Query 011271
Match_columns 489
No_of_seqs 156 out of 193
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 23:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2656 DNA methyltransferase 100.0 3E-103 6E-108 796.0 29.2 417 1-489 4-445 (445)
2 PF05499 DMAP1: DNA methyltran 100.0 3.8E-35 8.2E-40 274.6 9.6 161 261-433 1-173 (176)
3 cd00167 SANT 'SWI3, ADA2, N-Co 97.6 3.7E-05 8.1E-10 54.6 2.1 43 168-211 1-44 (45)
4 PF00249 Myb_DNA-binding: Myb- 97.4 6.3E-05 1.4E-09 56.5 1.1 44 168-211 3-47 (48)
5 smart00717 SANT SANT SWI3, AD 97.3 0.00011 2.4E-09 52.8 2.1 45 167-212 2-47 (49)
6 PF13921 Myb_DNA-bind_6: Myb-l 97.0 0.00025 5.4E-09 55.1 1.1 41 169-210 1-41 (60)
7 PLN03212 Transcription repress 96.1 0.012 2.5E-07 59.3 6.2 62 158-220 66-131 (249)
8 PLN03091 hypothetical protein; 96.0 0.0089 1.9E-07 64.3 5.5 63 158-221 55-121 (459)
9 PLN03212 Transcription repress 81.4 0.76 1.7E-05 46.5 1.5 53 162-214 21-74 (249)
10 PF13837 Myb_DNA-bind_4: Myb/S 70.6 1.3 2.8E-05 36.5 -0.2 55 167-221 2-73 (90)
11 PLN03091 hypothetical protein; 61.7 3.8 8.3E-05 44.7 1.2 51 162-212 10-61 (459)
12 cd05126 Mth938 Mth938 domain. 56.1 8.7 0.00019 34.6 2.3 31 368-399 77-107 (117)
13 cd05560 Xcc1710_like Xcc1710_l 55.5 8.8 0.00019 34.0 2.2 32 367-399 69-100 (109)
14 cd00248 Mth938-like Mth938-lik 55.2 10 0.00022 33.5 2.5 32 367-399 69-100 (109)
15 PF04430 DUF498: Protein of un 50.4 8.6 0.00019 33.7 1.4 32 367-399 70-101 (110)
16 PF08963 DUF1878: Protein of u 47.5 9.6 0.00021 34.6 1.2 26 160-185 29-54 (113)
17 cd05125 Mth938_2P1-like Mth938 43.8 17 0.00037 32.7 2.2 31 368-399 72-102 (114)
18 COG1168 MalY Bifunctional PLP- 40.4 21 0.00045 38.6 2.5 26 168-195 174-199 (388)
19 PHA00649 hypothetical protein 38.5 78 0.0017 26.8 5.1 40 366-412 16-55 (83)
20 TIGR01557 myb_SHAQKYF myb-like 35.9 26 0.00057 27.8 1.9 41 168-208 5-50 (57)
21 COG5114 Histone acetyltransfer 34.9 17 0.00037 38.5 0.9 47 164-211 61-108 (432)
22 PF13873 Myb_DNA-bind_5: Myb/S 33.8 43 0.00094 27.0 2.9 49 166-217 2-50 (78)
23 PF03993 DUF349: Domain of Unk 33.5 77 0.0017 25.3 4.3 19 202-220 1-19 (77)
24 KOG0048 Transcription factor, 33.4 23 0.00049 35.2 1.5 53 166-219 62-115 (238)
25 PRK14841 undecaprenyl pyrophos 30.3 39 0.00084 34.1 2.5 83 145-244 45-139 (233)
26 KOG0048 Transcription factor, 28.6 40 0.00086 33.5 2.3 35 167-201 10-45 (238)
27 KOG2656 DNA methyltransferase 28.2 13 0.00028 40.2 -1.3 67 341-416 374-441 (445)
28 PRK14842 undecaprenyl pyrophos 26.7 49 0.0011 33.6 2.5 39 149-194 55-104 (241)
29 PRK14838 undecaprenyl pyrophos 26.3 53 0.0012 33.3 2.7 39 149-194 57-104 (242)
30 KOG1602 Cis-prenyltransferase 25.7 51 0.0011 34.1 2.4 78 149-243 83-174 (271)
31 PF03776 MinE: Septum formatio 25.4 1E+02 0.0022 25.4 3.7 34 186-219 9-45 (70)
32 TIGR00055 uppS undecaprenyl di 24.8 60 0.0013 32.7 2.7 39 149-194 46-95 (226)
33 cd03769 SR_IS607_transposase_l 24.6 80 0.0017 28.5 3.3 54 169-222 74-130 (134)
34 PRK08561 rps15p 30S ribosomal 23.9 91 0.002 29.8 3.6 54 341-412 50-104 (151)
35 PHA02550 32 single-stranded DN 23.7 53 0.0012 34.4 2.2 62 141-220 188-249 (304)
36 KOG0049 Transcription factor, 23.4 40 0.00086 39.0 1.3 47 166-212 305-354 (939)
37 PRK08068 transaminase; Reviewe 23.1 73 0.0016 33.0 3.1 27 168-195 183-209 (389)
38 PRK14827 undecaprenyl pyrophos 22.2 69 0.0015 33.5 2.7 39 149-194 114-163 (296)
39 PRK14829 undecaprenyl pyrophos 22.0 72 0.0016 32.3 2.7 79 149-244 61-150 (243)
40 cd03007 PDI_a_ERp29_N PDIa fam 21.6 86 0.0019 28.3 2.9 29 178-206 68-110 (116)
41 PTZ00349 dehydrodolichyl dipho 21.3 76 0.0017 33.6 2.8 79 149-244 66-158 (322)
42 cd00475 CIS_IPPS Cis (Z)-Isopr 21.2 77 0.0017 31.6 2.7 39 149-194 47-96 (221)
43 PF07357 DRAT: Dinitrogenase r 21.1 55 0.0012 33.8 1.6 38 144-182 116-160 (262)
44 PRK14840 undecaprenyl pyrophos 20.1 79 0.0017 32.3 2.5 39 149-194 69-118 (250)
45 COG1730 GIM5 Predicted prefold 20.0 1.9E+02 0.0041 27.4 4.8 66 391-456 20-90 (145)
No 1
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.8e-103 Score=796.02 Aligned_cols=417 Identities=40% Similarity=0.604 Sum_probs=322.8
Q ss_pred CchhhhhCCCCCCC-CCc-ccccCCCCCCCCCCCCCccHHHHHhhCC-CCCCCccccccccccCCCCC-CCCCceecccc
Q 011271 1 MDAKDILGIPKTQL-PTT-QEKKSRPQKEPQRKPDGISREVYALTGG-LAPLMPSIDVSQLKKRPPSD-EKITWQWLPFT 76 (489)
Q Consensus 1 ~DvrDiL~lp~~~~-~~~-~~kk~~~~~~~~krp~Gm~REv~aL~G~-~~P~~p~~~~~~~K~k~~~~-~~~~W~~~pF~ 76 (489)
+||||||+||+.+. .+. +.+|.+++....+||+||+||||||||+ .||++|+++. .||+++..+ ++++|.|+||+
T Consensus 4 aDirDIL~l~~~t~~~~~kq~s~~rs~t~s~rrPeGm~REvyaLlg~n~pPL~ps~~~-~fkek~l~s~K~~~W~w~pFt 82 (445)
T KOG2656|consen 4 ADIRDILELPQKTRSLTNKQKSKPRSSTESRRRPEGMSREVYALLGENAPPLLPSDTN-NFKEKRLGSKKVRPWKWVPFT 82 (445)
T ss_pred ccHHHHhcCCCCCCCCcccccccCCCchhccCCCcchhHHHHHHhcCCCCCccccccc-hhhhccCccccCCCceeeccC
Confidence 69999999998432 222 3344466677789999999999999997 5889998874 488776655 77799999999
