Query 011276
Match_columns 489
No_of_seqs 369 out of 2824
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 04:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8l_A Molybdopterin biosynthe 100.0 7.4E-51 2.5E-55 424.0 30.9 238 1-255 170-408 (411)
2 2fts_A Gephyrin; gephyrin, neu 100.0 2.8E-49 9.7E-54 413.6 29.3 241 1-254 174-419 (419)
3 1uz5_A MOEA protein, 402AA lon 100.0 3.2E-49 1.1E-53 410.6 28.8 229 1-253 173-401 (402)
4 1wu2_A MOEA protein, molybdopt 100.0 3.7E-46 1.3E-50 386.9 20.5 221 1-251 175-396 (396)
5 1jlj_A Gephyrin; globular alph 100.0 1.8E-35 6.1E-40 277.5 16.1 170 254-450 1-173 (189)
6 2is8_A Molybdopterin biosynthe 100.0 3E-34 1E-38 263.6 17.1 158 289-451 1-158 (164)
7 3pzy_A MOG; ssgcid, seattle st 100.0 2.5E-34 8.5E-39 263.9 15.2 157 287-450 5-161 (164)
8 1uuy_A CNX1, molybdopterin bio 100.0 5.5E-34 1.9E-38 262.7 17.4 165 286-450 2-166 (167)
9 2pjk_A 178AA long hypothetical 100.0 5E-35 1.7E-39 272.0 8.3 148 3-164 10-174 (178)
10 3rfq_A Pterin-4-alpha-carbinol 100.0 8.4E-34 2.9E-38 264.4 15.8 156 285-449 26-184 (185)
11 3rfq_A Pterin-4-alpha-carbinol 100.0 4.1E-34 1.4E-38 266.5 10.1 141 4-164 26-179 (185)
12 2g2c_A Putative molybdenum cof 100.0 7E-33 2.4E-37 255.3 14.9 155 288-448 4-166 (167)
13 1jlj_A Gephyrin; globular alph 100.0 9.8E-34 3.4E-38 265.6 8.3 147 1-166 7-169 (189)
14 1di6_A MOGA, molybdenum cofact 100.0 1.5E-32 5.1E-37 258.4 14.9 159 288-451 2-174 (195)
15 1y5e_A Molybdenum cofactor bio 100.0 2.6E-33 8.9E-38 258.6 9.2 144 2-165 7-165 (169)
16 2pjk_A 178AA long hypothetical 100.0 4.3E-32 1.5E-36 252.2 16.3 155 286-447 12-177 (178)
17 3pzy_A MOG; ssgcid, seattle st 100.0 3.8E-33 1.3E-37 256.0 8.7 139 6-164 5-155 (164)
18 1y5e_A Molybdenum cofactor bio 100.0 4.1E-31 1.4E-35 243.9 17.8 155 285-448 9-168 (169)
19 2pbq_A Molybdenum cofactor bio 100.0 4.1E-31 1.4E-35 245.8 16.2 154 288-447 4-160 (178)
20 3iwt_A 178AA long hypothetical 100.0 7E-31 2.4E-35 244.3 17.0 156 287-447 13-177 (178)
21 1mkz_A Molybdenum cofactor bio 100.0 4.3E-32 1.5E-36 251.1 7.9 146 6-166 8-162 (172)
22 1uuy_A CNX1, molybdopterin bio 100.0 1.1E-31 3.9E-36 247.2 8.1 141 6-165 3-161 (167)
23 2is8_A Molybdopterin biosynthe 100.0 4.5E-31 1.5E-35 242.4 10.0 139 8-165 1-152 (164)
24 2pbq_A Molybdenum cofactor bio 100.0 1.6E-30 5.5E-35 241.8 10.8 141 7-167 4-163 (178)
25 1mkz_A Molybdenum cofactor bio 100.0 1.6E-29 5.6E-34 233.8 16.1 147 285-440 6-156 (172)
26 2g2c_A Putative molybdenum cof 100.0 9.4E-31 3.2E-35 241.0 5.6 141 8-164 5-162 (167)
27 1uz5_A MOEA protein, 402AA lon 100.0 1.1E-29 3.9E-34 263.7 11.4 169 235-444 148-324 (402)
28 1g8l_A Molybdopterin biosynthe 100.0 2E-29 6.8E-34 262.6 11.2 170 235-445 145-322 (411)
29 1di6_A MOGA, molybdenum cofact 100.0 5.2E-29 1.8E-33 234.3 7.2 140 7-164 2-167 (195)
30 3iwt_A 178AA long hypothetical 100.0 2.2E-28 7.5E-33 227.4 11.1 156 4-164 11-174 (178)
31 2fts_A Gephyrin; gephyrin, neu 100.0 7.2E-29 2.5E-33 259.3 8.5 172 233-444 147-331 (419)
