Query 011271
Match_columns 489
No_of_seqs 156 out of 193
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4iej_A DNA methyltransferase 1 100.0 1.8E-42 6.3E-47 293.7 5.2 86 138-223 2-91 (93)
2 3hm5_A DNA methyltransferase 1 100.0 5E-39 1.7E-43 273.2 5.0 84 138-221 2-89 (93)
3 1x58_A Hypothetical protein 49 97.4 3.9E-05 1.3E-09 60.8 1.8 48 167-214 9-58 (62)
4 3osg_A MYB21; transcription-DN 97.2 0.0002 7E-09 62.8 3.9 55 160-215 52-110 (126)
5 2cu7_A KIAA1915 protein; nucle 97.1 0.00016 5.6E-09 57.7 2.4 54 164-218 7-60 (72)
6 1guu_A C-MYB, MYB proto-oncoge 96.8 0.00063 2.1E-08 50.7 2.6 47 165-212 2-49 (52)
7 2k9n_A MYB24; R2R3 domain, DNA 96.7 0.00068 2.3E-08 57.7 2.8 58 160-218 43-104 (107)
8 3sjm_A Telomeric repeat-bindin 96.7 0.00059 2E-08 53.8 2.1 47 167-213 12-60 (64)
9 2din_A Cell division cycle 5-l 96.7 0.00084 2.9E-08 52.6 2.9 54 165-220 8-61 (66)
10 1gv2_A C-MYB, MYB proto-oncoge 96.7 0.00074 2.5E-08 57.0 2.8 54 160-214 46-103 (105)
11 1w0t_A Telomeric repeat bindin 96.6 0.0007 2.4E-08 50.9 1.7 47 167-213 3-51 (53)
12 2llk_A Cyclin-D-binding MYB-li 96.4 0.00061 2.1E-08 55.3 0.2 45 165-211 22-66 (73)
13 2ltp_A Nuclear receptor corepr 95.4 0.00058 2E-08 57.0 0.0 51 164-215 14-64 (89)
14 1x41_A Transcriptional adaptor 96.3 0.0012 4.2E-08 50.9 1.5 47 164-211 6-53 (60)
15 2d9a_A B-MYB, MYB-related prot 96.3 0.0014 4.8E-08 50.3 1.7 47 164-211 6-53 (60)
16 1gvd_A MYB proto-oncogene prot 96.2 0.0019 6.3E-08 48.2 2.2 47 164-211 1-48 (52)
17 1ity_A TRF1; helix-turn-helix, 96.2 0.0018 6.1E-08 51.2 2.2 48 166-213 10-59 (69)
18 2elk_A SPCC24B10.08C protein; 96.2 0.0017 6E-08 49.8 1.8 47 165-211 8-55 (58)
19 2yum_A ZZZ3 protein, zinc fing 96.2 0.00098 3.3E-08 53.4 0.4 54 165-219 7-66 (75)
20 2aje_A Telomere repeat-binding 96.1 0.0024 8.3E-08 55.3 2.7 49 166-214 13-65 (105)
21 2ckx_A NGTRF1, telomere bindin 96.1 0.0023 7.9E-08 53.1 2.3 48 168-215 2-53 (83)
22 3zqc_A MYB3; transcription-DNA 96.1 0.0026 8.8E-08 56.0 2.6 56 160-216 44-103 (131)
23 2cqr_A RSGI RUH-043, DNAJ homo 96.0 0.003 1E-07 51.2 2.6 48 165-213 17-68 (73)
24 1h8a_C AMV V-MYB, MYB transfor 96.0 0.0016 5.6E-08 56.9 1.0 54 160-214 69-126 (128)
25 2juh_A Telomere binding protei 95.5 0.0034 1.2E-07 55.6 1.1 50 166-215 17-70 (121)
26 2cjj_A Radialis; plant develop 95.5 0.0067 2.3E-07 51.3 2.8 52 166-218 8-63 (93)
27 2dim_A Cell division cycle 5-l 95.5 0.005 1.7E-07 48.6 1.8 47 164-211 7-54 (70)
28 2yus_A SWI/SNF-related matrix- 95.4 0.0039 1.3E-07 51.1 1.1 45 165-210 17-61 (79)
29 2roh_A RTBP1, telomere binding 95.4 0.0037 1.3E-07 55.5 1.0 50 166-215 31-84 (122)
30 1h89_C C-MYB, MYB proto-oncoge 95.2 0.0049 1.7E-07 55.7 1.0 55 159-214 99-157 (159)
31 1wgx_A KIAA1903 protein; MYB D 94.7 0.01 3.6E-07 48.3 1.6 45 166-211 8-56 (73)
32 2eqr_A N-COR1, N-COR, nuclear 94.4 0.012 4.2E-07 45.6 1.4 43 167-210 13-55 (61)
33 2cqq_A RSGI RUH-037, DNAJ homo 93.5 0.019 6.5E-07 46.3 0.9 44 166-211 8-55 (72)
34 3osg_A MYB21; transcription-DN 93.5 0.03 1E-06 48.9 2.2 47 165-212 10-56 (126)
35 1gv2_A C-MYB, MYB proto-oncoge 92.7 0.046 1.6E-06 45.9 2.2 47 164-211 2-49 (105)
36 2k9n_A MYB24; R2R3 domain, DNA 91.8 0.055 1.9E-06 45.8 1.6 43 168-211 3-46 (107)
37 1h8a_C AMV V-MYB, MYB transfor 91.6 0.063 2.1E-06 46.7 1.8 45 166-211 27-72 (128)
38 1h89_C C-MYB, MYB proto-oncoge 90.2 0.15 5E-06 45.9 2.9 51 160-211 48-103 (159)
39 3zqc_A MYB3; transcription-DNA 89.5 0.18 6.1E-06 44.1 2.8 45 167-212 3-48 (131)
40 4eef_G F-HB80.4, designed hema 89.4 0.086 3E-06 43.1 0.6 42 166-208 20-65 (74)
41 1ug2_A 2610100B20RIK gene prod 88.4 0.25 8.6E-06 41.9 2.8 47 168-215 35-84 (95)
42 2iw5_B Protein corest, REST co 79.9 0.53 1.8E-05 45.9 1.2 44 166-210 133-176 (235)
43 2yqk_A Arginine-glutamic acid 79.6 0.84 2.9E-05 35.4 2.1 46 164-209 7-52 (63)
44 2lr8_A CAsp8-associated protei 79.6 0.44 1.5E-05 38.5 0.0 43 168-212 16-61 (70)
45 1ign_A Protein (RAP1); RAP1,ye 65.9 2.9 9.9E-05 41.0 2.6 47 166-213 8-60 (246)
46 2crg_A Metastasis associated p 64.9 3.3 0.00011 32.8 2.3 47 167-214 9-55 (70)
47 2ebi_A DNA binding protein GT- 56.6 3 0.0001 33.7 0.7 55 166-220 4-71 (86)
48 2gm2_A Conserved hypothetical 51.5 7.5 0.00026 34.3 2.5 32 367-399 81-112 (132)
49 4b4c_A Chromodomain-helicase-D 51.1 8.9 0.0003 35.4 3.0 44 167-211 8-55 (211)
50 2fvt_A Conserved hypothetical 49.6 7.5 0.00026 34.5 2.2 32 367-399 84-115 (135)
51 2ab1_A Hypothetical protein; H 48.0 7.7 0.00026 33.8 2.0 32 367-399 79-110 (122)
52 2fi9_A Outer membrane protein; 46.7 8.2 0.00028 33.8 2.0 32 367-399 85-116 (128)
53 3trt_A Vimentin; cytoskeleton, 43.6 37 0.0013 26.7 5.2 36 386-421 41-76 (77)
54 4a69_C Nuclear receptor corepr 39.2 15 0.00053 30.5 2.4 52 158-210 35-86 (94)
55 4d9a_A 2-pyrone-4,6-dicarbaxyl 36.8 51 0.0018 31.9 6.1 64 139-204 39-112 (303)
56 3u5c_N S27A, YS15, 40S ribosom 36.6 17 0.00058 33.3 2.4 59 341-417 50-109 (151)
57 4dzn_A Coiled-coil peptide CC- 32.1 29 0.00098 23.6 2.3 28 395-425 6-33 (33)
58 2xzm_O RPS13E; ribosome, trans 30.5 22 0.00075 32.6 2.0 59 341-417 52-111 (153)
59 3sgv_B Undecaprenyl pyrophosph 28.0 22 0.00074 35.0 1.7 39 149-194 64-113 (253)
60 1ofc_X ISWI protein; nuclear p 26.4 43 0.0015 33.7 3.5 59 153-213 92-156 (304)
61 3cpk_A Uncharacterized protein 24.9 27 0.00093 31.8 1.6 32 367-399 105-136 (150)
62 3ku7_A MINE, cell division top 24.4 94 0.0032 25.4 4.6 32 186-217 23-54 (80)
63 2kxo_A Cell division topologic 22.5 71 0.0024 26.8 3.7 33 186-218 22-57 (95)
64 2es9_A Putative cytoplasmic pr 22.5 74 0.0025 27.2 3.7 25 357-381 29-53 (115)
