Query 011273
Match_columns 489
No_of_seqs 325 out of 1799
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 04:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.9 4.1E-27 1.4E-31 187.7 6.2 63 101-163 1-63 (64)
2 3f6p_A Transcriptional regulat 97.2 0.00019 6.5E-09 59.0 3.6 41 1-41 79-119 (120)
3 3gl9_A Response regulator; bet 97.2 0.00029 9.8E-09 58.2 4.4 40 1-40 82-121 (122)
4 2pl1_A Transcriptional regulat 97.2 0.00045 1.5E-08 55.8 5.4 42 1-42 78-119 (121)
5 3t6k_A Response regulator rece 97.2 0.00032 1.1E-08 59.0 4.6 43 1-43 84-126 (136)
6 3h1g_A Chemotaxis protein CHEY 97.1 0.00026 9E-09 58.7 3.8 41 1-41 87-127 (129)
7 2r25_B Osmosensing histidine p 97.1 0.00029 9.9E-09 59.0 3.8 42 1-42 87-128 (133)
8 1zgz_A Torcad operon transcrip 97.1 0.00051 1.7E-08 55.7 5.1 42 1-42 79-120 (122)
9 1xhf_A DYE resistance, aerobic 97.1 0.00058 2E-08 55.5 5.0 41 2-42 81-121 (123)
10 3kht_A Response regulator; PSI 97.0 0.00072 2.5E-08 56.7 5.6 44 1-44 87-131 (144)
11 1jbe_A Chemotaxis protein CHEY 97.0 0.00076 2.6E-08 55.2 5.4 42 1-42 85-126 (128)
12 3crn_A Response regulator rece 97.0 0.00073 2.5E-08 56.2 5.4 43 1-43 81-123 (132)
13 1zh2_A KDP operon transcriptio 97.0 0.00067 2.3E-08 54.6 5.0 42 1-42 78-119 (121)
14 2a9o_A Response regulator; ess 97.0 0.0006 2.1E-08 54.8 4.6 41 1-41 78-118 (120)
15 1p6q_A CHEY2; chemotaxis, sign 97.0 0.0007 2.4E-08 55.5 5.0 41 1-41 87-127 (129)
16 2qzj_A Two-component response 97.0 0.00075 2.6E-08 56.7 5.3 43 1-43 81-123 (136)
17 1dbw_A Transcriptional regulat 97.0 0.00058 2E-08 56.0 4.4 41 1-41 81-121 (126)
18 3cfy_A Putative LUXO repressor 97.0 0.00086 3E-08 56.4 5.5 43 1-43 82-124 (137)
19 3hdg_A Uncharacterized protein 97.0 0.00086 2.9E-08 55.6 5.4 44 1-44 85-128 (137)
20 3kto_A Response regulator rece 97.0 0.00083 2.8E-08 56.1 5.1 44 1-44 86-129 (136)
21 1dcf_A ETR1 protein; beta-alph 96.9 0.00062 2.1E-08 56.6 4.1 41 1-41 89-129 (136)
22 1dz3_A Stage 0 sporulation pro 96.9 0.00041 1.4E-08 57.3 2.9 43 1-43 83-125 (130)
23 1k68_A Phytochrome response re 96.9 0.0011 3.8E-08 54.4 5.5 44 1-44 91-134 (140)
24 3jte_A Response regulator rece 96.9 0.001 3.6E-08 55.5 5.3 44 1-44 83-126 (143)
25 3lua_A Response regulator rece 96.9 0.00061 2.1E-08 56.9 3.7 44 1-44 87-130 (140)
26 1i3c_A Response regulator RCP1 96.9 0.0012 4E-08 56.2 5.3 43 1-43 97-139 (149)
27 3b2n_A Uncharacterized protein 96.8 0.00094 3.2E-08 55.6 4.3 42 1-42 83-124 (133)
28 1k66_A Phytochrome response re 96.8 0.0015 5E-08 54.4 5.5 44 1-44 98-141 (149)
29 1tmy_A CHEY protein, TMY; chem 96.8 0.00096 3.3E-08 53.9 4.2 39 1-39 81-119 (120)
30 3cnb_A DNA-binding response re 96.8 0.0014 4.6E-08 54.4 5.2 43 2-44 91-133 (143)
31 2zay_A Response regulator rece 96.8 0.0013 4.3E-08 55.3 5.0 44 1-44 88-131 (147)
32 3hv2_A Response regulator/HD d 96.8 0.0017 5.9E-08 55.3 5.7 44 1-44 92-136 (153)
33 1srr_A SPO0F, sporulation resp 96.8 0.00067 2.3E-08 55.4 2.9 40 1-40 81-120 (124)
34 3gt7_A Sensor protein; structu 96.7 0.0014 4.8E-08 56.2 5.0 44 1-44 87-130 (154)
35 3cg0_A Response regulator rece 96.7 0.0015 5.2E-08 54.0 4.9 44 1-44 88-131 (140)
36 4e7p_A Response regulator; DNA 96.7 0.0012 4.2E-08 56.0 4.4 43 1-43 100-142 (150)
37 3cu5_A Two component transcrip 96.7 0.0006 2E-08 57.7 2.4 44 1-44 83-126 (141)
38 3r0j_A Possible two component 96.7 0.0015 5.1E-08 60.9 5.2 43 1-43 101-143 (250)
39 3heb_A Response regulator rece 96.6 0.0021 7.1E-08 54.5 5.3 43 1-43 95-137 (152)
40 3eul_A Possible nitrate/nitrit 96.6 0.0018 6.1E-08 55.0 4.9 43 1-43 95-137 (152)
41 3m6m_D Sensory/regulatory prot 96.6 0.0015 5E-08 55.5 4.2 41 1-41 96-136 (143)
42 2jba_A Phosphate regulon trans 96.6 0.00057 2E-08 55.7 1.5 41 2-42 83-123 (127)
43 3hdv_A Response regulator; PSI 96.6 0.0017 5.7E-08 53.8 4.4 43 1-43 87-129 (136)
44 3eod_A Protein HNR; response r 96.6 0.0011 3.9E-08 54.4 3.3 42 1-42 85-127 (130)
45 3rqi_A Response regulator prot 96.6 0.00089 3E-08 59.6 2.8 43 1-43 85-127 (184)
46 1mb3_A Cell division response 96.6 0.00096 3.3E-08 54.1 2.7 40 2-41 82-121 (124)
47 2qxy_A Response regulator; reg 96.6 0.0019 6.4E-08 53.9 4.3 43 1-43 81-123 (142)
48 1qo0_D AMIR; binding protein, 96.6 0.0018 6E-08 57.8 4.4 43 1-43 85-127 (196)
49 3nhm_A Response regulator; pro 96.5 0.0014 4.8E-08 53.9 3.1 42 2-44 84-125 (133)
50 3f6c_A Positive transcription 96.5 0.00087 3E-08 55.2 1.8 42 2-43 81-122 (134)
51 3h5i_A Response regulator/sens 96.5 0.00058 2E-08 57.4 0.7 43 2-44 85-127 (140)
52 1qkk_A DCTD, C4-dicarboxylate 96.5 0.0028 9.4E-08 53.9 5.0 43 1-43 81-123 (155)
53 1mvo_A PHOP response regulator 96.5 0.0015 5.1E-08 54.0 3.1 41 2-42 82-122 (136)
54 3grc_A Sensor protein, kinase; 96.5 0.0013 4.3E-08 54.8 2.7 43 2-44 87-130 (140)
55 2qr3_A Two-component system re 96.4 0.0015 5.3E-08 54.0 3.2 42 2-43 87-128 (140)
56 3n53_A Response regulator rece 96.4 0.00081 2.8E-08 56.2 1.4 43 2-44 83-125 (140)
57 1dc7_A NTRC, nitrogen regulati 96.4 0.00049 1.7E-08 55.5 0.0 42 1-42 81-122 (124)
58 3kcn_A Adenylate cyclase homol 96.4 0.0031 1.1E-07 53.5 4.7 44 1-44 82-126 (151)
59 1a04_A Nitrate/nitrite respons 96.4 0.0031 1.1E-07 56.8 4.9 42 1-42 85-126 (215)
60 3cz5_A Two-component response 96.3 0.0024 8.1E-08 54.2 3.4 42 2-43 86-127 (153)
61 3q9s_A DNA-binding response re 96.2 0.0025 8.6E-08 60.0 3.8 42 1-42 114-155 (249)
62 3dzd_A Transcriptional regulat 96.2 0.0033 1.1E-07 63.7 4.7 43 1-43 78-120 (368)
63 1s8n_A Putative antiterminator 96.2 0.0019 6.5E-08 58.0 2.5 43 1-43 91-133 (205)
64 2rjn_A Response regulator rece 96.1 0.0055 1.9E-07 52.0 5.0 43 1-43 85-128 (154)
65 1p2f_A Response regulator; DRR 96.1 0.0049 1.7E-07 55.7 5.0 42 1-42 77-118 (220)
66 2qsj_A DNA-binding response re 96.1 0.003 1E-07 53.5 3.3 43 1-43 84-126 (154)
67 2jk1_A HUPR, hydrogenase trans 96.1 0.0055 1.9E-07 51.1 4.7 42 1-42 78-120 (139)
