Query 011270
Match_columns 489
No_of_seqs 387 out of 2463
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 23:29:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02844 oxidoreductase/ferric 100.0 6.1E-93 1.3E-97 767.5 45.6 488 1-489 227-722 (722)
2 PLN02292 ferric-chelate reduct 100.0 3.9E-84 8.5E-89 697.2 46.2 450 2-488 241-701 (702)
3 PLN02631 ferric-chelate reduct 100.0 4.3E-83 9.3E-88 687.7 43.3 448 2-488 224-698 (699)
4 KOG0039 Ferric reductase, NADH 100.0 4.1E-63 8.8E-68 536.7 33.2 364 1-487 266-646 (646)
5 COG4097 Predicted ferric reduc 100.0 1.3E-34 2.8E-39 281.6 23.7 232 14-270 130-378 (438)
6 cd06186 NOX_Duox_like_FAD_NADP 100.0 4.3E-31 9.3E-36 250.9 24.0 157 91-253 2-160 (210)
7 cd06189 flavin_oxioreductase N 100.0 5.7E-28 1.2E-32 231.9 21.5 203 89-318 2-206 (224)
8 cd06212 monooxygenase_like The 100.0 1.2E-27 2.7E-32 230.8 23.5 167 87-276 2-172 (232)
9 cd06197 FNR_like_2 FAD/NAD(P) 100.0 1.5E-27 3.2E-32 228.4 22.2 151 92-253 2-176 (220)
10 cd06215 FNR_iron_sulfur_bindin 100.0 1.7E-27 3.7E-32 229.5 21.5 206 89-317 2-212 (231)
11 cd06216 FNR_iron_sulfur_bindin 100.0 2.8E-27 6E-32 230.0 21.7 216 75-317 2-225 (243)
12 cd06210 MMO_FAD_NAD_binding Me 100.0 2.6E-27 5.6E-32 229.1 21.0 207 87-318 3-217 (236)
13 cd06198 FNR_like_3 NAD(P) bind 100.0 4.9E-27 1.1E-31 224.1 21.8 141 98-256 7-148 (216)
14 PRK08051 fre FMN reductase; Va 100.0 4.8E-27 1E-31 226.8 21.3 205 87-318 4-210 (232)
15 cd06217 FNR_iron_sulfur_bindin 100.0 6.7E-27 1.5E-31 225.9 20.9 209 87-318 3-217 (235)
16 cd06190 T4MO_e_transfer_like T 100.0 6.5E-27 1.4E-31 225.7 20.7 203 91-317 2-211 (232)
17 cd06191 FNR_iron_sulfur_bindin 99.9 1.7E-26 3.6E-31 222.7 21.5 206 89-318 2-213 (231)
18 cd06195 FNR1 Ferredoxin-NADP+ 99.9 1.2E-26 2.7E-31 225.1 20.7 206 90-318 2-217 (241)
19 cd06213 oxygenase_e_transfer_s 99.9 1.6E-26 3.6E-31 222.2 21.3 202 88-317 3-208 (227)
20 cd06187 O2ase_reductase_like T 99.9 1.5E-26 3.3E-31 221.8 20.6 202 91-317 2-205 (224)
21 cd06211 phenol_2-monooxygenase 99.9 1.9E-26 4.1E-31 223.4 21.3 206 87-318 8-220 (238)
22 cd06184 flavohem_like_fad_nad_ 99.9 4.4E-26 9.6E-31 222.0 22.7 208 86-318 7-225 (247)
23 cd00322 FNR_like Ferredoxin re 99.9 3E-26 6.4E-31 219.1 21.0 202 92-317 2-206 (223)
24 PRK11872 antC anthranilate dio 99.9 2.6E-26 5.6E-31 233.8 21.4 205 87-318 108-317 (340)
25 cd06188 NADH_quinone_reductase 99.9 2.7E-26 5.9E-31 228.0 20.3 210 87-318 11-265 (283)
26 cd06209 BenDO_FAD_NAD Benzoate 99.9 5.1E-26 1.1E-30 218.9 21.4 203 87-318 3-209 (228)
27 cd06214 PA_degradation_oxidore 99.9 1.1E-25 2.3E-30 218.4 23.5 211 87-318 3-222 (241)
28 PRK10684 HCP oxidoreductase, N 99.9 4.9E-26 1.1E-30 231.2 21.5 207 87-318 11-219 (332)
29 PRK07609 CDP-6-deoxy-delta-3,4 99.9 5.2E-26 1.1E-30 231.8 21.7 205 87-318 104-314 (339)
30 cd06194 FNR_N-term_Iron_sulfur 99.9 9.9E-26 2.2E-30 216.0 20.9 164 91-278 2-168 (222)
31 cd06183 cyt_b5_reduct_like Cyt 99.9 1.4E-25 3.1E-30 216.4 21.6 210 89-318 2-218 (234)
32 cd06221 sulfite_reductase_like 99.9 9.7E-26 2.1E-30 220.4 20.5 200 91-318 2-206 (253)
33 cd06196 FNR_like_1 Ferredoxin 99.9 1.7E-25 3.7E-30 213.8 20.3 197 87-318 2-202 (218)
34 PRK08345 cytochrome-c3 hydroge 99.9 3.9E-25 8.5E-30 220.2 22.8 167 87-277 7-179 (289)
35 PTZ00274 cytochrome b5 reducta 99.9 4.4E-25 9.6E-30 222.0 22.7 217 87-318 54-279 (325)
36 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 5.6E-25 1.2E-29 225.3 22.5 211 87-318 3-223 (352)
37 PRK10926 ferredoxin-NADP reduc 99.9 8E-25 1.7E-29 213.3 21.5 208 87-318 6-222 (248)
38 PLN03116 ferredoxin--NADP+ red 99.9 1.4E-24 3E-29 218.0 22.7 214 87-317 26-274 (307)
39 cd06185 PDR_like Phthalate dio 99.9 1.2E-24 2.6E-29 206.8 20.6 140 92-254 2-147 (211)
40 COG1018 Hmp Flavodoxin reducta 99.9 1.3E-24 2.9E-29 212.2 21.2 201 87-317 7-211 (266)
41 cd06208 CYPOR_like_FNR These f 99.9 2.2E-24 4.8E-29 214.6 22.5 215 87-318 10-255 (286)
42 PRK08221 anaerobic sulfite red 99.9 1.7E-24 3.6E-29 212.8 20.4 199 87-318 9-208 (263)
43 cd06218 DHOD_e_trans FAD/NAD b 99.9 1.2E-24 2.5E-29 211.9 19.1 193 91-318 2-196 (246)
44 PRK13289 bifunctional nitric o 99.9 3.2E-24 6.9E-29 223.5 23.1 206 88-318 157-374 (399)
45 PLN03115 ferredoxin--NADP(+) r 99.9 3.8E-24 8.2E-29 217.7 22.0 212 89-317 94-334 (367)
46 cd06192 DHOD_e_trans_like FAD/ 99.9 3.6E-24 7.8E-29 208.2 20.2 192 91-318 2-194 (243)
47 PRK00054 dihydroorotate dehydr 99.9 3.9E-24 8.4E-29 208.8 20.4 192 87-319 6-198 (250)
48 PRK05464 Na(+)-translocating N 99.9 3.8E-24 8.2E-29 223.1 20.8 209 88-318 136-389 (409)
49 PRK06222 ferredoxin-NADP(+) re 99.9 5.4E-24 1.2E-28 211.2 20.9 195 88-319 2-198 (281)
50 cd06219 DHOD_e_trans_like1 FAD 99.9 7.2E-24 1.6E-28 206.6 20.5 192 89-318 2-196 (248)
51 PTZ00319 NADH-cytochrome B5 re 99.9 8.7E-24 1.9E-28 211.4 21.5 207 87-315 35-280 (300)
52 TIGR02911 sulfite_red_B sulfit 99.9 5E-24 1.1E-28 209.2 19.1 198 87-317 7-205 (261)
53 TIGR01941 nqrF NADH:ubiquinone 99.9 5.9E-24 1.3E-28 221.4 19.9 209 88-318 132-385 (405)
54 cd06200 SiR_like1 Cytochrome p 99.9 4E-23 8.6E-28 201.0 22.5 154 99-278 17-180 (245)
55 PRK05802 hypothetical protein; 99.9 3.3E-23 7.2E-28 208.4 21.0 148 87-254 66-221 (320)
56 cd06182 CYPOR_like NADPH cytoc 99.9 5.6E-23 1.2E-27 202.3 22.1 162 97-277 14-190 (267)
57 PRK05713 hypothetical protein; 99.9 4E-23 8.6E-28 208.1 19.7 162 87-273 93-258 (312)
58 cd06220 DHOD_e_trans_like2 FAD 99.9 7.5E-23 1.6E-27 197.6 19.5 135 89-254 2-136 (233)
59 KOG0534 NADH-cytochrome b-5 re 99.9 1.8E-22 4E-27 196.1 20.9 209 87-315 53-266 (286)
60 COG0543 UbiB 2-polyprenylpheno 99.9 3.7E-22 8.1E-27 194.6 20.9 196 88-318 10-208 (252)
61 TIGR03224 benzo_boxA benzoyl-C 99.9 4.5E-22 9.9E-27 206.8 21.8 181 87-290 144-348 (411)
62 PLN02252 nitrate reductase [NA 99.9 5.9E-22 1.3E-26 221.4 21.8 208 87-315 636-868 (888)
63 cd06201 SiR_like2 Cytochrome p 99.9 3.6E-21 7.9E-26 191.6 23.4 161 87-276 47-222 (289)
64 PF08030 NAD_binding_6: Ferric 99.9 3.5E-22 7.6E-27 180.7 12.8 80 197-278 1-80 (156)
65 PRK12778 putative bifunctional 99.9 2.1E-20 4.5E-25 209.3 20.1 195 88-319 2-198 (752)
66 PTZ00306 NADH-dependent fumara 99.8 1.6E-19 3.4E-24 209.6 22.8 212 88-318 917-1145(1167)
67 PRK12779 putative bifunctional 99.8 3.1E-19 6.7E-24 202.1 22.0 206 87-319 650-864 (944)
68 cd06193 siderophore_interactin 99.8 1.6E-19 3.5E-24 174.6 16.9 136 90-247 1-161 (235)
69 PRK12775 putative trifunctiona 99.8 3.3E-19 7.1E-24 203.5 20.6 196 88-320 2-199 (1006)
70 PF08022 FAD_binding_8: FAD-bi 99.8 8.2E-21 1.8E-25 160.2 -1.8 98 88-190 4-104 (105)
71 cd06199 SiR Cytochrome p450- l 99.8 2.7E-18 5.7E-23 176.2 14.1 176 110-309 129-316 (360)
72 TIGR01931 cysJ sulfite reducta 99.7 8.1E-18 1.8E-22 182.8 13.6 153 111-287 367-531 (597)
73 cd06207 CyPoR_like NADPH cytoc 99.7 4.4E-17 9.5E-22 168.6 15.2 144 127-287 160-315 (382)
74 cd06206 bifunctional_CYPOR The 99.7 3.9E-17 8.6E-22 169.1 14.9 182 112-317 146-343 (384)
75 cd06203 methionine_synthase_re 99.7 3.5E-16 7.7E-21 162.5 17.3 173 127-310 170-355 (398)
76 PRK06214 sulfite reductase; Pr 99.7 5.5E-16 1.2E-20 164.6 17.1 163 127-310 312-487 (530)
77 PRK10953 cysJ sulfite reductas 99.7 3E-16 6.5E-21 169.9 14.0 176 111-310 370-557 (600)
78 cd06204 CYPOR NADPH cytochrome 99.7 1.6E-15 3.4E-20 158.5 16.4 177 128-310 175-373 (416)
79 COG2871 NqrF Na+-transporting 99.7 7.5E-16 1.6E-20 145.8 11.8 195 102-318 153-390 (410)
80 cd06202 Nitric_oxide_synthase 99.6 2.2E-14 4.7E-19 149.5 15.9 169 129-317 175-365 (406)
81 PF00175 NAD_binding_1: Oxidor 99.4 9.5E-13 2.1E-17 111.3 10.8 104 202-317 1-107 (109)
82 COG0369 CysJ Sulfite reductase 99.3 2.1E-11 4.5E-16 130.8 16.5 161 129-309 371-543 (587)
83 PF00970 FAD_binding_6: Oxidor 99.3 1.9E-12 4.2E-17 107.7 6.6 91 88-190 2-97 (99)
84 PRK06567 putative bifunctional 99.3 2.1E-11 4.6E-16 135.7 16.0 120 87-222 792-915 (1028)
85 KOG1158 NADP/FAD dependent oxi 99.1 1.2E-09 2.6E-14 117.4 13.4 167 128-310 419-602 (645)
86 KOG3378 Globins and related he 99.0 1.4E-09 3E-14 102.9 11.3 125 88-222 152-287 (385)
87 KOG1159 NADP-dependent flavopr 98.7 6.6E-08 1.4E-12 98.6 9.6 162 117-309 357-531 (574)
88 PF01794 Ferric_reduct: Ferric 98.0 8.5E-06 1.8E-10 70.3 5.5 47 7-53 76-123 (125)
89 COG2375 ViuB Siderophore-inter 96.8 0.032 7E-07 54.3 13.8 139 86-246 18-183 (265)
90 PF08021 FAD_binding_9: Sidero 96.0 0.037 8.1E-07 47.4 8.0 90 89-190 1-117 (117)
91 COG2717 Predicted membrane pro 95.4 0.11 2.4E-06 48.7 9.3 75 9-83 115-195 (209)
92 PRK05419 putative sulfite oxid 93.6 0.47 1E-05 44.8 9.2 73 9-83 115-195 (205)
93 cd06195 FNR1 Ferredoxin-NADP+ 93.1 0.077 1.7E-06 51.2 3.2 25 442-466 200-224 (241)
94 PRK08051 fre FMN reductase; Va 92.2 0.098 2.1E-06 50.3 2.6 22 444-465 195-217 (232)
95 PF00175 NAD_binding_1: Oxidor 92.1 0.14 3.1E-06 42.4 3.3 34 427-460 74-109 (109)
96 cd06188 NADH_quinone_reductase 91.0 0.27 5.8E-06 48.8 4.4 25 442-466 248-272 (283)
97 cd06184 flavohem_like_fad_nad_ 90.8 0.25 5.4E-06 47.8 3.9 39 424-466 194-232 (247)
98 cd06213 oxygenase_e_transfer_s 90.3 0.34 7.4E-06 46.2 4.3 24 443-466 193-216 (227)
99 cd06209 BenDO_FAD_NAD Benzoate 90.1 0.22 4.7E-06 47.5 2.7 23 443-465 193-215 (228)
100 cd06215 FNR_iron_sulfur_bindin 90.0 0.21 4.4E-06 47.7 2.5 40 424-466 181-220 (231)
101 cd06189 flavin_oxioreductase N 89.4 0.24 5.2E-06 47.1 2.4 24 443-466 190-213 (224)
102 cd06217 FNR_iron_sulfur_bindin 89.4 0.24 5.1E-06 47.4 2.3 24 443-466 201-224 (235)
103 cd06210 MMO_FAD_NAD_binding Me 89.3 0.51 1.1E-05 45.2 4.6 22 444-465 202-223 (236)
104 cd06187 O2ase_reductase_like T 88.0 0.58 1.3E-05 44.3 4.0 40 424-465 173-212 (224)
105 cd06218 DHOD_e_trans FAD/NAD b 87.8 0.79 1.7E-05 44.5 4.9 40 424-465 163-202 (246)
106 cd06191 FNR_iron_sulfur_bindin 87.7 0.37 7.9E-06 46.1 2.5 24 443-466 197-220 (231)
107 cd06220 DHOD_e_trans_like2 FAD 87.6 0.71 1.5E-05 44.3 4.4 48 426-487 153-200 (233)
108 cd06196 FNR_like_1 Ferredoxin 87.3 0.34 7.5E-06 45.8 2.0 23 444-466 187-209 (218)
109 TIGR02160 PA_CoA_Oxy5 phenylac 87.2 0.77 1.7E-05 47.0 4.6 22 444-465 208-229 (352)
110 PRK10684 HCP oxidoreductase, N 87.0 0.41 8.9E-06 48.7 2.4 22 444-465 204-225 (332)
111 cd06211 phenol_2-monooxygenase 86.7 0.8 1.7E-05 44.0 4.2 24 443-466 204-227 (238)
112 PRK05713 hypothetical protein; 86.4 0.46 1E-05 47.8 2.5 22 444-465 275-296 (312)
113 PRK11872 antC anthranilate dio 86.2 0.48 1.1E-05 48.4 2.5 23 443-465 301-323 (340)
114 cd06216 FNR_iron_sulfur_bindin 85.6 0.64 1.4E-05 44.8 2.9 24 443-466 210-233 (243)
115 cd06190 T4MO_e_transfer_like T 85.6 0.62 1.4E-05 44.4 2.8 24 442-465 195-218 (232)
116 cd06194 FNR_N-term_Iron_sulfur 84.7 0.72 1.6E-05 43.7 2.8 24 442-465 186-209 (222)
117 COG1018 Hmp Flavodoxin reducta 84.7 0.83 1.8E-05 45.0 3.2 40 423-466 180-219 (266)
118 cd00322 FNR_like Ferredoxin re 83.8 0.63 1.4E-05 43.8 2.0 24 442-465 190-213 (223)
119 PRK05464 Na(+)-translocating N 83.2 0.9 1.9E-05 47.7 2.9 24 443-466 373-396 (409)
120 PRK13289 bifunctional nitric o 82.8 1.2 2.5E-05 46.5 3.6 24 443-466 358-381 (399)
121 PRK07609 CDP-6-deoxy-delta-3,4 82.7 0.81 1.7E-05 46.6 2.3 24 443-466 298-321 (339)
122 cd06214 PA_degradation_oxidore 82.4 1.9 4E-05 41.4 4.6 24 442-465 205-228 (241)
123 cd06193 siderophore_interactin 82.0 1 2.2E-05 43.3 2.6 23 442-464 197-219 (235)
124 PRK06222 ferredoxin-NADP(+) re 81.9 1.8 3.8E-05 43.0 4.3 38 427-465 166-203 (281)
125 TIGR01941 nqrF NADH:ubiquinone 79.7 1.2 2.5E-05 46.7 2.3 24 443-466 369-392 (405)
126 PRK10926 ferredoxin-NADP reduc 79.1 1.3 2.8E-05 43.0 2.2 22 443-464 206-227 (248)
127 PRK08345 cytochrome-c3 hydroge 78.7 1.4 3E-05 43.9 2.4 23 443-465 212-234 (289)
128 cd06208 CYPOR_like_FNR These f 77.3 2.7 5.9E-05 41.7 4.0 22 443-464 239-260 (286)
129 KOG0534 NADH-cytochrome b-5 re 77.3 2.5 5.4E-05 41.9 3.6 40 424-464 235-274 (286)
130 PLN03116 ferredoxin--NADP+ red 75.2 3.4 7.4E-05 41.5 4.1 21 444-464 260-280 (307)
131 cd06201 SiR_like2 Cytochrome p 73.6 2.2 4.8E-05 42.5 2.2 22 443-464 245-266 (289)
132 cd06219 DHOD_e_trans_like1 FAD 73.0 4.6 9.9E-05 39.1 4.3 21 445-465 182-202 (248)
133 cd06221 sulfite_reductase_like 72.2 2.4 5.2E-05 41.3 2.1 24 443-466 190-213 (253)
134 cd06182 CYPOR_like NADPH cytoc 71.5 2.8 6E-05 41.3 2.4 21 445-465 216-237 (267)
135 cd06183 cyt_b5_reduct_like Cyt 70.7 3.4 7.3E-05 39.2 2.7 25 442-466 200-225 (234)
136 cd06200 SiR_like1 Cytochrome p 70.5 3 6.5E-05 40.4 2.3 21 444-464 203-224 (245)
137 PRK00054 dihydroorotate dehydr 69.4 4.8 0.0001 39.0 3.5 37 425-465 167-203 (250)
138 PTZ00274 cytochrome b5 reducta 68.1 3.2 6.9E-05 42.1 2.0 18 444-461 264-281 (325)
139 cd06192 DHOD_e_trans_like FAD/ 66.7 3.8 8.3E-05 39.4 2.2 22 444-465 179-200 (243)
140 PLN03115 ferredoxin--NADP(+) r 66.5 7.3 0.00016 40.2 4.3 22 443-464 319-340 (367)
141 cd06206 bifunctional_CYPOR The 63.8 4.8 0.0001 41.8 2.4 29 98-126 15-43 (384)
142 PRK05802 hypothetical protein; 60.5 5.7 0.00012 40.2 2.2 19 446-464 257-275 (320)
143 COG0543 UbiB 2-polyprenylpheno 59.5 6.3 0.00014 38.4 2.2 24 443-466 192-215 (252)
144 TIGR03224 benzo_boxA benzoyl-C 57.3 12 0.00025 39.4 3.9 21 444-464 364-388 (411)
145 TIGR02911 sulfite_red_B sulfit 56.9 10 0.00022 37.1 3.2 23 443-465 190-212 (261)
146 cd06207 CyPoR_like NADPH cytoc 56.3 7.4 0.00016 40.4 2.2 28 99-126 16-44 (382)
147 PF01794 Ferric_reduct: Ferric 54.7 29 0.00062 29.1 5.4 47 13-59 1-53 (125)
148 PRK12779 putative bifunctional 52.6 8.7 0.00019 44.8 2.2 22 445-466 849-870 (944)
149 PF00667 FAD_binding_1: FAD bi 50.6 15 0.00033 34.9 3.2 26 128-153 176-201 (219)
150 cd06204 CYPOR NADPH cytochrome 49.9 11 0.00024 39.6 2.3 38 88-125 8-50 (416)
151 PRK08221 anaerobic sulfite red 49.5 13 0.00029 36.3 2.7 24 442-465 191-214 (263)
152 cd06199 SiR Cytochrome p450- l 48.4 12 0.00025 38.6 2.2 29 98-126 15-44 (360)
153 cd06202 Nitric_oxide_synthase 48.2 13 0.00027 39.1 2.4 29 98-126 15-45 (406)
154 PTZ00319 NADH-cytochrome B5 re 48.1 14 0.0003 37.0 2.6 22 443-464 267-289 (300)
155 PRK12778 putative bifunctional 47.2 12 0.00026 42.6 2.2 21 445-465 183-203 (752)
156 PRK12775 putative trifunctiona 44.4 24 0.00052 41.5 4.2 21 446-466 184-204 (1006)
157 TIGR01931 cysJ sulfite reducta 37.5 21 0.00046 39.4 2.2 38 88-125 237-280 (597)
158 PRK12446 undecaprenyldiphospho 36.0 46 0.001 34.0 4.3 24 198-221 2-27 (352)
159 PTZ00306 NADH-dependent fumara 36.0 25 0.00054 42.2 2.6 24 442-465 1128-1151(1167)
160 TIGR01282 nifD nitrogenase mol 33.9 33 0.00072 36.6 2.9 67 415-487 106-174 (466)
161 PF14358 DUF4405: Domain of un 33.0 1.1E+02 0.0024 22.6 5.0 27 33-59 34-61 (64)
162 PLN02252 nitrate reductase [NA 32.7 48 0.001 38.5 4.1 23 442-464 854-877 (888)
163 cd06203 methionine_synthase_re 31.6 45 0.00098 34.8 3.4 29 98-126 15-44 (398)
164 cd01976 Nitrogenase_MoFe_alpha 31.1 36 0.00079 35.8 2.7 67 415-487 73-141 (421)
165 cd01966 Nitrogenase_NifN_1 Nit 28.7 59 0.0013 34.2 3.7 72 415-488 56-128 (417)
166 PF09874 DUF2101: Predicted me 28.7 1.2E+02 0.0026 28.4 5.1 28 93-120 149-176 (206)
167 PF15179 Myc_target_1: Myc tar 25.6 1E+02 0.0022 28.4 4.0 29 369-397 24-53 (197)
168 PLN02631 ferric-chelate reduct 25.2 1.4E+02 0.0031 33.7 6.0 49 10-58 153-207 (699)
169 cd01971 Nitrogenase_VnfN_like 23.9 89 0.0019 32.9 4.0 66 415-487 61-127 (427)
170 PF06223 Phage_tail_T: Minor t 23.4 39 0.00085 28.0 1.0 13 422-435 6-18 (103)
171 PRK06214 sulfite reductase; Pr 23.0 55 0.0012 35.6 2.3 38 88-125 171-214 (530)
172 TIGR01715 phage_lam_T phage ta 22.1 45 0.00097 27.4 1.0 12 424-435 2-13 (100)
173 PLN03111 DNA-directed RNA poly 20.6 71 0.0015 30.1 2.1 43 421-463 44-88 (206)
174 COG2871 NqrF Na+-transporting 20.3 1.1E+02 0.0025 30.3 3.6 36 431-466 361-397 (410)
175 TIGR01279 DPOR_bchN light-inde 20.2 1E+02 0.0022 32.3 3.5 67 415-487 58-126 (407)
176 PLN02292 ferric-chelate reduct 20.0 2E+02 0.0043 32.5 5.9 49 10-58 170-224 (702)
No 1
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=6.1e-93 Score=767.54 Aligned_cols=488 Identities=72% Similarity=1.200 Sum_probs=422.0
Q ss_pred CceecccCchhhhhHHHHHHHHHHHHhchhHHHhhchhhHHHHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHH
Q 011270 1 MWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLR 80 (489)
Q Consensus 1 ~~~w~~~~~~~~~G~ia~~~~~~m~~~S~~~iRr~~ye~F~~~H~l~~~~~v~~~~H~~~~~~~~~~~~~~l~~~dr~~R 80 (489)
+++|.+++..+++|+++++++++|+++|++++||+.||+||++|++++++++++++|+...+.+|++|++++|++||++|
T Consensus 227 ~~~w~~~~~~~~~G~IAlv~l~iL~itSl~~iRR~~YElF~~~H~L~ivflv~~~~H~~~~~~~~v~~~i~L~~~DRllR 306 (722)
T PLN02844 227 IWKWQKTGRIYLAGEIALVTGLVIWITSLPQIRRKRFEIFYYTHHLYIVFLIFFLFHAGDRHFYMVFPGIFLFGLDKLLR 306 (722)
T ss_pred hhhhccCcchhhhHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHhhhHhhcCcchhhhHHHHHHHHHHHHhh
Confidence 35798899999999999999999999999999999999999999999989999999998877788999999999999999
Q ss_pred HhhhcCceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHH
Q 011270 81 FIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSS 160 (489)
Q Consensus 81 ~~r~~~~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~ 160 (489)
++++++..++++++.++++.+++++++++.++|+||||++|++|..+++|||||||+|+|..+++.+++.||..|+||++
T Consensus 307 ~~~s~~~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~ 386 (722)
T PLN02844 307 IVQSRPETCILSARLFPCKAIELVLPKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNS 386 (722)
T ss_pred eEEEeeeEEEEEEEEecCCEEEEEEECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHH
Confidence 99987777788899999999999999988899999999999999999999999999998765678999999999999999
Q ss_pred HHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEe
Q 011270 161 LYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVI 240 (489)
Q Consensus 161 L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~ 240 (489)
|++.++...+.+.+.....++.|+||||.+..+...++++++||||+||||++|+++++.+++ +.....+++++|+|++
T Consensus 387 L~~~i~~~l~~g~~~~~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~-~~~~~~~~~V~LIw~v 465 (722)
T PLN02844 387 LYNKIQAELDSETNQMNCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQS-SSRYRFPKRVQLIYVV 465 (722)
T ss_pred HHHHHHhhccCCCCcccceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhcc-ccccCCCCcEEEEEEE
Confidence 998876332221111122589999999988766677899999999999999999999998743 1222345789999999
Q ss_pred CCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCC-CCceEEecCCcHHHHHHHHH
Q 011270 241 KSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGT-QSNYAVNGLESLIWMAALVG 319 (489)
Q Consensus 241 r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~v~g~g~~~~~aav~~ 319 (489)
|+.+|+.+.+++.+.+.+...+..++++++|+|||+.+....++.+++..+.+.+++++ .+++.+||++++.||+++++
T Consensus 466 R~~~dL~~~del~~~l~~~~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~~lw~~~~~~ 545 (722)
T PLN02844 466 KKSQDICLLNPISSLLLNQSSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVNFSTKCSRYAIHGLESFLWMAAMVA 545 (722)
T ss_pred CCHHHhhhHHHHHHHhHHhHHHhcCceEEEEECCCCCCCCchhhHhhccchhhhcCCCCCCCceEEeCCCchHHHHHHHH
Confidence 99999999999876554322233588999999999876555566666655556666665 47899999999999999999
Q ss_pred HHHHHHHHHHhhhceEEecCCCCCcc-ccccCCccccccCCCCchhHHHHHHHHHHHHhhhhhhHHHHHHHHhhhccCCC
Q 011270 320 ITSILFVIFLISLNHIFVPVEKKLPS-EKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTP 398 (489)
Q Consensus 320 ~s~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (489)
+|+++|++++++++|||||+|||++. .+.+.|++++.+++++|+|++++|+++||+++|++|++++++|.|++.+++.|
T Consensus 546 ~s~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (722)
T PLN02844 546 LTSITFLVFLIGLNHIFIPSEHKSHSGVKMAASGEMKTAKEKTPSWVVDLLLIVSFIIAITCSTFVAIILRWRRLKKEIP 625 (722)
T ss_pred HHHHHHHHHHHHHheEEeccccccccchhcccccccccccCCCchHHHHHHHHHHHHHHheecceEeEeeeccccccCCc
Confidence 99999999999999999999999854 78899999999999999999999999999999999999999998988888887
Q ss_pred CCCccCCcc-----ccccCCccceeeeeeCCCCChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhhchhhhccc
Q 011270 399 PVSLNQGKA-----VQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNA 473 (489)
Q Consensus 399 ~~~~~~~~~-----~~~~~~~~~~~~~~~g~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~~~~~~~~~ 473 (489)
..+++..-. .+...++++++++|||+|||+++||+++++++.|++|||+|||||+|+++||++||++|+|++.++
T Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~ 705 (722)
T PLN02844 626 RVSQKQGIKPEEGSMEKRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGD 705 (722)
T ss_pred cccccccCCCCCccccccccccccceeecCCCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhccccccccc
Confidence 765443322 223456779999999999999999999999999999999999999999999999999999999875
Q ss_pred C-CCCCceeeecccccC
Q 011270 474 N-KDKPYFNFHSLNFTF 489 (489)
Q Consensus 474 ~-~~~~~~~fhs~~F~~ 489 (489)
+ +.++.|||||+||||
T Consensus 706 ~~~~~~~~~~hs~~f~l 722 (722)
T PLN02844 706 DGKRKMYFSFHSLNFTL 722 (722)
T ss_pred ccccCCceeeeecccCC
Confidence 4 447999999999997
No 2
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=3.9e-84 Score=697.20 Aligned_cols=450 Identities=36% Similarity=0.683 Sum_probs=369.4
Q ss_pred ceecccCchhhhhHHHHHHHHHHHHhchhHHHhhchhhHHHHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHH
Q 011270 2 WRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRF 81 (489)
Q Consensus 2 ~~w~~~~~~~~~G~ia~~~~~~m~~~S~~~iRr~~ye~F~~~H~l~~~~~v~~~~H~~~~~~~~~~~~~~l~~~dr~~R~ 81 (489)
++|.+.+..+++|+++++++++|+++|++++||+.||+|+++|++++++++++++|+.....++++|++++|++||++|+
T Consensus 241 ~~w~~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~~YE~F~~~HiL~~v~~v~~~~H~~~~~~~~~~~~i~l~~~DR~lR~ 320 (702)
T PLN02292 241 LEWDRTGVSNLAGEIALVAGLVMWATTYPKIRRRFFEVFFYTHYLYIVFMLFFVFHVGISFALISFPGFYIFLVDRFLRF 320 (702)
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHhhHHHHhcccHhHHHHHHHHHHHHeeeehhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788899999999999999999999999999999999999998888889999876555678899999999999999
Q ss_pred hhhcCceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHH
Q 011270 82 IQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSL 161 (489)
Q Consensus 82 ~r~~~~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L 161 (489)
+|++...++++++.++++++++++++++.++|+||||+++++|..+++|+|||||+|+|.+++++++++||..|+||++|
T Consensus 321 ~r~~~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L 400 (702)
T PLN02292 321 LQSRNNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKL 400 (702)
T ss_pred HHhhcceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHH
Confidence 99887888999999999999999999888999999999999999889999999999998546788999999999999999
Q ss_pred HHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeC
Q 011270 162 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 241 (489)
Q Consensus 162 ~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r 241 (489)
++.++. .+...+.++.++||||.+..+...++++++||||+||||++|+++++.++. .++....++++|+|++|
T Consensus 401 ~~~l~~-----gd~i~~~~V~VeGPYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~-~~~~~~~~~V~LIw~vR 474 (702)
T PLN02292 401 YHMLSS-----SDQIDRLAVSVEGPYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTS-STETCKIPKITLICAFK 474 (702)
T ss_pred HHhCCC-----CCccccceEEEECCccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhcc-ccccCCCCcEEEEEEEC
Confidence 987651 111123578999999987656667899999999999999999999998753 11111236899999999
Q ss_pred CcchhhhHHhHhHHhhh--ccCCCcceEEEEEEeCCCCCCc-chhhhcchhhhhHhh-hcC--CCCceEEecCCcHHHHH
Q 011270 242 SSQEICLLNSISPLLSN--QQSKKWHLTLKVFVTQEEQSSV-TVREVLNDLSLVRAV-RFG--TQSNYAVNGLESLIWMA 315 (489)
Q Consensus 242 ~~~~l~~~~~l~~~l~~--~~~~~~~l~v~~~vTr~~~~~~-~~~g~v~~~~~~~~~-~~~--~~~~~~v~g~g~~~~~a 315 (489)
+.+|+.+.+++.+.+.. ...++.++++++|+||++++.. +..| ++...++.. ... +.+...+|||+++.|++
T Consensus 475 ~~~Dl~~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~w~~ 552 (702)
T PLN02292 475 NSSDLSMLDLILPTSGLETELSSFIDIQIKAFVTREKEAGVKESTG--NMNIIKTLWFKPNLSDQPISPILGPNSWLWLA 552 (702)
T ss_pred CHHHhhHHHHHHHhhhhHHHHhhcCCceEEEEEeCCCCCCCccccc--chhhhhhhcCCCCCCCCceEEEeCCCchHHHH
Confidence 99999999888765521 1124579999999999876543 1222 333332322 112 35788999999999999
Q ss_pred HHHHHHHHHHHHHHhhhceEEe-cCCCCCccccccCCccccccCCCCchhHHHHHHHHHHHHhhhhhhHHHHHHHHhhhc
Q 011270 316 ALVGITSILFVIFLISLNHIFV-PVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLK 394 (489)
Q Consensus 316 av~~~s~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (489)
+++++|+++|+++++++++||| |.|||+ +.+++|.+++|+++++|++|++|++++++|..+++.