65 3ugs_B Undecaprenyl pyrophosph 22.2 21 0.00073 34.4 0.4 38 150-194 54-102 (225)
66 2xag_B REST corepressor 1; ami 21.2 30 0.001 37.0 1.3 43 166-209 380-422 (482)
67 2vg0_A Short-chain Z-isoprenyl 21.1 27 0.00093 33.5 0.9 40 149-195 50-98 (227)
No 1
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=100.00 E-value=1.8e-42 Score=293.68 Aligned_cols=86 Identities=50% Similarity=0.914 Sum_probs=69.7
Q ss_pred CCCCCcccccccccccccCHHHHHhhhcCCCCChHHHHHHHHHhhhcCcceEEEecCCC----CCCCHHHHHHHHHHHHH
Q 011271 138 TGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFP----SSRTVEELKDRYYGVSR 213 (489)
Q Consensus 138 ~~~y~FAKfN~kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~----~~Rt~EdLK~RYY~V~~ 213 (489)
+++|||||||++|+||+||+|||++||++++||+|||||||+||++|||||+||+|||. ..|||||||+|||+||+
T Consensus 2 ~~~y~FakfN~~v~ip~yt~eEY~~~L~~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 2 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp ------------CCCCCCCHHHHHHHTCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCccccCCcCCCcccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999997 37999999999999999
Q ss_pred HHHHhcCCCC
Q 011271 214 AILIARAPSP 223 (489)
Q Consensus 214 kl~~~r~~~~ 223 (489)
+|+++|+|+.
T Consensus 82 ~l~~~r~~~~ 91 (93)
T 4iej_A 82 KLANVRAVPG 91 (93)
T ss_dssp HHHHHTC---
T ss_pred HHHHhhCCCC
Confidence 9999998764
No 2
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=100.00 E-value=5e-39 Score=273.22 Aligned_cols=84 Identities=51% Similarity=0.940 Sum_probs=68.3
Q ss_pred CCCCCcccccccccccccCHHHHHhhhcCCCCChHHHHHHHHHhhhcCcceEEEecCCC----CCCCHHHHHHHHHHHHH
Q 011271 138 TGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFP----SSRTVEELKDRYYGVSR 213 (489)
Q Consensus 138 ~~~y~FAKfN~kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~----~~Rt~EdLK~RYY~V~~ 213 (489)
+++|+|||||++|+||+||+|||+.||++++||+|||||||+||++|||||+||+|||+ ..|||||||+|||+||+
T Consensus 2 ~~~y~fakfN~~~~i~~yt~eeY~~~L~~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 2 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp -------------CCCCCCHHHHHHHTCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCchhccccCCCCccCHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999996 47999999999999999
Q ss_pred HHHHhcCC
Q 011271 214 AILIARAP 221 (489)
Q Consensus 214 kl~~~r~~ 221 (489)
+|+.+|+.
T Consensus 82 ~l~~~r~~ 89 (93)
T 3hm5_A 82 KLANVRAV 89 (93)
T ss_dssp HHHHHTC-
T ss_pred HHHHhcCC
Confidence 99999963
No 3
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.44 E-value=3.9e-05 Score=60.82 Aligned_cols=48 Identities=25% Similarity=0.349 Sum_probs=43.5
Q ss_pred CCCChHHHHHHHHHhhhcCcceEEEecCCC--CCCCHHHHHHHHHHHHHH
Q 011271 167 PMWTKEETDQLFELCERFDLRFIVIADRFP--SSRTVEELKDRYYGVSRA 214 (489)
Q Consensus 167 ~~WTkeETDyLfdLc~~fDLRfiVI~DRy~--~~Rt~EdLK~RYY~V~~k 214 (489)
..||.||+.+|++++++|+-.|--|..-|+ ..||-=|||+||+.+.++
T Consensus 9 ~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 479999999999999999999999998665 689999999999988763
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.21 E-value=0.0002 Score=62.77 Aligned_cols=55 Identities=29% Similarity=0.587 Sum_probs=48.2
Q ss_pred HHhhhc----CCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 011271 160 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAI 215 (489)
Q Consensus 160 Y~~~L~----d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~kl 215 (489)
|..+|. ...||.||...|++++.+|+-+|-.|+..++ .||-.++|.|||.+.+++
T Consensus 52 w~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~-gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 52 WKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFP-GRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTST-TCCHHHHHHHHHHHHHHT
T ss_pred HhhhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 555553 4579999999999999999999999998765 799999999999999986
No 5
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.14 E-value=0.00016 Score=57.73 Aligned_cols=54 Identities=22% Similarity=0.195 Sum_probs=47.7
Q ss_pred hcCCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 011271 164 LTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 218 (489)
Q Consensus 164 L~d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~kl~~~ 218 (489)
+....||.||-..|+++++.|+-+|-.|+..++ .||-.++|.||+...++++..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 345689999999999999999999999998664 599999999999998887654
No 6
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=96.77 E-value=0.00063 Score=50.71 Aligned_cols=47 Identities=32% Similarity=0.490 Sum_probs=42.0
Q ss_pred cCCCCChHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHHH
Q 011271 165 TDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGVS 212 (489)
Q Consensus 165 ~d~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~~~Rt~EdLK~RYY~V~ 212 (489)
+...||.||-..|++++..|+- +|-.|+..++ .||-.+.++||+.+-
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 4568999999999999999998 9999998885 699999999998763
No 7
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.72 E-value=0.00068 Score=57.74 Aligned_cols=58 Identities=16% Similarity=0.347 Sum_probs=49.9
Q ss_pred HHhhhc----CCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 011271 160 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 218 (489)
Q Consensus 160 Y~~~L~----d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~kl~~~ 218 (489)
|..||. ...||.||-..|++++..|+-+|..|+..+ +.||-.++|.||+.+.+++...
