Query 011270
Match_columns 489
No_of_seqs 387 out of 2463
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 04:40:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qfj_A Protein (flavin reducta 100.0 8.2E-28 2.8E-32 230.3 22.6 205 87-318 4-210 (232)
2 1tvc_A Methane monooxygenase c 100.0 1.3E-27 4.6E-32 231.5 18.8 206 87-318 12-226 (250)
3 3vo2_A Putative uncharacterize 100.0 2.2E-27 7.4E-32 237.6 20.9 213 88-317 36-277 (310)
4 4g1v_A Flavohemoglobin; three 100.0 3E-27 1E-31 244.6 22.5 166 87-274 151-339 (399)
5 4eh1_A Flavohemoprotein; struc 100.0 2.1E-27 7.1E-32 229.0 19.6 202 86-318 4-217 (243)
6 3lo8_A Ferredoxin--NADP reduct 100.0 2.5E-27 8.6E-32 237.1 19.2 214 87-317 30-278 (311)
7 2eix_A NADH-cytochrome B5 redu 99.9 3.2E-27 1.1E-31 227.7 18.6 210 87-318 13-227 (243)
8 1fdr_A Flavodoxin reductase; f 99.9 1.3E-26 4.6E-31 224.1 20.0 208 87-318 6-222 (248)
9 3jqq_A Ferredoxin NADP reducta 99.9 3.9E-27 1.3E-31 236.3 16.5 211 88-317 18-293 (316)
10 4fk8_A Ferredoxin--NADP reduct 99.9 4.1E-27 1.4E-31 230.9 14.2 209 86-318 20-244 (271)
11 2r6h_A NADH:ubiquinone oxidore 99.9 2.8E-26 9.6E-31 227.0 20.1 210 87-318 11-271 (290)
12 2pia_A Phthalate dioxygenase r 99.9 7.7E-26 2.6E-30 227.4 22.9 146 87-254 10-161 (321)
13 1krh_A Benzoate 1,2-dioxygenas 99.9 3E-26 1E-30 231.9 19.6 203 87-318 110-317 (338)
14 1umk_A B5R, NADH-cytochrome B5 99.9 1.2E-26 4.1E-31 227.9 16.1 207 87-315 18-255 (275)
15 1fnb_A Ferredoxin-NADP+ reduct 99.9 1.5E-25 5.2E-30 224.5 21.8 213 88-317 40-281 (314)
16 2qdx_A Ferredoxin reductase; o 99.9 7.1E-26 2.4E-30 220.3 17.1 210 87-318 5-228 (257)
17 2bmw_A Ferredoxin--NADP reduct 99.9 2.5E-25 8.6E-30 221.8 20.7 215 87-317 23-271 (304)
18 2cnd_A NADH-dependent nitrate 99.9 1.2E-25 4.2E-30 220.1 17.3 210 87-316 14-250 (270)
19 2bgi_A Ferredoxin-NADP(H) redu 99.9 2.1E-25 7.2E-30 219.0 17.8 210 87-318 18-242 (272)
20 1gvh_A Flavohemoprotein; oxido 99.9 2.2E-25 7.4E-30 230.5 18.8 207 87-318 154-372 (396)
21 2b5o_A FNR, ferredoxin--NADP r 99.9 3.9E-25 1.3E-29 228.8 20.6 214 87-317 124-369 (402)
22 1cqx_A Flavohemoprotein; globi 99.9 6.6E-25 2.3E-29 227.3 20.8 206 87-318 156-378 (403)
23 1ep3_B Dihydroorotate dehydrog 99.9 8E-25 2.7E-29 213.6 16.3 195 87-317 7-206 (262)
24 2rc5_A Ferredoxin-NADP reducta 99.9 2.6E-24 8.9E-29 215.5 18.2 185 87-289 23-251 (314)
25 3a1f_A Cytochrome B-245 heavy 99.9 3.7E-24 1.3E-28 197.2 12.6 182 181-487 1-186 (186)
26 1ddg_A Sulfite reductase (NADP 99.8 7.8E-21 2.7E-25 194.4 13.2 172 112-307 145-328 (374)
27 2gpj_A Siderophore-interacting 99.8 8.4E-19 2.9E-23 170.0 14.0 189 87-318 10-207 (252)
28 4dql_A Bifunctional P-450/NADP 99.8 3.2E-18 1.1E-22 176.0 15.8 178 111-310 155-348 (393)
29 2qtl_A MSR;, methionine syntha 99.8 4.6E-18 1.6E-22 181.2 14.0 188 115-309 278-494 (539)
30 1f20_A Nitric-oxide synthase; 99.7 1.7E-17 5.7E-22 173.0 14.1 172 129-318 208-397 (435)
31 1tll_A Nitric-oxide synthase, 99.7 1.7E-17 5.9E-22 182.0 9.9 183 115-318 418-618 (688)
32 2bpo_A CPR, P450R, NADPH-cytoc 99.7 2.6E-17 8.8E-22 180.6 11.0 188 113-309 414-638 (682)
33 3qfs_A CPR, P450R, NADPH--cyto 99.7 1.7E-16 5.7E-21 165.7 13.1 172 127-309 230-413 (458)
34 3qe2_A CPR, P450R, NADPH--cyto 99.7 4.1E-16 1.4E-20 169.2 13.6 173 128-317 391-580 (618)
35 3lrx_A Putative hydrogenase; a 99.5 5.1E-15 1.7E-19 133.0 7.3 122 177-318 3-129 (158)
36 3lyu_A Putative hydrogenase; t 99.5 1.1E-14 3.7E-19 128.5 8.1 118 181-318 3-124 (142)
37 4eh1_A Flavohemoprotein; struc 92.9 0.044 1.5E-06 51.3 2.6 37 424-466 188-224 (243)
38 3lyu_A Putative hydrogenase; t 92.4 0.056 1.9E-06 46.6 2.3 22 445-466 110-131 (142)
39 3lrx_A Putative hydrogenase; a 91.5 0.086 2.9E-06 46.2 2.6 22 445-466 115-136 (158)
40 4fk8_A Ferredoxin--NADP reduct 90.7 0.14 4.7E-06 48.8 3.4 26 441-466 226-251 (271)
41 1qfj_A Protein (flavin reducta 90.7 0.11 3.8E-06 48.1 2.6 24 442-465 193-217 (232)
42 1tvc_A Methane monooxygenase c 90.5 0.16 5.3E-06 47.8 3.5 24 443-466 210-233 (250)
43 2r6h_A NADH:ubiquinone oxidore 90.5 0.17 5.9E-06 48.5 3.9 25 442-466 254-278 (290)
44 3jqq_A Ferredoxin NADP reducta 89.9 0.14 4.6E-06 50.3 2.6 25 442-466 277-301 (316)
45 3lo8_A Ferredoxin--NADP reduct 89.2 0.19 6.6E-06 48.9 3.1 44 423-466 240-286 (311)
46 2gpj_A Siderophore-interacting 89.2 0.16 5.4E-06 48.1 2.4 22 442-463 190-211 (252)
47 3vo2_A Putative uncharacterize 88.7 0.29 1E-05 47.7 4.0 26 441-466 260-285 (310)
48 1gvh_A Flavohemoprotein; oxido 88.5 0.25 8.4E-06 49.9 3.4 24 443-466 356-379 (396)
49 1cqx_A Flavohemoprotein; globi 87.6 0.28 9.6E-06 49.6 3.1 39 424-466 347-385 (403)
50 2eix_A NADH-cytochrome B5 redu 87.4 0.38 1.3E-05 44.7 3.8 41 424-466 194-234 (243)
51 1krh_A Benzoate 1,2-dioxygenas 86.5 0.32 1.1E-05 47.9 2.8 24 443-466 301-324 (338)
52 2qdx_A Ferredoxin reductase; o 86.0 0.48 1.7E-05 44.5 3.7 25 442-466 211-235 (257)
53 2bmw_A Ferredoxin--NADP reduct 85.9 0.69 2.4E-05 44.7 4.9 42 423-464 232-277 (304)
54 2b5o_A FNR, ferredoxin--NADP r 84.7 0.79 2.7E-05 46.5 4.7 43 423-465 330-376 (402)
55 2bgi_A Ferredoxin-NADP(H) redu 84.6 0.62 2.1E-05 44.3 3.8 24 442-465 225-248 (272)
56 1fdr_A Flavodoxin reductase; f 84.0 0.77 2.6E-05 42.8 4.0 24 442-465 205-229 (248)
57 1fnb_A Ferredoxin-NADP+ reduct 83.8 0.77 2.6E-05 44.6 4.1 24 442-465 265-288 (314)
58 1umk_A B5R, NADH-cytochrome B5 76.2 1 3.5E-05 42.6 2.0 24 442-465 241-265 (275)
59 1ep3_B Dihydroorotate dehydrog 71.0 2 6.9E-05 40.4 2.7 34 427-465 179-212 (262)
60 1f20_A Nitric-oxide synthase; 67.7 1.9 6.7E-05 44.0 1.9 38 88-125 33-77 (435)
61 2rc5_A Ferredoxin-NADP reducta 59.9 6.4 0.00022 37.9 3.9 20 446-465 269-289 (314)
62 1ddg_A Sulfite reductase (NADP 58.3 4.1 0.00014 40.7 2.2 38 88-125 14-57 (374)
63 2cnd_A NADH-dependent nitrate 56.7 4.1 0.00014 38.2 1.8 39 424-464 219-258 (270)
64 3s2u_A UDP-N-acetylglucosamine 56.6 8 0.00027 38.1 4.0 26 198-223 3-30 (365)
65 4dql_A Bifunctional P-450/NADP 54.4 5 0.00017 40.3 2.1 38 88-125 9-51 (393)
66 1tll_A Nitric-oxide synthase, 53.3 4.3 0.00015 44.0 1.5 38 88-125 254-298 (688)
67 2qtl_A MSR;, methionine syntha 44.9 8.2 0.00028 40.5 2.0 39 88-126 117-161 (539)
68 2bpo_A CPR, P450R, NADPH-cytoc 42.7 9.7 0.00033 41.2 2.2 21 444-464 630-651 (682)
69 3qfs_A CPR, P450R, NADPH--cyto 41.7 9.5 0.00032 39.2 1.8 38 88-125 65-107 (458)
70 3qe2_A CPR, P450R, NADPH--cyto 40.0 10 0.00035 40.5 1.8 37 89-125 226-267 (618)
No 1
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=99.96 E-value=8.2e-28 Score=230.27 Aligned_cols=205 Identities=14% Similarity=0.140 Sum_probs=159.2
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQM 164 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~~ 164 (489)
..++++++.+++++.++++..+..+.|+||||+.|.+|. .++|||||+|.|. +++.++|+||.. |++|+++.+.
T Consensus 4 ~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGq~v~l~~~~---~~~R~ySi~s~~~-~~~~l~l~i~~~~~G~~s~~~~~~ 79 (232)
T 1qfj_A 4 SCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDE---RDKRPFSMASTPD-EKGFIELHIGASEINLYAKAVMDR 79 (232)
T ss_dssp EEEEEEEEESSSSCEEEEEEESSCCCCCTTCEEEEESSS---SCEEEEECCSCTT-STTCEEEEEC------CCHHHHHH
T ss_pred EEEEEEEEecCCCEEEEEEecCCCCCcCCCCEEEEECCC---CceeeeecCCCCC-CCCcEEEEEEEccCCchhHHHHHh
Confidence 457888899999999999987777899999999999986 4899999999985 457899999984 5688887776
Q ss_pred HHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcc
Q 011270 165 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ 244 (489)
Q Consensus 165 ~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~ 244 (489)
++ +|+.+.|+||+|.+..+...+++++|||||+||||++++++++..++ ...+++|+|++|+.+
T Consensus 80 l~----------~Gd~v~v~gP~G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~------~~~~v~l~~~~r~~~ 143 (232)
T 1qfj_A 80 IL----------KDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARN------PNRDITIYWGGREEQ 143 (232)
T ss_dssp HH----------HHSEEEEEEEECSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC------TTCCEEEEEEESSGG
T ss_pred CC----------CCCEEEEeCCccceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC------CCCcEEEEEeeCCHH
Confidence 66 58999999999998765445789999999999999999999998752 347899999999999
Q ss_pred hhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 245 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 245 ~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
++.+.+++.+...+ ..+++++.+++++++.+.+.+|++++....+. .......+++|| ++.|+.++.
T Consensus 144 ~~~~~~el~~l~~~----~~~~~~~~~~s~~~~~~~g~~g~v~~~~~~~~-~~~~~~~vyvCG--p~~m~~~v~ 210 (232)
T 1qfj_A 144 HLYDLCELEALSLK----HPGLQVVPVVEQPEAGWRGRTGTVLTAVLQDH-GTLAEHDIYIAG--RFEMAKIAR 210 (232)
T ss_dssp GCTTHHHHHHHHHH----CTTEEEEEEESSCCTTCCSEESCHHHHHHHHC-SCCTTCEEEEES--CHHHHHHHH
T ss_pred HhhhHHHHHHHHHH----CCCeEEEEEEcCCCCCcCCceeeHHHHHHHhc-CCccccEEEEEC--CHHHHHHHH
Confidence 99988888665332 24789998899887777777888876554432 111233445555 555666654
No 2
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=99.95 E-value=1.3e-27 Score=231.55 Aligned_cols=206 Identities=17% Similarity=0.272 Sum_probs=161.6
Q ss_pred ceeEEEEEEeCCCeEEEEeec-C-C----CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCcc
Q 011270 87 ETCILSARVFPSKAIELILPK-H-A----GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWT 158 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~-~-~----~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T 158 (489)
..++++++.+++++.++++.. + . .+.|+||||+.|.+|.. .++|||||+|.|. +++.++|+||.. |.+|
T Consensus 12 ~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~-~~~~l~i~vk~~~~G~~s 88 (250)
T 1tvc_A 12 EAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGT--DVSRSYSPANLPN-PEGRLEFLIRVLPEGRFS 88 (250)
T ss_dssp EEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTSC--SSSEEECCBCCSS-SSCCEEEEECCCTTSSSH
T ss_pred EEEEEEEEEcCCCeEEEEEEecCCCCcccccCcCCCcEEEEEeCCC--ccccccccCCCCC-CCCeEEEEEEECCCCCch
Confidence 356778888899999999987 5 4 57899999999999863 4889999999985 467899999996 9999
Q ss_pred HHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEE
Q 011270 159 SSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIY 238 (489)
Q Consensus 159 ~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw 238 (489)
++|++.++ +|+.+.|+||||.+..+...+++++|||||+||||++++++++...+ ...+++|+|
T Consensus 89 ~~l~~~l~----------~Gd~v~v~gP~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~------~~~~v~l~~ 152 (250)
T 1tvc_A 89 DYLRNDAR----------VGQVLSVKGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT------APNETRIYF 152 (250)
T ss_dssp HHHHHHSS----------SSSEEEEEEEECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT------CCSCEEEEE
T ss_pred HHHHhcCC----------CCCEEEEEcCccccccCccCCceEEEEEeccCHHHHHHHHHHHHhcC------CCceEEEEE
Confidence 99986554 58999999999998765445689999999999999999999998752 347899999
Q ss_pred EeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhc-CCCCceEEecCCcHHHHHHH
Q 011270 239 VIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRF-GTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 239 ~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~~v~g~g~~~~~aav 317 (489)
++|+.+++.+.+++.++..+ ..++++++++|++++.+.+.+|++++.... .... .....+|+|| ++.|+.++
T Consensus 153 ~~r~~~~~~~~~el~~l~~~----~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~-~~~~~~~~~~vyvCG--p~~m~~~v 225 (250)
T 1tvc_A 153 GVNTEPELFYIDELKSLERS----MRNLTVKACVWHPSGDWEGEQGSPIDALRE-DLESSDANPDIYLCG--PPGMIDAA 225 (250)
T ss_dssp ECSSSTTCCCHHHHHHHHHH----SSSCEEEECCSSCSSCCSSSSSSSSHHHHH-HHHHSSSSSEEEEES--SHHHHHHH
T ss_pred EeCCHHHhhhHHHHHHHHHh----CCCeEEEEEeccCCCCcCCccceehHHHHh-hhhcccCCcEEEEeC--CHHHHHHH
Confidence 99999999888888665322 256888888998766677778888766543 2222 2334455555 45566655
Q ss_pred H
Q 011270 318 V 318 (489)
Q Consensus 318 ~ 318 (489)
.
T Consensus 226 ~ 226 (250)
T 1tvc_A 226 C 226 (250)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=99.95 E-value=2.2e-27 Score=237.56 Aligned_cols=213 Identities=17% Similarity=0.229 Sum_probs=161.1
Q ss_pred eeEEEEEEeCCC-----eEEEEeecCCCCcccCCeEEEEecCCCC----CcceeeeEEeecCCC---CCCeEEEEEEeC-
Q 011270 88 TCILSARVFPSK-----AIELILPKHAGLKFTPTSVIFMKIPSIS----KFQWHSFSITSSSSV---DDQTMSLIVKCD- 154 (489)
Q Consensus 88 ~~vv~~~~~~~~-----~~~l~~~~~~~~~~~pGQ~v~l~~p~~s----~~~~hPFSIas~p~~---~~~~l~l~Ik~~- 154 (489)
.++++++.++++ +.++++..+..+.|+||||++|.+|..+ ++++|||||+|+|.. +++.++|+||..
T Consensus 36 ~~V~~~~~l~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~ 115 (310)
T 3vo2_A 36 GRCLSNTRITGDDAPGETWHMVFSTEGEIPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLV 115 (310)
T ss_dssp EEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEECCE
T ss_pred EEEEEEEEccCCCCCccEEEEEEeCCCCCcccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEEEEEE
Confidence 567888888876 9999998777789999999999998753 346899999999853 467899999974
Q ss_pred ----------CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCC-CCCCCCeEEEEEeCCChhhHHHHHHHHHHhh
Q 011270 155 ----------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATM-DFLRYDSLLLVAGGIGITPFLSILQEIASAQ 223 (489)
Q Consensus 155 ----------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~-~~~~~~~vvlIAGGiGITP~lsil~~l~~~~ 223 (489)
|.+|+.|++ ++ +|+.|.|+||||.+.. +...+++++|||||+||||+++++++++.+.
T Consensus 116 ~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~ 184 (310)
T 3vo2_A 116 YTNDQGEIVKGVCSNFLCD-LK----------PGADVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEE 184 (310)
T ss_dssp EECTTSCEEECHHHHHHHT-CC----------TTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSC
T ss_pred eccCCCCcCCcchhhHHhc-CC----------CCCEEEEEeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhh
Confidence 889999987 33 5899999999998753 3346789999999999999999999998642
Q ss_pred cccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHh--h-h-c-C
Q 011270 224 SNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRA--V-R-F-G 298 (489)
Q Consensus 224 ~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~--~-~-~-~ 298 (489)
.......+++.|+|++|+.+++.|.+++.++..+ ...++++++++|+++..+.+.++++++...... + . . .
