Query 011274
Match_columns 489
No_of_seqs 88 out of 90
Neff 3.0
Searched_HMMs 46136
Date Thu Mar 28 23:32:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05703 Auxin_canalis: Auxin 100.0 2.2E-88 4.8E-93 650.9 16.0 241 21-330 1-242 (242)
2 PF08458 PH_2: Plant pleckstri 100.0 2.6E-53 5.7E-58 368.9 12.2 110 374-484 1-110 (110)
3 PF12814 Mcp5_PH: Meiotic cell 97.2 0.0044 9.6E-08 54.5 11.1 107 367-478 6-122 (123)
4 smart00233 PH Pleckstrin homol 96.2 0.035 7.6E-07 41.7 8.0 99 372-477 3-101 (102)
5 PF00169 PH: PH domain; Inter 95.7 0.14 3E-06 39.7 9.6 95 372-477 3-103 (104)
6 cd00821 PH Pleckstrin homology 94.7 0.26 5.6E-06 36.8 7.9 34 442-475 62-95 (96)
7 cd01250 PH_centaurin Centaurin 93.6 0.54 1.2E-05 37.2 8.2 93 372-475 1-93 (94)
8 cd01220 PH_CDEP Chondrocyte-de 91.5 1.8 3.8E-05 37.3 9.1 91 372-477 4-97 (99)
9 cd01219 PH_FGD FGD (faciogenit 90.6 2.1 4.5E-05 36.3 8.7 94 372-477 4-99 (101)
10 cd00900 PH-like Pleckstrin hom 89.8 3.9 8.5E-05 30.7 8.8 34 442-475 63-98 (99)
11 cd01265 PH_PARIS-1 PARIS-1 ple 84.5 7.3 0.00016 32.7 8.3 33 443-476 61-93 (95)
12 cd01235 PH_SETbf Set binding f 84.3 9.4 0.0002 31.1 8.7 35 441-476 66-100 (101)
13 cd01249 PH_oligophrenin Oligop 84.2 7.9 0.00017 34.6 8.7 93 373-474 2-102 (104)
14 cd01254 PH_PLD Phospholipase D 80.8 2.2 4.9E-05 37.5 4.0 34 441-475 87-120 (121)
15 cd01233 Unc104 Unc-104 pleckst 80.7 12 0.00025 31.7 8.1 93 372-476 4-97 (100)
16 cd01248 PH_PLC Phospholipase C 79.6 16 0.00034 31.5 8.7 101 367-476 3-115 (115)
17 cd01261 PH_SOS Son of Sevenles 79.0 15 0.00033 32.8 8.7 35 443-477 75-109 (112)
18 cd01251 PH_centaurin_alpha Cen 76.8 23 0.00049 30.3 8.8 33 445-478 69-101 (103)
19 cd01246 PH_oxysterol_bp Oxyste 75.8 23 0.0005 27.8 8.0 88 374-475 3-90 (91)
20 cd01230 PH_EFA6 EFA6 Pleckstri 73.3 22 0.00047 31.9 8.1 37 441-477 75-111 (117)
21 PTZ00283 serine/threonine prot 72.8 8.2 0.00018 40.8 6.2 98 374-479 377-491 (496)
22 cd01260 PH_CNK Connector enhan 72.1 34 0.00073 28.1 8.4 33 442-474 62-94 (96)
23 PLN02958 diacylglycerol kinase 72.1 7.2 0.00016 42.0 5.7 85 376-480 23-108 (481)
24 cd01252 PH_cytohesin Cytohesin 66.5 62 0.0013 28.1 9.3 25 454-478 90-114 (125)
25 cd01247 PH_GPBP Goodpasture an 66.5 8.9 0.00019 32.3 4.0 34 442-475 57-90 (91)
26 PF15410 PH_9: Pleckstrin homo 64.0 16 0.00036 31.9 5.3 92 378-475 17-116 (119)
27 cd01253 PH_beta_spectrin Beta- 63.4 55 0.0012 27.2 8.1 33 443-475 71-103 (104)
28 cd01257 PH_IRS Insulin recepto 62.6 11 0.00023 32.9 3.9 34 442-476 68-101 (101)
29 cd01238 PH_Tec Tec pleckstrin 61.3 79 0.0017 27.1 8.9 33 442-475 73-105 (106)
30 cd01222 PH_clg Clg (common-sit 59.0 17 0.00037 31.7 4.5 36 442-477 58-95 (97)
31 cd01245 PH_RasGAP_CG5898 RAS G 55.5 87 0.0019 27.4 8.2 90 374-475 3-97 (98)
32 cd01264 PH_melted Melted pleck 55.2 22 0.00048 31.3 4.6 32 443-475 68-99 (101)
33 cd01232 PH_TRIO Trio pleckstri 54.8 1.1E+02 0.0024 27.5 8.9 37 442-478 73-113 (114)
34 cd01218 PH_phafin2 Phafin2 Pl 52.1 1.1E+02 0.0025 26.9 8.5 35 443-478 65-99 (104)
35 cd01244 PH_RasGAP_CG9209 RAS_G 50.5 1.3E+02 0.0029 26.1 8.6 31 444-475 67-97 (98)
36 PTZ00267 NIMA-related protein 43.3 79 0.0017 33.1 7.2 96 371-477 378-476 (478)
37 PF15413 PH_11: Pleckstrin hom 42.4 40 0.00088 29.3 4.2 34 441-475 78-111 (112)
38 cd01266 PH_Gab Gab (Grb2-assoc 37.8 43 0.00093 28.5 3.6 31 445-476 77-107 (108)
39 cd01224 PH_Collybistin Collybi 37.2 2.3E+02 0.0049 25.8 8.1 94 373-474 5-104 (109)
40 cd01227 PH_Dbs Dbs (DBL's big 29.7 2.9E+02 0.0064 25.6 7.8 39 442-480 79-119 (133)
41 cd01236 PH_outspread Outspread 29.3 84 0.0018 27.6 4.1 32 442-474 70-101 (104)
42 PF15409 PH_8: Pleckstrin homo 28.1 87 0.0019 27.3 3.9 34 441-475 54-87 (89)
43 COG3672 Predicted transglutami 27.9 2.2E+02 0.0047 28.4 7.0 31 290-329 60-90 (191)
44 cd01221 PH_ephexin Ephexin Ple 27.4 2.6E+02 0.0057 25.8 7.0 20 455-474 100-119 (125)
No 1
>PF05703 Auxin_canalis: Auxin canalisation; InterPro: IPR008546 This domain consists of several plant proteins of unknown function.