T Consensus 43 w~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l-~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 43 WNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISKFL-KNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHH-SSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHHHC-CCCCHHHHHHHHHHHHhhHHHh
Confidence 555553 468999999999999999999999999766 5799999999999999987644
No 8
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=96.71 E-value=0.00059 Score=53.80 Aligned_cols=47 Identities=26% Similarity=0.505 Sum_probs=42.1
Q ss_pred CCCChHHHHHHHHHhhhcCc-ceEEEecCCC-CCCCHHHHHHHHHHHHH
Q 011271 167 PMWTKEETDQLFELCERFDL-RFIVIADRFP-SSRTVEELKDRYYGVSR 213 (489)
Q Consensus 167 ~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~-~~Rt~EdLK~RYY~V~~ 213 (489)
..||.||.+.|.+++++|+- .|-.|+.-|+ ..||--++++||..+.+
T Consensus 12 ~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 46999999999999999995 8999998886 57999999999987654
No 9
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.00084 Score=52.56 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=47.6
Q ss_pred cCCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 011271 165 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARA 220 (489)
Q Consensus 165 ~d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~kl~~~r~ 220 (489)
....||.||-..|+++.+.|+-+|-.|+. +.. ||-.+.++||+...+..+....
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCC
Confidence 34679999999999999999999999999 764 9999999999999888765543
No 10
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.69 E-value=0.00074 Score=56.97 Aligned_cols=54 Identities=26% Similarity=0.506 Sum_probs=45.9
Q ss_pred HHhhhc----CCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHH
Q 011271 160 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRA 214 (489)
Q Consensus 160 Y~~~L~----d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~k 214 (489)
|..+|. ...||.||-..|++++..|+-+|-.|+..++ .||-.++|.||+.+.++
T Consensus 46 w~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~-gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 46 WHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLP-GRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp HHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCT-TCCHHHHHHHHHHHTC-
T ss_pred HHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 555553 4689999999999999999999999997764 69999999999987654
No 11
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=96.58 E-value=0.0007 Score=50.88 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=42.6
Q ss_pred CCCChHHHHHHHHHhhhcCc-ceEEEecCCCC-CCCHHHHHHHHHHHHH
Q 011271 167 PMWTKEETDQLFELCERFDL-RFIVIADRFPS-SRTVEELKDRYYGVSR 213 (489)
Q Consensus 167 ~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~~-~Rt~EdLK~RYY~V~~ 213 (489)
..||.||...|++++..|+. .|-.|+..++. .||--++++||..+.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 46999999999999999995 99999999875 5999999999998764
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=96.36 E-value=0.00061 Score=55.34 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=42.0
Q ss_pred cCCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHH
Q 011271 165 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGV 211 (489)
Q Consensus 165 ~d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V 211 (489)
.-..||.||-..|++|..+|+-+|-.|+..+ .||--++|.||+.+
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l--gRt~~q~knRw~~L 66 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGNDWATIGAAL--GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH--TSCHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh--CCCHHHHHHHHHHH
Confidence 3468999999999999999999999999999 89999999999975
No 13
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.36 E-value=0.00058 Score=56.97 Aligned_cols=51 Identities=24% Similarity=0.235 Sum_probs=45.5
Q ss_pred hcCCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 011271 164 LTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAI 215 (489)
Q Consensus 164 L~d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~kl 215 (489)
+....||.||-..|+++...|+-+|-.|+..++ .||-.++|.|||...+++
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~-gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVG-SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 445689999999999999999999999998765 799999999999887765
No 14
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.27 E-value=0.0012 Score=50.88 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=41.4
Q ss_pred hcCCCCChHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 011271 164 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 211 (489)
Q Consensus 164 L~d~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~~~Rt~EdLK~RYY~V 211 (489)
|....||.||-..|+++++.|+. +|-.|+..++ .||-.+.++||..+
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 53 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34568999999999999999995 9999998885 49999999999864
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=96.26 E-value=0.0014 Score=50.26 Aligned_cols=47 Identities=32% Similarity=0.535 Sum_probs=41.8
Q ss_pred hcCCCCChHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 011271 164 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 211 (489)
Q Consensus 164 L~d~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~~~Rt~EdLK~RYY~V 211 (489)
+....||.||...|++++..|+. +|-.|+..++ .||--+.++||+.+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHH
Confidence 34568999999999999999995 9999999885 59999999999864
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=96.23 E-value=0.0019 Score=48.20 Aligned_cols=47 Identities=30% Similarity=0.559 Sum_probs=41.3
Q ss_pred hcCCCCChHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 011271 164 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 211 (489)
Q Consensus 164 L~d~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~~~Rt~EdLK~RYY~V 211 (489)
|....||.||...|++++..|+- +|-.|+..++ .||-.+.++||+.+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNH 48 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34568999999999999999997 6999998874 79999999999864
No 17
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=96.22 E-value=0.0018 Score=51.17 Aligned_cols=48 Identities=23% Similarity=0.318 Sum_probs=43.2
Q ss_pred CCCCChHHHHHHHHHhhhcCc-ceEEEecCCCC-CCCHHHHHHHHHHHHH
Q 011271 166 DPMWTKEETDQLFELCERFDL-RFIVIADRFPS-SRTVEELKDRYYGVSR 213 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~~-~Rt~EdLK~RYY~V~~ 213 (489)
-..||.||...|+++++.|+. .|-.|+..++. .||--++++||..+.+
T Consensus 10 r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 10 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 357999999999999999995 99999999874 7999999999998765
No 18
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=96.16 E-value=0.0017 Score=49.83 Aligned_cols=47 Identities=32% Similarity=0.484 Sum_probs=42.3
Q ss_pred cCCCCChHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHH
Q 011271 165 TDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGV 211 (489)
Q Consensus 165 ~d~~WTkeETDyLfdLc~~fD-LRfiVI~DRy~~~Rt~EdLK~RYY~V 211 (489)
....||.||-..|+++++.|+ -+|-.|+...+..||-.+.++||..+
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 356799999999999999999 69999998887789999999999764
No 19
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.16 E-value=0.00098 Score=53.36 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=46.1
Q ss_pred cCCCCChHHHHHHHHHhhhcC------cceEEEecCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 011271 165 TDPMWTKEETDQLFELCERFD------LRFIVIADRFPSSRTVEELKDRYYGVSRAILIAR 219 (489)
Q Consensus 165 ~d~~WTkeETDyLfdLc~~fD------LRfiVI~DRy~~~Rt~EdLK~RYY~V~~kl~~~r 219 (489)
....||.||-..|.+++..|+ -+|-.|+..++ .||..+.++||.....+++...