T Consensus 553 ~~~~~s~~~f~~~~~~~~~y~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~w~~~~~~ 617 (702)
T PLN02292 553 AILSSSFLIFIIIIAIITRYHIYPIDQNS---------------NKYTLAYKSLIYLLVISISVVATSTAAMLWNKKKYY 617 (702)
T ss_pred HHHHHHHHHHHHHHHHhheeEeccccCCC---------------CCCccHHHHHHHHHHHHHHhhhhhhHHHhhcccccc
Confidence 9999999999999999999999 999887 458899999999999999999988888775332222
Q ss_pred c-CCCCCCcc-CCcccc--ccCCccceeeeeeCCCCChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhhchhhh
Q 011270 395 K-QTPPVSLN-QGKAVQ--VLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFM 470 (489)
Q Consensus 395 ~-~~~~~~~~-~~~~~~--~~~~~~~~~~~~~g~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~~~~~~ 470 (489)
+ +..+++.. ..++.+ ..+++++.+++|||+|||+++||+ +++|++|||+||||++|+++||++|++++
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~----~~~~~~vgvlv~gp~~~~~~va~~c~s~~---- 689 (702)
T PLN02292 618 KKSSQQVDNVDSPREIESSPQQLLVQRTNIHYGERPNLNKLLV----GLKGSSVGVLVCGPKKMRQKVAKICSSGL---- 689 (702)
T ss_pred cchhccccccccccccccCcccccccceeeeccCCCCHHHHHH----hcCCCceeEEEECcHHHHHHHHHHHhcCC----
Confidence 2 22222211 111111 345689999999999999999994 56899999999999999999999999954
Q ss_pred cccCCCCCceeeeccccc
Q 011270 471 MNANKDKPYFNFHSLNFT 488 (489)
Q Consensus 471 ~~~~~~~~~~~fhs~~F~ 488 (489)
+++|||||+|||
T Consensus 690 ------~~~~~~~s~sf~ 701 (702)
T PLN02292 690 ------AENLHFESISFS 701 (702)
T ss_pred ------CcceeEEeeccc
Confidence 789999999998
No 3
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=4.3e-83 Score=687.72 Aligned_cols=448 Identities=33% Similarity=0.640 Sum_probs=365.6
Q ss_pred ceecccCchhhhhHHHHHHHHHHHHhchhHHHhhchhhHHHHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHH
Q 011270 2 WRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRF 81 (489)
Q Consensus 2 ~~w~~~~~~~~~G~ia~~~~~~m~~~S~~~iRr~~ye~F~~~H~l~~~~~v~~~~H~~~~~~~~~~~~~~l~~~dr~~R~ 81 (489)
++|......+++|++|++++++|+++|++++||++||+|+++|++++++++++++|....+.+|++|++++|++||++|+
T Consensus 224 ~~w~~~~~~~~~GviA~v~~~lm~~~Sl~~~RRr~YE~F~~~Hillaifiv~~~~H~g~~w~~~~~~~ialw~~DR~lR~ 303 (699)
T PLN02631 224 FAWNPTYVPNLAGTIAMVIGIAMWVTSLPSFRRKKFELFFYTHHLYGLYIVFYVIHVGDSWFCMILPNIFLFFIDRYLRF 303 (699)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHHHHheEEecCCchHHHHHHHHHHHHHHHHHHH
Confidence 35666666789999999999999999999999999999999999998888899999987777888999999999999999
Q ss_pred hhhcCceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHH
Q 011270 82 IQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSL 161 (489)
Q Consensus 82 ~r~~~~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L 161 (489)
+|+....++++++.+++++++++++++++++|+||||++|++|..+.+|||||||+|+|.++++.++++||+.|+||++|
T Consensus 304 ~r~~~~~~lv~~~~l~~d~l~l~~~~~~~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L 383 (699)
T PLN02631 304 LQSTKRSRLVSARILPSDNLELTFSKTPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKL 383 (699)
T ss_pred HHHhceEEEEEEEEeCCCeEEEEEEcCCCCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHH
Confidence 99887788899999999999999998888999999999999999999999999999998655789999999999999999
Q ss_pred HHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeC
Q 011270 162 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 241 (489)
Q Consensus 162 ~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r 241 (489)
++.++. ...+.++.+|||||.+..+..+++++|+||||+||||++|++++++++.. +...+.++++|+|++|
T Consensus 384 ~~~l~~-------~g~~i~V~VeGPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~-~~~~~~~~V~Li~~vR 455 (699)
T PLN02631 384 YTHLSS-------SIDSLEVSTEGPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQ-NPSTKLPDVLLVCSFK 455 (699)
T ss_pred HHhhhc-------CCCeeEEEEECCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhccc-ccccCCCcEEEEEEEC
Confidence 987751 01246799999999876666788999999999999999999999987532 1112235899999999
Q ss_pred CcchhhhHHhHhHHhhh-ccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcC----CCCceEEecCCcHHHHHH
Q 011270 242 SSQEICLLNSISPLLSN-QQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFG----TQSNYAVNGLESLIWMAA 316 (489)
Q Consensus 242 ~~~~l~~~~~l~~~l~~-~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~----~~~~~~v~g~g~~~~~aa 316 (489)
+.+|+.+.|++.+.... ...++.++++++|+||++++. ..+... ...+..++. +.+...+.|++++.|+++
T Consensus 456 ~~~dL~f~deL~~l~~~~~~l~~~ni~i~iyVTR~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~lw~~~ 531 (699)
T PLN02631 456 HYHDLAFLDLIFPLDISVSDISRLNLRIEAYITREDKKP--ETTDDH--RLLQTKWFKPQPLDSPISPVLGPNNFLWLGV 531 (699)
T ss_pred CHHHhhhHHHHhhhccchhhhhcCceEEEEEEcCCCCCc--cccccc--ccccccccccCCCCCCceeeecCCccHHHHH
Confidence 99999999998753110 011346999999999987553 112111 122333232 247889999999999999
Q ss_pred HHHHHHHHHHHHHhhhceEEe-cCCCCCccccccCCccccccCCCCchhHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcc
Q 011270 317 LVGITSILFVIFLISLNHIFV-PVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKK 395 (489)
Q Consensus 317 v~~~s~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
++++|+++|+++++++++||| |.|||+ ++.+++|++++++++..|++|+.|++++++|..+++++
T Consensus 532 ~~~~s~~~f~~~~~~~~~y~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 597 (699)
T PLN02631 532 VILSSFVMFLLLIGIVTRYYIYPVDHNT--------------GSIYNFSYRGLWDMFLGSVCIFISSSIVFLWRKKQNKE 597 (699)
T ss_pred HHHHHHHHHHHHHHhhheeEecccCCCC--------------CcccchHHHHHHHHHHHHhheeccceeeeeechhhccc
Confidence 999999999999999999999 999888 35788999999999888888787888887755444433
Q ss_pred CC--------------CCCCccCC---cccc----ccCCccceeeeeeCCCCChHHHHHHHHhhcCCccEEEEEeCCcch
Q 011270 396 QT--------------PPVSLNQG---KAVQ----VLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESM 454 (489)
Q Consensus 396 ~~--------------~~~~~~~~---~~~~----~~~~~~~~~~~~~g~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l 454 (489)
+. |..++.++ .+.+ ..+++++.+++|||+|||+++||.+ +..+++|||+||||++|
T Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~---~~~~~~vgvlv~gp~~~ 674 (699)
T PLN02631 598 GDKESKKQVQSVEFQTPTSSPGSWFHGHERELESVPYQSIVQATSVHFGSKPNLKKILLE---AEGSEDVGVMVCGPRKM 674 (699)
T ss_pred cccchhhccccccCCCCCCCCcccccccchhhhcccccccccceeeeecCCCCHHHHHHh---ccCCCceeEEEECcHHH
Confidence 22 11222211 0111 2356899999999999999999983 33456999999999999
Q ss_pred hHHHHHHhhhhchhhhcccCCCCCceeeeccccc
Q 011270 455 KESVAKTSQRKSQCFMMNANKDKPYFNFHSLNFT 488 (489)
Q Consensus 455 ~~~v~~~c~~~~~~~~~~~~~~~~~~~fhs~~F~ 488 (489)
+++||++|++++ +++|||||+|||
T Consensus 675 ~~~va~~c~s~~----------~~~~~f~s~sf~ 698 (699)
T PLN02631 675 RHEVAKICSSGL----------AKNLHFEAISFN 698 (699)
T ss_pred HHHHHHHHhcCC----------CcceeEEeeccc
Confidence 999999999954 799999999998
No 4
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-63 Score=536.72 Aligned_cols=364 Identities=33% Similarity=0.633 Sum_probs=296.9
Q ss_pred CceecccCchhhhhHHHHHHHHHHHHhchhHHHhhchhhHHHHhHHHHHHHHHHHHhcC-----chhhHHHHHHHHHHHH
Q 011270 1 MWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAG-----DRHFYMVFGGIFLFGL 75 (489)
Q Consensus 1 ~~~w~~~~~~~~~G~ia~~~~~~m~~~S~~~iRr~~ye~F~~~H~l~~~~~v~~~~H~~-----~~~~~~~~~~~~l~~~ 75 (489)
+++|-.+++.+++|+++++.+++|+++|++++||+.||.|||+||+++++++++++|+. ..|+|+++| +++|++
T Consensus 266 ~~~~~~~~~~~~tGv~~~i~~~im~v~s~~~fRR~~~e~F~ytH~l~~v~~illi~hg~~~~~~~~w~~~~~p-~~ly~~ 344 (646)
T KOG0039|consen 266 TYKWLLLGVVGLTGVILLILMLIMFVLSLPFFRRRFYEAFWYTHHLYIVFYILLIIHGGFRLLGTTWMYIAVP-VLLYIL 344 (646)
T ss_pred hhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999998 778888888 889999
Q ss_pred HHHHHHhhhcCceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCC
Q 011270 76 DKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDG 155 (489)
Q Consensus 76 dr~~R~~r~~~~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G 155 (489)
||++|+.|+..++.++++..+|+++++|++++|++++|+||||++|+||.++.+|||||||+|+| +|++++++||+.|
T Consensus 345 dR~~r~~r~~~~~~i~~~~llp~~vi~L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~g 422 (646)
T KOG0039|consen 345 DRILRFLRSQKNVKIAKVVLLPSDVLELIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKALG 422 (646)
T ss_pred HHHHHHHHHhcCceEEEEEEcCCCeEEEEEeCCCCCCCCCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEecC
Confidence 99999999988899999999999999999999999999999999999999999999999999999 7889999999999
Q ss_pred CccHHHHHHHHh-cccCCcCc-CcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccC------
Q 011270 156 EWTSSLYQMIHA-ELDSDADQ-MRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRK------ 227 (489)
Q Consensus 156 ~~T~~L~~~~~~-~~~~~~~~-~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~------ 227 (489)
|||++|++.+.+ ..+.+.+. ....++.||||||++++++.+|++++||+||+|+||++|++++++.+...++
T Consensus 423 ~wT~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~ 502 (646)
T KOG0039|consen 423 DWTEKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTS 502 (646)
T ss_pred cHHHHHHHHHhhhcccccccccccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccc
Confidence 999999999873 22111111 1256799999999999999999999999999999999999999998753332
Q ss_pred ----CCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCce
Q 011270 228 ----YRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNY 303 (489)
Q Consensus 228 ----~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~ 303 (489)
....+++.++|.+|+..++.|++.+...+.+.+ ...-.+++.|+|+.-.... ..
T Consensus 503 ~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~-~~~~~e~~~~~t~~~~~~d-----~~---------------- 560 (646)
T KOG0039|consen 503 DYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYD-SSGVIELHNYVTSSYEEGD-----AR---------------- 560 (646)
T ss_pred cccccceecceeEEEEeccccchHHHHHHHHHHHHHH-hcCCchhheehhHhHhhhh-----hh----------------
Confidence 124578999999999999999999887776543 2233667777764321000 00
Q ss_pred EEecCCcHHHHHHHHHHHHHHHHHHHhhhceEEecCCCCCccccccCCccccccCCCCchhHHHHHHHHHHHHhhhhhhH
Q 011270 304 AVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTL 383 (489)
Q Consensus 304 ~v~g~g~~~~~aav~~~s~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (489)
.+ + +-+.+-+++.
T Consensus 561 ----------~~-~--------~~~~~~~~~~------------------------------------------------ 573 (646)
T KOG0039|consen 561 ----------SA-L--------IQMVQKLLHA------------------------------------------------ 573 (646)
T ss_pred ----------hH-H--------HHHHHhhccc------------------------------------------------
Confidence 00 0 0001111110
Q ss_pred HHHHHHHhhhccCCCCCCccCCccccccCCccceeeeeeCCCCChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhh
Q 011270 384 MAILLRWRRLKKQTPPVSLNQGKAVQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQ 463 (489)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~ 463 (489)
+++.+. .++. ...+|+ +||||+++|+++++.|++.+||||+|||++|.+++++.|+
T Consensus 574 ----------~~~~di----------~~g~---~~~~~~-gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~ 629 (646)
T KOG0039|consen 574 ----------KNGVDI----------VTGL---KVETHF-GRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCN 629 (646)
T ss_pred ----------ccCccc----------cccc---eeeeeC-CCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHH
Confidence 000000 0121 123676 6999999999999999998899999999999999999999
Q ss_pred hhchhhhcccCCCCCceeeecccc
Q 011270 464 RKSQCFMMNANKDKPYFNFHSLNF 487 (489)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~fhs~~F 487 (489)
++++ .++++|+||+|||
T Consensus 630 ~~~~-------~~~~~~~f~~E~F 646 (646)
T KOG0039|consen 630 DFSS-------STATRFEFHKENF 646 (646)
T ss_pred hccc-------ccCceeeeeeccC
Confidence 9875 4689999999998
No 5
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-34 Score=281.64 Aligned_cols=232 Identities=21% Similarity=0.294 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHHHhchhHHHhhchhhHHHHhHHHHHHHHHHHHhcCch---------hhHHHHHH-HHHH--H--HHHHH
Q 011270 14 GEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDR---------HFYMVFGG-IFLF--G--LDKLL 79 (489)
Q Consensus 14 G~ia~~~~~~m~~~S~~~iRr~~ye~F~~~H~l~~~~~v~~~~H~~~~---------~~~~~~~~-~~l~--~--~dr~~ 79 (489)
|..+..+++.|++.+..+ -+..||.|.++|.+.++.+++..+|.... ..-|+..+ .+++ + ..-..
T Consensus 130 G~~~~yi~~~lllV~~l~-~~i~Ye~WR~~H~lm~vvYilg~~H~~~l~~~~~~s~~a~swl~~~~allG~l~~iysi~~ 208 (438)
T COG4097 130 GEWSAYIFIGLLLVWRLW-LNIGYENWRIAHRLMAVVYILGLLHSYGLLNYLYLSWPAVSWLVIAFALLGLLAAIYSIFG 208 (438)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHHhcchhHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554444444322 34679999999999999999999997321 11122111 1111 1 12222
Q ss_pred HHhhhcC-ceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCC-CcceeeeEEeecCCCCCCeEEEEEEeCCCc
Q 011270 80 RFIQSRP-ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSIS-KFQWHSFSITSSSSVDDQTMSLIVKCDGEW 157 (489)
Q Consensus 80 R~~r~~~-~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s-~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~ 157 (489)
+..++++ ...+...+..+.++++++.....++.++||||.++.++... ....|||||+++. +..++.|.||..||+
T Consensus 209 y~~~s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~--~~sel~FsIK~LGD~ 286 (438)
T COG4097 209 YFGRSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEIEEFRMRPHPFTIACSH--EGSELRFSIKALGDF 286 (438)
T ss_pred HhhcccccceEEechhhcCcchheeecccCCcccccCCceEEEEeccccccCCCCCeeeeeCC--CCceEEEEehhhhhh
Confidence 3334433 35566667778888888887777778999999999998653 4568999999985 445899999999999
Q ss_pred cHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCC-eEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEE
Q 011270 158 TSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYD-SLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQL 236 (489)
Q Consensus 158 T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~-~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~l 236 (489)
|+.|++.++ +|.++.||||||.+. ++++. +.|+||||||||||+|+++.+..+. ..+.++|
T Consensus 287 Tk~l~dnLk----------~G~k~~vdGPYG~F~--~~~g~~~QVWIAGGIGITPFis~l~~l~~~~------s~~~V~L 348 (438)
T COG4097 287 TKTLKDNLK----------VGTKLEVDGPYGKFD--FERGLNTQVWIAGGIGITPFISMLFTLAERK------SDPPVHL 348 (438)
T ss_pred hHHHHHhcc----------CCceEEEecCcceee--cccCCcccEEEecCcCcchHHHHHHhhcccc------cCCceEE
Confidence 999999887 699999999999985 44444 4999999999999999999988742 3478999
Q ss_pred EEEeCCcchhhhHHhHhHHhhhccCCCcceEEEE
Q 011270 237 IYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKV 270 (489)
Q Consensus 237 vw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~ 270 (489)
+|++|+.++..+.+++....+ +.+++++++
T Consensus 349 ~Y~~~n~e~~~y~~eLr~~~q----kl~~~~lHi 378 (438)
T COG4097 349 FYCSRNWEEALYAEELRALAQ----KLPNVVLHI 378 (438)
T ss_pred EEEecCCchhHHHHHHHHHHh----cCCCeEEEE
Confidence 999999999999999876543 335666666
No 6
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=100.00 E-value=4.3e-31 Score=250.93 Aligned_cols=157 Identities=31% Similarity=0.565 Sum_probs=125.8
Q ss_pred EEEEEeC-CCeEEEEeecCCCCcccCCeEEEEecCCC-CCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHHHHHhc
Q 011270 91 LSARVFP-SKAIELILPKHAGLKFTPTSVIFMKIPSI-SKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAE 168 (489)
Q Consensus 91 v~~~~~~-~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~-s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~~~~~~ 168 (489)
++++.++ +++++++++.+..+.|+||||++|++|.. +.+++|||||+|.|.++++.++|+||..+++|+++.+.+...
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 4567788 99999999988788999999999999988 788999999999985325899999999855666666655411
Q ss_pred ccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhh
Q 011270 169 LDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICL 248 (489)
Q Consensus 169 ~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~ 248 (489)
.+...++++.|+||||.+..+...++++||||||+||||++|++++++.+..+ ....++++|+|++|+.+++.|
T Consensus 82 ----~~~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~--~~~~~~v~l~w~~r~~~~~~~ 155 (210)
T cd06186 82 ----PGGGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK--TSRTRRVKLVWVVRDREDLEW 155 (210)
T ss_pred ----cCCCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc--cCCccEEEEEEEECCHHHhHH
Confidence 12235788999999999864556789999999999999999999999875311 113478999999999999766
Q ss_pred HHhHh
Q 011270 249 LNSIS 253 (489)
Q Consensus 249 ~~~l~ 253 (489)
+.+.+
T Consensus 156 ~~~~l 160 (210)
T cd06186 156 FLDEL 160 (210)
T ss_pred HHHHH
Confidence 65543
No 7
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.96 E-value=5.7e-28 Score=231.91 Aligned_cols=203 Identities=18% Similarity=0.225 Sum_probs=160.4
Q ss_pred eEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHHHHH
Q 011270 89 CILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMIH 166 (489)
Q Consensus 89 ~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~~~~ 166 (489)
++++++.++++++++++..+..+.|+||||+.|.+|.. .+|||||+|.|. +++.++|+||.. |.+|++|.+.++
T Consensus 2 ~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~-~~~~l~~~vk~~~~G~~s~~l~~~l~ 77 (224)
T cd06189 2 KVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPH-EDGEIELHIRAVPGGSFSDYVFEELK 77 (224)
T ss_pred EEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCC-CCCeEEEEEEecCCCccHHHHHHhcc
Confidence 46788889999999999887778999999999999864 589999999874 467899999985 889999987665
Q ss_pred hcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchh
Q 011270 167 AELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 246 (489)
Q Consensus 167 ~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l 246 (489)
+|+++.|.||||.+..+...+++++|||||+||||++++++++..+. ..++++|+|++|+.+++
T Consensus 78 ----------~G~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~------~~~~v~l~~~~r~~~~~ 141 (224)
T cd06189 78 ----------ENGLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG------SKRPIHLYWGARTEEDL 141 (224)
T ss_pred ----------CCCEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhc
Confidence 58999999999998755445789999999999999999999998752 34689999999999999
Q ss_pred hhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 247 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 247 ~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
.+.+++.++.. +..++++.++++++++.+.+..|++++....... .. ....+|.||++.|+.++.
T Consensus 142 ~~~~~l~~l~~----~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~~-~~--~~~~v~vCGp~~m~~~~~ 206 (224)
T cd06189 142 YLDELLEAWAE----AHPNFTYVPVLSEPEEGWQGRTGLVHEAVLEDFP-DL--SDFDVYACGSPEMVYAAR 206 (224)
T ss_pred cCHHHHHHHHH----hCCCeEEEEEeCCCCcCCccccccHHHHHHhhcc-Cc--cccEEEEECCHHHHHHHH
Confidence 98888765442 2357888888898776677777888765443321 11 233455556666776653
No 8
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.96 E-value=1.2e-27 Score=230.76 Aligned_cols=167 Identities=23% Similarity=0.395 Sum_probs=135.4
Q ss_pred ceeEEEEEEeCCCeEEEEeecCC--CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHA--GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLY 162 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~--~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~ 162 (489)
+.++++++.+++++.++++..+. .+.|+||||+.|.+|+.+ .+|||||+|.|. +++.++|+||.. |.+|..|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~-~~~~l~l~vk~~~~G~~s~~l~ 78 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPA-DPGRLEFIIKKYPGGLFSSFLD 78 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCC-CCCEEEEEEEECCCCchhhHHh
Confidence 35678889999999998886543 578999999999998643 789999999885 457899999984 77888888
Q ss_pred HHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC
Q 011270 163 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 242 (489)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~ 242 (489)
+.++ +|+++.+.||||.+......+++++|||||+||||++++++++.... ..++++|+|++|+
T Consensus 79 ~~l~----------~G~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~ 142 (232)
T cd06212 79 DGLA----------VGDPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG------SDRPVRFFYGART 142 (232)
T ss_pred hcCC----------CCCEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC------CCCcEEEEEeccc
Confidence 7444 58999999999998755445789999999999999999999998752 2367999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCcceEEEEEEeCCC
Q 011270 243 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE 276 (489)
Q Consensus 243 ~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~ 276 (489)
.+++.+.+++..... ...++++.++++++.
T Consensus 143 ~~~~~~~~~l~~l~~----~~~~~~~~~~~s~~~ 172 (232)
T cd06212 143 ARDLFYLEEIAALGE----KIPDFTFIPALSESP 172 (232)
T ss_pred hHHhccHHHHHHHHH----hCCCEEEEEEECCCC
Confidence 999998888765432 234677777777654
No 9
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.96 E-value=1.5e-27 Score=228.42 Aligned_cols=151 Identities=21% Similarity=0.353 Sum_probs=121.8
Q ss_pred EEEEeCCCeEEEEeecCCC---CcccCCeEEEEecCCC----------------CCcceeeeEEeecCCCC--CCeEEEE
Q 011270 92 SARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSI----------------SKFQWHSFSITSSSSVD--DQTMSLI 150 (489)
Q Consensus 92 ~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~~----------------s~~~~hPFSIas~p~~~--~~~l~l~ 150 (489)
+.+.+++++.++++..+.+ +.|+|||||.|.+|.. +...+|||||+|.|.++ .+.++|+
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~ 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence 3456789999999987766 8999999999999753 12357999999998633 3789999
Q ss_pred EEeCCCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCC---CCCCeEEEEEeCCChhhHHHHHHHHHHhhcccC
Q 011270 151 VKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDF---LRYDSLLLVAGGIGITPFLSILQEIASAQSNRK 227 (489)
Q Consensus 151 Ik~~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~---~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~ 227 (489)
||..|++|++|++..... ...|+.+.++||||.+..+. ..+++++|||||+||||+++++++++...
T Consensus 82 vk~~G~~T~~L~~~~~~~------~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~---- 151 (220)
T cd06197 82 VRKKGPVTGFLFQVARRL------REQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSR---- 151 (220)
T ss_pred EEeCCCCCHHHHHhhhcc------cCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcc----
Confidence 999999999999876511 11278999999999986543 35789999999999999999999998642
Q ss_pred CCCCceEEEEEEeCCcchhhhHHhHh
Q 011270 228 YRFPSKVQLIYVIKSSQEICLLNSIS 253 (489)
Q Consensus 228 ~~~~~~i~lvw~~r~~~~l~~~~~l~ 253 (489)
...++++|+|++|+.+++.+.+++.
T Consensus 152 -~~~~~v~l~~~~r~~~~~~~~~el~ 176 (220)
T cd06197 152 -NTTWDITLLWSLREDDLPLVMDTLV 176 (220)
T ss_pred -cCCCcEEEEEEecchhhHHHHHHHH
Confidence 1236899999999999988877763
No 10
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.96 E-value=1.7e-27 Score=229.48 Aligned_cols=206 Identities=18% Similarity=0.197 Sum_probs=160.4
Q ss_pred eEEEEEEeCCCeEEEEeecCCC--CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHHH
Q 011270 89 CILSARVFPSKAIELILPKHAG--LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQM 164 (489)
Q Consensus 89 ~vv~~~~~~~~~~~l~~~~~~~--~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~~ 164 (489)
++++++.+++++.++++..+.. +.|+||||+.|.+|..+...+|||||+|.|. +++.++|+||.. |.+|+.|.+.
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-~~~~l~~~vk~~~~G~~s~~l~~~ 80 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPS-RPDSLSITVKRVPGGLVSNWLHDN 80 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCC-CCCcEEEEEEEcCCCcchHHHHhc
Confidence 5678888999999999988765 7899999999999866666689999999885 556799999986 8899998765
Q ss_pred HHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcc
Q 011270 165 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 244 (489)
Q Consensus 165 ~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~ 244 (489)
++ +|+.+.|.||||.+..+....+++||||||+||||++++++++.... ..++++++|++|+.+
T Consensus 81 ~~----------~G~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~ 144 (231)
T cd06215 81 LK----------VGDELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR------PDADIVFIHSARSPA 144 (231)
T ss_pred CC----------CCCEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC------CCCcEEEEEecCChh
Confidence 44 58999999999998654344789999999999999999999998642 246799999999999
Q ss_pred hhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCC-CcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHH
Q 011270 245 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQS-SVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 245 ~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~-~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav 317 (489)
++.+.+++..... +..++++++++|++++. +.+..|++++..+.+.........++ .||++.|+.++
T Consensus 145 ~~~~~~~l~~l~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~v~--icGp~~m~~~~ 212 (231)
T cd06215 145 DIIFADELEELAR----RHPNFRLHLILEQPAPGAWGGYRGRLNAELLALLVPDLKERTVF--VCGPAGFMKAV 212 (231)
T ss_pred hhhHHHHHHHHHH----HCCCeEEEEEEccCCCCcccccCCcCCHHHHHHhcCCccCCeEE--EECCHHHHHHH
Confidence 9998888765443 23578899999987664 66777888765554433222223444 55555666655
No 11
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.95 E-value=2.8e-27 Score=229.96 Aligned_cols=216 Identities=21% Similarity=0.285 Sum_probs=163.3
Q ss_pred HHHHHHHhhhc-----CceeEEEEEEeCCCeEEEEeecCCC-CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEE
Q 011270 75 LDKLLRFIQSR-----PETCILSARVFPSKAIELILPKHAG-LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMS 148 (489)
Q Consensus 75 ~dr~~R~~r~~-----~~~~vv~~~~~~~~~~~l~~~~~~~-~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~ 148 (489)
.||++|+++.. ...++++++.+++++.++++..+.. ..|+||||+.|.+|..+...+|||||+|.|..+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~ 81 (243)
T cd06216 2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT 81 (243)
T ss_pred chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence 48888887642 2356788888999999999987654 58999999999998666667899999998731367899
Q ss_pred EEEEeC--CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhccc
Q 011270 149 LIVKCD--GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNR 226 (489)
Q Consensus 149 l~Ik~~--G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~ 226 (489)
|+||.. |.+|.+|++.++ +|+++.++||||.+..+...+++++|||||+||||++|+++++....
T Consensus 82 ~~ik~~~~G~~s~~l~~~~~----------~Gd~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~--- 148 (243)
T cd06216 82 LTVKAQPDGLVSNWLVNHLA----------PGDVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG--- 148 (243)
T ss_pred EEEEEcCCCcchhHHHhcCC----------CCCEEEEECCceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC---
Confidence 999996 889999987544 58999999999997655444789999999999999999999998652
Q ss_pred CCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEe
Q 011270 227 KYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVN 306 (489)
Q Consensus 227 ~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~ 306 (489)
..+++.++|++|+.+++.+.+++.+... +..++++++++|++ +..|++++..+.+........ .++
T Consensus 149 ---~~~~i~l~~~~r~~~~~~~~~el~~l~~----~~~~~~~~~~~s~~-----~~~g~~~~~~l~~~~~~~~~~--~vy 214 (243)
T cd06216 149 ---PTADVVLLYYARTREDVIFADELRALAA----QHPNLRLHLLYTRE-----ELDGRLSAAHLDAVVPDLADR--QVY 214 (243)
T ss_pred ---CCCCEEEEEEcCChhhhHHHHHHHHHHH----hCCCeEEEEEEcCC-----ccCCCCCHHHHHHhccCcccC--eEE
Confidence 3478999999999999988888865432 23578888888875 334666655444432222233 444
Q ss_pred cCCcHHHHHHH
Q 011270 307 GLESLIWMAAL 317 (489)
Q Consensus 307 g~g~~~~~aav 317 (489)
.||++.|+.++
T Consensus 215 vcGp~~m~~~~ 225 (243)
T cd06216 215 ACGPPGFLDAA 225 (243)
T ss_pred EECCHHHHHHH
Confidence 55555666655
No 12
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.95 E-value=2.6e-27 Score=229.08 Aligned_cols=207 Identities=18% Similarity=0.259 Sum_probs=158.4
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCC------CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCcc
Q 011270 87 ETCILSARVFPSKAIELILPKHAG------LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWT 158 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~------~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T 158 (489)
...+++++.++++++++++..+.+ +.|+||||+.|.+|.. ..+|||||+|.|. +++.++|+||.. |.+|
T Consensus 3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~-~~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--DTRRSYSLANTPN-WDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCC--ccceecccCCCCC-CCCEEEEEEEEcCCCccc
Confidence 456888999999999999987654 7899999999999853 3689999999875 467899999974 7789
Q ss_pred HHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEE
Q 011270 159 SSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIY 238 (489)
Q Consensus 159 ~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw 238 (489)
..|.+.++ +|+.+.|.||+|.+..+....++++|||||+||||++++++++.... ...+++|+|
T Consensus 80 ~~l~~~~~----------~Gd~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~------~~~~v~l~~ 143 (236)
T cd06210 80 TYLETRAK----------VGQRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG------EPQEARLFF 143 (236)
T ss_pred hhhhhCcC----------CCCEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC------CCceEEEEE
Confidence 99987444 58999999999998655445678999999999999999999988642 236899999
Q ss_pred EeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 239 VIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 239 ~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
++|+.+++.+.+++.+... ...+++++++++++++.+.+..|++.+..............+| .||++.|+.++.
T Consensus 144 ~~r~~~~~~~~~~l~~l~~----~~~~~~~~~~~s~~~~~~~~~~g~~~~~l~~~l~~~~~~~~vy--icGp~~m~~~~~ 217 (236)
T cd06210 144 GVNTEAELFYLDELKRLAD----SLPNLTVRICVWRPGGEWEGYRGTVVDALREDLASSDAKPDIY--LCGPPGMVDAAF 217 (236)
T ss_pred ecCCHHHhhhHHHHHHHHH----hCCCeEEEEEEcCCCCCcCCccCcHHHHHHHhhcccCCCcEEE--EeCCHHHHHHHH
Confidence 9999999998888866543 2357889989988766666677777654322211221223444 455566666553
No 13
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.95 E-value=4.9e-27 Score=224.12 Aligned_cols=141 Identities=27% Similarity=0.472 Sum_probs=118.4
Q ss_pred CCeEEEEeecCCC-CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHHHHHhcccCCcCcC
Q 011270 98 SKAIELILPKHAG-LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQM 176 (489)
Q Consensus 98 ~~~~~l~~~~~~~-~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~~~~~~~~~~~~~~ 176 (489)
.++.++++..+.+ +.|+||||+.|.+|..+..++|||||+|.|. +++.++|+||..|++|+.|.+.++
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~~l~l~vk~~G~~t~~l~~~l~---------- 75 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPD-PDGRLRFTIKALGDYTRRLAERLK---------- 75 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCC-CCCeEEEEEEeCChHHHHHHHhCC----------
Confidence 3566777765554 7899999999999876667899999999874 457999999999999999986554
Q ss_pred cceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHh
Q 011270 177 RCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLL 256 (489)
Q Consensus 177 ~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l 256 (489)
+|+.+.|+||||.+..+.. +++++|||||+||||++++++++.... ..++++++|++|+.+++.+.+++.++.
T Consensus 76 ~G~~v~i~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~~l~~l~ 148 (216)
T cd06198 76 PGTRVTVEGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG------DARPVTLFYCVRDPEDAVFLDELRALA 148 (216)
T ss_pred CCCEEEEECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC------CCceEEEEEEECCHHHhhhHHHHHHHH
Confidence 5899999999999865433 789999999999999999999998752 247899999999999999888886643
No 14
>PRK08051 fre FMN reductase; Validated
Probab=99.95 E-value=4.8e-27 Score=226.77 Aligned_cols=205 Identities=15% Similarity=0.134 Sum_probs=157.1
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCC--CccHHHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDG--EWTSSLYQM 164 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G--~~T~~L~~~ 164 (489)
..++.+++.+++++.++++..+.++.|+||||+.|.+|.. ..|||||+|.|. +++.++|+||..+ ..+.++.+.
T Consensus 4 ~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~-~~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 4 SCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPR-EKGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred EEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCC-CCCcEEEEEEEcCCCcchHHHHHH
Confidence 4567888889999999999877778999999999998753 579999999885 5678999999854 356666655
Q ss_pred HHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcc
Q 011270 165 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 244 (489)
Q Consensus 165 ~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~ 244 (489)
++ +|+.|.|+||||.+..+....+++||||||+||||++++++++.... ..+++.|+|++|+.+
T Consensus 80 l~----------~G~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~------~~~~v~l~~g~r~~~ 143 (232)
T PRK08051 80 IL----------KDGEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQG------PNRPITLYWGGREED 143 (232)
T ss_pred cC----------CCCEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC------CCCcEEEEEEeccHH
Confidence 54 68999999999998655445688999999999999999999998752 347899999999999
Q ss_pred hhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 245 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 245 ~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
++.+.+++.+... +..+++++..++++++.+.+..|++++....+. .......+|+| ||+.|+.++.
T Consensus 144 ~~~~~~el~~l~~----~~~~~~~~~~~~~~~~~~~~~~g~v~~~l~~~~-~~~~~~~vyic--Gp~~m~~~v~ 210 (232)
T PRK08051 144 HLYDLDELEALAL----KHPNLHFVPVVEQPEEGWQGKTGTVLTAVMQDF-GSLAEYDIYIA--GRFEMAKIAR 210 (232)
T ss_pred HhhhhHHHHHHHH----HCCCcEEEEEeCCCCCCcccceeeehHHHHhhc-cCcccCEEEEE--CCHHHHHHHH
Confidence 9988888876543 225788888888877667667788776543222 12223445555 5555666653
No 15
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.95 E-value=6.7e-27 Score=225.89 Aligned_cols=209 Identities=18% Similarity=0.224 Sum_probs=159.8
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCC--CcccCCeEEEEecCCC-CCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAG--LKFTPTSVIFMKIPSI-SKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSL 161 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~--~~~~pGQ~v~l~~p~~-s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L 161 (489)
+.++++++.+++++.++++..+.. ..|+||||+.|.+|.. +...+|||||++.|. +++.++|+||.. |..|+.|
T Consensus 3 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~-~~~~l~l~v~~~~~G~~s~~l 81 (235)
T cd06217 3 VLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPT-QRGRVELTVKRVPGGEVSPYL 81 (235)
T ss_pred eEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCC-CCCeEEEEEEEcCCCcchHHH
Confidence 467889999999999999987766 7899999999999742 344679999999875 456899999985 6689888
Q ss_pred HHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeC
Q 011270 162 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 241 (489)
Q Consensus 162 ~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r 241 (489)
.+.++ +|+.+.+.||||.+..+....++++|||||+||||++++++++.... ...+++++|++|
T Consensus 82 ~~~l~----------~Gd~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~------~~~~i~l~~~~r 145 (235)
T cd06217 82 HDEVK----------VGDLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG------WPVPFRLLYSAR 145 (235)
T ss_pred HhcCC----------CCCEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC------CCceEEEEEecC
Confidence 77544 58999999999997654334689999999999999999999998752 246899999999
Q ss_pred CcchhhhHHhHhHHhhhccCCCcceEEEEEEeCC-CCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 242 SSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQE-EQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 242 ~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~-~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
+.+++.+.+++.+... +..++++..++|++ ++.+.+.+|++++..+.+.....+.. .++.|||+.|+.++.
T Consensus 146 ~~~~~~~~~el~~~~~----~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~v~icGp~~m~~~v~ 217 (235)
T cd06217 146 TAEDVIFRDELEQLAR----RHPNLHVTEALTRAAPADWLGPAGRITADLIAELVPPLAGR--RVYVCGPPAFVEAAT 217 (235)
T ss_pred CHHHhhHHHHHHHHHH----HCCCeEEEEEeCCCCCCCcCCcCcEeCHHHHHhhCCCccCC--EEEEECCHHHHHHHH
Confidence 9999988888866543 23568888888987 34455677888776554432222233 445555666666553
No 16
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.95 E-value=6.5e-27 Score=225.67 Aligned_cols=203 Identities=18% Similarity=0.322 Sum_probs=153.8
Q ss_pred EEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHHHHHhc
Q 011270 91 LSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMIHAE 168 (489)
Q Consensus 91 v~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~~~~~~ 168 (489)
++++.+++++.++++..+.++.|+||||+.|.+|..+ ..|||||+|.|. +.+.++|+||.. |.+|++|++.++
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~-~~~~~~~~vk~~~~G~~s~~l~~~~~-- 76 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLAN-ASGEWEFIIKRKPGGAASNALFDNLE-- 76 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCC-CCCEEEEEEEEcCCCcchHHHhhcCC--
Confidence 4667789999999998777788999999999998754 679999999875 457899999975 889999987544
Q ss_pred ccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhh
Q 011270 169 LDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICL 248 (489)
Q Consensus 169 ~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~ 248 (489)
+|+.+.|+||||.+..+....+++||||||+||||++++++++.... .....+++|+|++|+.+++.+
T Consensus 77 --------~g~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~----~~~~~~v~l~~~~r~~~~~~~ 144 (232)
T cd06190 77 --------PGDELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSP----YLSDRPVDLFYGGRTPSDLCA 144 (232)
T ss_pred --------CCCEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcc----cCCCCeEEEEEeecCHHHHhh
Confidence 58899999999998654445689999999999999999999998641 112478999999999999998
Q ss_pred HHhHhHHhhhccCCCcceEEEEEEeCCCC----CCcchhhhcchhhhhHhhhc-CCCCceEEecCCcHHHHHHH
Q 011270 249 LNSISPLLSNQQSKKWHLTLKVFVTQEEQ----SSVTVREVLNDLSLVRAVRF-GTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 249 ~~~l~~~l~~~~~~~~~l~v~~~vTr~~~----~~~~~~g~v~~~~~~~~~~~-~~~~~~~v~g~g~~~~~aav 317 (489)
.+++.++.. ...++++++.+++++. .+.+.+|++++.. .+.... .++..+|+|| ++.|+.++
T Consensus 145 ~~el~~l~~----~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l-~~~~~~~~~~~~vyiCG--p~~m~~~v 211 (232)
T cd06190 145 LDELSALVA----LGARLRVTPAVSDAGSGSAAGWDGPTGFVHEVV-EATLGDRLAEFEFYFAG--PPPMVDAV 211 (232)
T ss_pred HHHHHHHHH----hCCCEEEEEEeCCCCCCcCCCccCCcCcHHHHH-HhhccCCccccEEEEEC--CHHHHHHH
Confidence 888866443 2357788888887653 2556677777532 222222 2234455555 55565554
No 17
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.95 E-value=1.7e-26 Score=222.73 Aligned_cols=206 Identities=19% Similarity=0.212 Sum_probs=153.6
Q ss_pred eEEEEEEeCCCeEEEEeecCCC--CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHHH
Q 011270 89 CILSARVFPSKAIELILPKHAG--LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQM 164 (489)
Q Consensus 89 ~vv~~~~~~~~~~~l~~~~~~~--~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~~ 164 (489)
+|++++.+++++.++++..+.. +.|+||||+.|.++..+...+|||||+|.|. ++.++|.||.. |..|++|++.
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~~~G~~s~~l~~~ 79 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRVPGGRVSNYLREH 79 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEECCCCccchHHHhc
Confidence 4678888999999999976543 5899999999999755556789999999874 67899999985 8899999865
Q ss_pred HHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcc
Q 011270 165 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 244 (489)
Q Consensus 165 ~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~ 244 (489)
++ +|+++.|+||||.+..+....++++|||||+||||+++|++++.... ..++++|+|++|+.+
T Consensus 80 ~~----------~Gd~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~------~~~~v~l~~~~r~~~ 143 (231)
T cd06191 80 IQ----------PGMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA------PESDFTLIHSARTPA 143 (231)
T ss_pred CC----------CCCEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC------CCCCEEEEEecCCHH
Confidence 44 58999999999998655445689999999999999999999998642 236899999999999
Q ss_pred hhhhHHhHhHHhhhccCCCcceEEEEEEeCCCC--CCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 245 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQ--SSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 245 ~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~--~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
++.+.+++.+... +..++++.+++|+++. .+.+.++.+.+..............+|+||+ +.|+.++.