Probab=100.00 E-value=2.2e-88 Score=650.92 Aligned_cols=241 Identities=70% Similarity=0.927 Sum_probs=213.0
Q ss_pred CCCCCCccccccccccchhhhhhhhcCCCCCccccCCCCCccchhhhhhhhhccCCCcCCCCccccccchhhHHHHHHhh
Q 011274 21 PETPREPMEFLSRSWSVSAVEVSKALAPQHPQLILSKTPSSVIQEDLAAELEDQNGAVSGNPFSFACSETSQMIMERIMS 100 (489)
Q Consensus 21 PetP~epMEFLsRSWS~SA~evSkaL~~~~~~~~~~~~~~~~~~~~~~~e~~e~~~~~~~~~f~fas~~tsq~vm~rim~ 100 (489)
||||+|||||||||||+||+||||+|.+.+.. ....+.+++..+...+ ....+++|+|++..++||||+|||+
T Consensus 1 PETP~EPMEFLSRSWSvSAsEVSKAL~~~s~~------~~ss~~~~~~~~~~~~-~~~~~~~~s~~~~~t~~lv~~~~~~ 73 (242)
T PF05703_consen 1 PETPREPMEFLSRSWSVSASEVSKALSPPSNR------SISSFIDPEDAESDND-KDRFGSSFSFASSATSQLVMDRIMS 73 (242)
T ss_pred CCCCcccHHHHHHhhhhhHHHHhhhcCCcccc------cccccccccchhcccc-ccccCCCCCcccccCcccccccccc
Confidence 89999999999999999999999999884322 1122223333333222 3346889999999999999999999
Q ss_pred hcccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccchhh-hhhccCCCCCccccCCCcccccccCCccccccccccc
Q 011274 101 QSQQDVSPRTSGRLSHSSGPLNGGGSLTDSPPVSPSEIDDVK-FCRNNNNNSSANNIHGGYHHHQLNTGSTFRTPAAAAS 179 (489)
Q Consensus 101 ~s~~evsp~tsgrlshssgpl~gggs~t~spPisp~~~dd~~-~~r~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~ 179 (489)
|+ ..+++|||+|++++|.+ ++|.+
T Consensus 74 ~~-----------------------~~~~spp~sp~~~~~~~~~~~~~-------------------------------- 98 (242)
T PF05703_consen 74 QS-----------------------SGADSPPISPRDLDDSKKIIRAN-------------------------------- 98 (242)
T ss_pred cc-----------------------cccCCCCcchhhHHHHHHHHHhc--------------------------------
Confidence 96 14899999999888854 32222
Q ss_pred cCcccccCCcchhhhhhhHHHHhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhhHHhhHHHHH
Q 011274 180 ATPVAAAGGKTVGRWLKDRREKKKEEARVHNAQLHAAITVAGVAAAVAAIAAATAASSGSGKDEHMAKTDMAVASAATLV 259 (489)
Q Consensus 180 ~~~~~~~~~~tvgrWlKd~keKKKEE~R~~nAqvHAAVSVAgVAAAVAAvAAata~ss~~~~d~~~ak~~~AvASAAaLV 259 (489)
+++||||||||+|+|||||+|+||||||||||||+||||||||+++++.+++++++++++||++||||||+||
T Consensus 99 -------~~~~i~~w~~~~~~kkkee~R~~~A~vhaAvSVA~vAaavAavaa~~~~~~~~~~~~~~~k~~~avASAa~Lv 171 (242)
T PF05703_consen 99 -------GGKTIGRWLKDRKEKKKEEARAHNAQVHAAVSVAGVAAAVAAVAAATAASSSSGKDESSSKMDAAVASAAALV 171 (242)
T ss_pred -------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCccchhHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHHcCCChhhHHHHHHhhhcccCCCchhhhhhHHHhhcchhhHHHHHhhhhhhhcceecccccC
Q 011274 260 AAQCVETAEAMGAEREHLAAVVSSAVNVRSAGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVEKG 330 (489)
Q Consensus 260 AaqCvE~AE~~GA~rd~vaSaV~SAV~vrspgDimTLTAaAATALRGAAtLKaR~~ke~~n~AaV~P~ek~ 330 (489)
|+||||+||.|||+||||+++|+||||+|||||||||||+|||||||+||||+|++||+||+|+||||||+
T Consensus 172 Aa~C~e~Ae~~GA~~~~v~s~v~sav~~~s~gdi~TLTAaAATaLRGaa~Lk~R~~ke~~~~a~v~P~e~~ 242 (242)
T PF05703_consen 172 AAQCAEAAEAAGADRDQVASAVRSAVNVRSPGDIMTLTAAAATALRGAATLKARAQKEARSNAAVLPYEKG 242 (242)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHhcCCCchHHHHHHHHHHhcCchHHHHHHHHhhhhhcccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=100.00 E-value=2.6e-53 Score=368.88 Aligned_cols=110 Identities=67% Similarity=1.136 Sum_probs=107.9
Q ss_pred cceeeeccCCceeeEEEEEEEcCccEEEEEeeccccccccccccccEEEeeccCCCCCCCcccccCCCcceeeeeeeccc
Q 011274 374 CELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTVLR 453 (489)
Q Consensus 374 ~eLlkrTrkG~lhwk~VSVyink~~qV~LKmKSkHv~GaftKKKK~VV~~V~~d~paWpgr~~~e~~e~r~YFglkTa~~ 453 (489)
||||||||||+||||+||||||+++|||||||||||+|||||||||||+|||+|+||||||++.|++|+++||||+|++
T Consensus 1 ~eLlk~tr~G~l~~k~Vsvyink~~qVilKmKskhv~Gafskkkk~VV~~V~~~~~awpgr~~~e~~~~~~yfgL~T~~- 79 (110)
T PF08458_consen 1 GELLKRTRKGDLHWKTVSVYINKKGQVILKMKSKHVGGAFSKKKKSVVLDVCSEIPAWPGRELREDGEERRYFGLKTAQ- 79 (110)
T ss_pred CcceEecCCCceEEEEEEEEECCCcEEEEEeecchhhhhhhcCCceEEEEEccCcccCCCcccccCCceEEEEEEEecC-
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ceEEEEeCCcchhhhHHHHHHHHHHHHHhhh
Q 011274 454 GVVEFECRSQREYDIWTQGVARLLNVAAERS 484 (489)
Q Consensus 454 GvvEFeC~sq~~~q~W~~gI~~LL~~~~~~~ 484 (489)
|+|||||+||+|||+|++||++||+++++|+
T Consensus 80 G~vEfec~~~~~~k~W~~gI~~mL~~~~~~~ 110 (110)
T PF08458_consen 80 GVVEFECDSQREYKRWVQGIQHMLSQVAEKK 110 (110)
T ss_pred cEEEEEeCChhhHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999875
No 3
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.23 E-value=0.0044 Score=54.53 Aligned_cols=107 Identities=22% Similarity=0.236 Sum_probs=65.3
Q ss_pred HHHHhhccceeeeccCC------ceeeEEEEEEEcCccEEEEEeeccccccccccccccE----EEeeccCCCCCCCccc
Q 011274 367 RELLARGCELLKRTRKG------DLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNV----VLEVIPDMPAWPGRHL 436 (489)
Q Consensus 367 ~e~larG~eLlkrTrkG------~lhwk~VSVyink~~qV~LKmKSkHv~GaftKKKK~V----V~~V~~d~paWpgr~~ 436 (489)
.+.+..|..|+|.+|+| .-|.|-+=|=.+. ..++=.=+.+-....-..+.++| |..|.++-|.=+|.+
T Consensus 6 i~~~~~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~-~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~- 83 (123)
T PF12814_consen 6 ITQLMIGEWLYKYTRKGRSGISEKPHRRYFWVDPYT-RTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLK- 83 (123)
T ss_pred HHHhhcccEEEEEcccccCccCCCcEEEEEEEeCCC-CEEEecCCCCCccccccccccceEEeeeEEecCCCCCCcccc-
Confidence 45678899999999999 6666655433332 23222221111223333333443 344444433222221
Q ss_pred ccCCCcceeeeeeecccceEEEEeCCcchhhhHHHHHHHHHH
Q 011274 437 LEGGEDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLLN 478 (489)
Q Consensus 437 ~e~~e~r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~LL~ 478 (489)
..+...-|.|.|.+ +.|.|.|.+..++++|.++++.||.
T Consensus 84 --~~~~~~si~i~t~~-R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 84 --KPDHNKSIIIVTPD-RSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred --ccccceEEEEEcCC-eEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 11245566778887 7999999999999999999999984
No 4
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=96.22 E-value=0.035 Score=41.74 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=59.9
Q ss_pred hccceeeeccCCceeeEEEEEEEcCccEEEEEeeccccccccccccccEEEeeccCCCCCCCcccccCCCcceeeeeeec
Q 011274 372 RGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTV 451 (489)
Q Consensus 372 rG~eLlkrTrkG~lhwk~VSVyink~~qV~LKmKSkHv~GaftKKKK~VV~~V~~d~paWpgr~~~e~~e~r~YFglkTa 451 (489)
+.|.|+++.+.+...|+.+-+.+.. .++.--+.++-..-.......-+.++.-... +. .+......+|-|.+.