32 3kbq_A Protein TA0487; structu 99.9 2.4E-27 8.2E-32 218.0 15.0 144 289-439 3-168 (172)
33 1wu2_A MOEA protein, molybdopt 99.9 1.1E-26 3.8E-31 240.8 6.2 161 235-444 150-320 (396)
34 3kbq_A Protein TA0487; structu 99.9 4.5E-22 1.5E-26 182.9 14.3 138 8-159 3-168 (172)
35 3l4e_A Uncharacterized peptida 89.3 0.53 1.8E-05 43.7 6.0 75 8-102 27-101 (206)
36 1ccw_A Protein (glutamate muta 86.9 2.6 9E-05 36.1 8.6 63 8-87 3-65 (137)
37 3p2y_A Alanine dehydrogenase/p 85.9 15 0.0005 37.3 14.7 122 37-163 195-355 (381)
38 2yxb_A Coenzyme B12-dependent 84.8 1.7 5.7E-05 38.6 6.4 77 7-101 17-93 (161)
39 1y80_A Predicted cobalamin bin 83.7 3.1 0.00011 38.2 8.0 77 7-101 87-163 (210)
40 4dio_A NAD(P) transhydrogenase 81.6 25 0.00086 35.8 14.5 92 67-163 267-365 (405)
41 2i2x_B MTAC, methyltransferase 81.5 8.6 0.00029 36.6 10.5 77 7-101 122-198 (258)
42 1yqw_A Periplasmic [NIFE] hydr 72.0 0.96 3.3E-05 43.7 0.6 130 6-156 4-160 (264)
43 1wl8_A GMP synthase [glutamine 70.3 14 0.00049 32.8 8.2 46 35-88 10-55 (189)
44 1fy2_A Aspartyl dipeptidase; s 69.7 4.2 0.00014 38.0 4.6 61 7-87 30-90 (229)
45 2vvp_A Ribose-5-phosphate isom 69.5 4.7 0.00016 35.9 4.5 100 314-436 21-128 (162)
46 3l4e_A Uncharacterized peptida 68.9 5.8 0.0002 36.6 5.2 63 288-364 26-88 (206)
47 2vvp_A Ribose-5-phosphate isom 66.7 6.5 0.00022 34.9 4.8 50 40-89 20-74 (162)
48 3ph3_A Ribose-5-phosphate isom 66.4 8.7 0.0003 34.3 5.6 100 313-435 37-140 (169)
49 3ezx_A MMCP 1, monomethylamine 66.2 10 0.00036 35.0 6.4 78 7-101 91-169 (215)
50 3en0_A Cyanophycinase; serine 64.4 5 0.00017 39.1 4.0 65 8-87 56-121 (291)
51 2vvr_A Ribose-5-phosphate isom 64.0 8.2 0.00028 33.8 4.9 101 313-436 18-125 (149)
52 2vpi_A GMP synthase; guanine m 62.8 13 0.00044 34.3 6.4 54 9-87 25-78 (218)
53 1o1x_A Ribose-5-phosphate isom 62.7 9.5 0.00032 33.6 5.0 51 39-89 28-82 (155)
54 3lm8_A Thiamine pyrophosphokin 62.4 5.9 0.0002 37.0 4.0 65 35-101 53-117 (222)
55 2vvr_A Ribose-5-phosphate isom 62.1 9 0.00031 33.5 4.8 51 39-89 17-71 (149)
56 1wl8_A GMP synthase [glutamine 61.4 29 0.00099 30.7 8.4 59 308-380 10-68 (189)
57 3ph3_A Ribose-5-phosphate isom 58.7 12 0.00041 33.4 5.0 50 40-89 37-90 (169)
58 1ccw_A Protein (glutamate muta 58.5 29 0.001 29.4 7.5 63 289-366 3-65 (137)
59 3k94_A Thiamin pyrophosphokina 58.2 6.4 0.00022 36.8 3.4 65 35-101 52-116 (223)
60 2ppw_A Conserved domain protei 57.8 10 0.00034 35.3 4.5 51 39-89 23-80 (216)
61 3he8_A Ribose-5-phosphate isom 57.8 13 0.00044 32.5 5.0 50 40-89 17-70 (149)
62 2xed_A Putative maleate isomer 57.1 50 0.0017 31.4 9.7 65 38-102 160-233 (273)
63 3s99_A Basic membrane lipoprot 57.0 14 0.00048 36.8 5.9 64 287-363 24-94 (356)
64 1yzf_A Lipase/acylhydrolase; s 56.5 16 0.00054 31.5 5.6 73 294-366 4-78 (195)
65 3bul_A Methionine synthase; tr 56.2 17 0.00057 38.9 6.6 77 7-101 97-173 (579)
66 1ivn_A Thioesterase I; hydrola 56.1 21 0.00071 31.1 6.4 83 293-380 3-87 (190)
67 1qdl_B Protein (anthranilate s 55.1 21 0.00071 32.0 6.3 47 35-88 11-57 (195)