Q ss_pred ccccCCCeEEeccccccccccccccccccccccccceeccccccccccccccccccCCCCCCCCCCcccccccccccccC
Q 011271 77 NSARKDNLQLYHWVGFGNFWKCFHELGKRSFLMWGVVYNIFFNFFGVSHAFQVRVVNGVPPTGDYSFAKYNKSVDVVKYT 156 (489)
Q Consensus 77 N~AR~D~L~L~HW~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~y~FAKfN~kv~vp~Yt 156 (489)
||||+|+++||||| ++. +..+||||||||++|+||.||
T Consensus 83 n~aRkD~~~l~HWv---------------------------------------r~~---d~~~dypfakfNk~vdipsYt 120 (445)
T KOG2656|consen 83 NSARKDDATLHHWV---------------------------------------RVG---DTPKDYPFAKFNKHVDIPSYT 120 (445)
T ss_pred CccccCCceEEeee---------------------------------------ecc---CCCCCCchhhhccccCccccc
Confidence 99999999999999 432 246799999999999999999
Q ss_pred HHHHHhhhcCCCCChHHHHHHHHHhhhcCcceEEEecCCC-----CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 011271 157 DEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFP-----SSRTVEELKDRYYGVSRAILIARAPSPTDVSGHPL 231 (489)
Q Consensus 157 deEY~~~L~d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~-----~~Rt~EdLK~RYY~V~~kl~~~r~~~~~e~~~~~l 231 (489)
|+||+.||.|+.||+|||||||+||++||||||||+|||+ .+|||||||+|||+||++|+.+|++++++. +
T Consensus 121 ~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s~sdl----l 196 (445)
T KOG2656|consen 121 DEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPSNSDL----L 196 (445)
T ss_pred hHHHHHhhccccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCCchhh----h
Confidence 9999999999999999999999999999999999999985 579999999999999999999999876551 2
Q ss_pred cCCCCChHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CcccCCCccccccccccC-----
Q 011271 232 VKDPYNVSQEVERKRALSMVLSQTKHQERKDAEVLAEAKRITDSRMASRAAEEPEM-PVASHVGSESADRAVVLG----- 305 (489)
Q Consensus 232 ~~~~fd~~~E~~RK~~l~~l~~RT~eq~~EEe~L~~ElkrIe~~r~ker~~ke~~l-~~as~~~~~~~~~~~~~~----- 305 (489)
-.++||++||++||+||++||+||++||+||++|++|+|+||+ |++++..+.+++ ...++++.+.......++
T Consensus 197 k~~~yd~e~Er~RKk~L~~L~sRt~~qvaEEe~Ll~E~KkiEa-rkke~~~~~~~l~rlld~ad~~i~~~stS~~~~~~~ 275 (445)
T KOG2656|consen 197 KSLVYDAEHERERKKYLERLLSRTPEQVAEEEALLVELKKIEA-RKKERLAERQDLLRLLDSADGDITQYSTSPGMSSLE 275 (445)
T ss_pred hccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HhhhhhhhhHHHHHhhhcccccccccccChhHHHHH
Confidence 2379999999999999999999999999999999999999996 667777776553 222222211000000000
Q ss_pred -CCCCCCCCCC--CCCCccCCCcccccchhhhhhhhcccceEeehHHHHHHHHhhcccchhhHHHHHHHHHHHhCCCCCC
Q 011271 306 -DTVSPSSNIQ--LPSATVVPSTSIIADSASTLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKP 382 (489)
Q Consensus 306 -~~~~p~s~~~--~p~~~~~~~~~~~~~~~~~~~~~r~~GVyLRS~~l~~~~~a~~~~~g~k~~KrIe~~L~ELgv~~kP 382 (489)
....+..-.. .+..++.+. .+...+.+.++.++..||.||+++| ..++++|++++|+++|+|+||||.+.|
T Consensus 276 ~~~~a~kt~~k~~~a~v~a~~~-~s~~ss~~~F~~~~~~l~tlr~q~m-----~~panvgqrkiK~~EQ~lq~~~v~~sp 349 (445)
T KOG2656|consen 276 NALLAKKTRQKKHEANVPASPR-ESWMSSGIKFADLRVALVTLRSQRM-----KQPANVGQRKIKRLEQELQELGVRLSP 349 (445)
T ss_pred HHHhhhhhhcccccccCccccc-hhhhhhhhhcccchhhhhccchhhc-----cCccccchhhhHHHHHHHHHhccCCCC
Confidence 0000000000 000000110 1234456778888888999999987 467889999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCc-ccCCCCCcccccccCCCCCcccccCcCCCcccccccc
Q 011271 383 KVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSYRDGS-YIDMPGTPKRSQRAGDQDRTFVPESINFGGERVGKRD 461 (489)
Q Consensus 383 ~mPT~~Vc~~f~eLR~~Iv~LleLkK~l~k~E~El~~lr~~~-~~~~P~tp~~~~r~~~~~~~~~~~~~~~~~~r~~k~~ 461 (489)
.||+.||..|+|||++|++|++|+.++..|++|+++++|++ +++++.. +.++...++-++..+-+
T Consensus 350 -~pte~l~~~fnElrs~vvtl~eL~~~l~~~~~e~~s~k~~~~~~~~~~~-------------~l~~P~~p~~~~~~~~e 415 (445)
T KOG2656|consen 350 -APTEQLCKSFNELRSDVVTLLELSPALYLCEYELSSLKHALNEALAILQ-------------ELSLPSRPVLPPFDVME 415 (445)
T ss_pred -CCHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhhhhhhhhhhhhhhhhh-------------hcCCCCCCCCCCcchhh
Confidence 89999999999999999999999999999999999999998 4444322 33333333334444444
Q ss_pred cccc-----CCCCCCCCCCCCCCCCccc-ccCCC
Q 011271 462 QKRK-----GPGRLSEAPSSPAHKRPRK-KASDL 489 (489)
Q Consensus 462 ~krk-----~~~r~~~~~~~~~~~~~~~-~~~~~ 489 (489)
+|++ +| +.-||++|+|+|+ +||++
T Consensus 416 ~~~~~~~~~~p----~g~~~~~h~~kr~~~as~~ 445 (445)
T KOG2656|consen 416 RKESTLKKIGP----LGIPSKKHVRKREAGASIT 445 (445)
T ss_pred hhhhhcccCCC----CCCCcccccchhhcccccC
Confidence 4333 44 3345999999999 99975
No 2
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=3.8e-35 Score=274.59 Aligned_cols=161 Identities=27% Similarity=0.391 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCC----cccCCCc--------cccccccccCCCCCCCCCCCCCCCccCCCcccc
Q 011271 261 KDAEVLAEAKRITDSRMASRAAEEPEMP----VASHVGS--------ESADRAVVLGDTVSPSSNIQLPSATVVPSTSII 328 (489)
Q Consensus 261 EEe~L~~ElkrIe~~r~ker~~ke~~l~----~as~~~~--------~~~~~~~~~~~~~~p~s~~~~p~~~~~~~~~~~ 328 (489)
||++|+.|||+||+ |+++|++++++|. +++.... ...++..... .++....+... ..+....
