BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011274
         (489 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C0Z6Q2|HPRK_BREBN HPr kinase/phosphorylase OS=Brevibacillus brevis (strain 47 / JCM
           6285 / NBRC 100599) GN=hprK PE=3 SV=1
          Length = 311

 Score = 33.5 bits (75), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 218 TVAGVAAAVAAIAAATAASSGSGKDEHMAKTDMAVASAATLVAAQCVETAEAMGAEREHL 277
           T+ GV   +  +      SSG GK E  A  ++ V     LVA   VE  +  G +    
Sbjct: 136 TIHGVLTDIYGVGVLIMGSSGIGKSE--AALEL-VKRGHRLVADDAVEIKQTQGGQLSGS 192

Query: 278 A-AVVSSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVW 319
           A  ++   + +R  G I  +T   A A+R    ++     E+W
Sbjct: 193 APELIQHLLEIRGVGIINIMTMFGAGAVRNVKNIEMVVQLELW 235


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.128    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,897,542
Number of Sequences: 539616
Number of extensions: 7925665
Number of successful extensions: 62650
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 216
Number of HSP's that attempted gapping in prelim test: 59178
Number of HSP's gapped (non-prelim): 3103
length of query: 489
length of database: 191,569,459
effective HSP length: 122
effective length of query: 367
effective length of database: 125,736,307
effective search space: 46145224669
effective search space used: 46145224669
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)