68 2qvg_A Two component response 96.1 0.005 1.7E-07 51.2 4.3 40 2-41 96-135 (143)
69 3lte_A Response regulator; str 96.0 0.0042 1.4E-07 50.9 3.6 37 6-42 90-126 (132)
70 3cg4_A Response regulator rece 96.0 0.001 3.5E-08 55.4 -0.2 43 2-44 88-130 (142)
71 1yio_A Response regulatory pro 96.0 0.0024 8.1E-08 57.2 2.3 42 1-42 82-123 (208)
72 1kgs_A DRRD, DNA binding respo 96.0 0.0036 1.2E-07 56.5 3.4 43 1-43 80-122 (225)
73 2qv0_A Protein MRKE; structura 96.0 0.0065 2.2E-07 50.6 4.6 36 9-44 95-130 (143)
74 1ny5_A Transcriptional regulat 95.9 0.0052 1.8E-07 62.5 4.5 42 1-42 78-119 (387)
75 2hqr_A Putative transcriptiona 95.9 0.0042 1.4E-07 56.3 3.3 42 1-42 74-116 (223)
76 1w25_A Stalked-cell differenti 95.9 0.0068 2.3E-07 61.5 5.1 42 1-42 81-122 (459)
77 3klo_A Transcriptional regulat 95.8 0.0023 7.8E-08 58.6 1.2 42 1-42 89-130 (225)
78 3i42_A Response regulator rece 95.8 0.0019 6.6E-08 52.8 0.7 40 2-42 84-123 (127)
79 3eqz_A Response regulator; str 95.6 0.0033 1.1E-07 51.4 1.4 35 8-42 92-126 (135)
80 2gkg_A Response regulator homo 95.6 0.0076 2.6E-07 48.4 3.5 37 5-41 89-125 (127)
81 3bre_A Probable two-component 95.5 0.014 4.9E-07 56.8 5.4 40 1-40 99-138 (358)
82 2oqr_A Sensory transduction pr 95.4 0.0055 1.9E-07 55.6 2.0 42 1-42 81-122 (230)
83 3eq2_A Probable two-component 95.3 0.012 4E-07 58.9 4.4 42 1-42 83-125 (394)
84 1ys7_A Transcriptional regulat 95.3 0.0038 1.3E-07 56.7 0.7 42 2-43 86-127 (233)
85 3c3m_A Response regulator rece 95.1 0.0099 3.4E-07 49.6 2.5 41 2-42 84-124 (138)
86 3c3w_A Two component transcrip 95.1 0.0042 1.4E-07 57.0 0.2 43 1-43 81-123 (225)
87 2gwr_A DNA-binding response re 95.0 0.0054 1.9E-07 56.5 0.8 41 2-42 83-123 (238)
88 3kyj_B CHEY6 protein, putative 94.0 0.0096 3.3E-07 50.0 -0.0 33 4-36 98-130 (145)
89 3sy8_A ROCR; TIM barrel phosph 93.7 0.034 1.2E-06 56.1 3.4 42 2-43 84-130 (400)
90 2rdm_A Response regulator rece 93.1 0.048 1.6E-06 44.4 2.7 41 2-44 86-126 (132)
91 3a10_A Response regulator; pho 92.9 0.035 1.2E-06 44.3 1.7 29 11-39 87-115 (116)
92 2lpm_A Two-component response 92.1 0.019 6.4E-07 50.0 -1.1 28 13-40 94-121 (123)
93 3c97_A Signal transduction his 91.5 0.11 3.7E-06 43.1 3.0 28 15-42 104-131 (140)
94 2j48_A Two-component sensor ki 90.9 0.038 1.3E-06 43.3 -0.3 28 12-39 89-116 (119)
95 3luf_A Two-component system re 90.4 0.28 9.7E-06 46.4 5.2 28 1-28 80-107 (259)
96 2vyc_A Biodegradative arginine 89.9 0.067 2.3E-06 59.3 0.4 42 2-43 92-135 (755)
97 3t8y_A CHEB, chemotaxis respon 89.2 0.099 3.4E-06 45.2 0.9 24 8-31 113-136 (164)
98 1a2o_A CHEB methylesterase; ba 88.9 0.24 8.3E-06 49.8 3.6 35 8-42 91-134 (349)
99 3cwo_X Beta/alpha-barrel prote 87.1 0.29 1E-05 44.0 2.7 40 2-41 60-101 (237)
100 2pln_A HP1043, response regula 86.7 0.37 1.3E-05 39.6 2.8 27 1-27 92-118 (137)
101 2hzd_A Transcriptional enhance 86.6 0.62 2.1E-05 38.7 4.1 57 105-161 4-76 (82)
102 1w25_A Stalked-cell differenti 84.8 0.95 3.2E-05 45.7 5.3 42 2-43 231-272 (459)
103 3q7r_A Transcriptional regulat 82.9 1.7 6E-05 37.8 5.3 36 6-42 84-119 (121)
104 2yum_A ZZZ3 protein, zinc fing 82.8 1.2 4.2E-05 35.1 4.1 52 105-158 6-60 (75)
105 2cu7_A KIAA1915 protein; nucle 78.4 3.8 0.00013 32.1 5.6 50 103-157 5-54 (72)
106 2yus_A SWI/SNF-related matrix- 76.9 3.7 0.00013 33.3 5.3 48 104-156 15-62 (79)
107 2b4a_A BH3024; flavodoxin-like 74.0 1.1 3.7E-05 36.8 1.3 24 18-41 108-131 (138)
108 2cqq_A RSGI RUH-037, DNAJ homo 66.8 4.2 0.00014 32.5 3.3 44 107-155 8-54 (72)
109 1x41_A Transcriptional adaptor 63.4 13 0.00043 28.1 5.3 49 104-156 5-53 (60)
110 2cqr_A RSGI RUH-043, DNAJ homo 57.5 29 0.001 27.7 6.6 48 107-156 18-66 (73)
111 2xag_B REST corepressor 1; ami 51.8 15 0.00051 39.3 5.2 52 104-160 377-428 (482)
112 2iw5_B Protein corest, REST co 49.6 17 0.00056 35.5 4.7 55 100-159 126-180 (235)
113 3sjm_A Telomeric repeat-bindin 45.1 42 0.0014 25.9 5.6 53 104-161 8-60 (64)
114 2dmq_A LIM/homeobox protein LH 36.2 84 0.0029 24.4 6.2 63 101-165 5-67 (80)
115 2cjj_A Radialis; plant develop 35.4 41 0.0014 28.1 4.4 49 107-157 8-57 (93)
116 4eef_G F-HB80.4, designed hema 34.8 9.2 0.00031 31.2 0.3 45 108-154 21-66 (74)
117 2elk_A SPCC24B10.08C protein; 33.6 90 0.0031 23.2 5.7 47 107-156 9-55 (58)
118 2da3_A Alpha-fetoprotein enhan 33.3 48 0.0016 25.7 4.3 61 100-162 14-74 (80)
119 2d9a_A B-MYB, MYB-related prot 28.9 1E+02 0.0036 22.7 5.4 49 103-155 4-52 (60)
120 1guu_A C-MYB, MYB proto-oncoge 28.8 94 0.0032 22.2 4.9 45 107-155 3-47 (52)
121 2dms_A Homeobox protein OTX2; 28.4 95 0.0033 24.2 5.3 63 101-165 5-67 (80)
122 2e1o_A Homeobox protein PRH; D 28.3 1E+02 0.0034 23.4 5.3 61 101-163 5-65 (70)
123 1wgx_A KIAA1903 protein; MYB D 26.7 59 0.002 26.1 3.8 45 109-155 10-55 (73)
124 1ity_A TRF1; helix-turn-helix, 24.0 1.5E+02 0.0053 22.5 5.7 56 102-162 5-60 (69)
125 2yqk_A Arginine-glutamic acid 24.0 49 0.0017 25.3 2.7 45 102-150 4-48 (63)
126 1gvd_A MYB proto-oncogene prot 22.5 1.4E+02 0.0046 21.4 4.8 46 107-156 3-48 (52)
127 1wh5_A ZF-HD homeobox family p 21.5 1.3E+02 0.0046 23.7 5.0 60 102-161 16-77 (80)
128 2dim_A Cell division cycle 5-l 21.3 1.7E+02 0.0059 22.2 5.4 49 103-155 5-53 (70)
129 2dmu_A Homeobox protein goosec 20.7 1.4E+02 0.0048 22.5 4.8 61 101-163 5-65 (70)
130 2eqr_A N-COR1, N-COR, nuclear 20.3 72 0.0025 24.1 3.0 45 103-152 8-52 (61)
131 1wh7_A ZF-HD homeobox family p 20.3 1.3E+02 0.0046 23.9 4.7 60 101-161 15-77 (80)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.93 E-value=4.1e-27 Score=187.65 Aligned_cols=63 Identities=57% Similarity=0.936 Sum_probs=60.6
Q ss_pred CccccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhhhhhHhhh
Q 011273 101 SSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRL 163 (489)
Q Consensus 101 ~t~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~~~~~ 163 (489)
++.+|+|++||+|||++||+||++||.++||||+||++|+|+|||++||+|||||||++++|.