T Consensus 3 ~~G~l~~~~~~~~~~~~~~~~~L~~--~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~--~~---~~~~~~~~~f~l~~~ 75 (102)
T smart00233 3 KEGWLYKKSGGKKKSWKKRYFVLFN--STLLYYKSEKAKKDYKPKGSIDLSGITVREA--PD---PDSAKKPHCFEIKTA 75 (102)
T ss_pred eeEEEEEeCCCccCCceEEEEEEEC--CEEEEEeCCCccccCCCceEEECCcCEEEeC--CC---CccCCCceEEEEEec
Confidence 4578888887677789999888865 3333355554211112222112222211100 00 000135689999988
Q ss_pred ccceEEEEeCCcchhhhHHHHHHHHH
Q 011274 452 LRGVVEFECRSQREYDIWTQGVARLL 477 (489)
Q Consensus 452 ~~GvvEFeC~sq~~~q~W~~gI~~LL 477 (489)
++-.+.|.|.+..+.+.|.+.|+..+
T Consensus 76 ~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 76 DRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 73399999999999999999998764
No 5
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=95.73 E-value=0.14 Score=39.66 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=62.1
Q ss_pred hccceeeeccCCceeeEEEEEEEcCccEEEEEeeccc------cccccccccccEEEeeccCCCCCCCcccccCCCccee
Q 011274 372 RGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRH------VAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRY 445 (489)
Q Consensus 372 rG~eLlkrTrkG~lhwk~VSVyink~~qV~LKmKSkH------v~GaftKKKK~VV~~V~~d~paWpgr~~~e~~e~r~Y 445 (489)
+.|.|++++ .+.-.|+..-+.+.. ++++ =-++.. .-+.|.-..- .|....+... ....+...+
T Consensus 3 ~~G~L~~~~-~~~~~wk~r~~vL~~-~~L~-~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-------~~~~~~~~~ 71 (104)
T PF00169_consen 3 KEGWLLKKS-SSRKKWKKRYFVLRD-SYLL-YYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDF-------LSNKKRKNC 71 (104)
T ss_dssp EEEEEEEEE-SSSSSEEEEEEEEET-TEEE-EESSTTTTTESSESEEEEGTTE-EEEEETSSTS-------TSTSSSSSE
T ss_pred EEEEEEEEC-CCCCCeEEEEEEEEC-CEEE-EEecCccccceeeeEEEEecCc-eEEEcCcccc-------ccccCCCcE
Confidence 467888988 777889999888854 4433 333332 1222222222 2222222210 133467889
Q ss_pred eeeeecccceEEEEeCCcchhhhHHHHHHHHH
Q 011274 446 FGLKTVLRGVVEFECRSQREYDIWTQGVARLL 477 (489)
Q Consensus 446 FglkTa~~GvvEFeC~sq~~~q~W~~gI~~LL 477 (489)
|-|.+.++..+.|.|+|..+++.|.+.|+..+
T Consensus 72 f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 72 FEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 99999984499999999999999999999865
No 6
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.68 E-value=0.26 Score=36.77 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=30.4
Q ss_pred cceeeeeeecccceEEEEeCCcchhhhHHHHHHH
Q 011274 442 DRRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 475 (489)
Q Consensus 442 ~r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~ 475 (489)
...+|-|.+.+...+.|.|.|..+++.|.+.|+.
T Consensus 62 ~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 62 RKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence 5689999988767899999999999999999864
No 7
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.60 E-value=0.54 Score=37.18 Aligned_cols=93 Identities=15% Similarity=0.187 Sum_probs=58.0
Q ss_pred hccceeeeccCCceeeEEEEEEEcCccEEEEEeeccccccccccccccEEEeeccCCCCCCCcccccCCCcceeeeeeec
Q 011274 372 RGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTV 451 (489)
Q Consensus 372 rG~eLlkrTrkG~lhwk~VSVyink~~qV~LKmKSkHv~GaftKKKK~VV~~V~~d~paWpgr~~~e~~e~r~YFglkTa 451 (489)
+.|-|+|+.+++.-.|+..=+.+. .+.+++-...... +...-..+++....-. + ..+..+....|-|.|.
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~-~~~l~~y~~~~~~-----~~~~~~~i~l~~~~v~-~---~~~~~~~~~~f~i~~~ 70 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLK-NGQLTYHHRLKDY-----DNAHVKEIDLRRCTVR-H---NGKQPDRRFCFEVISP 70 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEe-CCeEEEEcCCccc-----ccccceEEeccceEEe-c---CccccCCceEEEEEcC
Confidence 357899999887667999877775 5666664333221 0111111222110000 0 1111135679999998
Q ss_pred ccceEEEEeCCcchhhhHHHHHHH
Q 011274 452 LRGVVEFECRSQREYDIWTQGVAR 475 (489)
Q Consensus 452 ~~GvvEFeC~sq~~~q~W~~gI~~ 475 (489)
+ +.+.|..++..+.+.|+..|+.
T Consensus 71 ~-~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 71 T-KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred C-cEEEEECCCHHHHHHHHHHHhc
Confidence 8 8999999999999999999863
No 8
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.47 E-value=1.8 Score=37.34 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=54.2
Q ss_pred hccceeeeccCCceeeEEEEEEEcCccEEEEEeeccccccccccccccEEEeeccCCCCCCCcccc--cC-CCcceeeee
Q 011274 372 RGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLL--EG-GEDRRYFGL 448 (489)
Q Consensus 372 rG~eLlkrTrkG~lhwk~VSVyink~~qV~LKmKSkHv~GaftKKKK~VV~~V~~d~paWpgr~~~--e~-~e~r~YFgl 448 (489)
|.|.|+|..|+| . |+..-+..|. ||=.-+++. +++.++.|.+..+=. +-.+. ++ ......|=|
T Consensus 4 kEG~L~K~~~k~-~-~~R~~FLFnD----~LlY~~~~~----~~~~~y~~~~~i~L~----~~~V~~~~~~~~~~~~F~I 69 (99)
T cd01220 4 RQGCLLKLSKKG-L-QQRMFFLFSD----LLLYTSKSP----TDQNSFRILGHLPLR----GMLTEESEHEWGVPHCFTI 69 (99)
T ss_pred eEEEEEEEeCCC-C-ceEEEEEccc----eEEEEEeec----CCCceEEEEEEEEcC----ceEEeeccCCcCCceeEEE
Confidence 578999999998 3 4454444443 222223331 233344444432110 00011 11 122467889
Q ss_pred eecccceEEEEeCCcchhhhHHHHHHHHH
Q 011274 449 KTVLRGVVEFECRSQREYDIWTQGVARLL 477 (489)
Q Consensus 449 kTa~~GvvEFeC~sq~~~q~W~~gI~~LL 477 (489)
.+.+ ..+.|-+.+..|++.|.+.|+.-+
T Consensus 70 ~~~~-ks~~l~A~s~~Ek~~Wi~~i~~aI 97 (99)
T cd01220 70 FGGQ-CAITVAASTRAEKEKWLADLSKAI 97 (99)
T ss_pred EcCC-eEEEEECCCHHHHHHHHHHHHHHh
Confidence 8887 689999999999999999998754
No 9
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=90.62 E-value=2.1 Score=36.34 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=53.6
Q ss_pred hccceeeeccCCceeeEEEEEEEcCccEEEEEeecccc-cc-ccccccccEEEeeccCCCCCCCcccccCCCcceeeeee
Q 011274 372 RGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHV-AG-TITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLK 449 (489)
Q Consensus 372 rG~eLlkrTrkG~lhwk~VSVyink~~qV~LKmKSkHv-~G-aftKKKK~VV~~V~~d~paWpgr~~~e~~e~r~YFglk 449 (489)
+.|.|+|..++.. .|+.--+|+=.+ ++|==+.++. +| .|..+..--|.++.-..+ ++.+...-|=|.