T Consensus 185 -~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~---~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l~~ 260 (310)
T 3vo2_A 185 -HEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEM---APDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLKK 260 (310)
T ss_dssp -CTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHH---CTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTS
T ss_pred -cccccCCCcEEEEEEecChhhcccHHHHHHHHHh---CCCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhccc
Confidence 1111224789999999999999999998765432 124789999999998777666666665443221 1 1 1 2
Q ss_pred CCCceEEecCCcHHHHHHH
Q 011270 299 TQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 299 ~~~~~~v~g~g~~~~~aav 317 (489)
+...+|+|||. .|+.++
T Consensus 261 ~~~~vyvCGp~--~M~~~v 277 (310)
T 3vo2_A 261 DNTYVYMCGLK--GMEKGI 277 (310)
T ss_dssp TTEEEEEEEST--THHHHH
T ss_pred CCcEEEEeCCH--HHHHHH
Confidence 24556667665 455554
No 4
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=99.95 E-value=3e-27 Score=244.64 Aligned_cols=166 Identities=17% Similarity=0.224 Sum_probs=135.4
Q ss_pred ceeEEEEEEeCCCeEEEEeecCC--CC-----cccCCeEEEEecC----CCCCcceeeeEEeecCCCCCCeEEEEEEe--
Q 011270 87 ETCILSARVFPSKAIELILPKHA--GL-----KFTPTSVIFMKIP----SISKFQWHSFSITSSSSVDDQTMSLIVKC-- 153 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~--~~-----~~~pGQ~v~l~~p----~~s~~~~hPFSIas~p~~~~~~l~l~Ik~-- 153 (489)
..+|++++.+++++.++++..+. ++ .|+||||+.|+++ +.+..++|||||++.|. ++.++|+||.
T Consensus 151 ~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~--~~~~~i~Vk~~~ 228 (399)
T 4g1v_A 151 PFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSAST--KNGLRFAVKMEA 228 (399)
T ss_dssp EEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC--TTCEEEEEECCC
T ss_pred EEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCCCCccceeeeecccCCCC--CCeEEEEEEecc
Confidence 46788999999999999997653 33 7999999999974 43446899999999984 5789999998
Q ss_pred ------CCCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCC----CCCeEEEEEeCCChhhHHHHHHHHHHhh
Q 011270 154 ------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFL----RYDSLLLVAGGIGITPFLSILQEIASAQ 223 (489)
Q Consensus 154 ------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~----~~~~vvlIAGGiGITP~lsil~~l~~~~ 223 (489)
.|.+|++|++.++ +|+.+.|.||+|.+..+.. .++++||||||+||||+++|++++..++
T Consensus 229 ~~~~~~~G~~S~~L~~~l~----------~Gd~v~v~gP~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~ 298 (399)
T 4g1v_A 229 ARENFPAGLVSEYLHKDAK----------VGDEIKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCN 298 (399)
T ss_dssp CBTTBCCCHHHHHHHHTCC----------TTCEEEEEEEECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCEehhHHHhCCC----------CCCEEEEEecccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcC
Confidence 5778999986554 5999999999999876554 5789999999999999999999998763
Q ss_pred cccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeC
Q 011270 224 SNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQ 274 (489)
Q Consensus 224 ~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr 274 (489)
..++++++|++|+.+++.+.+++.+... ...++++++++++
T Consensus 299 ------~~~~v~l~~~~r~~~~~~~~~el~~l~~----~~~~~~~~~~~s~ 339 (399)
T 4g1v_A 299 ------PNRPIYWIQSSYDEKTQAFKKHVDELLA----ECANVDKIIVHTD 339 (399)
T ss_dssp ------TTSCEEEEEEESSSTTSTTHHHHHHHHT----TCSSEEEEEEETT
T ss_pred ------CCCCEEEEEecCCHHHhhhHHHHHHHHH----hCCCcEEEEEEeC
Confidence 3478999999999999999888866542 2345677666654
No 5
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=99.95 E-value=2.1e-27 Score=228.96 Aligned_cols=202 Identities=17% Similarity=0.228 Sum_probs=157.7
Q ss_pred CceeEEEEEEeCCCeEEEEeecCC---CCcccCCeEEEEecCCCCC--cceeeeEEeecCCCCCCeEEEEEEeC------
Q 011270 86 PETCILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSISK--FQWHSFSITSSSSVDDQTMSLIVKCD------ 154 (489)
Q Consensus 86 ~~~~vv~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~p~~s~--~~~hPFSIas~p~~~~~~l~l~Ik~~------ 154 (489)
+..++++++.+++++.++++..+. ...|+||||++|.+|..+. .++|||||+|.| +++.++|+||..
T Consensus 4 ~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~--~~~~~~i~vk~~~~~~~~ 81 (243)
T 4eh1_A 4 RTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGIEVTPEGSDYREIRQYSLSHAS--NGREYRISVKREGVGSDN 81 (243)
T ss_dssp EEEEEEEEEECSSSEEEEEEEESSCSCCCCCCTTCEEEEEECCSSCSSCEEEEEEBCSCC--CSSCEEEEEECTTTTSSS
T ss_pred EEEEEEEEEEcCCCeEEEEEEeCCCCcCCCcCCCCEEEEEEecCCCccccceeeEeccCC--CCCeEEEEEEEeecCCCC
Confidence 356788999999999999998654 3689999999999986543 378999999987 457899999998
Q ss_pred -CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCce
Q 011270 155 -GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSK 233 (489)
Q Consensus 155 -G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~ 233 (489)
|.+|++|++.++ +|+++.|+||||.+..+ ..+++++|||||+||||++++++++..++ ..+
T Consensus 82 ~G~~S~~l~~~l~----------~G~~v~v~gP~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~------~~~- 143 (243)
T 4eh1_A 82 PGLVSHYLHNNVK----------VGDSVKLYAPAGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQN------KSG- 143 (243)
T ss_dssp CCHHHHHHHHHCC----------TTCEEEEEEEECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTT------CCS-
T ss_pred CCeehhHHHhcCC----------CCCEEEEEccCcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcC------CCe-
Confidence 889999987655 58999999999998766 67899999999999999999999998753 224
Q ss_pred EEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHH
Q 011270 234 VQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIW 313 (489)
Q Consensus 234 i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~ 313 (489)
++++|++|+.+++.+.+++.+...+ .+++++++++++++++. .+|++++..+ . .. .....++.||++.|
T Consensus 144 v~l~~~~r~~~~~~~~~el~~l~~~-----~~~~~~~~~s~~~~~~~-~~g~~~~~~~--~--~~-~~~~~vyvCGp~~m 212 (243)
T 4eh1_A 144 VTYLYACNSAKEHTFAQETAQLIAQ-----QGWMQQVWYRDESADDV-LQGEMQLAEL--I--LP-IEDGDFYLCGPIGF 212 (243)
T ss_dssp EEEEEEESSGGGCTTHHHHHHHHHH-----HTCEEEEEESSCCCTTC-EESSCCCTTS--C--CC-TTTCEEEEEECHHH
T ss_pred EEEEEEeCChhhhhHHHHHHHHHHh-----CCeEEEEEEccCCCccc-ccCCccHHHe--e--cc-CCCcEEEEECCHHH
Confidence 9999999999999999888765432 27788889988765443 6677776544 1 11 13344445555556
Q ss_pred HHHHH
Q 011270 314 MAALV 318 (489)
Q Consensus 314 ~aav~ 318 (489)
+.++.
T Consensus 213 ~~~v~ 217 (243)
T 4eh1_A 213 MQYVV 217 (243)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 6
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=99.95 E-value=2.5e-27 Score=237.11 Aligned_cols=214 Identities=15% Similarity=0.200 Sum_probs=158.0
Q ss_pred ceeEEEEEEeC-----CCeEEEEeecCCCCcccCCeEEEEecCCCC------CcceeeeEEeecCCC---CCCeEEEEEE
Q 011270 87 ETCILSARVFP-----SKAIELILPKHAGLKFTPTSVIFMKIPSIS------KFQWHSFSITSSSSV---DDQTMSLIVK 152 (489)
Q Consensus 87 ~~~vv~~~~~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s------~~~~hPFSIas~p~~---~~~~l~l~Ik 152 (489)
..+|++++.++ ++++++++..+..+.|+||||++|.+|..+ .+++|||||+|+|.. +.+.++|+||
T Consensus 30 ~~~V~~~~~~t~~~~~~~v~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk 109 (311)
T 3lo8_A 30 TATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVR 109 (311)
T ss_dssp EEEEEEEEECSCTTSSSCEEEEEEECTTSSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEE
T ss_pred EEEEEeeEeccCCCCCCccEEEEEeCCCCCcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEE
Confidence 46788999998 899999999887899999999999999752 358999999999853 2478999999
Q ss_pred eC---------------CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCC--CCCCeEEEEEeCCChhhHHHH
Q 011270 153 CD---------------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDF--LRYDSLLLVAGGIGITPFLSI 215 (489)
Q Consensus 153 ~~---------------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~--~~~~~vvlIAGGiGITP~lsi 215 (489)
.. |.+|+.|++ ++ +|+.+.|+||||.+.... ..++++||||||+||||++++
T Consensus 110 ~~~~~~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~ 178 (311)
T 3lo8_A 110 RAVYYDPETGKEDPSKNGVCSNFLCN-SK----------PGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGY 178 (311)
T ss_dssp CCCCCCTTTCCCCGGGSCHHHHHHHT-CC----------TTCEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHH
T ss_pred EEEecccccCcCCcCCCCchhhHHhc-CC----------CcCEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHH
Confidence 64 889999987 33 589999999999876433 367899999999999999999
Q ss_pred HHHHHHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHh-
Q 011270 216 LQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRA- 294 (489)
Q Consensus 216 l~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~- 294 (489)
+++++.+.. ......+++.|+|++|+.+++.+.+++.++..+ ...++++++++|+++..+.+.++++++......
T Consensus 179 l~~~~~~~~-~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~---~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~ 254 (311)
T 3lo8_A 179 LRRMFMEDV-PNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQ---YPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSD 254 (311)
T ss_dssp HHHHHTEEC-TTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHH---CTTTEEEEEEETTTC-------CCHHHHHHHTHH
T ss_pred HHHHHHhcc-ccccCCCCEEEEEecCChHHhhHHHHHHHHHHh---CCCcEEEEEEECCCCcccCCCcceehHHHHHHHH
Confidence 999986531 111123689999999999999999988765432 124789999999988776666677665443221
Q ss_pred -h-h-cCCCCceEEecCCcHHHHHHH
Q 011270 295 -V-R-FGTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 295 -~-~-~~~~~~~~v~g~g~~~~~aav 317 (489)
+ . ......+++|||. .||.++
T Consensus 255 ~~~~~~~~~~~vyvCGp~--~m~~~v 278 (311)
T 3lo8_A 255 EIFKLLDGGAHIYFCGLK--GMMPGI 278 (311)
T ss_dssp HHHHHHHTTCEEEEEECG--GGHHHH
T ss_pred HHHHhhcCCcEEEEECCH--HHHHHH
Confidence 1 1 1234566777765 455544
No 7
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=99.95 E-value=3.2e-27 Score=227.73 Aligned_cols=210 Identities=13% Similarity=0.153 Sum_probs=161.2
Q ss_pred ceeEEEEEEeCCCeEEEEeecCC---CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSL 161 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L 161 (489)
..++++++.+++++.++++..+. .+.|+||||+.|.+|..+..++|||||+|.|. +++.++|+||.. |.+|++|
T Consensus 13 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~-~~~~~~l~vk~~~~G~~S~~l 91 (243)
T 2eix_A 13 KFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATVDGKEIYRPYTPVSSDD-EKGYFDLIIKVYEKGQMSQYI 91 (243)
T ss_dssp EEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTT-CCSEEEEEEECCTTCHHHHHH
T ss_pred EEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEEEeeCCCEEEeeeeecCCCC-CCCEEEEEEEEcCCCCcchHh
Confidence 46788999999999888886553 46899999999999865556899999999875 568999999985 8899888
Q ss_pred HHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeC
Q 011270 162 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 241 (489)
Q Consensus 162 ~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r 241 (489)
.+ ++ +|+.+.|.||+|.+..+...+++++|||||+||||++++++++..+. ....+++|+|++|
T Consensus 92 ~~-l~----------~Gd~v~v~gP~G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~-----~~~~~v~l~~~~r 155 (243)
T 2eix_A 92 DH-LN----------PGDFLQVRGPKGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNP-----KEKTIINLIFANV 155 (243)
T ss_dssp HT-CC----------TTCEEEEEEEECSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCT-----TCCCEEEEEEEEE
T ss_pred hc-CC----------CCCEEEEECCeEEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCC-----CCCcEEEEEEEcC
Confidence 53 32 58999999999998665455789999999999999999999998631 1247899999999
Q ss_pred CcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 242 SSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 242 ~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
+.+++.+.+++.+...+ ..++++++.++++++.+.+.+|++++..+.+.+... .....++.||++.|+.++.
T Consensus 156 ~~~~~~~~~el~~l~~~----~~~~~~~~~~s~~~~~~~g~~g~v~~~~l~~~~~~~-~~~~~vy~CGp~~m~~~v~ 227 (243)
T 2eix_A 156 NEDDILLRTELDDMAKK----YSNFKVYYVLNNPPAGWTGGVGFVSADMIKQHFSPP-SSDIKVMMCGPPMMNKAMQ 227 (243)
T ss_dssp EGGGCTTHHHHHHHHHH----CTTEEEEEEEEECCTTCCSEESSCCHHHHHHHSCCT-TSSEEEEEESSHHHHHHHH
T ss_pred CHHHhhHHHHHHHHHHH----CCCeEEEEEeCCCCccccCcCCccCHHHHHHhcCCC-CCCeEEEEECCHHHHHHHH
Confidence 99999888888655332 247889999998776677778888865544443322 2233444455555666654
No 8
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=99.95 E-value=1.3e-26 Score=224.07 Aligned_cols=208 Identities=13% Similarity=0.137 Sum_probs=155.2
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQM 164 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~~ 164 (489)
..++++++.+++++.++++. ++.+.|+||||+.|.+|..+..++|||||+|.|. ++.++|+||.. |.+|++|++
T Consensus 6 ~~~V~~~~~~~~~~~~l~l~-~~~~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~--~~~l~~~v~~~~~G~~s~~l~~- 81 (248)
T 1fdr_A 6 TGKVTKVQNWTDALFSLTVH-APVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPD--NPDLEFYLVTVPDGKLSPRLAA- 81 (248)
T ss_dssp EEEEEEEEECSSSEEEEEEE-CCCCCCCTTCEEEEEECC---CEEEEEECCSCTT--CSSEEEEEECCTTCSSHHHHHT-
T ss_pred EEEEEEEEEcCCCEEEEEEe-CCCCCcCCCCcEEEEccCCCCeeeeeecccCCCC--CCcEEEEEEEeCCCchhhHHHh-
Confidence 46788899999999999996 5568899999999999976667899999999874 47899999986 999999974
Q ss_pred HHhcccCCcCcCcceeEEEe-CCCCCCCCCCC-CCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC
Q 011270 165 IHAELDSDADQMRCIPVAIE-GPYGPATMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 242 (489)
Q Consensus 165 ~~~~~~~~~~~~~g~~v~v~-GPyG~~~~~~~-~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~ 242 (489)
++ +|+.+.|. ||+|.+..+.. ++++++|||||+||||++++++++...+ ...+++|+|++|+
T Consensus 82 l~----------~Gd~v~v~~gP~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~------~~~~v~l~~~~r~ 145 (248)
T 1fdr_A 82 LK----------PGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD------RFKNLVLVHAARY 145 (248)
T ss_dssp CC----------TTCEEEEESSCBCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT------TCSEEEEEEEESS
T ss_pred CC----------CcCEEEEecCCcceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC------CCCcEEEEEEcCC
Confidence 33 58999999 99999765433 3789999999999999999999876431 2478999999999
Q ss_pred cchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhh----hc-CCCCceEEecCCcHHHHHHH
Q 011270 243 SQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAV----RF-GTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 243 ~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~----~~-~~~~~~~v~g~g~~~~~aav 317 (489)
.+++.+.+++.+...+ ...+++++.++|+++.. .+.+|++++....+.+ .. .+.....++.||++.|+.++
T Consensus 146 ~~~~~~~~el~~l~~~---~~~~~~~~~~~s~~~~~-~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp~~m~~~v 221 (248)
T 1fdr_A 146 AADLSYLPLMQELEKR---YEGKLRIQTVVSRETAA-GSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDT 221 (248)
T ss_dssp GGGCTTHHHHHHHHHH---TTTSEEEEEEESSSCCT-TEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECHHHHHHH
T ss_pred HHHhhHHHHHHHHHHh---CcCcEEEEEEEecCCCC-CCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCCHHHHHHH
Confidence 9999888888665322 12578888899987642 3356777765433221 11 12233444555555666665
Q ss_pred H
Q 011270 318 V 318 (489)
Q Consensus 318 ~ 318 (489)
.
T Consensus 222 ~ 222 (248)
T 1fdr_A 222 Q 222 (248)
T ss_dssp H
T ss_pred H
Confidence 4
No 9
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=99.95 E-value=3.9e-27 Score=236.31 Aligned_cols=211 Identities=14% Similarity=0.179 Sum_probs=156.8
Q ss_pred eeEEEEEEeC-----CCeEEEEeecCCCCcccCCeEEEEecCCCC----------------------------------C
Q 011270 88 TCILSARVFP-----SKAIELILPKHAGLKFTPTSVIFMKIPSIS----------------------------------K 128 (489)
Q Consensus 88 ~~vv~~~~~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s----------------------------------~ 128 (489)
.+|++++.+. +++.+|++..+..++|.||||+.|.+|..+ .
T Consensus 18 ~~v~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~g~ 97 (316)
T 3jqq_A 18 CKIVDKINLVRPNSPNEVYHLEINHNGLFKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHNNIALSHIKKQ 97 (316)
T ss_dssp EEEEEEEECSCTTCSCCEEEEEEECTTCCCCCTTCEEEECTTCC-----------------------------------C
T ss_pred EEEEeeEEccCCCCCCceEEEEEeCCCCcceecCcEeEEECCCcccccccccccccccccccccccccccccccccCCCc
Confidence 4678888875 789999998888899999999999998763 4
Q ss_pred cceeeeEEeecCCCCCCeEEEEEEeC--------------CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCC
Q 011270 129 FQWHSFSITSSSSVDDQTMSLIVKCD--------------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDF 194 (489)
Q Consensus 129 ~~~hPFSIas~p~~~~~~l~l~Ik~~--------------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~ 194 (489)
.++|||||+|+|. ++.++|+||.. |.+|+.|.+ ++ +|+.|.|+||||.+..+.