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcC
Confidence 456899999999999999999 79999998876 5999999999987777665443
No 20
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.13 E-value=0.0024 Score=55.26 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=44.0
Q ss_pred CCCCChHHHHHHHHHhhhcCc-ceEEEecCCC---CCCCHHHHHHHHHHHHHH
Q 011271 166 DPMWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRA 214 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~---~~Rt~EdLK~RYY~V~~k 214 (489)
-..||.||++.|.+.+++|+- +|--|...|. ..||--|||+||..+.+.
T Consensus 13 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 13 RRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 457999999999999999998 9999998774 689999999999887764
No 21
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.10 E-value=0.0023 Score=53.10 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=43.1
Q ss_pred CCChHHHHHHHHHhhhcCc-ceEEEecCCC---CCCCHHHHHHHHHHHHHHH
Q 011271 168 MWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRAI 215 (489)
Q Consensus 168 ~WTkeETDyLfdLc~~fDL-RfiVI~DRy~---~~Rt~EdLK~RYY~V~~kl 215 (489)
.||.||.+.|.+++++|+. +|-.|...|. ..||--|||+||....++-
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 5999999999999999999 9999998632 5899999999999988754
No 22
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.06 E-value=0.0026 Score=56.01 Aligned_cols=56 Identities=25% Similarity=0.441 Sum_probs=47.6
Q ss_pred HHhhhc----CCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHH
Q 011271 160 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAIL 216 (489)
Q Consensus 160 Y~~~L~----d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~kl~ 216 (489)
|..+|. ...||.||-..|++++..|+-+|-.|+..++ .||--++|.|||+..++-+
T Consensus 44 w~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 44 WFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIP-GRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp HHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTST-TCCHHHHHHHHHHTTGGGC
T ss_pred HhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcC-CCCHHHHHHHHHHHHHHHh
Confidence 556664 4579999999999999999999999997665 7999999999998776543
No 23
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.02 E-value=0.003 Score=51.23 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=42.6
Q ss_pred cCCCCChHHHHHHHHHhhhcC----cceEEEecCCCCCCCHHHHHHHHHHHHH
Q 011271 165 TDPMWTKEETDQLFELCERFD----LRFIVIADRFPSSRTVEELKDRYYGVSR 213 (489)
Q Consensus 165 ~d~~WTkeETDyLfdLc~~fD----LRfiVI~DRy~~~Rt~EdLK~RYY~V~~ 213 (489)
....||.||...|..++..|+ -||-.|+...+ .||.++.+.||..+..
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 346799999999999999999 69999998887 5999999999987653
No 24
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.99 E-value=0.0016 Score=56.89 Aligned_cols=54 Identities=26% Similarity=0.500 Sum_probs=46.1
Q ss_pred HHhhhc----CCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHH
Q 011271 160 YEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRA 214 (489)
Q Consensus 160 Y~~~L~----d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~k 214 (489)
|..+|. ...||.||-..|++++..|+-+|-.|+..++ .||-.++|.||+.+.++
T Consensus 69 w~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~-gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 69 WHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLP-GRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp HHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGST-TCCHHHHHHHHHTTTTC
T ss_pred HHHhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHCC-CCCHHHHHHHHHHHHhc
Confidence 555553 4589999999999999999999999997764 79999999999976543
No 25
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=95.50 E-value=0.0034 Score=55.63 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=44.8
Q ss_pred CCCCChHHHHHHHHHhhhcCc-ceEEEecCCC---CCCCHHHHHHHHHHHHHHH
Q 011271 166 DPMWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRAI 215 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~---~~Rt~EdLK~RYY~V~~kl 215 (489)
-..||.||.+.|.+++++|+- +|-.|...|. ..||--|||+||....+.-
T Consensus 17 r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 17 RRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp SCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 347999999999999999999 9999998864 5899999999999988763
No 26
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=95.50 E-value=0.0067 Score=51.33 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=45.4
Q ss_pred CCCCChHHHHHHHHHhhhcC----cceEEEecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 011271 166 DPMWTKEETDQLFELCERFD----LRFIVIADRFPSSRTVEELKDRYYGVSRAILIA 218 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fD----LRfiVI~DRy~~~Rt~EdLK~RYY~V~~kl~~~ 218 (489)
...||.||-..|..++..|+ -||-.|+...+. ||.++.+.||-.....+...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~~dv~~i 63 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILVEDIKYI 63 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999996 699999998874 99999999999988776443
No 27
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.46 E-value=0.005 Score=48.61 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=42.5
Q ss_pred hcCCCCChHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHH
Q 011271 164 LTDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGV 211 (489)
Q Consensus 164 L~d~~WTkeETDyLfdLc~~fD-LRfiVI~DRy~~~Rt~EdLK~RYY~V 211 (489)
++...||.||-..|+++++.|+ -+|-.|+..++ .||-.+.++||+.+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEW 54 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHH
Confidence 4556899999999999999999 79999998886 79999999999875
No 28
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=95.43 E-value=0.0039 Score=51.13 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=40.1
Q ss_pred cCCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHH
Q 011271 165 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 210 (489)
Q Consensus 165 ~d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~ 210 (489)
....||.||...|+++++.|+-+|--|+...+ .||.++.+.||..