T Consensus 144 ~~~~~~el~~l~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vyicGp--~~mv~~~~ 213 (231)
T cd06191 144 DMIFAQELRELAD----KPQRLRLLCIFTRETLDSDLLHGRIDGEQSLGAALIPDRLEREAFICGP--AGMMDAVE 213 (231)
T ss_pred HHhHHHHHHHHHH----hCCCeEEEEEECCCCCCccccCCcccccHHHHHHhCccccCCeEEEECC--HHHHHHHH
Confidence 9998888865432 2368899999998653 3344445554333222222222344555554 45555553
No 18
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.95 E-value=1.2e-26 Score=225.10 Aligned_cols=206 Identities=18% Similarity=0.279 Sum_probs=157.2
Q ss_pred EEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCC-CCcceeeeEEeecCCCCCCeEEEEEEe--CCCccHHHHHHHH
Q 011270 90 ILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSI-SKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLYQMIH 166 (489)
Q Consensus 90 vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~-s~~~~hPFSIas~p~~~~~~l~l~Ik~--~G~~T~~L~~~~~ 166 (489)
+++++.+++++++++++.+..+.|+||||+.|.+|.. +...+|||||+|.|. ++.++|+||. .|..|+.|.+ ++
T Consensus 2 v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~--~~~i~~~i~~~~~G~~s~~l~~-l~ 78 (241)
T cd06195 2 VLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPY--EENLEFYIILVPDGPLTPRLFK-LK 78 (241)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCC--CCeEEEEEEEecCCCCchHHhc-CC
Confidence 5778889999999999887778899999999999876 666889999999874 4789999986 4899999875 33
Q ss_pred hcccCCcCcCcceeEEEe-CCCCCCCCCCC-CCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcc
Q 011270 167 AELDSDADQMRCIPVAIE-GPYGPATMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 244 (489)
Q Consensus 167 ~~~~~~~~~~~g~~v~v~-GPyG~~~~~~~-~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~ 244 (489)
+|+.+.+. ||+|.+..+.. ..++++|||||+||||++++++++.... ..++++|+|++|+.+
T Consensus 79 ----------~Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~------~~~~v~l~~~~r~~~ 142 (241)
T cd06195 79 ----------PGDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE------RFDKIVLVHGVRYAE 142 (241)
T ss_pred ----------CCCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC------CCCcEEEEEccCCHH
Confidence 58999999 99999865443 4689999999999999999999998542 347899999999999
Q ss_pred hhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhh----HhhhcC-CCCceEEecCCcHHHHHHHH
Q 011270 245 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLV----RAVRFG-TQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 245 ~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~----~~~~~~-~~~~~~v~g~g~~~~~aav~ 318 (489)
++.+.+++.++..+ ...++++.+++++++..+ +.+|++++.... +.+... ......++.||++.|+.++.
T Consensus 143 d~~~~~el~~l~~~---~~~~~~~~~~~s~~~~~~-~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~ 217 (241)
T cd06195 143 ELAYQDEIEALAKQ---YNGKFRYVPIVSREKENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQ 217 (241)
T ss_pred HhhhHHHHHHHHhh---cCCCEEEEEEECcCCccC-CCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHH
Confidence 99988888765422 135788888999887665 456777654331 111111 11334455556666766653
No 19
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.95 E-value=1.6e-26 Score=222.24 Aligned_cols=202 Identities=15% Similarity=0.294 Sum_probs=154.5
Q ss_pred eeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHHHH
Q 011270 88 TCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMI 165 (489)
Q Consensus 88 ~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~~~ 165 (489)
.++++++.++++++++++..++.+.|+||||+.|.+|... .+|||||+|.|. +++.++|+||.. |.+|++|.+.+
T Consensus 3 ~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~-~~~~l~~~vk~~~~G~~s~~l~~~l 79 (227)
T cd06213 3 GTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQ-GDGQLSFHIRKVPGGAFSGWLFGAD 79 (227)
T ss_pred EEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCC-CCCEEEEEEEECCCCcchHHHHhcC
Confidence 5678889999999999998877788999999999998643 689999999985 467899999975 88999998765
Q ss_pred HhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcch
Q 011270 166 HAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 245 (489)
Q Consensus 166 ~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~ 245 (489)
+ +|+.+.|+||||.+..+ ...+++||||||+||||++++++++.... ..++++++|++|+.++
T Consensus 80 ~----------~G~~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~------~~~~i~l~~~~r~~~~ 142 (227)
T cd06213 80 R----------TGERLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAG------TKRDVTLLFGARTQRD 142 (227)
T ss_pred C----------CCCEEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcC------CCCcEEEEEeeCCHHH
Confidence 5 58999999999998653 34579999999999999999999998652 2367999999999999
Q ss_pred hhhHHhHhHHhhhccCCCcceEEEEEEeCCCC--CCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHH
Q 011270 246 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQ--SSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 246 l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~--~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav 317 (489)
+.+.+++.+.... ...++++..+++++++ .+.+..|++++.. .+.. .+...+++|| ++.|+.++
T Consensus 143 ~~~~~~l~~l~~~---~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~l-~~~~--~~~~~v~~CG--p~~~~~~~ 208 (227)
T cd06213 143 LYALDEIAAIAAR---WRGRFRFIPVLSEEPADSSWKGARGLVTEHI-AEVL--LAATEAYLCG--PPAMIDAA 208 (227)
T ss_pred hccHHHHHHHHHh---ccCCeEEEEEecCCCCCCCccCCcccHHHHH-Hhhc--cCCCEEEEEC--CHHHHHHH
Confidence 9888887654322 1257888888887643 3455667776533 2222 2334455555 55555554
No 20
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.95 E-value=1.5e-26 Score=221.78 Aligned_cols=202 Identities=17% Similarity=0.275 Sum_probs=155.6
Q ss_pred EEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHHHHHhc
Q 011270 91 LSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMIHAE 168 (489)
Q Consensus 91 v~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~~~~~~ 168 (489)
++++.+++++.++++..+..+.|+||||+.|.+|..+. .+|||||+|.|. +.+.++|+||.. |.+|++|.+.++
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~-~~~~~~~~i~~~~~G~~s~~l~~~l~-- 77 (224)
T cd06187 2 VSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPN-EDGEIEFHVRAVPGGRVSNALHDELK-- 77 (224)
T ss_pred eeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCC-CCCEEEEEEEeCCCCcchHHHhhcCc--
Confidence 56778899999999987777899999999999987543 689999999875 457899999986 889999987544
Q ss_pred ccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhh
Q 011270 169 LDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICL 248 (489)
Q Consensus 169 ~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~ 248 (489)
+|+.+.|.||+|.+......+++++|||||+||||++|+++++...+ ...++.++|++|+.+++.+
T Consensus 78 --------~G~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~------~~~~v~l~~~~~~~~~~~~ 143 (224)
T cd06187 78 --------VGDRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG------EPRPVHLFFGARTERDLYD 143 (224)
T ss_pred --------cCCEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC------CCCCEEEEEecCChhhhcC
Confidence 58999999999998654444789999999999999999999998642 3468999999999999999
Q ss_pred HHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHH
Q 011270 249 LNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 249 ~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav 317 (489)
.+++..+.. +..++++.++++++++.+.+.+|++++...... .......+++ ||++.|+.++
T Consensus 144 ~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~v~v--cGp~~~~~~v 205 (224)
T cd06187 144 LEGLLALAA----RHPWLRVVPVVSHEEGAWTGRRGLVTDVVGRDG-PDWADHDIYI--CGPPAMVDAT 205 (224)
T ss_pred hHHHHHHHH----hCCCeEEEEEeCCCCCccCCCcccHHHHHHHhc-cccccCEEEE--ECCHHHHHHH
Confidence 888875432 235678888888776656666777776543221 1112234455 5555556555
No 21
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.95 E-value=1.9e-26 Score=223.41 Aligned_cols=206 Identities=16% Similarity=0.207 Sum_probs=156.2
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCC--CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAG--LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLY 162 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~--~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~ 162 (489)
..++++++.+++++.++++..+.+ ..|+||||+.|.+|... ..|||||+|.|. +++.++|+||.. |..|+.|+
T Consensus 8 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~-~~~~l~l~i~~~~~G~~s~~l~ 84 (238)
T cd06211 8 EGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGYE--GTRAFSIASSPS-DAGEIELHIRLVPGGIATTYVH 84 (238)
T ss_pred eEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCCC--CccccccCCCCC-CCCEEEEEEEECCCCcchhhHh
Confidence 467888999999999999987655 48999999999998642 679999999875 567899999985 88999997
Q ss_pred HHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC
Q 011270 163 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 242 (489)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~ 242 (489)
+.++ +|+++.|.||+|.+.......+++||||||+||||+++++++++.++ ..+++.|+|++|+
T Consensus 85 ~~l~----------~G~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~------~~~~v~l~~~~r~ 148 (238)
T cd06211 85 KQLK----------EGDELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERG------DTRKITLFFGART 148 (238)
T ss_pred hcCC----------CCCEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcC------CCCcEEEEEecCC
Confidence 6444 58999999999998654444589999999999999999999998752 2368999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCcceEEEEEEeCCC--CCCcchhhhcchhhhhHhhh-cCCCCceEEecCCcHHHHHHHH
Q 011270 243 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE--QSSVTVREVLNDLSLVRAVR-FGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 243 ~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~--~~~~~~~g~v~~~~~~~~~~-~~~~~~~~v~g~g~~~~~aav~ 318 (489)
.+++.+.+++.+... ...++++...+++++ ..|.+.+|++++. +.+... ..+...+++ ||++.|+.++.
T Consensus 149 ~~~~~~~~~l~~l~~----~~~~~~~~~~~s~~~~~~~~~~~~g~v~~~-l~~~~~~~~~~~~vyv--CGp~~m~~~~~ 220 (238)
T cd06211 149 RAELYYLDEFEALEK----DHPNFKYVPALSREPPESNWKGFTGFVHDA-AKKHFKNDFRGHKAYL--CGPPPMIDACI 220 (238)
T ss_pred hhhhccHHHHHHHHH----hCCCeEEEEEECCCCCCcCcccccCcHHHH-HHHhcccccccCEEEE--ECCHHHHHHHH
Confidence 999988888765432 235688888888764 3455667888763 222222 122334445 55556666553
No 22
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.95 E-value=4.4e-26 Score=222.01 Aligned_cols=208 Identities=17% Similarity=0.216 Sum_probs=158.3
Q ss_pred CceeEEEEEEeCCCeEEEEeecCCC---CcccCCeEEEEecCCCC--CcceeeeEEeecCCCCCCeEEEEEEeC--CCcc
Q 011270 86 PETCILSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSIS--KFQWHSFSITSSSSVDDQTMSLIVKCD--GEWT 158 (489)
Q Consensus 86 ~~~~vv~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~~s--~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T 158 (489)
+..++++++.+++++.++++..+.. +.|+||||+.|.++..+ ...+|||||+|.|. ++.++|+||.. |..|
T Consensus 7 ~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~l~~~ik~~~~G~~s 84 (247)
T cd06184 7 RPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPN--GDYYRISVKREPGGLVS 84 (247)
T ss_pred EEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCC--CCeEEEEEEEcCCCcch
Confidence 4567889999999999999977643 68999999999996543 45789999999874 45899999986 9999
Q ss_pred HHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEE
Q 011270 159 SSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIY 238 (489)
Q Consensus 159 ~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw 238 (489)
++|.+.++ +|+++.|+||||.+..+...+++++|||||+||||++++++++.... ..++++|+|
T Consensus 85 ~~l~~~~~----------~Gd~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~------~~~~i~l~~ 148 (247)
T cd06184 85 NYLHDNVK----------VGDVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG------PGRPVTFIH 148 (247)
T ss_pred HHHHhcCC----------CCCEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC------CCCcEEEEE
Confidence 99987444 58999999999998665446789999999999999999999998742 347899999
Q ss_pred EeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCC----cchhhhcchhhhhHhhhcCCCCceEEecCCcHHHH
Q 011270 239 VIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS----VTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWM 314 (489)
Q Consensus 239 ~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~----~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~ 314 (489)
++|+.+++.+.+++..+.. ...+++++++++++...+ .+..|+++...+.+. ...+.. .++.||++.|+
T Consensus 149 ~~r~~~~~~~~~~l~~l~~----~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~--~v~icGp~~m~ 221 (247)
T cd06184 149 AARNSAVHAFRDELEELAA----RLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLREL-LLPADA--DFYLCGPVPFM 221 (247)
T ss_pred EcCchhhHHHHHHHHHHHh----hCCCeEEEEEECCCCcccccccccccCccCHHHHhhc-cCCCCC--EEEEECCHHHH
Confidence 9999999988888776533 235788999999875443 345677765544332 112233 44555555566
Q ss_pred HHHH
Q 011270 315 AALV 318 (489)
Q Consensus 315 aav~ 318 (489)
.++.
T Consensus 222 ~~v~ 225 (247)
T cd06184 222 QAVR 225 (247)
T ss_pred HHHH
Confidence 6553
No 23
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.95 E-value=3e-26 Score=219.14 Aligned_cols=202 Identities=19% Similarity=0.317 Sum_probs=153.5
Q ss_pred EEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHHHHHhcc
Q 011270 92 SARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMIHAEL 169 (489)
Q Consensus 92 ~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~~~~~~~ 169 (489)
+++.+++++.++++..+....|+||||+.|.+|..+...+|||||+|.|. +.+.++|+||.. |.+|++|.+. +
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~~~~l~vk~~~~G~~s~~l~~~-~--- 76 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPD-EEGELELTVKIVPGGPFSAWLHDL-K--- 76 (223)
T ss_pred ceEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCC-CCCeEEEEEEEeCCCchhhHHhcC-C---
Confidence 34566789999999877778899999999999876667899999999874 457999999997 9999999865 2
Q ss_pred cCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhhH
Q 011270 170 DSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLL 249 (489)
Q Consensus 170 ~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~ 249 (489)
+|+++.+.||+|.+......+++++|||||+||||++++++++.... ...+++++|++|+.+++.+.
T Consensus 77 -------~G~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~ 143 (223)
T cd00322 77 -------PGDEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK------PGGEITLLYGARTPADLLFL 143 (223)
T ss_pred -------CCCEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC------CCCcEEEEEecCCHHHhhHH
Confidence 58999999999998655567789999999999999999999998752 34789999999999999999
Q ss_pred HhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhH-hhhcCCCCceEEecCCcHHHHHHH
Q 011270 250 NSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVR-AVRFGTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 250 ~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~-~~~~~~~~~~~v~g~g~~~~~aav 317 (489)
+++.+... ...++++.+++++++..+.+..+.+....... .....+...+|+|||++ |+.++
T Consensus 144 ~el~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~~--m~~~~ 206 (223)
T cd00322 144 DELEELAK----EGPNFRLVLALSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGPPA--MAKAV 206 (223)
T ss_pred HHHHHHHH----hCCCeEEEEEecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECCHH--HHHHH
Confidence 88876543 23578888889887766554444443211111 11222234455555554 55554
No 24
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.95 E-value=2.6e-26 Score=233.78 Aligned_cols=205 Identities=17% Similarity=0.308 Sum_probs=159.9
Q ss_pred ceeEEEEEEeCCCeEEEEeecC---CCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEe--CCCccHHH
Q 011270 87 ETCILSARVFPSKAIELILPKH---AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSL 161 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~---~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~--~G~~T~~L 161 (489)
..+|++++.+++++.++++..+ +.+.|+||||+.|.+|... .+|||||+|.|. +++.++|+||. .|..|+.|
T Consensus 108 ~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~--~~R~ySias~p~-~~~~l~~~ik~~~~G~~s~~L 184 (340)
T PRK11872 108 SGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGTD--DWRSYSFANRPN-ATNQLQFLIRLLPDGVMSNYL 184 (340)
T ss_pred eEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCCC--ceeecccCCCCC-CCCeEEEEEEECCCCcchhhH
Confidence 4678888999999999999765 4678999999999998643 589999999885 56899999998 46678888
Q ss_pred HHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeC
Q 011270 162 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 241 (489)
Q Consensus 162 ~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r 241 (489)
++.++ +|+.+.|+||||.+..+ ...+++||||||+||||++||+++++..+ ..++++|+|++|
T Consensus 185 ~~~l~----------~G~~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~------~~~~v~l~~g~r 247 (340)
T PRK11872 185 RERCQ----------VGDEILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQG------CSPPVHLYYGVR 247 (340)
T ss_pred hhCCC----------CCCEEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcC------CCCcEEEEEecC
Confidence 86554 68999999999998754 33579999999999999999999998642 236799999999
Q ss_pred CcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 242 SSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 242 ~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
+.+++.+.+++.++.. ...+++++..++++++.|.+..|++++......+ ......++.|||+.|+.++.
T Consensus 248 ~~~dl~~~~el~~~~~----~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~l---~~~~~~vy~CGp~~mv~~~~ 317 (340)
T PRK11872 248 HAADLCELQRLAAYAE----RLPNFRYHPVVSKASADWQGKRGYIHEHFDKAQL---RDQAFDMYLCGPPPMVEAVK 317 (340)
T ss_pred ChHHhccHHHHHHHHH----HCCCcEEEEEEeCCCCcCCCceeeccHHHHHhhc---CcCCCEEEEeCCHHHHHHHH
Confidence 9999999988876543 2357888888888777787788888876543332 11222345555566776664
No 25
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.94 E-value=2.7e-26 Score=228.03 Aligned_cols=210 Identities=15% Similarity=0.237 Sum_probs=157.7
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCC--CcccCCeEEEEecCCC-----------------------------CCcceeeeE
Q 011270 87 ETCILSARVFPSKAIELILPKHAG--LKFTPTSVIFMKIPSI-----------------------------SKFQWHSFS 135 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~--~~~~pGQ~v~l~~p~~-----------------------------s~~~~hPFS 135 (489)
..++++++.+++++.++++..+.+ +.|+||||+.|.+|.. +....||||
T Consensus 11 ~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~yS 90 (283)
T cd06188 11 ECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAYS 90 (283)
T ss_pred EEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCccccccC
Confidence 456788888899999999987655 7899999999999853 122459999
Q ss_pred EeecCCCCCCeEEEEEEe-----------CCCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEE
Q 011270 136 ITSSSSVDDQTMSLIVKC-----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVA 204 (489)
Q Consensus 136 Ias~p~~~~~~l~l~Ik~-----------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIA 204 (489)
|+|.|. +++.++|+||. .|..|+.|.+ ++ +|+.+.|.||+|.+..+ ...+++||||
T Consensus 91 ias~p~-~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~i~gP~G~f~l~-~~~~~~vlIA 157 (283)
T cd06188 91 LANYPA-EEGELKLNVRIATPPPGNSDIPPGIGSSYIFN-LK----------PGDKVTASGPFGEFFIK-DTDREMVFIG 157 (283)
T ss_pred cCCCCC-CCCeEEEEEEEeccCCccCCCCCceehhHHhc-CC----------CCCEEEEECcccccccc-CCCCcEEEEE
Confidence 999985 56789999996 6778899986 43 59999999999998754 3567999999
Q ss_pred eCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCC--CCCcch
Q 011270 205 GGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE--QSSVTV 282 (489)
Q Consensus 205 GGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~--~~~~~~ 282 (489)
||+||||+++|+++++... ...++++|+|++|+.+++.+.+++.++.. ...++++.+.+|+++ +.+.+.
T Consensus 158 gGtGItP~~s~l~~~~~~~-----~~~~~v~l~~g~r~~~d~~~~~el~~l~~----~~~~~~~~~~~s~~~~~~~~~~~ 228 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKTL-----KSKRKISFWYGARSLKELFYQEEFEALEK----EFPNFKYHPVLSEPQPEDNWDGY 228 (283)
T ss_pred ecccHhHHHHHHHHHHhcC-----CCCceEEEEEecCCHHHhhHHHHHHHHHH----HCCCeEEEEEECCCCccCCCCCc
Confidence 9999999999999987642 11368999999999999999888866543 235678888888765 445667
Q ss_pred hhhcchhhhhHhhhc-CCCCceEEecCCcHHHHHHHH
Q 011270 283 REVLNDLSLVRAVRF-GTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 283 ~g~v~~~~~~~~~~~-~~~~~~~v~g~g~~~~~aav~ 318 (489)
+|++++......... .+.....++.||++.||.++.
T Consensus 229 ~G~v~~~~~~~~~~~~~~~~~~~vyiCGP~~m~~~~~ 265 (283)
T cd06188 229 TGFIHQVLLENYLKKHPAPEDIEFYLCGPPPMNSAVI 265 (283)
T ss_pred ceeecHHHHHHHhccCCCCCCeEEEEECCHHHHHHHH
Confidence 788887665544321 112233344555556666553
No 26
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.94 E-value=5.1e-26 Score=218.90 Aligned_cols=203 Identities=19% Similarity=0.320 Sum_probs=155.5
Q ss_pred ceeEEEEEEeCCCeEEEEeecCC--CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHA--GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLY 162 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~--~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~ 162 (489)
+.+|++++.+++++.++++..+. .+.|+||||+.|++|... .+|||||+|.|. ++.++|+||.. |..|+.|.
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ysi~s~~~--~~~i~~~i~~~~~G~~s~~l~ 78 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGTD--ETRSYSFSSAPG--DPRLEFLIRLLPGGAMSSYLR 78 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCCC--cccccccccCCC--CCeEEEEEEEcCCCcchhhHH
Confidence 35678899999999999998765 578999999999998643 689999999874 37899999974 77899998
Q ss_pred HHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC
Q 011270 163 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 242 (489)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~ 242 (489)
+.++ +|+.+.|.||+|.+..+ ...++++|||||+||||++++++++.... ...+++|+|++|+
T Consensus 79 ~~l~----------~G~~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~------~~~~v~l~~~~r~ 141 (228)
T cd06209 79 DRAQ----------PGDRLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDG------SAHPVHLVYGVTR 141 (228)
T ss_pred hccC----------CCCEEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcC------CCCcEEEEEecCC
Confidence 7544 58999999999998654 33478999999999999999999998752 3468999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 243 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 243 ~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
.+++.+.+++.++.. ...++++++++++++. +.+.+|++++........ ..+..+++ ||++.|+.++.
T Consensus 142 ~~~~~~~~~l~~l~~----~~~~~~~~~~~s~~~~-~~~~~g~v~~~~~~~~~~-~~~~~v~i--cGp~~m~~~~~ 209 (228)
T cd06209 142 DADLVELDRLEALAE----RLPGFSFRTVVADPDS-WHPRKGYVTDHLEAEDLN-DGDVDVYL--CGPPPMVDAVR 209 (228)
T ss_pred HHHhccHHHHHHHHH----hCCCeEEEEEEcCCCc-cCCCcCCccHHHHHhhcc-CCCcEEEE--eCCHHHHHHHH
Confidence 999999888876543 2357889999998655 555667776543332211 12234444 45556666553
No 27
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.94 E-value=1.1e-25 Score=218.41 Aligned_cols=211 Identities=19% Similarity=0.227 Sum_probs=161.5
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCC----CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAG----LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSS 160 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~----~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~ 160 (489)
.+++++++.+++++.++++..+.+ +.|+||||+.|.+|..+...+||||++|.|. ++.++|+||.. |..|.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~--~~~l~~~i~~~~~G~~s~~ 80 (241)
T cd06214 3 PLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPG--DDELRITVKRVPGGRFSNW 80 (241)
T ss_pred eEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCC--CCcEEEEEEEcCCCccchh
Confidence 467889999999999999987654 5899999999999865666889999999874 34899999985 778999
Q ss_pred HHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCC-CCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEE
Q 011270 161 LYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYV 239 (489)
Q Consensus 161 L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~-~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~ 239 (489)
|.+.++ +|+.+.|.||+|.+..... .+++++|||||+||||++++++++.... ..++++|+|+
T Consensus 81 l~~~~~----------~G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~------~~~~v~l~~~ 144 (241)
T cd06214 81 ANDELK----------AGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE------PASRVTLVYG 144 (241)
T ss_pred HHhccC----------CCCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC------CCCcEEEEEE
Confidence 876544 5889999999998865544 5789999999999999999999988752 2478999999
Q ss_pred eCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhc--CCCCceEEecCCcHHHHHHH
Q 011270 240 IKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRF--GTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 240 ~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~--~~~~~~~v~g~g~~~~~aav 317 (489)
+|+.+++.+.+++.++... ...++++..++|+++..+.+..|.+++....+.... .+.....++.||++.|+.++
T Consensus 145 ~r~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp~~mv~~v 221 (241)
T cd06214 145 NRTEASVIFREELADLKAR---YPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAV 221 (241)
T ss_pred eCCHHHhhHHHHHHHHHHh---CcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECCHHHHHHH
Confidence 9999999888887655322 224788888888877666666788876655444321 12233455556666666665
Q ss_pred H
Q 011270 318 V 318 (489)
Q Consensus 318 ~ 318 (489)
.
T Consensus 222 ~ 222 (241)
T cd06214 222 E 222 (241)
T ss_pred H
Confidence 4
No 28
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.94 E-value=4.9e-26 Score=231.23 Aligned_cols=207 Identities=16% Similarity=0.156 Sum_probs=155.8
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQM 164 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~~ 164 (489)
..+|.+++.+++++..+++..+..+.|+||||+.|.+|... ..+|||||+|.|. +++.++|+||.. |..|++|++.
T Consensus 11 ~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~~-~~~R~ySias~p~-~~~~l~i~Vk~~~~G~~S~~L~~~ 88 (332)
T PRK10684 11 RMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNSA-ETLRAYTLSSTPG-VSEFITLTVRRIDDGVGSQWLTRD 88 (332)
T ss_pred eEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCCC-EeeeeecccCCCC-CCCcEEEEEEEcCCCcchhHHHhc
Confidence 46788888999999999998767789999999999998533 3579999999885 457899999984 7789999875
Q ss_pred HHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcc
Q 011270 165 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 244 (489)
Q Consensus 165 ~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~ 244 (489)
++ +|+.+.+.||+|.+..+....+++||||||+||||++||+++++... ...+++|+|++|+.+
T Consensus 89 l~----------~Gd~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~------~~~~v~l~y~~r~~~ 152 (332)
T PRK10684 89 VK----------RGDYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR------PQADVQVIFNVRTPQ 152 (332)
T ss_pred CC----------CCCEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC------CCCCEEEEEeCCChH
Confidence 55 58999999999998755445678999999999999999999987642 236899999999999
Q ss_pred hhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 245 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 245 ~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
++.+.+++.++..+ ..++++.++.+++. .....+|++++..+.+.........+ |.|||+.||.++.
T Consensus 153 ~~~~~~el~~l~~~----~~~~~~~~~~~~~~-~~~~~~grl~~~~l~~~~~~~~~~~v--yiCGP~~m~~~v~ 219 (332)
T PRK10684 153 DVIFADEWRQLKQR----YPQLNLTLVAENNA-TEGFIAGRLTRELLQQAVPDLASRTV--MTCGPAPYMDWVE 219 (332)
T ss_pred HhhhHHHHHHHHHH----CCCeEEEEEeccCC-CCCccccccCHHHHHHhcccccCCEE--EEECCHHHHHHHH
Confidence 99999988765432 24566666665432 23335688876554443322223344 4555556666553
No 29
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.94 E-value=5.2e-26 Score=231.77 Aligned_cols=205 Identities=15% Similarity=0.176 Sum_probs=155.7
Q ss_pred ceeEEEEEEeCCCeEEEEeecC--CCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEe--CCCccHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKH--AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLY 162 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~--~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~--~G~~T~~L~ 162 (489)
+.++++++.+++++.++++..+ ..+.|+||||+.|.+|.. ++|||||+|.|. +++.++|+||. .|..|++|+
T Consensus 104 ~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~-~~~~l~~~ik~~~~G~~s~~l~ 179 (339)
T PRK07609 104 PCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPH-SGGPLELHIRHMPGGVFTDHVF 179 (339)
T ss_pred EEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCC-CCCEEEEEEEecCCCccHHHHH
Confidence 4677888888999999999765 357899999999999863 579999999985 45789999987 488899998
Q ss_pred HHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC
Q 011270 163 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 242 (489)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~ 242 (489)
+.++ +|+.+.++||||.+..+....+++||||||+||||++||+++++..+ ..++++|+|++|+
T Consensus 180 ~~l~----------~G~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~------~~~~i~l~~g~r~ 243 (339)
T PRK07609 180 GALK----------ERDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG------IQRPVTLYWGARR 243 (339)
T ss_pred Hhcc----------CCCEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC------CCCcEEEEEecCC
Confidence 7665 58999999999998765456689999999999999999999998752 3367999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCcceEEEEEEeCC--CCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 243 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQE--EQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 243 ~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~--~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
.+++++.+++.++.. +..++++.+.++++ ++.|.+.+|++++....+. .......+|+| |++.|+.++.
T Consensus 244 ~~dl~~~e~l~~~~~----~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~~-~~~~~~~vy~C--Gp~~m~~~~~ 314 (339)
T PRK07609 244 PEDLYLSALAEQWAE----ELPNFRYVPVVSDALDDDAWTGRTGFVHQAVLEDF-PDLSGHQVYAC--GSPVMVYAAR 314 (339)
T ss_pred hHHhccHHHHHHHHH----hCCCeEEEEEecCCCCCCCccCccCcHHHHHHhhc-ccccCCEEEEE--CCHHHHHHHH
Confidence 999876666544332 23578888889975 3445567788876544332 11123445555 5556666553
No 30
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.94 E-value=9.9e-26 Score=215.97 Aligned_cols=164 Identities=17% Similarity=0.267 Sum_probs=135.2
Q ss_pred EEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHHHHHhc
Q 011270 91 LSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQMIHAE 168 (489)
Q Consensus 91 v~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~~~~~~ 168 (489)
++++.++++++++++..+..+.|+||||+.|++|.. ..|||||+|.|. +++.++|+||.. |.+|++|.+.++
T Consensus 2 ~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~-~~~~~~~~i~~~~~G~~s~~l~~~~~-- 75 (222)
T cd06194 2 VSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPD-GDNELEFHIRRKPNGAFSGWLGEEAR-- 75 (222)
T ss_pred ceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCC-CCCEEEEEEEeccCCccchHHHhccC--
Confidence 467788999999999887788999999999999863 569999999885 447899999984 778999988554
Q ss_pred ccCCcCcCcceeEEEeCCCCCCCCCC-CCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhh
Q 011270 169 LDSDADQMRCIPVAIEGPYGPATMDF-LRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEIC 247 (489)
Q Consensus 169 ~~~~~~~~~g~~v~v~GPyG~~~~~~-~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~ 247 (489)
+|+.+.|+||+|.+.... ...+++++||||+||||+++++++++... ..+++.++|++|+.+++.
T Consensus 76 --------~G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~------~~~~v~l~~~~r~~~~~~ 141 (222)
T cd06194 76 --------PGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG------HQGEIRLVHGARDPDDLY 141 (222)
T ss_pred --------CCCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC------CCccEEEEEecCChhhcc
Confidence 589999999999986543 45689999999999999999999998642 247899999999999999
Q ss_pred hHHhHhHHhhhccCCCcceEEEEEEeCCCCC
Q 011270 248 LLNSISPLLSNQQSKKWHLTLKVFVTQEEQS 278 (489)
Q Consensus 248 ~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~ 278 (489)
+.+++.++.. ...++++..+++++++.
T Consensus 142 ~~~el~~l~~----~~~~~~~~~~~~~~~~~ 168 (222)
T cd06194 142 LHPALLWLAR----EHPNFRYIPCVSEGSQG 168 (222)
T ss_pred CHHHHHHHHH----HCCCeEEEEEEccCCCC
Confidence 8888865432 23578888888876544
No 31
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.94 E-value=1.4e-25 Score=216.36 Aligned_cols=210 Identities=15% Similarity=0.192 Sum_probs=159.3
Q ss_pred eEEEEEEeCCCeEEEEeecCC---CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHH
Q 011270 89 CILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQ 163 (489)
Q Consensus 89 ~vv~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~ 163 (489)
++++.+.+++++..+++..++ ...++||||+.|.+|..+....|||||+|.+. +++.++|+||.. |..|+.|.+
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~-~~~~~~~~v~~~~~G~~s~~l~~ 80 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDD-DKGYFDLLIKIYPGGKMSQYLHS 80 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCC-cCCEEEEEEEECCCCcchhHHhc
Confidence 467888889999999997764 37899999999999976666889999999875 456899999984 888888865
Q ss_pred HHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCC-CeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC
Q 011270 164 MIHAELDSDADQMRCIPVAIEGPYGPATMDFLRY-DSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 242 (489)
Q Consensus 164 ~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~-~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~ 242 (489)
++ +|+.+.++||||.+..+.... +++||||||+||||+++++++++.+. ....+++++|++|+
T Consensus 81 -~~----------~G~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~-----~~~~~i~l~~~~r~ 144 (234)
T cd06183 81 -LK----------PGDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDP-----EDKTKISLLYANRT 144 (234)
T ss_pred -CC----------CCCEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCc-----CcCcEEEEEEecCC
Confidence 32 589999999999976543333 89999999999999999999998642 12478999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHH-HHH
Q 011270 243 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMA-ALV 318 (489)
Q Consensus 243 ~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~a-av~ 318 (489)
.+++.+.+++.+.... ...++++.+++++++..+.+..|++++..+.............++.||++.|+. ++.
T Consensus 145 ~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~~~~~~ 218 (234)
T cd06183 145 EEDILLREELDELAKK---HPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMIEGAVK 218 (234)
T ss_pred HHHhhhHHHHHHHHHh---CcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHH
Confidence 9999888887764322 125788888899877777777888887655544332012333445555556666 553
No 32
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.94 E-value=9.7e-26 Score=220.42 Aligned_cols=200 Identities=19% Similarity=0.293 Sum_probs=147.1
Q ss_pred EEEEEeCCCeEEEEeecCC----CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHHHHH
Q 011270 91 LSARVFPSKAIELILPKHA----GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIH 166 (489)
Q Consensus 91 v~~~~~~~~~~~l~~~~~~----~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~~~~ 166 (489)
.+++.+++++.++++..++ .+.|+||||+.|.+|..+ .|||||++.|. +++.++|+||..|.+|++|++ ++
T Consensus 2 ~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~-~~~~l~~~Ik~~G~~S~~L~~-l~ 76 (253)
T cd06221 2 VEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPT-RRGPLELTIRRVGRVTEALHE-LK 76 (253)
T ss_pred ceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCC-CCCeEEEEEEeCChhhHHHHc-CC
Confidence 4667788876666665433 378999999999998653 39999999985 467999999999999999875 33
Q ss_pred hcccCCcCcCcceeEEEeCCCCCCC-CCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcch
Q 011270 167 AELDSDADQMRCIPVAIEGPYGPAT-MDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 245 (489)
Q Consensus 167 ~~~~~~~~~~~g~~v~v~GPyG~~~-~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~ 245 (489)
+|+++.++||||.+. .+...++++||||||+||||+++|+++++... ...++++|+|++|+.++
T Consensus 77 ----------~G~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~-----~~~~~i~Li~~~r~~~~ 141 (253)
T cd06221 77 ----------PGDTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNR-----EDYGKVTLLYGARTPED 141 (253)
T ss_pred ----------CCCEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhcc-----ccCCcEEEEEecCChHH
Confidence 489999999999853 22225789999999999999999999998742 12378999999999999
Q ss_pred hhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 246 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 246 l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
+.+.+++.++.. . .++++.++++++++.+.+..|++.+...... ...+...+|+|| ++.|+.++.
T Consensus 142 ~~~~~~L~~l~~----~-~~~~~~~~~s~~~~~~~~~~g~v~~~l~~~~-~~~~~~~vyicG--p~~mv~~~~ 206 (253)
T cd06221 142 LLFKEELKEWAK----R-SDVEVILTVDRAEEGWTGNVGLVTDLLPELT-LDPDNTVAIVCG--PPIMMRFVA 206 (253)
T ss_pred cchHHHHHHHHh----c-CCeEEEEEeCCCCCCccCCccccchhHHhcC-CCcCCcEEEEEC--CHHHHHHHH
Confidence 998888876542 2 5688888888776655556677765322211 111234455555 455555543
No 33
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.94 E-value=1.7e-25 Score=213.77 Aligned_cols=197 Identities=23% Similarity=0.323 Sum_probs=149.0
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCC-CcceeeeEEeecCCCCCCeEEEEEEeC---CCccHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSIS-KFQWHSFSITSSSSVDDQTMSLIVKCD---GEWTSSLY 162 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s-~~~~hPFSIas~p~~~~~~l~l~Ik~~---G~~T~~L~ 162 (489)
+.++++++.+++++.++++..+..+.|+||||+.|.++..+ ..++|||||+|.| +++.++|+||.. |+.|+.|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~--~~~~l~~~vk~~~~~g~~s~~l~ 79 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLP--EDDVLEFVIKSYPDHDGVTEQLG 79 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCC--CCCeEEEEEEEcCCCCcHhHHHH
Confidence 45688999999999999999887889999999999987543 3468999999987 357999999983 77888886
Q ss_pred HHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC
Q 011270 163 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 242 (489)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~ 242 (489)
+. + +|+.+.+.||||.+.. .+++||||||+||||++++++++...+ ..++++|+|++|+
T Consensus 80 ~l-~----------~G~~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~------~~~~v~l~~~~r~ 138 (218)
T cd06196 80 RL-Q----------PGDTLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKG------KLEGNTLIFANKT 138 (218)
T ss_pred hC-C----------CCCEEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCC------CCceEEEEEecCC
Confidence 43 2 5899999999998742 267999999999999999999998742 2367999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 243 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 243 ~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
.+++.+.+++.++ .++++..++|++... .+.+|++++..+.+... .....+|+||+ +.|+.++.
T Consensus 139 ~~~~~~~~el~~l--------~~~~~~~~~s~~~~~-~~~~g~~~~~~l~~~~~-~~~~~vyiCGp--~~m~~~~~ 202 (218)
T cd06196 139 EKDIILKDELEKM--------LGLKFINVVTDEKDP-GYAHGRIDKAFLKQHVT-DFNQHFYVCGP--PPMEEAIN 202 (218)
T ss_pred HHHHhhHHHHHHh--------hcceEEEEEcCCCCC-CeeeeEECHHHHHHhcC-CCCCEEEEECC--HHHHHHHH
Confidence 9999988888653 234666777875432 33567777654444322 12234555554 45666553
No 34
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.94 E-value=3.9e-25 Score=220.19 Aligned_cols=167 Identities=22% Similarity=0.356 Sum_probs=131.6
Q ss_pred ceeEEEEEEeCCCe--EEEEeecC---CCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHH
Q 011270 87 ETCILSARVFPSKA--IELILPKH---AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSL 161 (489)
Q Consensus 87 ~~~vv~~~~~~~~~--~~l~~~~~---~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L 161 (489)
..++++++.+++++ +.|.+..+ +.+.|+||||+.|++|..+ .|||||+|.|. +++.++|+||..|.+|++|
T Consensus 7 ~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~-~~~~l~l~Ik~~G~~S~~L 82 (289)
T PRK08345 7 DAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPT-RKGFFELCIRRAGRVTTVI 82 (289)
T ss_pred eEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCC-CCCEEEEEEEeCChHHHHH
Confidence 46788889898874 45554443 2467999999999998653 48999999875 5678999999999999988
Q ss_pred HHHHHhcccCCcCcCcceeEEEeCCCCCC-CCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEe
Q 011270 162 YQMIHAELDSDADQMRCIPVAIEGPYGPA-TMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVI 240 (489)
Q Consensus 162 ~~~~~~~~~~~~~~~~g~~v~v~GPyG~~-~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~ 240 (489)
.+ ++ +|+.+.|+||||.+ ..+....++++|||||+||||++||+++++... ...++++|+|++
T Consensus 83 ~~-l~----------~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~-----~~~~~v~l~~~~ 146 (289)
T PRK08345 83 HR-LK----------EGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNR-----WKYGNITLIYGA 146 (289)
T ss_pred Hh-CC----------CCCEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcC-----CCCCcEEEEEec
Confidence 64 33 58999999999984 332223468999999999999999999988642 123689999999
Q ss_pred CCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCC
Q 011270 241 KSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQ 277 (489)
Q Consensus 241 r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~ 277 (489)
|+.+|+.+.+++.++.. +..+++++.+++++++
T Consensus 147 r~~~d~~~~deL~~l~~----~~~~~~~~~~~s~~~~ 179 (289)
T PRK08345 147 KYYEDLLFYDELIKDLA----EAENVKIIQSVTRDPE 179 (289)
T ss_pred CCHHHhhHHHHHHHHHh----cCCCEEEEEEecCCCC
Confidence 99999999998876543 3367888889998653
No 35
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.94 E-value=4.4e-25 Score=221.98 Aligned_cols=217 Identities=12% Similarity=0.092 Sum_probs=159.6
Q ss_pred ceeEEEEEEeCCCeEEEEeecCC--CCcccCCeEEEEecCCC---CCcceeeeEEeecCCCCCCeEEEEEEe--CCCccH
Q 011270 87 ETCILSARVFPSKAIELILPKHA--GLKFTPTSVIFMKIPSI---SKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTS 159 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~--~~~~~pGQ~v~l~~p~~---s~~~~hPFSIas~p~~~~~~l~l~Ik~--~G~~T~ 159 (489)
..++.+++.+++++.++++..+. .+.|+||||+.+.++.. ....+|+||++|.|. +++.++|+||. .|..|.