T Consensus 4 keG~L~K~~~~~~-~~k~RyffLFnd--~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~--------~~~~~~~~F~I~ 72 (101)
T cd01219 4 KEGSVLKISSTTE-KTEERYLFLFND--LLLYCVPRKMIGGSKFKVRARIDVSGMQVCEG--------DNLERPHSFLVS 72 (101)
T ss_pred cceEEEEEecCCC-CceeEEEEEeCC--EEEEEEcccccCCCcEEEEEEEecccEEEEeC--------CCCCcCceEEEe
Confidence 5688999887652 565555666333 3333333332 12 222222221222111100 011334568898
Q ss_pred ecccceEEEEeCCcchhhhHHHHHHHHH
Q 011274 450 TVLRGVVEFECRSQREYDIWTQGVARLL 477 (489)
Q Consensus 450 Ta~~GvvEFeC~sq~~~q~W~~gI~~LL 477 (489)
+.+ ..++|-|+++.+++.|.+.|+..+
T Consensus 73 ~~~-rsf~l~A~s~eEk~~W~~ai~~~i 99 (101)
T cd01219 73 GKQ-RCLELQARTQKEKNDWVQAIFSII 99 (101)
T ss_pred cCC-cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 888 689999999999999999998765
No 10
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=89.85 E-value=3.9 Score=30.65 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=29.7
Q ss_pred cceeeeeeecc--cceEEEEeCCcchhhhHHHHHHH
Q 011274 442 DRRYFGLKTVL--RGVVEFECRSQREYDIWTQGVAR 475 (489)
Q Consensus 442 ~r~YFglkTa~--~GvvEFeC~sq~~~q~W~~gI~~ 475 (489)
....|-|.+.+ ...+.|.|.++.+.+.|.+.|++
T Consensus 63 ~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 63 DPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred CCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence 45789999884 58999999999999999998864
No 11
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.49 E-value=7.3 Score=32.72 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=29.6
Q ss_pred ceeeeeeecccceEEEEeCCcchhhhHHHHHHHH
Q 011274 443 RRYFGLKTVLRGVVEFECRSQREYDIWTQGVARL 476 (489)
Q Consensus 443 r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~L 476 (489)
...|-|.|.+ ++..|.|+|..+.+.|++.|+..
T Consensus 61 ~~~F~i~t~~-r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 61 KGRFEIHSNN-EVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CCEEEEEcCC-cEEEEECCCHHHHHHHHHHHHhh
Confidence 5689999987 79999999999999999999863
No 12
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=84.25 E-value=9.4 Score=31.12 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=30.4
Q ss_pred CcceeeeeeecccceEEEEeCCcchhhhHHHHHHHH
Q 011274 441 EDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARL 476 (489)
Q Consensus 441 e~r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~L 476 (489)
....+|.+.|.. ++..|.+++..+.+.|++.|+.+
T Consensus 66 ~~~~~f~i~t~~-r~~~~~a~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 66 SRKGFFDLKTSK-RTYNFLAENINEAQRWKEKIQQC 100 (101)
T ss_pred CCceEEEEEeCC-ceEEEECCCHHHHHHHHHHHHhh
Confidence 356789998876 79999999999999999999764
No 13
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=84.24 E-value=7.9 Score=34.64 Aligned_cols=93 Identities=13% Similarity=0.287 Sum_probs=56.5
Q ss_pred ccceeeeccCCcee--eEEEEEEEcCccEE----EEEeec-cccccccccccccEEEeeccCCCCCCCcccccCCCccee
Q 011274 373 GCELLKRTRKGDLH--WKIVSVYINRLNQV----MLKMKS-RHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRY 445 (489)
Q Consensus 373 G~eLlkrTrkG~lh--wk~VSVyink~~qV----~LKmKS-kHv~GaftKKKK~VV~~V~~d~paWpgr~~~e~~e~r~Y 445 (489)
.|=|+.++.++ +. |-..-+...+.+.+ ...-+| +.++|.. -....++|-.+.. ...+.-|.|-+
T Consensus 2 ~GYLy~~~k~~-~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v---~~~e~~~l~sc~~-----r~~~~~dRRFC 72 (104)
T cd01249 2 EGYLYMQEKSK-FGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAV---AQDETLTLKSCSR-----RKTESIDKRFC 72 (104)
T ss_pred CceEEEEcCCC-CCCeEEEEEEEEEcCCcEEEEEecccccccccCccc---ccceEEeeeeccc-----cccCCccceee
Confidence 46789999666 55 66554444443333 333333 1222322 2344555555532 23344477889
Q ss_pred eeeeeccc-ceEEEEeCCcchhhhHHHHHH
Q 011274 446 FGLKTVLR-GVVEFECRSQREYDIWTQGVA 474 (489)
Q Consensus 446 FglkTa~~-GvvEFeC~sq~~~q~W~~gI~ 474 (489)
|=|.+.++ |.+-|...|+.+++.|.+.|.
T Consensus 73 Fei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 73 FDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred EeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 99855542 689999999999999998874
No 14
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=80.78 E-value=2.2 Score=37.48 Aligned_cols=34 Identities=15% Similarity=0.381 Sum_probs=29.4
Q ss_pred CcceeeeeeecccceEEEEeCCcchhhhHHHHHHH
Q 011274 441 EDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 475 (489)
Q Consensus 441 e~r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~ 475 (489)
..+.-|-|.|.+ +.++|.|+|.++.+.|.+.|+.
T Consensus 87 ~~~~~~~i~t~~-R~~~l~a~s~~~~~~Wi~~i~~ 120 (121)
T cd01254 87 GLRHGLKITNSN-RSLKLKCKSSRKLKQWMASIED 120 (121)
T ss_pred CCceEEEEEcCC-cEEEEEeCCHHHHHHHHHHHHh
Confidence 345667788998 7999999999999999999985
No 15
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=80.72 E-value=12 Score=31.66 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=54.5
Q ss_pred hccceeeeccCCceeeEEEEEEEcCccEEEEEeec-cccccccccccccEEEeeccCCCCCCCcccccCCCcceeeeeee
Q 011274 372 RGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKS-RHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKT 450 (489)
Q Consensus 372 rG~eLlkrTrkG~lhwk~VSVyink~~qV~LKmKS-kHv~GaftKKKK~VV~~V~~d~paWpgr~~~e~~e~r~YFglkT 450 (489)
|.|-|.|+.... -.||.-=+.+...--..-|=.+ ...-|.|.-. .+.|.-+ .|.. ........|-|.|
T Consensus 4 k~G~L~Kkg~~~-k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~-~~~v~~~-~~~~--------~~~~~~~~F~I~t 72 (100)
T cd01233 4 KKGYLNFPEETN-SGWTRRFVVVRRPYLHIYRSDKDPVERGVINLS-TARVEHS-EDQA--------AMVKGPNTFAVCT 72 (100)
T ss_pred eeEEEEeeCCCC-CCcEEEEEEEECCEEEEEccCCCccEeeEEEec-ccEEEEc-cchh--------hhcCCCcEEEEEC
Confidence 557788876644 4588887777653222222211 2333444433 2222211 1100 0001346799999
Q ss_pred cccceEEEEeCCcchhhhHHHHHHHH
Q 011274 451 VLRGVVEFECRSQREYDIWTQGVARL 476 (489)
Q Consensus 451 a~~GvvEFeC~sq~~~q~W~~gI~~L 476 (489)
.+ ++..|.|+|+.+.+.|.+.|+.+
T Consensus 73 ~~-rt~~~~A~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 73 KH-RGYLFQALSDKEMIDWLYALNPL 97 (100)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHhhhh
Confidence 87 79999999999999999999764
No 16
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=79.64 E-value=16 Score=31.52 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=56.2
Q ss_pred HHHHhhccceeeeccCCceeeEEEEEEEcC-ccEEEEEeeccccccccccccccEEEeeccCCCCCC----CcccccC--
Q 011274 367 RELLARGCELLKRTRKGDLHWKIVSVYINR-LNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWP----GRHLLEG-- 439 (489)
Q Consensus 367 ~e~larG~eLlkrTrkG~lhwk~VSVyink-~~qV~LKmKSkHv~GaftKKKK~VV~~V~~d~paWp----gr~~~e~-- 439 (489)
.+.|.+|+.|.|-++++ .-+...+.++. .++++-+=..+. .++++-++-.+|+-.+. .+...+.