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~-~RT~~qcr~r~~~ 61 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDDWNKVSEHVG-SRTQDECILHFLR 61 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHS-SCCHHHHHHHHTT
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcC-CCCHHHHHHHHHH
Confidence 34689999999999999999999999998776 5999999999963
No 29
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=95.42 E-value=0.0037 Score=55.46 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=44.0
Q ss_pred CCCCChHHHHHHHHHhhhcCc-ceEEEecCCC---CCCCHHHHHHHHHHHHHHH
Q 011271 166 DPMWTKEETDQLFELCERFDL-RFIVIADRFP---SSRTVEELKDRYYGVSRAI 215 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~---~~Rt~EdLK~RYY~V~~kl 215 (489)
-..||.||.+.|.+++++|+- +|-.|...+. ..||--|||+||....+.-
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 457999999999999999998 9999988642 6899999999999887653
No 30
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.17 E-value=0.0049 Score=55.71 Aligned_cols=55 Identities=25% Similarity=0.500 Sum_probs=46.9
Q ss_pred HHHhhhc----CCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHH
Q 011271 159 EYEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRA 214 (489)
Q Consensus 159 EY~~~L~----d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~k 214 (489)
-|..+|. ...||.||-..|++++..|+-+|..|+..++ .||-.++|.||++..++
T Consensus 99 Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~-gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 99 RWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLP-GRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp HHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTST-TCCHHHHHHHHHTTTCC
T ss_pred HHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCC-CCCHHHHHHHHHHHHhc
Confidence 3666664 4589999999999999999999999997664 79999999999986543
No 31
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.67 E-value=0.01 Score=48.26 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=39.8
Q ss_pred CCCCChHHHHHHHHHhhhcCc----ceEEEecCCCCCCCHHHHHHHHHHH
Q 011271 166 DPMWTKEETDQLFELCERFDL----RFIVIADRFPSSRTVEELKDRYYGV 211 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fDL----RfiVI~DRy~~~Rt~EdLK~RYY~V 211 (489)
+..||.+|-..|-+-+..||. ||-.|++..+. ||+||.+.+|-..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 468999999999999999997 89888888776 9999999999754
No 32
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.43 E-value=0.012 Score=45.56 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=39.1
Q ss_pred CCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHH
Q 011271 167 PMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 210 (489)
Q Consensus 167 ~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~ 210 (489)
..||.||-..+.+....|+=+|-.|+ .+-+.||+.|+..+||.
T Consensus 13 ~~WT~eE~~~F~~~~~~~gk~w~~Ia-~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 13 NVWTDHEKEIFKDKFIQHPKNFGLIA-SYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CSCCHHHHHHHHHHHHHSTTCHHHHH-HHCTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHH-HHcCCCCHHHHHHHHHH
Confidence 57999999999999999999999999 55567999999999985
No 33
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=93.52 E-value=0.019 Score=46.33 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=38.2
Q ss_pred CCCCChHHHHHHHHHhhhcC----cceEEEecCCCCCCCHHHHHHHHHHH
Q 011271 166 DPMWTKEETDQLFELCERFD----LRFIVIADRFPSSRTVEELKDRYYGV 211 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fD----LRfiVI~DRy~~~Rt~EdLK~RYY~V 211 (489)
...||.||-..|-.++..|+ =||-.|+.-. .||++|++.+|=..
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 45799999999999999997 6999999886 49999999987443
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=93.49 E-value=0.03 Score=48.93 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=41.9
Q ss_pred cCCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHH
Q 011271 165 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVS 212 (489)
Q Consensus 165 ~d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~ 212 (489)
+-..||.||.+.|.+++..|+..|-.|+..++ .||-.+..+||+.+.
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFP-NRNARQCRDRWKNYL 56 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCT-TCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcC-CCCHHHHHHHHhhhc
Confidence 34579999999999999999999999998875 699999999999754
No 35
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=92.74 E-value=0.046 Score=45.89 Aligned_cols=47 Identities=28% Similarity=0.548 Sum_probs=41.2
Q ss_pred hcCCCCChHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 011271 164 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 211 (489)
Q Consensus 164 L~d~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~~~Rt~EdLK~RYY~V 211 (489)
|.-..||.||...|..+++.|+- +|-.|+..+ ..||-.+.++||..+
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNH 49 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh-cCCCHHHHHHHHHhc
Confidence 34567999999999999999997 799999776 479999999999874
No 36
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=91.84 E-value=0.055 Score=45.81 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=38.9
Q ss_pred CCChHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 011271 168 MWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 211 (489)
Q Consensus 168 ~WTkeETDyLfdLc~~fDL-RfiVI~DRy~~~Rt~EdLK~RYY~V 211 (489)
.||.||-+.|..++..|+- +|..|+...+ .||-.+..+||..+
T Consensus 3 ~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 3 KFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNY 46 (107)
T ss_dssp SSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHH
Confidence 6999999999999999996 8999998765 79999999999764
No 37
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=91.63 E-value=0.063 Score=46.75 Aligned_cols=45 Identities=24% Similarity=0.470 Sum_probs=39.8
Q ss_pred CCCCChHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 011271 166 DPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 211 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~~~Rt~EdLK~RYY~V 211 (489)
-..||.||...|.+++..|+- +|-.|+..++ .||-.+.++||..+
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNH 72 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHh
Confidence 457999999999999999996 6999987764 79999999999863
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=90.19 E-value=0.15 Score=45.91 Aligned_cols=51 Identities=27% Similarity=0.564 Sum_probs=42.9
Q ss_pred HHhhhc----CCCCChHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 011271 160 YEKYLT----DPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 211 (489)
Q Consensus 160 Y~~~L~----d~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~~~Rt~EdLK~RYY~V 211 (489)
|..+|. ...||.||...|++++..|+- +|-.|+..+ +.||-.+.++||+..
T Consensus 48 w~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 48 WQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNH 103 (159)
T ss_dssp HHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS-TTCCHHHHHHHHHHT
T ss_pred HHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHc-CCCCHHHHHHHHHHH
Confidence 444543 468999999999999999996 799998776 479999999999874
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=89.54 E-value=0.18 Score=44.14 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=39.5
Q ss_pred CCCChHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHHH
Q 011271 167 PMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVS 212 (489)
Q Consensus 167 ~~WTkeETDyLfdLc~~fD-LRfiVI~DRy~~~Rt~EdLK~RYY~V~ 212 (489)
..||.||-+.|.+++..|+ -.|..|+...+ .||-.+..+||+.+.
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhcc
Confidence 3599999999999999999 57999987764 699999999998753
No 40
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=89.37 E-value=0.086 Score=43.05 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=34.6
Q ss_pred CCCCChHHHHHHHHHhhhcCc----ceEEEecCCCCCCCHHHHHHHH
Q 011271 166 DPMWTKEETDQLFELCERFDL----RFIVIADRFPSSRTVEELKDRY 208 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fDL----RfiVI~DRy~~~Rt~EdLK~RY 208 (489)
...||+||-..|-.....|+- ||-.|+...+. ||+||++.+|
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY 65 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHY 65 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHH
Confidence 347999999999899999998 77777776664 9999999887
No 41
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=88.38 E-value=0.25 Score=41.90 Aligned_cols=47 Identities=21% Similarity=0.546 Sum_probs=38.1
Q ss_pred CCChHHHHHHHHHhhhcCc---ceEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 011271 168 MWTKEETDQLFELCERFDL---RFIVIADRFPSSRTVEELKDRYYGVSRAI 215 (489)
Q Consensus 168 ~WTkeETDyLfdLc~~fDL---RfiVI~DRy~~~Rt~EdLK~RYY~V~~kl 215 (489)
-||+||-.-++..|++=+- .|.+|+-.. .+||-+++++|||...+-+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L-~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQL-GNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH-SSCCHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHH-ccCCHHHHHHHHHHHHHHH
Confidence 5999999999999999765 666665332 3699999999999988644
No 42
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=79.86 E-value=0.53 Score=45.88 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=40.0
Q ss_pred CCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHH
Q 011271 166 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 210 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~ 210 (489)
...||.||...+.+..+.|+-.|--|++-. ..||+.+.|..||.