68 2xij_A Methylmalonyl-COA mutas 54.9 16 0.00056 40.2 6.4 77 7-101 603-679 (762)
69 4em8_A Ribose 5-phosphate isom 54.6 4.2 0.00014 35.6 1.3 49 40-89 24-76 (148)
70 3ono_A Ribose/galactose isomer 54.3 14 0.00049 34.2 4.9 50 40-89 24-79 (214)
71 1xrs_B D-lysine 5,6-aminomutas 54.0 11 0.00037 36.2 4.3 77 7-100 119-206 (262)
72 3fij_A LIN1909 protein; 11172J 53.8 16 0.00054 34.5 5.4 38 43-87 35-72 (254)
73 3c5y_A Ribose/galactose isomer 53.5 13 0.00046 34.7 4.6 50 40-89 40-96 (231)
74 3ihk_A Thiamin pyrophosphokina 52.9 11 0.00039 34.9 4.2 66 34-101 46-112 (218)
75 1req_A Methylmalonyl-COA mutas 52.9 16 0.00056 40.0 6.0 77 7-101 595-671 (727)
76 1i1q_B Anthranilate synthase c 52.5 21 0.00071 31.9 5.8 60 35-98 10-70 (192)
77 3rgw_S Membrane-bound hydrogen 52.4 7.7 0.00026 38.6 3.0 115 34-156 25-162 (339)
78 1qdl_B Protein (anthranilate s 51.9 74 0.0025 28.2 9.5 50 308-370 11-60 (195)
79 3s5p_A Ribose 5-phosphate isom 51.9 17 0.00057 32.4 4.8 55 35-89 29-91 (166)
80 2rir_A Dipicolinate synthase, 51.6 39 0.0013 32.4 8.0 113 37-163 168-295 (300)
81 1o1x_A Ribose-5-phosphate isom 51.5 14 0.00048 32.5 4.2 110 308-436 20-136 (155)
82 3sgw_A Ribose 5-phosphate isom 51.2 27 0.00093 31.5 6.1 107 308-433 37-150 (184)
83 3ixl_A Amdase, arylmalonate de 51.1 99 0.0034 28.7 10.5 77 9-102 118-205 (240)
84 3rjt_A Lipolytic protein G-D-S 50.6 23 0.00079 31.1 5.8 72 293-365 10-93 (216)
85 3hp4_A GDSL-esterase; psychrot 49.8 18 0.00061 31.2 4.8 70 293-365 4-76 (185)
86 3ayx_B Membrane-bound hydrogen 49.1 7.1 0.00024 37.9 2.1 118 34-156 31-171 (283)
87 3s99_A Basic membrane lipoprot 49.0 19 0.00064 35.9 5.3 43 41-84 50-94 (356)
88 3l8m_A Probable thiamine pyrop 48.7 8.4 0.00029 35.6 2.5 65 34-101 49-113 (212)
89 2vpt_A Lipolytic enzyme; ester 47.3 44 0.0015 29.7 7.2 70 291-365 5-93 (215)
90 1xmp_A PURE, phosphoribosylami 47.0 69 0.0023 28.5 8.0 84 7-112 10-98 (170)
91 1i1q_B Anthranilate synthase c 46.9 55 0.0019 29.0 7.7 61 309-379 11-72 (192)
92 2bdq_A Copper homeostasis prot 46.7 22 0.00074 33.2 4.9 49 39-88 107-158 (224)
93 3k7p_A Ribose 5-phosphate isom 45.7 20 0.0007 32.2 4.4 51 39-89 38-94 (179)
94 3he8_A Ribose-5-phosphate isom 45.7 19 0.00066 31.4 4.1 109 308-435 8-120 (149)
95 2dgd_A 223AA long hypothetical 44.7 1E+02 0.0035 27.9 9.4 77 9-102 109-196 (223)
96 1l7d_A Nicotinamide nucleotide 44.6 2.1E+02 0.0073 28.2 12.5 84 69-163 251-347 (384)
97 3s5p_A Ribose 5-phosphate isom 43.1 20 0.00069 31.9 3.9 60 308-368 29-91 (166)
98 3mel_A Thiamin pyrophosphokina 43.0 13 0.00043 34.7 2.8 66 34-101 50-116 (222)
99 1y80_A Predicted cobalamin bin 42.7 48 0.0017 29.9 6.7 65 288-367 87-151 (210)
100 3uqy_S Hydrogenase-1 small cha 42.7 12 0.00041 37.2 2.6 115 33-155 24-161 (335)
101 2q5c_A NTRC family transcripti 42.4 28 0.00094 31.6 4.9 44 39-86 18-61 (196)
102 1l9x_A Gamma-glutamyl hydrolas 42.1 16 0.00055 35.8 3.5 72 7-90 29-101 (315)
103 3a9s_A D-arabinose isomerase; 41.5 23 0.00078 38.0 4.7 68 6-82 9-90 (595)