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 367899999999999999999999999999999999999999999999999999999999874
No 2
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=97.22 E-value=0.00019 Score=58.96 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=36.3
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr 41 (489)
+|+..+.....+++++||++||.||++.++|..++++++++
T Consensus 79 ~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 79 LTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp EEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred EECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 35677788889999999999999999999999999988764
No 3
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=97.19 E-value=0.00029 Score=58.19 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=36.1
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 40 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLR 40 (489)
+|+..+.+...+++++||++||.||++.++|..+++++++
T Consensus 82 ~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 82 LTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 4677888899999999999999999999999999998764
No 4
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=97.18 E-value=0.00045 Score=55.83 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=37.3
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 78 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 78 LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 356777888899999999999999999999999999988764
No 5
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=97.17 E-value=0.00032 Score=58.96 Aligned_cols=43 Identities=28% Similarity=0.512 Sum_probs=37.5
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+...+++++||++||.||++.++|..++++++++..
T Consensus 84 ~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 84 LTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp EECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred EecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 4677888889999999999999999999999999999987653
No 6
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=97.15 E-value=0.00026 Score=58.66 Aligned_cols=41 Identities=20% Similarity=0.493 Sum_probs=36.7
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr 41 (489)
+|+..+...+.+++++||++||.||++.++|..+++.++++
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 87 ITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 46778888899999999999999999999999999988753
No 7
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=97.12 E-value=0.00029 Score=59.04 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=37.1
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+|++.+.+.+.+++++||++||.||++.++|...+++++.+.
T Consensus 87 lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 128 (133)
T 2r25_B 87 LTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY 128 (133)
T ss_dssp EESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence 467788889999999999999999999999999998876543
No 8
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=97.11 E-value=0.00051 Score=55.73 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=37.2
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+|+..+.+...+++++||++||.||++.++|..++++++++.
T Consensus 79 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 79 VTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 356777888899999999999999999999999999988764
No 9
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=97.06 E-value=0.00058 Score=55.47 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=36.5
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
|+..+.....+++++||++||.||++.++|..++++++++.
T Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 56677788899999999999999999999999999988664
No 10
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=97.04 E-value=0.00072 Score=56.74 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=39.7
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~-~~eEL~~i~q~vLRrr~~ 44 (489)
+|+..+.+.+.+++++||++||.||+ +.++|..+++++++++..
T Consensus 87 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 87 LTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp EETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHh
Confidence 35677888999999999999999999 999999999999988765
No 11
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=97.03 E-value=0.00076 Score=55.16 Aligned_cols=42 Identities=21% Similarity=0.495 Sum_probs=37.2
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+|+..+.+...++++.||++||.||++.++|...+++++++.
T Consensus 85 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 356777888999999999999999999999999999988653
No 12
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=97.03 E-value=0.00073 Score=56.19 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=37.9
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+...+++++||++||.||++.++|...+++++++..
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 123 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQE 123 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhccc
Confidence 3667788889999999999999999999999999999886643
No 13
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=97.02 E-value=0.00067 Score=54.64 Aligned_cols=42 Identities=31% Similarity=0.486 Sum_probs=37.1
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+|+..+.....++++.||.+||.||++.++|...+++++++.
T Consensus 78 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 78 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 356677888899999999999999999999999999988754
No 14
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=97.02 E-value=0.0006 Score=54.82 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=36.1
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr 41 (489)
+|+..+.....+++++||.+||.||++.++|..++++++++
T Consensus 78 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 78 LSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred EecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 35667778888999999999999999999999999988765
No 15
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=97.01 E-value=0.0007 Score=55.46 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=37.1
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr 41 (489)
+|+..+.....++++.||.+||.||++.++|..++++++++
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 87 LTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 57778888899999999999999999999999999988764
No 16
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=97.01 E-value=0.00075 Score=56.68 Aligned_cols=43 Identities=23% Similarity=0.458 Sum_probs=37.8
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+.+.++++.||++||.||++.++|..++++++++..
T Consensus 81 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 81 MTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMN 123 (136)
T ss_dssp EESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhh
Confidence 3567778889999999999999999999999999999887654
No 17
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=97.00 E-value=0.00058 Score=56.04 Aligned_cols=41 Identities=15% Similarity=0.329 Sum_probs=36.5
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr 41 (489)
+|+..+.+...++++.||++||.||++.++|..++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 36677888899999999999999999999999999988754
No 18
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.98 E-value=0.00086 Score=56.38 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=37.8
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+...++++.||.+||.||++.++|..++++++++..
T Consensus 82 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (137)
T 3cfy_A 82 ATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAK 124 (137)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 3566778889999999999999999999999999999887644
No 19
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=96.98 E-value=0.00086 Score=55.64 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=39.7
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
+|+..+.+...+++++||++||.||++.++|...++++++....
T Consensus 85 ~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 85 ISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp CCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 57778888999999999999999999999999999999887654
No 20
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=96.95 E-value=0.00083 Score=56.13 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=38.7
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
+|+..+.+.+.+++++||++||.||++.++|..+++++++....
T Consensus 86 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 86 MASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred EEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 46778888899999999999999999999999999999877643
No 21
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=96.93 E-value=0.00062 Score=56.59 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=36.1
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr 41 (489)
+|+..+.....+++++||++||.||++.++|...++++++.
T Consensus 89 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 89 LSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp EESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred EeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 35677788889999999999999999999999999988754
No 22
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=96.93 E-value=0.00041 Score=57.29 Aligned_cols=43 Identities=28% Similarity=0.479 Sum_probs=37.2
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+...+++++||++||.||++.++|...+++++++..
T Consensus 83 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 125 (130)
T 1dz3_A 83 LTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKTT 125 (130)
T ss_dssp EEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC-
T ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 3566778889999999999999999999999999999886643
No 23
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=96.92 E-value=0.0011 Score=54.37 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=38.7
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
+|+..+.+.+.+++++||++||.||++.++|...+++++++...
T Consensus 91 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 134 (140)
T 1k68_A 91 LSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLS 134 (140)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred EecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHcc
Confidence 35667788899999999999999999999999999999877643
No 24
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=96.91 E-value=0.001 Score=55.53 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=38.8
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
+|+..+.+...+++++||++||.||++.++|...++++++++..
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 126 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL 126 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999999999999999999877643
No 25
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=96.88 E-value=0.00061 Score=56.95 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=37.5
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
+|+..+.+.+.+++++||++||.||++.++|..++++++++...
T Consensus 87 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 87 ATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp EESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 46778888999999999999999999999999999999876543
No 26
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=96.85 E-value=0.0012 Score=56.22 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=37.8
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+.+.+++++||.+||.||++.++|..+++++++...
T Consensus 97 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 139 (149)
T 1i3c_A 97 LTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFWL 139 (149)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred EECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Confidence 3566778889999999999999999999999999999887654
No 27
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=96.82 E-value=0.00094 Score=55.59 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=36.2
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+|+..+.+...++++.||.+||.||++.++|...+++++++.
T Consensus 83 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 83 VTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 366778888999999999999999999999999999987553
No 28
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=96.81 E-value=0.0015 Score=54.36 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=38.8
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
+|+..+.+...+++++||++||.||++.++|...+++++++...
T Consensus 98 ~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 141 (149)
T 1k66_A 98 MTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWLD 141 (149)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 35667788899999999999999999999999999999887643
No 29
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=96.80 E-value=0.00096 Score=53.92 Aligned_cols=39 Identities=23% Similarity=0.434 Sum_probs=34.4
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF 39 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vL 39 (489)
+|+..+.+...++++.||.+||.||++.++|...+++++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 81 CSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 356777888899999999999999999999999998764
No 30
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=96.80 E-value=0.0014 Score=54.36 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=37.7
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
|+..+.....+++++||++||.||++.++|...+++++++...
T Consensus 91 s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 133 (143)
T 3cnb_A 91 TGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKA 133 (143)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred eCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Confidence 5667788889999999999999999999999999999876543
No 31
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=96.80 E-value=0.0013 Score=55.26 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=38.3
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
+|+..+.+...+++++||++||.||++.++|..++++++++...