T Consensus 54 ~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~-~~~~le~~IK~~~~G~~S~ 132 (325)
T PTZ00274 54 PYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANH-TKGYFDIIVKRKKDGLMTN 132 (325)
T ss_pred EEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCC-CCCeEEEEEEEcCCCcccH
Confidence 46788899999999999996543 68999999999877521 123679999999985 46799999998 677899
Q ss_pred HHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEE
Q 011270 160 SLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYV 239 (489)
Q Consensus 160 ~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~ 239 (489)
+|++ ++ +|+.+.+.||+|.+..+....+++|||||||||||++||+++++.+..........+++|+|+
T Consensus 133 ~L~~-lk----------~Gd~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg 201 (325)
T PTZ00274 133 HLFG-MH----------VGDKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFC 201 (325)
T ss_pred HHhc-CC----------CCCEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEE
Confidence 9985 44 599999999988764443445799999999999999999999886521111112358999999
Q ss_pred eCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCC--CCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHH
Q 011270 240 IKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE--QSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 240 ~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~--~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav 317 (489)
+|+.+++.+.+++.++..+. ..++++.+.++++. +.|.+..|++++..+.+.....+.....++.|||+.||.++
T Consensus 202 ~R~~~di~~~~eL~~La~~~---~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~~~~~~~vylCGPp~Mm~av 278 (325)
T PTZ00274 202 NRTERHILLKGLFDDLARRY---SNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAPEEKKKIIMLCGPDQLLNHV 278 (325)
T ss_pred cCCHHHhhHHHHHHHHHHhC---CCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCCccCCcEEEEeCCHHHHHHh
Confidence 99999999988886654321 13688888888653 44667889998776554433222122345666666777766
Q ss_pred H
Q 011270 318 V 318 (489)
Q Consensus 318 ~ 318 (489)
.
T Consensus 279 ~ 279 (325)
T PTZ00274 279 A 279 (325)
T ss_pred c
Confidence 4
No 36
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.93 E-value=5.6e-25 Score=225.33 Aligned_cols=211 Identities=16% Similarity=0.176 Sum_probs=156.3
Q ss_pred ceeEEEEEEeCCCeEEEEeecCC----CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHH
Q 011270 87 ETCILSARVFPSKAIELILPKHA----GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSS 160 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~----~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~ 160 (489)
..++.+++.+++++.++++..+. .+.|+||||+.|.+|..+...+|||||+|.| +++.++|+||.. |..|.+
T Consensus 3 ~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p--~~~~l~i~vk~~~~G~~S~~ 80 (352)
T TIGR02160 3 RLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAP--APGEIRVAVKKIPGGLFSTW 80 (352)
T ss_pred EeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCC--CCCcEEEEEEEeCCCcchHH
Confidence 45678888999999999997653 3589999999999975454568999999987 457899999984 667899
Q ss_pred HHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCC--CCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEE
Q 011270 161 LYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFL--RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIY 238 (489)
Q Consensus 161 L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~--~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw 238 (489)
|++.++ +|+.+.|.||+|.+..+.. ..+++||||||+||||++||+++++..+ ...+++|+|
T Consensus 81 l~~~l~----------~Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~------~~~~v~l~~ 144 (352)
T TIGR02160 81 ANDEIR----------PGDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE------PRSTFTLVY 144 (352)
T ss_pred HHhcCC----------CCCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC------CCceEEEEE
Confidence 886655 6999999999999765432 3478999999999999999999998642 236899999
Q ss_pred EeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcC--CCCceEEecCCcHHHHHH
Q 011270 239 VIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFG--TQSNYAVNGLESLIWMAA 316 (489)
Q Consensus 239 ~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~--~~~~~~v~g~g~~~~~aa 316 (489)
++|+.+++.+.+++..+... ...+++++.++++++..+.+..|+++...+.+.+... ......+|.||++.||.+
T Consensus 145 ~~r~~~d~~~~~el~~l~~~---~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~~ 221 (352)
T TIGR02160 145 GNRRTASVMFAEELADLKDK---HPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQAMVDD 221 (352)
T ss_pred EeCCHHHHHHHHHHHHHHHh---CcCcEEEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCHHHHHH
Confidence 99999999999988765422 1235888888888766555566776644433333211 112223444455566666
Q ss_pred HH
Q 011270 317 LV 318 (489)
Q Consensus 317 v~ 318 (489)
+.
T Consensus 222 v~ 223 (352)
T TIGR02160 222 AE 223 (352)
T ss_pred HH
Confidence 54
No 37
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.93 E-value=8e-25 Score=213.29 Aligned_cols=208 Identities=14% Similarity=0.145 Sum_probs=149.7
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEe--CCCccHHHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLYQM 164 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~--~G~~T~~L~~~ 164 (489)
..+|++++.+++++.++++..+. ..|+||||+.|.++..+...+|||||+|.|. ++.++++||. .|..|+.|.+
T Consensus 6 ~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~~~G~~S~~L~~- 81 (248)
T PRK10926 6 TGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTVPEGKLSPRLAA- 81 (248)
T ss_pred EEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEeCCCCcChHHHh-
Confidence 45678888999999999997653 3799999999998644444679999999973 4589999988 4999999974
Q ss_pred HHhcccCCcCcCcceeEEEeCCCCC-CCCCCC-CCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC
Q 011270 165 IHAELDSDADQMRCIPVAIEGPYGP-ATMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 242 (489)
Q Consensus 165 ~~~~~~~~~~~~~g~~v~v~GPyG~-~~~~~~-~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~ 242 (489)
++ +|+.+.+.||+|+ +..+.. ..++++||||||||||++||++++...+ ..++++|+|++|+
T Consensus 82 l~----------~Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~------~~~~v~l~~g~r~ 145 (248)
T PRK10926 82 LK----------PGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE------RFKNLVLVHAARY 145 (248)
T ss_pred CC----------CCCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC------CCCcEEEEEeCCc
Confidence 44 5999999999854 433322 3478999999999999999999986532 2368999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhh----hHhhhcC-CCCceEEecCCcHHHHHHH
Q 011270 243 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSL----VRAVRFG-TQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 243 ~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~----~~~~~~~-~~~~~~v~g~g~~~~~aav 317 (489)
.+++.+.+++.++..+ ...++++...+++++. ..+.+|++++... ...+... ......++.|||+.|+.++
T Consensus 146 ~~d~~~~~el~~l~~~---~~~~~~v~~~~s~~~~-~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~ 221 (248)
T PRK10926 146 AADLSYLPLMQELEQR---YEGKLRIQTVVSRETA-PGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQMVRDT 221 (248)
T ss_pred HHHHHHHHHHHHHHHh---CcCCEEEEEEECCCCC-CCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHHHHHH
Confidence 9999999888764322 1246888888988553 3345677764321 1112111 1223445555555677666
Q ss_pred H
Q 011270 318 V 318 (489)
Q Consensus 318 ~ 318 (489)
.
T Consensus 222 ~ 222 (248)
T PRK10926 222 Q 222 (248)
T ss_pred H
Confidence 4
No 38
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.93 E-value=1.4e-24 Score=217.96 Aligned_cols=214 Identities=16% Similarity=0.199 Sum_probs=154.9
Q ss_pred ceeEEEEEEeC-----CCeEEEEeecCCCCcccCCeEEEEecCCCC------CcceeeeEEeecCCCC---CCeEEEEEE
Q 011270 87 ETCILSARVFP-----SKAIELILPKHAGLKFTPTSVIFMKIPSIS------KFQWHSFSITSSSSVD---DQTMSLIVK 152 (489)
Q Consensus 87 ~~~vv~~~~~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s------~~~~hPFSIas~p~~~---~~~l~l~Ik 152 (489)
..+|++++.++ +++.+|++..++++.|+||||+.|.+|... +..+|+|||+|+|..+ +..++|+||
T Consensus 26 ~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr 105 (307)
T PLN03116 26 TATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVR 105 (307)
T ss_pred EEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEE
Confidence 45688888887 899999999888899999999999877431 1247999999998422 237999998
Q ss_pred e---------------CCCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCC--CCCCeEEEEEeCCChhhHHHH
Q 011270 153 C---------------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDF--LRYDSLLLVAGGIGITPFLSI 215 (489)
Q Consensus 153 ~---------------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~--~~~~~vvlIAGGiGITP~lsi 215 (489)
. .|..|..|++ ++ +|+.+.|.||+|.+.... ...+++||||||+||||++||
T Consensus 106 ~~~~~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sm 174 (307)
T PLN03116 106 RAVYYDPETGKEDPAKKGVCSNFLCD-AK----------PGDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGF 174 (307)
T ss_pred EEEEecCCcCCCCCccCcchhhhHhh-CC----------CCCEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHH
Confidence 5 4778888887 54 599999999999976422 345789999999999999999
Q ss_pred HHHHHHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhh
Q 011270 216 LQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAV 295 (489)
Q Consensus 216 l~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~ 295 (489)
+++++..... ......++.|+|++|+.+++.+.+++.++.... ..++++...+++++..+.+.+|++++.......
T Consensus 175 l~~~l~~~~~-~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~---~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~ 250 (307)
T PLN03116 175 LRRMFMEDVP-AFKFGGLAWLFLGVANSDSLLYDDEFERYLKDY---PDNFRYDYALSREQKNKKGGKMYVQDKIEEYSD 250 (307)
T ss_pred HHHHHhhccc-cccCCCcEEEEEecCCcccchHHHHHHHHHHhC---CCcEEEEEEEccCCcccCCCccchhhHHHHHHH
Confidence 9998764211 011235799999999999999988887654321 136889999998877665566777654322211
Q ss_pred ---h-cCCCCceEEecCCcHHHHHHH
Q 011270 296 ---R-FGTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 296 ---~-~~~~~~~~v~g~g~~~~~aav 317 (489)
. ..+...+|+||+ +.|+.++
T Consensus 251 ~~~~~~~~~~~vYiCGp--~~mv~~v 274 (307)
T PLN03116 251 EIFKLLDNGAHIYFCGL--KGMMPGI 274 (307)
T ss_pred HHHhhhcCCcEEEEeCC--HHHHHHH
Confidence 1 112344556554 5566554
No 39
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.93 E-value=1.2e-24 Score=206.80 Aligned_cols=140 Identities=21% Similarity=0.318 Sum_probs=115.4
Q ss_pred EEEEeCCCeEEEEeecCCC---CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCC---CccHHHHHHH
Q 011270 92 SARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDG---EWTSSLYQMI 165 (489)
Q Consensus 92 ~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G---~~T~~L~~~~ 165 (489)
+++.+++++.++++..+.. ..|+||||+.|++|. ...|||||++.|. +++.++|+||..+ +.|..|.+.+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~-~~~~l~~~v~~~~~g~~~s~~l~~~~ 77 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPA-DRDRYRIAVLREPASRGGSRYMHELL 77 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCC-CCCEEEEEEEeccCCCchHHHHHhcC
Confidence 4567889999999988765 389999999999986 3679999999875 4588999999843 3688887654
Q ss_pred HhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcch
Q 011270 166 HAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 245 (489)
Q Consensus 166 ~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~ 245 (489)
+ +|+++.+.||+|.+..+ ...++++|||||+||||++++++++... .++++++|++|+.++
T Consensus 78 ~----------~Gd~v~i~gP~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~~--------~~~v~l~~~~r~~~~ 138 (211)
T cd06185 78 R----------VGDELEVSAPRNLFPLD-EAARRHLLIAGGIGITPILSMARALAAR--------GADFELHYAGRSRED 138 (211)
T ss_pred C----------CCCEEEEcCCccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHhC--------CCCEEEEEEeCCCcc
Confidence 4 58999999999988653 2457999999999999999999998753 257999999999999
Q ss_pred hhhHHhHhH
Q 011270 246 ICLLNSISP 254 (489)
Q Consensus 246 l~~~~~l~~ 254 (489)
+.+.+++.+
T Consensus 139 ~~~~~~l~~ 147 (211)
T cd06185 139 AAFLDELAA 147 (211)
T ss_pred hhHHHHHhh
Confidence 988777654
No 40
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.93 E-value=1.3e-24 Score=212.20 Aligned_cols=201 Identities=22% Similarity=0.330 Sum_probs=155.0
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCCC--cccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAGL--KFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLY 162 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~~--~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~ 162 (489)
..++.+++..+++++++++..+.+. .|+||||+.|.++..+...+|.|||+|+|. +++.+.|.||+. |..|++|+
T Consensus 7 ~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~-~~~~~~isVk~~~~G~~S~~Lh 85 (266)
T COG1018 7 RVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPD-EDSLYRISVKREDGGGGSNWLH 85 (266)
T ss_pred EEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCC-CCceEEEEEEEeCCCcccHHHH
Confidence 4678899999999999999988876 499999999999987777899999999996 456899999983 89999999
Q ss_pred HHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC
Q 011270 163 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 242 (489)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~ 242 (489)
+.++ +|+.+.|.+|.|.+..+....++++|+||||||||++||++++...+ . .++.|++++|+
T Consensus 86 ~~lk----------~Gd~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~------~-~~v~l~h~~R~ 148 (266)
T COG1018 86 DHLK----------VGDTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG------P-ADVVLVHAART 148 (266)
T ss_pred hcCC----------CCCEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC------C-CCEEEEEecCC
Confidence 8776 69999999999999877656668999999999999999999998763 4 78999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHH
Q 011270 243 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 243 ~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav 317 (489)
.+++.|.++ ..++.+.. ....+..+.. +....|+++-..+.....+.. ...|+|||++ +|.++
T Consensus 149 ~~~~af~de-~~l~~~~~---~~~~~~~~~~-----~~~~~g~~~~~~l~~~~~~~~-r~~y~CGp~~--fm~av 211 (266)
T COG1018 149 PADLAFRDE-LELAAELP---NALLLGLYTE-----RGKLQGRIDVSRLLSAAPDGG-REVYLCGPGP--FMQAV 211 (266)
T ss_pred hhhcchhhH-HHHHhhCC---CCeeEEEEEe-----cCCccccccHHHHhccCCCCC-CEEEEECCHH--HHHHH
Confidence 999999997 44443221 2344554543 223345554333332222222 5667777665 44444
No 41
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.93 E-value=2.2e-24 Score=214.58 Aligned_cols=215 Identities=18% Similarity=0.232 Sum_probs=155.3
Q ss_pred ceeEEEEEEeC-----CCeEEEEeecCCCCcccCCeEEEEecCCCC-----CcceeeeEEeecCCC---CCCeEEEEEEe
Q 011270 87 ETCILSARVFP-----SKAIELILPKHAGLKFTPTSVIFMKIPSIS-----KFQWHSFSITSSSSV---DDQTMSLIVKC 153 (489)
Q Consensus 87 ~~~vv~~~~~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s-----~~~~hPFSIas~p~~---~~~~l~l~Ik~ 153 (489)
..+|++++.++ +++.++++..+..+.|+||||+.|.+|... ....|||||+|.|.. +++.++|+||.
T Consensus 10 ~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~ 89 (286)
T cd06208 10 IGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKR 89 (286)
T ss_pred EEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEE
Confidence 35678888887 689999998777889999999999877432 234799999998753 24689999998
Q ss_pred C------------CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCC-CCCCeEEEEEeCCChhhHHHHHHHHH
Q 011270 154 D------------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDF-LRYDSLLLVAGGIGITPFLSILQEIA 220 (489)
Q Consensus 154 ~------------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~-~~~~~vvlIAGGiGITP~lsil~~l~ 220 (489)
. |..|+.|.+ ++ +|+.|.|.||+|.+.... ...++++|||||+||||++|++++++
T Consensus 90 ~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~ 158 (286)
T cd06208 90 LVYTDPETDETKKGVCSNYLCD-LK----------PGDDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLF 158 (286)
T ss_pred EEEecCCCCceeccchHHHHhh-CC----------CCCEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHH
Confidence 5 778888887 33 589999999999875432 23468999999999999999999988
Q ss_pred HhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhh---h-
Q 011270 221 SAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAV---R- 296 (489)
Q Consensus 221 ~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~---~- 296 (489)
.... ......+++.|+|++|+.+++.+.+++.+...+ ...++++.+.+|+++..+.+.+|++++....... +
T Consensus 159 ~~~~-~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~---~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~ 234 (286)
T cd06208 159 REKH-ADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQ---YPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNL 234 (286)
T ss_pred Hhhh-cccCCCCCEEEEEEecCccchhHHHHHHHHHHh---CCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHH
Confidence 6410 011123679999999999999988888765432 1246888899998876665666777664432211 1
Q ss_pred cC-CCCceEEecCCcHHHHHHHH
Q 011270 297 FG-TQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 297 ~~-~~~~~~v~g~g~~~~~aav~ 318 (489)
.. +...+|+||+ +.|+.++.
T Consensus 235 l~~~~~~vYiCGp--~~m~~~v~ 255 (286)
T cd06208 235 LDKDNTHVYICGL--KGMEPGVD 255 (286)
T ss_pred HhcCCcEEEEeCC--chHHHHHH
Confidence 11 2234555554 45666654
No 42
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.93 E-value=1.7e-24 Score=212.79 Aligned_cols=199 Identities=16% Similarity=0.233 Sum_probs=147.3
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIH 166 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~~~~ 166 (489)
+.++++++.+++++.++++..+ ..|+||||+.|.+|..+ .|||||++.+ ++.++|+||..|..|+.|.+ ++
T Consensus 9 ~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~---~~~~~~~Ik~~G~~S~~L~~-l~ 79 (263)
T PRK08221 9 AYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG---DGYIDLTIRRVGKVTDEIFN-LK 79 (263)
T ss_pred cEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC---CCEEEEEEEeCCchhhHHHh-CC
Confidence 4678889999999999999764 58999999999998653 3999998863 56899999999999998875 33
Q ss_pred hcccCCcCcCcceeEEEeCCCCC-CCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcch
Q 011270 167 AELDSDADQMRCIPVAIEGPYGP-ATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 245 (489)
Q Consensus 167 ~~~~~~~~~~~g~~v~v~GPyG~-~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~ 245 (489)
+|+.+.|+||+|. +..+....+++||||||+||||++|++++++.+. ...++++|+|++|+.++
T Consensus 80 ----------~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~-----~~~~~v~L~~g~r~~~~ 144 (263)
T PRK08221 80 ----------EGDKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENP-----QEIKSLDLILGFKNPDD 144 (263)
T ss_pred ----------CCCEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCc-----ccCceEEEEEecCCHHH
Confidence 5899999999998 5444334679999999999999999999987642 12368999999999999
Q ss_pred hhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 246 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 246 l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
+.+.+++.++.. +.++.+.+++++..+.+..|++++...... ..+.....++.||++.|+.++.
T Consensus 145 l~~~~el~~~~~-------~~~~~~~~~~~~~~~~~~~G~v~~~l~~~~--~~~~~~~~vylCGp~~mv~~~~ 208 (263)
T PRK08221 145 ILFKEDLKRWRE-------KINLILTLDEGEEGYRGNVGLVTKYIPELT--LKDIDNMQVIVVGPPIMMKFTV 208 (263)
T ss_pred hhHHHHHHHHhh-------cCcEEEEecCCCCCCccCccccChhhHhcc--CCCcCCeEEEEECCHHHHHHHH
Confidence 999988876432 123445566655556667788875432211 1111233445555666666553
No 43
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.93 E-value=1.2e-24 Score=211.92 Aligned_cols=193 Identities=21% Similarity=0.299 Sum_probs=141.9
Q ss_pred EEEEEeCCCeEEEEeecCC-CCcccCCeEEEEecCC-CCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHHHHHhc
Q 011270 91 LSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPS-ISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAE 168 (489)
Q Consensus 91 v~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~-~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~~~~~~ 168 (489)
++++.+++++.++++..+. ...|+||||+.|.+|. .+++.+|||||+|.|. +++.++|+||..|.+|+.|.+ ++
T Consensus 2 ~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~-~~~~l~l~v~~~G~~s~~l~~-l~-- 77 (246)
T cd06218 2 LSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDP-EEGTITLLYKVVGKGTRLLSE-LK-- 77 (246)
T ss_pred cceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccC-CCCEEEEEEEEECcchHHHhc-CC--
Confidence 5677889999999998776 6789999999999986 4456889999999874 467899999999999988854 22
Q ss_pred ccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhh
Q 011270 169 LDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICL 248 (489)
Q Consensus 169 ~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~ 248 (489)
+|+++.|+||||.........++++|||||+||||++|+++++... .++++|+|++|+.+++.+
T Consensus 78 --------~Gd~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~--------~~~v~l~~~~r~~~d~~~ 141 (246)
T cd06218 78 --------AGDELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER--------GIKVTVLLGFRSADDLFL 141 (246)
T ss_pred --------CCCEEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc--------CCceEEEEEccchhhhhh
Confidence 5899999999997432223578999999999999999999998863 267999999999999999
Q ss_pred HHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 249 LNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 249 ~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
.+++.++. . ++. ++.++ .+.+.+|++++. +.+.........+|+| |++.|+.++.
T Consensus 142 ~~eL~~l~-------~--~~~--~~~~~-~~~~~~g~v~~~-l~~~~~~~~~~~vyiC--Gp~~mv~~~~ 196 (246)
T cd06218 142 VEEFEALG-------A--EVY--VATDD-GSAGTKGFVTDL-LKELLAEARPDVVYAC--GPEPMLKAVA 196 (246)
T ss_pred HHHHHhhC-------C--cEE--EEcCC-CCCCcceehHHH-HHHHhhccCCCEEEEE--CCHHHHHHHH
Confidence 88886531 1 222 23322 244456777653 3333222223444455 5556666553
No 44
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.93 E-value=3.2e-24 Score=223.46 Aligned_cols=206 Identities=14% Similarity=0.227 Sum_probs=154.3
Q ss_pred eeEEEEEEeCCCeEEEEeecCC---CCcccCCeEEEEecCCCC--CcceeeeEEeecCCCCCCeEEEEEEeC--CCccHH
Q 011270 88 TCILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSIS--KFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSS 160 (489)
Q Consensus 88 ~~vv~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~p~~s--~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~ 160 (489)
.++++++.+++++..+++..+. ...|+||||+.|.++..+ ..++|||||+|.| +++.++|+||.. |..|.+
T Consensus 157 ~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p--~~~~l~~~Vk~~~~G~~S~~ 234 (399)
T PRK13289 157 FRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAP--NGKYYRISVKREAGGKVSNY 234 (399)
T ss_pred EEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCC--CCCeEEEEEEECCCCeehHH
Confidence 4788889999999999997643 368999999999986432 3357999999987 356899999986 999999
Q ss_pred HHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEe
Q 011270 161 LYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVI 240 (489)
Q Consensus 161 L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~ 240 (489)
|++.++ +|+.+.|.||+|.+..+....+++|||||||||||++||+++++... ..++++|+|++
T Consensus 235 L~~~l~----------~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~------~~~~v~l~~~~ 298 (399)
T PRK13289 235 LHDHVN----------VGDVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ------PKRPVHFIHAA 298 (399)
T ss_pred HhhcCC----------CCCEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC------CCCCEEEEEEe
Confidence 987555 59999999999998765445689999999999999999999998642 34789999999
Q ss_pred CCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCC-c----chhhhcchhhhhHhhhcCCCCceEEecCCcHHHHH
Q 011270 241 KSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS-V----TVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMA 315 (489)
Q Consensus 241 r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~-~----~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~a 315 (489)
|+.+++.+.+++.++.. ...++++..+++++...+ . ...|++++..+.+... .....+|+| ||+.|+.
T Consensus 299 r~~~~~~~~~eL~~l~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~l~~~~~-~~~~~vyiC--Gp~~m~~ 371 (399)
T PRK13289 299 RNGGVHAFRDEVEALAA----RHPNLKAHTWYREPTEQDRAGEDFDSEGLMDLEWLEAWLP-DPDADFYFC--GPVPFMQ 371 (399)
T ss_pred CChhhchHHHHHHHHHH----hCCCcEEEEEECCCccccccCCcccccCcccHHHHHhhCC-CCCCEEEEE--CCHHHHH
Confidence 99999998888865532 234788888888754321 1 1347777544433322 123445555 5556666
Q ss_pred HHH
Q 011270 316 ALV 318 (489)
Q Consensus 316 av~ 318 (489)
++.
T Consensus 372 ~v~ 374 (399)
T PRK13289 372 FVA 374 (399)
T ss_pred HHH
Confidence 553
No 45
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.92 E-value=3.8e-24 Score=217.66 Aligned_cols=212 Identities=18% Similarity=0.226 Sum_probs=153.3
Q ss_pred eEEEEEEeC-----CCeEEEEeecCCCCcccCCeEEEEecCCCC----CcceeeeEEeecCCC---CCCeEEEEEEe---
Q 011270 89 CILSARVFP-----SKAIELILPKHAGLKFTPTSVIFMKIPSIS----KFQWHSFSITSSSSV---DDQTMSLIVKC--- 153 (489)
Q Consensus 89 ~vv~~~~~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s----~~~~hPFSIas~p~~---~~~~l~l~Ik~--- 153 (489)
++++.+.+. +++.+|++..+..+.|+||||+.|.+|... +...|||||+|+|.. +++.++|+||.
T Consensus 94 ~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y 173 (367)
T PLN03115 94 RCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY 173 (367)
T ss_pred EEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEEEe
Confidence 445555554 388999997777889999999999987432 335799999999742 25689999986
Q ss_pred --------CCCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCC-CCCCCeEEEEEeCCChhhHHHHHHHHHHhhc
Q 011270 154 --------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMD-FLRYDSLLLVAGGIGITPFLSILQEIASAQS 224 (489)
Q Consensus 154 --------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~-~~~~~~vvlIAGGiGITP~lsil~~l~~~~~ 224 (489)
.|..|..|.+ ++ +|+.|.|.||+|.+... .....++||||||+|||||+|++++++....
T Consensus 174 ~~~~g~~~~G~~S~~L~~-Lk----------~Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~ 242 (367)
T PLN03115 174 TNDQGEIVKGVCSNFLCD-LK----------PGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKH 242 (367)
T ss_pred ecCCCccCCeehHhhHhh-CC----------CcCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhcc
Confidence 3778888877 44 59999999999987532 2344689999999999999999998765321
Q ss_pred ccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHh--h-hcC--C
Q 011270 225 NRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRA--V-RFG--T 299 (489)
Q Consensus 225 ~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~--~-~~~--~ 299 (489)
.......++.|+|++|+.+++.+.+++.++..+ ...+++++..+||+++.|.+.+|++++...... + ... +
T Consensus 243 -~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~---~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~ 318 (367)
T PLN03115 243 -DDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEK---APENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKD 318 (367)
T ss_pred -ccccCCCcEEEEEccCCHHHhhHHHHHHHHHHh---CCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccC
Confidence 111123679999999999999999998765432 124789999999998888777788877543222 1 112 2
Q ss_pred CCceEEecCCcHHHHHHH
Q 011270 300 QSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 300 ~~~~~v~g~g~~~~~aav 317 (489)
...+|+||+ +.|+..+
T Consensus 319 ~~~vYiCGp--~~M~~~V 334 (367)
T PLN03115 319 NTYVYMCGL--KGMEKGI 334 (367)
T ss_pred CeEEEEeCC--HHHHHHH
Confidence 344566654 5566555
No 46
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.92 E-value=3.6e-24 Score=208.15 Aligned_cols=192 Identities=20% Similarity=0.299 Sum_probs=141.2
Q ss_pred EEEEEeCCCeEEEEeecCC-CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHHHHHhcc
Q 011270 91 LSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAEL 169 (489)
Q Consensus 91 v~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~~~~~~~ 169 (489)
++++.+++++.++++..+. ...|+||||++|.+|..+...+|||||+|.|. ++++++|+||..|..|+.|.+ ++
T Consensus 2 ~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~-~~~~l~l~i~~~G~~t~~l~~-~~--- 76 (243)
T cd06192 2 VKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDP-EEGTISLLVEIRGPKTKLIAE-LK--- 76 (243)
T ss_pred ceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCC-CCCEEEEEEEEcCchHHHHHh-CC---
Confidence 5677889999999998654 46899999999999754456889999999875 568999999999999998864 33
Q ss_pred cCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhhH
Q 011270 170 DSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLL 249 (489)
Q Consensus 170 ~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~ 249 (489)
+|+.+.|.||||.+.......++++|||||+||||++++++++..+ .++++++|++|+.+++.+.
T Consensus 77 -------~G~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~--------~~~v~l~~~~r~~~d~~~~ 141 (243)
T cd06192 77 -------PGEKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAAN--------GNKVTVLAGAKKAKEEFLD 141 (243)
T ss_pred -------CCCEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHC--------CCeEEEEEecCcHHHHHHH
Confidence 5899999999998754433478999999999999999999998864 2689999999999999888
Q ss_pred HhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 250 NSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 250 ~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
+++.... ...++++++ .+.+..|.+.+.. ...... ....++.||++.|+.++.
T Consensus 142 ~el~~~~----------~~~~~~~~~--~~~~~~g~v~~~~--~~~~~~--~~~~v~icGp~~mv~~~~ 194 (243)
T cd06192 142 EYFELPA----------DVEIWTTDD--GELGLEGKVTDSD--KPIPLE--DVDRIIVAGSDIMMKAVV 194 (243)
T ss_pred HHHHhhc----------CeEEEEecC--CCCccceeechhh--hhhhcc--cCCEEEEECCHHHHHHHH
Confidence 8875420 123444532 3444556665431 111111 223455555566666553
No 47
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.92 E-value=3.9e-24 Score=208.81 Aligned_cols=192 Identities=17% Similarity=0.299 Sum_probs=144.9
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIH 166 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~~~~ 166 (489)
...+++++.+++++.++++..++.+.|+||||+.|.+|..+...+|||||++.| ++.++|+||..|.+|++|.+ ++
T Consensus 6 ~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~~G~~t~~l~~-l~ 81 (250)
T PRK00054 6 NMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRKVGEGTKKLSK-LK 81 (250)
T ss_pred EEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEEcChHHHHHhc-CC
Confidence 467889999999999999987767889999999999987766679999999986 57999999999999998864 22
Q ss_pred hcccCCcCcCcceeEEEeCCCCC-CCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcch
Q 011270 167 AELDSDADQMRCIPVAIEGPYGP-ATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 245 (489)
Q Consensus 167 ~~~~~~~~~~~g~~v~v~GPyG~-~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~ 245 (489)
+|+++.|.||||. +..+ ...+++++||||+||||++++++++..++ .+++++|++|+.++
T Consensus 82 ----------~G~~v~i~gP~G~~f~l~-~~~~~~vlIagG~GiaP~~s~l~~~~~~~--------~~v~l~~~~r~~~d 142 (250)
T PRK00054 82 ----------EGDELDIRGPLGNGFDLE-EIGGKVLLVGGGIGVAPLYELAKELKKKG--------VEVTTVLGARTKDE 142 (250)
T ss_pred ----------CCCEEEEEcccCCCCCCC-CCCCeEEEEeccccHHHHHHHHHHHHHcC--------CcEEEEEEcCCHHH
Confidence 5899999999997 4332 36689999999999999999999998642 57999999999999
Q ss_pred hhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHHH
Q 011270 246 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVG 319 (489)
Q Consensus 246 l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~~ 319 (489)
+.+.+++.+ + . + + ++.+ + +.+.+.+|++++...... .+.. .++.||++.|+.++..
T Consensus 143 ~~~~~el~~-~-----~--~--~-~~~~-~-~~~~~~~g~v~~~l~~~~---~~~~--~vyvCGp~~m~~~v~~ 198 (250)
T PRK00054 143 VIFEEEFAK-V-----G--D--V-YVTT-D-DGSYGFKGFVTDVLDELD---SEYD--AIYSCGPEIMMKKVVE 198 (250)
T ss_pred hhhHHHHHh-c-----C--C--E-EEEe-c-CCCCCcccchhHhHhhhc---cCCC--EEEEeCCHHHHHHHHH
Confidence 998888764 1 1 1 1 1223 2 234445667765432211 1223 4555556667666643
No 48
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.92 E-value=3.8e-24 Score=223.13 Aligned_cols=209 Identities=14% Similarity=0.219 Sum_probs=155.0
Q ss_pred eeEEEEEEeCCCeEEEEeecC--CCCcccCCeEEEEecCCC-----------------------------CCcceeeeEE
Q 011270 88 TCILSARVFPSKAIELILPKH--AGLKFTPTSVIFMKIPSI-----------------------------SKFQWHSFSI 136 (489)
Q Consensus 88 ~~vv~~~~~~~~~~~l~~~~~--~~~~~~pGQ~v~l~~p~~-----------------------------s~~~~hPFSI 136 (489)
.++++.+.+++++.++++..+ .++.|+||||+.|.+|.. +....|||||
T Consensus 136 ~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySi 215 (409)
T PRK05464 136 CTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAYSM 215 (409)
T ss_pred EEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeeecc
Confidence 456666777888888888765 457899999999999742 2245799999
Q ss_pred eecCCCCCCeEEEEEEe-----------CCCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEe
Q 011270 137 TSSSSVDDQTMSLIVKC-----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAG 205 (489)
Q Consensus 137 as~p~~~~~~l~l~Ik~-----------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAG 205 (489)
+|.|. +++.++|+||. .|..|.+|++ ++ +|+.+.|.||+|.+... ...+++|||||
T Consensus 216 as~p~-~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~gP~G~f~~~-~~~~~ivlIAg 282 (409)
T PRK05464 216 ANYPE-EKGIIMLNVRIATPPPGNPDVPPGIMSSYIFS-LK----------PGDKVTISGPFGEFFAK-DTDAEMVFIGG 282 (409)
T ss_pred CCCCC-CCCeEEEEEEEeecCCCcCCCCCCchhhHHHh-CC----------CCCEEEEEccccCcEec-CCCceEEEEEe
Confidence 99985 56789999985 4888999985 33 58999999999998654 45689999999
Q ss_pred CCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCC--CCCcchh
Q 011270 206 GIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE--QSSVTVR 283 (489)
Q Consensus 206 GiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~--~~~~~~~ 283 (489)
|+||||++||+++++... ...++++|+|++|+.+++.+.+++.+... ...++++.+.+++++ +.+.+.+
T Consensus 283 GtGIaP~~sml~~~l~~~-----~~~~~v~L~~g~r~~~d~~~~~el~~l~~----~~~~~~~~~~~s~~~~~~~~~g~~ 353 (409)
T PRK05464 283 GAGMAPMRSHIFDQLKRL-----KSKRKISFWYGARSLREMFYVEDFDQLAA----ENPNFKWHVALSDPLPEDNWTGYT 353 (409)
T ss_pred ccChhHHHHHHHHHHhCC-----CCCceEEEEEecCCHHHhhHHHHHHHHHH----hCCCeEEEEEEcCCCCCCCCCCcc
Confidence 999999999999887642 12368999999999999999888865432 335788888888654 3455677
Q ss_pred hhcchhhhhHhhhc-CCCCceEEecCCcHHHHHHHH
Q 011270 284 EVLNDLSLVRAVRF-GTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 284 g~v~~~~~~~~~~~-~~~~~~~v~g~g~~~~~aav~ 318 (489)
|++++....+.+.. .......+|.|||+.|+.++.
T Consensus 354 G~v~~~l~~~~l~~~~~~~~~~vyiCGP~~m~~av~ 389 (409)
T PRK05464 354 GFIHNVLYENYLKDHEAPEDCEYYMCGPPMMNAAVI 389 (409)
T ss_pred ceeCHHHHHhhhhhcCCCCCeEEEEECCHHHHHHHH
Confidence 88886554443321 112233455556667777664
No 49
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.92 E-value=5.4e-24 Score=211.16 Aligned_cols=195 Identities=17% Similarity=0.310 Sum_probs=145.3
Q ss_pred eeEEEEEEeCCCeEEEEeecCC-CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHHHHH
Q 011270 88 TCILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIH 166 (489)
Q Consensus 88 ~~vv~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~~~~ 166 (489)
.++++.+.+++++.++++..+. ...++||||+.|+++..+ ++|||||++.+. +++.++|+||..|..|+.|.+ ++
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~~--~~rpySias~~~-~~~~i~l~vk~~G~~T~~L~~-l~ 77 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEKG--ERIPLTIADYDR-EKGTITIVFQAVGKSTRKLAE-LK 77 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCCC--CceeeEeeEEcC-CCCEEEEEEEeCCcHHHHHhc-CC
Confidence 3578889999999999997654 357999999999997543 579999999864 567899999999999999874 33
Q ss_pred hcccCCcCcCcceeE-EEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcch
Q 011270 167 AELDSDADQMRCIPV-AIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 245 (489)
Q Consensus 167 ~~~~~~~~~~~g~~v-~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~ 245 (489)
+|+.+ .|.||+|.+.. ....++++|||||+||||++++++++..++ .+++++|++|+.++
T Consensus 78 ----------~Gd~v~~i~GP~G~~~~-~~~~~~~llIaGGiGiaPl~~l~~~l~~~~--------~~v~l~~g~r~~~d 138 (281)
T PRK06222 78 ----------EGDSILDVVGPLGKPSE-IEKFGTVVCVGGGVGIAPVYPIAKALKEAG--------NKVITIIGARNKDL 138 (281)
T ss_pred ----------CCCEEeeEEcCCCCCcc-cCCCCeEEEEeCcCcHHHHHHHHHHHHHCC--------CeEEEEEecCCHHH
Confidence 58999 69999998754 334679999999999999999999987642 57999999999999
Q ss_pred hhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHHH
Q 011270 246 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVG 319 (489)
Q Consensus 246 l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~~ 319 (489)
+.+.+++.+.. . ++ +++.++ .+.+.+|++++.. .+.....+ ....++.|||+.||.++..