T Consensus 98 ~~~R~ySIaS~p~--~~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~gP~G~f~l~~ 164 (316)
T 3jqq_A 98 RCARLYSISSSNN--MENLSVAIKIHKYEQTENAPNITNYGYCSGFIKN-LK----------INDDIYLTGAHGYFNLPN 164 (316)
T ss_dssp CCCEEEEBCSCTT--SSSEEEEEECCBC---------CCBCHHHHHHHT-CC----------TTCEEEEEEEECCCCCCT
T ss_pred ccceeeecccCCC--CCeEEEEEEEEEecccccccCcCCCCchhHHHhh-CC----------CCCEEEEEecCCceEcCC
Confidence 6899999999984 47899999974 888998843 32 589999999999987654
Q ss_pred C---CCCeEEEEEeCCChhhHHHHHHHHHHhhcc----cCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceE
Q 011270 195 L---RYDSLLLVAGGIGITPFLSILQEIASAQSN----RKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLT 267 (489)
Q Consensus 195 ~---~~~~vvlIAGGiGITP~lsil~~l~~~~~~----~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~ 267 (489)
. ..+++|||||||||||++||++++...... ......++++|+|++|+.+++.+.+++.++..+ ...+++
T Consensus 165 ~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~---~~~~~~ 241 (316)
T 3jqq_A 165 DAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKM---YPNNIN 241 (316)
T ss_dssp THHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHH---CTTTEE
T ss_pred cccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHh---CCCcEE
Confidence 3 278999999999999999999999865311 011124789999999999999998888765432 124789
Q ss_pred EEEEEeCCCCCCcchhhhcchhhhhHhhh---c--CCCCceEEecCCcHHHHHHH
Q 011270 268 LKVFVTQEEQSSVTVREVLNDLSLVRAVR---F--GTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 268 v~~~vTr~~~~~~~~~g~v~~~~~~~~~~---~--~~~~~~~v~g~g~~~~~aav 317 (489)
+++++|+++ .+.+.+|++++........ . .+...+|+|||. .|+.++
T Consensus 242 ~~~~~s~~~-~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP~--~m~~~v 293 (316)
T 3jqq_A 242 IHYVFSYKQ-NSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKK--SIRYKV 293 (316)
T ss_dssp EEEEEGGGC-C---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEECS--THHHHH
T ss_pred EEEEECCCc-ccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCCH--HHHHHH
Confidence 999999984 4556667776655443211 1 134556666665 455554
No 10
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=99.94 E-value=4.1e-27 Score=230.86 Aligned_cols=209 Identities=20% Similarity=0.211 Sum_probs=154.1
Q ss_pred CceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHH
Q 011270 86 PETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQ 163 (489)
Q Consensus 86 ~~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~ 163 (489)
...++++++.+++++.++++..+..+.|+||||++|.+|..+..++|||||+|.| +++.++++|+.. |.+|++|.+
T Consensus 20 ~~~~V~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~--~~~~~~~~v~~~~~G~~s~~l~~ 97 (271)
T 4fk8_A 20 DTATVLSVHHWTDTLFSFTCTRDQALRFNNGEFTMVGLEVDGKPLTRAYSIVSPN--YEEHLEFFSIKVQNGPLTSRLQH 97 (271)
T ss_dssp EEEEEEEEEEEETTEEEEEECCCTTCCCCTTCEEEEEEEETTEEEEEEEECCSCT--TSSSEEEEEECCTTCTTHHHHTT
T ss_pred eeEEEEEEEEcCCCEEEEEEEcCCCCCcCCCCEEEEEccCCCceeeeeEeccCCC--CCCcEEEEEEEECCCchhhHHhc
Confidence 3577889999999999999988778899999999999997666789999999987 456899999986 999998853
Q ss_pred HHHhcccCCcCcCcceeEEEe-CCCCCCCCCC-CCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeC
Q 011270 164 MIHAELDSDADQMRCIPVAIE-GPYGPATMDF-LRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 241 (489)
Q Consensus 164 ~~~~~~~~~~~~~~g~~v~v~-GPyG~~~~~~-~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r 241 (489)
++ +|+.+.++ ||||.+..+. ..+++++|||||+||||++++++++.... ..++++|+|++|
T Consensus 98 -l~----------~Gd~v~v~~gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~------~~~~v~l~~~~r 160 (271)
T 4fk8_A 98 -LK----------VGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYE------RFDKVVLTHTCR 160 (271)
T ss_dssp -CC----------TTCEEEEESCCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHH------HCSEEEEEECCC
T ss_pred -CC----------CCCEEEEecCCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcC------CCCCEEEEEecC
Confidence 22 58999999 9999987543 36899999999999999999999987653 237899999999
Q ss_pred CcchhhhHHhHhHHhhhccCCC------cceEEEEEEeCCCCCCcchhhhcchhhhhHh----hhc--CCCCceEEecCC
Q 011270 242 SSQEICLLNSISPLLSNQQSKK------WHLTLKVFVTQEEQSSVTVREVLNDLSLVRA----VRF--GTQSNYAVNGLE 309 (489)
Q Consensus 242 ~~~~l~~~~~l~~~l~~~~~~~------~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~----~~~--~~~~~~~v~g~g 309 (489)
+.+++.+.+++.+...+. .. .++++.+.+++++. +.+|++++....+. +.. .......++.||
T Consensus 161 ~~~~~~~~~el~~l~~~~--~~~~~~~~~~~~~~~~~s~~~~---~~~G~v~~~~~~~~l~~~~~~~~~~~~~~~v~vCG 235 (271)
T 4fk8_A 161 LKGELAYMDYIKHDLPGH--EYLGDVIREKLVYYPTVTREEF---ENEGRITDLIASGKLFTDLDMPPFSPEQDRVMLCG 235 (271)
T ss_dssp SHHHHHHHHHHHTCCTTC--TTHHHHHHHHEEEEECC----------CCHHHHHHHHSHHHHHTTCCCCCTTTEEEEEEE
T ss_pred CHHHHhHHHHHHHHHHhC--ccccccccceEEEEEEecCCcc---ccccccChHHhcchhhhhcccccCCCCCCEEEEEC
Confidence 999999888876543211 00 25677777776543 45677776543321 111 122344555556
Q ss_pred cHHHHHHHH
Q 011270 310 SLIWMAALV 318 (489)
Q Consensus 310 ~~~~~aav~ 318 (489)
++.|+.++.
T Consensus 236 p~~m~~~v~ 244 (271)
T 4fk8_A 236 STAMLKDTT 244 (271)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666777664
No 11
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=99.94 E-value=2.8e-26 Score=226.96 Aligned_cols=210 Identities=15% Similarity=0.214 Sum_probs=159.8
Q ss_pred ceeEEEEEEeCCCeEEEEeecCC--CCcccCCeEEEEecCCC-----------------------------CCcceeeeE
Q 011270 87 ETCILSARVFPSKAIELILPKHA--GLKFTPTSVIFMKIPSI-----------------------------SKFQWHSFS 135 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~--~~~~~pGQ~v~l~~p~~-----------------------------s~~~~hPFS 135 (489)
..+|++++.+++++.++++..+. .+.|+||||+.|.+|.. +..++||||
T Consensus 11 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~R~yS 90 (290)
T 2r6h_A 11 ECEVLSNKNVSTFIKEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEETVRAYS 90 (290)
T ss_dssp EEEEEEEEESSSSEEEEEEECSTTCCCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECSCEEEEEE
T ss_pred EEEEEEeeecCCCeEEEEEEcCCCCccccCCCceEEEEcccccccccccccchhhcccccccccccccccCCCCcceeee
Confidence 46788999999999999998764 57899999999999852 346789999
Q ss_pred EeecCCCCCCeEEEEEEe-----------------CCCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCC
Q 011270 136 ITSSSSVDDQTMSLIVKC-----------------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYD 198 (489)
Q Consensus 136 Ias~p~~~~~~l~l~Ik~-----------------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~ 198 (489)
|+|.|. +++.++|+||. .|.+|++|++ ++ +|+.+.|.||+|.+..+ ...+
T Consensus 91 i~s~~~-~~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~-l~----------~Gd~v~v~gP~G~f~~~-~~~~ 157 (290)
T 2r6h_A 91 MANYPA-EGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFS-LK----------PGDKVMMSGPYGDFHIQ-DTDA 157 (290)
T ss_dssp CCSCTT-CCSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTT-CC----------TTCEEEEEEEECCCCCC-SSSC
T ss_pred ccCCCC-CCCEEEEEEEEeccccccccccccccCCCcchhhHHhc-CC----------CCCEEEEEecccCCcCC-CCCC
Confidence 999985 56799999996 4678888876 33 58999999999998754 4678
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCC--
Q 011270 199 SLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEE-- 276 (489)
Q Consensus 199 ~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~-- 276 (489)
++||||||+||||+++|+++++.+. ....+++|+|++|+.+++.+.+++.+...+ ..++++++++++++
T Consensus 158 ~~vliagGtGitP~~s~l~~~~~~~-----~~~~~v~l~~~~r~~~d~~~~~el~~l~~~----~~~~~~~~~~s~~~~~ 228 (290)
T 2r6h_A 158 EMLYIGGGAGMAPLRAQILHLFRTL-----KTGRKVSYWYGARSKNEIFYEEDFREIERE----FPNFKFHIALSDPQPE 228 (290)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHTS-----CCCSCEEEEEEESSGGGCCSHHHHHHHHHH----CTTEEEEEEESSCCGG
T ss_pred eEEEEECccCHHHHHHHHHHHHHhc-----CCCCcEEEEEEcCCHHHHHHHHHHHHHHHh----CCCeEEEEEEccCCcc
Confidence 9999999999999999999988642 123789999999999999888888665332 24688999999864
Q ss_pred CCCcchhhhcchhhhhHhhhc-CCCCceEEecCCcHHHHHHHH
Q 011270 277 QSSVTVREVLNDLSLVRAVRF-GTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 277 ~~~~~~~g~v~~~~~~~~~~~-~~~~~~~v~g~g~~~~~aav~ 318 (489)
+.|.+.+|++++..+.+.+.. .......++.||++.|+.++.
T Consensus 229 ~~~~g~~g~v~~~~~~~~l~~~~~~~~~~vyvCGp~~m~~~v~ 271 (290)
T 2r6h_A 229 DNWTGYVGFIHQVIYDNYLKDHDAPEDIEYYMCGPGPMANAVK 271 (290)
T ss_dssp GCCCSCBSCHHHHHHHHTTTTCSCGGGEEEEEECCHHHHHHHH
T ss_pred cCCCCeeEecCHHHHHhHHhhccCcCCcEEEEECCHHHHHHHH
Confidence 345566788876654443321 112344455555556776664
No 12
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.94 E-value=7.7e-26 Score=227.41 Aligned_cols=146 Identities=22% Similarity=0.352 Sum_probs=124.2
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCC---CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CC-ccHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GE-WTSS 160 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~-~T~~ 160 (489)
..++++++.+++++.++++..+.. ..|+||||+.|.+|.. ++|||||+|.|. +++.++|.||.. |. +|++
T Consensus 10 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~g---~~R~ySi~s~~~-~~~~l~i~Vk~~~~G~g~S~~ 85 (321)
T 2pia_A 10 RLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNG---SRRTYSLCNDSQ-ERNRYVIAVKRDSNGRGGSIS 85 (321)
T ss_dssp EEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECTTS---CEEEEECCSCTT-CCSEEEEEEECCTTSCSHHHH
T ss_pred EEEEEEEEEcCCCEEEEEEEcCCCCcCCCCCCCCEEEEECCCC---CcEEEEeCCCCC-CCCeEEEEEEEecCCcchhHH
Confidence 467889999999999999987653 3799999999999853 899999999885 567899999974 65 8999
Q ss_pred HHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEe
Q 011270 161 LYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVI 240 (489)
Q Consensus 161 L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~ 240 (489)
|++.++ +|+.+.|.||+|.+..+. .+++++|||||+||||+++|++++...+ ..+++|+|++
T Consensus 86 L~~~l~----------~Gd~v~v~gP~g~f~l~~-~~~~~vliagG~GItP~~s~l~~l~~~~-------~~~v~l~~~~ 147 (321)
T 2pia_A 86 FIDDTS----------EGDAVEVSLPRNEFPLDK-RAKSFILVAGGIGITPMLSMARQLRAEG-------LRSFRLYYLT 147 (321)
T ss_dssp HHHSCC----------TTCEEEECCCBCCSCCCT-TCSEEEEEEEGGGHHHHHHHHHHHHHHC-------SSEEEEEEEE
T ss_pred HHhcCC----------CCCEEEEeCCccccccCC-CCCCEEEEEecccHhHHHHHHHHHHHcC-------CCcEEEEEEE
Confidence 986554 589999999999986543 4789999999999999999999998752 2689999999
Q ss_pred CCcchhhhHHhHhH
Q 011270 241 KSSQEICLLNSISP 254 (489)
Q Consensus 241 r~~~~l~~~~~l~~ 254 (489)
|+.+++.+.+++.+
T Consensus 148 r~~~~~~~~~el~~ 161 (321)
T 2pia_A 148 RDPEGTAFFDELTS 161 (321)
T ss_dssp SCGGGCTTHHHHHS
T ss_pred CChhhhHHHHHHhc
Confidence 99999998888754
No 13
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.94 E-value=3e-26 Score=231.90 Aligned_cols=203 Identities=16% Similarity=0.255 Sum_probs=158.2
Q ss_pred ceeEEEEEEeCCCeEEEEeecCC---CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSL 161 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L 161 (489)
..++++++.+++++.++++..+. .+.|+||||+.|.+|.. .++|||||+|.|. ++.++|+||.. |.+|++|
T Consensus 110 ~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~--~~~R~ySi~s~~~--~~~l~~~vk~~~~G~~S~~L 185 (338)
T 1krh_A 110 EGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPGT--TETRSYSFSSQPG--NRLTGFVVRNVPQGKMSEYL 185 (338)
T ss_dssp EEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECTTS--SCEEEEECCSCTT--CSEEEEEEECCTTCHHHHHH
T ss_pred EEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEEcCCC--CccccccccCCCC--CCeEEEEEEEcCCCCchhhH
Confidence 35778888899999999998765 57899999999999864 4799999999874 67999999996 8899999
Q ss_pred HHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeC
Q 011270 162 YQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 241 (489)
Q Consensus 162 ~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r 241 (489)
++.++ +|+.+.|+||||.+..+.. .++++|||||+||||++++++++..++ ..++++|+|++|
T Consensus 186 ~~~l~----------~Gd~v~v~gP~G~f~~~~~-~~~~vliagGtGiaP~~s~l~~l~~~~------~~~~v~l~~~~r 248 (338)
T 1krh_A 186 SVQAK----------AGDKMSFTGPFGSFYLRDV-KRPVLMLAGGTGIAPFLSMLQVLEQKG------SEHPVRLVFGVT 248 (338)
T ss_dssp HTTCC----------TTCEEEEEEEECSCSCCCC-SSCEEEEEEGGGHHHHHHHHHHHHHHC------CSSCEEEEEEES
T ss_pred hhccC----------CCCEEEEECCccceEeCCC-CceEEEEEccccHhHHHHHHHHHHHcC------CCCeEEEEEEeC
Confidence 76544 5899999999999875433 489999999999999999999998753 247899999999
Q ss_pred CcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 242 SSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 242 ~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
+.+++.+.+++.++..+ ..+++++++++++++++. .+|++++....+.+.. .... ++.||++.|+.++.
T Consensus 249 ~~~d~~~~~el~~l~~~----~~~~~~~~~~s~~~~~~~-~~g~v~~~l~~~~~~~-~~~~--vy~CGp~~m~~~v~ 317 (338)
T 1krh_A 249 QDCDLVALEQLDALQQK----LPWFEYRTVVAHAESQHE-RKGYVTGHIEYDWLNG-GEVD--VYLCGPVPMVEAVR 317 (338)
T ss_dssp SGGGCCCHHHHHHHHHH----CTTEEEEEEETTCCSSSS-EESCSGGGCCGGGGGG-GCSE--EEEEEEHHHHHHHH
T ss_pred CHHHhhhHHHHHHHHHh----CCCeEEEEEEecCCCCCC-ccCccCHHHHHhhccc-CCcE--EEEECCHHHHHHHH
Confidence 99999888888665332 257899999998876654 5677776554333222 2333 44555556666654
No 14
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=99.94 E-value=1.2e-26 Score=227.93 Aligned_cols=207 Identities=14% Similarity=0.184 Sum_probs=158.2
Q ss_pred ceeEEEEEEeCCCeEEEEeecCC---CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC---------
Q 011270 87 ETCILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--------- 154 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--------- 154 (489)
..++++++.+++++.++++..+. .+.|+||||+.|.+|..+..++|||||+|.|. +++.++|+||..
T Consensus 18 ~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~-~~~~~~l~vk~~~~~~~~~~~ 96 (275)
T 1umk_A 18 PLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDD-DKGFVDLVIKVYFKDTHPKFP 96 (275)
T ss_dssp EEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEETTEEEEEEECCSSCTT-CCSEEEEEEECCCSSSBTTBT
T ss_pred EEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEeeCCcEEEeccccCCccC-CCCeEEEEEEEeccCcccccC
Confidence 46788999999999888887553 36899999999999866667899999999875 568999999976
Q ss_pred --CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCC--------CC--------CCCCeEEEEEeCCChhhHHHHH
Q 011270 155 --GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATM--------DF--------LRYDSLLLVAGGIGITPFLSIL 216 (489)
Q Consensus 155 --G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~--------~~--------~~~~~vvlIAGGiGITP~lsil 216 (489)
|.+|++|.+ ++ +|+.+.|+||||.+.. +. ...+++||||||+||||+++++
T Consensus 97 ~~G~~S~~L~~-l~----------~Gd~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l 165 (275)
T 1umk_A 97 AGGKMSQYLES-MQ----------IGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVI 165 (275)
T ss_dssp TCCHHHHHHHH-CC----------TTCEEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHH
T ss_pred CCChhHHHHhc-CC----------CCCEEEEEcCccceEecCCccccccccccccccccCCceEEEEecCccHhHHHHHH
Confidence 889999964 33 5899999999998632 11 2468999999999999999999
Q ss_pred HHHHHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhh
Q 011270 217 QEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVR 296 (489)
Q Consensus 217 ~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~ 296 (489)
+++..+. ....+++|+|++|+.+++.+.+++.++..+. ..++++++.++++++.|.+.+|++++..+.+.+.
T Consensus 166 ~~l~~~~-----~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~---~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~~l~ 237 (275)
T 1umk_A 166 RAIMKDP-----DDHTVCHLLFANQTEKDILLRPELEELRNKH---SARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLP 237 (275)
T ss_dssp HHHHTCT-----TCCCEEEEEEEESSGGGCTTHHHHHHHHHHC---TTTEEEEEEESSCCSSCSSEESSCCHHHHHHHSC
T ss_pred HHHHhCC-----CCCcEEEEEEEcCCHHHhhHHHHHHHHHHhC---cCcEEEEEEEcCCCccccCccCccCHHHHHHhcC
Confidence 9998641 1347899999999999999988887654321 1368888888887777777889998765554432
Q ss_pred cC-CCCceEEecCCcHHHHH
Q 011270 297 FG-TQSNYAVNGLESLIWMA 315 (489)
Q Consensus 297 ~~-~~~~~~v~g~g~~~~~a 315 (489)
.. +...+|+||+ +.||.