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~V-gTKT~~QcKnfY~~ 176 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQAISDVI-GNKSVVQVKNFFVN 176 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHHH-SSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHc-CCCCHHHHHHHHHH
Confidence 568999999999999999999999999874 57999999999984
No 43
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.61 E-value=0.84 Score=35.45 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=39.2
Q ss_pred hcCCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHH
Q 011271 164 LTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYY 209 (489)
Q Consensus 164 L~d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY 209 (489)
+..+.||.||.....+-+..|+=-|.-|+--+-+.||+.|+..=||
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 3457899999999999999999999999854556799999997777
No 44
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=79.61 E-value=0.44 Score=38.47 Aligned_cols=43 Identities=14% Similarity=0.503 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHhhhcCc---ceEEEecCCCCCCCHHHHHHHHHHHH
Q 011271 168 MWTKEETDQLFELCERFDL---RFIVIADRFPSSRTVEELKDRYYGVS 212 (489)
Q Consensus 168 ~WTkeETDyLfdLc~~fDL---RfiVI~DRy~~~Rt~EdLK~RYY~V~ 212 (489)
.||+||-.-++.-|++=+- .|.+|+-.. .||-++++.||-...
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLM 61 (70)
Confidence 5999999999999999888 999999777 699999999996544
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=65.86 E-value=2.9 Score=41.01 Aligned_cols=47 Identities=15% Similarity=0.307 Sum_probs=40.9
Q ss_pred CCCCChHHHHHHHHHhhhcCcc------eEEEecCCCCCCCHHHHHHHHHHHHH
Q 011271 166 DPMWTKEETDQLFELCERFDLR------FIVIADRFPSSRTVEELKDRYYGVSR 213 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fDLR------fiVI~DRy~~~Rt~EdLK~RYY~V~~ 213 (489)
-..||.||-..|+++.++|+-+ |-.|+ .+-+.||--.+|.||..--+
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~ 60 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLS 60 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTG
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHh
Confidence 3579999999999999999987 99999 45668999999999998433
No 46
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=64.93 E-value=3.3 Score=32.76 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=40.5
Q ss_pred CCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHH
Q 011271 167 PMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRA 214 (489)
Q Consensus 167 ~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~k 214 (489)
+.||.||.....+-...|+=-|..|+--+-+.+|+.|+..=|| ..++
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY-~wKk 55 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY-MWKT 55 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH-HHHT
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH-hhcC
Confidence 5799999998889999999999999954677899999998888 4554
No 47
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=56.60 E-value=3 Score=33.65 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=40.4
Q ss_pred CCCCChHHHHHHHHHhhhcCcce----------EEEecCC---CCCCCHHHHHHHHHHHHHHHHHhcC
Q 011271 166 DPMWTKEETDQLFELCERFDLRF----------IVIADRF---PSSRTVEELKDRYYGVSRAILIARA 220 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fDLRf----------iVI~DRy---~~~Rt~EdLK~RYY~V~~kl~~~r~ 220 (489)
...||.+||-.|+++..+.+.+| -.|++.. +..||.++.+.++=.+.+.+-..+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999988764 3333332 2368888888888877777766554
No 48
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=51.48 E-value=7.5 Score=34.34 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 011271 367 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 399 (489)
Q Consensus 367 KrIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 399 (489)
..+.+.|.+.||..-. |+|.+-|..||.|..+
T Consensus 81 p~~~~~l~~~GI~vE~-m~T~aAcrTyNiL~~E 112 (132)
T 2gm2_A 81 TDVLAACLTRGIGLEA-MTNAAAARTYNVLASE 112 (132)
T ss_dssp HHHHHHHHHHTCEEEE-ECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEE-eCHHHHHHHHHHHHhC
Confidence 4678899999999776 9999999999999865
No 49
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=51.13 E-value=8.9 Score=35.42 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=31.1
Q ss_pred CCCChHHHHHHHHHhhhcCc---ceEEEecCCC-CCCCHHHHHHHHHHH
Q 011271 167 PMWTKEETDQLFELCERFDL---RFIVIADRFP-SSRTVEELKDRYYGV 211 (489)
Q Consensus 167 ~~WTkeETDyLfdLc~~fDL---RfiVI~DRy~-~~Rt~EdLK~RYY~V 211 (489)
.+||+.|+-.|..-|.+|+. ||=.|..--. ..+|.|+|++ ||.+
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~-y~~~ 55 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR-LGEL 55 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH-HHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH-HHHH
Confidence 47999999999999999982 4433321101 3689999995 5555
No 50
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=49.56 E-value=7.5 Score=34.55 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 011271 367 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 399 (489)
Q Consensus 367 KrIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 399 (489)
..+...|.+.||.+-. |+|.+-|..||.|..+
T Consensus 84 p~l~~~l~~~GI~vE~-M~T~aAcrTyNiL~~E 115 (135)
T 2fvt_A 84 RQLREALRGVNVVLDT-MQTGPAIRTYNIMIGE 115 (135)
T ss_dssp HHHHHHHHTTTCEEEE-ECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEE-eCHHHHHHHHHHHHhC
Confidence 4678899999999776 9999999999999864
No 51
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=47.97 E-value=7.7 Score=33.80 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 011271 367 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 399 (489)
Q Consensus 367 KrIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 399 (489)
..+...|.+.||..-. |+|.+-|..||.|..+
T Consensus 79 ~~~~~~l~~~gI~ve~-m~T~~A~rtyN~L~~E 110 (122)
T 2ab1_A 79 SSTVEYLKKHGIDVRV-LQTEQAVKEYNALVAQ 110 (122)
T ss_dssp HHHHHHHHHTTCEEEE-ECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEE-eCHHHHHHHHHHHHhC
Confidence 4678899999999776 9999999999999764
No 52
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=46.75 E-value=8.2 Score=33.76 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 011271 367 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 399 (489)
Q Consensus 367 KrIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 399 (489)
..+...|.+.||..-. |+|.+-|..||.|..+
T Consensus 85 p~~~~~l~~~GI~vE~-m~T~aAcrtyNiL~~E 116 (128)
T 2fi9_A 85 EELRVLLWEKRISSDT-MSTGAAVRTFNVLLAE 116 (128)
T ss_dssp HHHHHHHHHTTCEEEE-ECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEE-eCHHHHHHHHHHHHhC
Confidence 3678899999999776 9999999999999764
No 53
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=43.57 E-value=37 Score=26.66 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 011271 386 TKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSYR 421 (489)
Q Consensus 386 T~~Vc~~f~eLR~~Iv~LleLkK~l~k~E~El~~lr 421 (489)
+..+...-++|+..=..+-+||+.++.++.||+++|
T Consensus 41 ~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 41 SEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345556667788888889999999999999999886
No 54
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=39.16 E-value=15 Score=30.53 Aligned_cols=52 Identities=27% Similarity=0.370 Sum_probs=42.3
Q ss_pred HHHHhhhcCCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHH
Q 011271 158 EEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 210 (489)
Q Consensus 158 eEY~~~L~d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~ 210 (489)
..|...-.-+.||.||-....+-...|+=.|..|++ +-+.||+.|+-+=||.