T Consensus 1 EEe~Li~ELrKIE~-RKkEREKK~qDLqkLit~ad~~~~~~~~~a~~rk~ekk~~kK----k~~~~~~~~~~-~~~~~v~ 74 (176)
T PF05499_consen 1 EEEMLIAELRKIEA-RKKEREKKTQDLQKLITAADQQPTPATNTAEARKTEKKSSKK----KLPQKARPSKK-KESPAVP 74 (176)
T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccCCCCCccHhhhhhhhccCCc----ccccCCCcccc-cccccch
Confidence 79999999999995 8899999998863 2221110 1111111011 01111111100 0111112
Q ss_pred cchhhhhhhhcccceEeehHHHHHHHHhhcccchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 011271 329 ADSASTLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQK 408 (489)
Q Consensus 329 ~~~~~~~~~~r~~GVyLRS~~l~~~~~a~~~~~g~k~~KrIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~Iv~LleLkK 408 (489)
+.+++.|++++++||||||++| ++|+++|++++|+|+++|+||||+++| |||+.||+.||+||++|++|+|||+
T Consensus 75 ~~agikFpd~k~~GV~LRSq~m-----klp~~vGqKk~K~iEq~L~elgv~~~P-mPTe~Ic~~fneLRsdivlL~eLk~ 148 (176)
T PF05499_consen 75 ETAGIKFPDFKSAGVHLRSQRM-----KLPSSVGQKKTKAIEQFLQELGVDLNP-MPTEEICQEFNELRSDIVLLYELKQ 148 (176)
T ss_pred hhhccccccccCCceEeeeccc-----ccCcchhhHHHHHHHHHHHHcCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788999999999999998 689999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHhhhhhccCcccCCCCCcc
Q 011271 409 QLQYKEAEGSSYRDGSYIDMPGTPK 433 (489)
Q Consensus 409 ~l~k~E~El~~lr~~~~~~~P~tp~ 433 (489)
++++||+|+++|||++++++||-+-
T Consensus 149 a~~~~E~El~~lr~r~eal~~gk~~ 173 (176)
T PF05499_consen 149 ALQNCEYELQSLRHRYEALAPGKTL 173 (176)
T ss_pred HHHHhHHHHHHHHHHHHhhCCCCCC
Confidence 9999999999999999999999754
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.58 E-value=3.7e-05 Score=54.64 Aligned_cols=43 Identities=28% Similarity=0.594 Sum_probs=40.1
Q ss_pred CCChHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHH
Q 011271 168 MWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGV 211 (489)
Q Consensus 168 ~WTkeETDyLfdLc~~fD-LRfiVI~DRy~~~Rt~EdLK~RYY~V 211 (489)
.||.||...|+.+|+.|+ ..|-.|+..++. ||.++++.|||.+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~-rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCC-CCHHHHHHHHHHh
Confidence 499999999999999999 999999999865 9999999999975
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.37 E-value=6.3e-05 Score=56.48 Aligned_cols=44 Identities=32% Similarity=0.669 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHhhhcCcc-eEEEecCCCCCCCHHHHHHHHHHH
Q 011271 168 MWTKEETDQLFELCERFDLR-FIVIADRFPSSRTVEELKDRYYGV 211 (489)
Q Consensus 168 ~WTkeETDyLfdLc~~fDLR-fiVI~DRy~~~Rt~EdLK~RYY~V 211 (489)
.||.||.+.|.++++.|+-. |-.|++.++..||..+++.|||..
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 69999999999999999999 999999999999999999999963
No 5
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.35 E-value=0.00011 Score=52.84 Aligned_cols=45 Identities=31% Similarity=0.609 Sum_probs=41.6
Q ss_pred CCCChHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHHH
Q 011271 167 PMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVS 212 (489)
Q Consensus 167 ~~WTkeETDyLfdLc~~fD-LRfiVI~DRy~~~Rt~EdLK~RYY~V~ 212 (489)
..||.+|...|..++..|+ .+|-.|+..++ .||..+++.|||.+-
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 4699999999999999999 99999998887 899999999999863
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.02 E-value=0.00025 Score=55.08 Aligned_cols=41 Identities=32% Similarity=0.647 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHH
Q 011271 169 WTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 210 (489)
Q Consensus 169 WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~ 210 (489)
||.||.+.|+.|+..|+-.|--|+..+ +.||..+++.||+.
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l-~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHL-GNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHS-TTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHH-CcCCHHHHHHHHHH
Confidence 999999999999999999999999999 48999999999999
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.09 E-value=0.012 Score=59.26 Aligned_cols=62 Identities=26% Similarity=0.358 Sum_probs=53.7
Q ss_pred HHHHhhhc----CCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 011271 158 EEYEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARA 220 (489)
Q Consensus 158 eEY~~~L~----d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~kl~~~r~ 220 (489)
+=|..||. ...||.||-+.|+++...|+=+|..|+..+ ..||=-++|.|||++.++.+..+.
T Consensus 66 eRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKWs~IAk~L-pGRTDnqIKNRWns~LrK~l~r~~ 131 (249)
T PLN03212 66 LRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRI-PGRTDNEIKNYWNTHLRKKLLRQG 131 (249)
T ss_pred HHHHHhhchhcccCCCChHHHHHHHHHHHhccccHHHHHhhc-CCCCHHHHHHHHHHHHhHHHHhcC
Confidence 33777764 568999999999999999999999999877 569999999999999999877654
No 8
>PLN03091 hypothetical protein; Provisional
Probab=96.04 E-value=0.0089 Score=64.28 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=54.5
Q ss_pred HHHHhhhc----CCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 011271 158 EEYEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARAP 221 (489)
Q Consensus 158 eEY~~~L~----d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~kl~~~r~~ 221 (489)
+=|..||. ...||+||-..|++|...|+=+|..|+..+ ..||--++|.|||++.++.+..+.-
T Consensus 55 ERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKWskIAk~L-PGRTDnqIKNRWnslLKKklr~~~I 121 (459)
T PLN03091 55 LRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQL-PGRTDNEIKNLWNSCLKKKLRQRGI 121 (459)
T ss_pred HHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcchHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 44666664 458999999999999999999999999766 5899999999999999999887754
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=81.40 E-value=0.76 Score=46.54 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=45.5
Q ss_pred hhhcCCCCChHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHHHHH
Q 011271 162 KYLTDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVSRA 214 (489)
Q Consensus 162 ~~L~d~~WTkeETDyLfdLc~~fD-LRfiVI~DRy~~~Rt~EdLK~RYY~V~~k 214 (489)
.-|+-..||.||-..|+.++++|. -+|-.|+-+.+..||--+.++||+.+-+-
T Consensus 21 ~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P 74 (249)
T PLN03212 21 MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRP 74 (249)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhch
Confidence 345566899999999999999998 58999998877789999999999987643
No 10
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=70.56 E-value=1.3 Score=36.47 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=38.7
Q ss_pred CCCChHHHHHHHHHhhh--cCcce------------EEEecCC---CCCCCHHHHHHHHHHHHHHHHHhcCC
Q 011271 167 PMWTKEETDQLFELCER--FDLRF------------IVIADRF---PSSRTVEELKDRYYGVSRAILIARAP 221 (489)
Q Consensus 167 ~~WTkeETDyLfdLc~~--fDLRf------------iVI~DRy---~~~Rt~EdLK~RYY~V~~kl~~~r~~ 221 (489)
..||.+||..|+++..+ ++++| -.|++.. +..||.++++.++=.+.+.+-..+..