T Consensus 238 ~~~~~~~vyvCGp--~~m~~ 255 (275)
T 1umk_A 238 PPEEEPLVLMCGP--PPMIQ 255 (275)
T ss_dssp CGGGCCEEEEESC--HHHHH
T ss_pred CCCCCeEEEEECC--HHHHH
Confidence 22 2334555554 55555
No 15
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=99.94 E-value=1.5e-25 Score=224.51 Aligned_cols=213 Identities=15% Similarity=0.205 Sum_probs=157.6
Q ss_pred eeEEEEEEeCC-----CeEEEEeecCCCCcccCCeEEEEecCCC----CCcceeeeEEeecCCC---CCCeEEEEEEeC-
Q 011270 88 TCILSARVFPS-----KAIELILPKHAGLKFTPTSVIFMKIPSI----SKFQWHSFSITSSSSV---DDQTMSLIVKCD- 154 (489)
Q Consensus 88 ~~vv~~~~~~~-----~~~~l~~~~~~~~~~~pGQ~v~l~~p~~----s~~~~hPFSIas~p~~---~~~~l~l~Ik~~- 154 (489)
.+|++++.+++ ++.++++..+..+.|+||||+.|.+|.. .+.++|||||+|+|.. +++.++|+||..
T Consensus 40 ~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~ 119 (314)
T 1fnb_A 40 GRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLI 119 (314)
T ss_dssp EEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEEEECCE
T ss_pred EEEEEEEEecCCCCCCcEEEEEEecCCCCCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCCEEEEEEEEEE
Confidence 57888888886 8999999877678999999999999874 2357899999999853 257899999963
Q ss_pred ----------CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCC-CCCCCCeEEEEEeCCChhhHHHHHHHHHHhh
Q 011270 155 ----------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATM-DFLRYDSLLLVAGGIGITPFLSILQEIASAQ 223 (489)
Q Consensus 155 ----------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~-~~~~~~~vvlIAGGiGITP~lsil~~l~~~~ 223 (489)
|.+|++|++ ++ +|+.+.|+||+|.+.. +....+++||||||+||||+++|+++++...
T Consensus 120 y~~~~g~~~~G~~S~~L~~-l~----------~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~ 188 (314)
T 1fnb_A 120 YTNDAGETIKGVCSNFLCD-LK----------PGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEK 188 (314)
T ss_dssp EECTTSCEEECHHHHHHHH-CC----------TTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCC
T ss_pred eccCCCCcCCCchhhHhhc-CC----------CCCEEEEEeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhc
Confidence 778999987 33 5899999999998753 2234789999999999999999999998642
Q ss_pred cccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhH--hh-h-cC-
Q 011270 224 SNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVR--AV-R-FG- 298 (489)
Q Consensus 224 ~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~--~~-~-~~- 298 (489)
. .......+++|+|++|+.+++.+.+++.+...+ ...++++++++|++++.+.+.++++++..... .+ . ..
T Consensus 189 ~-~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~---~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~ 264 (314)
T 1fnb_A 189 H-DDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEK---APDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKK 264 (314)
T ss_dssp B-TTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHH---CTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTS
T ss_pred c-ccccCCCCEEEEEecCCHHHhhhHHHHHHHHHh---CCCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHhc
Confidence 1 111123689999999999999998888765432 12378999999998766655666666543321 11 1 11
Q ss_pred CCCceEEecCCcHHHHHHH
Q 011270 299 TQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 299 ~~~~~~v~g~g~~~~~aav 317 (489)
+...+|+|||. .|+.++
T Consensus 265 ~~~~vyvCGp~--~m~~~v 281 (314)
T 1fnb_A 265 DNTYVYMCGLK--GMEKGI 281 (314)
T ss_dssp TTEEEEEEECT--THHHHH
T ss_pred CCeEEEEECCH--HHHHHH
Confidence 24456677754 455554
No 16
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=99.93 E-value=7.1e-26 Score=220.30 Aligned_cols=210 Identities=19% Similarity=0.219 Sum_probs=155.9
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQM 164 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~~ 164 (489)
..+|++++.+++++.++++..+..+.|+||||+.|.+|..+..++|||||+|.|. ++.++|+||.. |.+|++|.+
T Consensus 5 ~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~--~~~~~~~i~~~~~G~~s~~l~~- 81 (257)
T 2qdx_A 5 TERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNY--EEHLEFFSIKVPDGPLTSRLQH- 81 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCTTCCCCTTCEEEEEEEETTEEEEEEEECCSCTT--SSEEEEEEECCTTCTTHHHHTT-
T ss_pred EEEEEEEEEcCCCeEEEEEeCCCCCccCCCCEEEEEecCCCCceeeeeEeecCCC--CCeEEEEEEEeCCCcchhHHHh-
Confidence 4678899999999999999887778999999999999876667899999999884 47899999986 889998863
Q ss_pred HHhcccCCcCcCcceeEEEe-CCCCCCCCCCC-CCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC
Q 011270 165 IHAELDSDADQMRCIPVAIE-GPYGPATMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS 242 (489)
Q Consensus 165 ~~~~~~~~~~~~~g~~v~v~-GPyG~~~~~~~-~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~ 242 (489)
++ +|+.+.|. ||||.+..+.. .+++++|||||+||||++++++++...+ ...+++|+|++|+
T Consensus 82 l~----------~Gd~v~v~~gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~------~~~~v~l~~~~r~ 145 (257)
T 2qdx_A 82 LK----------EGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYE------RYEKVILVHGVRW 145 (257)
T ss_dssp CC----------TTCEEEECSCCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHH------HCSEEEEEEEESS
T ss_pred CC----------CCCEEEEecCCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcC------CCCeEEEEEEcCC
Confidence 32 58999999 99999865433 3789999999999999999999987642 2368999999999
Q ss_pred cchhhhHHhHh-HHhhhccC-C--CcceEEEEEEeCCCCCCcchhhhcchhhhhHh----hhcC--CCCceEEecCCcHH
Q 011270 243 SQEICLLNSIS-PLLSNQQS-K--KWHLTLKVFVTQEEQSSVTVREVLNDLSLVRA----VRFG--TQSNYAVNGLESLI 312 (489)
Q Consensus 243 ~~~l~~~~~l~-~~l~~~~~-~--~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~----~~~~--~~~~~~v~g~g~~~ 312 (489)
.+++.+.+++. ++..+... + ..+++++..+|+++. +.+|++++....+. .... ......++.||++.
T Consensus 146 ~~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~~---~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~ 222 (257)
T 2qdx_A 146 VSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTREPF---RNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPS 222 (257)
T ss_dssp GGGCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEESSSCC---SSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEECHH
T ss_pred HHHhHhHHHHHHHHHhchhhhccCCCcEEEEEEecCCCc---ccCceechhhhhhhHHHhcccccCCcCCCEEEEECCHH
Confidence 99999888876 43210000 0 147888888888742 34566665543322 1111 12334445555556
Q ss_pred HHHHHH
Q 011270 313 WMAALV 318 (489)
Q Consensus 313 ~~aav~ 318 (489)
|+.++.
T Consensus 223 m~~~v~ 228 (257)
T 2qdx_A 223 MLEETS 228 (257)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 17
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=99.93 E-value=2.5e-25 Score=221.82 Aligned_cols=215 Identities=18% Similarity=0.254 Sum_probs=154.0
Q ss_pred ceeEEEEEEeCC-----CeEEEEeecCC-CCcccCCeEEEEecCCCC----CcceeeeEEeecCCC---CCCeEEEEEEe
Q 011270 87 ETCILSARVFPS-----KAIELILPKHA-GLKFTPTSVIFMKIPSIS----KFQWHSFSITSSSSV---DDQTMSLIVKC 153 (489)
Q Consensus 87 ~~~vv~~~~~~~-----~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~s----~~~~hPFSIas~p~~---~~~~l~l~Ik~ 153 (489)
..+|++++.+++ ++.++++..+. .+.|+||||+.|.+|..+ ++++|||||+|+|.. +++.++|+||.
T Consensus 23 ~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~~l~l~Vk~ 102 (304)
T 2bmw_A 23 IGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQ 102 (304)
T ss_dssp EEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEEEC
T ss_pred EEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCCEEEEEEEE
Confidence 367888898988 89999997653 578999999999998642 357899999998742 36789999997
Q ss_pred ------------CCCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCC-CCCCCCeEEEEEeCCChhhHHHHHHHHH
Q 011270 154 ------------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATM-DFLRYDSLLLVAGGIGITPFLSILQEIA 220 (489)
Q Consensus 154 ------------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~-~~~~~~~vvlIAGGiGITP~lsil~~l~ 220 (489)
.|.+|++|.+ ++ +|+.+.|+||+|.+.. +....+++||||||+||||+++++++++
T Consensus 103 ~~y~~~~~~~~~~G~~S~~L~~-l~----------~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~ 171 (304)
T 2bmw_A 103 LEYKHPESGETVYGVCSTYLTH-IE----------PGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMF 171 (304)
T ss_dssp CEECSSSSSSCEECHHHHHHHT-CC----------TTCEEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHH
T ss_pred EEeeccccCcCCCcchhhHHhc-CC----------CCCEEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHH
Confidence 4678998876 33 5899999999998643 3335789999999999999999999988
Q ss_pred Hhhcc---cCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhH--hh
Q 011270 221 SAQSN---RKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVR--AV 295 (489)
Q Consensus 221 ~~~~~---~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~--~~ 295 (489)
..... .......+++|+|++|+.+++.+.+++.+...+ ...++++++++|+++..+.+.++++++..... .+
T Consensus 172 ~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l 248 (304)
T 2bmw_A 172 KDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK---YPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQL 248 (304)
T ss_dssp CHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHH---CTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHH
T ss_pred HhhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHh---CCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHH
Confidence 64311 011123679999999999999998888765432 11478899999998765544444444332211 11
Q ss_pred -h-c-CCCCceEEecCCcHHHHHHH
Q 011270 296 -R-F-GTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 296 -~-~-~~~~~~~v~g~g~~~~~aav 317 (489)
. . .....+|+|||.+ |+.++
T Consensus 249 ~~~~~~~~~~vyvCGp~~--m~~~v 271 (304)
T 2bmw_A 249 WQLIKNQKTHTYICGPPP--MEEGI 271 (304)
T ss_dssp HHHHTSTTEEEEEEECTT--HHHHH
T ss_pred HHHhhcCCcEEEEECCHH--HHHHH
Confidence 1 1 2234567777654 55544
No 18
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=99.93 E-value=1.2e-25 Score=220.08 Aligned_cols=210 Identities=17% Similarity=0.188 Sum_probs=155.9
Q ss_pred ceeEEEEEEeCCCeEEEEeecCC---CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC---------
Q 011270 87 ETCILSARVFPSKAIELILPKHA---GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--------- 154 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--------- 154 (489)
..++++++.+++++.++++..+. .+.|+||||++|.++..+..++|||||+|.|. +++.++|+||..
T Consensus 14 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~-~~~~~~l~vk~~~~~~~~~~~ 92 (270)
T 2cnd_A 14 HCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVD-EIGHFDLLVKVYFKNEHPKFP 92 (270)
T ss_dssp EEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTT-CCSEEEEEEECCCSSCBTTBT
T ss_pred EEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEeeeCCcEEEEeeccCCCcc-CCCEEEEEEEEeccCcccccC
Confidence 46788999999999999887654 46899999999998866667899999999875 468999999973
Q ss_pred --CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCC--------CCCC--CCCCeEEEEEeCCChhhHHHHHHHHHHh
Q 011270 155 --GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPA--------TMDF--LRYDSLLLVAGGIGITPFLSILQEIASA 222 (489)
Q Consensus 155 --G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~--------~~~~--~~~~~vvlIAGGiGITP~lsil~~l~~~ 222 (489)
|.+|++|.+ ++ +|+.+.|+||||.+ ..+. ...++++|||||+||||++++++++..+
T Consensus 93 ~~G~~s~~l~~-l~----------~Gd~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~ 161 (270)
T 2cnd_A 93 NGGLMTQYLDS-LP----------VGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRD 161 (270)
T ss_dssp TCCHHHHHHHH-CC----------TTCEEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHT
T ss_pred CCCchhhHHhc-CC----------CCCEEEEECCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhc
Confidence 778998853 33 58999999999973 2221 2478999999999999999999999864
Q ss_pred hcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCC---CCCCcchhhhcchhhhhHhhhcCC
Q 011270 223 QSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQE---EQSSVTVREVLNDLSLVRAVRFGT 299 (489)
Q Consensus 223 ~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~---~~~~~~~~g~v~~~~~~~~~~~~~ 299 (489)
. .....+++|+|++|+.+++.+.+++.++..+. ..++++++.++++ ++.|.+.+|++++..+.+.+...
T Consensus 162 ~----~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~---~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~l~~~- 233 (270)
T 2cnd_A 162 Q----PEDHTEMHLVYANRTEDDILLRDELDRWAAEY---PDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEG- 233 (270)
T ss_dssp T----TTCCCEEEEEEEESCGGGCTTHHHHHHHHHHC---TTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCC-
T ss_pred C----CCCCcEEEEEEEcCCHHHcchHHHHHHHHHHC---cCcEEEEEEECCCCCCCCCcccccccCCHHHHHHhcCCC-
Confidence 2 01247899999999999999988887654321 2367888878773 34455678888876555443322
Q ss_pred CCceEEecCCcHHHHHH
Q 011270 300 QSNYAVNGLESLIWMAA 316 (489)
Q Consensus 300 ~~~~~v~g~g~~~~~aa 316 (489)
.....++.||++.||.+
T Consensus 234 ~~~~~vyvCGp~~m~~~ 250 (270)
T 2cnd_A 234 GDDTLALACGPPPMIQF 250 (270)
T ss_dssp SSSEEEEEECCHHHHHT
T ss_pred cCCEEEEEECCHHHHHH
Confidence 12334444555556654
No 19
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=99.93 E-value=2.1e-25 Score=218.96 Aligned_cols=210 Identities=18% Similarity=0.209 Sum_probs=155.7
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCC-CCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSI-SKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQ 163 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~-s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~ 163 (489)
..++++++.+++++.++++..+..+.|+||||+.|.+|.. +..++|||||+|.|. ++.++|+||.. |.+|++|.+
T Consensus 18 ~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~--~~~~~l~v~~~~~G~~s~~l~~ 95 (272)
T 2bgi_A 18 AQTVTSVRHWTDTLFSFRVTRPQTLRFRSGEFVMIGLLDDNGKPIMRAYSIASPAW--DEELEFYSIKVPDGPLTSRLQH 95 (272)
T ss_dssp EEEEEEEEEEETTEEEEEEECCTTCCCCTTCEEEEEEECTTSCEEEEEEECCSCTT--CSEEEEEEECCTTCTTHHHHTT
T ss_pred EEEEEEEEEcCCCEEEEEEeCCCCCccCCCCEEEEEeccCCCCeeeeeeeeccCCC--CCeEEEEEEEccCCCchhHHHh
Confidence 4678899999999999999887778899999999999853 556899999999874 47899999986 899999863
Q ss_pred HHHhcccCCcCcCcceeEEEe-CCCCCCCCCCC-CCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeC
Q 011270 164 MIHAELDSDADQMRCIPVAIE-GPYGPATMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 241 (489)
Q Consensus 164 ~~~~~~~~~~~~~~g~~v~v~-GPyG~~~~~~~-~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r 241 (489)
++ +|+.+.|. ||+|.+..+.. .+++++|||||+||||++++++++.... ...+++|+|++|
T Consensus 96 -l~----------~Gd~v~v~~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~------~~~~v~l~~~~r 158 (272)
T 2bgi_A 96 -IK----------VGEQIILRPKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE------KFDEVIMMHACR 158 (272)
T ss_dssp -CC----------TTCEEEEEEEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT------SCSEEEEEEEES
T ss_pred -CC----------CCCEEEEeeCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC------CCCcEEEEEEeC
Confidence 22 58999999 99999865433 3789999999999999999999887542 247899999999
Q ss_pred CcchhhhHHhHh-HHhhhccC-C--CcceEEEEEEeCCCCCCcchhhhcchhhhhHh----hhcC--CCCceEEecCCcH
Q 011270 242 SSQEICLLNSIS-PLLSNQQS-K--KWHLTLKVFVTQEEQSSVTVREVLNDLSLVRA----VRFG--TQSNYAVNGLESL 311 (489)
Q Consensus 242 ~~~~l~~~~~l~-~~l~~~~~-~--~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~----~~~~--~~~~~~v~g~g~~ 311 (489)
+.+++.+.+++. ++..+... + ..+++++..+|+++ .+.+|++++...... .... +.....++.||++
T Consensus 159 ~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~---~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~ 235 (272)
T 2bgi_A 159 TVAELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREE---FHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGSL 235 (272)
T ss_dssp SSGGGHHHHHHHHHHHHCTTTTTTSTTTEEEEEEESSSC---CSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEECH
T ss_pred CHHHhhHHHHHHHHHHhcchhhcccCCcEEEEEEecCCc---cccCceechHHHhhhHhhhcccccCCCCCcEEEEECCH
Confidence 999999888887 44320000 1 25788888888873 234667766543221 1111 1133445555555
Q ss_pred HHHHHHH
Q 011270 312 IWMAALV 318 (489)
Q Consensus 312 ~~~aav~ 318 (489)
.|+.++.