T Consensus 88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~ 131 (147)
T 2zay_A 88 LSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYE 131 (147)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 35677788899999999999999999999999999999877543
No 32
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=96.76 E-value=0.0017 Score=55.27 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=39.4
Q ss_pred CCCCCchHHHHHHHhcC-CceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 1 MSVDGETSRVMKGVQHG-ACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 1 MSA~~d~e~v~kALelG-A~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
+|+..+.+.+.+++++| |++||.||++.++|..+++++++++..
T Consensus 92 ~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~ 136 (153)
T 3hv2_A 92 LTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHS 136 (153)
T ss_dssp ECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHH
Confidence 46778888999999999 999999999999999999999877644
No 33
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=96.75 E-value=0.00067 Score=55.35 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=35.3
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 40 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLR 40 (489)
+|+..+.+...++++.||.+||.||++.++|...++++++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 81 MTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 3667778889999999999999999999999999988764
No 34
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=96.74 E-value=0.0014 Score=56.17 Aligned_cols=44 Identities=16% Similarity=0.306 Sum_probs=38.8
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
+|+..+.+.+.+++++||++||.||++.++|..++++++++...
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 87 LTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 35677888999999999999999999999999999999877543
No 35
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=96.72 E-value=0.0015 Score=54.02 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=38.7
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
+|+..+.+...++++.||++||.||++.++|...+++++++...
T Consensus 88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 131 (140)
T 3cg0_A 88 ITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKL 131 (140)
T ss_dssp EECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcccc
Confidence 35677788889999999999999999999999999999877654
No 36
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=96.72 E-value=0.0012 Score=55.98 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=38.2
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+...+++++||++||.||++.++|..+++++++++.
T Consensus 100 ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 100 VTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred EeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 3667788899999999999999999999999999999887653
No 37
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=96.72 E-value=0.0006 Score=57.67 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=31.8
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
+|+..+.+.+.++++.||.+||.||++.++|...+++++++...
T Consensus 83 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 126 (141)
T 3cu5_A 83 MSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVLQ 126 (141)
T ss_dssp ECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 35666666778899999999999999999999999998876543
No 38
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=96.70 E-value=0.0015 Score=60.88 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=39.0
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+.+.+|+++||++||.||++.++|..+++.++++..
T Consensus 101 lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 143 (250)
T 3r0j_A 101 LTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 143 (250)
T ss_dssp EECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 4677888999999999999999999999999999999987653
No 39
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=96.65 E-value=0.0021 Score=54.54 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=37.8
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+.+.+++++||++||.||++.++|...++++.+...
T Consensus 95 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 137 (152)
T 3heb_A 95 LTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFS 137 (152)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred EecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 3667788889999999999999999999999999999876553
No 40
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=96.64 E-value=0.0018 Score=54.96 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=37.9
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+.+.+++++||++||.||++.++|...++.+++++.
T Consensus 95 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 95 ISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred EEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 3667788889999999999999999999999999999987654
No 41
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=96.63 E-value=0.0015 Score=55.50 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=35.0
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr 41 (489)
+|+..+.+.+.+++++||++||.||++.++|...++.+...
T Consensus 96 ~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 96 LSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 36677888899999999999999999999999999887543
No 42
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=96.62 E-value=0.00057 Score=55.66 Aligned_cols=41 Identities=32% Similarity=0.484 Sum_probs=35.9
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
|+..+.+...++++.||.+||.||++.++|...+++++++.
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 83 TARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred eCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 55667778889999999999999999999999999988654
No 43
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=96.61 E-value=0.0017 Score=53.79 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=36.1
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+...+++++||++||.||++.++|..+++++.+...
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 87 VSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred EeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 3567788889999999999999999999999999998875543
No 44
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=96.61 E-value=0.0011 Score=54.41 Aligned_cols=42 Identities=24% Similarity=0.408 Sum_probs=34.2
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~-~~eEL~~i~q~vLRrr 42 (489)
+|+..+.+...+++++||++||.||+ +.++|...++++++++
T Consensus 85 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 85 ISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 35677888889999999999999999 9999999999988654
No 45
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=96.60 E-value=0.00089 Score=59.56 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=38.5
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|++.+.+.+.+|+++||++||.||++.++|...++.++++..
T Consensus 85 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 85 LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred EeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 4778888999999999999999999999999999998876654
No 46
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=96.58 E-value=0.00096 Score=54.08 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=30.6
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr 41 (489)
|+..+.+...++++.||.+||.||++.++|...+++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 82 TAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp C------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred ECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 5566677788999999999999999999999999887643
No 47
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=96.55 E-value=0.0019 Score=53.91 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=36.9
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 81 LSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred EECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 3566778889999999999999999999999999999987654
No 48
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=96.55 E-value=0.0018 Score=57.76 Aligned_cols=43 Identities=5% Similarity=0.027 Sum_probs=38.3
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|++.+.+.+.+++++||++||.||++.++|...++.++++..
T Consensus 85 lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 127 (196)
T 1qo0_D 85 LVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISE 127 (196)
T ss_dssp EECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHHH
T ss_pred EEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHHH
Confidence 4677888899999999999999999999999999999886643
No 49
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=96.48 E-value=0.0014 Score=53.89 Aligned_cols=42 Identities=17% Similarity=0.104 Sum_probs=31.9
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
|+..+... .+++++||++||.||++.++|..++++++++...
T Consensus 84 s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 84 SGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp ESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred eCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 45555555 7899999999999999999999999999987654
No 50
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=96.48 E-value=0.00087 Score=55.25 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=34.5
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
|+..+.+...++++.||++||.||++.++|...++++++++.
T Consensus 81 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 81 SAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp ECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred eCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 556666778899999999999999999999999999886643
No 51
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=96.47 E-value=0.00058 Score=57.37 Aligned_cols=43 Identities=21% Similarity=0.130 Sum_probs=36.8
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
|+..+.+.+.+++++||++||.||++.++|..++++++++++.
T Consensus 85 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 127 (140)
T 3h5i_A 85 TAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEA 127 (140)
T ss_dssp ESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 4555666677899999999999999999999999999987654
No 52
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=96.47 E-value=0.0028 Score=53.94 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=37.5
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+...++++.||++||.||++.++|...++++++++.
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 81 VTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 3556677888999999999999999999999999999987654
No 53
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=96.46 E-value=0.0015 Score=53.96 Aligned_cols=41 Identities=24% Similarity=0.440 Sum_probs=35.2
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
|+..+......++++||++||.||++.++|..++++++++.
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 82 TAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp ECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred ECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 45556667788999999999999999999999999988654
No 54
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=96.46 E-value=0.0013 Score=54.83 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=35.6
Q ss_pred CCCCchHHHH-HHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 2 SVDGETSRVM-KGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 2 SA~~d~e~v~-kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
|+..+..... .++++||++||.||++.++|..++++++++...
T Consensus 87 s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 87 SANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp CTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred ecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 4555555666 889999999999999999999999999987654
No 55
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=96.45 E-value=0.0015 Score=53.97 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=36.3
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
|+..+.+...+++++||++||.||++.++|..++++++++..
T Consensus 87 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 87 TAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp EEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred ECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 456677888999999999999999999999999999886543
No 56
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=96.44 E-value=0.00081 Score=56.17 Aligned_cols=43 Identities=23% Similarity=0.351 Sum_probs=34.2
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
|+..+.+.+.+++++||++||.||++.++|..+++++++++..
T Consensus 83 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp ECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 4556667778899999999999999999999999999877643
No 57
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=96.43 E-value=0.00049 Score=55.50 Aligned_cols=42 Identities=24% Similarity=0.414 Sum_probs=35.9
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+|+..+.+...++++.||.+||.||++.++|..+++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp BCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 355666677788999999999999999999999999988654
No 58
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=96.36 E-value=0.0031 Score=53.51 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=38.3
Q ss_pred CCCCCchHHHHHHHhcC-CceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 1 MSVDGETSRVMKGVQHG-ACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 1 MSA~~d~e~v~kALelG-A~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
+|+..+.+.+.++++.| |++||.||++.++|...++.+++++..
T Consensus 82 ~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~ 126 (151)
T 3kcn_A 82 LTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDL 126 (151)
T ss_dssp EECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 35667788899999999 999999999999999999999876543
No 59
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=96.35 E-value=0.0031 Score=56.81 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=37.7
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+|+..+.+.+.+++++||++||.||++.++|...++++++..
T Consensus 85 ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (215)
T 1a04_A 85 FSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp EECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred EECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence 467778889999999999999999999999999999988653
No 60
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=96.27 E-value=0.0024 Score=54.23 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=37.1
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
|+..+.+...++++.||++||.||++.++|..+++++++++.