T Consensus 3 ~~~L~~G~~~~K~~~~~--~~~~~~f~ld~~~~~l~W~~~~~~-------~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~ 73 (115)
T cd01248 3 PEALQRGSVFIKWDDTS--RERRRLFRLDEKGFFLYWKDEGKK-------EKKVLDISSIKEIRTGKQPKDLKLRAELNQ 73 (115)
T ss_pred hHHHhCCCEEEEEcCCC--ceeeEEEEEcCCCcEEEEeCCCCc-------cccEEEehhhhhhhCCCCCcchHHhhhhhc
Confidence 46789999999998833 33446666665 345554422211 23333333334443221 1111100
Q ss_pred --CCcceeeeeeec-c--cceEEEEeCCcchhhhHHHHHHHH
Q 011274 440 --GEDRRYFGLKTV-L--RGVVEFECRSQREYDIWTQGVARL 476 (489)
Q Consensus 440 --~e~r~YFglkTa-~--~GvvEFeC~sq~~~q~W~~gI~~L 476 (489)
..+.++|=|-=. + ...+-|=|.|..+.+.|++||..|
T Consensus 74 ~~~~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~L 115 (115)
T cd01248 74 GNSLEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRKL 115 (115)
T ss_pred CCCccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhhC
Confidence 134455543211 1 245899999999999999999865
No 17
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=78.96 E-value=15 Score=32.78 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=28.3
Q ss_pred ceeeeeeecccceEEEEeCCcchhhhHHHHHHHHH
Q 011274 443 RRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLL 477 (489)
Q Consensus 443 r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~LL 477 (489)
..-|=|.|.+...++|-|++..+++.|.+.+..++
T Consensus 75 knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~ 109 (112)
T cd01261 75 KNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQ 109 (112)
T ss_pred CceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHh
Confidence 46688877533579999999999999999887654
No 18
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=76.80 E-value=23 Score=30.28 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=30.2
Q ss_pred eeeeeecccceEEEEeCCcchhhhHHHHHHHHHH
Q 011274 445 YFGLKTVLRGVVEFECRSQREYDIWTQGVARLLN 478 (489)
Q Consensus 445 YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~LL~ 478 (489)
.|-|.|.+ ++..|.|++..+.+.|++.|+..|.
T Consensus 69 ~F~i~t~~-Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 69 GVTLVTPE-RKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred eEEEEeCC-eEEEEECCCHHHHHHHHHHHHHHhc
Confidence 78899997 7999999999999999999998764
No 19
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=75.79 E-value=23 Score=27.77 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=51.5
Q ss_pred cceeeeccCCceeeEEEEEEEcCccEEEEEeeccccccccccccccEEEeeccCCCCCCCcccccCCCcceeeeeeeccc
Q 011274 374 CELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLKTVLR 453 (489)
Q Consensus 374 ~eLlkrTrkG~lhwk~VSVyink~~qV~LKmKSkHv~GaftKKKK~VV~~V~~d~paWpgr~~~e~~e~r~YFglkTa~~ 453 (489)
|-|+|..+.. =.|+..=++++ .+.+.+ -+++.-.+ ..-...+.++-|.. ....++...|=|.|.+.
T Consensus 3 G~L~k~~~~~-~~W~~r~~vl~-~~~L~~-~~~~~~~~--~~~~~~i~l~~~~~---------~~~~~~~~~F~i~~~~~ 68 (91)
T cd01246 3 GWLLKWTNYL-KGWQKRWFVLD-NGLLSY-YKNKSSMR--GKPRGTILLSGAVI---------SEDDSDDKCFTIDTGGD 68 (91)
T ss_pred EEEEEecccC-CCceeeEEEEE-CCEEEE-EecCccCC--CCceEEEEeceEEE---------EECCCCCcEEEEEcCCC
Confidence 4567766544 46888877786 344443 23332111 11222222222211 11112356788888875
Q ss_pred ceEEEEeCCcchhhhHHHHHHH
Q 011274 454 GVVEFECRSQREYDIWTQGVAR 475 (489)
Q Consensus 454 GvvEFeC~sq~~~q~W~~gI~~ 475 (489)
..+.|.+++..+.+.|++.|+.
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHh
Confidence 6899999999999999999864
No 20
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=73.28 E-value=22 Score=31.89 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=32.3
Q ss_pred CcceeeeeeecccceEEEEeCCcchhhhHHHHHHHHH
Q 011274 441 EDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLL 477 (489)
Q Consensus 441 e~r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~LL 477 (489)
....-|.|+|.+.+.+-|.|.+..+-+.|++.|+..-
T Consensus 75 Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~ 111 (117)
T cd01230 75 KKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVA 111 (117)
T ss_pred CCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 4567799999987889999999999999999998643
No 21
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=72.79 E-value=8.2 Score=40.77 Aligned_cols=98 Identities=18% Similarity=0.334 Sum_probs=60.6
Q ss_pred cceeeeccCCceeeEEEEEEEc----CccEEEEEeecc----ccccccc---cccccEE------EeeccCCCCCCCccc
Q 011274 374 CELLKRTRKGDLHWKIVSVYIN----RLNQVMLKMKSR----HVAGTIT---KKKKNVV------LEVIPDMPAWPGRHL 436 (489)
Q Consensus 374 ~eLlkrTrkG~lhwk~VSVyin----k~~qV~LKmKSk----Hv~Gaft---KKKK~VV------~~V~~d~paWpgr~~ 436 (489)
|.+.+ ..+++.||..-++|. ...++......+ .+.=+++ ..+.||- .|||.= .+.
T Consensus 377 g~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 448 (496)
T PTZ00283 377 GIVKK--QSSDLSWKRRYLCIRGELEKGETLTVDVAPKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFPV------PSK 448 (496)
T ss_pred eEEec--ccCCcccceeEEEEeeecccCceeecCCCccchhhhhhhhhhhhhhhhhcccCchhhhcccccc------cHH
Confidence 44444 366777888887775 222333333322 1122222 2445664 444432 233
Q ss_pred ccCCCcceeeeeeecccceEEEEeCCcchhhhHHHHHHHHHHH
Q 011274 437 LEGGEDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLLNV 479 (489)
Q Consensus 437 ~e~~e~r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~LL~~ 479 (489)
+.+.....-|.|.+.....+-|.|.+..+++.|.+.||+-|-+
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (496)
T PTZ00283 449 YTGSNAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLGI 491 (496)
T ss_pred hhCCCCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcCC
Confidence 4343446779998887667999999999999999999987754
No 22
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=72.13 E-value=34 Score=28.05 Aligned_cols=33 Identities=9% Similarity=0.210 Sum_probs=28.6
Q ss_pred cceeeeeeecccceEEEEeCCcchhhhHHHHHH
Q 011274 442 DRRYFGLKTVLRGVVEFECRSQREYDIWTQGVA 474 (489)
Q Consensus 442 ~r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~ 474 (489)
....|-|.|.+.+.+.|.|++..+.+.|.+.|.