104 3s4y_A Thiamin pyrophosphokina 41.3 27 0.00094 33.0 4.9 65 34-101 76-146 (247)
105 3g1w_A Sugar ABC transporter; 41.2 45 0.0015 31.1 6.5 48 39-86 24-71 (305)
106 2yxb_A Coenzyme B12-dependent 41.0 48 0.0017 28.9 6.2 74 288-381 17-90 (161)
107 3sgw_A Ribose 5-phosphate isom 40.7 23 0.00078 32.0 3.9 55 35-89 37-102 (184)
108 2vpi_A GMP synthase; guanine m 40.5 35 0.0012 31.3 5.4 54 290-366 25-78 (218)
109 2i2x_B MTAC, methyltransferase 40.3 1.2E+02 0.004 28.5 9.3 76 288-379 122-197 (258)
110 2ppw_A Conserved domain protei 40.0 26 0.00088 32.5 4.3 101 313-436 24-138 (216)
111 4h08_A Putative hydrolase; GDS 38.9 35 0.0012 29.9 5.0 65 289-366 20-85 (200)
112 3mil_A Isoamyl acetate-hydroly 38.9 87 0.003 27.7 7.9 86 293-380 5-101 (240)
113 2vhw_A Alanine dehydrogenase; 38.0 3E+02 0.01 27.0 12.7 77 37-114 179-272 (377)
114 3myr_A Hydrogenase (NIFE) smal 37.8 12 0.00043 35.9 1.8 114 34-155 22-159 (269)
115 3fij_A LIN1909 protein; 11172J 37.4 53 0.0018 30.7 6.3 40 314-366 33-72 (254)
116 4gud_A Imidazole glycerol phos 37.0 79 0.0027 28.2 7.2 37 36-85 13-49 (211)
117 3c5y_A Ribose/galactose isomer 36.4 35 0.0012 31.9 4.5 51 313-368 40-96 (231)
118 3jtm_A Formate dehydrogenase, 36.4 1.4E+02 0.0049 29.4 9.5 66 36-102 174-247 (351)
119 1fy2_A Aspartyl dipeptidase; s 36.1 20 0.00069 33.3 3.0 61 288-366 30-90 (229)
120 3lp6_A Phosphoribosylaminoimid 35.2 1.5E+02 0.0053 26.3 8.4 86 7-114 6-96 (174)
121 2i0f_A 6,7-dimethyl-8-ribityll 35.2 43 0.0015 29.5 4.7 75 43-123 36-119 (157)
122 2v4u_A CTP synthase 2; pyrimid 34.6 56 0.0019 31.4 6.0 13 355-367 90-102 (289)
123 3ono_A Ribose/galactose isomer 34.0 39 0.0013 31.2 4.4 51 313-368 24-79 (214)
124 1di0_A Lumazine synthase; tran 33.9 19 0.00063 31.8 2.2 75 44-123 35-115 (158)
125 3k7p_A Ribose 5-phosphate isom 33.6 27 0.00094 31.4 3.2 100 313-435 39-144 (179)
126 3ors_A N5-carboxyaminoimidazol 33.2 1.6E+02 0.0055 25.9 8.1 86 7-114 2-92 (163)
127 3bfj_A 1,3-propanediol oxidore 33.2 30 0.001 34.6 4.0 52 38-89 52-105 (387)
128 1rrm_A Lactaldehyde reductase; 32.8 27 0.00091 35.0 3.5 51 39-89 49-101 (386)
129 1o2d_A Alcohol dehydrogenase, 32.8 33 0.0011 34.2 4.2 50 39-88 59-110 (371)
130 3m9w_A D-xylose-binding peripl 32.7 86 0.003 29.3 7.0 48 38-86 21-68 (313)
131 2c92_A 6,7-dimethyl-8-ribityll 32.6 15 0.0005 32.6 1.3 74 44-123 42-118 (160)
132 3oow_A Phosphoribosylaminoimid 32.6 1.9E+02 0.0065 25.5 8.5 85 8-114 5-94 (166)
133 1s1m_A CTP synthase; CTP synth 32.3 8.7 0.0003 40.8 -0.3 55 58-113 116-178 (545)
134 2obx_A DMRL synthase 1, 6,7-di 32.1 21 0.00072 31.4 2.2 75 44-123 36-116 (157)
135 2ywd_A Glutamine amidotransfer 32.0 48 0.0017 29.1 4.8 48 8-86 2-49 (191)
136 3cq9_A Uncharacterized protein 31.9 13 0.00045 34.7 0.9 65 35-101 52-117 (227)
137 1c2y_A Protein (lumazine synth 31.1 23 0.00079 31.2 2.3 75 44-123 38-117 (156)
138 1vjg_A Putative lipase from th 31.1 1.1E+02 0.0036 27.0 7.0 74 289-365 18-98 (218)