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~ 73 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDR 73 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 46999999999999999 66654 2333332 35799999999999999999887754
No 11
>PLN03091 hypothetical protein; Provisional
Probab=61.67 E-value=3.8 Score=44.74 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=43.1
Q ss_pred hhhcCCCCChHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHHH
Q 011271 162 KYLTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGVS 212 (489)
Q Consensus 162 ~~L~d~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~~~Rt~EdLK~RYY~V~ 212 (489)
.-|+-..||.||-..|..++.+|+- .|..|+...+..||--+.++||+.+-
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhcc
Confidence 4456678999999999999999996 59999877667899999999997654
No 12
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=56.12 E-value=8.7 Score=34.57 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 011271 368 RVEQALQELGVNLKPKVPTKAVCAEHLELRKE 399 (489)
Q Consensus 368 rIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 399 (489)
.+-+.|.+.||..-. |+|.+.|..||.|.++
T Consensus 77 ~~~~~l~~~Gi~ve~-m~T~aAcrTYN~L~~E 107 (117)
T cd05126 77 ETVEKLEKRGVEVLV-LPTEEAVKRYNELAGK 107 (117)
T ss_pred HHHHHHHhcCCEEEE-cChHHHHHHHHHHHhC
Confidence 566699999999776 9999999999999864
No 13
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=55.53 E-value=8.8 Score=33.96 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 011271 367 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 399 (489)
Q Consensus 367 KrIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 399 (489)
..+.+.|.+.||..-. |+|.+-|..||.|.++
T Consensus 69 ~~~~~~l~~~gi~vE~-m~T~~AcrTyN~L~~E 100 (109)
T cd05560 69 PALLAPLLARGIGVEV-MDTQAACRTYNILMGE 100 (109)
T ss_pred HHHHHHHHHcCCeEEE-ECHHHHHHHHHHHHhC
Confidence 3577889999999776 9999999999999754
No 14
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=55.23 E-value=10 Score=33.50 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 011271 367 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 399 (489)
Q Consensus 367 KrIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 399 (489)
..+-..|.+.||..-. |+|.+-|..||.|.++
T Consensus 69 ~~~~~~l~~~gI~vE~-m~T~aAcrTyNiL~~E 100 (109)
T cd00248 69 RALRAALRAAGIGVEV-MSTGAACRTYNVLLSE 100 (109)
T ss_pred HHHHHHHHHcCCeEEE-eCcHHHHHHHHHHHhC
Confidence 4678899999999776 9999999999999764
No 15
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=50.41 E-value=8.6 Score=33.70 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 011271 367 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 399 (489)
Q Consensus 367 KrIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 399 (489)
..+...|++.||..-- |+|.+-|..||.|.++
T Consensus 70 ~~~~~~l~~~GI~ve~-m~T~~Ac~tyN~L~~E 101 (110)
T PF04430_consen 70 PELREYLRKKGIGVEV-MDTPAACRTYNILASE 101 (110)
T ss_dssp HHHHHHHHTTT-EEEE-E-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCeEEE-ECHHHHHHHHHHHHhC
Confidence 4688899999999665 9999999999999875
No 16
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=47.51 E-value=9.6 Score=34.57 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=18.4
Q ss_pred HHhhhcCCCCChHHHHHHHHHhhhcC
Q 011271 160 YEKYLTDPMWTKEETDQLFELCERFD 185 (489)
Q Consensus 160 Y~~~L~d~~WTkeETDyLfdLc~~fD 185 (489)
|...+-..+||++|++-.++||++++
T Consensus 29 Fy~LvI~~~Ltkeevee~~~lce~l~ 54 (113)
T PF08963_consen 29 FYALVIRKGLTKEEVEEFLRLCEELS 54 (113)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 33444457899999999999999854
No 17
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=43.81 E-value=17 Score=32.68 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 011271 368 RVEQALQELGVNLKPKVPTKAVCAEHLELRKE 399 (489)
Q Consensus 368 rIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 399 (489)
.+-..|.+.||..-. |+|.+-|..||.|.++
T Consensus 72 ~~~~~l~~~gi~vev-m~T~~AcrtyN~L~~E 102 (114)
T cd05125 72 ELRKYFKKLGIAVEV-VDTRNACATFNFLAEE 102 (114)
T ss_pred HHHHHHHHcCCEEEE-ECHHHHHHHHHHHHhC
Confidence 567888999999765 9999999999999753
No 18
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=40.40 E-value=21 Score=38.62 Aligned_cols=26 Identities=50% Similarity=0.912 Sum_probs=22.9
Q ss_pred CCChHHHHHHHHHhhhcCcceEEEecCC
Q 011271 168 MWTKEETDQLFELCERFDLRFIVIADRF 195 (489)
Q Consensus 168 ~WTkeETDyLfdLc~~fDLRfiVI~DRy 195 (489)
-||+||---|-+||++||+| ||.|=.