T Consensus 236 ~m~~~v~ 242 (272)
T 2bgi_A 236 AFNVDVM 242 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 20
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=99.93 E-value=2.2e-25 Score=230.46 Aligned_cols=207 Identities=14% Similarity=0.174 Sum_probs=157.8
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCC---CcccCCeEEEEecCCCC--CcceeeeEEeecCCCCCCeEEEEEEeC--CCccH
Q 011270 87 ETCILSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPSIS--KFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTS 159 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~~s--~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~ 159 (489)
..++++.+.+++++.++++..+.+ ..|+||||+.|.+|..+ ..++|||||+|.|. ++.++|+||.. |.+|+
T Consensus 154 ~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~~~G~~S~ 231 (396)
T 1gvh_A 154 DFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKREEGGQVSN 231 (396)
T ss_dssp EEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEECCTTCHHHH
T ss_pred EEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCeEEEEecCCCCccceeecceeccCCC--CCeEEEEEEEcCCCcchH
Confidence 577889999999999999976532 58999999999998433 35799999999874 57899999996 88999
Q ss_pred HHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEE
Q 011270 160 SLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYV 239 (489)
Q Consensus 160 ~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~ 239 (489)
+|++.++ +|+.+.+.||+|.+..+....++++|||||+||||+++|++++..++ ..++++|+|+
T Consensus 232 ~L~~~l~----------~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~------~~~~v~l~~~ 295 (396)
T 1gvh_A 232 WLHNHAN----------VGDVVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAG------HTAQVNWFHA 295 (396)
T ss_dssp HHHHTCC----------TTCEEEEEEEECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHT------CCSCEEEEEE
T ss_pred HHHhcCC----------CCCEEEEEcCCcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcC------CCCcEEEEEE
Confidence 9988544 58999999999988665456789999999999999999999998752 3478999999
Q ss_pred eCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCC-----cchhhhcchhhhhHhhhcCCCCceEEecCCcHHHH
Q 011270 240 IKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS-----VTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWM 314 (489)
Q Consensus 240 ~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~-----~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~ 314 (489)
+|+.+++.+.+++.+... +..+++++++++++++.+ .+..|++++..+.+... .+ ...++.|||+.||
T Consensus 296 ~r~~~~~~~~~el~~l~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~~~~-~~--~~~vyvCGp~~m~ 368 (396)
T 1gvh_A 296 AENGDVHAFADEVKELGQ----SLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFS-DP--TMQFYLCGPVGFM 368 (396)
T ss_dssp ESCTTTCCSHHHHHHHHH----TSSSEEEEEEESSCCHHHHHHTCCSEESSCCGGGSSSCCC-CT--TCEEEEESCHHHH
T ss_pred eCCHHHhhhHHHHHHHHH----HCCCeEEEEEECCCCccccccCccCccCcCCHHHHhhccC-CC--CCEEEEeCCHHHH
Confidence 999999998888866543 235788998998875432 23456776543322111 12 3344455555666
Q ss_pred HHHH
Q 011270 315 AALV 318 (489)
Q Consensus 315 aav~ 318 (489)
.++.
T Consensus 369 ~~v~ 372 (396)
T 1gvh_A 369 QFTA 372 (396)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 21
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=99.93 E-value=3.9e-25 Score=228.84 Aligned_cols=214 Identities=17% Similarity=0.228 Sum_probs=157.5
Q ss_pred ceeEEEEEEeCC-----CeEEEEeecCC-CCcccCCeEEEEecCCC----CCcceeeeEEeecCCC---CCCeEEEEEEe
Q 011270 87 ETCILSARVFPS-----KAIELILPKHA-GLKFTPTSVIFMKIPSI----SKFQWHSFSITSSSSV---DDQTMSLIVKC 153 (489)
Q Consensus 87 ~~~vv~~~~~~~-----~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~----s~~~~hPFSIas~p~~---~~~~l~l~Ik~ 153 (489)
..+|++++.+++ ++.+|++..+. .+.|+||||+.|.+|.. .++++|||||+|+|.. +++.++|+||.
T Consensus 124 ~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~ 203 (402)
T 2b5o_A 124 LGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQ 203 (402)
T ss_dssp EEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSSCEEEEEEEC
T ss_pred EEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCCCEEEEEEEE
Confidence 357888888988 99999998765 48999999999999864 2358999999999853 25789999997
Q ss_pred ------------CCCccHHHHHHHHhcccCCcCcCcc-eeEEEeCCCCCCCC-CCCCCCeEEEEEeCCChhhHHHHHHHH
Q 011270 154 ------------DGEWTSSLYQMIHAELDSDADQMRC-IPVAIEGPYGPATM-DFLRYDSLLLVAGGIGITPFLSILQEI 219 (489)
Q Consensus 154 ------------~G~~T~~L~~~~~~~~~~~~~~~~g-~~v~v~GPyG~~~~-~~~~~~~vvlIAGGiGITP~lsil~~l 219 (489)
.|.+|++|++ ++ +| +.+.|+||+|.+.. +....+++||||||+||||++++++++
T Consensus 204 ~~y~~~~~~~~~~G~~S~~L~~-l~----------~G~d~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l 272 (402)
T 2b5o_A 204 LEYQDPESGETVYGVCSTYLCN-LP----------VGTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRM 272 (402)
T ss_dssp CEEECTTTCCEEECHHHHHHHT-CC----------TTCCCEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHH
T ss_pred eeecccccCcCCCCchhHHHhh-CC----------CCCceEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHH
Confidence 5778888876 33 58 99999999998743 333578999999999999999999999
Q ss_pred HHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhH--hh-h
Q 011270 220 ASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVR--AV-R 296 (489)
Q Consensus 220 ~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~--~~-~ 296 (489)
+.... .......+++|+|++|+.+++.+.+++.++..+ ...+++++++++++++.+.+.++++++..... .+ .
T Consensus 273 ~~~~~-~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~---~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~ 348 (402)
T 2b5o_A 273 FKEQH-EDYKFKGKAWLIFGVPYTANILYKDDFEKMAAE---NPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFE 348 (402)
T ss_dssp HTCCC-SSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHH---CTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHH
T ss_pred HHhcc-ccccccCCEEEEEecCCHHHhHHHHHHHHHHHh---CCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHHH
Confidence 86421 111124789999999999999999988765432 12378999999998766655566655443321 11 1
Q ss_pred -c-CCCCceEEecCCcHHHHHHH
Q 011270 297 -F-GTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 297 -~-~~~~~~~v~g~g~~~~~aav 317 (489)
. .+...+|+|||. .|+.++
T Consensus 349 ~l~~~~~~vyvCGP~--~M~~~v 369 (402)
T 2b5o_A 349 MIQKPNTHVYMCGLK--GMQPPI 369 (402)
T ss_dssp HHTSTTEEEEEEECG--GGHHHH
T ss_pred HhccCCcEEEEECCH--HHHHHH
Confidence 1 124456677664 455554
No 22
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=99.93 E-value=6.6e-25 Score=227.34 Aligned_cols=206 Identities=19% Similarity=0.287 Sum_probs=156.7
Q ss_pred ceeEEEEEEeCCCeEEEEeecCCC---CcccCCeEEEEecCC-C-CCcceeeeEEeecCCCCCCeEEEEEEeC-------
Q 011270 87 ETCILSARVFPSKAIELILPKHAG---LKFTPTSVIFMKIPS-I-SKFQWHSFSITSSSSVDDQTMSLIVKCD------- 154 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~~---~~~~pGQ~v~l~~p~-~-s~~~~hPFSIas~p~~~~~~l~l~Ik~~------- 154 (489)
..++++.+.+++++.++++..+.+ ..|+||||+.|.+|. . ...++|||||+|.|. ++.++|+||..
T Consensus 156 ~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~~~~~~~~ 233 (403)
T 1cqx_A 156 TFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKREGGGPQPP 233 (403)
T ss_dssp EEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECCCBTTBCC
T ss_pred eEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCcceeecceecCCCC--CCeEEEEEEECCCCCCCC
Confidence 467889999999999999976532 589999999999973 2 235799999999874 57899999986
Q ss_pred CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceE
Q 011270 155 GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKV 234 (489)
Q Consensus 155 G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i 234 (489)
|.+|++|++.++ +|+.+.|.||+|.+..+....++++|||||+||||+++|++++.. + ..+++
T Consensus 234 G~~S~~L~~~l~----------~Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~------~~~~v 296 (403)
T 1cqx_A 234 GYVSNLLHDHVN----------VGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-A------PPRQV 296 (403)
T ss_dssp CHHHHHHHHHCC----------TTCEEEECCCBCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-S------SCCCE
T ss_pred CeehHHHhhCCC----------CCCEEEEecCccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-C------CCCcE
Confidence 678999987655 589999999999887654567899999999999999999999975 1 23789
Q ss_pred EEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCC-----cchhhhcchhhhhHhhhcCCCCceEEecCC
Q 011270 235 QLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS-----VTVREVLNDLSLVRAVRFGTQSNYAVNGLE 309 (489)
Q Consensus 235 ~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~-----~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g 309 (489)
+|+|++|+.+++.+.+++.+...+ ..+++++++++++++.+ .+..|++++..+.+.... +...+|+||
T Consensus 297 ~l~~~~r~~~~~~~~~el~~l~~~----~~~~~~~~~~s~~~~~~~~~~~~~~~G~i~~~~l~~~~~~-~~~~vyvCG-- 369 (403)
T 1cqx_A 297 VFVHGARNSAVHAMRDRLREAAKT----YENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILL-PDADYYICG-- 369 (403)
T ss_dssp EEEEEESCSSSCHHHHHHHHHHHH----CTTEEEEEEESSCCTTCCBTTTBSEESSCCGGGSHHHHCC-TTCEEEEES--
T ss_pred EEEEEeCChhhCcHHHHHHHHHHh----CCCcEEEEEECCCCcccccccccCcCCCcCHHHHhhccCC-CCCEEEEeC--
Confidence 999999999999888887665432 24688998998876543 234577776544432221 234455555
Q ss_pred cHHHHHHHH
Q 011270 310 SLIWMAALV 318 (489)
Q Consensus 310 ~~~~~aav~ 318 (489)
|+.||.++.
T Consensus 370 p~~m~~~v~ 378 (403)
T 1cqx_A 370 PIPFMRMQH 378 (403)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 555666654
No 23
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.92 E-value=8e-25 Score=213.64 Aligned_cols=195 Identities=18% Similarity=0.267 Sum_probs=146.3
Q ss_pred ceeEEEEEEeCCCeEEEEeecCC-CCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEe--CCCccHHHHH
Q 011270 87 ETCILSARVFPSKAIELILPKHA-GLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--DGEWTSSLYQ 163 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~--~G~~T~~L~~ 163 (489)
..++++++.+++++.++++..+. ...|+||||+.|.+|..+..++|||||+|.|. +++.++|+||. .|.+|++|.+
T Consensus 7 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-~~~~l~~~vk~~~~G~~S~~l~~ 85 (262)
T 1ep3_B 7 MMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDK-RAKTCTILYRIGDETTGTYKLSK 85 (262)
T ss_dssp EEEEEEEEEEETTEEEEEEESGGGGGCCSTTCEEEECCSCTTCCSCEEEECCEEET-TTTEEEEEEECCCTTSHHHHHHT
T ss_pred ceEEEEEEEecCCEEEEEEEcCcccccCCCCceEEEEcCCCCceeeEEEEeeeecC-CCCEEEEEEEEecCCchHHHHhc
Confidence 46788999999999999998765 35799999999999976567899999999875 56799999999 8999998863
Q ss_pred HHHhcccCCcCcCcceeEEEeCCCCC-CCCCCC-CCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeC
Q 011270 164 MIHAELDSDADQMRCIPVAIEGPYGP-ATMDFL-RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIK 241 (489)
Q Consensus 164 ~~~~~~~~~~~~~~g~~v~v~GPyG~-~~~~~~-~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r 241 (489)
++ +|+.+.|.||+|. +..+.. ..++++|||||+||||++++++++..++ .+++|+|++|
T Consensus 86 -l~----------~Gd~v~v~gP~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~--------~~v~l~~~~r 146 (262)
T 1ep3_B 86 -LE----------SGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG--------CQMTILLGFA 146 (262)
T ss_dssp -CC----------TTCEEEEEEEESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT--------CEEEEEEEES
T ss_pred -CC----------CCCEEEEEcccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC--------CeEEEEEEcC
Confidence 32 5899999999998 654432 3789999999999999999999998752 6899999999
Q ss_pred CcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHH
Q 011270 242 SSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 242 ~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav 317 (489)
+.+++.+.+++..+. . . ++++ .+++ .+.+.+|++++. +.+. ..+...+|+|| ++.|+.++
T Consensus 147 ~~~~~~~~~el~~l~-----~-~--~~~~-~~~~--~~~~~~g~v~~~-l~~~--~~~~~~vyvCG--p~~m~~~v 206 (262)
T 1ep3_B 147 SENVKILENEFSNLK-----N-V--TLKI-ATDD--GSYGTKGHVGML-MNEI--DFEVDALYTCG--APAMLKAV 206 (262)
T ss_dssp SGGGCCCHHHHHTST-----T-E--EEEE-EETT--CSSSEESCHHHH-HHHC--CSCCSEEEEES--CHHHHHHH
T ss_pred CHHHhhhHHHHhhhc-----c-C--cEEE-EECC--CCCcceeehHHH-HHhh--ccCCCEEEEEC--CHHHHHHH
Confidence 999998888875421 1 1 3332 2332 244556777762 2222 12234455555 55566655
No 24
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=99.92 E-value=2.6e-24 Score=215.47 Aligned_cols=185 Identities=18% Similarity=0.302 Sum_probs=142.6
Q ss_pred ceeEEEEEEeCCC--------------eEEEEeecCCC-CcccCCeEEEEecCCCC----C-------cceeeeEEeecC
Q 011270 87 ETCILSARVFPSK--------------AIELILPKHAG-LKFTPTSVIFMKIPSIS----K-------FQWHSFSITSSS 140 (489)
Q Consensus 87 ~~~vv~~~~~~~~--------------~~~l~~~~~~~-~~~~pGQ~v~l~~p~~s----~-------~~~hPFSIas~p 140 (489)
..+|++++.++++ +.++++..+.. +.|+||||+.|.+|... + +++|||||+|+|
T Consensus 23 ~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R~ySi~s~p 102 (314)
T 2rc5_A 23 KAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGVIPPGEDPEKKAKGLADVGYTVRLYSIASPS 102 (314)
T ss_dssp EEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTTCEEEEECSSBCHHHHHTTCSCCBCCCEEEECCSCT
T ss_pred EEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCCCEEEEECCCCccccCccchhhcCCCceeeeccCCc
Confidence 3678899999887 88999987653 78999999999998752 2 478999999987
Q ss_pred CC---CCCeEEEEEEeC------------CCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCC--CCCCeEEEE
Q 011270 141 SV---DDQTMSLIVKCD------------GEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDF--LRYDSLLLV 203 (489)
Q Consensus 141 ~~---~~~~l~l~Ik~~------------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~--~~~~~vvlI 203 (489)
.. +++.++|+||.. |.+|++|.+ ++ +|+.+.|+||+|.+.... ...+++|||
T Consensus 103 ~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~-l~----------~Gd~v~v~gP~G~~~~~~~~~~~~~~vlI 171 (314)
T 2rc5_A 103 YSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCD-LK----------PGDEVTMTGPSGKKFLLPNTDFSGDIMFL 171 (314)
T ss_dssp TCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHT-CC----------TTCEEEEEEEECSSSCCCSSCBCSCEEEE
T ss_pred cccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhc-CC----------CcCEEEEEeccCCceeCCCCCCCCCEEEE
Confidence 42 367899999973 458888886 43 589999999999875322 347899999
Q ss_pred EeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCC-cch
Q 011270 204 AGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS-VTV 282 (489)
Q Consensus 204 AGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~-~~~ 282 (489)
|||+||||++++++++.... ......+++|+|++|+.+++.+.+++.+...+ ..+++++.++|+++..+ .+.
T Consensus 172 agGtGIaP~~s~l~~l~~~~---~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~----~~~~~~~~~~s~~~~~~~~g~ 244 (314)
T 2rc5_A 172 ATGTGIAPFIGMSEELLEHK---LIKFTGNITLVYGAPYSDELVMMDYLKGLESK----HKNFKLITAISREEKNSFDGG 244 (314)
T ss_dssp EEGGGGHHHHHHHHHHHTTC---SSCBCSCEEEEEEESSGGGSCSHHHHHHHHHH----HSSEEEEEEETTTCBCTTTSS
T ss_pred ECCccHHHHHHHHHHHHHhc---ccCCCCcEEEEEEeCCHHHHhHHHHHHHHHHh----CCcEEEEEEECCCCCcccCCC
Confidence 99999999999999998642 11123679999999999999888888665332 13788999999886443 444
Q ss_pred hhhcchh
Q 011270 283 REVLNDL 289 (489)
Q Consensus 283 ~g~v~~~ 289 (489)
++++++.
T Consensus 245 ~~~v~~~ 251 (314)
T 2rc5_A 245 RMYISHR 251 (314)
T ss_dssp BCCHHHH
T ss_pred ceehhHH
Confidence 5555543
No 25
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.91 E-value=3.7e-24 Score=197.22 Aligned_cols=182 Identities=26% Similarity=0.506 Sum_probs=121.0
Q ss_pred EEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhccc-CCCCCceEEEEEEeCCcchhhh-HHhHhHHhhh
Q 011270 181 VAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNR-KYRFPSKVQLIYVIKSSQEICL-LNSISPLLSN 258 (489)
Q Consensus 181 v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~-~~~~~~~i~lvw~~r~~~~l~~-~~~l~~~l~~ 258 (489)
|.|+||||.+..+...++++||||||+||||++|++++++.+..+. .....++++|+|++|+.+++.| .+++.++...
T Consensus 1 v~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~~ 80 (186)
T 3a1f_A 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQ 80 (186)
T ss_dssp CCTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHHH
T ss_pred CeEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHHH
Confidence 3578999988655567899999999999999999999998753111 1123578999999999999994 4555443221
Q ss_pred cc--CCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHHHHHHHHHHHHHhhhceEE
Q 011270 259 QQ--SKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFVIFLISLNHIF 336 (489)
Q Consensus 259 ~~--~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~~~s~~~f~~~~~~~~~~~ 336 (489)
.. ....++++++++|+++.+... . .+
T Consensus 81 ~~~~~~~~~~~~~~~~t~~~~~~~~--~--------------------------------------------------~~ 108 (186)
T 3a1f_A 81 MQERNNAGFLSYNIYLTGWDESQAN--H--------------------------------------------------FA 108 (186)
T ss_dssp HHHTTCTTSEEEEEEETTC-------------------------------------------------------------
T ss_pred HhhccCCCeEEEEEEEcCCCCCccc--c--------------------------------------------------ee
Confidence 10 012478999999986432100 0 00
Q ss_pred ecCCCCCccccccCCccccccCCCCchhHHHHHHHHHHHHhhhhhhHHHHHHHHhhhccCCCCCCccCCccccccCCccc
Q 011270 337 VPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQGKAVQVLGPIEE 416 (489)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (489)
+..+ + . .+. ..+.