T Consensus 62 k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~ 94 (96)
T cd01260 62 KKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLI 94 (96)
T ss_pred CceEEEECCCCCcEEEEEeCCHHHHHHHHHHHH
Confidence 456799988875799999999999999999885
No 23
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=72.13 E-value=7.2 Score=41.97 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=55.6
Q ss_pred eeeeccCCceeeEEEEEEEcCccEEEEEeeccccccccccccccEEEeeccCCCCCCCcccccCCCcceeeeee-ecccc
Q 011274 376 LLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGLK-TVLRG 454 (489)
Q Consensus 376 LlkrTrkG~lhwk~VSVyink~~qV~LKmKSkHv~GaftKKKK~VV~~V~~d~paWpgr~~~e~~e~r~YFglk-Ta~~G 454 (489)
.+--|..|.|+|+. .++=.|-|.|.-+ |....-+|-+|..+.. .+..-++||-. ---+.
T Consensus 23 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 82 (481)
T PLN02958 23 PLTLTAEGKLRWTD-------SGQRCLTVEKEVL-GFVIEGSKIRVKTIVE------------KGGGICCRGSAGALARK 82 (481)
T ss_pred eEEeccCCEEEeec-------CCcceEEEeeeee-EEEEeCCEEEEEEEEe------------cCCcccccCCCCCceee
Confidence 34456899999992 4555777776543 4444444555554432 23455666632 11145
Q ss_pred eEEEEeCCcchhhhHHHHHHHHHHHH
Q 011274 455 VVEFECRSQREYDIWTQGVARLLNVA 480 (489)
Q Consensus 455 vvEFeC~sq~~~q~W~~gI~~LL~~~ 480 (489)
.+.|+|.+...++.|.+.|...|.-.
T Consensus 83 ~~~~~~~~~~~~~~w~~~~~~~~~~~ 108 (481)
T PLN02958 83 DFVFEPLSDESRRLWCQKLRDYLDSL 108 (481)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 69999999999999999999988533
No 24
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=66.55 E-value=62 Score=28.14 Aligned_cols=25 Identities=16% Similarity=0.415 Sum_probs=21.9
Q ss_pred ceEEEEeCCcchhhhHHHHHHHHHH
Q 011274 454 GVVEFECRSQREYDIWTQGVARLLN 478 (489)
Q Consensus 454 GvvEFeC~sq~~~q~W~~gI~~LL~ 478 (489)
.++.|.|++..+.+.|++.|+..+.
T Consensus 90 ~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 90 SVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHh
Confidence 4677999999999999999988663
No 25
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=66.48 E-value=8.9 Score=32.26 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=29.3
Q ss_pred cceeeeeeecccceEEEEeCCcchhhhHHHHHHH
Q 011274 442 DRRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 475 (489)
Q Consensus 442 ~r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~ 475 (489)
+..-|-|.|...++..|.++|..+.+.|++.|++
T Consensus 57 ~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 57 DENRFDISVNENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 3467888777668999999999999999999985
No 26
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=63.96 E-value=16 Score=31.88 Aligned_cols=92 Identities=13% Similarity=0.206 Sum_probs=46.6
Q ss_pred eeccCCceeeEEEEEEEcCccEEEEEeec--cccccccccc---ccc---EEEeeccCCCCCCCcccccCCCcceeeeee
Q 011274 378 KRTRKGDLHWKIVSVYINRLNQVMLKMKS--RHVAGTITKK---KKN---VVLEVIPDMPAWPGRHLLEGGEDRRYFGLK 449 (489)
Q Consensus 378 krTrkG~lhwk~VSVyink~~qV~LKmKS--kHv~GaftKK---KK~---VV~~V~~d~paWpgr~~~e~~e~r~YFglk 449 (489)
|+++.|.=.||.+-+-+. |+++.=-|. ....+.+.-. +.. -++++..-+. -+ -.+-......|=|+
T Consensus 17 kk~~~~~R~Wk~~y~vL~--g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a-~~---a~dY~Kr~~VFrL~ 90 (119)
T PF15410_consen 17 KKASRSKRSWKQVYAVLQ--GGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALA-EI---ASDYTKRKNVFRLR 90 (119)
T ss_dssp CC---S---EEEEEEEEE--TTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EE-EE---ETTBTTCSSEEEEE
T ss_pred CCcCCCCCCccEEeEEEE--CCEEEEEccCcccccCCcccccccccCcceeEEEecceEE-Ee---CcccccCCeEEEEE
Confidence 556667789999999994 444443343 2222222210 111 1122221110 00 01112467889999
Q ss_pred ecccceEEEEeCCcchhhhHHHHHHH
Q 011274 450 TVLRGVVEFECRSQREYDIWTQGVAR 475 (489)
Q Consensus 450 Ta~~GvvEFeC~sq~~~q~W~~gI~~ 475 (489)
|++.+..=|.|.|..+-+.|++.|+.
T Consensus 91 ~~dg~e~Lfqa~~~~~m~~Wi~~IN~ 116 (119)
T PF15410_consen 91 TADGSEYLFQASDEEEMNEWIDAINY 116 (119)
T ss_dssp -TTS-EEEEE-SSHHHHHHHHHHHHH
T ss_pred eCCCCEEEEECCCHHHHHHHHHHHhh
Confidence 99977899999999999999999985
No 27
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=63.41 E-value=55 Score=27.21 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=28.1
Q ss_pred ceeeeeeecccceEEEEeCCcchhhhHHHHHHH
Q 011274 443 RRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 475 (489)
Q Consensus 443 r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~ 475 (489)
..-|-|++.....+-|.++|..+.+.|++.|+.
T Consensus 71 ~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 71 KHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred ceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 456899887756899999999999999999863
No 28
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=62.63 E-value=11 Score=32.88 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=29.8
Q ss_pred cceeeeeeecccceEEEEeCCcchhhhHHHHHHHH
Q 011274 442 DRRYFGLKTVLRGVVEFECRSQREYDIWTQGVARL 476 (489)
Q Consensus 442 ~r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~L 476 (489)
+..-|.|.|.+ +.+-|-|+|..+.+.|.+.|..|
T Consensus 68 ~~~~f~i~t~d-r~f~l~aese~E~~~Wi~~i~~~ 101 (101)
T cd01257 68 HRHLIALYTRD-EYFAVAAENEAEQDSWYQALLEL 101 (101)
T ss_pred cCeEEEEEeCC-ceEEEEeCCHHHHHHHHHHHhhC
Confidence 45789999988 79999999999999999988653
No 29
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=61.33 E-value=79 Score=27.14 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=28.6
Q ss_pred cceeeeeeecccceEEEEeCCcchhhhHHHHHHH
Q 011274 442 DRRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 475 (489)
Q Consensus 442 ~r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~ 475 (489)
....|-|.|.. ++..|.|++..+.+.|++.|+.