T Consensus 174 vwt~eeL~~i~elc~kh~v~--VISDEI 199 (388)
T COG1168 174 VWTKEELRKIAELCLRHGVR--VISDEI 199 (388)
T ss_pred cccHHHHHHHHHHHHHcCCE--EEeecc
Confidence 59999999999999999997 667754
No 19
>PHA00649 hypothetical protein
Probab=38.50 E-value=78 Score=26.82 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011271 366 IKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQY 412 (489)
Q Consensus 366 ~KrIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~Iv~LleLkK~l~k 412 (489)
-+.|.++|.-|||+.+- |- .| +|+|.++.-+-..||+.++
T Consensus 16 ~rAV~~~~~~LGVD~~~--P~-~V----EEFr~D~~~~Rr~RKA~D~ 55 (83)
T PHA00649 16 DRAVKKVFAILGVDVDV--PE-QV----EEFREDLRFGRRMRKAADH 55 (83)
T ss_pred HHHHHHHHHHHcCCCCC--HH-HH----HHHHHHHHHHHHHHHHhhc
Confidence 36899999999999763 43 23 8999999999999999873
No 20
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=35.90 E-value=26 Score=27.83 Aligned_cols=41 Identities=12% Similarity=0.327 Sum_probs=35.1
Q ss_pred CCChHHHHHHHHHhhhcCc-ce---EEEecCCCCCC-CHHHHHHHH
Q 011271 168 MWTKEETDQLFELCERFDL-RF---IVIADRFPSSR-TVEELKDRY 208 (489)
Q Consensus 168 ~WTkeETDyLfdLc~~fDL-Rf---iVI~DRy~~~R-t~EdLK~RY 208 (489)
.||.||-....+-++.|+. -| --|.+-+...+ |.++++..+
T Consensus 5 ~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~ 50 (57)
T TIGR01557 5 VWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHL 50 (57)
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHH
Confidence 5999999999999999998 89 77777777666 999888765
No 21
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=34.90 E-value=17 Score=38.53 Aligned_cols=47 Identities=30% Similarity=0.450 Sum_probs=41.8
Q ss_pred hcCCCCChHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 011271 164 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 211 (489)
Q Consensus 164 L~d~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~~~Rt~EdLK~RYY~V 211 (489)
+-+++|+-.|--.|++-|...+| .|-=|+|-.+ .|+-||.|+-||..
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~ 108 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKM 108 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHH
Confidence 45789999999999999999998 6888888666 99999999999864
No 22
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=33.80 E-value=43 Score=27.03 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=33.0
Q ss_pred CCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 011271 166 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILI 217 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~kl~~ 217 (489)
.+.||.+|+..|++|+++| ..||.+++...-|..+-..=+-.|+..|..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~---~~il~~k~~~~~~~~~k~~~W~~I~~~lN~ 50 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKH---KDILENKFSDSVSNKEKRKAWEEIAEELNA 50 (78)
T ss_pred CCCCCHHHHHHHHHHHHHh---HHHHhcccccHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999884 456666655445555544445555555544
No 23
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=33.52 E-value=77 Score=25.31 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 011271 202 EELKDRYYGVSRAILIARA 220 (489)
Q Consensus 202 EdLK~RYY~V~~kl~~~r~ 220 (489)
|+|..||..+|..+...+.
T Consensus 1 d~Lw~~F~~a~~~~~~~~~ 19 (77)
T PF03993_consen 1 DELWKRFRAACDAFFDRRK 19 (77)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5789999999999988775
No 24
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=33.40 E-value=23 Score=35.22 Aligned_cols=53 Identities=25% Similarity=0.380 Sum_probs=40.6
Q ss_pred CCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHH-HHHHHHhc
Q 011271 166 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGV-SRAILIAR 219 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V-~~kl~~~r 219 (489)
-..||.||.+.|+.|-..|+-||-+|+=+. +.||=-++|--.=+- .+++....
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GNrWs~IA~~L-PGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGNRWSLIAGRL-PGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCcHHHHHHhhC-CCcCHHHHHHHHHHHHHHHHHHcC
Confidence 468999999999999999999999998554 468888887654333 44444443
No 25
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.33 E-value=39 Score=34.06 Aligned_cols=83 Identities=12% Similarity=0.188 Sum_probs=47.8
Q ss_pred cccc-cccccccCHHHHHhhhcCCCCChHHHHHHHHHhhh-----------cCcceEEEecCCCCCCCHHHHHHHHHHHH
Q 011271 145 KYNK-SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCER-----------FDLRFIVIADRFPSSRTVEELKDRYYGVS 212 (489)
Q Consensus 145 KfN~-kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~~-----------fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~ 212 (489)
.+++ .|+|+-||-|-+.+ +++|.++||+|+++ .+.|.-||-|+= .=-++|++..-.
T Consensus 45 ~lgIk~lTvYaFS~eN~~R-------~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~---~Lp~~~~~~i~~-- 112 (233)
T PRK14841 45 ELGIKYLTAFSFSTENWKR-------PKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKE---GLPEKVLKKWQE-- 112 (233)
T ss_pred HcCCCEEEEEeeeHhhcCC-------CHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeChh---hCCHHHHHHHHH--
Confidence 3443 46778888876652 67999999999864 478888887752 112344433222
Q ss_pred HHHHHhcCCCCCCCCCCCccCCCCChHHHHHH
Q 011271 213 RAILIARAPSPTDVSGHPLVKDPYNVSQEVER 244 (489)
Q Consensus 213 ~kl~~~r~~~~~e~~~~~l~~~~fd~~~E~~R 244 (489)
+.+.-..+ +. .+-.+-++|+-..|..+
T Consensus 113 --~e~~T~~~-~~--~~Lnia~~Yggr~EI~~ 139 (233)
T PRK14841 113 --VEEKTKEF-DR--MTLVIAFNYGGRREILD 139 (233)
T ss_pred --HHHHhcCC-CC--cEEEEEecCCCHHHHHH
Confidence 22221111 11 11123378999888743
No 26
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=28.61 E-value=40 Score=33.53 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=30.1
Q ss_pred CCCChHHHHHHHHHhhhcCcc-eEEEecCCCCCCCH
Q 011271 167 PMWTKEETDQLFELCERFDLR-FIVIADRFPSSRTV 201 (489)
Q Consensus 167 ~~WTkeETDyLfdLc~~fDLR-fiVI~DRy~~~Rt~ 201 (489)
..||.||-+-|.++++.|+-+ |..|....+-.|+=
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~G 45 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCG 45 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccc
Confidence 679999999999999999988 99999888644443
No 27
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=28.18 E-value=13 Score=40.21 Aligned_cols=67 Identities=27% Similarity=0.349 Sum_probs=52.5
Q ss_pred cceEeehHHHHHHHHhhcccchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 011271 341 LRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTL-LNLQKQLQYKEAE 416 (489)
Q Consensus 341 ~GVyLRS~~l~~~~~a~~~~~g~k~~KrIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~Iv~L-leLkK~l~k~E~E 416 (489)
+++|++++.+..+.+.. ..+-..|++|++|..|.||...+++.-+.+...|..+ .++++++.+.+.-
T Consensus 374 ~~l~~~~~e~~s~k~~~---------~~~~~~~~~l~~P~~p~~~~~~~~e~~~~~~~~~~p~g~~~~~h~~kr~~~ 441 (445)