T Consensus 109 ~~~~--~----------------~------------------------------------~~~----------~~g~--- 121 (186)
T 3a1f_A 109 VHHD--E----------------E------------------------------------KDV----------ITGL--- 121 (186)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eccc--c----------------c------------------------------------ccc----------CCCC---
Confidence 0000 0 0 000 0010
Q ss_pred eeeeeeCCCCChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhhchhhhcccCCCCCceeeecccc
Q 011270 417 EHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNF 487 (489)
Q Consensus 417 ~~~~~~g~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~~~~~~~~~~~~~~~~~fhs~~F 487 (489)
...+|+ +|||++++++++...+++.++.||+|||+.|.++|++.+.+.... .+...+++||.|+|
T Consensus 122 ~~~~~~-gR~~~~~~~~~~~~~~~~~~~~v~~CGP~~m~~~v~~~l~~~g~~-----~~~~~~~~~~~E~F 186 (186)
T 3a1f_A 122 KQKTLY-GRPNWDNEFKTIASQHPNTRIGVFLCGPEALAETLSKQSISNSES-----GPRGVHFIFNKENF 186 (186)
T ss_dssp -CCEEE-SCCCHHHHHHHHHHHSTTCEEEEEEESCHHHHHHHHHHHHHTCCC-----STTCCEEEEECCCC
T ss_pred cccccc-CCCCHHHHHHHHHHhCCCCcEEEEEeCCHHHHHHHHHHHHHhhcc-----CCCCCEEEEEeccC
Confidence 013677 799999999988777665689999999999999999999985420 02356799999998
No 26
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=99.84 E-value=7.8e-21 Score=194.43 Aligned_cols=172 Identities=15% Similarity=0.156 Sum_probs=129.7
Q ss_pred cccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC----------CCccHHHHHHHHhcccCCcCcCcceeE
Q 011270 112 KFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD----------GEWTSSLYQMIHAELDSDADQMRCIPV 181 (489)
Q Consensus 112 ~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~----------G~~T~~L~~~~~~~~~~~~~~~~g~~v 181 (489)
.+.||||+.+..| .+.|||||+|+|..+++.++|+||.. |..|++|.+.++ +|+.|
T Consensus 145 ~~~~Gq~v~l~~~----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~G~~S~~L~~~l~----------~Gd~v 210 (374)
T 1ddg_A 145 QLDAEALINLLRP----LTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVE----------EEGEV 210 (374)
T ss_dssp CCCHHHHHHHSCB----CCCEEEEBCCCTTTSCSEEEEEEEECEEEETTEEEECHHHHHHHHSCC----------SSCEE
T ss_pred CCCHHHHHhhccC----CCCccceecCCCCCCCCEEEEEEEEEEeecCCCCCCCCchHHHHhcCC----------CCCEE
Confidence 7899999998766 38899999999864478999999975 778999987444 58999
Q ss_pred EEeC-CCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCc-chhhhHHhHhHHhhhc
Q 011270 182 AIEG-PYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLSNQ 259 (489)
Q Consensus 182 ~v~G-PyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~-~~l~~~~~l~~~l~~~ 259 (489)
.|.| |.|.+..+.....++||||||+|||||+++++++...+ ...++.|+|++|+. +|+.+.+++.+...
T Consensus 211 ~v~~~~~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~------~~~~~~L~~G~R~~~~d~ly~~El~~~~~-- 282 (374)
T 1ddg_A 211 RVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADE------APGKNWLFFGNPHFTEDFLYQVEWQRYVK-- 282 (374)
T ss_dssp EEEEECCTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHT------CCSCEEEEEEESCHHHHCTTHHHHHHHHH--
T ss_pred EEEEeeCCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcC------CCCCEEEEEEeCCchhhhhHHHHHHHHHH--
Confidence 9998 55677665456789999999999999999999998753 34689999999998 78889888876543
Q ss_pred cCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEec
Q 011270 260 QSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNG 307 (489)
Q Consensus 260 ~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g 307 (489)
....+++++.+||+++.....++.+.+....-.....+...+|+||
T Consensus 283 --~~~~~~l~~a~Srd~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG 328 (374)
T 1ddg_A 283 --EGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCG 328 (374)
T ss_dssp --TTSCCEEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEE
T ss_pred --hCCCcEEEEEEecCCCCCccHHHHHHHhHHHHHHHHhCCcEEEEEC
Confidence 2245678888999876555666666543211111112345566676
No 27
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.78 E-value=8.4e-19 Score=169.98 Aligned_cols=189 Identities=15% Similarity=0.116 Sum_probs=132.0
Q ss_pred ceeEEEEEEeCCCeEEEEeecCC--CC-cccCCeEEEEecCC-CCCcceeeeEEeecCCCCCCeEEEEEEeC---CCccH
Q 011270 87 ETCILSARVFPSKAIELILPKHA--GL-KFTPTSVIFMKIPS-ISKFQWHSFSITSSSSVDDQTMSLIVKCD---GEWTS 159 (489)
Q Consensus 87 ~~~vv~~~~~~~~~~~l~~~~~~--~~-~~~pGQ~v~l~~p~-~s~~~~hPFSIas~p~~~~~~l~l~Ik~~---G~~T~ 159 (489)
..+|++++.+++++.++++..+. .+ .++|||||.|.+|. .+...+|||||++.+. +.++|.++.. |..|+
T Consensus 10 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~~~~~G~~S~ 86 (252)
T 2gpj_A 10 ELEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVLHDTDGPASS 86 (252)
T ss_dssp EEEEEEEEEEETTEEEEEEESGGGTTCCSCCTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEECCSSCCHHHH
T ss_pred EEEEEEEEEcCCCEEEEEEEcCChhhcCCCCCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEEeCCCCcHHH
Confidence 46788999999999999997654 23 57999999999985 3456889999999763 5777777653 77888
Q ss_pred HHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEE
Q 011270 160 SLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYV 239 (489)
Q Consensus 160 ~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~ 239 (489)
.|. .++ +|+.+.|.||.|.+..+. ..++++||||||||||+++|++++... .++++++.
T Consensus 87 ~l~-~l~----------~Gd~l~v~gP~G~f~l~~-~~~~~lliagGtGitPi~s~l~~l~~~---------~~~~~~~~ 145 (252)
T 2gpj_A 87 WAK-TAQ----------VGELIQIGGPGLKKLINF-EADWFLLAGDMTALPAISVNLAKLPNN---------AVGYAVIE 145 (252)
T ss_dssp HHH-HCC----------TTCEEEEEEEECCCCCCS-SSSEEEEEEEGGGHHHHHHHHHHSCTT---------CEEEEEEE
T ss_pred HHh-hCC----------CCCEEEEecCCCCCcCCC-CCceEEEEcchhhHHHHHHHHHhCCCC---------CcEEEEEE
Confidence 885 343 699999999999886543 357899999999999999999988431 56788888
Q ss_pred eCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhc--CCCCceEEecCCcHHHHHHH
Q 011270 240 IKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRF--GTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 240 ~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~--~~~~~~~v~g~g~~~~~aav 317 (489)
+++.+++..++ ...+++++.+.+.+.. ..+ ..+ .+.+.. .+.....++.||+..||.++
T Consensus 146 ~~~~~d~~~l~-----------~~~~~~v~~~~~~~~~-~~g--~~~-----~~~l~~~~~~~~~~~vy~CGP~~m~~av 206 (252)
T 2gpj_A 146 VLSEADIQPLV-----------HPEHVELHWVINPEAD-PEG--RPL-----VERIAQLPWLAGEPAVWIACEFNSMRAL 206 (252)
T ss_dssp ESSGGGCCCCC-----------CCTEEEEEEEECSSCC-TTC--HHH-----HHHHTTSCCCSSCEEEEEEEEHHHHHHH
T ss_pred ECCHHHhhccc-----------CCCCcEEEEEeCCCCC-ccc--HHH-----HHHHHhccCCCCCcEEEEEcCHHHHHHH
Confidence 99987764221 1235666655443322 101 111 122211 11234556677777777776
Q ss_pred H
Q 011270 318 V 318 (489)
Q Consensus 318 ~ 318 (489)
.
T Consensus 207 ~ 207 (252)
T 2gpj_A 207 R 207 (252)
T ss_dssp H
T ss_pred H
Confidence 4
No 28
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=99.77 E-value=3.2e-18 Score=175.98 Aligned_cols=178 Identities=18% Similarity=0.231 Sum_probs=122.5
Q ss_pred CcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC------------CCccHHHHHHHHhcccCCcCcCcc
Q 011270 111 LKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD------------GEWTSSLYQMIHAELDSDADQMRC 178 (489)
Q Consensus 111 ~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~------------G~~T~~L~~~~~~~~~~~~~~~~g 178 (489)
.+..++|++.+ +|. ++.|||||+|+|..+++.++++|+.. |..|++|.++ + +|
T Consensus 155 ~~~p~~~~l~~-lp~---l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l-~----------~G 219 (393)
T 4dql_A 155 CEMKFSEFIAL-LPS---IRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAEL-Q----------EG 219 (393)
T ss_dssp CCCCHHHHHHT-SCB---CCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHC-C----------TT
T ss_pred CCCCHHHHHHh-CCC---CcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhC-C----------Cc
Confidence 34566777654 344 48899999999875568999999874 6688888763 2 36
Q ss_pred eeEE--EeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCC-cchhhhHHhHhHH
Q 011270 179 IPVA--IEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKS-SQEICLLNSISPL 255 (489)
Q Consensus 179 ~~v~--v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~-~~~l~~~~~l~~~ 255 (489)
+.+. |.||+|.+..+.....++||||||+|||||++++++......++ ....++.|+|++|+ .+|+.|.+++.+.
T Consensus 220 d~v~v~v~~P~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g--~~~~~v~L~~G~R~~~~d~ly~~el~~~ 297 (393)
T 4dql_A 220 DTITCFISTPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQG--QSLGEAHLYFGCRSPHEDYLYQEELENA 297 (393)
T ss_dssp CEEEEEEECCSSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTT--CCCCCEEEEEEESCTTTCCTTHHHHHHH
T ss_pred CEEEEEEEcCCCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcC--CCCCCEEEEEEECCcchhhHHHHHHHHH
Confidence 6655 89999998776556779999999999999999999864321111 12367999999999 5788888888765
Q ss_pred hhhccCCCcceEEEEEEeCCCC-CCcchhhhcchhhhhHhhhcCCCCceEEecCCc
Q 011270 256 LSNQQSKKWHLTLKVFVTQEEQ-SSVTVREVLNDLSLVRAVRFGTQSNYAVNGLES 310 (489)
Q Consensus 256 l~~~~~~~~~l~v~~~vTr~~~-~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~ 310 (489)
.. ..++++++.++|++. ....+++.+.+....-.....+...+|+||+.+
T Consensus 298 ~~-----~~~l~l~~a~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~ 348 (393)
T 4dql_A 298 QS-----EGIITLHTAFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGS 348 (393)
T ss_dssp HH-----TTSCEEEEEESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETT
T ss_pred Hh-----CCCeEEEEEEeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCch
Confidence 42 256788999998543 334444444332211111122345666776654
No 29
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=99.75 E-value=4.6e-18 Score=181.23 Aligned_cols=188 Identities=16% Similarity=0.185 Sum_probs=123.9
Q ss_pred CCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC-------------CCccHHHHHHHHhcccCCcCcCcce--
Q 011270 115 PTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD-------------GEWTSSLYQMIHAELDSDADQMRCI-- 179 (489)
Q Consensus 115 pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~-------------G~~T~~L~~~~~~~~~~~~~~~~g~-- 179 (489)
|+|++...+|.+ +.|+|||+|+|..+++.++|+||.. |..|++|.+.+...........+|+
T Consensus 278 p~~~ll~~lp~l---~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~ 354 (539)
T 2qtl_A 278 PLSLLLEHLPKL---QPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSG 354 (539)
T ss_dssp CHHHHHHHSCBC---CCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC------------
T ss_pred CHHHHHHhCcCC---cceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCCCCcc
Confidence 456665566654 8899999999864578999999975 7789999987521110000112466
Q ss_pred -----eEEEeCCCC-CCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCc-chhhhHHhH
Q 011270 180 -----PVAIEGPYG-PATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSI 252 (489)
Q Consensus 180 -----~v~v~GPyG-~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~-~~l~~~~~l 252 (489)
.|.|.||+| .|..+.....++||||||||||||++++++.......+......++.|+|++|+. +|+.|.+++
T Consensus 355 ~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~dEL 434 (539)
T 2qtl_A 355 KALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKEL 434 (539)
T ss_dssp --CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTHHHH
T ss_pred ccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHHHHH
Confidence 899999997 6665544567999999999999999999997543211111124789999999999 789999998
Q ss_pred hHHhhhccCCCcceEEEEEEeCCCCC--CcchhhhcchhhhhHhhh----c-CCCCceEEecCC
Q 011270 253 SPLLSNQQSKKWHLTLKVFVTQEEQS--SVTVREVLNDLSLVRAVR----F-GTQSNYAVNGLE 309 (489)
Q Consensus 253 ~~~l~~~~~~~~~l~v~~~vTr~~~~--~~~~~g~v~~~~~~~~~~----~-~~~~~~~v~g~g 309 (489)
.+... ....+++++.+||+++. |.+.++++++........ . .....+|+||+.
T Consensus 435 ~~~~~----~g~~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~ 494 (539)
T 2qtl_A 435 RHFLK----HGILTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDA 494 (539)
T ss_dssp HHHHH----TTSSCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESC
T ss_pred HHHHH----hCCCcEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCC
Confidence 76643 23456888999998752 344567776544332211 1 124556666665
No 30
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=99.73 E-value=1.7e-17 Score=173.04 Aligned_cols=172 Identities=20% Similarity=0.132 Sum_probs=117.5
Q ss_pred cceeeeEEeecCCCCCCeEEEEEEeC-------------CCccHHHHHHHHhcccCCcCcCcceeEEEeC-CCCCCCCCC
Q 011270 129 FQWHSFSITSSSSVDDQTMSLIVKCD-------------GEWTSSLYQMIHAELDSDADQMRCIPVAIEG-PYGPATMDF 194 (489)
Q Consensus 129 ~~~hPFSIas~p~~~~~~l~l~Ik~~-------------G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~G-PyG~~~~~~ 194 (489)
.+.|||||+|+|..+++.++++|+.. |..|+.|.+ ++ +|+.|.|.| |.|.|..+.
T Consensus 208 l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~-l~----------~Gd~v~v~~~~~g~F~lp~ 276 (435)
T 1f20_A 208 LQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNR-IQ----------ADDVVPCFVRGAPSFHLPR 276 (435)
T ss_dssp CCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTT-CC----------TTCEEEEEEECCTTSSCCS
T ss_pred CCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhh-CC----------CCCEEEEEEecCCCccCCC
Confidence 48899999999864468899999853 667888754 22 589999999 677887655
Q ss_pred CCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcc-hhhhHHhHhHHhhhccCCCcceEEEEEEe
Q 011270 195 LRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ-EICLLNSISPLLSNQQSKKWHLTLKVFVT 273 (489)
Q Consensus 195 ~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~-~l~~~~~l~~~l~~~~~~~~~l~v~~~vT 273 (489)
....++||||||+|||||+++++++....... .....++.|+|++|+.+ |+.|.+++.+... ....+++++.+|
T Consensus 277 ~~~~piilIagGtGIAP~~s~l~~~~~~~~~~-~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~----~~~~~~l~~a~S 351 (435)
T 1f20_A 277 NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHK-GMNPCPMVLVFGCRQSKIDHIYREETLQAKN----KGVFRELYTAYS 351 (435)
T ss_dssp CTTSCEEEECCGGGGHHHHHHHHHHHHHHHHH-CCCCCCEEEEEEESCTTTSCTTHHHHHHHHH----TTSEEEEEEEES
T ss_pred CCCCCEEEEECCcCcHHHHHHHHHHHHhhhhc-cCCCCCEEEEEeecccccchhHHHHHHHHHH----cCCccEEEEEEC
Confidence 55689999999999999999999987642110 11347899999999997 6788888866543 224567888899
Q ss_pred CCCCC-CcchhhhcchhhhhHhhh-c-CCCCceEEecCCcHHHHHHHH
Q 011270 274 QEEQS-SVTVREVLNDLSLVRAVR-F-GTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 274 r~~~~-~~~~~g~v~~~~~~~~~~-~-~~~~~~~v~g~g~~~~~aav~ 318 (489)
|+++. ....++.+.+....+... . .+...+|+||+. .|+.++.
T Consensus 352 r~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp~--~M~~~V~ 397 (435)
T 1f20_A 352 REPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDV--TMAADVL 397 (435)
T ss_dssp SCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEECH--HHHHHHH
T ss_pred CCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCCh--hHHHHHH
Confidence 98654 233444443221111111 1 234556667665 4665553
No 31
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.70 E-value=1.7e-17 Score=181.98 Aligned_cols=183 Identities=19% Similarity=0.149 Sum_probs=124.6
Q ss_pred CCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC-------------CCccHHHHHHHHhcccCCcCcCcceeE
Q 011270 115 PTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD-------------GEWTSSLYQMIHAELDSDADQMRCIPV 181 (489)
Q Consensus 115 pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~-------------G~~T~~L~~~~~~~~~~~~~~~~g~~v 181 (489)
|+||+...+|. .+.|||||+|+|...++.++++|+.. |..|++|.+ ++ +|+.|
T Consensus 418 p~~~l~~~lp~---l~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~-l~----------~Gd~v 483 (688)
T 1tll_A 418 PATLLLTQLSL---LQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNR-IQ----------ADDVV 483 (688)
T ss_dssp CHHHHHHHSCB---CCCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEECHHHHHHTT-CC----------TTSEE
T ss_pred CHHHHHHhCcc---cceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHh-CC----------CCCEE
Confidence 55665555555 48899999999864467899999853 667888764 22 58999
Q ss_pred EEeC-CCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcc-hhhhHHhHhHHhhhc
Q 011270 182 AIEG-PYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ-EICLLNSISPLLSNQ 259 (489)
Q Consensus 182 ~v~G-PyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~-~l~~~~~l~~~l~~~ 259 (489)
.|.| |.|.|..+.....++||||||||||||+++++++...... ......++.|+|++|+.+ |+.|.+++.+...
T Consensus 484 ~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~-~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~-- 560 (688)
T 1tll_A 484 PCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQH-KGMNPCPMVLVFGCRQSKIDHIYREETLQAKN-- 560 (688)
T ss_dssp EEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHH-SCCCCCCEEEEEEESCTTTTCTTHHHHHHHHH--
T ss_pred EEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhh-ccCCCCCEEEEEEeccchhhhhHHHHHHHHHH--
Confidence 9999 6668766545568999999999999999999998764211 111347899999999997 6788888866543
Q ss_pred cCCCcceEEEEEEeCCCCCC-cchhhhcchhhhhHhh-hc-CCCCceEEecCCcHHHHHHHH
Q 011270 260 QSKKWHLTLKVFVTQEEQSS-VTVREVLNDLSLVRAV-RF-GTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 260 ~~~~~~l~v~~~vTr~~~~~-~~~~g~v~~~~~~~~~-~~-~~~~~~~v~g~g~~~~~aav~ 318 (489)
....+++++.++|++..+ .++++.+.+....+.. .. .+...+|+||+. .|+.++.
T Consensus 561 --~~~~~~l~~a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp~--~M~~~V~ 618 (688)
T 1tll_A 561 --KGVFRELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDV--TMAADVL 618 (688)
T ss_dssp --TTSEEEEEEEESSCTTSCCCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEEH--HHHHHHH
T ss_pred --cCCceEEEEEECCCCCCCccchhhhhHHhHHHHHHHhhccCCcEEEEeCCH--HHHHHHH
Confidence 234568888999987542 3444544432111111 11 234556666654 4666554
No 32
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.70 E-value=2.6e-17 Score=180.58 Aligned_cols=188 Identities=15% Similarity=0.152 Sum_probs=125.4
Q ss_pred ccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEe--------------CCCccHHHHHHHHhccc-CCcCcCc
Q 011270 113 FTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKC--------------DGEWTSSLYQMIHAELD-SDADQMR 177 (489)
Q Consensus 113 ~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~--------------~G~~T~~L~~~~~~~~~-~~~~~~~ 177 (489)
-.|+||+...+|.. +.|||||+|+|..+++.++|+|+. .|..|++|.++...... .......