T Consensus 35 ~~~~~r~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~-~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 35 KVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIAS-FLERKTVAECVLYYYL 86 (94)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHSTTCHHHHHH-TCTTCCHHHHHHHHHH
T ss_pred HHHhccCCCCCCCHHHHHHHHHHHHHcCCCHHHHHH-HcCCCCHHHHHHHHhc
Confidence 345443334679999999999999999999999975 4568999999998884
No 55
>4d9a_A 2-pyrone-4,6-dicarbaxylate hydrolase; structural genomics, protein structure initiative; HET: 0GY; 1.35A {Sphingomonas paucimobilis} PDB: 4d95_A* 4di8_A* 4di9_A* 4d9d_A 4dia_A 2qah_A 4d8l_A
Probab=36.76 E-value=51 Score=31.89 Aligned_cols=64 Identities=9% Similarity=0.003 Sum_probs=46.2
Q ss_pred CCCCcccccccccccccCHHHHHhhhc----------CCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHH
Q 011271 139 GDYSFAKYNKSVDVVKYTDEEYEKYLT----------DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEEL 204 (489)
Q Consensus 139 ~~y~FAKfN~kv~vp~YtdeEY~~~L~----------d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdL 204 (489)
..||+.. +-...-..||-++|...|. ..+|...+++||.+.|+++.=||+-|+ -.+...+.++|
T Consensus 39 ~~~p~~~-~~~~~~~~~~~e~l~~~m~~~GI~~~Vlvq~~~~~~dN~~ll~~l~~~~~r~~Gva-~vdp~~~~~eL 112 (303)
T 4d9a_A 39 AQFPFSP-KAKYLPRDAGPDMLFALRDHLGFARNVIVQASCHGTDNAATLDAIARAQGKARGIA-VVDPAIDEAEL 112 (303)
T ss_dssp TTSCCCT-TCSCCBCCBCHHHHHHHHHHHTCSEEEEECCGGGTTCCHHHHHHHHHTTTSEEEEE-CCCTTCCHHHH
T ss_pred ccCCCCC-CCCCcCCCCCHHHHHHHHHHcCCCeEEEeccccccccHHHHHHHHHhCCCcEEEEE-EeCCCCCHHHH
Confidence 4688764 2222224799999988874 467888999999998889988888777 33444566666
No 56
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=36.63 E-value=17 Score=33.26 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=39.9
Q ss_pred cceEeehHH-HHHHHHhhcccchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011271 341 LRVYLRTYA-LEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEG 417 (489)
Q Consensus 341 ~GVyLRS~~-l~~~~~a~~~~~g~k~~KrIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~Iv~LleLkK~l~k~E~El 417 (489)
-||.||-+. +.+. ..-+=++|..+|+|-|+. |.+| ++|..-|---+.|||+|+.--.+.
T Consensus 50 IG~iLRD~~GIp~V--------k~vtG~kI~rILk~~gla--peiP--------EDL~~LikKAv~lrkHLe~n~kD~ 109 (151)
T 3u5c_N 50 IGVLLRDAHGVTQA--------RVITGNKIMRILKSNGLA--PEIP--------EDLYYLIKKAVSVRKHLERNRKDK 109 (151)
T ss_dssp HHHHHHHHTTCSCH--------HHHSSSCHHHHHHHTTCC--CSSC--------HHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hhhHHhccCCCCCe--------eeecccHHHHHHHhCCCC--CCCc--------HHHHHHHHHHHHHHHHHHHccccH
Confidence 499999874 2211 112225799999999995 6677 567777777778888887644443
No 57
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=32.08 E-value=29 Score=23.61 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCcc
Q 011271 395 ELRKEILTLLNLQKQLQYKEAEGSSYRDGSY 425 (489)
Q Consensus 395 eLR~~Iv~LleLkK~l~k~E~El~~lr~~~~ 425 (489)
.|.++|.. |+|.+..+.+|+..|++.|+
T Consensus 6 alkqeiaa---lkkeiaalkfeiaalkqgyy 33 (33)
T 4dzn_A 6 ALKQEIAA---LKKEIAALKFEIAALKQGYY 33 (33)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHcccC
Confidence 45666654 68899999999999987653
No 58
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=30.52 E-value=22 Score=32.60 Aligned_cols=59 Identities=24% Similarity=0.356 Sum_probs=38.9
Q ss_pred cceEeehHH-HHHHHHhhcccchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011271 341 LRVYLRTYA-LEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEG 417 (489)
Q Consensus 341 ~GVyLRS~~-l~~~~~a~~~~~g~k~~KrIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~Iv~LleLkK~l~k~E~El 417 (489)
-||.||-+. +.+ +..-+=++|..+|+|-|+. |.+| ++|..-|---+.|||+|+.--.+.