T Consensus 86 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 86 TMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp ESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred ECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 566778889999999999999999999999999999876543
No 61
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=96.25 E-value=0.0025 Score=59.95 Aligned_cols=42 Identities=24% Similarity=0.369 Sum_probs=38.0
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+|+..+.+.+.+|+++||++||.||++.++|..+++.++++.
T Consensus 114 lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 114 LTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred EECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 467888899999999999999999999999999999988654
No 62
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.22 E-value=0.0033 Score=63.75 Aligned_cols=43 Identities=21% Similarity=0.449 Sum_probs=39.3
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
||++.+.+.+.+|+++||++||.||++.++|...+++++++..
T Consensus 78 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 78 ITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp EECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred EeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 5788889999999999999999999999999999999987653
No 63
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=96.20 E-value=0.0019 Score=57.97 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=37.9
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|++.+.+.+.+++++||++||.||++.++|...+++++++..
T Consensus 91 lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 133 (205)
T 1s8n_A 91 LTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205)
T ss_dssp EEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999999999999987653
No 64
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=96.13 E-value=0.0055 Score=52.02 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=37.2
Q ss_pred CCCCCchHHHHHHHhcC-CceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHG-ACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelG-A~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+...++++.| |++||.||++.++|...+++++++..
T Consensus 85 ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 85 ISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp EECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 35666778889999998 99999999999999999999987654
No 65
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=96.13 E-value=0.0049 Score=55.70 Aligned_cols=42 Identities=24% Similarity=0.431 Sum_probs=38.0
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+|+..+.+...+++++||++||.||++.++|...+++++++.
T Consensus 77 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 77 LTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred EEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 467788889999999999999999999999999999998764
No 66
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=96.12 E-value=0.003 Score=53.52 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=34.2
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+...++++.||.+||.||++.++|...+++++++..
T Consensus 84 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 84 ISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp C-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred EeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 4666777888999999999999999999999999999886644
No 67
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=96.09 E-value=0.0055 Score=51.09 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=35.0
Q ss_pred CCCCCchHHHHHHHhc-CCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQH-GACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALel-GA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+|+..+.....+++.. ||.+||.||++.++|..+++++++..
T Consensus 78 ~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 78 ITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp EESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 3566667788888876 59999999999999999999988654
No 68
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=96.07 E-value=0.005 Score=51.20 Aligned_cols=40 Identities=10% Similarity=0.039 Sum_probs=34.3
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr 41 (489)
|+..+.+...+++++||.+||.||++.++|..++.+....
T Consensus 96 s~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 96 TAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp ESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 5566778899999999999999999999999997775544
No 69
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=96.02 E-value=0.0042 Score=50.92 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=31.1
Q ss_pred chHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 6 ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 6 d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+.+.+.+++++||++||.||++.++|..+++++....
T Consensus 90 ~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 90 DKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp CSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred ChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 3347889999999999999999999999999887544
No 70
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=96.02 E-value=0.001 Score=55.39 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=36.1
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
|+..+.+...+++++||++||.||++.++|..++++++++.+.
T Consensus 88 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 88 TAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp ECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 4445555667888999999999999999999999999987654
No 71
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=96.02 E-value=0.0024 Score=57.18 Aligned_cols=42 Identities=17% Similarity=0.408 Sum_probs=36.7
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+|++.+.+.+.+++++||++||.||++.++|...++++++..
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 356667777889999999999999999999999999988764
No 72
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=96.01 E-value=0.0036 Score=56.50 Aligned_cols=43 Identities=30% Similarity=0.479 Sum_probs=38.1
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+.+.+++++||++||.||++.++|..++++++++..
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 3667778889999999999999999999999999999987653
No 73
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=95.97 E-value=0.0065 Score=50.63 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=32.5
Q ss_pred HHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 9 RVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 9 ~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
...++++.||.+||.||++.++|...++++++++.+
T Consensus 95 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (143)
T 2qv0_A 95 HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQ 130 (143)
T ss_dssp THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999877654
No 74
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.90 E-value=0.0052 Score=62.50 Aligned_cols=42 Identities=19% Similarity=0.419 Sum_probs=38.4
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
||++.+.+.+.+|++.||++||.||++.++|..+++++++.+
T Consensus 78 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 78 ITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 477888999999999999999999999999999999988654
No 75
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=95.87 E-value=0.0042 Score=56.28 Aligned_cols=42 Identities=24% Similarity=0.288 Sum_probs=37.6
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~-~~eEL~~i~q~vLRrr 42 (489)
+|+..+.+.+.+++++||++||.||+ +.++|...+++++++.
T Consensus 74 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 74 SSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred EECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 46778889999999999999999999 9999999999987553
No 76
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=95.86 E-value=0.0068 Score=61.47 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=38.1
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
||+..+.+.+.+|+++||.+||.||++.++|..+++.+++..
T Consensus 81 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 81 ITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 477888999999999999999999999999999999988654
No 77
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=95.81 E-value=0.0023 Score=58.56 Aligned_cols=42 Identities=5% Similarity=0.000 Sum_probs=36.7
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+|++.+.+....++++||++||.||+++++|..+++.++++.
T Consensus 89 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 130 (225)
T 3klo_A 89 INCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDE 130 (225)
T ss_dssp EEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred EECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCC
Confidence 356677778889999999999999999999999999988654
No 78
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=95.81 E-value=0.0019 Score=52.76 Aligned_cols=40 Identities=25% Similarity=0.102 Sum_probs=30.7
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
|+..+... .+++..||++||.||++.++|...+++..+..
T Consensus 84 s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 84 SGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp ECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred ECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 44455555 78889999999999999999999999876554
No 79
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=95.64 E-value=0.0033 Score=51.43 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 8 SRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 8 e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+.+.+++.+||++||.||++.++|...++++....
T Consensus 92 ~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 92 ETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp HHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred HHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 66778999999999999999999999999876543
No 80
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=95.62 E-value=0.0076 Score=48.43 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=32.2
Q ss_pred CchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273 5 GETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41 (489)
Q Consensus 5 ~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr 41 (489)
.+.+...++++.||.+||.||++.++|..+++++++.
T Consensus 89 ~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 89 PDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp GGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred CCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 4556778899999999999999999999999988643
No 81
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=95.46 E-value=0.014 Score=56.77 Aligned_cols=40 Identities=28% Similarity=0.210 Sum_probs=36.1
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 40 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLR 40 (489)
+|+..+.+.+.+|+++||.+||.||++.++|..+++.+++
T Consensus 99 ~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 99 LSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 4778888999999999999999999999999999988754
No 82
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=95.36 E-value=0.0055 Score=55.64 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=36.8
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+|+..+.....+++++||++||.||++.++|...+++++++.
T Consensus 81 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 81 VTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp EECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred EeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 356667778899999999999999999999999999988654
No 83
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=95.30 E-value=0.012 Score=58.86 Aligned_cols=42 Identities=26% Similarity=0.495 Sum_probs=34.5
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRKK 42 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~-~~eEL~~i~q~vLRrr 42 (489)
+|++.+.+.+.+|++.||++||.||+ ..++|...+++++++.
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 57888899999999999999999999 6899998888887653
No 84
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=95.29 E-value=0.0038 Score=56.71 Aligned_cols=42 Identities=29% Similarity=0.461 Sum_probs=36.3
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
|+..+.+...+++++||++||.||++.++|...+++++++..
T Consensus 86 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 86 SARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp ECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 556666677889999999999999999999999999987653
No 85
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=95.05 E-value=0.0099 Score=49.60 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=31.2
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
|+..+......+..+||.+||.||++.++|...++++++++
T Consensus 84 s~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 84 TAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp ESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred ECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 44444445555666778999999999999999999887543
No 86
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=95.05 E-value=0.0042 Score=57.02 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=38.6
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
+|+..+.+.+.++++.||++||.||++.++|...++.++++..
T Consensus 81 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 123 (225)
T 3c3w_A 81 LTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 (225)
T ss_dssp GGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCe
Confidence 4677888999999999999999999999999999999987643
No 87
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=94.99 E-value=0.0054 Score=56.53 Aligned_cols=41 Identities=32% Similarity=0.538 Sum_probs=35.3
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
|+..+...+.+++++||++||.||++.++|...++.++++.