T Consensus 414 ~~p~~~l~~~lp~l---~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~ 490 (682)
T 2bpo_A 414 TVPMQFLVESVPQM---TPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNL 490 (682)
T ss_dssp TSCHHHHHHHSCBC---CCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCC
T ss_pred CCCHHHHHHhCccc---ccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhccccccccccccccc
Confidence 46888888777764 889999999986556889998753 47788999884331100 0011223
Q ss_pred ceeEEEeCCCCCC--------------CCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcc----cCCCCCceEEEEEE
Q 011270 178 CIPVAIEGPYGPA--------------TMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSN----RKYRFPSKVQLIYV 239 (489)
Q Consensus 178 g~~v~v~GPyG~~--------------~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~----~~~~~~~~i~lvw~ 239 (489)
|+.+.|+||+|.+ .++.....++||||||||||||+++++++...... .......++.|+|+
T Consensus 491 G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG 570 (682)
T 2bpo_A 491 PVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYG 570 (682)
T ss_dssp CCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEE
T ss_pred ccceeeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEe
Confidence 7889999999986 12222357899999999999999999998865320 01112468999999
Q ss_pred eCCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHh--h--hcCCCCceEEecCC
Q 011270 240 IKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRA--V--RFGTQSNYAVNGLE 309 (489)
Q Consensus 240 ~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~--~--~~~~~~~~~v~g~g 309 (489)
+|+.+|+.|.+++.+...+ ...++++.+.+||++.. .++++++...... + ...+...+|+||+.
T Consensus 571 ~R~~~D~ly~dEl~~~~~~---~g~~~~l~~afSr~d~~---~k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa 638 (682)
T 2bpo_A 571 SRNTDDFLYQDEWPEYAKK---LDGSFEMVVAHSRLPNT---KKVYVQDKLKDYEDQVFEMINNGAFIYVCGDA 638 (682)
T ss_dssp ESSSSSCTTTTTHHHHHHH---HGGGEEEEEEESCCTTS---CCCCHHHHHHHTHHHHHHHHTTTCEEEEEECS
T ss_pred cCChhhhhhHHHHHHHHHh---cCCceEEEEEECCCCCC---CCcchHHHHHhhHHHHHHHHhCCcEEEEeCCc
Confidence 9999999998888765322 12467889999995421 2344443332211 1 12234566777763
No 33
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=99.68 E-value=1.7e-16 Score=165.70 Aligned_cols=172 Identities=18% Similarity=0.175 Sum_probs=114.7
Q ss_pred CCcceeeeEEeecCCCCCCeEEEEEEe-----------CCCccHHHHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCC
Q 011270 127 SKFQWHSFSITSSSSVDDQTMSLIVKC-----------DGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFL 195 (489)
Q Consensus 127 s~~~~hPFSIas~p~~~~~~l~l~Ik~-----------~G~~T~~L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~ 195 (489)
.+++.|+|||+|+|..+++.++|+|+. .|..|+.|.+.... .+...+..|.|.||+|.|..+..
T Consensus 230 p~l~pR~YSIsSsp~~~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~g-----g~~~~~~~v~v~~p~g~F~lp~~ 304 (458)
T 3qfs_A 230 PRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPV-----GENGGRALVPMFVRKSQFRLPFK 304 (458)
T ss_dssp CBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCSS-----CSSCCCCEEEEEEECCSCCCCSS
T ss_pred CCCcceeEeeccCcccCCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhccC-----CccCCceEEEEEecCCCcccCCC
Confidence 345889999999986557889998864 37788888765430 00001126999999998876655
Q ss_pred CCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCc-chhhhHHhHhHHhhhccCCCcceEEEEEEeC
Q 011270 196 RYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLSNQQSKKWHLTLKVFVTQ 274 (489)
Q Consensus 196 ~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~-~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr 274 (489)
...++||||||+|||||++++++......++ ....++.|+|++|+. +|+.|.+++.+...+ ....++.+.++|
T Consensus 305 ~~~piImIggGTGIAPfrs~lq~r~~l~~~g--~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~----g~l~~l~~a~SR 378 (458)
T 3qfs_A 305 ATTPVIMVGPGTGVAPFIGFIQERAWLRQQG--KEVGETLLYYGCRRSDEDYLYREELAQFHRD----GALTQLNVAFSR 378 (458)
T ss_dssp TTSCEEEECCGGGGHHHHHHHHHHHHHHHHT--CCCCCEEEEEEESCTTTSCTTHHHHHHHHHH----TSSSEEEEEETT
T ss_pred CCCceEEEcCCcchhhHHHHHHHHHHHHhcC--CCCCCEEEEEEeCCchHhhhHHHHHHHHHHc----CCCCEEEEEEEC
Confidence 5789999999999999999999864321111 123679999999996 789999888765432 123378888899
Q ss_pred CCCCCcchhhhcchhhhhHhhhcCCCCceEEecCC
Q 011270 275 EEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLE 309 (489)
Q Consensus 275 ~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g 309 (489)
+++....+++.+.+....-.....+...+|+||++
T Consensus 379 d~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp~ 413 (458)
T 3qfs_A 379 EQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDA 413 (458)
T ss_dssp SSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECCC
Confidence 87654444444433211111011234566666664
No 34
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.65 E-value=4.1e-16 Score=169.23 Aligned_cols=173 Identities=18% Similarity=0.160 Sum_probs=118.0
Q ss_pred CcceeeeEEeecCCCCCCeEEEEEEe-----------CCCccHHHHHHHHhcccCCcCcCcce-----eEEEeCCCCCCC
Q 011270 128 KFQWHSFSITSSSSVDDQTMSLIVKC-----------DGEWTSSLYQMIHAELDSDADQMRCI-----PVAIEGPYGPAT 191 (489)
Q Consensus 128 ~~~~hPFSIas~p~~~~~~l~l~Ik~-----------~G~~T~~L~~~~~~~~~~~~~~~~g~-----~v~v~GPyG~~~ 191 (489)
+++.|+|||+|+|..+++.++++|+. .|..|++|.+... .|+ .|.|.||+|.|.
T Consensus 391 ~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~----------~Gd~~~~~~v~v~~p~g~F~ 460 (618)
T 3qe2_A 391 RLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEP----------VGENGGRALVPMFVRKSQFR 460 (618)
T ss_dssp BCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCC----------C-----CCEEEEEEECCSCC
T ss_pred ccccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcc----------cCCCCcceEEEEEEecCccc
Confidence 35679999999987556788888753 3778888876532 244 899999999887
Q ss_pred CCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCc-chhhhHHhHhHHhhhccCCCcceEEEE
Q 011270 192 MDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSS-QEICLLNSISPLLSNQQSKKWHLTLKV 270 (489)
Q Consensus 192 ~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~-~~l~~~~~l~~~l~~~~~~~~~l~v~~ 270 (489)
.+.....++||||||||||||+++++++.....++ ....++.|+|++|+. +|+.|.+++.+...+ ....++++
T Consensus 461 lp~~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g--~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~----g~l~~l~~ 534 (618)
T 3qe2_A 461 LPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQG--KEVGETLLYYGCRRSDEDYLYREELAQFHRD----GALTQLNV 534 (618)
T ss_dssp CCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTT--CCCCCEEEEEEESCTTTSCTTHHHHHHHHHH----TSSSEEEE
T ss_pred CCCCCCCCeEEEcCCcchhhHHHHHHHHHHHHhcC--CCCCCEEEEEecCCCccccchHHHHHHHHhc----CCCcEEEE
Confidence 66556678999999999999999999987532111 123679999999999 589999988765432 12337888
Q ss_pred EEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHH
Q 011270 271 FVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAAL 317 (489)
Q Consensus 271 ~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav 317 (489)
..+|+++...++++.+.+....-.....+...+|+||+.. .|+.++
T Consensus 535 a~Srd~~~k~yVqd~l~~~~~~l~~~l~~~a~vYvCGp~~-~M~~~V 580 (618)
T 3qe2_A 535 AFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDAR-NMARDV 580 (618)
T ss_dssp EETTSSSSCCCHHHHHHHTHHHHHHHHHHTCEEEEEEETT-THHHHH
T ss_pred EEcCCCCCCCcHHHHHHHhHHHHHHHHhCCcEEEEECCch-HHHHHH
Confidence 8999876555555555433211111112245666666642 334444
No 35
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.55 E-value=5.1e-15 Score=133.03 Aligned_cols=122 Identities=10% Similarity=0.094 Sum_probs=76.1
Q ss_pred ccee-EEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHH
Q 011270 177 RCIP-VAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPL 255 (489)
Q Consensus 177 ~g~~-v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~ 255 (489)
+|+. +.|.||+|.+.. ....++++||||||||||++||++++..++ .+++|+ ++|+.+++.+.+++.+.
T Consensus 3 ~Gd~vl~v~gP~G~~f~-~~~~~~~llIaGG~GItPl~sm~~~l~~~~--------~~v~l~-g~r~~~d~~~~~el~~l 72 (158)
T 3lrx_A 3 EGDSLLNVAGPLGTPVP-MEKFGKILAIGAYTGIVEVYPIAKAWQEIG--------NDVTTL-HVTFEPMVILKEELEKA 72 (158)
T ss_dssp ---------CCCCCCBC-CCCCSEEEEEEETTHHHHHHHHHHHHHHHT--------CEEEEE-EECBGGGCCSHHHHHHH
T ss_pred CCCEeeEEECCCCCCCc-cCCCCeEEEEEccCcHHHHHHHHHHHHhcC--------CcEEEE-EeCCHHHhhHHHHHHHH
Confidence 5889 599999998753 235789999999999999999999998653 579999 99999999999988653
Q ss_pred hhhccCCCcceEEEEEEeCC----CCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 256 LSNQQSKKWHLTLKVFVTQE----EQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 256 l~~~~~~~~~l~v~~~vTr~----~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
. .++.+...++++ ++.+.+.+|++++. +.+.+...+.. .+|.|||+.||.++.
T Consensus 73 ~-------~~~~~~~v~~~~~~~~~~~~~g~~G~v~~~-l~~~l~~~~~~--~vy~CGP~~mm~~v~ 129 (158)
T 3lrx_A 73 V-------TRHIVEPVPLNPNQDFLANMKNVSQRLKEK-VRELLESEDWD--LVFMVGPVGDQKQVF 129 (158)
T ss_dssp S-------SEEEECCBCCCTTSCHHHHHHHHHHHHHHH-HHHHHHHSCCS--EEEEESCHHHHHHHH
T ss_pred H-------hceEEEEeeccccccCCCCCCCCcccccHH-HHHhhccCCCC--EEEEECCHHHHHHHH
Confidence 1 122222112222 12245567888863 33333322223 455555666777664
No 36
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.53 E-value=1.1e-14 Score=128.49 Aligned_cols=118 Identities=10% Similarity=0.109 Sum_probs=77.4
Q ss_pred EEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhcc
Q 011270 181 VAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQ 260 (489)
Q Consensus 181 v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~ 260 (489)
+.|.||||.+... ...++++|||||+||||++|+++++.+.+ .+++++ ++|+.+++.+.+++.+..
T Consensus 3 ~~v~GP~G~~~~~-~~~~~~llIaGG~GiaPl~sm~~~l~~~~--------~~v~l~-g~R~~~~~~~~~el~~l~---- 68 (142)
T 3lyu_A 3 LNVAGPLGTPVPM-EKFGKILAIGAYTGIVEVYPIAKAWQEIG--------NDVTTL-HVTFEPMVILKEELEKAV---- 68 (142)
T ss_dssp ----CCCSCCBCC-CCCSEEEEEEETTHHHHHHHHHHHHHHTT--------CEEEEE-EEEEGGGCCSHHHHHTTS----
T ss_pred eeeeCCCCCCccC-CCCCeEEEEECcCcHHHHHHHHHHHHhcC--------CcEEEE-EeCCHHHhhHHHHHHHHH----
Confidence 4689999988643 45789999999999999999999998642 579999 999999999999885421
Q ss_pred CCCcceEEEEEEeCCC----CCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270 261 SKKWHLTLKVFVTQEE----QSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV 318 (489)
Q Consensus 261 ~~~~~l~v~~~vTr~~----~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~ 318 (489)
.++.+..+++++. +.|.+.+|++++. +.+.....+.. .+|.|||+.||.++.
T Consensus 69 ---~~~~~~~~~~~~~~~~~d~~~g~~G~v~~~-l~~~~~~~~~~--~vy~CGP~~Mm~av~ 124 (142)
T 3lyu_A 69 ---TRHIVEPVPLNPNQDFLANMKNVSQRLKEK-VRELLESEDWD--LVFMVGPVGDQKQVF 124 (142)
T ss_dssp ---SEEEEEEECCCTTSCHHHHHHHHHHHHHHH-HHHHHHSSCCS--EEEEESCHHHHHHHH
T ss_pred ---hheEEEEeecccccCCCCCCCCCccchhHH-HHHhcccCCCC--EEEEECCHHHHHHHH
Confidence 2333333333321 2245667888864 33333332223 455556666777664
No 37
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=92.87 E-value=0.044 Score=51.27 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=27.9
Q ss_pred CCCChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhhc
Q 011270 424 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 424 ~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+|++...+ . .+..+..||+|||+.|.++|++.+++..
T Consensus 188 g~~~~~~~--~----~~~~~~~vyvCGp~~m~~~v~~~l~~~g 224 (243)
T 4eh1_A 188 GEMQLAEL--I----LPIEDGDFYLCGPIGFMQYVVKQLLALG 224 (243)
T ss_dssp SSCCCTTS--C----CCTTTCEEEEEECHHHHHHHHHHHHHHT
T ss_pred CCccHHHe--e----ccCCCcEEEEECCHHHHHHHHHHHHHcC
Confidence 67776544 2 2235677999999999999999998754
No 38
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=92.38 E-value=0.056 Score=46.58 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.4
Q ss_pred EEEEeCCcchhHHHHHHhhhhc
Q 011270 445 GVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 445 GV~~CGP~~l~~~v~~~c~~~~ 466 (489)
-||+|||+.|.+.|++.+++.+
T Consensus 110 ~vy~CGP~~Mm~av~~~l~~~~ 131 (142)
T 3lyu_A 110 LVFMVGPVGDQKQVFEVVKEYG 131 (142)
T ss_dssp EEEEESCHHHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHHHHcC
Confidence 4999999999999999999965
No 39
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=91.49 E-value=0.086 Score=46.22 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.8
Q ss_pred EEEEeCCcchhHHHHHHhhhhc
Q 011270 445 GVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 445 GV~~CGP~~l~~~v~~~c~~~~ 466 (489)
-||+|||+.|.+++++.+.+..
T Consensus 115 ~vy~CGP~~mm~~v~~~l~~~G 136 (158)
T 3lrx_A 115 LVFMVGPVGDQKQVFEVVKEYG 136 (158)
T ss_dssp EEEEESCHHHHHHHHHHHGGGT
T ss_pred EEEEECCHHHHHHHHHHHHHcC
Confidence 5999999999999999998753
No 40
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=90.73 E-value=0.14 Score=48.80 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=22.7
Q ss_pred CccEEEEEeCCcchhHHHHHHhhhhc
Q 011270 441 GSDIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 441 ~~~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
..+..||+|||+.|.++|++.+.+..
T Consensus 226 ~~~~~v~vCGp~~m~~~v~~~l~~~g 251 (271)
T 4fk8_A 226 PEQDRVMLCGSTAMLKDTTELLKKAG 251 (271)
T ss_dssp TTTEEEEEEECHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcC
Confidence 35778999999999999999998754
No 41
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=90.67 E-value=0.11 Score=48.12 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=20.3
Q ss_pred ccEEEEEeCCcchhHHHHHHh-hhh
Q 011270 442 SDIGVLVCGPESMKESVAKTS-QRK 465 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c-~~~ 465 (489)
.+..||+|||+.|.+++++.+ .+.
T Consensus 193 ~~~~vyvCGp~~m~~~v~~~l~~~~ 217 (232)
T 1qfj_A 193 AEHDIYIAGRFEMAKIARDLFCSER 217 (232)
T ss_dssp TTCEEEEESCHHHHHHHHHHHHHHS
T ss_pred cccEEEEECCHHHHHHHHHHHHHHc
Confidence 456799999999999999987 663
No 42
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=90.48 E-value=0.16 Score=47.78 Aligned_cols=24 Identities=17% Similarity=0.558 Sum_probs=20.8
Q ss_pred cEEEEEeCCcchhHHHHHHhhhhc
Q 011270 443 DIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+..||+|||+.|.++|++.+++..
T Consensus 210 ~~~vyvCGp~~m~~~v~~~l~~~G 233 (250)
T 1tvc_A 210 NPDIYLCGPPGMIDAACELVRSRG 233 (250)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHHC
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcC
Confidence 456999999999999999998743
No 43
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=90.47 E-value=0.17 Score=48.55 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=21.7
Q ss_pred ccEEEEEeCCcchhHHHHHHhhhhc
Q 011270 442 SDIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
.+..||+|||+.|.++|++.+.+..
T Consensus 254 ~~~~vyvCGp~~m~~~v~~~l~~~G 278 (290)
T 2r6h_A 254 EDIEYYMCGPGPMANAVKGMLENLG 278 (290)
T ss_dssp GGEEEEEECCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcC
Confidence 4667999999999999999998743
No 44
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=89.93 E-value=0.14 Score=50.32 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=20.8
Q ss_pred ccEEEEEeCCcchhHHHHHHhhhhc
Q 011270 442 SDIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
.+..||+|||+.|.+++++++.+..
T Consensus 277 ~~~~vyvCGP~~m~~~v~~~l~~~G 301 (316)
T 3jqq_A 277 YKCELYICGKKSIRYKVMDILKSHD 301 (316)
T ss_dssp TCCEEEEEECSTHHHHHHHHHHC--
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 3567999999999999999998843
No 45
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=89.22 E-value=0.19 Score=48.89 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=28.1
Q ss_pred CCCCChHHHHHHHHhhc---CCccEEEEEeCCcchhHHHHHHhhhhc
Q 011270 423 GGRPNFEEIFSELEKET---AGSDIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 423 g~RPn~~~i~~~~~~~~---~~~~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
|+|....+.+.+...+. ...+..||+|||+.|.++|++.+.+..