139 3bzw_A Putative lipase; protei 31.0 41 0.0014 31.4 4.3 67 293-365 28-98 (274)
140 1cc1_S Hydrogenase (small subu 30.9 29 0.001 33.5 3.2 57 34-91 26-85 (283)
141 3n0v_A Formyltetrahydrofolate 30.9 34 0.0012 33.1 3.7 80 7-86 89-176 (286)
142 3pef_A 6-phosphogluconate dehy 30.8 63 0.0021 30.5 5.6 47 37-84 12-65 (287)
143 3lkv_A Uncharacterized conserv 30.3 1.1E+02 0.0038 29.0 7.3 50 35-84 23-77 (302)
144 3lou_A Formyltetrahydrofolate 29.3 34 0.0012 33.2 3.4 76 7-85 94-180 (292)
145 3doj_A AT3G25530, dehydrogenas 29.2 40 0.0014 32.4 4.0 63 283-362 15-84 (310)
146 2h78_A Hibadh, 3-hydroxyisobut 29.1 73 0.0025 30.2 5.8 69 8-99 3-78 (302)
147 3trh_A Phosphoribosylaminoimid 29.1 2.3E+02 0.0079 25.0 8.4 84 7-112 5-93 (169)
148 3kuu_A Phosphoribosylaminoimid 29.0 2.1E+02 0.007 25.5 8.1 83 8-112 12-99 (174)
149 1o4v_A Phosphoribosylaminoimid 28.9 2.3E+02 0.0079 25.4 8.5 83 8-112 13-100 (183)
150 1ass_A Thermosome; chaperonin, 28.8 67 0.0023 28.0 5.0 44 61-108 57-100 (159)
151 3p2y_A Alanine dehydrogenase/p 28.8 3.4E+02 0.012 27.1 10.8 75 345-429 257-336 (381)
152 1pjc_A Protein (L-alanine dehy 28.6 4.2E+02 0.014 25.8 11.9 78 37-115 178-272 (361)
153 4dll_A 2-hydroxy-3-oxopropiona 28.4 66 0.0022 31.1 5.4 58 9-85 32-96 (320)
154 1u2m_A Histone-like protein HL 28.2 39 0.0013 28.7 3.3 40 341-380 100-142 (143)
155 1gpm_A GMP synthetase, XMP ami 28.1 1.6E+02 0.0055 30.7 8.6 55 8-87 7-61 (525)
156 3ixl_A Amdase, arylmalonate de 28.0 3.6E+02 0.012 24.8 10.3 81 290-385 118-208 (240)
157 3ox4_A Alcohol dehydrogenase 2 27.9 98 0.0034 30.9 6.7 50 39-88 49-100 (383)
158 4grd_A N5-CAIR mutase, phospho 27.8 2.3E+02 0.008 25.1 8.2 84 7-112 11-99 (173)
159 3d4o_A Dipicolinate synthase s 27.8 2.1E+02 0.0073 26.9 8.9 104 37-154 166-280 (293)
160 3l7n_A Putative uncharacterize 27.8 90 0.0031 28.7 6.0 62 312-386 15-86 (236)
161 2h3h_A Sugar ABC transporter, 27.7 99 0.0034 29.0 6.5 46 41-86 22-67 (313)
162 3ksm_A ABC-type sugar transpor 27.7 77 0.0026 28.8 5.6 49 38-86 19-69 (276)
163 1x13_A NAD(P) transhydrogenase 27.7 4E+02 0.014 26.5 11.3 47 68-115 248-297 (401)
164 2d00_A V-type ATP synthase sub 27.3 54 0.0018 26.8 3.8 35 327-365 22-56 (109)
165 3doj_A AT3G25530, dehydrogenas 27.3 79 0.0027 30.3 5.7 59 7-84 20-85 (310)
166 3o74_A Fructose transport syst 27.3 3E+02 0.01 24.5 9.7 65 39-106 22-87 (272)
167 1vlj_A NADH-dependent butanol 27.2 91 0.0031 31.4 6.4 50 39-88 62-113 (407)
168 2eez_A Alanine dehydrogenase; 27.2 4.2E+02 0.014 25.8 11.3 65 37-102 177-257 (369)
169 1u2m_A Histone-like protein HL 27.1 56 0.0019 27.6 4.1 38 65-102 102-143 (143)
170 3nq4_A 6,7-dimethyl-8-ribityll 27.0 27 0.00091 30.8 2.0 75 44-123 37-118 (156)
171 2qv7_A Diacylglycerol kinase D 26.7 78 0.0027 30.8 5.6 56 39-101 45-100 (337)
172 2nrr_A Uvrabc system protein C 26.7 29 0.00099 30.6 2.1 49 59-110 60-112 (159)
173 3m9w_A D-xylose-binding peripl 26.6 2.9E+02 0.01 25.5 9.7 59 314-383 24-82 (313)
174 2fqx_A Membrane lipoprotein TM 26.4 96 0.0033 29.6 6.2 61 289-363 4-70 (318)