T Consensus 83 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 83 TAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp EETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred eCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 55666677889999999999999999999999999887543
No 88
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=93.99 E-value=0.0096 Score=49.96 Aligned_cols=33 Identities=12% Similarity=0.005 Sum_probs=23.0
Q ss_pred CCchHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 011273 4 DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQ 36 (489)
Q Consensus 4 ~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q 36 (489)
..+.+.+.+++++||++||.||++.++|..+++
T Consensus 98 ~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~ 130 (145)
T 3kyj_B 98 VSGSPHAARARELGADGVVAKPSGTVSHDLEEK 130 (145)
T ss_dssp STTSSHHHHHHHTTCSCCCBCCCSCC------C
T ss_pred cCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Confidence 455667889999999999999999777766543
No 89
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=93.71 E-value=0.034 Score=56.12 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=35.3
Q ss_pred CCCCch-----HHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 2 SVDGET-----SRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 2 SA~~d~-----e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
|+..+. ..+.+|+++||.+||.||++.++|...+++++++..
T Consensus 84 s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 84 SEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp CCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred cCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 445554 667889999999999999999999999999887654
No 90
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=93.08 E-value=0.048 Score=44.38 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=31.8
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH 44 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~ 44 (489)
|+..+.+...++++.| +||.||++.++|..+++++++....
T Consensus 86 s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 86 SGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp ESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred eCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 4555666667777666 7999999999999999998876543
No 91
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=92.93 E-value=0.035 Score=44.25 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=25.5
Q ss_pred HHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 011273 11 MKGVQHGACDYLLKPIRMKELRNIWQHVF 39 (489)
Q Consensus 11 ~kALelGA~DYLvKP~~~eEL~~i~q~vL 39 (489)
.++++.||.+||.||++.++|...+++++
T Consensus 87 ~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 87 SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 46778899999999999999999988764
No 92
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=92.07 E-value=0.019 Score=49.99 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=23.8
Q ss_pred HHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 011273 13 GVQHGACDYLLKPIRMKELRNIWQHVFR 40 (489)
Q Consensus 13 ALelGA~DYLvKP~~~eEL~~i~q~vLR 40 (489)
+.++||++||.|||++++|..+++++++
T Consensus 94 ~~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 94 DTRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp CSSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred HHhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 3467999999999999999998877643
No 93
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=91.46 E-value=0.11 Score=43.13 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=24.0
Q ss_pred hcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 15 QHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 15 elGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
.+||++||.||++.++|..+++.+++..
T Consensus 104 ~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 104 GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 6799999999999999999999887543
No 94
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=90.90 E-value=0.038 Score=43.29 Aligned_cols=28 Identities=21% Similarity=0.136 Sum_probs=25.1
Q ss_pred HHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 011273 12 KGVQHGACDYLLKPIRMKELRNIWQHVF 39 (489)
Q Consensus 12 kALelGA~DYLvKP~~~eEL~~i~q~vL 39 (489)
.+++.||.+||.||++.++|...+++++
T Consensus 89 ~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 89 PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 6788999999999999999999887654
No 95
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=90.38 E-value=0.28 Score=46.39 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.2
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCCH
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIRM 28 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~~ 28 (489)
+|++.+.+...+|+++||++||.||+..
T Consensus 80 lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 80 LTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp EECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 5788999999999999999999999743
No 96
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=89.89 E-value=0.067 Score=59.30 Aligned_cols=42 Identities=0% Similarity=-0.112 Sum_probs=36.0
Q ss_pred CCCCc-hHHHHHHHhcCCceEEeCCCCHHH-HHHHHHHHHHhhh
Q 011273 2 SVDGE-TSRVMKGVQHGACDYLLKPIRMKE-LRNIWQHVFRKKI 43 (489)
Q Consensus 2 SA~~d-~e~v~kALelGA~DYLvKP~~~eE-L~~i~q~vLRrr~ 43 (489)
|+.++ .+.+..++..||+|||.||++..+ |..++++++|+..
T Consensus 92 Ta~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~~ 135 (755)
T 2vyc_A 92 GDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_dssp ECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred ecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence 45555 667788999999999999999999 8899999998864
No 97
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=89.21 E-value=0.099 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCceEEeCCCCHHHH
Q 011273 8 SRVMKGVQHGACDYLLKPIRMKEL 31 (489)
Q Consensus 8 e~v~kALelGA~DYLvKP~~~eEL 31 (489)
..+.+++++||++||.||++.++|
T Consensus 113 ~~~~~~~~~ga~~~l~KP~~~~~l 136 (164)
T 3t8y_A 113 AITIEALRNGAVDFITKPHGSISL 136 (164)
T ss_dssp HHHHHHHHTTCCEEEECSSSSSCG
T ss_pred HHHHHHHHcCcCEEEeCCCCHHHH
Confidence 467799999999999999995444
No 98
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=88.89 E-value=0.24 Score=49.78 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCceEEeCCCCH---------HHHHHHHHHHHHhh
Q 011273 8 SRVMKGVQHGACDYLLKPIRM---------KELRNIWQHVFRKK 42 (489)
Q Consensus 8 e~v~kALelGA~DYLvKP~~~---------eEL~~i~q~vLRrr 42 (489)
+...+++++||++||.||++. ++|...++++.+.+
T Consensus 91 ~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~ 134 (349)
T 1a2o_A 91 EVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARAR 134 (349)
T ss_dssp HHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhh
Confidence 458899999999999999984 77777777776543
No 99
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=87.14 E-value=0.29 Score=43.98 Aligned_cols=40 Identities=20% Similarity=0.387 Sum_probs=32.0
Q ss_pred CCCCchHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHHHh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKP--IRMKELRNIWQHVFRK 41 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP--~~~eEL~~i~q~vLRr 41 (489)
+.....+.+.++++.||++||.|| ++..+|...+.+.+..
T Consensus 60 ~~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~~ 101 (237)
T 3cwo_X 60 SAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFGS 101 (237)
T ss_dssp CCSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHTG
T ss_pred ECCCCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhCC
Confidence 344457889999999999999999 7888888887776643
No 100
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=86.72 E-value=0.37 Score=39.59 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=23.5
Q ss_pred CCCCCchHHHHHHHhcCCceEEeCCCC
Q 011273 1 MSVDGETSRVMKGVQHGACDYLLKPIR 27 (489)
Q Consensus 1 MSA~~d~e~v~kALelGA~DYLvKP~~ 27 (489)
+|+..+.+...++++.||++||.||+.
T Consensus 92 ls~~~~~~~~~~~~~~g~~~~l~kP~~ 118 (137)
T 2pln_A 92 SSDNPTSEEEVHAFEQGADDYIAKPYR 118 (137)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCS
T ss_pred EeCCCCHHHHHHHHHcCCceeeeCCCC
Confidence 356777888999999999999999975
No 101
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=86.58 E-value=0.62 Score=38.71 Aligned_cols=57 Identities=26% Similarity=0.268 Sum_probs=36.8
Q ss_pred cceEecchhHHHHHHHHHHHhCC-CCCChH---------------HHHhhcCCCcchHHHHHHhhhhhhhhHh
Q 011273 105 KARVVWSIDLHQKFVKAVNQIGF-DKVGPK---------------KILDLMNVPWLTRENVASHLQKYRLYLT 161 (489)
Q Consensus 105 K~R~~WT~eLH~~Fv~AV~~LG~-~kAtPK---------------rILElM~v~gLT~~~V~SHLQKyR~~~~ 161 (489)
+..-+|.++|...|++|.+.+=. .+.+.+ .|+.+---.--|+.+|.||||--|...+
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~ 76 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS 76 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence 34568999999999999998652 122211 1111111245688999999998666544
No 102
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=84.82 E-value=0.95 Score=45.68 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=35.8
Q ss_pred CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273 2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43 (489)
Q Consensus 2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~ 43 (489)
|+..+.....++++.||.||+.||+..+++..++..+++++.
T Consensus 231 t~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~~ 272 (459)
T 1w25_A 231 VDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKR 272 (459)
T ss_dssp ECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 556677778899999999999999999999999988776543
No 103
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=82.85 E-value=1.7 Score=37.83 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=32.8
Q ss_pred chHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273 6 ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42 (489)
Q Consensus 6 d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr 42 (489)
+++.+.+-+..||. ||+.|+.+.-|.+.|++.+|..
T Consensus 84 ~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 84 DEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp CHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 57889999999999 9999999999999999998753
No 104
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.84 E-value=1.2 Score=35.10 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=40.0
Q ss_pred cceEecchhHHHHHHHHHHHhCCCCCCh---HHHHhhcCCCcchHHHHHHhhhhhhh
Q 011273 105 KARVVWSIDLHQKFVKAVNQIGFDKVGP---KKILDLMNVPWLTRENVASHLQKYRL 158 (489)
Q Consensus 105 K~R~~WT~eLH~~Fv~AV~~LG~~kAtP---KrILElM~v~gLT~~~V~SHLQKyR~ 158 (489)
..+-.||.|=+.+|+++|+..|.+...+ ..|-++| +|-|..+|+.|-|+|-.