T KOG2656|consen 374 PALYLCEYELSSLKHAL---------NEALAILQELSLPSRPVLPPFDVMERKESTLKKIGPLGIPSKKHVRKREAG 441 (445)
T ss_pred Hhhhhhhhhhhhhhhhh---------hhhhhhhhhcCCCCCCCCCCcchhhhhhhhcccCCCCCCCcccccchhhcc
Confidence 68999999987766543 4566788999999999999999999888888877776 6666666665543
No 28
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.70 E-value=49 Score=33.59 Aligned_cols=39 Identities=18% Similarity=0.428 Sum_probs=30.3
Q ss_pred cccccccCHHHHHhhhcCCCCChHHHHHHHHHhhhc-----------CcceEEEecC
Q 011271 149 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 194 (489)
Q Consensus 149 kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~~f-----------DLRfiVI~DR 194 (489)
.|+|+.||-|-+.+ +.+|.+.||+|+++| +.|.-||-|+
T Consensus 55 ~vTvYaFS~eN~~R-------~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iG~~ 104 (241)
T PRK14842 55 NISLYAFSTENWKR-------PITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSR 104 (241)
T ss_pred EEEEEEeehhhcCC-------CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh
Confidence 47788888877653 679999999998875 6777777765
No 29
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.29 E-value=53 Score=33.29 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=30.7
Q ss_pred cccccccCHHHHHhhhcCCCCChHHHHHHHHHhh---------hcCcceEEEecC
Q 011271 149 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE---------RFDLRFIVIADR 194 (489)
Q Consensus 149 kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~---------~fDLRfiVI~DR 194 (489)
.|+|+.||-|-+. =+++|.++||+|+. +++.|.-||-|+
T Consensus 57 ~lT~YaFS~EN~k-------R~~~Ev~~Lm~l~~~~l~~~~~~~~~irir~iG~~ 104 (242)
T PRK14838 57 FLTLYTFSTENWN-------RPSDEVAALMSLLLDSIEEETFMKNNIRFRIIGDI 104 (242)
T ss_pred EEEEEeechhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCh
Confidence 4677888887665 26799999999976 478888888866
No 30
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=25.71 E-value=51 Score=34.07 Aligned_cols=78 Identities=24% Similarity=0.264 Sum_probs=49.7
Q ss_pred cccccccCHHHHHhhhcCCCCChHHHHHHHHHhh--------------hcCcceEEEecCCCCCCCHHHHHHHHHHHHHH
Q 011271 149 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE--------------RFDLRFIVIADRFPSSRTVEELKDRYYGVSRA 214 (489)
Q Consensus 149 kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~--------------~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~k 214 (489)
-|+|+.|+-|-+. =++||.|-||+|.+ +|+.|+.||-|.=- |-++.-....+
T Consensus 83 ~vT~fAFSieNFk-------Rs~eEVd~LM~L~~~k~~~~~~~~~~~~~~gvririiGdlsl-------L~~~l~k~i~~ 148 (271)
T KOG1602|consen 83 EVTVFAFSIENFK-------RSPEEVDGLMDLALEKIERLLEQGEKLDKYGVRIRVIGDLSL-------LPESLRKAIKK 148 (271)
T ss_pred EEEEEEEehhhhC-------CCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCeEEEEEcchhh-------CCHHHHHHHHH
Confidence 3667777777665 37899999999976 48999999987532 22333344555
Q ss_pred HHHhcCCCCCCCCCCCccCCCCChHHHHH
Q 011271 215 ILIARAPSPTDVSGHPLVKDPYNVSQEVE 243 (489)
Q Consensus 215 l~~~r~~~~~e~~~~~l~~~~fd~~~E~~ 243 (489)
+.++-..+ +. .+-.+-++|...+|.-
T Consensus 149 ieE~Tknn-~~--~~L~vcf~Ytsr~EI~ 174 (271)
T KOG1602|consen 149 IEEATKNN-TR--LILNVCFAYTSRDEIL 174 (271)
T ss_pred HHHHhhcC-Cc--eEEEEEeccCcHHHHH
Confidence 55553322 11 1223447888887765
No 31
>PF03776 MinE: Septum formation topological specificity factor MinE; InterPro: IPR005527 Cytokinesis needs to be regulated spatially in order to ensure that it occurs between the daughter genomes. In prokaryotes such as Escherichia coli, cytokinesis is initiated by FtsZ, a tubulin-like protein that assembles into a ring structure at the cell centre called the Z ring. A fundamental problem in prokaryotic cell biology is to understand how the midcell division site is identified. Two major negative regulatory systems are known to be involved in preventing Z-ring assembly at all sites except the midcell. One of these systems, called nucleoid occlusion, blocks Z-ring assembly in the area occupied by an unsegregated nucleoid until a critical stage in chromosome replication or segregation is reached. The other system consists of three proteins, MinC, MinD and MinE, which prevent assembly of Z rings in regions of the cell not covered by the nucleoid, such as the cell poles. MinC is an inhibitor of FtsZ polymerisation, resulting in the inhibition of Z ring assembly in the cell; MinD greatly enhances the inhibitory effects of MinC in vivo; and MinE antagonizes the effects of MinC and MinD []. MinE is a small bifunctional protein. The amino terminus of MinE is required to interact with MinD, while the carboxyl terminus is required for `topological specificity' - that is, the ability of MinE to antagonise MinCD inhibition of Z rings at the midcell position but not at the poles.; GO: 0032955 regulation of barrier septum formation, 0051301 cell division; PDB: 2KXO_A 3MCD_B 3KU7_A 3R9J_C 3R9I_E 1EV0_B.
Probab=25.43 E-value=1e+02 Score=25.36 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=28.0
Q ss_pred cceEEEecCCCC-C--CCHHHHHHHHHHHHHHHHHhc
Q 011271 186 LRFIVIADRFPS-S--RTVEELKDRYYGVSRAILIAR 219 (489)
Q Consensus 186 LRfiVI~DRy~~-~--Rt~EdLK~RYY~V~~kl~~~r 219 (489)
|..+++|||-+. + -.|+.||.=-..|..+++..-
T Consensus 9 Lk~iL~~dR~~~~~~~~~l~~lk~eil~viskYv~i~ 45 (70)
T PF03776_consen 9 LKLILAHDRGGLSPQPDYLEQLKKEILEVISKYVEID 45 (70)
T ss_dssp EEEEEEEECCSC-CTTSSHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhheecC
Confidence 788999999973 4 699999999999999998764
No 32
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=24.76 E-value=60 Score=32.65 Aligned_cols=39 Identities=33% Similarity=0.659 Sum_probs=30.9
Q ss_pred cccccccCHHHHHhhhcCCCCChHHHHHHHHHhh-----------hcCcceEEEecC
Q 011271 149 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE-----------RFDLRFIVIADR 194 (489)
Q Consensus 149 kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~-----------~fDLRfiVI~DR 194 (489)
.|+|+.||-|-+.+ +++|.++||+|.+ +++.|.-||-|+
T Consensus 46 ~lT~yaFStEN~~R-------p~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~ 95 (226)
T TIGR00055 46 CLTLYAFSTENWKR-------PKEEVDFLMELFEKKLDREVKELHRYNVRIRIIGDL 95 (226)
T ss_pred EEEEEEeehhhcCc-------CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh
Confidence 46778888876652 6799999999965 578899999876
No 33
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=24.63 E-value=80 Score=28.51 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=44.4
Q ss_pred CChHHHHHHHHHhhhcCcceEEEecCCCC---CCCHHHHHHHHHHHHHHHHHhcCCC
Q 011271 169 WTKEETDQLFELCERFDLRFIVIADRFPS---SRTVEELKDRYYGVSRAILIARAPS 222 (489)
Q Consensus 169 WTkeETDyLfdLc~~fDLRfiVI~DRy~~---~Rt~EdLK~RYY~V~~kl~~~r~~~ 222 (489)
|++.--|+|..+|+..++++++|.+-++. ..-|+.|-.=.-+++++|+..|.+.