T Consensus 73 ~~~~F~i~t~~-r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 73 FKYPFQVVHDE-GTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred cCccEEEEeCC-CeEEEEcCCHHHHHHHHHHHHh
Confidence 45678899976 7899999999999999999875
No 30
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=59.01 E-value=17 Score=31.66 Aligned_cols=36 Identities=25% Similarity=0.511 Sum_probs=28.8
Q ss_pred cceeeeeeecc--cceEEEEeCCcchhhhHHHHHHHHH
Q 011274 442 DRRYFGLKTVL--RGVVEFECRSQREYDIWTQGVARLL 477 (489)
Q Consensus 442 ~r~YFglkTa~--~GvvEFeC~sq~~~q~W~~gI~~LL 477 (489)
+.+-|-|...+ +..++|.|+|..+++.|.+.|+.+|
T Consensus 58 d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 58 EPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 35888774332 2479999999999999999999875
No 31
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=55.47 E-value=87 Score=27.40 Aligned_cols=90 Identities=21% Similarity=0.295 Sum_probs=53.1
Q ss_pred cceeeeccCCceeeEEEEEEEcC---ccEEE-EEeec-cccccccccccccEEEeeccCCCCCCCcccccCCCcceeeee
Q 011274 374 CELLKRTRKGDLHWKIVSVYINR---LNQVM-LKMKS-RHVAGTITKKKKNVVLEVIPDMPAWPGRHLLEGGEDRRYFGL 448 (489)
Q Consensus 374 ~eLlkrTrkG~lhwk~VSVyink---~~qV~-LKmKS-kHv~GaftKKKK~VV~~V~~d~paWpgr~~~e~~e~r~YFgl 448 (489)
|=|+|++..-.--||.=.+.+.. .++.- ++=++ +.--|.+-- ..+.|..|++.+ + +..-+|-|
T Consensus 3 G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l-~~~~V~~v~ds~--------~---~r~~cFel 70 (98)
T cd01245 3 GNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDL-SDAYLYPVHDSL--------F---GRPNCFQI 70 (98)
T ss_pred CccccCCCCcccccceeEEEEecCCCCceEEEEcCCCCCCccceeec-cccEEEEccccc--------c---CCCeEEEE
Confidence 44788875326778888776631 12222 21111 111122221 222555555542 1 45588999
Q ss_pred eecccceEEEEeCCcchhhhHHHHHHH
Q 011274 449 KTVLRGVVEFECRSQREYDIWTQGVAR 475 (489)
Q Consensus 449 kTa~~GvvEFeC~sq~~~q~W~~gI~~ 475 (489)
.+..++.+=|-|.+..+++.|.+.|++
T Consensus 71 ~~~~~~~~y~~~a~~~er~~Wi~~l~~ 97 (98)
T cd01245 71 VERALPTVYYSCRSSEERDKWIESLQA 97 (98)
T ss_pred ecCCCCeEEEEeCCHHHHHHHHHHHhc
Confidence 888744788999999999999999874
No 32
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=55.22 E-value=22 Score=31.30 Aligned_cols=32 Identities=13% Similarity=0.228 Sum_probs=29.2
Q ss_pred ceeeeeeecccceEEEEeCCcchhhhHHHHHHH
Q 011274 443 RRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 475 (489)
Q Consensus 443 r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~ 475 (489)
+..|-+.|.+ ++..|.++|..+.+.|.+.|+.
T Consensus 68 ~~~Fei~tp~-rt~~l~A~se~e~e~WI~~i~~ 99 (101)
T cd01264 68 PKAFEIFTAD-KTYILKAKDEKNAEEWLQCLNI 99 (101)
T ss_pred CcEEEEEcCC-ceEEEEeCCHHHHHHHHHHHHh
Confidence 4699999998 7999999999999999998874
No 33
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=54.79 E-value=1.1e+02 Score=27.47 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=30.5
Q ss_pred cceeeeeeecccc----eEEEEeCCcchhhhHHHHHHHHHH
Q 011274 442 DRRYFGLKTVLRG----VVEFECRSQREYDIWTQGVARLLN 478 (489)
Q Consensus 442 ~r~YFglkTa~~G----vvEFeC~sq~~~q~W~~gI~~LL~ 478 (489)
+.+-|.|....+. .+-+.+.|...|+.|+..|..+|.
T Consensus 73 d~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 73 DPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred CCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 5578998655543 678999999999999999999985
No 34
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=52.11 E-value=1.1e+02 Score=26.89 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=30.2
Q ss_pred ceeeeeeecccceEEEEeCCcchhhhHHHHHHHHHH
Q 011274 443 RRYFGLKTVLRGVVEFECRSQREYDIWTQGVARLLN 478 (489)
Q Consensus 443 r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~LL~ 478 (489)
..-|=|.|.+ ..+.+-|.+..+++.|.+.|+.-..
T Consensus 65 ~n~f~I~~~~-kSf~v~A~s~~eK~eWl~~i~~ai~ 99 (104)
T cd01218 65 RNGWIIKTPT-KSFAVYAATETEKREWMLHINKCVT 99 (104)
T ss_pred cceEEEecCC-eEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 4568899988 6999999999999999999887553
No 35
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=50.51 E-value=1.3e+02 Score=26.05 Aligned_cols=31 Identities=6% Similarity=0.168 Sum_probs=27.3
Q ss_pred eeeeeeecccceEEEEeCCcchhhhHHHHHHH
Q 011274 444 RYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 475 (489)
Q Consensus 444 ~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~ 475 (489)
..|-+.|.+ ++.-|.|++..+.+.|.+.|+.
T Consensus 67 ~~fqivt~~-r~~yi~a~s~~E~~~Wi~al~k 97 (98)
T cd01244 67 DIITIVCED-DTMQLQFEAPVEATDWLNALEK 97 (98)
T ss_pred ceEEEEeCC-CeEEEECCCHHHHHHHHHHHhc
Confidence 358889987 7999999999999999998864
No 36
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=43.26 E-value=79 Score=33.08 Aligned_cols=96 Identities=19% Similarity=0.227 Sum_probs=59.0
Q ss_pred hhccceeeeccCCceeeEEEEEEEcCccEEEEEeeccc-cccccccccccE--EEeeccCCCCCCCcccccCCCcceeee
Q 011274 371 ARGCELLKRTRKGDLHWKIVSVYINRLNQVMLKMKSRH-VAGTITKKKKNV--VLEVIPDMPAWPGRHLLEGGEDRRYFG 447 (489)
Q Consensus 371 arG~eLlkrTrkG~lhwk~VSVyink~~qV~LKmKSkH-v~GaftKKKK~V--V~~V~~d~paWpgr~~~e~~e~r~YFg 447 (489)
.+.|-|++...+. +||.=-+|+. .+++.+..+... ..|. ..+--+. |.+||... ++... ...-+|-
T Consensus 378 ~~~G~l~k~~~~~--~wk~ry~~l~-~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~v~pv~------~~~~~-~~~~~~~ 446 (478)
T PTZ00267 378 THGGYLYKYSSDM--RWKKRYFYIG-NGQLRISLSENPENDGV-APKSVNLETVNDVFPVP------EVYSQ-KHPNQLV 446 (478)
T ss_pred ccceEEeccCCCc--chhhheEEec-CCceEEEeccccccCCC-CCccccHHHhccccccc------HHhcC-CCCceEE
Confidence 3456777776654 5776667774 577777655321 1122 1111122 66666541 11111 2345688
Q ss_pred eeecccceEEEEeCCcchhhhHHHHHHHHH
Q 011274 448 LKTVLRGVVEFECRSQREYDIWTQGVARLL 477 (489)
Q Consensus 448 lkTa~~GvvEFeC~sq~~~q~W~~gI~~LL 477 (489)
++|.....+=|.|++..+.+.|...|+.-|
T Consensus 447 i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 447 LWFNNGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EEecCCcEEEEecCChHHHHHHHHHHHHHh
Confidence 888664568899999999999999999876
No 37
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=42.38 E-value=40 Score=29.30 Aligned_cols=34 Identities=12% Similarity=0.321 Sum_probs=27.5
Q ss_pred CcceeeeeeecccceEEEEeCCcchhhhHHHHHHH
Q 011274 441 EDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 475 (489)
Q Consensus 441 e~r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~ 475 (489)
.+..-|-+.|.+ +.+-|.|++..+...|.+.|+.