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~ 60 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL--GNRTAKQVASQVQKYFI 60 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3455799999999999999999654334 3455554 68999999999988754
No 105
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=78.38 E-value=3.8 Score=32.13 Aligned_cols=50 Identities=24% Similarity=0.275 Sum_probs=39.6
Q ss_pred cccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhhh
Q 011273 103 TKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYR 157 (489)
Q Consensus 103 ~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKyR 157 (489)
....+-.||.|=+..|+++|+.+|- .=..|-.+| +|-|..+|+.|-++|-
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~---~W~~Ia~~~--~~Rt~~q~k~r~~~~l 54 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR---RWTKISKLI--GSRTVLQVKSYARQYF 54 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS---CHHHHHHHH--SSSCHHHHHHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc---CHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 3445678999999999999999995 345566654 7899999999988763
No 106
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=76.95 E-value=3.7 Score=33.28 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=38.8
Q ss_pred ccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhh
Q 011273 104 KKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKY 156 (489)
Q Consensus 104 kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKy 156 (489)
...+-.||.+=+.+|++||+..| -.=++|-++|. +-|..+++.|-++|
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G---~~W~~IA~~v~--~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYK---DDWNKVSEHVG--SRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSS---SCHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhC---CCHHHHHHHcC--CCCHHHHHHHHHHh
Confidence 33456799999999999999999 23567777764 78999999998876
No 107
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=74.00 E-value=1.1 Score=36.79 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.2
Q ss_pred CceEEeCCCCHHHHHHHHHHHHHh
Q 011273 18 ACDYLLKPIRMKELRNIWQHVFRK 41 (489)
Q Consensus 18 A~DYLvKP~~~eEL~~i~q~vLRr 41 (489)
|++||.||++.++|..++++++++
T Consensus 108 ~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 108 NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred HHheeeCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999887644
No 108
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=66.80 E-value=4.2 Score=32.53 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=34.2
Q ss_pred eEecchhHHHHHHHHHHHhCCCCCChHH---HHhhcCCCcchHHHHHHhhhh
Q 011273 107 RVVWSIDLHQKFVKAVNQIGFDKVGPKK---ILDLMNVPWLTRENVASHLQK 155 (489)
Q Consensus 107 R~~WT~eLH~~Fv~AV~~LG~~kAtPKr---ILElM~v~gLT~~~V~SHLQK 155 (489)
+-.||.|=+.+|+.|+...+ +-||.| |-++| |-|-++|+.|-++
T Consensus 8 ~~~WT~eE~k~fe~al~~~p--~~t~~RW~~IA~~l---gRt~~eV~~~y~~ 54 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFP--GGTPGRWEKIAHEL---GRSVTDVTTKAKQ 54 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSC--TTCTTHHHHHHHHH---TSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC--CCCCcHHHHHHHHh---CCCHHHHHHHHHH
Confidence 44799999999999999998 346765 44454 6899999988655
No 109
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=63.40 E-value=13 Score=28.13 Aligned_cols=49 Identities=22% Similarity=0.362 Sum_probs=37.3
Q ss_pred ccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhh
Q 011273 104 KKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKY 156 (489)
Q Consensus 104 kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKy 156 (489)
.-.|-.||.|=..++++||+..|.. .=+.|-++| +|-|..+++.|-++|
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFG--NWQDVANQM--CTKTKEECEKHYMKY 53 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTT--CHHHHHHHH--TTSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcC--cHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3445679999899999999999953 235566666 678889998887665
No 110
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=57.48 E-value=29 Score=27.69 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=37.8
Q ss_pred eEecchhHHHHHHHHHHHhCCCCCChHHHHhhcC-CCcchHHHHHHhhhhh
Q 011273 107 RVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMN-VPWLTRENVASHLQKY 156 (489)
Q Consensus 107 R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~-v~gLT~~~V~SHLQKy 156 (489)
+-.||.+=..+|++|+..+|. -+|.+--.+-. ++|-|..+|+.|-+.+
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~--~~~~rW~~IA~~vpGRT~~qcr~Ry~~L 66 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPR--GSSDCWDKIARCVPSKSKEDCIARYKLL 66 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCS--SSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 346999999999999999994 37877655433 4799999999996654
No 111
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=51.78 E-value=15 Score=39.26 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=42.2
Q ss_pred ccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhhhhhH
Q 011273 104 KKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYL 160 (489)
Q Consensus 104 kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~~ 160 (489)
.|...+||.+=|..|++|+..-|= .=++|-+.++. -|..+|++|-++||..+
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk---dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR---DFQAISDVIGN--KSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT---CHHHHHHHHSS--CCHHHHHHHHHHTTTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc---CHHHHHHHhCC--CCHHHHHHHHHHHHHHh
Confidence 355789999999999999999992 35667777654 48999999999998743
No 112
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=49.64 E-value=17 Score=35.52 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=44.5
Q ss_pred CCccccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhhhhh
Q 011273 100 ASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLY 159 (489)
Q Consensus 100 ~~t~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~ 159 (489)
+.+..|..-.||.+=+..|++|+...|=+ =..|-++ +.+-|..+|++|-.+||..
T Consensus 126 pe~~~k~s~~WTeEE~~lFleAl~kYGKD---W~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 126 PEVIQKCNARWTTEEQLLAVQAIRKYGRD---FQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHHSSC---HHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 34556778899999999999999999932 4556555 5788999999999998864
No 113
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=45.11 E-value=42 Score=25.86 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=37.9
Q ss_pred ccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhhhhhHh
Q 011273 104 KKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLT 161 (489)
Q Consensus 104 kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~~~ 161 (489)
.+.|-.||.|=.++..++|+..|.. .=+.|.+.+...|-|-.+++- +||.+++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~---Rw~nl~k 60 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEG--NWAAISKNYPFVNRTAVMIKD---RWRTMKR 60 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTT--CHHHHHHHSCCSSCCHHHHHH---HHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCC--chHHHHhhcCCCCCCHHHHHH---HHHHHhc
Confidence 3446679999889999999999943 246777777667778777763 4665543
No 114
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.21 E-value=84 Score=24.41 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=46.8
Q ss_pred CccccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhhhhhHhhhhh
Q 011273 101 SSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQK 165 (489)
Q Consensus 101 ~t~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~~~~~~~ 165 (489)
...++.|..||.+ +...++.+.... ...++..+.++...-|||..+|+-=.|.-|...++...
T Consensus 5 ~~~rr~Rt~ft~~-Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHH-QLRTMKSYFAIN-HNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHH-HHHHHHHHHHHC-SSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHH-HHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 4567889999988 444455554444 45677778888889999999999999988877666443
No 115
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=35.40 E-value=41 Score=28.06 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=36.8
Q ss_pred eEecchhHHHHHHHHHHHhCCCCCChHHHHhhc-CCCcchHHHHHHhhhhhh
Q 011273 107 RVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLM-NVPWLTRENVASHLQKYR 157 (489)
Q Consensus 107 R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM-~v~gLT~~~V~SHLQKyR 157 (489)
+-.||.+=...|++|+..+|.+ +|.|--.+- -++|-|.++|+.|-+++.