175 3pp8_A Glyoxylate/hydroxypyruv 26.3 85 0.0029 30.6 5.7 65 36-101 149-219 (315)
176 2a9v_A GMP synthase; structura 25.8 24 0.00081 32.2 1.5 51 8-85 13-63 (212)
177 3giu_A Pyrrolidone-carboxylate 25.7 86 0.0029 28.9 5.3 80 293-378 5-84 (215)
178 3l6u_A ABC-type sugar transpor 25.7 1.6E+02 0.0054 26.9 7.5 67 7-85 7-73 (293)
179 3uqy_S Hydrogenase-1 small cha 25.7 61 0.0021 32.1 4.5 128 306-439 24-164 (335)
180 2hqb_A Transcriptional activat 25.7 1.1E+02 0.0039 28.7 6.5 44 40-84 28-71 (296)
181 3myr_A Hydrogenase (NIFE) smal 25.7 56 0.0019 31.3 4.1 127 307-439 22-162 (269)
182 3jy6_A Transcriptional regulat 25.7 2.3E+02 0.0078 25.7 8.5 48 39-87 27-74 (276)
183 1yqw_A Periplasmic [NIFE] hydr 25.6 20 0.00067 34.4 0.9 140 288-440 5-163 (264)
184 1jq5_A Glycerol dehydrogenase; 25.6 51 0.0018 32.7 4.1 49 40-89 49-99 (370)
185 1fui_A L-fucose isomerase; ket 25.5 45 0.0015 35.7 3.8 67 7-82 5-85 (591)
186 1x10_A Pyrrolidone-carboxylate 25.5 77 0.0026 29.0 4.9 79 294-377 3-81 (208)
187 2fqx_A Membrane lipoprotein TM 25.4 87 0.003 29.9 5.6 44 40-85 28-71 (318)
188 3lm8_A Thiamine pyrophosphokin 25.0 45 0.0015 30.9 3.3 66 308-381 53-118 (222)
189 3ce9_A Glycerol dehydrogenase; 24.6 37 0.0013 33.5 2.8 50 39-89 51-101 (354)
190 1gml_A T-complex protein 1 sub 24.5 87 0.003 27.7 5.0 44 61-108 63-106 (178)
191 3d02_A Putative LACI-type tran 24.5 1.1E+02 0.0037 28.3 6.0 46 40-85 25-70 (303)
192 3bzw_A Putative lipase; protei 24.4 56 0.0019 30.4 3.9 70 10-86 26-98 (274)
193 3uug_A Multiple sugar-binding 24.4 1.1E+02 0.0037 28.8 6.1 48 38-86 22-69 (330)
194 2wpn_A Periplasmic [nifese] hy 24.3 29 0.001 34.1 1.9 55 35-90 61-118 (317)
195 4dio_A NAD(P) transhydrogenase 24.1 5.6E+02 0.019 25.7 12.2 89 344-442 266-364 (405)
196 1l9x_A Gamma-glutamyl hydrolas 23.9 82 0.0028 30.6 5.1 67 287-365 28-96 (315)
197 2qv3_A VACA, vacuolating cytot 23.6 12 0.00042 36.3 -0.9 69 78-146 162-250 (457)
198 2hqb_A Transcriptional activat 23.6 1E+02 0.0034 29.1 5.6 42 315-363 30-71 (296)
199 2gcg_A Glyoxylate reductase/hy 23.5 2.6E+02 0.0088 27.0 8.7 64 37-101 166-236 (330)
200 3h75_A Periplasmic sugar-bindi 23.4 1.8E+02 0.0062 27.6 7.6 67 7-84 2-70 (350)
201 3pdu_A 3-hydroxyisobutyrate de 23.3 86 0.003 29.5 5.1 47 38-85 13-66 (287)
202 3egc_A Putative ribose operon 23.2 2.3E+02 0.0079 25.8 8.1 48 39-87 28-75 (291)
203 4em8_A Ribose 5-phosphate isom 23.2 23 0.00078 30.9 0.8 107 308-435 15-126 (148)
204 4a7p_A UDP-glucose dehydrogena 23.1 2.6E+02 0.0088 28.5 8.9 45 288-337 321-365 (446)
205 3l86_A Acetylglutamate kinase; 22.9 1.3E+02 0.0046 28.7 6.3 53 30-85 154-215 (279)
206 3en0_A Cyanophycinase; serine 22.9 29 0.001 33.6 1.6 61 288-365 55-120 (291)
207 3i9v_6 NADH-quinone oxidoreduc 22.8 43 0.0015 30.1 2.5 76 76-164 74-160 (181)
208 2gp4_A 6-phosphogluconate dehy 22.8 33 0.0011 36.7 2.1 103 3-116 80-206 (628)
209 1a9x_B Carbamoyl phosphate syn 22.8 2.2E+02 0.0074 28.5 8.1 73 289-386 190-263 (379)