T Consensus 139 ~~~~~el~~~~-----~----~~--~v~~~d-~~~g~~G~v~~~l-~~~~~~~~-~~~~vy~CGP~~M~~~v~~ 198 (281)
T PRK06222 139 LILEDEMKAVS-----D----EL--YVTTDD-GSYGRKGFVTDVL-KELLESGK-KVDRVVAIGPVIMMKFVAE 198 (281)
T ss_pred hhcHHHHHhhC-----C----eE--EEEcCC-CCcCcccchHHHH-HHHhhcCC-CCcEEEEECCHHHHHHHHH
Confidence 99988885431 1 11 233333 3556778887632 32222211 1234666677777776643
No 50
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.92 E-value=7.2e-24 Score=206.63 Aligned_cols=192 Identities=18% Similarity=0.277 Sum_probs=140.0
Q ss_pred eEEEEEEeCCCeEEEEeecCC-CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHHHHHh
Q 011270 89 CILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHA 167 (489)
Q Consensus 89 ~vv~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~~~~~ 167 (489)
++++++.+++++..+++..+. ...|+||||+.|.++.. .++|||||+|.|. +++.++|+||..|..|..|.+ ++
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~--~~~~pySi~s~~~-~~~~~~~~vk~~G~~t~~l~~-l~- 76 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEK--GERIPLTIADWDP-EKGTITIVVQVVGKSTRELAT-LE- 76 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCC--CCccceEeEEEcC-CCCEEEEEEEeCCchHHHHHh-cC-
Confidence 467888899999999998754 35899999999998643 3679999999874 567999999999999988754 33
Q ss_pred cccCCcCcCcceeE-EEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchh
Q 011270 168 ELDSDADQMRCIPV-AIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI 246 (489)
Q Consensus 168 ~~~~~~~~~~g~~v-~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l 246 (489)
+|+++ .++||||.+.. ..+.++++|||||+||||++++++++...+ ++++|+|++|+.+++
T Consensus 77 ---------~G~~v~~i~gP~G~~~~-~~~~~~~lliagG~GiaP~~~~l~~~~~~~--------~~v~l~~~~r~~~~~ 138 (248)
T cd06219 77 ---------EGDKIHDVVGPLGKPSE-IENYGTVVFVGGGVGIAPIYPIAKALKEAG--------NRVITIIGARTKDLV 138 (248)
T ss_pred ---------CCCEeeeeecCCCCCee-cCCCCeEEEEeCcccHHHHHHHHHHHHHcC--------CeEEEEEEcCCHHHh
Confidence 48888 79999999754 345689999999999999999999987642 579999999999999
Q ss_pred hhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhh-cCCCCceEEecCCcHHHHHHHH
Q 011270 247 CLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVR-FGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 247 ~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~-~~~~~~~~v~g~g~~~~~aav~ 318 (489)
.+.+++.++. . ++ ++.+++ .+.+..|++.+. +.+... ..+... ++.|||+.|+.++.
T Consensus 139 ~~~~el~~l~-----~----~~-~~~~~~--~~~~~~g~v~~~-l~~~~~~~~~~~~--vyiCGP~~m~~~~~ 196 (248)
T cd06219 139 ILEDEFRAVS-----D----EL-IITTDD--GSYGEKGFVTDP-LKELIESGEKVDL--VIAIGPPIMMKAVS 196 (248)
T ss_pred hhHHHHHhhc-----C----eE-EEEeCC--CCCCccccchHH-HHHHHhccCCccE--EEEECCHHHHHHHH
Confidence 9988886542 1 11 223432 244456776653 223322 222233 45555555666553
No 51
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.92 E-value=8.7e-24 Score=211.37 Aligned_cols=207 Identities=16% Similarity=0.220 Sum_probs=153.1
Q ss_pred ceeEEEEEEeCCCeEEEEeecCC---CCcccCCeEEEEecCCCCC----cceeeeEEeecCCCCCCeEEEEEEeC-----
Q 011270 87 ETCILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSISK----FQWHSFSITSSSSVDDQTMSLIVKCD----- 154 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~p~~s~----~~~hPFSIas~p~~~~~~l~l~Ik~~----- 154 (489)
..++++.+.+++++..+++..+. .+.|+||||+.|.++..+. ...||||++|.|. +++.++|+||..
T Consensus 35 ~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~~ 113 (300)
T PTZ00319 35 HFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-EKGYVDFLIKVYFKGVH 113 (300)
T ss_pred EEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcc-cCCEEEEEEEEeccCCC
Confidence 36788889999999988886532 3689999999999975321 4679999999875 677899999975
Q ss_pred ------CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCC---------------CCCCeEEEEEeCCChhhHH
Q 011270 155 ------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDF---------------LRYDSLLLVAGGIGITPFL 213 (489)
Q Consensus 155 ------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~---------------~~~~~vvlIAGGiGITP~l 213 (489)
|..|++|.+ ++ +|+.+.++||+|.+.... ...++++|||||+||||++
T Consensus 114 ~~~~~~G~~S~~L~~-l~----------~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~ 182 (300)
T PTZ00319 114 PSFPNGGRLSQHLYH-MK----------LGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPML 182 (300)
T ss_pred CCCCCCCChhhhhhc-CC----------CCCEEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHH
Confidence 889999853 33 599999999999874221 1235899999999999999
Q ss_pred HHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCC-CCCcchhhhcchhhhh
Q 011270 214 SILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE-QSSVTVREVLNDLSLV 292 (489)
Q Consensus 214 sil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~-~~~~~~~g~v~~~~~~ 292 (489)
+|+++++.+. ....+++|+|++|+.+++.+.+++.+ +. ...++++...+++++ ..|.+..|++++..+.
T Consensus 183 sml~~l~~~~-----~~~~~i~liyg~r~~~dl~~~~eL~~-~~----~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~ 252 (300)
T PTZ00319 183 QIIHAIKKNK-----EDRTKVFLVYANQTEDDILLRKELDE-AA----KDPRFHVWYTLDREATPEWKYGTGYVDEEMLR 252 (300)
T ss_pred HHHHHHHhCC-----CCCceEEEEEecCCHHHhhHHHHHHH-Hh----hCCCEEEEEEECCCCCCCcccccceeCHHHHH
Confidence 9999998642 12358999999999999999999876 32 235788888888743 4456677999887666
Q ss_pred HhhhcCC-----CCceEEecCCcHHHHH
Q 011270 293 RAVRFGT-----QSNYAVNGLESLIWMA 315 (489)
Q Consensus 293 ~~~~~~~-----~~~~~v~g~g~~~~~a 315 (489)
+.+.... ..+..++.||++.|+.
T Consensus 253 ~~~~~~~~~~~~~~~~~vyiCGp~~mv~ 280 (300)
T PTZ00319 253 AHLPVPDPQNSGIKKVMALMCGPPPMLQ 280 (300)
T ss_pred hhcCCccccccccCCeEEEEECCHHHHH
Confidence 5543211 0223445555555554
No 52
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.92 E-value=5e-24 Score=209.16 Aligned_cols=198 Identities=15% Similarity=0.215 Sum_probs=144.9
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIH 166 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~~~~ 166 (489)
.+.+++....+++++.+.++. +..|+||||+.|.+|..+ .|||||++. +++.++|+||..|..|..|.+ ++
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~--~~~~~pGQ~v~l~~~~~~---~~pySi~~~---~~~~l~~~Vk~~G~~S~~L~~-l~ 77 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSY--DGPVKPGQFFEVSLPKYG---EAPISVSGI---GEGYIDLTIRRVGKVTDEVFT-LK 77 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCC--CCCCCCCcEEEEEecCCC---ccceecCCC---CCCeEEEEEEeCchhhHHHHc-CC
Confidence 467788888889999998865 367999999999998743 589999874 467899999999999998864 33
Q ss_pred hcccCCcCcCcceeEEEeCCCCC-CCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcch
Q 011270 167 AELDSDADQMRCIPVAIEGPYGP-ATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 245 (489)
Q Consensus 167 ~~~~~~~~~~~g~~v~v~GPyG~-~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~ 245 (489)
+|+.+.|+||||. +..+....++++|||||+||||+++|+++++.+. ...++++|+|++|+.++
T Consensus 78 ----------~Gd~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~-----~~~~~v~L~~~~r~~~~ 142 (261)
T TIGR02911 78 ----------EGDNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNP-----KEIKSLNLILGFKTPDD 142 (261)
T ss_pred ----------CCCEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCc-----ccCceEEEEEecCCHHH
Confidence 5899999999998 5433335679999999999999999999987642 12368999999999999
Q ss_pred hhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHH
Q 011270 246 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 246 l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav 317 (489)
+.+.+++.++.. ..+ +.+.+.++++.+.+..|++++......... .....++.||++.|+.++
T Consensus 143 ~~~~~eL~~l~~-----~~~--~~~~~~~~~~~~~~~~g~v~~~l~~~~~~~--~~~~~v~lCGp~~mv~~~ 205 (261)
T TIGR02911 143 ILFKEDIAEWKG-----NIN--LTLTLDEAEEDYKGNIGLVTKYIPELTLKD--IEEVQAIVVGPPIMMKFT 205 (261)
T ss_pred hhHHHHHHHHHh-----cCc--EEEEEcCCCCCCcCCeeccCHhHHhccCCC--ccceEEEEECCHHHHHHH
Confidence 999998876542 123 344455554555556677775432221111 123345555566666654
No 53
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.92 E-value=5.9e-24 Score=221.43 Aligned_cols=209 Identities=14% Similarity=0.232 Sum_probs=153.7
Q ss_pred eeEEEEEEeCCCeEEEEeecC--CCCcccCCeEEEEecCCC-----------------------------CCcceeeeEE
Q 011270 88 TCILSARVFPSKAIELILPKH--AGLKFTPTSVIFMKIPSI-----------------------------SKFQWHSFSI 136 (489)
Q Consensus 88 ~~vv~~~~~~~~~~~l~~~~~--~~~~~~pGQ~v~l~~p~~-----------------------------s~~~~hPFSI 136 (489)
.++++.+.+++++.++++..+ .++.|+||||+.|.+|.. +...+|||||
T Consensus 132 ~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySi 211 (405)
T TIGR01941 132 CEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAYSM 211 (405)
T ss_pred eEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceeecC
Confidence 345566667788888888665 347899999999999743 1235799999
Q ss_pred eecCCCCCCeEEEEEEe-----------CCCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEe
Q 011270 137 TSSSSVDDQTMSLIVKC-----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAG 205 (489)
Q Consensus 137 as~p~~~~~~l~l~Ik~-----------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAG 205 (489)
+|.|. +++.++|+||. .|..|.+|++ ++ +|+.+.+.||+|.+... ...+++|||||
T Consensus 212 as~p~-~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~i~gP~G~f~l~-~~~~~lvlIAg 278 (405)
T TIGR01941 212 ANYPA-EKGIIKLNVRIATPPFINSDIPPGIMSSYIFS-LK----------PGDKVTISGPFGEFFAK-DTDAEMVFIGG 278 (405)
T ss_pred CCCCC-CCCeEEEEEEEeccCcccCCCCCCcHHHHHhc-CC----------CcCEEEEEeccCCCeec-CCCCCEEEEec
Confidence 99985 56789999996 3889999885 43 59999999999998754 35578999999
Q ss_pred CCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCC--CCCcchh
Q 011270 206 GIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE--QSSVTVR 283 (489)
Q Consensus 206 GiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~--~~~~~~~ 283 (489)
|+||||++||+++++.+. ...++++|+|++|+.+++.+.+++.+... +..++++.+++++++ +.+.+.+
T Consensus 279 GtGIaP~lsmi~~~l~~~-----~~~~~v~l~~g~R~~~dl~~~~el~~l~~----~~~~~~~~~~~s~~~~~~~~~g~~ 349 (405)
T TIGR01941 279 GAGMAPMRSHIFDQLKRL-----KSKRKISFWYGARSLREMFYQEDFDQLEA----ENPNFVWHVALSDPQPEDNWTGYT 349 (405)
T ss_pred CcCcchHHHHHHHHHhcC-----CCCCeEEEEEecCCHHHHhHHHHHHHHHH----hCCCeEEEEEeCCCCccCCCCCcc
Confidence 999999999999877532 12368999999999999999888866432 335788888888653 3456677
Q ss_pred hhcchhhhhHhhh-cCCCCceEEecCCcHHHHHHHH
Q 011270 284 EVLNDLSLVRAVR-FGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 284 g~v~~~~~~~~~~-~~~~~~~~v~g~g~~~~~aav~ 318 (489)
|++++....+.+. ........+|.|||+.|+.++.
T Consensus 350 G~v~~~l~~~~l~~~~~~~~~~vylCGP~~m~~av~ 385 (405)
T TIGR01941 350 GFIHNVLYENYLKDHDAPEDCEFYMCGPPMMNAAVI 385 (405)
T ss_pred ceeCHHHHHhhhcccCCCCCeEEEEeCCHHHHHHHH
Confidence 8887655433322 1112234456666667777664
No 54
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.91 E-value=4e-23 Score=201.01 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=121.4
Q ss_pred CeEEEEeecC-CCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC-------CCccHHHHHHHHhccc
Q 011270 99 KAIELILPKH-AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD-------GEWTSSLYQMIHAELD 170 (489)
Q Consensus 99 ~~~~l~~~~~-~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~-------G~~T~~L~~~~~~~~~ 170 (489)
++.++++..+ +.+.|+||||+.|.++. ...+|||||+|.|. ++.++|+||.. |..|..|++.++
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~--~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~~---- 88 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPA--DGALELLVRQVRHADGGLGLGSGWLTRHAP---- 88 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCC--CCEEEEEEEEeccCCCCCeeechhhhhCCC----
Confidence 5888888776 57899999999999764 34779999999983 57899999984 448899987654
Q ss_pred CCcCcCcceeEEEeCCCC-CCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcc-hhhh
Q 011270 171 SDADQMRCIPVAIEGPYG-PATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ-EICL 248 (489)
Q Consensus 171 ~~~~~~~g~~v~v~GPyG-~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~-~l~~ 248 (489)
+|+.|.+.||.| .+..+ ....++||||||+||||++||++++.... ..++.|+|++|+.+ ++.+
T Consensus 89 ------~Gd~v~i~gp~gg~F~~~-~~~~~~vlIAgGtGIaP~~s~l~~~~~~~-------~~~~~l~~g~r~~~~d~~~ 154 (245)
T cd06200 89 ------IGASVALRLRENPGFHLP-DDGRPLILIGNGTGLAGLRSHLRARARAG-------RHRNWLLFGERQAAHDFFC 154 (245)
T ss_pred ------CCCEEEEEecCCCcccCC-CCCCCEEEEecCcChHHHHHHHHHHHhcc-------CCCeEEEEecCCccccHhH
Confidence 589999999876 45432 34578999999999999999999988642 25689999999984 8888
Q ss_pred HHhHhHHhhhccCCCcceEEEEEEeCCCCC
Q 011270 249 LNSISPLLSNQQSKKWHLTLKVFVTQEEQS 278 (489)
Q Consensus 249 ~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~ 278 (489)
.+++.+... ...+.++++.+|++++.
T Consensus 155 ~~el~~~~~----~~~~~~~~~~~s~~~~~ 180 (245)
T cd06200 155 REELEAWQA----AGHLARLDLAFSRDQAQ 180 (245)
T ss_pred HHHHHHHHH----CCCcceEEEEEccCCCC
Confidence 888876543 23456777888876643
No 55
>PRK05802 hypothetical protein; Provisional
Probab=99.91 E-value=3.3e-23 Score=208.45 Aligned_cols=148 Identities=18% Similarity=0.253 Sum_probs=122.5
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCC---CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQ 163 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~ 163 (489)
..++++.+.+++++.++++..|.. ..++||||++|++|..+.+..|||||++.|. +++.++|+||..|..|+.|.+
T Consensus 66 ~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~-~~g~l~l~ik~~G~~T~~L~~ 144 (320)
T PRK05802 66 ECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADT-EENIIKVAIEIRGVKTKKIAK 144 (320)
T ss_pred eEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCC-CCCEEEEEEEecChhHHHHhc
Confidence 367889999999999999987643 3479999999999866666789999999875 568899999999999999974
Q ss_pred HHHhcccCCcCcCcceeEEEeCCCCCC--CCC---CCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEE
Q 011270 164 MIHAELDSDADQMRCIPVAIEGPYGPA--TMD---FLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIY 238 (489)
Q Consensus 164 ~~~~~~~~~~~~~~g~~v~v~GPyG~~--~~~---~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw 238 (489)
++ +|+.+.|.||||+. ... ....+++++||||+||||++++++++.+++ .+++++|
T Consensus 145 -l~----------~Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~--------~~v~li~ 205 (320)
T PRK05802 145 -LN----------KGDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG--------NKIIVII 205 (320)
T ss_pred -CC----------CCCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC--------CcEEEEE
Confidence 33 58999999999753 221 123468999999999999999999998652 4799999
Q ss_pred EeCCcchhhhHHhHhH
Q 011270 239 VIKSSQEICLLNSISP 254 (489)
Q Consensus 239 ~~r~~~~l~~~~~l~~ 254 (489)
++|+.+++.+.+++.+
T Consensus 206 g~r~~~~~~~~~el~~ 221 (320)
T PRK05802 206 DKGPFKNNFIKEYLEL 221 (320)
T ss_pred eCCCHHHHHHHHHHHH
Confidence 9999999988887754
No 56
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.91 E-value=5.6e-23 Score=202.27 Aligned_cols=162 Identities=20% Similarity=0.218 Sum_probs=129.2
Q ss_pred CCCeEEEEeecC--CCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC-----------CCccHHHHH
Q 011270 97 PSKAIELILPKH--AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD-----------GEWTSSLYQ 163 (489)
Q Consensus 97 ~~~~~~l~~~~~--~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~-----------G~~T~~L~~ 163 (489)
+.++.+|++..+ ....|+||||+.|.+|. ....|||||+|.|.++++.++|+||.. |..|..|.+
T Consensus 14 ~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~ 91 (267)
T cd06182 14 PRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG 91 (267)
T ss_pred CCceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh
Confidence 457888999877 57899999999999875 346899999999864468999999985 788999875
Q ss_pred HHHhcccCCcCcCcceeEEEeCCCC-CCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC
Q 011270 164 MIHAELDSDADQMRCIPVAIEGPYG-PATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 242 (489)
Q Consensus 164 ~~~~~~~~~~~~~~g~~v~v~GPyG-~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~ 242 (489)
++ +|+.+.+.||+| .+..+....+++||||||+||||++||+++++... ++.....++.|+|++|+
T Consensus 92 -lk----------~Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~--~~~~~~~~v~l~~g~r~ 158 (267)
T cd06182 92 -LQ----------LGAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALR--ANGKARGPAWLFFGCRN 158 (267)
T ss_pred -CC----------CCCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhh--hccccCCCEEEEEeCCC
Confidence 33 589999999999 77665444689999999999999999999998631 01112368999999999
Q ss_pred c-chhhhHHhHhHHhhhccCCCcceEEEEEEeCCCC
Q 011270 243 S-QEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQ 277 (489)
Q Consensus 243 ~-~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~ 277 (489)
. +++.+.+++.+... ...+++++..+++++.
T Consensus 159 ~~~d~~~~del~~~~~----~~~~~~~~~~~S~~~~ 190 (267)
T cd06182 159 FASDYLYREELQEALK----DGALTRLDVAFSREQA 190 (267)
T ss_pred CcccccHHHHHHHHHh----CCCcceEEEEEccCCC
Confidence 9 99998888876543 2357788888887654
No 57
>PRK05713 hypothetical protein; Provisional
Probab=99.91 E-value=4e-23 Score=208.11 Aligned_cols=162 Identities=16% Similarity=0.267 Sum_probs=129.4
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEe--CCCccHHHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLYQM 164 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~--~G~~T~~L~~~ 164 (489)
..++++++.+++++.++++..+..+.|+||||+.|.++. ..+|||||+|.|. +++.++|+||. .|.+|..|.+
T Consensus 93 ~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~---~~~R~ySias~p~-~~~~l~~~I~~~~~G~~s~~l~~- 167 (312)
T PRK05713 93 PARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG---GVARPYSLASLPG-EDPFLEFHIDCSRPGAFCDAARQ- 167 (312)
T ss_pred CeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCC---CcccccccCcCCC-CCCeEEEEEEEcCCCccchhhhc-
Confidence 467888888999999999987667899999999999864 2579999999885 56789999984 6788988743
Q ss_pred HHhcccCCcCcCcceeEEEeCCCCCC-CCCCC-CCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC
Q 011270 165 IHAELDSDADQMRCIPVAIEGPYGPA-TMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 242 (489)
Q Consensus 165 ~~~~~~~~~~~~~g~~v~v~GPyG~~-~~~~~-~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~ 242 (489)
++ +|+.+.+.||+|.+ ..+.. ..+++||||||+||||++||+++++..+ ..++++|+|++|+
T Consensus 168 l~----------~Gd~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~------~~~~v~l~~g~r~ 231 (312)
T PRK05713 168 LQ----------VGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG------HQGPIRLLHLARD 231 (312)
T ss_pred CC----------CCCEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC------CCCcEEEEEEcCc
Confidence 33 58999999999853 22322 4578999999999999999999988652 2367999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCcceEEEEEEe
Q 011270 243 SQEICLLNSISPLLSNQQSKKWHLTLKVFVT 273 (489)
Q Consensus 243 ~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vT 273 (489)
.+++.+.+++.++.. +..++++.+..+
T Consensus 232 ~~d~~~~~el~~l~~----~~~~~~~~~~~~ 258 (312)
T PRK05713 232 SAGHYLAEPLAALAG----RHPQLSVELVTA 258 (312)
T ss_pred hHHhhhHHHHHHHHH----HCCCcEEEEEEC
Confidence 999999888876532 234677776655
No 58
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.90 E-value=7.5e-23 Score=197.64 Aligned_cols=135 Identities=22% Similarity=0.392 Sum_probs=116.2
Q ss_pred eEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHHHHHhc
Q 011270 89 CILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAE 168 (489)
Q Consensus 89 ~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~~~~~~ 168 (489)
++++++.+++++.+++++. +..|+||||+.|.+|.. ..|||||+|.| +.++|+||..|.+|++|.+ ++
T Consensus 2 ~v~~~~~~t~~~~~~~l~~--~~~~~pGQ~v~l~~~~~---~~~~~Si~s~~----~~l~~~v~~~G~~s~~L~~-l~-- 69 (233)
T cd06220 2 TIKEVIDETPTVKTFVFDW--DFDFKPGQFVMVWVPGV---DEIPMSLSYID----GPNSITVKKVGEATSALHD-LK-- 69 (233)
T ss_pred EEEEEEEEcCCEEEEEEec--CCCCCCCceEEEEeCCC---CcceeEEecCC----CeEEEEEEecChHHHHHHh-cC--
Confidence 5778899999999999976 35899999999999864 35999999986 6899999999999999986 44
Q ss_pred ccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhh
Q 011270 169 LDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICL 248 (489)
Q Consensus 169 ~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~ 248 (489)
+|+.+.++||+|.+.. .. +++++|||||+||||++++++++..+ ++++|+|++|+.+++.+
T Consensus 70 --------~Gd~v~i~gP~G~~f~-~~-~~~~vliAgGtGitP~~sil~~~~~~---------~~i~l~~~~r~~~d~~~ 130 (233)
T cd06220 70 --------EGDKLGIRGPYGNGFE-LV-GGKVLLIGGGIGIAPLAPLAERLKKA---------ADVTVLLGARTKEELLF 130 (233)
T ss_pred --------CCCEEEEECcCCCCcc-CC-CCeEEEEecCcChHHHHHHHHHHHhc---------CCEEEEEecCChHHChh
Confidence 5899999999998321 22 68999999999999999999998752 67999999999999999
Q ss_pred HHhHhH
Q 011270 249 LNSISP 254 (489)
Q Consensus 249 ~~~l~~ 254 (489)
.+++.+
T Consensus 131 ~~eL~~ 136 (233)
T cd06220 131 LDRLRK 136 (233)
T ss_pred HHHHhh
Confidence 888754
No 59
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.90 E-value=1.8e-22 Score=196.10 Aligned_cols=209 Identities=18% Similarity=0.187 Sum_probs=171.1
Q ss_pred ceeEEEEEEeCCCeEEEEeecC---CCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEe--CCCccHHH
Q 011270 87 ETCILSARVFPSKAIELILPKH---AGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSL 161 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~---~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~--~G~~T~~L 161 (489)
...+++.+.++.|+-.+.|..+ ..+....|||+++..|..+....||||..|.+. +.+++++.||. .|..|++|
T Consensus 53 ~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~-~~g~~~l~VK~Y~~G~mS~~l 131 (286)
T KOG0534|consen 53 PFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDD-DKGYFDLVVKVYPKGKMSQHL 131 (286)
T ss_pred EEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCcc-ccceEEEEEEeccCCcccHHH
Confidence 3567788888888877776554 357889999999999988778899999999975 35799999998 89999999
Q ss_pred HHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeC
Q 011270 162 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 241 (489)
Q Consensus 162 ~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r 241 (489)
.++. .|+.|.+.||.|....+...++++.|||||+||||+++++++++... ....++.|+|+++
T Consensus 132 ~~Lk-----------iGd~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~-----~d~tki~lly~N~ 195 (286)
T KOG0534|consen 132 DSLK-----------IGDTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDP-----EDTTKISLLYANK 195 (286)
T ss_pred hcCC-----------CCCEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCC-----CCCcEEEEEEecC
Confidence 8764 49999999999998766667899999999999999999999999763 2357899999999
Q ss_pred CcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHH
Q 011270 242 SSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMA 315 (489)
Q Consensus 242 ~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~a 315 (489)
+.+|+.+.+++..+..+. ..++.++.+++++++.|.+..|++++..+.+.+.........++.||++.|..
T Consensus 196 te~DILlr~eL~~la~~~---p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~m~~ 266 (286)
T KOG0534|consen 196 TEDDILLREELEELASKY---PERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPPMIN 266 (286)
T ss_pred CccccchHHHHHHHHhhC---cceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHHHHh
Confidence 999999999887765432 24899999999999999999999999988888755443345555555555554
No 60
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.90 E-value=3.7e-22 Score=194.63 Aligned_cols=196 Identities=18% Similarity=0.277 Sum_probs=150.1
Q ss_pred eeEEEEEEeCCCeEEEEeecCCC-CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEE--eCCCccHHHHHH
Q 011270 88 TCILSARVFPSKAIELILPKHAG-LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVK--CDGEWTSSLYQM 164 (489)
Q Consensus 88 ~~vv~~~~~~~~~~~l~~~~~~~-~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik--~~G~~T~~L~~~ 164 (489)
.+|.+++.+++++..+.+..+.. +.++||||+.|+.|. ...+|||+++.+. +.+.++|+|+ ..|..|+++.++
T Consensus 10 ~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~-~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 10 YKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPD-DKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred cEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCC-cCCcEEEEEEEEeCChHHHHHhhc
Confidence 57889999999999888876554 689999999999998 3889999999975 4565666665 499999999887
Q ss_pred HHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcc
Q 011270 165 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 244 (489)
Q Consensus 165 ~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~ 244 (489)
. .|+.+.+.||||++.......+++++||||+|++|++++++++..++ ...+++++|+.|+.+
T Consensus 86 k-----------~gd~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~------~~~~V~~~~G~~~~~ 148 (252)
T COG0543 86 K-----------EGDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG------DANKVTLLYGARTAK 148 (252)
T ss_pred c-----------CCCEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC------CCceEEEEEeccChh
Confidence 3 38889999999998754444555999999999999999999998742 347899999999999
Q ss_pred hhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 245 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 245 ~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
++.+.+++.+... + ++.+.+. +.|.+.+|+++.....+.... ....++.||++.|+.++.
T Consensus 149 dl~~~~el~~~~~-------~-~~~~~~~---~~~~G~~G~v~~~~~~~~~~~---~~~~v~~cGp~~M~~~v~ 208 (252)
T COG0543 149 DLLLLDELEELAE-------K-EVHPVTD---DGWKGRKGFVTTDVLKELLDL---EVDDVYICGPPAMVKAVR 208 (252)
T ss_pred hcccHHHHHHhhc-------C-cEEEEEC---CCCCccCcceeHHHHhhhccc---cCCEEEEECCHHHHHHHH
Confidence 9999998865431 1 3333332 567778888854444443222 345666677777877764
No 61
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.89 E-value=4.5e-22 Score=206.82 Aligned_cols=181 Identities=13% Similarity=0.214 Sum_probs=134.7
Q ss_pred ceeEEEEEEeC-----CCeEEEEeecCC-CCcccCCeEEEEecCCCC----CcceeeeEEeecCCCC---CCeEEEEEEe
Q 011270 87 ETCILSARVFP-----SKAIELILPKHA-GLKFTPTSVIFMKIPSIS----KFQWHSFSITSSSSVD---DQTMSLIVKC 153 (489)
Q Consensus 87 ~~~vv~~~~~~-----~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~s----~~~~hPFSIas~p~~~---~~~l~l~Ik~ 153 (489)
..+|+..+.++ +++.+|++..+. .+.|+||||+.|.+|..+ +..+|||||+|.|..+ .+.++|+||.
T Consensus 144 ~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~ 223 (411)
T TIGR03224 144 TATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKR 223 (411)
T ss_pred EEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEE
Confidence 35678888884 488899997655 688999999999988532 2467999999986322 1479999997
Q ss_pred C----------CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCC-CCCCCCeEEEEEeCCChhhHHHHHHHHHHh
Q 011270 154 D----------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATM-DFLRYDSLLLVAGGIGITPFLSILQEIASA 222 (489)
Q Consensus 154 ~----------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~-~~~~~~~vvlIAGGiGITP~lsil~~l~~~ 222 (489)
. |..|++|.+ ++ +|++|.|.||+|.+.. +.....++||||||+|||||+||++++...
T Consensus 224 v~~~~~g~~~~G~~S~~L~~-lk----------~Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~ 292 (411)
T TIGR03224 224 VTTDHQGNAVRGVASNYLCD-LK----------KGDKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRR 292 (411)
T ss_pred EEecCCCCcCcccchhHHhc-CC----------CcCEEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHH
Confidence 4 778999987 44 5999999999998542 222346899999999999999999998753
Q ss_pred hcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhh
Q 011270 223 QSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLS 290 (489)
Q Consensus 223 ~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~ 290 (489)
... ....+++|+|++|+.+++.+.+++.++.. ..+++++.++++++. .+|++++..
T Consensus 293 ~~~---~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~------~~~~~~~~~sr~~~~---~~g~V~d~l 348 (411)
T TIGR03224 293 RDH---GEGGKLMLFFGARTKEELPYFGPLQKLPK------DFIDINFAFSRTPEQ---PKRYVQDAI 348 (411)
T ss_pred hhc---CCCCCEEEEEecCccccchHHHHHHHHHh------cCceEEEEeccCCcc---CcccHhhHH
Confidence 211 12468999999999999999998865432 234566677775432 356666543
No 62
>PLN02252 nitrate reductase [NADPH]
Probab=99.89 E-value=5.9e-22 Score=221.38 Aligned_cols=208 Identities=15% Similarity=0.179 Sum_probs=158.0
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCC---CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC---------
Q 011270 87 ETCILSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--------- 154 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--------- 154 (489)
.+++++.+.+++++..|+|..+.+ +.++||||++|.++..+....||||++|.+. +++.++|+||..
T Consensus 636 ~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~-~~g~lel~VK~~~~~~~~~~p 714 (888)
T PLN02252 636 PCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDD-EVGHFELVIKVYFKNVHPKFP 714 (888)
T ss_pred EEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCC-CCCEEEEEEEEEeccccCccC
Confidence 467889999999999999876543 5799999999998755555789999999875 567999999974
Q ss_pred --CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCC--------C--CCCCCeEEEEEeCCChhhHHHHHHHHHHh
Q 011270 155 --GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATM--------D--FLRYDSLLLVAGGIGITPFLSILQEIASA 222 (489)
Q Consensus 155 --G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~--------~--~~~~~~vvlIAGGiGITP~lsil~~l~~~ 222 (489)
|..|+.|.+ ++ +|+.|.|.||+|.+.. + ....++++|||||+||||+++|+++++..
T Consensus 715 ~gG~~S~~L~~-L~----------vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~ 783 (888)
T PLN02252 715 NGGLMSQYLDS-LP----------IGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRD 783 (888)
T ss_pred CCCchhhHHhc-CC----------CCCEEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhc
Confidence 778888854 33 5899999999997532 1 11347899999999999999999999864
Q ss_pred hcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCC-CCCcchhhhcchhhhhHhhhcCCCC
Q 011270 223 QSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE-QSSVTVREVLNDLSLVRAVRFGTQS 301 (489)
Q Consensus 223 ~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~-~~~~~~~g~v~~~~~~~~~~~~~~~ 301 (489)
. ...++++|+|++|+.+|+.+.+++.++..+ ...++++.+.+|++. +.|.+.+|++++..+.+..... ..
T Consensus 784 ~-----~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~---~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~-~~ 854 (888)
T PLN02252 784 P-----EDKTEMSLVYANRTEDDILLREELDRWAAE---HPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEG-GD 854 (888)
T ss_pred c-----CCCCcEEEEEEECCHHHhhHHHHHHHHHHh---CCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccC-CC
Confidence 2 124689999999999999999998765432 125788888888765 5677788999987666654322 23
Q ss_pred ceEEecCCcHHHHH
Q 011270 302 NYAVNGLESLIWMA 315 (489)
Q Consensus 302 ~~~v~g~g~~~~~a 315 (489)
...++.||++.|+.
T Consensus 855 ~~~vyiCGPp~Mi~ 868 (888)
T PLN02252 855 ETLALMCGPPPMIE 868 (888)
T ss_pred CeEEEEeCCHHHHH
Confidence 34445555555554
No 63
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.88 E-value=3.6e-21 Score=191.62 Aligned_cols=161 Identities=13% Similarity=0.147 Sum_probs=125.2
Q ss_pred ceeEEEEEEeC----CCeEEEEeecCC-------CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEe--
Q 011270 87 ETCILSARVFP----SKAIELILPKHA-------GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC-- 153 (489)
Q Consensus 87 ~~~vv~~~~~~----~~~~~l~~~~~~-------~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~-- 153 (489)
..++++.+.++ +++..+++..+. ...|+||||+.|..++. ...|||||+|.| +++.++|+||.
T Consensus 47 ~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~--~~~R~YSias~p--~~g~l~l~Vk~~~ 122 (289)
T cd06201 47 ALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGS--DVPRFYSLASSS--SDGFLEICVRKHP 122 (289)
T ss_pred ceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCC--CCCceEecCCCC--CCCeEEEEEEeCC
Confidence 46778888877 588889987654 46799999999986643 357999999987 45789999997
Q ss_pred CCCccHHHHHHHHhcccCCcCcCcceeEEEe-CCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCc
Q 011270 154 DGEWTSSLYQMIHAELDSDADQMRCIPVAIE-GPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPS 232 (489)
Q Consensus 154 ~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~-GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~ 232 (489)
.|..|++|++ ++ +|+.+.+. +|+|.+..+ ...++++|||||+||||++||+++... .+
T Consensus 123 ~G~~S~~L~~-l~----------~Gd~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~~---------~~ 181 (289)
T cd06201 123 GGLCSGYLHG-LK----------PGDTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRANAA---------RR 181 (289)
T ss_pred CccchhhHhh-CC----------CcCEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhhhc---------cC
Confidence 7889999986 44 58999987 478887653 445789999999999999999987521 26
Q ss_pred eEEEEEEeCCcc-hhhhHHhHhHHhhhccCCCcceEEEEEEeCCC
Q 011270 233 KVQLIYVIKSSQ-EICLLNSISPLLSNQQSKKWHLTLKVFVTQEE 276 (489)
Q Consensus 233 ~i~lvw~~r~~~-~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~ 276 (489)
+++|+|++|+.+ ++.+.+++.+... +..++.++..++++.
T Consensus 182 ~v~L~~g~r~~~~d~~~~~eL~~l~~----~~~~~~~~~~~s~~~ 222 (289)
T cd06201 182 PMHLYWGGRDPASDFLYEDELDQYLA----DGRLTQLHTAFSRTP 222 (289)
T ss_pred CEEEEEEecCcccchHHHHHHHHHHH----cCCCceEEEEECCCC
Confidence 799999999985 7888888766432 224566777777653
No 64
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.88 E-value=3.5e-22 Score=180.71 Aligned_cols=80 Identities=29% Similarity=0.538 Sum_probs=59.5
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCC
Q 011270 197 YDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE 276 (489)
Q Consensus 197 ~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~ 276 (489)
|+++||||||+||||++|++++++.... .+....++++|+|++|+.+++.|+.+++..+...... .++++++|+|++.
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~-~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~-~~~~~~iyvT~~~ 78 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQN-RGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRL-GNVEVHIYVTRES 78 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHH-TT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHH-TSEEEEEEETT--
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhc-cccccccceEEEEeeCchhhhhhhhHHHHHHHHHhcc-ccceEEEEEcCCc
Confidence 7899999999999999999999998753 2334568999999999999999999877665443322 5899999999986
Q ss_pred CC
Q 011270 277 QS 278 (489)
Q Consensus 277 ~~ 278 (489)
..
T Consensus 79 ~~ 80 (156)
T PF08030_consen 79 SA 80 (156)
T ss_dssp --
T ss_pred cc
Confidence 43
No 65
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.85 E-value=2.1e-20 Score=209.32 Aligned_cols=195 Identities=18% Similarity=0.294 Sum_probs=145.6
Q ss_pred eeEEEEEEeCCCeEEEEeecCC-CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHHHHH
Q 011270 88 TCILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIH 166 (489)
Q Consensus 88 ~~vv~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~~~~ 166 (489)
+.+++.+.+++++..|++..|. ...++||||+.|+++..+ ++|||||++.+. +++.++|+||..|..|+.|.++ +
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~-~~g~i~~~vk~vG~~T~~L~~l-~ 77 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADP-EKGTITLVIQEVGLSTTKLCEL-N 77 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCC-CCCEEEEEEEEcCchHHHHhcC-C
Confidence 3578888999999999997654 357999999999997543 579999999875 5688999999999999999853 3
Q ss_pred hcccCCcCcCcceeE-EEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcch
Q 011270 167 AELDSDADQMRCIPV-AIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 245 (489)
Q Consensus 167 ~~~~~~~~~~~g~~v-~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~ 245 (489)
+|+.+ .|.||||.+... ...++++|||||+||||++++++++..++ .+++++|++|+.++
T Consensus 78 ----------~Gd~v~~v~GP~G~~~~~-~~~~~~llvaGG~GiaPl~~l~~~l~~~~--------~~v~l~~g~r~~~~ 138 (752)
T PRK12778 78 ----------EGDYITDVVGPLGNPSEI-ENYGTVVCAGGGVGVAPMLPIVKALKAAG--------NRVITILGGRSKEL 138 (752)
T ss_pred ----------CCCEeCeEeCCCCCCccC-CCCCeEEEEECCEeHHHHHHHHHHHHHCC--------CeEEEEeccCCHHH
Confidence 58999 799999998643 34579999999999999999999998752 57999999999999
Q ss_pred hhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHHH
Q 011270 246 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVG 319 (489)
Q Consensus 246 l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~~ 319 (489)
+.+.+++.+.. . . + .+.| + +.+.+.+|++++. +.+...... ....++.|||+.||.++..