T Consensus 52 IG~iLRD~~GIp~--------Vk~vtG~kI~rILk~~gla--peiP--------EDL~~LikKAv~lRkHLe~n~kD~ 111 (153)
T 2xzm_O 52 IGVILRDQHGIPQ--------VRFLTGQKILRILKKNGCA--PQLP--------EDLYFLIKKALSIRKHLEKNRKDK 111 (153)
T ss_dssp HHHHHHHSSCCSC--------HHHHHSSCHHHHHHHTTCC--CSSC--------HHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred hhhHHhhcCCCCC--------eeeeccchHHHHHHHcCCC--CCCc--------HHHHHHHHHHHHHHHHHHHcccch
Confidence 488988763 211 1112235799999999994 6677 456666666777888887644333
No 59
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=27.97 E-value=22 Score=34.97 Aligned_cols=39 Identities=21% Similarity=0.469 Sum_probs=22.0
Q ss_pred cccccccCHHHHHhhhcCCCCChHHHHHHHHHhhhc-----------CcceEEEecC
Q 011271 149 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF-----------DLRFIVIADR 194 (489)
Q Consensus 149 kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~~f-----------DLRfiVI~DR 194 (489)
.++|+-||-|-+.+ +++|.+.||+|+++| ++|+-||-|+
T Consensus 64 ~lTlYaFStENwkR-------p~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~iGd~ 113 (253)
T 3sgv_B 64 ALTLYAFSSENWNR-------PAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDT 113 (253)
T ss_dssp EEEEECC------------------CHHHHHHHHTTHHHHHHHHHHTTCEEEEESCG
T ss_pred EEEEEEEchhccCC-------CHHHHHHHHHHHHHHHHHHHHHHHHCCeEEEEEeeh
Confidence 36777888776643 568999999998765 6788888765
No 60
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=26.41 E-value=43 Score=33.69 Aligned_cols=59 Identities=29% Similarity=0.411 Sum_probs=43.3
Q ss_pred cccCHHHH---HhhhcC--CCCChHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHHHH
Q 011271 153 VKYTDEEY---EKYLTD--PMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGVSR 213 (489)
Q Consensus 153 p~YtdeEY---~~~L~d--~~WTkeETDyLfdLc~~fDL-RfiVI~DRy~~~Rt~EdLK~RYY~V~~ 213 (489)
.-+|+||= +.+|.. .+||+.+--.++.-|..|+- .|--|+.=+ ...|+||+ .|||.|-=
T Consensus 92 ~~LTeeE~~eKe~Ll~eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev-~~Kt~eEV-~~Y~~vFw 156 (304)
T 1ofc_X 92 EPLTEEEIQEKENLLSQGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDV-EGKTPEEV-IEYNAVFW 156 (304)
T ss_dssp CCCCHHHHHHHHHHTTSSCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSS-TTCCHHHH-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHhCHHHHHHHHHHh-cCCCHHHH-HHHHHHHH
Confidence 34788764 566664 48999999999999999985 333333333 26999999 88998865
No 61
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=24.93 E-value=27 Score=31.76 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 011271 367 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 399 (489)
Q Consensus 367 KrIe~~L~ELgv~~kP~mPT~~Vc~~f~eLR~~ 399 (489)
..+...|.+.||.+-. |.|.+-|..||.|..+
T Consensus 105 p~~~~~L~~~GIgvE~-M~T~aA~rTyNiL~~E 136 (150)
T 3cpk_A 105 PEQVRPLLAMGVGVEA-MDTQAAARTYNILMAE 136 (150)
T ss_dssp HHHHHHHHTTTCEEEE-ECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEE-eCHHHHHHHHHHHHhC
Confidence 3678899999999765 9999999999999764
No 62
>3ku7_A MINE, cell division topological specificity factor; cell cycle; 2.80A {Helicobacter pylori} PDB: 3mcd_A
Probab=24.36 E-value=94 Score=25.38 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=28.8
Q ss_pred cceEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Q 011271 186 LRFIVIADRFPSSRTVEELKDRYYGVSRAILI 217 (489)
Q Consensus 186 LRfiVI~DRy~~~Rt~EdLK~RYY~V~~kl~~ 217 (489)
|+.|++|||-..+-.||.||.=-+.|..+++.
T Consensus 23 LqliLa~dR~~~p~~l~~lk~eil~VIskYv~ 54 (80)
T 3ku7_A 23 LKLILAKERTLNLPYMEEMRKEIIAVIQKYTK 54 (80)
T ss_dssp EEEEEEEESSCCCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 78999999954677999999999999999986
No 63
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=22.49 E-value=71 Score=26.80 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=29.6
Q ss_pred cceEEEecCCC---CCCCHHHHHHHHHHHHHHHHHh
Q 011271 186 LRFIVIADRFP---SSRTVEELKDRYYGVSRAILIA 218 (489)
Q Consensus 186 LRfiVI~DRy~---~~Rt~EdLK~RYY~V~~kl~~~ 218 (489)
|..|+++||.+ ++-.||.||.--..|..++++.
T Consensus 22 LqlILahdR~~~~~~pd~l~~lk~eIl~VIsKYv~I 57 (95)
T 2kxo_A 22 LQIIIAQERAQEGQTPDYLPTLRKALMEVLSKYVNV 57 (95)
T ss_dssp EEEEEEEEECSSCCCCCSHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHheec
Confidence 78999999983 4789999999999999999876
No 64
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=22.45 E-value=74 Score=27.22 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=19.6
Q ss_pred hcccchhhHHHHHHHHHHHhCCCCC
Q 011271 357 ASSSAGLRTIKRVEQALQELGVNLK 381 (489)
Q Consensus 357 ~~~~~g~k~~KrIe~~L~ELgv~~k 381 (489)
.|.+....++|-|-.+|.|||||..
T Consensus 29 ~P~sMdESTAKGifKyL~elGvPas 53 (115)
T 2es9_A 29 VPHSMDESTAKGILKYLHDLGVPVS 53 (115)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCccchHHHHHHHHHHHHcCCCCC
Confidence 3455566788999999999999844
No 65
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=22.25 E-value=21 Score=34.43 Aligned_cols=38 Identities=29% Similarity=0.611 Sum_probs=28.5
Q ss_pred ccccccCHHHHHhhhcCCCCChHHHHHHHHHhhh-----------cCcceEEEecC
Q 011271 150 VDVVKYTDEEYEKYLTDPMWTKEETDQLFELCER-----------FDLRFIVIADR 194 (489)
Q Consensus 150 v~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~~-----------fDLRfiVI~DR 194 (489)
++|+-||.|-+.+ +++|.+.||+|+++ .++|.-||-|+
T Consensus 54 lTlYaFStENw~R-------p~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~iGd~ 102 (225)
T 3ugs_B 54 LSLFAFSTENWKR-------PKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDL 102 (225)
T ss_dssp EEEEEEESGGGGS-------CHHHHHHHHHHHHHHHHHHHHHSTTTTEEEEEESCG
T ss_pred EEEEEEcccccCC-------CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeCh
Confidence 5667777665543 67999999999875 46788888765
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=21.22 E-value=30 Score=36.97 Aligned_cols=43 Identities=21% Similarity=0.420 Sum_probs=38.0
Q ss_pred CCCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHH
Q 011271 166 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYY 209 (489)
Q Consensus 166 d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY 209 (489)
...||.||...+.+..++|+=.|--|++-. ..||+.+.|.-||
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~V-gTKT~~Qvk~fy~ 422 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQAISDVI-GNKSVVQVKNFFV 422 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHHHHHHHH-SSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHh-CCCCHHHHHHHHH
Confidence 458999999999999999999999999774 4789999998666
No 67
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=21.10 E-value=27 Score=33.47 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=28.3
Q ss_pred cccccccCHHHHHhhhcCCCCChHHHHHHHHHhhh---------cCcceEEEecCC
Q 011271 149 SVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCER---------FDLRFIVIADRF 195 (489)
Q Consensus 149 kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~~---------fDLRfiVI~DRy 195 (489)
.++||.||.|-+.+ +.+|.+.||+|+++ +++|+-+|.|+-
T Consensus 50 ~lTlYaFSteN~kR-------p~~Ev~~Lm~l~~~~l~~~~~~~~~vrv~~iG~~~ 98 (227)
T 2vg0_A 50 LATVYLLSTENLQR-------DPDELAALIEIITDVVEEICAPANHWSVRTVGDLG 98 (227)
T ss_dssp EEEEEEEETGGGGS-------CHHHHHHHHHHHHHHHHHHTCTTTCCEEEEESCGG
T ss_pred EEEEEeecccccCC-------CHHHHHHHHHHHHHHHHHHhccccCeEEEecCChh
Confidence 35666666443331 45899999999865 588999998764
Done!