T Consensus 78 ~~~~~~~i~T~~-kt~~l~~~t~~d~~~Wi~aL~~ 111 (112)
T PF15413_consen 78 IHLKVFSIFTPT-KTFHLRCETREDRYDWIEALQE 111 (112)
T ss_dssp -SSEEEEEE-SS--EEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCCcEEECCC-cEEEEEECCHHHHHHHHHHHHh
Confidence 456778889998 7999999999999999999874
No 38
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=37.79 E-value=43 Score=28.53 Aligned_cols=31 Identities=16% Similarity=0.489 Sum_probs=27.0
Q ss_pred eeeeeecccceEEEEeCCcchhhhHHHHHHHH
Q 011274 445 YFGLKTVLRGVVEFECRSQREYDIWTQGVARL 476 (489)
Q Consensus 445 YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~L 476 (489)
-|-+.|.+ ++.-|-++|..+.+.|++.|..+
T Consensus 77 ~f~i~t~~-r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 77 GFDIETIV-RDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEEeCC-ccEEEEECCHHHHHHHHHHHHhh
Confidence 47788876 79999999999999999999654
No 39
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=37.19 E-value=2.3e+02 Score=25.77 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=50.4
Q ss_pred ccceeeecc-CCceeeEEEEEEEcCccEEEEEeeccccccccccccccEEEeecc--CCCCCCCcccccCC-Ccceeeee
Q 011274 373 GCELLKRTR-KGDLHWKIVSVYINRLNQVMLKMKSRHVAGTITKKKKNVVLEVIP--DMPAWPGRHLLEGG-EDRRYFGL 448 (489)
Q Consensus 373 G~eLlkrTr-kG~lhwk~VSVyink~~qV~LKmKSkHv~GaftKKKK~VV~~V~~--d~paWpgr~~~e~~-e~r~YFgl 448 (489)
.|||.+.+. +|.-+=|.+.+|= +|+|+ -|+.++-|..=..|.-+.++.+. |+| .|++. ..+ +=..-|=|
T Consensus 5 ~Gel~~~s~~~g~~q~R~~FLFD---~~LI~-CKkd~~r~~~~~yKgri~l~~~~I~d~~--Dg~~~-~~~~~~knafkl 77 (109)
T cd01224 5 QGEATRQKQNKGWNSSRVLFLFD---HQMVL-CKKDLIRRDHLYYKGRIDLDRCEVVNIR--DGKMF-SSGHTIKNSLKI 77 (109)
T ss_pred eeeEEEEecccCCcccEEEEEec---ceEEE-EecccccCCcEEEEEEEEcccEEEEECC--CCccc-cCCceeEEEEEE
Confidence 478888775 4666655444442 45554 66655555444555555554431 211 12221 111 01112222
Q ss_pred --eecccceEEEEeCCcchhhhHHHHHH
Q 011274 449 --KTVLRGVVEFECRSQREYDIWTQGVA 474 (489)
Q Consensus 449 --kTa~~GvvEFeC~sq~~~q~W~~gI~ 474 (489)
.+.+. .+.|-|++..+++.|.+.+.
T Consensus 78 ~~~~~~~-~~~f~~Kt~e~K~~Wm~a~~ 104 (109)
T cd01224 78 YSESTDE-WYLFSFKSAERKHRWLSAFA 104 (109)
T ss_pred EEcCCCe-EEEEEECCHHHHHHHHHHHH
Confidence 22232 48999999999999998764
No 40
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=29.68 E-value=2.9e+02 Score=25.63 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=30.4
Q ss_pred cceeeeeeecc-cceEEEEeCCcchhhhHHHHHHHHH-HHH
Q 011274 442 DRRYFGLKTVL-RGVVEFECRSQREYDIWTQGVARLL-NVA 480 (489)
Q Consensus 442 ~r~YFglkTa~-~GvvEFeC~sq~~~q~W~~gI~~LL-~~~ 480 (489)
+.+-|.|.+.. .-.+.|.|.+...++.|++.|..+| .+.
T Consensus 79 d~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q~ 119 (133)
T cd01227 79 DTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQL 119 (133)
T ss_pred CccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 46788775543 1358899999999999999999998 443
No 41
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=29.29 E-value=84 Score=27.65 Aligned_cols=32 Identities=9% Similarity=0.058 Sum_probs=28.5
Q ss_pred cceeeeeeecccceEEEEeCCcchhhhHHHHHH
Q 011274 442 DRRYFGLKTVLRGVVEFECRSQREYDIWTQGVA 474 (489)
Q Consensus 442 ~r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~ 474 (489)
+...|-|.|.+ ++.-|-|++..+.+.|.+.|+
T Consensus 70 ~~~~f~I~tp~-R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 70 QKFSICILTPD-KEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred CccEEEEECCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 34679999998 899999999999999999876
No 42
>PF15409 PH_8: Pleckstrin homology domain
Probab=28.13 E-value=87 Score=27.27 Aligned_cols=34 Identities=12% Similarity=0.396 Sum_probs=28.7
Q ss_pred CcceeeeeeecccceEEEEeCCcchhhhHHHHHHH
Q 011274 441 EDRRYFGLKTVLRGVVEFECRSQREYDIWTQGVAR 475 (489)
Q Consensus 441 e~r~YFglkTa~~GvvEFeC~sq~~~q~W~~gI~~ 475 (489)
++.+-|-|.+.. -+--+++.|+.+.|.|++.++.
T Consensus 54 ~~~~~I~idsg~-~i~hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 54 KKSRRIDIDSGD-EIWHLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred CCCCEEEEEcCC-eEEEEEcCCHHHHHHHHHHHHh
Confidence 456778888776 5899999999999999999874
No 43
>COG3672 Predicted transglutaminase-like cysteine proteinase [General function prediction only]
Probab=27.86 E-value=2.2e+02 Score=28.38 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=16.4
Q ss_pred CCchhhhhhHHHhhcchhhHHHHHhhhhhhhcceeccccc
Q 011274 290 AGDIMTLTAGAATALRGAATLKARALKEVWNIAAVIPVEK 329 (489)
Q Consensus 290 pgDimTLTAaAATALRGAAtLKaR~~ke~~n~AaV~P~ek 329 (489)
+++-+-||. ...++|+ |.-..+ |+.|.|+.+
T Consensus 60 ~~~~~~Lt~------~~~~~L~-~VN~~v--N~~i~~~tD 90 (191)
T COG3672 60 DTDPVKLTP------DRWAELK-RVNASV--NTSIKPMTD 90 (191)
T ss_pred CCCccccCH------HHHHHHH-HHHHHH--hccccccch
Confidence 455556665 3455555 322222 467777655
No 44
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=27.44 E-value=2.6e+02 Score=25.83 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=17.3
Q ss_pred eEEEEeCCcchhhhHHHHHH
Q 011274 455 VVEFECRSQREYDIWTQGVA 474 (489)
Q Consensus 455 vvEFeC~sq~~~q~W~~gI~ 474 (489)
.++|.|+++.++++|.+.+.
T Consensus 100 el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 100 ELLLSADSQSDRERWLSALA 119 (125)
T ss_pred EEEEECCCHHHHHHHHHhcC
Confidence 37888999999999998874
Done!