T Consensus 139 l~~~~el~~~~-----~--~--~-~~~t-~-dg~~g~~G~v~~~-l~~~~~~~~-~~~~vy~CGP~~M~~~v~~ 198 (752)
T PRK12778 139 IILEDEMRESS-----D--E--V-IIMT-D-DGSYGRKGLVTDG-LEEVIKRET-KVDKVFAIGPAIMMKFVCL 198 (752)
T ss_pred hhhHHHHHhhc-----C--e--E-EEEE-C-CCCCCCcccHHHH-HHHHhhcCC-CCCEEEEECCHHHHHHHHH
Confidence 99988886431 1 1 1 1223 3 3356677888764 233322111 1224556666667766644
No 66
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.83 E-value=1.6e-19 Score=209.62 Aligned_cols=212 Identities=13% Similarity=0.113 Sum_probs=152.9
Q ss_pred eeEEEEE---EeCCCeEEEEeecCC---CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEe-CCCccHH
Q 011270 88 TCILSAR---VFPSKAIELILPKHA---GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC-DGEWTSS 160 (489)
Q Consensus 88 ~~vv~~~---~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~-~G~~T~~ 160 (489)
+.+.+++ ..+.++..++|..+. .+.|+|||||.|.++..+....|+||++|.|. +.+.++|+||. .|..|+.
T Consensus 917 ~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr~~~G~~S~~ 995 (1167)
T PTZ00306 917 VVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILARGDKGTLKEW 995 (1167)
T ss_pred EEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEEcCCChhHHH
Confidence 4556655 346787777776543 25799999999998644444579999999985 56789999998 5889998
Q ss_pred HHHHHHhcccCCcCcCcceeEEEeCCCCCC----------CCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCC
Q 011270 161 LYQMIHAELDSDADQMRCIPVAIEGPYGPA----------TMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRF 230 (489)
Q Consensus 161 L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~----------~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~ 230 (489)
|.+ ++ +|+.|.|.||+|.. ..+....++++|||||+||||++||+++++.+. ....
T Consensus 996 L~~-l~----------~Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~---~~~~ 1061 (1167)
T PTZ00306 996 ISA-LR----------PGDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKP---YVDS 1061 (1167)
T ss_pred Hhh-CC----------CCCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCc---ccCC
Confidence 854 33 59999999998832 112234578999999999999999999988642 0012
Q ss_pred CceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCc
Q 011270 231 PSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLES 310 (489)
Q Consensus 231 ~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~ 310 (489)
.++++|+|++|+.+++.+.+++.++..+ ...++++++.++++++.|.+..|++++..+.+.+.... ....+|.|||
T Consensus 1062 ~~~i~Llyg~r~~~dl~~~~eL~~l~~~---~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~-~~~~vyiCGP 1137 (1167)
T PTZ00306 1062 IESIRLIYAAEDVSELTYRELLESYRKE---NPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPS-KDLLVAICGP 1137 (1167)
T ss_pred CceEEEEEEeCCHHHhhHHHHHHHHHHH---CCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCC-CCeEEEEeCC
Confidence 3689999999999999999988765432 12468888888887777777789888766555543222 2344555556
Q ss_pred HHHHHHHH
Q 011270 311 LIWMAALV 318 (489)
Q Consensus 311 ~~~~aav~ 318 (489)
+.|+.++.
T Consensus 1138 ~~mv~~v~ 1145 (1167)
T PTZ00306 1138 PVMQRAVK 1145 (1167)
T ss_pred HHHHHHHH
Confidence 66666654
No 67
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.83 E-value=3.1e-19 Score=202.05 Aligned_cols=206 Identities=14% Similarity=0.141 Sum_probs=144.3
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCC-CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAG-LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMI 165 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~-~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~~~ 165 (489)
...|++.+.+++++..+++..+.. ..++||||+.|.++..+ ++|||||++.|. +++.++|+||..|..|..|.+ +
T Consensus 650 ~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~-~~g~i~l~Vk~vG~~T~~L~~-l 725 (944)
T PRK12779 650 PQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDA-EKGTIDLVVQGMGTSSLEINR-M 725 (944)
T ss_pred EEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCC-CCCEEEEEEEeeccHHHHHhc-C
Confidence 467889999999999999976543 57999999999986443 569999998864 567899999999988876654 3
Q ss_pred HhcccCCcCcCcceeEE-EeCCCCCCCCCC--CCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC
Q 011270 166 HAELDSDADQMRCIPVA-IEGPYGPATMDF--LRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 242 (489)
Q Consensus 166 ~~~~~~~~~~~~g~~v~-v~GPyG~~~~~~--~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~ 242 (489)
+ +|+.+. |.||+|.+.... ...+++||||||+||||++++++++...+ .+++++|++|+
T Consensus 726 k----------~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g--------~~V~li~G~Rs 787 (944)
T PRK12779 726 A----------IGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG--------NHVTLISGFRA 787 (944)
T ss_pred C----------CcCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC--------CCEEEEEEeCC
Confidence 3 589995 999999874211 12368999999999999999999987642 57999999999
Q ss_pred cchhhhHHhHhH--HhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcC-C--CCceEEecCCcHHHHHHH
Q 011270 243 SQEICLLNSISP--LLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFG-T--QSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 243 ~~~l~~~~~l~~--~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~-~--~~~~~v~g~g~~~~~aav 317 (489)
.+++.+.+++.+ .+.+. ....+++ +++.++ .+.+.+|++++.......... . .....++.|||+.||.++
T Consensus 788 ~edl~~~del~~L~~la~~--~~~~~~v--~~ttdd-gs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav 862 (944)
T PRK12779 788 KEFLFWTGDDERVGKLKAE--FGDQLDV--IYTTND-GSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGPPLMMRAV 862 (944)
T ss_pred HHHhhhHHHHHHHHHHHHH--cCCCeEE--EEEecC-CCCCCccccChHHHHHHHhcccccccCCcEEEEECCHHHHHHH
Confidence 999887665422 12211 1123333 334333 345677888865322211111 1 113456777777788776
Q ss_pred HH
Q 011270 318 VG 319 (489)
Q Consensus 318 ~~ 319 (489)
..
T Consensus 863 ~~ 864 (944)
T PRK12779 863 SD 864 (944)
T ss_pred HH
Confidence 43
No 68
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.83 E-value=1.6e-19 Score=174.62 Aligned_cols=136 Identities=10% Similarity=0.120 Sum_probs=111.0
Q ss_pred EEEEEEeCCCeEEEEeecCCC---CcccCCeEEEEecCCCC-------------------CcceeeeEEeecCCCCCCeE
Q 011270 90 ILSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSIS-------------------KFQWHSFSITSSSSVDDQTM 147 (489)
Q Consensus 90 vv~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~~s-------------------~~~~hPFSIas~p~~~~~~l 147 (489)
|++++.+++++.+|++..+.. ..|.||||+.|.+|..+ ...+|+|||++.+. +++++
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~-~~~~l 79 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDP-EAGEL 79 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcC-CCCEE
Confidence 356788899999999977654 67999999999997643 45789999999874 57889
Q ss_pred EEEEEeC---CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhc
Q 011270 148 SLIVKCD---GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQS 224 (489)
Q Consensus 148 ~l~Ik~~---G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~ 224 (489)
+|.|+.. |..|+.+.+ ++ +|+.+.+.||+|.+..+ ...+++||||||+||||+++|++++...
T Consensus 80 ~~~v~~~~~~G~~s~~l~~-l~----------~Gd~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~p~~~il~~~~~~-- 145 (235)
T cd06193 80 DIDFVLHGDEGPASRWAAS-AQ----------PGDTLGIAGPGGSFLPP-PDADWYLLAGDETALPAIAAILEELPAD-- 145 (235)
T ss_pred EEEEEeCCCCCchHHHHhh-CC----------CCCEEEEECCCCCCCCC-CCcceEEEEeccchHHHHHHHHHhCCCC--
Confidence 9999764 667888753 33 59999999999998753 3467899999999999999999987532
Q ss_pred ccCCCCCceEEEEEEeCCcchhh
Q 011270 225 NRKYRFPSKVQLIYVIKSSQEIC 247 (489)
Q Consensus 225 ~~~~~~~~~i~lvw~~r~~~~l~ 247 (489)
.++++++++|+.+++.
T Consensus 146 -------~~~~~~~~~~~~~d~~ 161 (235)
T cd06193 146 -------ARGTALIEVPDAADEQ 161 (235)
T ss_pred -------CeEEEEEEECCHHHcc
Confidence 5799999999986654
No 69
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.82 E-value=3.3e-19 Score=203.49 Aligned_cols=196 Identities=13% Similarity=0.191 Sum_probs=146.0
Q ss_pred eeEEEEEEeCCCeEEEEeecCC-CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHHHHH
Q 011270 88 TCILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIH 166 (489)
Q Consensus 88 ~~vv~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~~~~ 166 (489)
+.|++.+.+.+++..+++..|. ...++|||||.|+++..+ +.+||||++.+. +++.++|.||..|..|++|++.++
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~~--errplSIa~~~~-~~g~i~l~vk~vG~~T~~L~~~lk 78 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEGA--ERIPLTVADFDR-KKGTITMVVQALGKTTREMMTKFK 78 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCCC--eeEEEEecCcCC-CCCEEEEEEEecCcHHHHHHhcCC
Confidence 3578889999999999997764 467999999999987543 579999998764 567899999999999999976555
Q ss_pred hcccCCcCcCcceeE-EEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcch
Q 011270 167 AELDSDADQMRCIPV-AIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQE 245 (489)
Q Consensus 167 ~~~~~~~~~~~g~~v-~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~ 245 (489)
+|+.+ .+.||+|.+.. ...++++||||||+||||++++++.+...+ .+++++|+.|+.++
T Consensus 79 ----------~Gd~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~g--------~~v~li~g~R~~~~ 139 (1006)
T PRK12775 79 ----------AGDTFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEAG--------ARTTGIIGFRNKDL 139 (1006)
T ss_pred ----------CCCEEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhCC--------CcEEEEEeCCChHH
Confidence 58998 79999998753 334679999999999999999999987642 56999999999999
Q ss_pred hhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHHHH
Q 011270 246 ICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGI 320 (489)
Q Consensus 246 l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~~~ 320 (489)
+.+.+++.... .+ ++++.++ .+.+.+|++++.. .+.+.. .....++.|||+.||.++...
T Consensus 140 l~~~del~~~~-------~~----~~v~tdd-gs~G~~G~vt~~l-~~~l~~--~~~d~vy~CGP~~Mm~av~~~ 199 (1006)
T PRK12775 140 VFWEDKFGKYC-------DD----LIVCTDD-GSYGKPGFVTAAL-KEVCEK--DKPDLVVAIGPLPMMNACVET 199 (1006)
T ss_pred cccHHHHHhhc-------Cc----EEEEECC-CCCCCCCChHHHH-HHHhcc--CCCCEEEEECCHHHHHHHHHH
Confidence 98888875321 11 2333333 3556778877643 222211 112246666666777776543
No 70
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.78 E-value=8.2e-21 Score=160.18 Aligned_cols=98 Identities=37% Similarity=0.768 Sum_probs=7.1
Q ss_pred eeEEEEEEeCCCeEEEEeecCCC-CcccCCeEEEEecCCCC--CcceeeeEEeecCCCCCCeEEEEEEeCCCccHHHHHH
Q 011270 88 TCILSARVFPSKAIELILPKHAG-LKFTPTSVIFMKIPSIS--KFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQM 164 (489)
Q Consensus 88 ~~vv~~~~~~~~~~~l~~~~~~~-~~~~pGQ~v~l~~p~~s--~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~~~ 164 (489)
+.+++++.+++++++++++++.. ++|+||||+||++|.++ .+|||||||+|.| +++.++++||..|+||++|++.
T Consensus 4 ~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~--~~~~i~l~ik~~g~~T~~L~~~ 81 (105)
T PF08022_consen 4 VRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSP--EDNSITLIIKARGGWTKRLYEH 81 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccC--CCCEEEEEEEeCCCchHHHHHH
Confidence 45678888999999999999876 99999999999999999 5699999999998 4789999999999999999998
Q ss_pred HHhcccCCcCcCcceeEEEeCCCCCC
Q 011270 165 IHAELDSDADQMRCIPVAIEGPYGPA 190 (489)
Q Consensus 165 ~~~~~~~~~~~~~g~~v~v~GPyG~~ 190 (489)
+.+.. .......++.||||||.+
T Consensus 82 ~~~~~---~~~~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 82 LSESP---SKQGNRLRVFIDGPYGAP 104 (105)
T ss_dssp ------------------TTSTTSHH
T ss_pred Hhhhc---ccCCCceEEEEECCCCCC
Confidence 75320 112246789999999964
No 71
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.77 E-value=2.7e-18 Score=176.16 Aligned_cols=176 Identities=16% Similarity=0.160 Sum_probs=126.3
Q ss_pred CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEe----------CCCccHHHHHHHHhcccCCcCcCcce
Q 011270 110 GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC----------DGEWTSSLYQMIHAELDSDADQMRCI 179 (489)
Q Consensus 110 ~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~----------~G~~T~~L~~~~~~~~~~~~~~~~g~ 179 (489)
..++.||||+.+..|. +.|+|||+|+|...++.++++|+. .|..|.+|.+..+ +|+
T Consensus 129 ~~~~~~gq~l~l~~~~----~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~----------~Gd 194 (360)
T cd06199 129 PARLTAEELLDLLRPL----QPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLK----------EGD 194 (360)
T ss_pred CCCCCHHHHHHhCcCC----CCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcCC----------CCC
Confidence 5688999999987442 679999999996556789999874 4888888887654 488
Q ss_pred eEEEeCCC-CCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCc-chhhhHHhHhHHhh
Q 011270 180 PVAIEGPY-GPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLS 257 (489)
Q Consensus 180 ~v~v~GPy-G~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~-~~l~~~~~l~~~l~ 257 (489)
.+.+.+|. |.+..+.....++||||||+|||||+|++++..... ...++.|+|++|+. +|+.+.+++.+...
T Consensus 195 ~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~------~~~~~~L~~G~R~~~~D~~y~~el~~~~~ 268 (360)
T cd06199 195 TVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG------AKGKNWLFFGERHFATDFLYQDELQQWLK 268 (360)
T ss_pred EEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc------CCCcEEEEEcCCCCccchhHHHHHHHHHH
Confidence 99998754 567655445679999999999999999999887542 23679999999997 78888888876542
Q ss_pred hccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCC
Q 011270 258 NQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLE 309 (489)
Q Consensus 258 ~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g 309 (489)
....++++..++|++.....+++.+.+....-.........+|+||++
T Consensus 269 ----~~~~~~~~~a~Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~ 316 (360)
T cd06199 269 ----DGVLTRLDTAFSRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDA 316 (360)
T ss_pred ----cCCCeEEEEEEccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCC
Confidence 235667888899877544444444433221111011223556677666
No 72
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.75 E-value=8.1e-18 Score=182.77 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=117.1
Q ss_pred CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEe----------CCCccHHHHHHHHhcccCCcCcCccee
Q 011270 111 LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC----------DGEWTSSLYQMIHAELDSDADQMRCIP 180 (489)
Q Consensus 111 ~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~----------~G~~T~~L~~~~~~~~~~~~~~~~g~~ 180 (489)
.++.||||+.+..|. +.|||||+|+|...++.++|+|+. .|..|..|.+.++ +|+.
T Consensus 367 ~~~~~gq~v~ll~~~----~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~----------~Gd~ 432 (597)
T TIGR01931 367 ADLDAEQLISLLRPL----TPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLK----------EGDT 432 (597)
T ss_pred CCCCHHHHHHhCccc----CCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCC----------CCCE
Confidence 689999999987653 779999999986567789999985 4899999988655 5889
Q ss_pred EEEeCCC-CCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC-cchhhhHHhHhHHhhh
Q 011270 181 VAIEGPY-GPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS-SQEICLLNSISPLLSN 258 (489)
Q Consensus 181 v~v~GPy-G~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~-~~~l~~~~~l~~~l~~ 258 (489)
|.|.+|. |.|..+.....++||||||+|||||+++++++...+ ...++.|+|++|+ .+|+.+.+++.....+
T Consensus 433 v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~------~~g~~~LffG~R~~~~D~ly~~El~~~~~~ 506 (597)
T TIGR01931 433 VPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDG------AKGKNWLFFGNPHFTTDFLYQVEWQNYLKK 506 (597)
T ss_pred EEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHcc------CCCCEEEEECCCCCCcchhHHHHHHHHHHc
Confidence 9999865 467655445578999999999999999999887653 2367999999999 7788888888765432
Q ss_pred ccCCCcceEEEEEEeCCCCCCcchhhhcc
Q 011270 259 QQSKKWHLTLKVFVTQEEQSSVTVREVLN 287 (489)
Q Consensus 259 ~~~~~~~l~v~~~vTr~~~~~~~~~g~v~ 287 (489)
....++....+|+++....+++.+.
T Consensus 507 ----~~l~~l~~afSRd~~~k~yVqd~l~ 531 (597)
T TIGR01931 507 ----GVLTKMDLAFSRDQAEKIYVQHRIR 531 (597)
T ss_pred ----CCCceeEEEEecCCCCCccHHHHHH
Confidence 2334577788886544344444443
No 73
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.73 E-value=4.4e-17 Score=168.63 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=109.0
Q ss_pred CCcceeeeEEeecCCCCCCeEEEEEEeC-----------CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCC
Q 011270 127 SKFQWHSFSITSSSSVDDQTMSLIVKCD-----------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFL 195 (489)
Q Consensus 127 s~~~~hPFSIas~p~~~~~~l~l~Ik~~-----------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~ 195 (489)
...+.|||||+|+|..+++.++|+|+.. |-.|++|.+ ++ +|+.+.+.||+|.+..+..
T Consensus 160 p~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~~p~g~F~lp~~ 228 (382)
T cd06207 160 PLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAG-LK----------VGQRVTVFIKKSSFKLPKD 228 (382)
T ss_pred cCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhh-cC----------CCCEEEEEEECCcccCCCC
Confidence 3458899999999865568999999853 778888865 33 4899999999998876544
Q ss_pred CCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCc-chhhhHHhHhHHhhhccCCCcceEEEEEEeC
Q 011270 196 RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLSNQQSKKWHLTLKVFVTQ 274 (489)
Q Consensus 196 ~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~-~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr 274 (489)
...++||||||+|||||+|++++......+ .....++.|+|++|+. +|+.+.+++.+... ....+++++..+|
T Consensus 229 ~~~plImIa~GtGIAP~rs~l~~~~~~~~~--~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~----~~~~~~~~~a~Sr 302 (382)
T cd06207 229 PKKPIIMVGPGTGLAPFRAFLQERAALLAQ--GPEIGPVLLYFGCRHEDKDYLYKEELEEYEK----SGVLTTLGTAFSR 302 (382)
T ss_pred CCCCEEEEcCCccHHHHHHHHHHHHHHhhc--CccCCCEEEEECCCCCCccccHHHHHHHHHh----CCCCceEEEEecC
Confidence 467899999999999999999987653111 1134789999999999 88888888876543 2356688888998
Q ss_pred CCCCCcchhhhcc
Q 011270 275 EEQSSVTVREVLN 287 (489)
Q Consensus 275 ~~~~~~~~~g~v~ 287 (489)
+++...++++.+.
T Consensus 303 d~~~~~yVq~~l~ 315 (382)
T cd06207 303 DQPKKVYVQDLIR 315 (382)
T ss_pred CCCCceEhHHHHH
Confidence 7764444444443
No 74
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.73 E-value=3.9e-17 Score=169.07 Aligned_cols=182 Identities=16% Similarity=0.138 Sum_probs=122.4
Q ss_pred cccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEe------------CCCccHHHHHHHHhcccCCcCcCcce
Q 011270 112 KFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC------------DGEWTSSLYQMIHAELDSDADQMRCI 179 (489)
Q Consensus 112 ~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~------------~G~~T~~L~~~~~~~~~~~~~~~~g~ 179 (489)
+...||++.+. |. .+.|+|||+|+|..+++.+++.|+. .|..|.+|.+ ++ +|+
T Consensus 146 ~~~~~~~l~~~-p~---l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd 210 (384)
T cd06206 146 ALPLATFLAML-PP---MRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSS-LR----------PGD 210 (384)
T ss_pred CCCHHHHHHhC-cc---cCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhh-CC----------CCC
Confidence 45568888875 54 3779999999986445666666654 5778888864 33 477
Q ss_pred eEE--EeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCc-chhhhHHhHhHHh
Q 011270 180 PVA--IEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLL 256 (489)
Q Consensus 180 ~v~--v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~-~~l~~~~~l~~~l 256 (489)
.+. +.||+|.+..+....+++||||||+|||||+|++++....... .....++.|+|++|+. +|+.+.+++.+..
T Consensus 211 ~v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~--~~~~~~v~L~~G~R~~~~d~ly~~el~~~~ 288 (384)
T cd06206 211 SIHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQ--GRKLAPALLFFGCRHPDHDDLYRDELEEWE 288 (384)
T ss_pred eEEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhc--CCCcCCEEEEEeCCCCCcccchHHHHHHHH
Confidence 766 5699999876555568999999999999999999988653211 1123579999999999 7898888887654
Q ss_pred hhccCCCcceEEEEEEeCCCCC-CcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHH
Q 011270 257 SNQQSKKWHLTLKVFVTQEEQS-SVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 257 ~~~~~~~~~l~v~~~vTr~~~~-~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav 317 (489)
. ..++++.+.++|++.. ....++.+.+....-.....+...+|+||+.. |+.++
T Consensus 289 ~-----~~~~~l~~a~Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~~--M~~~v 343 (384)
T cd06206 289 A-----AGVVSVRRAYSRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGDGR--MAPGV 343 (384)
T ss_pred H-----CCCeEEEEEecccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECCCc--hHHHH
Confidence 2 2567888888987643 22333333222111000112345667777766 55444
No 75
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.70 E-value=3.5e-16 Score=162.52 Aligned_cols=173 Identities=16% Similarity=0.201 Sum_probs=118.9
Q ss_pred CCcceeeeEEeecCCCCCCeEEEEEEe-----CCCccHHHHHHHHhcccCCcCcCcceeEEEeC-CCCCCCCCCC-CCCe
Q 011270 127 SKFQWHSFSITSSSSVDDQTMSLIVKC-----DGEWTSSLYQMIHAELDSDADQMRCIPVAIEG-PYGPATMDFL-RYDS 199 (489)
Q Consensus 127 s~~~~hPFSIas~p~~~~~~l~l~Ik~-----~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~G-PyG~~~~~~~-~~~~ 199 (489)
...+.|+|||+|+|...++.++++|+. .|-.|.+|.+..+.. ..+|+.+.+.| |.|.|..+.. ...+
T Consensus 170 p~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~------~~~G~~v~i~~~~~g~F~lp~~~~~~p 243 (398)
T cd06203 170 PRLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSA------SSHGVKVPFYLRSSSRFRLPPDDLRRP 243 (398)
T ss_pred ccCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhh------cCCCCEEEEEEecCCCcCCCCcCCCCC
Confidence 345789999999986446889999876 277899998876310 11378899998 6777766544 4578
Q ss_pred EEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCc-chhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCC
Q 011270 200 LLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQS 278 (489)
Q Consensus 200 vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~-~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~ 278 (489)
+||||||+|||||++++++..............++.|+|++|+. +|+.+.+++.+... .....++.+.++|+++.
T Consensus 244 iImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~----~~~~~~~~~a~SRd~~~ 319 (398)
T cd06203 244 IIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLE----EGILTRLIVAFSRDEND 319 (398)
T ss_pred EEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHH----cCCCceEEEEECCCCCC
Confidence 99999999999999999987753111111234689999999999 78888888876543 23455688889998764
Q ss_pred CcchhhhcchhhhhHhhh---c--CCCCceEEecCCc
Q 011270 279 SVTVREVLNDLSLVRAVR---F--GTQSNYAVNGLES 310 (489)
Q Consensus 279 ~~~~~g~v~~~~~~~~~~---~--~~~~~~~v~g~g~ 310 (489)
+ +.++++++........ . .....+|+||+..
T Consensus 320 ~-g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~ 355 (398)
T cd06203 320 G-STPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAK 355 (398)
T ss_pred C-CCceecchHHHhCHHHHHHHHhcCCcEEEEECCcc
Confidence 3 3456776544332211 1 1234566666543
No 76
>PRK06214 sulfite reductase; Provisional
Probab=99.69 E-value=5.5e-16 Score=164.61 Aligned_cols=163 Identities=17% Similarity=0.211 Sum_probs=111.1
Q ss_pred CCcceeeeEEeecCCCCCCeEEEEEEeC----------CCccHHHHHHHHhcccCCcCcCcceeEEE--eCCCCCCCCCC
Q 011270 127 SKFQWHSFSITSSSSVDDQTMSLIVKCD----------GEWTSSLYQMIHAELDSDADQMRCIPVAI--EGPYGPATMDF 194 (489)
Q Consensus 127 s~~~~hPFSIas~p~~~~~~l~l~Ik~~----------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v--~GPyG~~~~~~ 194 (489)
.+.+.|+|||+|+|..+++.++|+||.. |..|.+|.+.++ +|+.+.| .+|+| |..+.
T Consensus 312 p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~----------~Gd~V~v~i~~~~g-F~lp~ 380 (530)
T PRK06214 312 DPLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLA----------PGTRVRVYVQKAHG-FALPA 380 (530)
T ss_pred CCCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcCC----------CCCEEEEEecCCCC-CccCC
Confidence 3458899999999865578999999753 778888886554 4676665 55666 66544
Q ss_pred CCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC-cchhhhHHhHhHHhhhccCCCcceEEEEEEe
Q 011270 195 LRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS-SQEICLLNSISPLLSNQQSKKWHLTLKVFVT 273 (489)
Q Consensus 195 ~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~-~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vT 273 (489)
....++||||+|+|||||+|++++..... ...++.|+|++|+ .+|+.|.+++.+... .....++.+..+
T Consensus 381 ~~~~PiImIg~GTGIAPfrsfLq~r~~~~------~~g~~~LffG~R~~~~D~ly~dEL~~l~~----~g~l~~l~~afS 450 (530)
T PRK06214 381 DPNTPIIMVGPGTGIAPFRAFLHERAATK------APGRNWLFFGHQRSATDFFYEDELNGLKA----AGVLTRLSLAWS 450 (530)
T ss_pred CCCCCEEEEcCCeeHHHHHHHHHHHHHhc------CCCCeEEEEEecCChhhhHHHHHHHHHHH----hCCceEEEEEEe
Confidence 44578999999999999999999876532 2367899999965 668888888866543 224456777888
Q ss_pred CCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCc
Q 011270 274 QEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLES 310 (489)
Q Consensus 274 r~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~ 310 (489)
|+++...++++.+.+....-.....+...+|+||+..
T Consensus 451 Rd~~~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~ 487 (530)
T PRK06214 451 RDGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAK 487 (530)
T ss_pred cCCCCCCchhhHHHHHHHHHHhhhcCCcEEEEeCChH
Confidence 8775555555555433211111122334455555543
No 77
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.68 E-value=3e-16 Score=169.89 Aligned_cols=176 Identities=14% Similarity=0.143 Sum_probs=127.5
Q ss_pred CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEe----------CCCccHHHHHHHHhcccCCcCcCccee
Q 011270 111 LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC----------DGEWTSSLYQMIHAELDSDADQMRCIP 180 (489)
Q Consensus 111 ~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~----------~G~~T~~L~~~~~~~~~~~~~~~~g~~ 180 (489)
.++.||||+.+..|- +.|+|||+|+|...++.+.+.|+. .|..|..|.+.++ +|++
T Consensus 370 ~~~~~~q~l~ll~~l----~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~----------~Gd~ 435 (600)
T PRK10953 370 AQLDAEQLIGLLRPL----TPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRLE----------EEGE 435 (600)
T ss_pred CCCCHHHHHHhCCCC----CCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCC----------CCCE
Confidence 478999999887553 679999999986556778877632 4667777876554 5889
Q ss_pred EEEeCCCC-CCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC-cchhhhHHhHhHHhhh
Q 011270 181 VAIEGPYG-PATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS-SQEICLLNSISPLLSN 258 (489)
Q Consensus 181 v~v~GPyG-~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~-~~~l~~~~~l~~~l~~ 258 (489)
+.|.||.| .|..+.....++||||+|+|||||++++++....+ ...++.|+|++|+ ..|+.|.+|+.....+
T Consensus 436 v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~------~~~~~~LffG~R~~~~D~lY~~El~~~~~~ 509 (600)
T PRK10953 436 VRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG------APGKNWLFFGNPHFTEDFLYQVEWQRYVKE 509 (600)
T ss_pred EEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC------CCCCeEEEeeccCCccchhHHHHHHHHHHc
Confidence 99999876 56655455679999999999999999999887642 2467999999998 7788898988776532
Q ss_pred ccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCc
Q 011270 259 QQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLES 310 (489)
Q Consensus 259 ~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~ 310 (489)
....++....+|+++...++++.+.+....-..+..+...+|+||+.+
T Consensus 510 ----g~l~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~ 557 (600)
T PRK10953 510 ----GLLTRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDAN 557 (600)
T ss_pred ----CCcceEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCc
Confidence 223357788999876666666666554332222233345667777654
No 78
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.66 E-value=1.6e-15 Score=158.52 Aligned_cols=177 Identities=16% Similarity=0.132 Sum_probs=119.1
Q ss_pred CcceeeeEEeecCCCCCCeEEEEEEeC-----------CCccHHHHHHHHhcc----------cCCcCcCcceeEEEeCC
Q 011270 128 KFQWHSFSITSSSSVDDQTMSLIVKCD-----------GEWTSSLYQMIHAEL----------DSDADQMRCIPVAIEGP 186 (489)
Q Consensus 128 ~~~~hPFSIas~p~~~~~~l~l~Ik~~-----------G~~T~~L~~~~~~~~----------~~~~~~~~g~~v~v~GP 186 (489)
..+.|+|||+|+|..+++.++++|+.. |-.|.+|.+..+... ....+..+|+.+.+..|
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~ 254 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVR 254 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEe
Confidence 458899999999976678899988742 778888988664110 00011125788999999
Q ss_pred CCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCc-chhhhHHhHhHHhhhccCCCcc
Q 011270 187 YGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLSNQQSKKWH 265 (489)
Q Consensus 187 yG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~-~~l~~~~~l~~~l~~~~~~~~~ 265 (489)
.|.|..+.....++||||||+|||||+|++++.......+ ....++.|+|++|+. +|+.+.+++.++.. ...+
T Consensus 255 ~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~--~~~~~v~L~~G~R~~~~d~ly~~el~~~~~----~~~~ 328 (416)
T cd06204 255 RSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESG--KKVGPTLLFFGCRHPDEDFIYKDELEEYAK----LGGL 328 (416)
T ss_pred cCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhcc--CccCCEEEEEcCCCCCcccchHHHHHHHHH----cCCc
Confidence 9988765445679999999999999999999876432111 123689999999998 78888888876543 2356
Q ss_pred eEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCc
Q 011270 266 LTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLES 310 (489)
Q Consensus 266 l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~ 310 (489)
+++.+.++|+++....+++.+.+....-.....+...+|+||+++
T Consensus 329 ~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~ 373 (416)
T cd06204 329 LELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAK 373 (416)
T ss_pred eEEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcc
Confidence 788888898765444555555432111100112234566666655
No 79
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.65 E-value=7.5e-16 Score=145.76 Aligned_cols=195 Identities=14% Similarity=0.231 Sum_probs=145.9
Q ss_pred EEEeecCCCCcccCCeEEEEecCCCC--------------Cc---------------ceeeeEEeecCCCCCCeEEEEEE
Q 011270 102 ELILPKHAGLKFTPTSVIFMKIPSIS--------------KF---------------QWHSFSITSSSSVDDQTMSLIVK 152 (489)
Q Consensus 102 ~l~~~~~~~~~~~pGQ~v~l~~p~~s--------------~~---------------~~hPFSIas~p~~~~~~l~l~Ik 152 (489)
.|.++..+...|+||.|+.|.+|.-. .| ..+.||++|.|. +.+.+.+-||
T Consensus 153 ~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYSmAsYPe-E~giI~~NvR 231 (410)
T COG2871 153 KLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYSMASYPE-EKGIIKLNVR 231 (410)
T ss_pred eeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhhhhcChh-hcCeEEEEEE
Confidence 34444445688999999999987420 01 127899999986 6778889888
Q ss_pred e-----------CCCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHH
Q 011270 153 C-----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIAS 221 (489)
Q Consensus 153 ~-----------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~ 221 (489)
. -|-.+++++++. +|++|.|.||||.+.. -+....+|+|+||.|.+|+.|.+-|++.
T Consensus 232 IAtPPp~~~~~PpG~mSSyi~sLK-----------pGDKvtisGPfGEfFa-KdtdaemvFigGGAGmapmRSHIfDqL~ 299 (410)
T COG2871 232 IATPPPRNPDAPPGQMSSYIWSLK-----------PGDKVTISGPFGEFFA-KDTDAEMVFIGGGAGMAPMRSHIFDQLK 299 (410)
T ss_pred eccCCCCCCCCCccceeeeEEeec-----------CCCeEEEeccchhhhh-ccCCCceEEEecCcCcCchHHHHHHHHH
Confidence 4 244555555543 5999999999998754 3455789999999999999999998887
Q ss_pred hhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCC--CCCcchhhhcchhhhhHhhhcCC
Q 011270 222 AQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE--QSSVTVREVLNDLSLVRAVRFGT 299 (489)
Q Consensus 222 ~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~--~~~~~~~g~v~~~~~~~~~~~~~ 299 (489)
+. ...+++.+.|++|+.++..|.+++.++.. +.+|+..++.++++. ++|.+..|++.....+..+...+
T Consensus 300 rl-----hSkRkis~WYGARS~rE~fY~Ed~d~L~a----e~pNF~wH~aLSdplpEDnW~g~TgFihnv~~en~Lk~h~ 370 (410)
T COG2871 300 RL-----HSKRKISFWYGARSLREMFYQEDFDQLQA----ENPNFHWHLALSDPLPEDNWDGYTGFIHNVLYENYLKDHE 370 (410)
T ss_pred hh-----cccceeeeeeccchHHHhHHHHHHHHHHh----hCCCcEEEEEecCCCCcCCcccchhHHHHHHHhhhhhcCC
Confidence 64 24589999999999999999988876543 447999999999875 46778889998887777765544
Q ss_pred -CCceEEecCCcHHHHHHHH
Q 011270 300 -QSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 300 -~~~~~v~g~g~~~~~aav~ 318 (489)
...+..|.||++++-++++
T Consensus 371 aPEDceyYmCGPp~mNasvi 390 (410)
T COG2871 371 APEDCEYYMCGPPLMNASVI 390 (410)
T ss_pred CchheeEEeeCcchhhHHHH
Confidence 3444445666667767664
No 80
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.59 E-value=2.2e-14 Score=149.48 Aligned_cols=169 Identities=16% Similarity=0.087 Sum_probs=111.2
Q ss_pred cceeeeEEeecCCCCCCeEEEEEEe-------------CCCccHHHHHHHHhcccCCcCcCcceeEEEeCCC-CCCCCCC
Q 011270 129 FQWHSFSITSSSSVDDQTMSLIVKC-------------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPY-GPATMDF 194 (489)
Q Consensus 129 ~~~hPFSIas~p~~~~~~l~l~Ik~-------------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPy-G~~~~~~ 194 (489)
.+.|+|||+|+|...++.+++.|+. .|-.|++|.++ + +|+.+.+.+|. |.+..+.
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l-~----------~Gd~v~v~~~~~~~F~lp~ 243 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGL-T----------PGDTVPCFVRSAPSFHLPE 243 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhC-C----------CCCEEEEEEeeCCccCCCC
Confidence 4789999999986456677777654 37788888543 2 48888887654 3565544
Q ss_pred CCCCeEEEEEeCCChhhHHHHHHHHHHhhc--ccCCCCCceEEEEEEeCCc-chhhhHHhHhHHhhhccCCCcceEEEEE
Q 011270 195 LRYDSLLLVAGGIGITPFLSILQEIASAQS--NRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLSNQQSKKWHLTLKVF 271 (489)
Q Consensus 195 ~~~~~vvlIAGGiGITP~lsil~~l~~~~~--~~~~~~~~~i~lvw~~r~~-~~l~~~~~l~~~l~~~~~~~~~l~v~~~ 271 (489)
....++||||+|+|||||+|++++...... ........++.|+|++|+. +|..|.+++.+... .....++++.