T Consensus 240 g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp~~m~~~v~~~L~~~~ 286 (311)
T 3lo8_A 240 GGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPGIQDTLKKVA 286 (311)
T ss_dssp ---CCHHHHHHHTHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHH
T ss_pred CCcceehHHHHHHHHHHHHhhcCCcEEEEECCHHHHHHHHHHHHHHH
Confidence 45666666665432211 023567999999999999988888743
No 46
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=89.19 E-value=0.16 Score=48.06 Aligned_cols=22 Identities=5% Similarity=0.045 Sum_probs=19.7
Q ss_pred ccEEEEEeCCcchhHHHHHHhh
Q 011270 442 SDIGVLVCGPESMKESVAKTSQ 463 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c~ 463 (489)
.+.-||+|||+.|.+++++.++
T Consensus 190 ~~~~vy~CGP~~m~~av~~~l~ 211 (252)
T 2gpj_A 190 GEPAVWIACEFNSMRALRRHFK 211 (252)
T ss_dssp SCEEEEEEEEHHHHHHHHHHHH
T ss_pred CCcEEEEEcCHHHHHHHHHHHH
Confidence 4567999999999999999997
No 47
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=88.69 E-value=0.29 Score=47.65 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=22.0
Q ss_pred CccEEEEEeCCcchhHHHHHHhhhhc
Q 011270 441 GSDIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 441 ~~~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
..+..||+|||+.|.++|++++.+..
T Consensus 260 ~~~~~vyvCGp~~M~~~v~~~L~~~~ 285 (310)
T 3vo2_A 260 KDNTYVYMCGLKGMEKGIDDIMLNLA 285 (310)
T ss_dssp STTEEEEEEESTTHHHHHHHHHHHHH
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHHH
Confidence 45788999999999999998888643
No 48
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=88.51 E-value=0.25 Score=49.91 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.9
Q ss_pred cEEEEEeCCcchhHHHHHHhhhhc
Q 011270 443 DIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+..||+|||+.|+++|++.+.+..
T Consensus 356 ~~~vyvCGp~~m~~~v~~~L~~~G 379 (396)
T 1gvh_A 356 TMQFYLCGPVGFMQFTAKQLVDLG 379 (396)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcC
Confidence 456999999999999999998743
No 49
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=87.56 E-value=0.28 Score=49.62 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=26.9
Q ss_pred CCCChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhhc
Q 011270 424 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 424 ~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
||.+... +++.. ..+ +..||+|||+.|+++|++.+.+..
T Consensus 347 G~i~~~~-l~~~~-~~~--~~~vyvCGp~~m~~~v~~~L~~~G 385 (403)
T 1cqx_A 347 GLVDVKQ-IEKSI-LLP--DADYYICGPIPFMRMQHDALKNLG 385 (403)
T ss_dssp SSCCGGG-SHHHH-CCT--TCEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCcCHHH-Hhhcc-CCC--CCEEEEeCCHHHHHHHHHHHHHcC
Confidence 6887543 23211 112 456999999999999999998743
No 50
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=87.41 E-value=0.38 Score=44.73 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=27.7
Q ss_pred CCCChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhhc
Q 011270 424 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 424 ~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+|.+.. ++++.... ...+..||+|||+.|.++|++.+++..
T Consensus 194 g~v~~~-~l~~~~~~-~~~~~~vy~CGp~~m~~~v~~~l~~~G 234 (243)
T 2eix_A 194 GFVSAD-MIKQHFSP-PSSDIKVMMCGPPMMNKAMQGHLETLG 234 (243)
T ss_dssp SSCCHH-HHHHHSCC-TTSSEEEEEESSHHHHHHHHHHHHHHT
T ss_pred CccCHH-HHHHhcCC-CCCCeEEEEECCHHHHHHHHHHHHHcC
Confidence 576632 33332111 124567999999999999999998743
No 51
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=86.54 E-value=0.32 Score=47.90 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=20.7
Q ss_pred cEEEEEeCCcchhHHHHHHhhhhc
Q 011270 443 DIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 443 ~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
+..||+|||+.|.+++++.+++..
T Consensus 301 ~~~vy~CGp~~m~~~v~~~l~~~G 324 (338)
T 1krh_A 301 EVDVYLCGPVPMVEAVRSWLDTQG 324 (338)
T ss_dssp CSEEEEEEEHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCHHHHHHHHHHHHHcC
Confidence 456999999999999999998743
No 52
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=86.02 E-value=0.48 Score=44.52 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.6
Q ss_pred ccEEEEEeCCcchhHHHHHHhhhhc
Q 011270 442 SDIGVLVCGPESMKESVAKTSQRKS 466 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c~~~~ 466 (489)
.+.-||+|||+.|.++|++.+.+..
T Consensus 211 ~~~~vyvCGp~~m~~~v~~~l~~~G 235 (257)
T 2qdx_A 211 QDDRAMICGSPSMLEETSAVLDSFG 235 (257)
T ss_dssp TTEEEEEEECHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC
Confidence 4567999999999999999998743
No 53
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=85.94 E-value=0.69 Score=44.66 Aligned_cols=42 Identities=24% Similarity=0.454 Sum_probs=26.7
Q ss_pred CCCCChHHHHHH----HHhhcCCccEEEEEeCCcchhHHHHHHhhh
Q 011270 423 GGRPNFEEIFSE----LEKETAGSDIGVLVCGPESMKESVAKTSQR 464 (489)
Q Consensus 423 g~RPn~~~i~~~----~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~ 464 (489)
|+|....+.+.+ +.+.....+.-||+|||+.|.++|.+...+
T Consensus 232 ~~~~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp~~m~~~v~~~l~~ 277 (304)
T 2bmw_A 232 GGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPPPMEEGIDAALSA 277 (304)
T ss_dssp SSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECTTHHHHHHHHHHH
T ss_pred CCcceehHHHHHhHHHHHHHhhcCCcEEEEECCHHHHHHHHHHHHH
Confidence 345556655543 221123345679999999999988776654
No 54
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=84.68 E-value=0.79 Score=46.45 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=28.6
Q ss_pred CCCCChHHHHHHHHhh----cCCccEEEEEeCCcchhHHHHHHhhhh
Q 011270 423 GGRPNFEEIFSELEKE----TAGSDIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 423 g~RPn~~~i~~~~~~~----~~~~~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
|+|....+.+.+...+ ....+..||+|||+.|.++|++.+.+.
T Consensus 330 g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGP~~M~~~v~~~L~~~ 376 (402)
T 2b5o_A 330 GGKVYVQSRVSEYADELFEMIQKPNTHVYMCGLKGMQPPIDETFTAE 376 (402)
T ss_dssp SCBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECGGGHHHHHHHHHHH
T ss_pred CCccchHHHHHHhHHHHHHHhccCCcEEEEECCHHHHHHHHHHHHHH
Confidence 3455555655542221 222356799999999999999988774
No 55
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=84.62 E-value=0.62 Score=44.25 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.2
Q ss_pred ccEEEEEeCCcchhHHHHHHhhhh
Q 011270 442 SDIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
.+.-||+|||+.|.++|++.+.+.
T Consensus 225 ~~~~vyvCGp~~m~~~v~~~l~~~ 248 (272)
T 2bgi_A 225 ETDRAMVCGSLAFNVDVMKVLESY 248 (272)
T ss_dssp TTEEEEEEECHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc
Confidence 456799999999999999999874
No 56
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=83.99 E-value=0.77 Score=42.76 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=21.1
Q ss_pred ccEEEEEeCCcchhHHHHHHh-hhh
Q 011270 442 SDIGVLVCGPESMKESVAKTS-QRK 465 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c-~~~ 465 (489)
.+.-||+|||+.|.++|++.+ .+.
T Consensus 205 ~~~~vy~CGp~~m~~~v~~~l~~~~ 229 (248)
T 1fdr_A 205 ETSHVMLCGNPQMVRDTQQLLKETR 229 (248)
T ss_dssp TTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHc
Confidence 567799999999999999998 764
No 57
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=83.84 E-value=0.77 Score=44.60 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=19.9
Q ss_pred ccEEEEEeCCcchhHHHHHHhhhh
Q 011270 442 SDIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
.+.-||+|||+.|.++|++...+.
T Consensus 265 ~~~~vyvCGp~~m~~~v~~~L~~~ 288 (314)
T 1fnb_A 265 DNTYVYMCGLKGMEKGIDDIMVSL 288 (314)
T ss_dssp TTEEEEEEECTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHH
Confidence 456799999999999998877663
No 58
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=76.17 E-value=1 Score=42.62 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=19.9
Q ss_pred ccEEEEEeCCcchhH-HHHHHhhhh
Q 011270 442 SDIGVLVCGPESMKE-SVAKTSQRK 465 (489)
Q Consensus 442 ~~vGV~~CGP~~l~~-~v~~~c~~~ 465 (489)
.+.-||+|||+.|.+ ++.+...+.
T Consensus 241 ~~~~vyvCGp~~m~~~~v~~~L~~~ 265 (275)
T 1umk_A 241 EEPLVLMCGPPPMIQYACLPNLDHV 265 (275)
T ss_dssp GCCEEEEESCHHHHHHTTHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHc
Confidence 345799999999999 888888764
No 59
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=71.01 E-value=2 Score=40.37 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=23.9
Q ss_pred ChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhh
Q 011270 427 NFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRK 465 (489)
Q Consensus 427 n~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~ 465 (489)
.+.+++++. .+ ..--||+|||+.|.+++++ +++.
T Consensus 179 ~v~~~l~~~---~~-~~~~vyvCGp~~m~~~v~~-l~~~ 212 (262)
T 1ep3_B 179 HVGMLMNEI---DF-EVDALYTCGAPAMLKAVAK-KYDQ 212 (262)
T ss_dssp CHHHHHHHC---CS-CCSEEEEESCHHHHHHHHH-HTTT
T ss_pred ehHHHHHhh---cc-CCCEEEEECCHHHHHHHHH-HHhC
Confidence 455655543 12 1346999999999999999 7763
No 60
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=67.65 E-value=1.9 Score=44.04 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=27.3
Q ss_pred eeEEEEEEeCC-----CeEEEEeecC--CCCcccCCeEEEEecCC
Q 011270 88 TCILSARVFPS-----KAIELILPKH--AGLKFTPTSVIFMKIPS 125 (489)
Q Consensus 88 ~~vv~~~~~~~-----~~~~l~~~~~--~~~~~~pGQ~v~l~~p~ 125 (489)
..+++.+.+++ ++..+.+..+ .++.|+||.++-|...+
T Consensus 33 a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N 77 (435)
T 1f20_A 33 ARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGN 77 (435)
T ss_dssp EEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCC
T ss_pred EEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecC
Confidence 46677777752 4677777653 35899999999997654
No 61
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=59.91 E-value=6.4 Score=37.86 Aligned_cols=20 Identities=30% Similarity=0.713 Sum_probs=18.2
Q ss_pred EEEe-CCcchhHHHHHHhhhh
Q 011270 446 VLVC-GPESMKESVAKTSQRK 465 (489)
Q Consensus 446 V~~C-GP~~l~~~v~~~c~~~ 465 (489)
+|+| ||+.|.++|++...+.
T Consensus 269 ~yvCGGp~~m~~~v~~~L~~~ 289 (314)
T 2rc5_A 269 FYICGGPKGMEKGVIEEIQKI 289 (314)
T ss_dssp EEEEESSTTTHHHHHHHHHHH
T ss_pred EEEeCCcHHHHHHHHHHHHHH
Confidence 5999 9999999999998874
No 62
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=58.26 E-value=4.1 Score=40.72 Aligned_cols=38 Identities=8% Similarity=0.186 Sum_probs=27.5
Q ss_pred eeEEEEEEeCC-----CeEEEEeecC-CCCcccCCeEEEEecCC
Q 011270 88 TCILSARVFPS-----KAIELILPKH-AGLKFTPTSVIFMKIPS 125 (489)
Q Consensus 88 ~~vv~~~~~~~-----~~~~l~~~~~-~~~~~~pGQ~v~l~~p~ 125 (489)
..+++.+.+++ ++..+++..+ .++.|+||+++-|..++
T Consensus 14 a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N 57 (374)
T 1ddg_A 14 ASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQN 57 (374)
T ss_dssp EEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCC
T ss_pred EEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCC
Confidence 45667777653 4677777653 46899999999998765
No 63
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=56.66 E-value=4.1 Score=38.19 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=24.2
Q ss_pred CCCChHHHHHHHHhhcCCccEEEEEeCCcchhHH-HHHHhhh
Q 011270 424 GRPNFEEIFSELEKETAGSDIGVLVCGPESMKES-VAKTSQR 464 (489)
Q Consensus 424 ~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~-v~~~c~~ 464 (489)
+|.+-. ++++.-.. ...+.-||+|||+.|.++ +++...+
T Consensus 219 g~v~~~-~l~~~l~~-~~~~~~vyvCGp~~m~~~~~~~~L~~ 258 (270)
T 2cnd_A 219 GFVTEA-VLREHVPE-GGDDTLALACGPPPMIQFAISPNLEK 258 (270)
T ss_dssp SSCCHH-HHHHHSCC-CSSSEEEEEECCHHHHHTTTHHHHHT
T ss_pred ccCCHH-HHHHhcCC-CcCCEEEEEECCHHHHHHHHHHHHHH
Confidence 676643 33332111 123567999999999997 5667665
No 64
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=56.64 E-value=8 Score=38.10 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=22.5
Q ss_pred CeEEEEEeCCC--hhhHHHHHHHHHHhh
Q 011270 198 DSLLLVAGGIG--ITPFLSILQEIASAQ 223 (489)
Q Consensus 198 ~~vvlIAGGiG--ITP~lsil~~l~~~~ 223 (489)
.++++.||||| |.|.+++.++|.+++
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g 30 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARG 30 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCC
Confidence 57899999997 999999999998753
No 65
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=54.40 E-value=5 Score=40.34 Aligned_cols=38 Identities=5% Similarity=0.037 Sum_probs=28.8
Q ss_pred eeEEEEEEeCC-----CeEEEEeecCCCCcccCCeEEEEecCC
Q 011270 88 TCILSARVFPS-----KAIELILPKHAGLKFTPTSVIFMKIPS 125 (489)
Q Consensus 88 ~~vv~~~~~~~-----~~~~l~~~~~~~~~~~pGQ~v~l~~p~ 125 (489)
..+++.+.+++ ++..+.+..+.++.|+||.++-|...+
T Consensus 9 a~v~~n~~Lt~~~~~~~~~hie~~l~~~~~Y~~GD~l~v~p~N 51 (393)
T 4dql_A 9 TNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRN 51 (393)
T ss_dssp EEEEEEEECSCTTCSCCEEEEEEECCTTCCCCTTCEEEECCCC
T ss_pred EEEEeEEEcCCCCCCceEEEEEEECCCCCccCCCCEEEEEccC
Confidence 45677777742 577777876678999999999997654
No 66
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=53.32 E-value=4.3 Score=44.05 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=25.9
Q ss_pred eeEEEEEEeCC-----CeEEEEeecC--CCCcccCCeEEEEecCC
Q 011270 88 TCILSARVFPS-----KAIELILPKH--AGLKFTPTSVIFMKIPS 125 (489)
Q Consensus 88 ~~vv~~~~~~~-----~~~~l~~~~~--~~~~~~pGQ~v~l~~p~ 125 (489)
..+++.+.+++ ++..+.+..+ .++.|+||.++-|..++
T Consensus 254 a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N 298 (688)
T 1tll_A 254 ARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGN 298 (688)
T ss_dssp EEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCC
T ss_pred EEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCC
Confidence 35566666642 4566777543 35899999999997654
No 67
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=44.92 E-value=8.2 Score=40.53 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=27.7
Q ss_pred eeEEEEEEeCC-----CeEEEEeecCC-CCcccCCeEEEEecCCC
Q 011270 88 TCILSARVFPS-----KAIELILPKHA-GLKFTPTSVIFMKIPSI 126 (489)
Q Consensus 88 ~~vv~~~~~~~-----~~~~l~~~~~~-~~~~~pGQ~v~l~~p~~ 126 (489)
..+++.+.+++ ++..+++..+. ++.|+||+++-|..++-
T Consensus 117 a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~ 161 (539)
T 2qtl_A 117 VPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNS 161 (539)
T ss_dssp EEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCC
T ss_pred EEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCC
Confidence 45677777752 56777776543 47899999999987553
No 68
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=42.69 E-value=9.7 Score=41.22 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=17.3
Q ss_pred EEEEEeCC-cchhHHHHHHhhh
Q 011270 444 IGVLVCGP-ESMKESVAKTSQR 464 (489)
Q Consensus 444 vGV~~CGP-~~l~~~v~~~c~~ 464 (489)
--||+||| +.|.++|.+...+
T Consensus 630 ~~vYvCGpa~~M~~~V~~~L~~ 651 (682)
T 2bpo_A 630 AFIYVCGDAKGMAKGVSTALVG 651 (682)
T ss_dssp CEEEEEECSTTHHHHHHHHHHH
T ss_pred cEEEEeCCchHhHHHHHHHHHH
Confidence 45999999 7999888876655
No 69
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=41.70 E-value=9.5 Score=39.19 Aligned_cols=38 Identities=8% Similarity=0.179 Sum_probs=27.7
Q ss_pred eeEEEEEEeCC----CeEEEEeecC-CCCcccCCeEEEEecCC
Q 011270 88 TCILSARVFPS----KAIELILPKH-AGLKFTPTSVIFMKIPS 125 (489)
Q Consensus 88 ~~vv~~~~~~~----~~~~l~~~~~-~~~~~~pGQ~v~l~~p~ 125 (489)
..+++.+.+++ ++..+.+..+ .++.|+||.++-|...+
T Consensus 65 a~v~~n~~Lt~~~~r~~~hie~dl~~s~l~Y~~GD~l~V~p~N 107 (458)
T 3qfs_A 65 AAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPAN 107 (458)
T ss_dssp EEEEEEEECCSSSSSCEEEEEEECTTSCCCCCTTCEEEECCCC
T ss_pred EEEEEEEEcCCCCCCCEEEEEEEeCCCCcccCCCCEEEEEeeC
Confidence 45677777743 5777777654 46899999999997654
No 70
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=39.96 E-value=10 Score=40.52 Aligned_cols=37 Identities=8% Similarity=0.175 Sum_probs=24.5
Q ss_pred eEEEEEEeC----CCeEEEEeecC-CCCcccCCeEEEEecCC
Q 011270 89 CILSARVFP----SKAIELILPKH-AGLKFTPTSVIFMKIPS 125 (489)
Q Consensus 89 ~vv~~~~~~----~~~~~l~~~~~-~~~~~~pGQ~v~l~~p~ 125 (489)
.+++.+.++ .++..+.+..+ .++.|+||.++-|...+
T Consensus 226 ~v~~n~~Lt~~~~~~~~hie~~~~~~~~~Y~~GD~l~V~p~N 267 (618)
T 3qe2_A 226 AVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPAN 267 (618)
T ss_dssp EEEEEEECSCCSSSCEEEEEEECTTSCCCCCTTCEEEECCCC
T ss_pred EEEeEEEcCCCCCCcEEEEEEEcCCCCcccccCCEEEEEcCC
Confidence 455556553 25667777654 36889999999886544
Done!