210 1tjy_A Sugar transport protein 22.7 1.2E+02 0.004 28.7 5.9 47 39-85 23-69 (316)
211 3lot_A Uncharacterized protein 22.4 71 0.0024 31.3 4.3 72 9-87 8-91 (314)
212 2yy8_A ATRM56, UPF0106 protein 22.4 1.6E+02 0.0055 26.6 6.1 46 42-87 67-112 (201)
213 8abp_A L-arabinose-binding pro 22.3 88 0.003 29.0 4.9 45 39-85 22-66 (306)
214 3k94_A Thiamin pyrophosphokina 21.9 48 0.0016 30.7 2.8 65 308-380 52-116 (223)
215 3qha_A Putative oxidoreductase 21.8 1.1E+02 0.0037 29.1 5.5 70 8-101 15-91 (296)
216 3kp1_A D-ornithine aminomutase 21.7 53 0.0018 35.5 3.3 89 7-112 601-703 (763)
217 3h5l_A Putative branched-chain 21.6 65 0.0022 31.8 3.9 47 38-84 181-227 (419)
218 3cky_A 2-hydroxymethyl glutara 21.4 1E+02 0.0034 29.0 5.1 30 8-55 4-33 (301)
219 3dtt_A NADP oxidoreductase; st 21.3 99 0.0034 28.4 4.9 33 7-57 18-50 (245)
220 4e5n_A Thermostable phosphite 21.3 1.4E+02 0.0049 29.1 6.3 65 36-101 155-226 (330)
221 3dci_A Arylesterase; SGNH_hydr 21.3 74 0.0025 28.6 4.0 82 293-380 25-128 (232)
222 4e12_A Diketoreductase; oxidor 21.2 1.2E+02 0.0041 28.5 5.6 31 37-67 15-45 (283)
223 1rvv_A Riboflavin synthase; tr 21.1 39 0.0013 29.6 1.9 75 44-123 37-117 (154)
224 2iss_D Glutamine amidotransfer 21.0 1.2E+02 0.004 27.2 5.3 49 287-364 18-66 (208)
225 3rgw_S Membrane-bound hydrogen 20.9 1.8E+02 0.006 28.8 6.7 143 288-439 5-164 (339)
226 3aon_B V-type sodium ATPase su 20.7 1E+02 0.0035 25.4 4.3 31 327-362 21-51 (115)
227 1yq9_A Periplasmic [NIFE] hydr 20.7 26 0.00089 33.6 0.7 71 6-90 4-80 (264)
228 3gg2_A Sugar dehydrogenase, UD 20.6 2E+02 0.0069 29.3 7.5 65 288-361 317-391 (450)
229 3rot_A ABC sugar transporter, 20.6 1.7E+02 0.0057 27.1 6.5 47 39-85 23-70 (297)
230 3lft_A Uncharacterized protein 20.4 1.8E+02 0.006 27.0 6.6 46 39-84 21-70 (295)
231 3m3p_A Glutamine amido transfe 20.4 2.8E+02 0.0096 25.8 7.9 50 309-371 15-64 (250)
232 3ldh_A Lactate dehydrogenase; 20.4 2.5E+02 0.0086 27.4 7.8 12 76-87 89-100 (330)
233 1a2z_A Pyrrolidone carboxyl pe 20.3 1.5E+02 0.0051 27.4 5.8 79 294-377 4-82 (220)
234 1wwk_A Phosphoglycerate dehydr 20.2 3.7E+02 0.013 25.7 9.0 57 36-94 152-214 (307)
235 2e4u_A Metabotropic glutamate 20.1 2.1E+02 0.0071 29.6 7.7 64 290-363 187-252 (555)
236 2fn9_A Ribose ABC transporter, 20.1 2.3E+02 0.0077 25.8 7.3 45 40-85 23-67 (290)
237 2nrt_A Uvrabc system protein C 20.0 47 0.0016 30.9 2.3 49 59-110 65-117 (220)
No 1
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=100.00 E-value=7.4e-51 Score=423.98 Aligned_cols=238 Identities=35% Similarity=0.537 Sum_probs=223.4
Q ss_pred CeeeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEE
Q 011276 1 MMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDIL 80 (489)
Q Consensus 1 ~~V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlv 80 (489)
.+|+|||+|||+||+|||||++|+++ +.+|||+|+|+++|.++|+++|+++..+++++||+++|+++|+++++ ++|+|
T Consensus 170 ~~V~V~~~~rv~iistGdEl~~~g~~-~~~G~i~dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~-~~Dlv 247 (411)