T Consensus 74 l~R~~~d~~~~~l~~~gv~l~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~r~~~ 130 (134)
T cd03769 74 LARFGFELLEELFKAYGVEIVVINQEENEELEQELVEDLIEIITSFSARLYGKRSHK 130 (134)
T ss_pred HHHhhHHHHHHHHHHCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 66767778888999999999999987753 3677888888888999998888764
No 34
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=23.95 E-value=91 Score=29.76 Aligned_cols=54 Identities=31% Similarity=0.497 Sum_probs=32.5
Q ss_pred cceEeehHH-HHHHHHhhcccchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011271 341 LRVYLRTYA-LEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQY 412 (489)
Q Consensus 341 ~GVyLRS~~-l~~~~~a~~~~~g~k~~KrIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~Iv~LleLkK~l~k 412 (489)
-|+.||-+. +++ +..-+-++|..+|+|-|+. |.+| ++|..-|--...|+++++.
T Consensus 50 IG~~LRD~~gip~--------Vk~vtG~ki~~iLk~~gl~--p~iP--------EDL~~L~~ri~~L~~HL~~ 104 (151)
T PRK08561 50 IGIILRDQYGIPD--------VKLITGKKITEILEENGLA--PEIP--------EDLRNLIKKAVNLRKHLEE 104 (151)
T ss_pred hhhhHhhccCCCc--------eeeeccchHHHHHHHcCCC--CCCc--------HHHHHHHHHHHHHHHHHHh
Confidence 499999875 221 1112336899999999994 6677 3344444444445555543
No 35
>PHA02550 32 single-stranded DNA binding protein; Provisional
Probab=23.67 E-value=53 Score=34.41 Aligned_cols=62 Identities=24% Similarity=0.380 Sum_probs=45.6
Q ss_pred CCcccccccccccccCHHHHHhhhcCCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 011271 141 YSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARA 220 (489)
Q Consensus 141 y~FAKfN~kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~kl~~~r~ 220 (489)
|.=.+|-....|+.+.||+|+..|- -+++||.=++-.|-| .|.|+|+.||=.|...-+..++
T Consensus 188 YD~s~f~~~s~l~~i~De~~~~~iw---------------e~~hdL~e~~a~~~F---Ksye~L~~rf~kVmG~s~~~~a 249 (304)
T PHA02550 188 YDDSKFAAPSPLPNIDDEAFQKEIW---------------EQMHDLSEFVAPDKF---KSYEELETKFNKVMGTSAVGGA 249 (304)
T ss_pred cccccccccccCCCCCcHHHHHHHH---------------HhcccHHHHhCHHhc---CCHHHHHHHHHHHhcccccccc
Confidence 4445666667788889999987662 267888888887777 5899999999998864443333
No 36
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=23.39 E-value=40 Score=38.97 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=41.7
Q ss_pred CCCCChHHHHHHHHHhhhcCcceEEEecCC---CCCCCHHHHHHHHHHHH
Q 011271 166 DPMWTKEETDQLFELCERFDLRFIVIADRF---PSSRTVEELKDRYYGVS 212 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fDLRfiVI~DRy---~~~Rt~EdLK~RYY~V~ 212 (489)
...||.||-+-|..|+.+--.-=+|=|||. -..||--.|--|||.+-
T Consensus 305 ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~L 354 (939)
T KOG0049|consen 305 EKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTL 354 (939)
T ss_pred hhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheecc
Confidence 458999999999999999999999999985 46899999999999764
No 37
>PRK08068 transaminase; Reviewed
Probab=23.09 E-value=73 Score=32.99 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=23.5
Q ss_pred CCChHHHHHHHHHhhhcCcceEEEecCC
Q 011271 168 MWTKEETDQLFELCERFDLRFIVIADRF 195 (489)
Q Consensus 168 ~WTkeETDyLfdLc~~fDLRfiVI~DRy 195 (489)
.|+.+|-..|.++|+++|+ |||+=|-|
T Consensus 183 ~~s~~~~~~l~~la~~~~~-~ii~Deay 209 (389)
T PRK08068 183 VATKAFFEETVAFAKKHNI-GVVHDFAY 209 (389)
T ss_pred cCCHHHHHHHHHHHHHcCe-EEEEehhh
Confidence 5999999999999999998 66666666
No 38
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.22 E-value=69 Score=33.53 Aligned_cols=39 Identities=15% Similarity=0.383 Sum_probs=29.8
Q ss_pred cccccccCHHHHHhhhcCCCCChHHHHHHHHHhh-----------hcCcceEEEecC
Q 011271 149 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE-----------RFDLRFIVIADR 194 (489)
Q Consensus 149 kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~-----------~fDLRfiVI~DR 194 (489)
.|+||-||-|-+.+ +++|.++||+|++ +.+.|.-||-|+
T Consensus 114 ~lTvYaFStEN~kR-------~~~EV~~Lm~L~~~~l~~~~~~~~~~~irir~iG~~ 163 (296)
T PRK14827 114 WLSLYAFSTENWKR-------SPEEVRFLMGFNRDVVRRRRDNLNKMGVRIRWVGSR 163 (296)
T ss_pred EEEEeeecchhhcC-------CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEech
Confidence 46777887776652 6789999999965 457888888876
No 39
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.00 E-value=72 Score=32.30 Aligned_cols=79 Identities=14% Similarity=0.218 Sum_probs=46.3
Q ss_pred cccccccCHHHHHhhhcCCCCChHHHHHHHHHhh-----------hcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 011271 149 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCE-----------RFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILI 217 (489)
Q Consensus 149 kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~-----------~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~kl~~ 217 (489)
.|+|+.||-|-+.+ +++|.+.||+|++ +++.|.-||-|+ .+--++|++.. .++.+
T Consensus 61 ~vTvYaFS~eN~kR-------~~~Ev~~lm~L~~~~l~~~~~~~~~~~iri~~iG~~---~~Lp~~~~~~i----~~~e~ 126 (243)
T PRK14829 61 YLSLYTFSTENWKR-------SPDEVRFLMGFSRDVIHRRREQMDEWGVRVRWSGRR---PRLWKSVIDEL----EAAEE 126 (243)
T ss_pred EEEEeeecchhhCC-------CHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEEech---hhCCHHHHHHH----HHHHH
Confidence 36677777766642 5789999999965 568889999876 33335554432 22222
Q ss_pred hcCCCCCCCCCCCccCCCCChHHHHHH
Q 011271 218 ARAPSPTDVSGHPLVKDPYNVSQEVER 244 (489)
Q Consensus 218 ~r~~~~~e~~~~~l~~~~fd~~~E~~R 244 (489)
.-. ..+.. .-.+-.+|+-..|..+
T Consensus 127 ~T~-~~~~~--~Lnia~~Y~gr~EI~~ 150 (243)
T PRK14829 127 LTK-NNTTM--DLVFCVNYGGRAEIAD 150 (243)
T ss_pred Hhc-cCCce--EEEEEecCCCHHHHHH
Confidence 211 11111 1112368999888744
No 40
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=21.60 E-value=86 Score=28.28 Aligned_cols=29 Identities=38% Similarity=0.650 Sum_probs=22.1
Q ss_pred HHHhhhcCcc---eEEE---e--c-----CCCCC-CCHHHHHH
Q 011271 178 FELCERFDLR---FIVI---A--D-----RFPSS-RTVEELKD 206 (489)
Q Consensus 178 fdLc~~fDLR---fiVI---~--D-----Ry~~~-Rt~EdLK~ 206 (489)
-+||.+|+++ |+.| . + .|... ||.++|..