T Consensus 244 ~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~----~~~~~~~~~a 319 (406)
T cd06202 244 DPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKN----KGVLTEVYTA 319 (406)
T ss_pred CCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHH----cCCCceEEEE
Confidence 455799999999999999999998653210 0111234789999999999 78888888866542 2345568888
Q ss_pred EeCCCCCCcchhhhcchhhhhHhhh---c--CCCCceEEecCCcHHHHHHH
Q 011270 272 VTQEEQSSVTVREVLNDLSLVRAVR---F--GTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 272 vTr~~~~~~~~~g~v~~~~~~~~~~---~--~~~~~~~v~g~g~~~~~aav 317 (489)
++|+++.. ++++++........ . .....+|+||+. .|+.++
T Consensus 320 ~SR~~~~~---k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~--~M~~~V 365 (406)
T cd06202 320 LSREPGKP---KTYVQDLLKEQAESVYDALVREGGHIYVCGDV--TMAEDV 365 (406)
T ss_pred EcCCCCCC---CeehhhHHHHhHHHHHHHHHhCCCEEEEeCCC--chHHHH
Confidence 99876421 34454433222111 1 234567777776 355544
No 81
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.43 E-value=9.5e-13 Score=111.30 Aligned_cols=104 Identities=21% Similarity=0.321 Sum_probs=74.7
Q ss_pred EEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcc
Q 011270 202 LVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVT 281 (489)
Q Consensus 202 lIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~ 281 (489)
|||||+||||++|++++++.+. ...+++|+|++|+.+++.+.+++.+...... .++.+... .+.+..+.+
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~------~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~---~~~~~~~~-~~~~~~~~~ 70 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN------DNRKVTLFYGARTPEDLLFRDELEALAQEYP---NRFHVVYV-SSPDDGWDG 70 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT------CTSEEEEEEEESSGGGSTTHHHHHHHHHHST---TCEEEEEE-TTTTSSTTS
T ss_pred CeecceeHHHHHHHHHHHHHhC------CCCCEEEEEEEcccccccchhHHHHHHhhcc---cccccccc-cccccccCC
Confidence 7999999999999999999762 4589999999999999999999877654321 23444433 555566777
Q ss_pred hhhhcchhhhhHhhh---cCCCCceEEecCCcHHHHHHH
Q 011270 282 VREVLNDLSLVRAVR---FGTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 282 ~~g~v~~~~~~~~~~---~~~~~~~~v~g~g~~~~~aav 317 (489)
.+|++++....+... ..+...+++|| |+.|+.++
T Consensus 71 ~~g~v~~~~~~~~~~~~~~~~~~~v~iCG--p~~m~~~v 107 (109)
T PF00175_consen 71 FKGRVTDLLLEDLLPEKIDPDDTHVYICG--PPPMMKAV 107 (109)
T ss_dssp EESSHHHHHHHHHHHHHHCTTTEEEEEEE--EHHHHHHH
T ss_pred ceeehhHHHHHhhcccccCCCCCEEEEEC--CHHHHHHh
Confidence 889998877666554 23334455555 66666654
No 82
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.34 E-value=2.1e-11 Score=130.76 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=121.2
Q ss_pred cceeeeEEeecCCCCCCeEEEEEEe----------CCCccHHHHHHHHhcccCCcCcCcceeEEEeCCCC-CCCCCCCCC
Q 011270 129 FQWHSFSITSSSSVDDQTMSLIVKC----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYG-PATMDFLRY 197 (489)
Q Consensus 129 ~~~hPFSIas~p~~~~~~l~l~Ik~----------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG-~~~~~~~~~ 197 (489)
+..|-|||+|+|...++.++++|.. .|..|..|.+... .|+.+.|-..-+ ++..+.++.
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~----------~g~~i~v~v~~n~nf~lp~~~~ 440 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLE----------EGDTIPVFVQPNKNFRLPEDPE 440 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhc----------CCCeEEEEeccCCccccCCCCC
Confidence 3569999999998777777777743 4667777877765 366666666555 555554455
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC-cchhhhHHhHhHHhhhccCCCcceEEEEEEeCCC
Q 011270 198 DSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS-SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE 276 (489)
Q Consensus 198 ~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~-~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~ 276 (489)
.+++|||.|+||+||++++++...++ ...+..|++++|+ .+|+.|.+|+.+... .....++....+|++
T Consensus 441 ~PiIMIG~GTGIAPFRafvq~r~~~~------~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~----~G~~~~l~~AfSRdq 510 (587)
T COG0369 441 TPIIMIGPGTGIAPFRAFVQERAANG------AEGKNWLFFGCRHFTEDFLYQEEWEEYLK----DGVLTRLDLAFSRDQ 510 (587)
T ss_pred CceEEEcCCCCchhHHHHHHHHHhcc------ccCceEEEecCCCCccchhhHHHHHHHHh----cCCceeEEEEEeecC
Confidence 89999999999999999999988764 2347999999999 778888888876543 234678999999999
Q ss_pred CCCcchhhhcchhhhhHhhhcCCCCceEEecCC
Q 011270 277 QSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLE 309 (489)
Q Consensus 277 ~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g 309 (489)
+...++++++.+...+-..+..+...+|+||.+
T Consensus 511 ~~KiYVQd~lre~~del~~~l~~ga~~YVCGd~ 543 (587)
T COG0369 511 EEKIYVQDRLREQADELWEWLEEGAHIYVCGDA 543 (587)
T ss_pred CCCccHHHHHHHhHHHHHHHHHCCCEEEEeCCC
Confidence 888888888887765555555555666666633
No 83
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.34 E-value=1.9e-12 Score=107.74 Aligned_cols=91 Identities=21% Similarity=0.287 Sum_probs=74.8
Q ss_pred eeEEEEEEeCCCeEEEEeecCC---CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHH
Q 011270 88 TCILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLY 162 (489)
Q Consensus 88 ~~vv~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~ 162 (489)
+.+++++.+++++..+++..+. .+.|.||||+.|.++..+...+||||+++.|. +++.++|+||.. |..|+.|.
T Consensus 2 ~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 2 AKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEECTTSHHHHHHH
T ss_pred EEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEeccCCHHHHHHH
Confidence 5688999999999888886552 36799999999999955556889999999985 677999999996 88899996
Q ss_pred HHHHhcccCCcCcCcceeEEEeCCCCCC
Q 011270 163 QMIHAELDSDADQMRCIPVAIEGPYGPA 190 (489)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~v~v~GPyG~~ 190 (489)
+ ++ +|+.+.++||+|.+
T Consensus 81 ~-l~----------~Gd~v~i~gP~G~f 97 (99)
T PF00970_consen 81 Q-LK----------PGDEVEIRGPYGNF 97 (99)
T ss_dssp T-SC----------TTSEEEEEEEESSE
T ss_pred h-CC----------CCCEEEEEEccccc
Confidence 5 43 59999999999986
No 84
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.33 E-value=2.1e-11 Score=135.68 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=95.8
Q ss_pred ceeEEEEEEeCCCeEEEEeecCC-CCcccCCeEEEEecCCCC--Cc-ceeeeEEeecCCCCCCeEEEEEEeCCCccHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSIS--KF-QWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLY 162 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~s--~~-~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~L~ 162 (489)
..+|++.+.++++++++++..|. .-.++||||+.|+.++.+ .+ ..+||||++.+. +.+.+++.++..|..|+.|.
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~-e~g~It~i~rvVGkgT~~Ls 870 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDV-EKGLISFIVFEVGKSTSLCK 870 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCC-CCCEEEEEEEEEChHHHHHh
Confidence 46789999999999999997765 346899999999986432 22 457999998864 56789999999999999998
Q ss_pred HHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHh
Q 011270 163 QMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASA 222 (489)
Q Consensus 163 ~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~ 222 (489)
++. +|+.+.+.||+|.+.. ...++++++||||+|++| +.+.|.+.
T Consensus 871 ~l~-----------~Gd~v~v~GPLG~pF~-i~~~k~vLLVgGGVGiAp---Lak~Lk~~ 915 (1028)
T PRK06567 871 TLS-----------ENEKVVLMGPTGSPLE-IPQNKKIVIVDFEVGNIG---LLKVLKEN 915 (1028)
T ss_pred cCC-----------CCCEEEEEcccCCCCC-CCCCCeEEEEEccccHHH---HHHHHHHC
Confidence 754 4889999999998653 334679999999999997 44666543
No 85
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=99.07 E-value=1.2e-09 Score=117.36 Aligned_cols=167 Identities=19% Similarity=0.172 Sum_probs=104.9
Q ss_pred CcceeeeEEeecCCCCCCeEEEEEEe------C------CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCC--CC
Q 011270 128 KFQWHSFSITSSSSVDDQTMSLIVKC------D------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPAT--MD 193 (489)
Q Consensus 128 ~~~~hPFSIas~p~~~~~~l~l~Ik~------~------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~--~~ 193 (489)
.++.|+|||+|+|....+.+.+++-. . |-.|..|.++.. ++.+-.-+|-+.+. ++
T Consensus 419 ~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~-----------~~~~~~~~~~~~s~frlp 487 (645)
T KOG1158|consen 419 RLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKP-----------GEKVPNPVPVGKSMFRLP 487 (645)
T ss_pred cccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCC-----------ccccCcceeecccceecC
Confidence 45889999999987666766665532 2 445666666432 33322223334333 23
Q ss_pred CCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchh-hhHHhHhHHhhhccCCCcceEEEEEE
Q 011270 194 FLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEI-CLLNSISPLLSNQQSKKWHLTLKVFV 272 (489)
Q Consensus 194 ~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l-~~~~~l~~~l~~~~~~~~~l~v~~~v 272 (489)
.+...+++|||-|+|||||++++++.......+...... +.|+++||+.++. .|.+|+.... ......++...+
T Consensus 488 ~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~----~~~~l~~l~~A~ 562 (645)
T KOG1158|consen 488 SDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYK----KAGILTRLDVAF 562 (645)
T ss_pred CCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHH----hcCcchhheeee
Confidence 345579999999999999999999988764332222334 8999999999887 5556655432 133566788999
Q ss_pred eCCC-CCCcchhhhcchhhhhHhhhc-CCCCceEEecCCc
Q 011270 273 TQEE-QSSVTVREVLNDLSLVRAVRF-GTQSNYAVNGLES 310 (489)
Q Consensus 273 Tr~~-~~~~~~~g~v~~~~~~~~~~~-~~~~~~~v~g~g~ 310 (489)
+|++ +...+++..+.+....-..-. .+....|+||...
T Consensus 563 SReq~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~ 602 (645)
T KOG1158|consen 563 SREQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAK 602 (645)
T ss_pred eccCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCc
Confidence 9998 555566666654432222111 2245566666554
No 86
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.05 E-value=1.4e-09 Score=102.90 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=87.5
Q ss_pred eeEEEEEEeCCCeEEEEee-cCCC---CcccCCeEEEEec--CCCCCcceeeeEEeecCCCCCCeEEEEEEe--CCCccH
Q 011270 88 TCILSARVFPSKAIELILP-KHAG---LKFTPTSVIFMKI--PSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTS 159 (489)
Q Consensus 88 ~~vv~~~~~~~~~~~l~~~-~~~~---~~~~pGQ~v~l~~--p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~--~G~~T~ 159 (489)
..+......++|+.++.+. +.+. ....|||||.++. |..+.-.-+-||.+.....-.+.+.+.||. .|-.++
T Consensus 152 F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~G~VS~ 231 (385)
T KOG3378|consen 152 FKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAGGVVSN 231 (385)
T ss_pred eeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeehhchhhHH
Confidence 4555555667899998883 3333 3578999999976 333321123344443332246789999987 455677
Q ss_pred HHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCC---CCCCCeEEEEEeCCChhhHHHHHHHHHHh
Q 011270 160 SLYQMIHAELDSDADQMRCIPVAIEGPYGPATMD---FLRYDSLLLVAGGIGITPFLSILQEIASA 222 (489)
Q Consensus 160 ~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~---~~~~~~vvlIAGGiGITP~lsil~~l~~~ 222 (489)
.+++.++ .||.+.+..|-|.|... .....++++.|||+||||+++|++..+..
T Consensus 232 ~~H~~~K----------VGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C 287 (385)
T KOG3378|consen 232 FVHDNLK----------VGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLC 287 (385)
T ss_pred Hhhcccc----------ccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHhc
Confidence 7777665 79999999999998642 22347899999999999999999987754
No 87
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=98.69 E-value=6.6e-08 Score=98.63 Aligned_cols=162 Identities=17% Similarity=0.211 Sum_probs=102.2
Q ss_pred eEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEE-----------eCCCccHHHHHHHHhcccCCcCcCcceeEEEeC
Q 011270 117 SVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVK-----------CDGEWTSSLYQMIHAELDSDADQMRCIPVAIEG 185 (489)
Q Consensus 117 Q~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik-----------~~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~G 185 (489)
+|++=.+|.+ ..|.|||+|.|. ...++++|. +.|-.|++|.++.. |+.+.+.=
T Consensus 357 ~yl~d~~P~I---rPR~fSIas~~~--~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~-----------g~~i~~~v 420 (574)
T KOG1159|consen 357 DYLLDLLPVI---RPRAFSIASSPG--AHHLELLVAIVEYKTILKEPRRGLCSNWLASLKP-----------GDEIPIKV 420 (574)
T ss_pred HHHHHhcccc---ccceeeeccCCC--CCceeEEEEEEEEeeeccccccchhHHHHhhcCC-----------CCeEEEEE
Confidence 3444445666 569999999985 344776552 26777888776543 44444433
Q ss_pred CCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcc-hhhhHHhHhHHhhhccCCCc
Q 011270 186 PYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ-EICLLNSISPLLSNQQSKKW 264 (489)
Q Consensus 186 PyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~-~l~~~~~l~~~l~~~~~~~~ 264 (489)
--|....+.....+++|||-|+||||+++++++-..++ .....|+++||+.+ |+.|.+++.+. .
T Consensus 421 ~~g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q~-------~~~~~lFfGCR~K~~Df~y~~eW~~~--------~ 485 (574)
T KOG1159|consen 421 RPGTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQG-------DKENVLFFGCRNKDKDFLYEDEWTEL--------N 485 (574)
T ss_pred ecCccccCCCCCCCeEEEcCCCCcccHHHHHHHHHhhc-------cCCceEEEecccCCccccccchhhhh--------h
Confidence 33554434444679999999999999999999877542 23448888999875 45555555432 2
Q ss_pred ceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcC-CCCceEEecCC
Q 011270 265 HLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFG-TQSNYAVNGLE 309 (489)
Q Consensus 265 ~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~~v~g~g 309 (489)
....+...+|+++...+++..+.+.......-.. ....++++|..
T Consensus 486 ~~~~~~AFSRDqe~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS 531 (574)
T KOG1159|consen 486 KRAFHTAFSRDQEQKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSS 531 (574)
T ss_pred cchhhhhcccccccceeHHHHHHHhhHHHHHHHhccCCEEEEecCC
Confidence 3334457889988777777777655443332222 23445555544
No 88
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=98.02 E-value=8.5e-06 Score=70.31 Aligned_cols=47 Identities=45% Similarity=0.785 Sum_probs=41.7
Q ss_pred cCchhhhhHHHHHHHHHHHHhchhHHH-hhchhhHHHHhHHHHHHHHH
Q 011270 7 TGRIYLAGEIALVTGLVMWITSLPQIR-RKKFEFFYYTHHLYIIFLIF 53 (489)
Q Consensus 7 ~~~~~~~G~ia~~~~~~m~~~S~~~iR-r~~ye~F~~~H~l~~~~~v~ 53 (489)
.+..+.+|.++++++++|+++|.+++| |+.||.|+++|+++++++++
T Consensus 76 ~~~~~~~G~~a~~~l~~l~~tS~~~~R~r~~ye~f~~~H~~~~~~~~l 123 (125)
T PF01794_consen 76 TGPYNLTGIIALLLLLILAVTSFPWIRRRRNYEIFYYLHILFYIAFLL 123 (125)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 455788999999999999999999999 88999999999998765543
No 89
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.032 Score=54.26 Aligned_cols=139 Identities=12% Similarity=0.166 Sum_probs=95.4
Q ss_pred CceeEEEEEEeCCCeEEEEeecCCCCcc---c-CCeEEEEecCCCCC--------------------cceeeeEEeecCC
Q 011270 86 PETCILSARVFPSKAIELILPKHAGLKF---T-PTSVIFMKIPSISK--------------------FQWHSFSITSSSS 141 (489)
Q Consensus 86 ~~~~vv~~~~~~~~~~~l~~~~~~~~~~---~-pGQ~v~l~~p~~s~--------------------~~~hPFSIas~p~ 141 (489)
+.+.+..++.++++.+++++..+....+ . .+||+.|.+|..+. ...|+|||-+...
T Consensus 18 ~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~d~ 97 (265)
T COG2375 18 HEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAVDA 97 (265)
T ss_pred eEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeeecc
Confidence 3567888899999999999987654333 3 44599999975321 2368999976532
Q ss_pred CCCCe--EEEEEE-eCCCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHH
Q 011270 142 VDDQT--MSLIVK-CDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQE 218 (489)
Q Consensus 142 ~~~~~--l~l~Ik-~~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~ 218 (489)
+.++ +.|++- ..|..++.-.+ ++ +|+++.+.||-|... ....++.++|++==+++..+..||++
T Consensus 98 -~~~e~~vDfVlH~~~gpas~WA~~-a~----------~GD~l~i~GP~g~~~-p~~~~~~~lLigDetAlPAIa~iLE~ 164 (265)
T COG2375 98 -AAGELDVDFVLHGEGGPASRWART-AQ----------PGDTLTIMGPRGSLV-PPEAADWYLLIGDETALPAIARILET 164 (265)
T ss_pred -cccEEEEEEEEcCCCCcchhhHhh-CC----------CCCEEEEeCCCCCCC-CCCCcceEEEeccccchHHHHHHHHh
Confidence 3333 344444 34444443332 22 699999999999854 34678999999999999999999998
Q ss_pred HHHhhcccCCCCCceEEEEEEeCCcchh
Q 011270 219 IASAQSNRKYRFPSKVQLIYVIKSSQEI 246 (489)
Q Consensus 219 l~~~~~~~~~~~~~~i~lvw~~r~~~~l 246 (489)
+-.. .+.+.+-.+++.++.
T Consensus 165 lp~~---------~~~~a~lev~d~ad~ 183 (265)
T COG2375 165 LPAD---------TPAEAFLEVDDAADR 183 (265)
T ss_pred CCCC---------CceEEEEEeCChHHh
Confidence 8643 334555566665543
No 90
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=95.96 E-value=0.037 Score=47.39 Aligned_cols=90 Identities=10% Similarity=0.130 Sum_probs=51.2
Q ss_pred eEEEEEEeCCCeEEEEeecCCC--Cc-ccCCeEEEEecCCCCCc---------------------ceeeeEEeecCCCCC
Q 011270 89 CILSARVFPSKAIELILPKHAG--LK-FTPTSVIFMKIPSISKF---------------------QWHSFSITSSSSVDD 144 (489)
Q Consensus 89 ~vv~~~~~~~~~~~l~~~~~~~--~~-~~pGQ~v~l~~p~~s~~---------------------~~hPFSIas~p~~~~ 144 (489)
+|++++.++++..++++..+.- +. ..||||+.|.+|..+.- ..|.|||-+... +.
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~-~~ 79 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDP-ET 79 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEET-T-
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcC-CC
Confidence 3678889999999999977642 22 46999999999854321 468999988743 55
Q ss_pred CeEEEEEEeC---CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCC
Q 011270 145 QTMSLIVKCD---GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPA 190 (489)
Q Consensus 145 ~~l~l~Ik~~---G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~ 190 (489)
+++.|-+-.. |..++...+ ++ +|+.+.|-||-|+|
T Consensus 80 ~~l~iDfv~Hg~~Gpas~WA~~-A~----------pGd~v~v~gP~g~~ 117 (117)
T PF08021_consen 80 GELDIDFVLHGDEGPASRWARS-AR----------PGDRVGVTGPRGSF 117 (117)
T ss_dssp -EEEEEEE--SS--HHHHHHHH-------------TT-EEEEEEEE---
T ss_pred CEEEEEEEECCCCCchHHHHhh-CC----------CCCEEEEeCCCCCC
Confidence 6777655543 334444433 33 59999999998764
No 91
>COG2717 Predicted membrane protein [Function unknown]
Probab=95.38 E-value=0.11 Score=48.73 Aligned_cols=75 Identities=17% Similarity=0.091 Sum_probs=56.8
Q ss_pred chhhhhHHHHHHHHHHHHhchhHHHhhchhhHHHHhHHHHHHHHHHHHhcCch-----hhHHHHHH-HHHHHHHHHHHHh
Q 011270 9 RIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDR-----HFYMVFGG-IFLFGLDKLLRFI 82 (489)
Q Consensus 9 ~~~~~G~ia~~~~~~m~~~S~~~iRr~~ye~F~~~H~l~~~~~v~~~~H~~~~-----~~~~~~~~-~~l~~~dr~~R~~ 82 (489)
++...|.++++.++.|.+||..+.||+.=..|..+|.+..+++++..+|.... ..++++.. .+.+.+.|+.+..
T Consensus 115 pyitiG~iaflll~pLalTS~k~~~rrlG~rW~~LHrLvYl~~~L~~lH~~~s~K~~~~~~vlY~ii~~~lll~R~~k~~ 194 (209)
T COG2717 115 PYITIGMIAFLLLIPLALTSFKWVRRRLGKRWKKLHRLVYLALILGALHYLWSVKIDMPEPVLYAIIFAVLLLLRVTKTR 194 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999977999999999999999999996321 11222221 3456677777665
Q ss_pred h
Q 011270 83 Q 83 (489)
Q Consensus 83 r 83 (489)
+
T Consensus 195 ~ 195 (209)
T COG2717 195 S 195 (209)
T ss_pred H
Confidence 3
No 92
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=93.58 E-value=0.47 Score=44.84 Aligned_cols=73 Identities=16% Similarity=0.103 Sum_probs=51.8
Q ss_pred chhhhhHHHHHHHHHHHHhchhHHHhh-chhhHHHHhHHHHHHHHHHHHhcC-----c--hhhHHHHHHHHHHHHHHHHH
Q 011270 9 RIYLAGEIALVTGLVMWITSLPQIRRK-KFEFFYYTHHLYIIFLIFFLFHAG-----D--RHFYMVFGGIFLFGLDKLLR 80 (489)
Q Consensus 9 ~~~~~G~ia~~~~~~m~~~S~~~iRr~-~ye~F~~~H~l~~~~~v~~~~H~~-----~--~~~~~~~~~~~l~~~dr~~R 80 (489)
.+...|.++++.++.|.+||..+.||+ .| .|..+|.+..+++++..+|.. + ....|... ++++..-|+.+
T Consensus 115 ~~i~~G~ia~~lLl~LaiTS~~~~~rrLg~-~Wk~LH~l~Y~a~~L~~~H~~~~~k~~~~~~~~y~~~-~~~ll~~R~~~ 192 (205)
T PRK05419 115 PYITVGMAAFLILLPLALTSTRASQRRLGK-RWQKLHRLVYLIAILAPLHYLWSVKSDSPEPLIYAAI-VAVLLALRLKK 192 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHH-HHHHHHHHHHH
Confidence 356779999999999999999998886 56 899999997777778889932 1 11122322 23444557776
Q ss_pred Hhh
Q 011270 81 FIQ 83 (489)
Q Consensus 81 ~~r 83 (489)
..+
T Consensus 193 ~~~ 195 (205)
T PRK05419 193 LRR 195 (205)
T ss_pred HHH
Confidence 653
No 93
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=93.05 E-value=0.077 Score=51.18 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=21.4
Q ss_pred ccEEEEEeCCcchhHHHHHHhhhhc
Q 011270 442 SDIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
++.-||+|||+.|.+++++.+++..
T Consensus 200 ~~~~vyiCGp~~m~~~~~~~l~~~G 224 (241)
T cd06195 200 ETSHVMLCGNPQMIDDTQELLKEKG 224 (241)
T ss_pred ccCEEEEeCCHHHHHHHHHHHHHcC
Confidence 3456999999999999999998854
No 94
>PRK08051 fre FMN reductase; Validated
Probab=92.17 E-value=0.098 Score=50.26 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=19.6
Q ss_pred EEEEEeCCcchhHHHHHHh-hhh
Q 011270 444 IGVLVCGPESMKESVAKTS-QRK 465 (489)
Q Consensus 444 vGV~~CGP~~l~~~v~~~c-~~~ 465 (489)
-.||+|||+.|.++|.+.+ .+.
T Consensus 195 ~~vyicGp~~m~~~v~~~l~~~~ 217 (232)
T PRK08051 195 YDIYIAGRFEMAKIARELFCRER 217 (232)
T ss_pred CEEEEECCHHHHHHHHHHHHHHc
Confidence 3599999999999999999 774
No 95
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=92.13 E-value=0.14 Score=42.45 Aligned_cols=34 Identities=26% Similarity=0.555 Sum_probs=22.8
Q ss_pred ChHHHH-HHHHh-hcCCccEEEEEeCCcchhHHHHH
Q 011270 427 NFEEIF-SELEK-ETAGSDIGVLVCGPESMKESVAK 460 (489)
Q Consensus 427 n~~~i~-~~~~~-~~~~~~vGV~~CGP~~l~~~v~~ 460 (489)
...+.+ +++.. .....+.-||+|||++|.++|++
T Consensus 74 ~v~~~~~~~~~~~~~~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 74 RVTDLLLEDLLPEKIDPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp SHHHHHHHHHHHHHHCTTTEEEEEEEEHHHHHHHHH
T ss_pred ehhHHHHHhhcccccCCCCCEEEEECCHHHHHHhcC
Confidence 344444 33322 23346778999999999999875
No 96
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=91.01 E-value=0.27 Score=48.78 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=21.6
Q ss_pred ccEEEEEeCCcchhHHHHHHhhhhc
Q 011270 442 SDIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
.+..||+|||+.|.+++.+++.+..
T Consensus 248 ~~~~vyiCGP~~m~~~~~~~l~~~G 272 (283)
T cd06188 248 EDIEFYLCGPPPMNSAVIKMLDDLG 272 (283)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcC
Confidence 4567999999999999999998743
No 97
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=90.80 E-value=0.25 Score=47.76 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=27.9
Q ss_pred CCCChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhhc
Q 011270 424 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 424 ~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+|++...+-+. ....+..||+|||++|.+++.+..++..
T Consensus 194 g~~~~~~l~~~----~~~~~~~v~icGp~~m~~~v~~~l~~~G 232 (247)
T cd06184 194 GRIDLALLREL----LLPADADFYLCGPVPFMQAVREGLKALG 232 (247)
T ss_pred CccCHHHHhhc----cCCCCCEEEEECCHHHHHHHHHHHHHcC
Confidence 67775443321 1234567999999999999999998743
No 98
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=90.32 E-value=0.34 Score=46.20 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=20.7
Q ss_pred cEEEEEeCCcchhHHHHHHhhhhc
Q 011270 443 DIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+-.||+|||+.|.+++++...+.+
T Consensus 193 ~~~v~~CGp~~~~~~~~~~l~~~G 216 (227)
T cd06213 193 ATEAYLCGPPAMIDAAIAVLRALG 216 (227)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcC
Confidence 446999999999999999998743
No 99
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=90.08 E-value=0.22 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=20.6
Q ss_pred cEEEEEeCCcchhHHHHHHhhhh
Q 011270 443 DIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
+..||+|||+.|.+++++.+++.
T Consensus 193 ~~~v~icGp~~m~~~~~~~l~~~ 215 (228)
T cd06209 193 DVDVYLCGPPPMVDAVRSWLDEQ 215 (228)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHc
Confidence 45699999999999999999873
No 100
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=90.02 E-value=0.21 Score=47.71 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=26.9
Q ss_pred CCCChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhhc
Q 011270 424 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 424 ~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+|.+-. ++++..... ++..||+|||+.|.+++.+..++..
T Consensus 181 g~~~~~-~l~~~~~~~--~~~~v~icGp~~m~~~~~~~l~~~g 220 (231)
T cd06215 181 GRLNAE-LLALLVPDL--KERTVFVCGPAGFMKAVKSLLAELG 220 (231)
T ss_pred CcCCHH-HHHHhcCCc--cCCeEEEECCHHHHHHHHHHHHHcC
Confidence 566542 344332221 2346999999999999999998743
No 101
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=89.42 E-value=0.24 Score=47.15 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.9
Q ss_pred cEEEEEeCCcchhHHHHHHhhhhc
Q 011270 443 DIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+..||+|||+.|.+++.++.++..
T Consensus 190 ~~~v~vCGp~~m~~~~~~~l~~~G 213 (224)
T cd06189 190 DFDVYACGSPEMVYAARDDFVEKG 213 (224)
T ss_pred ccEEEEECCHHHHHHHHHHHHHcC
Confidence 456999999999999999998743
No 102
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=89.37 E-value=0.24 Score=47.43 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.9
Q ss_pred cEEEEEeCCcchhHHHHHHhhhhc
Q 011270 443 DIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+--||+|||+.|.+++.+++++..
T Consensus 201 ~~~v~icGp~~m~~~v~~~l~~~G 224 (235)
T cd06217 201 GRRVYVCGPPAFVEAATRLLLELG 224 (235)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcC
Confidence 346999999999999999998743
No 103
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=89.30 E-value=0.51 Score=45.20 Aligned_cols=22 Identities=18% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEEeCCcchhHHHHHHhhhh
Q 011270 444 IGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 444 vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
-.||+|||+.|.+++++..++.
T Consensus 202 ~~vyicGp~~m~~~~~~~l~~~ 223 (236)
T cd06210 202 PDIYLCGPPGMVDAAFAAAREA 223 (236)
T ss_pred cEEEEeCCHHHHHHHHHHHHHc
Confidence 4599999999999999999874
No 104
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=87.97 E-value=0.58 Score=44.31 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=27.3
Q ss_pred CCCChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhh
Q 011270 424 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 424 ~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
.+-...+.+.+... ...+.-||+|||+.|.+++.+..++.
T Consensus 173 ~~g~~~~~~~~~~~--~~~~~~v~vcGp~~~~~~v~~~l~~~ 212 (224)
T cd06187 173 RRGLVTDVVGRDGP--DWADHDIYICGPPAMVDATVDALLAR 212 (224)
T ss_pred CcccHHHHHHHhcc--ccccCEEEEECCHHHHHHHHHHHHHc
Confidence 44455555544322 12345699999999999999999874
No 105
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=87.85 E-value=0.79 Score=44.46 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=29.0
Q ss_pred CCCChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhh
Q 011270 424 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 424 ~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
.+....+.+.+..... .+..||+|||+.|.+++.+.+++.
T Consensus 163 ~~g~v~~~l~~~~~~~--~~~~vyiCGp~~mv~~~~~~L~~~ 202 (246)
T cd06218 163 TKGFVTDLLKELLAEA--RPDVVYACGPEPMLKAVAELAAER 202 (246)
T ss_pred cceehHHHHHHHhhcc--CCCEEEEECCHHHHHHHHHHHHhc
Confidence 3445666665543322 345799999999999999999873
No 106
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=87.72 E-value=0.37 Score=46.07 Aligned_cols=24 Identities=21% Similarity=0.552 Sum_probs=20.6
Q ss_pred cEEEEEeCCcchhHHHHHHhhhhc
Q 011270 443 DIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+.-||+|||+.|.+++++.+++..
T Consensus 197 ~~~vyicGp~~mv~~~~~~l~~~G 220 (231)
T cd06191 197 EREAFICGPAGMMDAVETALKELG 220 (231)
T ss_pred CCeEEEECCHHHHHHHHHHHHHcC
Confidence 346999999999999999998743
No 107
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=87.62 E-value=0.71 Score=44.30 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=31.4
Q ss_pred CChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhhchhhhcccCCCCCceeeecccc
Q 011270 426 PNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNF 487 (489)
Q Consensus 426 Pn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~~~~~~~~~~~~~~~~~fhs~~F 487 (489)
....+++++.. ....--||+|||+.|.+++.+..++.. - .-++|.|+|
T Consensus 153 g~~~~~l~~~~---~~~~~~vyicGp~~m~~~~~~~L~~~g---------~--~~~i~~e~f 200 (233)
T cd06220 153 GFVTDLLKELD---LEEYDAIYVCGPEIMMYKVLEILDERG---------V--RAQFSLERY 200 (233)
T ss_pred ceehHHHhhhc---ccCCCEEEEECCHHHHHHHHHHHHhcC---------C--cEEEEeccc
Confidence 34455665543 112235999999999999999997632 1 456666666
No 108
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=87.35 E-value=0.34 Score=45.77 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEEeCCcchhHHHHHHhhhhc
Q 011270 444 IGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 444 vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
--||+|||+.|.+++.++..+..
T Consensus 187 ~~vyiCGp~~m~~~~~~~l~~~G 209 (218)
T cd06196 187 QHFYVCGPPPMEEAINGALKELG 209 (218)
T ss_pred CEEEEECCHHHHHHHHHHHHHcC
Confidence 35999999999999999998743
No 109
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=87.19 E-value=0.77 Score=46.99 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=19.7
Q ss_pred EEEEEeCCcchhHHHHHHhhhh
Q 011270 444 IGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 444 vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
--||+|||+.|.++++++..+.
T Consensus 208 ~~vyiCGp~~m~~~v~~~L~~~ 229 (352)
T TIGR02160 208 DEWFLCGPQAMVDDAEQALTGL 229 (352)
T ss_pred CEEEEECCHHHHHHHHHHHHHc
Confidence 4599999999999999999874
No 110
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=86.96 E-value=0.41 Score=48.66 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.5
Q ss_pred EEEEEeCCcchhHHHHHHhhhh
Q 011270 444 IGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 444 vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
--||+|||+.|+++++++.++.
T Consensus 204 ~~vyiCGP~~m~~~v~~~l~~~ 225 (332)
T PRK10684 204 RTVMTCGPAPYMDWVEQEVKAL 225 (332)
T ss_pred CEEEEECCHHHHHHHHHHHHHc
Confidence 3599999999999999998874
No 111
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=86.69 E-value=0.8 Score=43.99 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.7
Q ss_pred cEEEEEeCCcchhHHHHHHhhhhc
Q 011270 443 DIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+--||+|||+.|.+++.++..+..
T Consensus 204 ~~~vyvCGp~~m~~~~~~~L~~~G 227 (238)
T cd06211 204 GHKAYLCGPPPMIDACIKTLMQGR 227 (238)
T ss_pred cCEEEEECCHHHHHHHHHHHHHcC
Confidence 456999999999999999998743
No 112
>PRK05713 hypothetical protein; Provisional
Probab=86.41 E-value=0.46 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=19.6
Q ss_pred EEEEEeCCcchhHHHHHHhhhh
Q 011270 444 IGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 444 vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
.-||+|||+.|.+++.+.+++.
T Consensus 275 ~~vyiCGp~~mv~~~~~~L~~~ 296 (312)
T PRK05713 275 TMALLCGSPASVERFARRLYLA 296 (312)
T ss_pred eEEEEeCCHHHHHHHHHHHHHc
Confidence 4599999999999999999873
No 113
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=86.22 E-value=0.48 Score=48.35 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.1
Q ss_pred cEEEEEeCCcchhHHHHHHhhhh
Q 011270 443 DIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
+..||+|||+.|.+++.++..+.
T Consensus 301 ~~~vy~CGp~~mv~~~~~~L~~~ 323 (340)
T PRK11872 301 AFDMYLCGPPPMVEAVKQWLDEQ 323 (340)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc
Confidence 34599999999999999999874
No 114
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=85.59 E-value=0.64 Score=44.79 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=20.8
Q ss_pred cEEEEEeCCcchhHHHHHHhhhhc
Q 011270 443 DIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+..||+|||+.|.+++.++.++..
T Consensus 210 ~~~vyvcGp~~m~~~~~~~l~~~G 233 (243)
T cd06216 210 DRQVYACGPPGFLDAAEELLEAAG 233 (243)
T ss_pred cCeEEEECCHHHHHHHHHHHHHCC
Confidence 357999999999999999998743
No 115
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=85.55 E-value=0.62 Score=44.45 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.1
Q ss_pred ccEEEEEeCCcchhHHHHHHhhhh
Q 011270 442 SDIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
.+-.||+|||+.|.+.+.+..++.
T Consensus 195 ~~~~vyiCGp~~m~~~v~~~l~~~ 218 (232)
T cd06190 195 AEFEFYFAGPPPMVDAVQRMLMIE 218 (232)
T ss_pred cccEEEEECCHHHHHHHHHHHHHh
Confidence 345799999999999999887763
No 116
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=84.73 E-value=0.72 Score=43.70 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.6
Q ss_pred ccEEEEEeCCcchhHHHHHHhhhh
Q 011270 442 SDIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
++..||+|||+.|.+++.+...+.
T Consensus 186 ~~~~vyicGp~~m~~~~~~~L~~~ 209 (222)
T cd06194 186 RDDVVYLCGAPSMVNAVRRRAFLA 209 (222)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc
Confidence 345699999999999999998873
No 117
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=84.69 E-value=0.83 Score=45.00 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=29.9
Q ss_pred CCCCChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhhc
Q 011270 423 GGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 423 g~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
.+|++...+....... . --+|+|||..|++.|+..+.+..
T Consensus 180 ~g~~~~~~l~~~~~~~---~-r~~y~CGp~~fm~av~~~l~~~g 219 (266)
T COG1018 180 QGRIDVSRLLSAAPDG---G-REVYLCGPGPFMQAVRLALEALG 219 (266)
T ss_pred cccccHHHHhccCCCC---C-CEEEEECCHHHHHHHHHHHHHcC
Confidence 5788888776543211 1 34999999999999999997744
No 118
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=83.84 E-value=0.63 Score=43.80 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=20.8
Q ss_pred ccEEEEEeCCcchhHHHHHHhhhh
Q 011270 442 SDIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
++..||+|||+.|.+.+++...+.
T Consensus 190 ~~~~~yvCGp~~m~~~~~~~L~~~ 213 (223)
T cd00322 190 SGALVYICGPPAMAKAVREALVSL 213 (223)
T ss_pred cCCEEEEECCHHHHHHHHHHHHHc
Confidence 456799999999999999998774
No 119
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=83.16 E-value=0.9 Score=47.65 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=20.9
Q ss_pred cEEEEEeCCcchhHHHHHHhhhhc
Q 011270 443 DIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+.-||+|||+.|.+++.+.+.+..
T Consensus 373 ~~~vyiCGP~~m~~av~~~L~~~G 396 (409)
T PRK05464 373 DCEYYMCGPPMMNAAVIKMLKDLG 396 (409)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcC
Confidence 456999999999999999998743
No 120
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=82.80 E-value=1.2 Score=46.50 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.7
Q ss_pred cEEEEEeCCcchhHHHHHHhhhhc
Q 011270 443 DIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+.-||+|||+.|.+++.+...+..
T Consensus 358 ~~~vyiCGp~~m~~~v~~~L~~~G 381 (399)
T PRK13289 358 DADFYFCGPVPFMQFVAKQLLELG 381 (399)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcC
Confidence 456999999999999999998743
No 121
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=82.71 E-value=0.81 Score=46.60 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.5
Q ss_pred cEEEEEeCCcchhHHHHHHhhhhc
Q 011270 443 DIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+.-||+|||+.|.+++.+...+..
T Consensus 298 ~~~vy~CGp~~m~~~~~~~l~~~G 321 (339)
T PRK07609 298 GHQVYACGSPVMVYAARDDFVAAG 321 (339)
T ss_pred CCEEEEECCHHHHHHHHHHHHHcC
Confidence 356999999999999999998743
No 122
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=82.40 E-value=1.9 Score=41.36 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=20.9
Q ss_pred ccEEEEEeCCcchhHHHHHHhhhh
Q 011270 442 SDIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
++.-||+|||+.|.+++.++..+.
T Consensus 205 ~~~~v~icGp~~mv~~v~~~l~~~ 228 (241)
T cd06214 205 EFDEAFLCGPEPMMDAVEAALLEL 228 (241)
T ss_pred cCcEEEEECCHHHHHHHHHHHHHc
Confidence 456799999999999999999874
No 123
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=81.96 E-value=1 Score=43.30 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.4
Q ss_pred ccEEEEEeCCcchhHHHHHHhhh
Q 011270 442 SDIGVLVCGPESMKESVAKTSQR 464 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c~~ 464 (489)
.+.-||+|||++|.+++++.+++
T Consensus 197 ~~~~vyicGp~~mv~~v~~~l~~ 219 (235)
T cd06193 197 GDGYVWIAGEAGAVRALRRHLRE 219 (235)
T ss_pred CCeEEEEEccHHHHHHHHHHHHH
Confidence 34679999999999999999986
No 124
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=81.87 E-value=1.8 Score=42.97 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=25.5
Q ss_pred ChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhh
Q 011270 427 NFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 427 n~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
...+.+++....... .--||+|||+.|.+.+++.+++.