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~--~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKD--TPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3469999899999999999854 665543322 237999999999976654
No 116
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=34.83 E-value=9.2 Score=31.19 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=35.3
Q ss_pred EecchhHHHHHHHHHHHhCCCCCChHHHHhhcC-CCcchHHHHHHhhh
Q 011273 108 VVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMN-VPWLTRENVASHLQ 154 (489)
Q Consensus 108 ~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~-v~gLT~~~V~SHLQ 154 (489)
-.||.+=...|+.|+.... +.||.|--.+-. |+|-|.++|+.|-|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp--~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTN--KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSC--SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCC--CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4699999999999987764 678877655433 57999999999865
No 117
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=33.61 E-value=90 Score=23.23 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=34.6
Q ss_pred eEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhh
Q 011273 107 RVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKY 156 (489)
Q Consensus 107 R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKy 156 (489)
+-.||.+=..++++||+..|.. .=+.|-++|.. |-|..+++.|-++|
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~--~W~~IA~~~~~-~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLG--NWADIADYVGN-ARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTT--CHHHHHHHHCS-SCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcC--CHHHHHHHHCC-CCCHHHHHHHHHHH
Confidence 4469999999999999999942 23455555531 67888888887765
No 118
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=33.34 E-value=48 Score=25.73 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=44.1
Q ss_pred CCccccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhhhhhHhh
Q 011273 100 ASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTR 162 (489)
Q Consensus 100 ~~t~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~~~~ 162 (489)
+...++.|..||.+ +...++.+.... ...++..+.++...-|||..+|+-=.|.-|...++
T Consensus 14 ~~~~rr~Rt~ft~~-Ql~~Le~~f~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 74 (80)
T 2da3_A 14 PQRDKRLRTTITPE-QLEILYQKYLLD-SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK 74 (80)
T ss_dssp CCCCTTCCSSCCTT-THHHHHHHHHHC-SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHH-HHHHHHHHHHhc-CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhh
Confidence 34567778888887 344444444444 45667777888888899999999999988876655
No 119
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=28.87 E-value=1e+02 Score=22.71 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=34.7
Q ss_pred cccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhh
Q 011273 103 TKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQK 155 (489)
Q Consensus 103 ~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQK 155 (489)
....|-.||.|=..++.++|++.|.. .=..|-++| +|-|-.+++.|-.+
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~Rw~~ 52 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQQ--DWKFLASHF--PNRTDQQCQYRWLR 52 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCTT--CHHHHHHHC--SSSCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHc--cCCCHHHHHHHHHH
Confidence 34556789999889999999999942 234555554 57777787766444
No 120
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=28.77 E-value=94 Score=22.24 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=33.5
Q ss_pred eEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhh
Q 011273 107 RVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQK 155 (489)
Q Consensus 107 R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQK 155 (489)
|-.||.|=..++.++|+..|. ..=..|-++| +|-|..+++.|-++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~--~~W~~Ia~~~--~~Rt~~qcr~Rw~~ 47 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT--DDWKVIANYL--PNRTDVQCQHRWQK 47 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS--SCHHHHHHTS--TTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC--CCHHHHHHHc--CCCCHHHHHHHHHH
Confidence 457999988999999999994 2345666665 57788888776444
No 121
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.41 E-value=95 Score=24.19 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=45.8
Q ss_pred CccccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhhhhhHhhhhh
Q 011273 101 SSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQK 165 (489)
Q Consensus 101 ~t~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~~~~~~~ 165 (489)
...++.|..||.+ ....++.+.... ...++..+.++...-|||..+|+.=.|.-|...++..+
T Consensus 5 ~~~rr~Rt~ft~~-Q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRA-QLDVLEALFAKT-RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHH-HHHHHHHHHHHC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHH-HHHHHHHHHHcc-CCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 3567888899988 334444444444 35667777888888999999999999988877666443
No 122
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=28.31 E-value=1e+02 Score=23.42 Aligned_cols=61 Identities=21% Similarity=0.176 Sum_probs=43.8
Q ss_pred CccccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhhhhhHhhh
Q 011273 101 SSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRL 163 (489)
Q Consensus 101 ~t~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~~~~~ 163 (489)
+..++.|.++|.+ +...++.+.... ...++..+.++...-|||..+|+-=.|.-|...++.
T Consensus 5 ~~~~r~R~~ft~~-q~~~Le~~F~~~-~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 5 SSGKGGQVRFSND-QTIELEKKFETQ-KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCCCCCHH-HHHHHHHHHHHC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHH-HHHHHHHHHHcC-CCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 3567788999998 333444444444 356677778888889999999999988877765553
No 123
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=26.72 E-value=59 Score=26.14 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=35.3
Q ss_pred ecchhHHHHHHHHHHHhCCCCCChHHHHhhc-CCCcchHHHHHHhhhh
Q 011273 109 VWSIDLHQKFVKAVNQIGFDKVGPKKILDLM-NVPWLTRENVASHLQK 155 (489)
Q Consensus 109 ~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM-~v~gLT~~~V~SHLQK 155 (489)
.||.+=..+|.+|+...+ +.||.|--.+- -|+|-|.++|..|-+.
T Consensus 10 ~WT~eE~k~fe~ALa~~~--~~tp~rWe~IA~~V~gKT~eE~~~hY~~ 55 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP--KHKPGFWSEVAAAVGSRSPEECQRKYME 55 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC--SSSSSHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC--CCCccHHHHHHHHcCCCCHHHHHHHHHH
Confidence 499999999999999887 45887765443 4578999999877554
No 124
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=23.96 E-value=1.5e+02 Score=22.49 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=41.3
Q ss_pred ccccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhhhhhHhh
Q 011273 102 STKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTR 162 (489)
Q Consensus 102 t~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~~~~ 162 (489)
..++.|-.||.|=....+++|+..|.. .=..|.+.|...|-|-.+++-+ |+.+++.
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~R---w~~~l~p 60 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKDR---WRTMKKL 60 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSS--CHHHHHHHSCCSSCCHHHHHHH---HHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCC--cHHHHHHHcCcCCCCHHHHHHH---HHHHcCC
Confidence 456778899999888889999999942 3467777876447788887754 6655543
No 125
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.96 E-value=49 Score=25.31 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=29.9
Q ss_pred ccccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHH
Q 011273 102 STKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVA 150 (489)
Q Consensus 102 t~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~ 150 (489)
.....+-.||.+=|..|++|+..-|=+ =.+|-..| ++.-|..+|.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKd---f~~I~~~~-v~~Kt~~~~v 48 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKN---FFRIRKEL-LPNKETGELI 48 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSC---HHHHHHHS-CTTSCHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCcc---HHHHHHHH-cCCCcHHHHH
Confidence 344556789999999999999999933 23443311 3455666654
No 126
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=22.50 E-value=1.4e+02 Score=21.40 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=32.9
Q ss_pred eEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhh
Q 011273 107 RVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKY 156 (489)
Q Consensus 107 R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKy 156 (489)
|-.||.|=..++.++|+..|.. .=..|-+.| +|-|..+++.|-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPK--RWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTT--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC--hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 4579999889999999999931 234555554 577888887765443
No 127
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=21.50 E-value=1.3e+02 Score=23.70 Aligned_cols=60 Identities=12% Similarity=0.204 Sum_probs=45.1
Q ss_pred ccccceEecchhHHHHHHHHHHHhC--CCCCChHHHHhhcCCCcchHHHHHHhhhhhhhhHh
Q 011273 102 STKKARVVWSIDLHQKFVKAVNQIG--FDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLT 161 (489)
Q Consensus 102 t~kK~R~~WT~eLH~~Fv~AV~~LG--~~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~~~ 161 (489)
..++.|..+|.+--.....+.+.+| -...++....++...-||+..+|+-=.|.-|...+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~ 77 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGP 77 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSS
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCC
Confidence 4567788899984444566666677 55677788888899999999999988887665443
No 128
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.33 E-value=1.7e+02 Score=22.24 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=34.4
Q ss_pred cccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhh
Q 011273 103 TKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQK 155 (489)
Q Consensus 103 ~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQK 155 (489)
....|-.||.|=.+++.++|+..|.. .=..|-++|. |-|..+++-|-..
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~l~--~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGKN--QWSRIASLLH--RKSAKQCKARWYE 53 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCSS--CHHHHHHHST--TCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcC--CHHHHHHHhc--CCCHHHHHHHHHH
Confidence 34456789999888999999999932 2356666664 6777777655433
No 129
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.66 E-value=1.4e+02 Score=22.54 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=43.2
Q ss_pred CccccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhhhhhHhhh
Q 011273 101 SSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRL 163 (489)
Q Consensus 101 ~t~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~~~~~ 163 (489)
...++.|..||.+ ....++.+.... ...++..+.++...-|||..+|+-=.|.-|...++.
T Consensus 5 ~~~rr~Rt~ft~~-q~~~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 5 SSGRRHRTIFTDE-QLEALENLFQET-KYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp TSSCCCCCCCCHH-HHHHHHHHHHHC-SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHH-HHHHHHHHHHcc-CCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 4567888999998 333344444443 355667777888888999999999988877766553
No 130
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.32 E-value=72 Score=24.06 Aligned_cols=45 Identities=11% Similarity=0.036 Sum_probs=33.1
Q ss_pred cccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHh
Q 011273 103 TKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASH 152 (489)
Q Consensus 103 ~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SH 152 (489)
.++..-.||.+=|..|++++...| . -=.+|-++ +++-|..+|..|
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g-k--~w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP-K--NFGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST-T--CHHHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC-C--CHHHHHHH--cCCCCHHHHHHH
Confidence 346678899999999999999999 2 23555544 357777777644
No 131
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=20.28 E-value=1.3e+02 Score=23.87 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=42.6
Q ss_pred CccccceEecchhHHHHHHHHHHH-hC--CCCCChHHHHhhcCCCcchHHHHHHhhhhhhhhHh
Q 011273 101 SSTKKARVVWSIDLHQKFVKAVNQ-IG--FDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLT 161 (489)
Q Consensus 101 ~t~kK~R~~WT~eLH~~Fv~AV~~-LG--~~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~~~ 161 (489)
...++.|-.+|.+- ..-+++... +| -...++....++...-||+..+|+-=.|.-|...+
T Consensus 15 ~~~rR~Rt~ft~~Q-l~~Le~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~ 77 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQ-KEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp CCSSCCCCCCCHHH-HHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSC
T ss_pred CCCCCCCccCCHHH-HHHHHHHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCC
Confidence 34577788899883 233335554 66 55667777888899999999999988887665443
Done!