T Consensus 68 ~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~ 110 (116)
T cd03007 68 MELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQR 110 (116)
T ss_pred HHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHH
Confidence 4899999997 7755 2 2 47775 99999974
No 41
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=21.26 E-value=76 Score=33.65 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=46.2
Q ss_pred cccccccCHHHHHhhhcCCCCChHHHHHHHHHh--------------hhcCcceEEEecCCCCCCCHHHHHHHHHHHHHH
Q 011271 149 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELC--------------ERFDLRFIVIADRFPSSRTVEELKDRYYGVSRA 214 (489)
Q Consensus 149 kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc--------------~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~k 214 (489)
.|+|+.||-|-|.+ +.+|.++||+|. .+++.|.-||-|+= -|=+..=.+...
T Consensus 66 ~lTlYAFStENwkR-------p~~EV~~Lm~L~~~~l~~~~~~~~~l~~~~irirviGd~~-------~Lp~~l~~~i~~ 131 (322)
T PTZ00349 66 ILSVFSFSLLNYNR-------SPEEIHFLFYLNLLILINEDFFFKFIKDNKIKIKIIGNLS-------YINDAYRKIIHD 131 (322)
T ss_pred EEEEEEeehhhhCC-------CHHHHHHHHHHHHHHHHHhhhhHHHHHHCCCEEEEEeChh-------hCCHHHHHHHHH
Confidence 46788888887753 689999999876 25678888887762 122222233333
Q ss_pred HHHhcCCCCCCCCCCCccCCCCChHHHHHH
Q 011271 215 ILIARAPSPTDVSGHPLVKDPYNVSQEVER 244 (489)
Q Consensus 215 l~~~r~~~~~e~~~~~l~~~~fd~~~E~~R 244 (489)
+.+.=..+ +.+ +--+-++|.-..|.-+
T Consensus 132 ~e~~T~~n-~~~--~Lnia~~YggR~EI~~ 158 (322)
T PTZ00349 132 IEEKTENF-DNI--LLNIFFSYTSRNEMSL 158 (322)
T ss_pred HHHHhCCC-CCc--EEEEEecCCCHHHHHH
Confidence 33322211 111 1113378988888764
No 42
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=21.25 E-value=77 Score=31.64 Aligned_cols=39 Identities=31% Similarity=0.543 Sum_probs=30.7
Q ss_pred cccccccCHHHHHhhhcCCCCChHHHHHHHHHhhhc-----------CcceEEEecC
Q 011271 149 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 194 (489)
Q Consensus 149 kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~~f-----------DLRfiVI~DR 194 (489)
.++|+-||-|-+.+ +.+|.+.||+|++.| +.|+-||-|+
T Consensus 47 ~lTvyaFS~eN~~R-------~~~EV~~Lm~l~~~~l~~~~~~~~~~~i~vr~iGd~ 96 (221)
T cd00475 47 EVTLYAFSTENWKR-------PKEEVDFLMELFRDVLRRILKELEKLGVRIRIIGDL 96 (221)
T ss_pred EEEEEeechhhhCc-------CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeCh
Confidence 46778888876642 578999999998866 7888888876
No 43
>PF07357 DRAT: Dinitrogenase reductase ADP-ribosyltransferase (DRAT); InterPro: IPR009953 This family consists of several bacterial dinitrogenase reductase ADP-ribosyltransferase (DRAT) proteins. Members of this family seem to be specific to Rhodospirillum, Rhodobacter and Azospirillum species. Dinitrogenase reductase ADP-ribosyl transferase (DRAT) carries out the transfer of the ADP-ribose from NAD to the Arg-101 residue of one subunit of the dinitrogenase reductase homodimer, resulting in inactivation of that enzyme. Dinitrogenase reductase-activating glycohydrolase (DRAG) removes the ADP-ribose group attached to dinitrogenase reductase, thus restoring nitrogenase activity. The DRAT-DRAG system negatively regulates nitrogenase activity in response to exogenous NH4+ or energy limitation in the form of a shift to darkness or to anaerobic conditions [].
Probab=21.08 E-value=55 Score=33.77 Aligned_cols=38 Identities=18% Similarity=0.560 Sum_probs=25.8
Q ss_pred ccccccccccccCHHHHHhhhcCC-------CCChHHHHHHHHHhh
Q 011271 144 AKYNKSVDVVKYTDEEYEKYLTDP-------MWTKEETDQLFELCE 182 (489)
Q Consensus 144 AKfN~kv~vp~YtdeEY~~~L~d~-------~WTkeETDyLfdLc~ 182 (489)
..|-+.+ |..+..+.|..|+.+- +=-...-|.|++.|+
T Consensus 116 PtfHk~~-i~~~~s~a~~~Y~~ekm~~~~~tNaI~~QLDLLYeycQ 160 (262)
T PF07357_consen 116 PTFHKEP-IRRFHSEAWARYVEEKMSGRFHTNAIESQLDLLYEYCQ 160 (262)
T ss_pred cccccCc-CCCCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Confidence 3455544 8899999999999732 223345677777775
No 44
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.06 E-value=79 Score=32.30 Aligned_cols=39 Identities=26% Similarity=0.511 Sum_probs=30.1
Q ss_pred cccccccCHHHHHhhhcCCCCChHHHHHHHHHhhhc-----------CcceEEEecC
Q 011271 149 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 194 (489)
Q Consensus 149 kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~~f-----------DLRfiVI~DR 194 (489)
.|+|+-||-|-+. =+++|.++||+|.++| +.|+-||-|+
T Consensus 69 ~lTvYaFS~EN~~-------R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~ 118 (250)
T PRK14840 69 VLTLFAFSTENFS-------RSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCIGDL 118 (250)
T ss_pred EEEEEEeehhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh
Confidence 4677888877665 2679999999887764 7888888765
No 45
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.05 E-value=1.9e+02 Score=27.37 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCc---ccCCCCCccccccc--CCCCCcccccCcCCCccc
Q 011271 391 AEHLELRKEILTLLNLQKQLQYKEAEGSSYRDGS---YIDMPGTPKRSQRA--GDQDRTFVPESINFGGER 456 (489)
Q Consensus 391 ~~f~eLR~~Iv~LleLkK~l~k~E~El~~lr~~~---~~~~P~tp~~~~r~--~~~~~~~~~~~~~~~~~r 456 (489)
..-+.|+.+|..|-.+...++.+..-|+.+.... +.+.|..+...-.. .|.|...|+-+.|+..|+
T Consensus 20 ~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~ 90 (145)
T COG1730 20 SQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEK 90 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeee
Confidence 3346788888888888888888888888888765 89999998877662 355788999998887665
Done!