T Consensus 166 ~v~~~l~~~~~~~~~-~~~vy~CGP~~M~~~v~~~l~~~ 203 (281)
T PRK06222 166 FVTDVLKELLESGKK-VDRVVAIGPVIMMKFVAELTKPY 203 (281)
T ss_pred chHHHHHHHhhcCCC-CcEEEEECCHHHHHHHHHHHHhc
Confidence 344555544322221 22499999999999999999874
No 125
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=79.68 E-value=1.2 Score=46.72 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=20.8
Q ss_pred cEEEEEeCCcchhHHHHHHhhhhc
Q 011270 443 DIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+.-||+|||+.|.+++.+..++..
T Consensus 369 ~~~vylCGP~~m~~av~~~L~~~G 392 (405)
T TIGR01941 369 DCEFYMCGPPMMNAAVIKMLEDLG 392 (405)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcC
Confidence 456999999999999999998743
No 126
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=79.06 E-value=1.3 Score=43.03 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.6
Q ss_pred cEEEEEeCCcchhHHHHHHhhh
Q 011270 443 DIGVLVCGPESMKESVAKTSQR 464 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~ 464 (489)
+.-||+|||+.|.+++.+.+.+
T Consensus 206 ~~~vy~CGp~~Mv~~~~~~l~~ 227 (248)
T PRK10926 206 TSHVMLCGNPQMVRDTQQLLKE 227 (248)
T ss_pred CCEEEEECCHHHHHHHHHHHHH
Confidence 4559999999999999999976
No 127
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=78.74 E-value=1.4 Score=43.91 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.1
Q ss_pred cEEEEEeCCcchhHHHHHHhhhh
Q 011270 443 DIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
+--||+|||+.|.+++++..++.
T Consensus 212 ~~~vyiCGP~~m~~~v~~~L~~~ 234 (289)
T PRK08345 212 NTYAAICGPPVMYKFVFKELINR 234 (289)
T ss_pred ccEEEEECCHHHHHHHHHHHHHc
Confidence 34699999999999999998774
No 128
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=77.31 E-value=2.7 Score=41.68 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.1
Q ss_pred cEEEEEeCCcchhHHHHHHhhh
Q 011270 443 DIGVLVCGPESMKESVAKTSQR 464 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~ 464 (489)
+.-||+|||+.|.++|.+++.+
T Consensus 239 ~~~vYiCGp~~m~~~v~~~L~~ 260 (286)
T cd06208 239 NTHVYICGLKGMEPGVDDALTS 260 (286)
T ss_pred CcEEEEeCCchHHHHHHHHHHH
Confidence 3459999999999999988887
No 129
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=77.29 E-value=2.5 Score=41.92 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=29.6
Q ss_pred CCCChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhh
Q 011270 424 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQR 464 (489)
Q Consensus 424 ~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~ 464 (489)
+|.+...|-+.+.....+ ++=|++|||++|.+.++...-+
T Consensus 235 g~It~~~i~~~l~~~~~~-~~~~liCGPp~m~~~~~~~~le 274 (286)
T KOG0534|consen 235 GFITKDLIKEHLPPPKEG-ETLVLICGPPPMINGAAQGNLE 274 (286)
T ss_pred CccCHHHHHhhCCCCCCC-CeEEEEECCHHHHhHHHHHHHH
Confidence 688887777766555555 7889999999999855544443
No 130
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=75.22 E-value=3.4 Score=41.51 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=17.3
Q ss_pred EEEEEeCCcchhHHHHHHhhh
Q 011270 444 IGVLVCGPESMKESVAKTSQR 464 (489)
Q Consensus 444 vGV~~CGP~~l~~~v~~~c~~ 464 (489)
--||+|||++|.+.+.+++.+
T Consensus 260 ~~vYiCGp~~mv~~v~~~L~~ 280 (307)
T PLN03116 260 AHIYFCGLKGMMPGIQDTLKR 280 (307)
T ss_pred cEEEEeCCHHHHHHHHHHHHH
Confidence 459999999999887776665
No 131
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=73.60 E-value=2.2 Score=42.47 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=18.2
Q ss_pred cEEEEEeCCcchhHHHHHHhhh
Q 011270 443 DIGVLVCGPESMKESVAKTSQR 464 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~ 464 (489)
+.-||+|||+.|.++|.+...+
T Consensus 245 ~~~vyiCGp~~M~~~v~~~L~~ 266 (289)
T cd06201 245 GAQIMVCGSRAMAQGVAAVLEE 266 (289)
T ss_pred CcEEEEECCHHHHHHHHHHHHH
Confidence 3459999999999888877765
No 132
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=73.04 E-value=4.6 Score=39.11 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.6
Q ss_pred EEEEeCCcchhHHHHHHhhhh
Q 011270 445 GVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 445 GV~~CGP~~l~~~v~~~c~~~ 465 (489)
-||+|||+.|.+.+.+..++.
T Consensus 182 ~vyiCGP~~m~~~~~~~l~~~ 202 (248)
T cd06219 182 LVIAIGPPIMMKAVSELTRPY 202 (248)
T ss_pred EEEEECCHHHHHHHHHHHHHc
Confidence 499999999999999988763
No 133
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=72.19 E-value=2.4 Score=41.26 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.8
Q ss_pred cEEEEEeCCcchhHHHHHHhhhhc
Q 011270 443 DIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+-.||+|||+.|.+++.++.++..
T Consensus 190 ~~~vyicGp~~mv~~~~~~L~~~G 213 (253)
T cd06221 190 NTVAIVCGPPIMMRFVAKELLKLG 213 (253)
T ss_pred CcEEEEECCHHHHHHHHHHHHHcC
Confidence 456999999999999999998754
No 134
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=71.55 E-value=2.8 Score=41.26 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=18.1
Q ss_pred EEEEeCCcc-hhHHHHHHhhhh
Q 011270 445 GVLVCGPES-MKESVAKTSQRK 465 (489)
Q Consensus 445 GV~~CGP~~-l~~~v~~~c~~~ 465 (489)
-||+|||+. |.+++.++..+.
T Consensus 216 ~vyvCGp~~~m~~~v~~~L~~~ 237 (267)
T cd06182 216 HIYVCGDAKSMAKDVEDALVKI 237 (267)
T ss_pred EEEEECCcccchHHHHHHHHHH
Confidence 699999999 988888887774
No 135
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=70.71 E-value=3.4 Score=39.23 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=21.3
Q ss_pred ccEEEEEeCCcchhH-HHHHHhhhhc
Q 011270 442 SDIGVLVCGPESMKE-SVAKTSQRKS 466 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~-~v~~~c~~~~ 466 (489)
.+..||+|||+.|.+ ++++..++..
T Consensus 200 ~~~~~~icGp~~~~~~~~~~~l~~~G 225 (234)
T cd06183 200 EDTLVLVCGPPPMIEGAVKGLLKELG 225 (234)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHcC
Confidence 456799999999999 9999998743
No 136
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=70.47 E-value=3 Score=40.35 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=17.7
Q ss_pred EEEEEeCCc-chhHHHHHHhhh
Q 011270 444 IGVLVCGPE-SMKESVAKTSQR 464 (489)
Q Consensus 444 vGV~~CGP~-~l~~~v~~~c~~ 464 (489)
--||+|||+ .|.++|.+...+
T Consensus 203 ~~vy~CGp~~~m~~~v~~~l~~ 224 (245)
T cd06200 203 AAIYVCGSLQGMAPGVDAVLDE 224 (245)
T ss_pred cEEEEECCchhhhHHHHHHHHH
Confidence 349999999 999998887665
No 137
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=69.36 E-value=4.8 Score=39.02 Aligned_cols=37 Identities=24% Similarity=0.476 Sum_probs=26.0
Q ss_pred CCChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhh
Q 011270 425 RPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 425 RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
+....+++.+.. . ..--||+|||+.|.+++.+..++.
T Consensus 167 ~g~v~~~l~~~~---~-~~~~vyvCGp~~m~~~v~~~l~~~ 203 (250)
T PRK00054 167 KGFVTDVLDELD---S-EYDAIYSCGPEIMMKKVVEILKEK 203 (250)
T ss_pred ccchhHhHhhhc---c-CCCEEEEeCCHHHHHHHHHHHHHc
Confidence 345556665543 1 122599999999999999998873
No 138
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=68.10 E-value=3.2 Score=42.13 Aligned_cols=18 Identities=33% Similarity=0.709 Sum_probs=16.0
Q ss_pred EEEEEeCCcchhHHHHHH
Q 011270 444 IGVLVCGPESMKESVAKT 461 (489)
Q Consensus 444 vGV~~CGP~~l~~~v~~~ 461 (489)
--||+|||+.|.+.|+..
T Consensus 264 ~~vylCGPp~Mm~av~~~ 281 (325)
T PTZ00274 264 KIIMLCGPDQLLNHVAGT 281 (325)
T ss_pred cEEEEeCCHHHHHHhcCC
Confidence 459999999999999876
No 139
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=66.73 E-value=3.8 Score=39.42 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.5
Q ss_pred EEEEEeCCcchhHHHHHHhhhh
Q 011270 444 IGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 444 vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
.-||+|||+.|.+++++..++.
T Consensus 179 ~~v~icGp~~mv~~~~~~l~~~ 200 (243)
T cd06192 179 DRIIVAGSDIMMKAVVEALDEW 200 (243)
T ss_pred CEEEEECCHHHHHHHHHHHHhh
Confidence 3599999999999999998874
No 140
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=66.48 E-value=7.3 Score=40.24 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=17.0
Q ss_pred cEEEEEeCCcchhHHHHHHhhh
Q 011270 443 DIGVLVCGPESMKESVAKTSQR 464 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~ 464 (489)
+.-||+|||++|.++|.++-.+
T Consensus 319 ~~~vYiCGp~~M~~~V~~~l~~ 340 (367)
T PLN03115 319 NTYVYMCGLKGMEKGIDDIMVS 340 (367)
T ss_pred CeEEEEeCCHHHHHHHHHHHHH
Confidence 4569999999997777666554
No 141
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=63.78 E-value=4.8 Score=41.79 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=22.3
Q ss_pred CCeEEEEeecCCCCcccCCeEEEEecCCC
Q 011270 98 SKAIELILPKHAGLKFTPTSVIFMKIPSI 126 (489)
Q Consensus 98 ~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~ 126 (489)
.++..+.+..+.++.|+||.++-|..++-
T Consensus 15 ~~~~~~~~~~~~~~~y~~GD~l~v~P~N~ 43 (384)
T cd06206 15 PSKRHLELRLPDGMTYRAGDYLAVLPRNP 43 (384)
T ss_pred ccEEEEEEECCCCCccCCCCEEEEECCCC
Confidence 35677777665678999999999987653
No 142
>PRK05802 hypothetical protein; Provisional
Probab=60.49 E-value=5.7 Score=40.22 Aligned_cols=19 Identities=5% Similarity=0.195 Sum_probs=18.1
Q ss_pred EEEeCCcchhHHHHHHhhh
Q 011270 446 VLVCGPESMKESVAKTSQR 464 (489)
Q Consensus 446 V~~CGP~~l~~~v~~~c~~ 464 (489)
||+|||+.|.+.|+++..+
T Consensus 257 vy~CGP~~M~k~v~~~l~~ 275 (320)
T PRK05802 257 IHCGGSDILHYKIIEYLDK 275 (320)
T ss_pred EEEECCHHHHHHHHHHHhh
Confidence 9999999999999999886
No 143
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=59.45 E-value=6.3 Score=38.38 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.9
Q ss_pred cEEEEEeCCcchhHHHHHHhhhhc
Q 011270 443 DIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
.--||+|||+.|.+.+++...++.
T Consensus 192 ~~~v~~cGp~~M~~~v~~~~~~~g 215 (252)
T COG0543 192 VDDVYICGPPAMVKAVREKLKEYG 215 (252)
T ss_pred CCEEEEECCHHHHHHHHHHHHhcC
Confidence 345999999999999999998865
No 144
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=57.25 E-value=12 Score=39.44 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=15.0
Q ss_pred EEEEEeCCcch----hHHHHHHhhh
Q 011270 444 IGVLVCGPESM----KESVAKTSQR 464 (489)
Q Consensus 444 vGV~~CGP~~l----~~~v~~~c~~ 464 (489)
.-||+|||+.| .+.+++++.+
T Consensus 364 ~~vYiCGp~~M~~~v~~~L~~~~~~ 388 (411)
T TIGR03224 364 TYIYICGLKGMEEGVLDAFRDVCAT 388 (411)
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHH
Confidence 45999999999 5555555543
No 145
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=56.94 E-value=10 Score=37.14 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.0
Q ss_pred cEEEEEeCCcchhHHHHHHhhhh
Q 011270 443 DIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
+-.||+|||+.|.+++.+...+.
T Consensus 190 ~~~v~lCGp~~mv~~~~~~L~~~ 212 (261)
T TIGR02911 190 EVQAIVVGPPIMMKFTVQELLKK 212 (261)
T ss_pred ceEEEEECCHHHHHHHHHHHHHc
Confidence 45699999999999999988774
No 146
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=56.32 E-value=7.4 Score=40.39 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=21.7
Q ss_pred CeEEEEeec-CCCCcccCCeEEEEecCCC
Q 011270 99 KAIELILPK-HAGLKFTPTSVIFMKIPSI 126 (489)
Q Consensus 99 ~~~~l~~~~-~~~~~~~pGQ~v~l~~p~~ 126 (489)
++.++++.. +.++.|+||+++.|..++.
T Consensus 16 ~~~hl~l~~~~~~~~y~~GD~l~v~p~N~ 44 (382)
T cd06207 16 STRHIEFDLGGSGLSYETGDNLGIYPENS 44 (382)
T ss_pred eEEEEEEecCCCCCccCCCCEEEEEcCCC
Confidence 467788875 3578999999999987653
No 147
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=54.68 E-value=29 Score=29.09 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHhch-----hHHHhhchhhHHHHhHHHH-HHHHHHHHhcC
Q 011270 13 AGEIALVTGLVMWITSL-----PQIRRKKFEFFYYTHHLYI-IFLIFFLFHAG 59 (489)
Q Consensus 13 ~G~ia~~~~~~m~~~S~-----~~iRr~~ye~F~~~H~l~~-~~~v~~~~H~~ 59 (489)
.|.++++.+.+..+.+. ...+...++.+...|...+ +.+++..+|..
T Consensus 1 ~G~~a~~~l~~~~~l~~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~ 53 (125)
T PF01794_consen 1 LGILAFALLPLVFLLGLRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHGV 53 (125)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777777776652 2345668999999999876 56778888863
No 148
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=52.63 E-value=8.7 Score=44.83 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.6
Q ss_pred EEEEeCCcchhHHHHHHhhhhc
Q 011270 445 GVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 445 GV~~CGP~~l~~~v~~~c~~~~ 466 (489)
-||+|||+.|++.|++++.++.
T Consensus 849 ~Vy~CGP~~Mmkav~~~l~~~G 870 (944)
T PRK12779 849 EVIAIGPPLMMRAVSDLTKPYG 870 (944)
T ss_pred EEEEECCHHHHHHHHHHHHHcC
Confidence 4999999999999999998753
No 149
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=50.60 E-value=15 Score=34.85 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=18.2
Q ss_pred CcceeeeEEeecCCCCCCeEEEEEEe
Q 011270 128 KFQWHSFSITSSSSVDDQTMSLIVKC 153 (489)
Q Consensus 128 ~~~~hPFSIas~p~~~~~~l~l~Ik~ 153 (489)
+.+.|.|||+|+|...++.++++|..
T Consensus 176 ~l~PR~YSIsSS~~~~p~~v~ltv~v 201 (219)
T PF00667_consen 176 PLQPRYYSISSSPLVHPNKVHLTVSV 201 (219)
T ss_dssp B---EEEEB-S-TTTSTTEEEEEEEE
T ss_pred CCCCcceeecccccCCCCEEEEEEEE
Confidence 34789999999998778899999875
No 150
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=49.86 E-value=11 Score=39.60 Aligned_cols=38 Identities=5% Similarity=0.137 Sum_probs=26.0
Q ss_pred eeEEEEEEeC----CCeEEEEeecCC-CCcccCCeEEEEecCC
Q 011270 88 TCILSARVFP----SKAIELILPKHA-GLKFTPTSVIFMKIPS 125 (489)
Q Consensus 88 ~~vv~~~~~~----~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~ 125 (489)
+.+++.+.++ .++..+.+..+. ++.|+||+++.|..++
T Consensus 8 ~~v~~~~~lt~~~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N 50 (416)
T cd06204 8 APVAVSRELFTGSDRSCLHIEFDISGSGIRYQTGDHLAVWPTN 50 (416)
T ss_pred eEEEEEeeccCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCC
Confidence 3455555554 256677776433 6899999999998765
No 151
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=49.47 E-value=13 Score=36.26 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.1
Q ss_pred ccEEEEEeCCcchhHHHHHHhhhh
Q 011270 442 SDIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
.+-.||+|||+.|.+++.+.-++.
T Consensus 191 ~~~~vylCGp~~mv~~~~~~L~~~ 214 (263)
T PRK08221 191 DNMQVIVVGPPIMMKFTVLEFLKR 214 (263)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc
Confidence 345699999999999999887764
No 152
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=48.43 E-value=12 Score=38.57 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=21.9
Q ss_pred CCeEEEEeecC-CCCcccCCeEEEEecCCC
Q 011270 98 SKAIELILPKH-AGLKFTPTSVIFMKIPSI 126 (489)
Q Consensus 98 ~~~~~l~~~~~-~~~~~~pGQ~v~l~~p~~ 126 (489)
.++.++++..+ .++.|+||.++.|..++.
T Consensus 15 ~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~ 44 (360)
T cd06199 15 KETRHIELDLEGSGLSYEPGDALGVYPTND 44 (360)
T ss_pred ccEEEEEEeCCCCCCcccCCCEEEEEcCCC
Confidence 34777777644 368999999999987654
No 153
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=48.16 E-value=13 Score=39.06 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=21.6
Q ss_pred CCeEEEEeecC--CCCcccCCeEEEEecCCC
Q 011270 98 SKAIELILPKH--AGLKFTPTSVIFMKIPSI 126 (489)
Q Consensus 98 ~~~~~l~~~~~--~~~~~~pGQ~v~l~~p~~ 126 (489)
.+++.+.+..+ +++.|+||.++.|..++.
T Consensus 15 ~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~ 45 (406)
T cd06202 15 RSTILVKLDTNGAQELHYQPGDHVGIFPANR 45 (406)
T ss_pred ceEEEEEEECCCCCCCCCCCCCEEEEEeCCC
Confidence 35666777643 478999999999987653
No 154
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=48.10 E-value=14 Score=36.97 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=16.1
Q ss_pred cEEEEEeCCcchhH-HHHHHhhh
Q 011270 443 DIGVLVCGPESMKE-SVAKTSQR 464 (489)
Q Consensus 443 ~vGV~~CGP~~l~~-~v~~~c~~ 464 (489)
+.-||+|||+.|.+ .+.+.-.+
T Consensus 267 ~~~vyiCGp~~mv~~~~~~~L~~ 289 (300)
T PTZ00319 267 KVMALMCGPPPMLQMAVKPNLEK 289 (300)
T ss_pred CeEEEEECCHHHHHHHHHHHHHH
Confidence 45699999999988 45544444
No 155
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=47.16 E-value=12 Score=42.58 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=19.0
Q ss_pred EEEEeCCcchhHHHHHHhhhh
Q 011270 445 GVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 445 GV~~CGP~~l~~~v~~~c~~~ 465 (489)
-||+|||+.|.+.+++++++.
T Consensus 183 ~vy~CGP~~M~~~v~~~l~~~ 203 (752)
T PRK12778 183 KVFAIGPAIMMKFVCLLTKKY 203 (752)
T ss_pred EEEEECCHHHHHHHHHHHHHc
Confidence 399999999999999999874
No 156
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=44.41 E-value=24 Score=41.55 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.1
Q ss_pred EEEeCCcchhHHHHHHhhhhc
Q 011270 446 VLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 446 V~~CGP~~l~~~v~~~c~~~~ 466 (489)
||+|||+.|++.|+++.+++.
T Consensus 184 vy~CGP~~Mm~av~~~~~~~g 204 (1006)
T PRK12775 184 VVAIGPLPMMNACVETTRPFG 204 (1006)
T ss_pred EEEECCHHHHHHHHHHHHHCC
Confidence 999999999999999998753
No 157
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=37.54 E-value=21 Score=39.41 Aligned_cols=38 Identities=11% Similarity=0.203 Sum_probs=25.5
Q ss_pred eeEEEEEEeCC-----CeEEEEeec-CCCCcccCCeEEEEecCC
Q 011270 88 TCILSARVFPS-----KAIELILPK-HAGLKFTPTSVIFMKIPS 125 (489)
Q Consensus 88 ~~vv~~~~~~~-----~~~~l~~~~-~~~~~~~pGQ~v~l~~p~ 125 (489)
..+++.+.+++ ++.++++.. +.++.|+||+++-|..++
T Consensus 237 a~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N 280 (597)
T TIGR01931 237 AEVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKN 280 (597)
T ss_pred EEEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCC
Confidence 34555665542 466777764 346889999999997654
No 158
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=36.04 E-value=46 Score=34.04 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=21.7
Q ss_pred CeEEEEEeCCC--hhhHHHHHHHHHH
Q 011270 198 DSLLLVAGGIG--ITPFLSILQEIAS 221 (489)
Q Consensus 198 ~~vvlIAGGiG--ITP~lsil~~l~~ 221 (489)
+++++.|||+| |.|.+++.++|..
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHh
Confidence 46899999999 9999999999975
No 159
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=35.96 E-value=25 Score=42.19 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=20.7
Q ss_pred ccEEEEEeCCcchhHHHHHHhhhh
Q 011270 442 SDIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
.+.-||+|||+.|.+++.+...+.
T Consensus 1128 ~~~~vyiCGP~~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306 1128 KDLLVAICGPPVMQRAVKADLLAL 1151 (1167)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc
Confidence 456799999999999999998773
No 160
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=33.87 E-value=33 Score=36.64 Aligned_cols=67 Identities=19% Similarity=0.346 Sum_probs=51.5
Q ss_pred cceeeeeeCCCCChHHHHHHHHhhcCC-ccEEEEE-eCCcchhHHHHHHhhhhchhhhcccCCCCCceeeecccc
Q 011270 415 EEEHEINFGGRPNFEEIFSELEKETAG-SDIGVLV-CGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNF 487 (489)
Q Consensus 415 ~~~~~~~~g~RPn~~~i~~~~~~~~~~-~~vGV~~-CGP~~l~~~v~~~c~~~~~~~~~~~~~~~~~~~fhs~~F 487 (489)
.++.++-||+..++++.++++.++++. +-|+|+. |-++-+.+++...|++.... ...+-+.+++..|
T Consensus 106 l~E~diVfGGe~kL~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDDi~av~~~~~~~------~~~pVi~v~t~gf 174 (466)
T TIGR01282 106 FQEKDIVFGGDKKLKKAIDEIEELFPLNKGISIQSECPVGLIGDDIEAVAKKASKE------LGKPVVPVRCEGF 174 (466)
T ss_pred CCccceecCcHHHHHHHHHHHHHhCCcccEEEEeCCChHHHhccCHHHHHHHHhhh------cCCcEEEEeCCCc
Confidence 455678899999999999999999886 6788886 66677789999999885432 1245677777776
No 161
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=32.97 E-value=1.1e+02 Score=22.63 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=20.3
Q ss_pred HhhchhhHHHHhHHHH-HHHHHHHHhcC
Q 011270 33 RRKKFEFFYYTHHLYI-IFLIFFLFHAG 59 (489)
Q Consensus 33 Rr~~ye~F~~~H~l~~-~~~v~~~~H~~ 59 (489)
.......+..+|...+ +++++..+|..
T Consensus 34 ~~~~~~~~~~iH~~~g~~~~~l~~~Hl~ 61 (64)
T PF14358_consen 34 LGLNKHFWRNIHLWAGYLFLILIILHLG 61 (64)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344568889999876 67888888864
No 162
>PLN02252 nitrate reductase [NADPH]
Probab=32.68 E-value=48 Score=38.51 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=17.7
Q ss_pred ccEEEEEeCCcchhHH-HHHHhhh
Q 011270 442 SDIGVLVCGPESMKES-VAKTSQR 464 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~-v~~~c~~ 464 (489)
.+.-||+|||+.|.+. +.....+
T Consensus 854 ~~~~vyiCGPp~Mi~~av~~~L~~ 877 (888)
T PLN02252 854 DETLALMCGPPPMIEFACQPNLEK 877 (888)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3556999999999985 6666655
No 163
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=31.64 E-value=45 Score=34.79 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=21.7
Q ss_pred CCeEEEEeec-CCCCcccCCeEEEEecCCC
Q 011270 98 SKAIELILPK-HAGLKFTPTSVIFMKIPSI 126 (489)
Q Consensus 98 ~~~~~l~~~~-~~~~~~~pGQ~v~l~~p~~ 126 (489)
.++.++.+.. +.++.|+||.++-|..++.
T Consensus 15 ~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~ 44 (398)
T cd06203 15 KTVVDLTLDLSPTGFDYQPGDTIGILPPNT 44 (398)
T ss_pred ceEEEEEEecCCCCCcCCCCCEEEEeCCCC
Confidence 4667777764 2468999999999987653
No 164
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=31.14 E-value=36 Score=35.81 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=49.6
Q ss_pred cceeeeeeCCCCChHHHHHHHHhhcCC-ccEEEEE-eCCcchhHHHHHHhhhhchhhhcccCCCCCceeeecccc
Q 011270 415 EEEHEINFGGRPNFEEIFSELEKETAG-SDIGVLV-CGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNF 487 (489)
Q Consensus 415 ~~~~~~~~g~RPn~~~i~~~~~~~~~~-~~vGV~~-CGP~~l~~~v~~~c~~~~~~~~~~~~~~~~~~~fhs~~F 487 (489)
..+.++-||+..++++.++++.++++. +-|+|+. |-|+-+.+++...|++.... ...+-+..++..|
T Consensus 73 l~E~dvVfGg~~kL~~~I~~~~~~~~p~~~I~V~tTC~~~iIGdDi~~v~~~~~~~------~~~pvi~v~t~gf 141 (421)
T cd01976 73 FQEKDIVFGGDKKLAKAIDEAYELFPLNKGISVQSECPVGLIGDDIEAVARKASKE------LGIPVVPVRCEGF 141 (421)
T ss_pred CCccceecCCHHHHHHHHHHHHHhCCCccEEEEECCChHHHhccCHHHHHHHHHHh------hCCCEEEEeCCCc
Confidence 445568899999999999999999876 6788776 66777789999999875421 1234556666555
No 165
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=28.72 E-value=59 Score=34.20 Aligned_cols=72 Identities=22% Similarity=0.259 Sum_probs=51.4
Q ss_pred cceeeeeeCCCCChHHHHHHHHhhcCCccEEEEE-eCCcchhHHHHHHhhhhchhhhcccCCCCCceeeeccccc
Q 011270 415 EEEHEINFGGRPNFEEIFSELEKETAGSDIGVLV-CGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNFT 488 (489)
Q Consensus 415 ~~~~~~~~g~RPn~~~i~~~~~~~~~~~~vGV~~-CGP~~l~~~v~~~c~~~~~~~~~~~~~~~~~~~fhs~~F~ 488 (489)
..+.++-||+.-|+++-+.++.++.+.+-|+|+. |.|+-.-+++...|++....+ .+.....-+.+++..|.
T Consensus 56 l~E~d~VfGg~~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi~~v~~~~~~~~--p~~~~~~vi~v~t~gf~ 128 (417)
T cd01966 56 MDEVSTILGGGENLEEALDTLAERAKPKVIGLLSTGLTETRGEDIAGALKQFRAEH--PELADVPVVYVSTPDFE 128 (417)
T ss_pred cCCCcEEECCHHHHHHHHHHHHHhcCCCEEEEECCCcccccccCHHHHHHHHHhhc--cccCCCeEEEecCCCCC
Confidence 4455688999999999999999888877788876 666666889999998754211 00012456777777663
No 166
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=28.67 E-value=1.2e+02 Score=28.45 Aligned_cols=28 Identities=4% Similarity=0.087 Sum_probs=22.4
Q ss_pred EEEeCCCeEEEEeecCCCCcccCCeEEE
Q 011270 93 ARVFPSKAIELILPKHAGLKFTPTSVIF 120 (489)
Q Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~pGQ~v~ 120 (489)
++...+|++++.+..+-..+.+||-|.-
T Consensus 149 VeEv~~~~v~V~V~dDI~ANVkPg~YwV 176 (206)
T PF09874_consen 149 VEEVKENLVRVFVHDDIAANVKPGYYWV 176 (206)
T ss_pred EEEecCCEEEEEEccchhhcCCCCeEEe
Confidence 3667788999988877678899999864
No 167
>PF15179 Myc_target_1: Myc target protein 1
Probab=25.56 E-value=1e+02 Score=28.36 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHH-hhhccCC
Q 011270 369 IILSSFIIAITGSTLMAILLRW-RRLKKQT 397 (489)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 397 (489)
-+-+||+|++++|+++-+++.| .|++.++
T Consensus 24 aF~vSm~iGLviG~li~~LltwlSRRRASa 53 (197)
T PF15179_consen 24 AFCVSMAIGLVIGALIWALLTWLSRRRASA 53 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3458888898889988888888 4555554
No 168
>PLN02631 ferric-chelate reductase
Probab=25.15 E-value=1.4e+02 Score=33.67 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=38.1
Q ss_pred hhhhhHHHHHHHHHHHHhch-----hHHHhhchhhHHHHhHHHH-HHHHHHHHhc
Q 011270 10 IYLAGEIALVTGLVMWITSL-----PQIRRKKFEFFYYTHHLYI-IFLIFFLFHA 58 (489)
Q Consensus 10 ~~~~G~ia~~~~~~m~~~S~-----~~iRr~~ye~F~~~H~l~~-~~~v~~~~H~ 58 (489)
...+|++++.++.++++.+. .++=...||.|...|...+ +.+++..+|.
T Consensus 153 g~RtGila~~~lpll~L~a~Rnn~L~~ltG~s~e~~i~yHRWlGri~~~la~iH~ 207 (699)
T PLN02631 153 GLRIGYVGHICWAFLFFPVTRASTILPLVGLTSESSIKYHIWLGHVSNFLFLVHT 207 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999988888753 4444456999999999876 5667777885
No 169
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=23.92 E-value=89 Score=32.90 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=48.1
Q ss_pred cceeeeeeCCCCChHHHHHHHHhhcCCccEEEEE-eCCcchhHHHHHHhhhhchhhhcccCCCCCceeeecccc
Q 011270 415 EEEHEINFGGRPNFEEIFSELEKETAGSDIGVLV-CGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNF 487 (489)
Q Consensus 415 ~~~~~~~~g~RPn~~~i~~~~~~~~~~~~vGV~~-CGP~~l~~~v~~~c~~~~~~~~~~~~~~~~~~~fhs~~F 487 (489)
..+.++-||+.-++++-+.++.++.+.+-|+|+. |-|+.+.+++...|++..+ ...+-+.+++..|
T Consensus 61 l~E~d~V~Gg~~kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi~~v~~~~~~-------~~~~vi~v~t~gf 127 (427)
T cd01971 61 ATETEIVFGGEDRLRELIKSTLSIIDADLFVVLTGCIAEIIGDDVGAVVSEFQE-------GGAPIVYLETGGF 127 (427)
T ss_pred CCccceEeCCHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcCHHHHHHHhhh-------cCCCEEEEECCCc
Confidence 3444577899999999999988887777888887 5566668889988887521 2235566666665
No 170
>PF06223 Phage_tail_T: Minor tail protein T; InterPro: IPR009350 This family represents the minor tail protein T of Lambda-like viruses and their prophage. The minor tail protein T is located at the distal end and is involved in the assembly of the initiator complex for tail polymerisation. The protein is essential for tail assembly but is not found in the mature virion [].
Probab=23.43 E-value=39 Score=28.02 Aligned_cols=13 Identities=38% Similarity=1.140 Sum_probs=11.6
Q ss_pred eCCCCChHHHHHHH
Q 011270 422 FGGRPNFEEIFSEL 435 (489)
Q Consensus 422 ~g~RPn~~~i~~~~ 435 (489)
| +||||+.++.++
T Consensus 6 f-~R~dWR~MLa~M 18 (103)
T PF06223_consen 6 F-GRPDWRRMLAEM 18 (103)
T ss_pred h-cCchHHHHHHhc
Confidence 6 899999999876
No 171
>PRK06214 sulfite reductase; Provisional
Probab=22.96 E-value=55 Score=35.60 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=27.0
Q ss_pred eeEEEEEEeCC-----CeEEEEeecC-CCCcccCCeEEEEecCC
Q 011270 88 TCILSARVFPS-----KAIELILPKH-AGLKFTPTSVIFMKIPS 125 (489)
Q Consensus 88 ~~vv~~~~~~~-----~~~~l~~~~~-~~~~~~pGQ~v~l~~p~ 125 (489)
..+++.+.++. ++.+|++..+ .++.|+||.++.|...+
T Consensus 171 a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N 214 (530)
T PRK06214 171 ATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPAN 214 (530)
T ss_pred EEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccC
Confidence 34566666642 4777777644 46899999999997654
No 172
>TIGR01715 phage_lam_T phage tail assembly protein T. This model represents a translation of the T gene in phage lambda and related phage. A translational frameshift from the upstream gene G into the frame of T produces a minor protein gpG-T, essential in tail assembly but not found in the mature virion.
Probab=22.13 E-value=45 Score=27.44 Aligned_cols=12 Identities=25% Similarity=0.908 Sum_probs=10.8
Q ss_pred CCCChHHHHHHH
Q 011270 424 GRPNFEEIFSEL 435 (489)
Q Consensus 424 ~RPn~~~i~~~~ 435 (489)
+||+|+.++.++
T Consensus 2 ~rpdWR~mLa~M 13 (100)
T TIGR01715 2 GRPDWRAMLAGM 13 (100)
T ss_pred CCchHHHHHHhc
Confidence 799999999876
No 173
>PLN03111 DNA-directed RNA polymerase II subunit family protein; Provisional
Probab=20.64 E-value=71 Score=30.10 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=26.8
Q ss_pred eeCCCCChHHHHH-HHHhhcCCccEEEEEeCCcch-hHHHHHHhh
Q 011270 421 NFGGRPNFEEIFS-ELEKETAGSDIGVLVCGPESM-KESVAKTSQ 463 (489)
Q Consensus 421 ~~g~RPn~~~i~~-~~~~~~~~~~vGV~~CGP~~l-~~~v~~~c~ 463 (489)
.||.+|+.+++.- .-....+...+.||+|+++++ .+.++..|.
T Consensus 44 ~~~~~~~r~~l~~~~~~~~d~~~~i~V~F~~~~kvgvk~ir~~~~ 88 (206)
T PLN03111 44 KFGEKPKREDLRISAPKRSDPSKKILVFFPEEEKVGVKTIKTYAE 88 (206)
T ss_pred HHcCCcCHHHcEeeeecCCCCCCcEEEEeCCCCccCHHHHHHHHH
Confidence 4678888777632 222333447899999999877 344444444
No 174
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=20.34 E-value=1.1e+02 Score=30.29 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=28.2
Q ss_pred HHHHHHhhcCC-ccEEEEEeCCcchhHHHHHHhhhhc
Q 011270 431 IFSELEKETAG-SDIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 431 i~~~~~~~~~~-~~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
++++.-+.|++ ++---|+|||+-|..+|-++-....
T Consensus 361 ~~en~Lk~h~aPEDceyYmCGPp~mNasvikmL~dlG 397 (410)
T COG2871 361 LYENYLKDHEAPEDCEYYMCGPPLMNASVIKMLKDLG 397 (410)
T ss_pred HHhhhhhcCCCchheeEEeeCcchhhHHHHHHHHhcC
Confidence 34455666775 7888999999999999999877643
No 175
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=20.22 E-value=1e+02 Score=32.30 Aligned_cols=67 Identities=18% Similarity=0.286 Sum_probs=50.1
Q ss_pred cceeeeeeCCC-CChHHHHHHHHhhcCCccEEEEE-eCCcchhHHHHHHhhhhchhhhcccCCCCCceeeecccc
Q 011270 415 EEEHEINFGGR-PNFEEIFSELEKETAGSDIGVLV-CGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNF 487 (489)
Q Consensus 415 ~~~~~~~~g~R-Pn~~~i~~~~~~~~~~~~vGV~~-CGP~~l~~~v~~~c~~~~~~~~~~~~~~~~~~~fhs~~F 487 (489)
.++.++-+|+. .++++.++++.++++.+=|+|+. |-|+...+++...|++.... ...+-+..++..|
T Consensus 58 l~e~Div~G~~~~~L~~aI~~i~~~~~P~~I~V~tTC~se~IGDDi~~v~~~~~~~------~~~pVi~v~tpgf 126 (407)
T TIGR01279 58 LEESDLSSAAPAEELDRVVEQIKRDRNPSVIFLLSSCTPEVIKMDLEGLAERLSTN------FGVPVLFAPASGL 126 (407)
T ss_pred cCchhhhcccchHHHHHHHHHHHhhcCCCEEEEECCchHHHHHhhHHHHHHHHHHh------hCCCEEEeeCCCc
Confidence 44455667888 89999999999998888888887 66677799999999985421 1235566676666
No 176
>PLN02292 ferric-chelate reductase
Probab=20.01 E-value=2e+02 Score=32.51 Aligned_cols=49 Identities=12% Similarity=0.018 Sum_probs=37.1
Q ss_pred hhhhhHHHHHHHHHHHHhc-----hhHHHhhchhhHHHHhHHHH-HHHHHHHHhc
Q 011270 10 IYLAGEIALVTGLVMWITS-----LPQIRRKKFEFFYYTHHLYI-IFLIFFLFHA 58 (489)
Q Consensus 10 ~~~~G~ia~~~~~~m~~~S-----~~~iRr~~ye~F~~~H~l~~-~~~v~~~~H~ 58 (489)
...+|+++..++.++++.+ +.++=...||.|...|...+ +.+++..+|+
T Consensus 170 g~R~Gila~~~lpll~l~~~Rnn~L~~ltG~s~e~f~~yHRWlGrii~ll~~lH~ 224 (702)
T PLN02292 170 AVRLGLVGNICLAFLFYPVARGSSLLAAVGLTSESSIKYHIWLGHLVMTLFTSHG 224 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999988888888754 34444556999999999876 5666777885
Done!