T 1g8l_A 170 AEVPVIRKVRVALFSTGDELQLPGQP-LGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADS-QADVV 247 (411)
T ss_dssp CEEEEECCCEEEEEEECTTEECTTSC-CCSSCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHH-HCSEE
T ss_pred ceEEecCCCEEEEEEcCccccCCCCC-CCCCcEEcCchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhh-cCCEE
Confidence 47999999999999999999999998 89999999999999999999999999999999999999999999987 49999
Q ss_pred EEeCCCcCCCCCchHHHHHhcCCeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHHH
Q 011276 81 LTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAIR 160 (489)
Q Consensus 81 ittGG~s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~ 160 (489)
|||||+|+|++|+|+++++++|+++||+++|+||||+++|.++ +++||+|||||.|++++|+.|+.|+|+
T Consensus 248 ittGG~s~g~~D~t~~al~~~G~i~f~~va~~PG~p~~~g~~~----------~~~v~~LPGnP~sa~~~~~~~v~P~L~ 317 (411)
T 1g8l_A 248 ISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLS----------NSWFCGLPGNPVSATLTFYQLVQPLLA 317 (411)
T ss_dssp EECSSSCSSSCSHHHHHHHHHSEEEEEEBSEESCCEEEEEECS----------SSEEEECCSSHHHHHHHHHHTHHHHHH
T ss_pred EECCCCCCCCcccHHHHHHhcCcEEEEEEEeeCCCcEEEEEEC----------CEEEEEcCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986 489999999999999999999999999
Q ss_pred HhcCCCC-CCCceEEEEEcCCCCCCCCCceEEEEEEEEeeCCCCCccceEEEecCCCCchhhhhhhcCCEEEEcCCCCcc
Q 011276 161 HLSGWAN-PHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLELPATGSV 239 (489)
Q Consensus 161 ~l~G~~~-~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~g~~~~~~~~~p~~~~~s~~l~sl~~an~l~~ip~g~~~ 239 (489)
+++|... ..++.++|+++++++++.+|++|+|+++.+. .+|. +++.|++.|+|+++++|++||||+++|++.+.
T Consensus 318 ~l~g~~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~l~~~-~~g~----~~~~p~~~~~S~~l~sl~~Ad~li~ip~~~~~ 392 (411)
T 1g8l_A 318 KLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRN-ADGE----LEVTTTGHQGSHIFSSFSLGNCFIVLERDRGN 392 (411)
T ss_dssp HHHTCCCCSCSCCEEEEESSCBCCCTTSEEEEEEEEEEC-TTSC----EEEEECSCCCTTCCTHHHHCSEEEEECTTCCC
T ss_pred HHhCCCccCCCceEEEEccccccCCCCceEEEEEEEEEc-cCCe----EEEEECCCCCcHHHHHHHHCCEEEEECCCCCc
Confidence 9999775 4556789999999999999999999999652 4565 78999998999999999999999999999999
Q ss_pred ccCCcEEEEEEecccc
Q 011276 240 ISAGTLVSAIVISDIS 255 (489)
Q Consensus 240 i~~G~~V~v~ll~~l~ 255 (489)
+++|+.|++++|..+.
T Consensus 393 ~~~G~~V~v~~~~~~~ 408 (411)
T 1g8l_A 393 VEVGEWVEVEPFNALF 408 (411)
T ss_dssp BCTTCEEEEEECCGGG
T ss_pred CCCCCEEEEEEchHhh
Confidence 9999999999997653
No 2
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=100.00 E-value=2.8e-49 Score=413.55 Aligned_cols=241 Identities=44% Similarity=0.727 Sum_probs=218.4
Q ss_pred CeeeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEE
Q 011276 1 MMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDIL 80 (489)
Q Consensus 1 ~~V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlv 80 (489)
.+|+|||+|||+||+|||||++|+++ +.+|||+|+|+++|.++|+++|+++..+++++||+++|+++|++++++ +|+|
T Consensus 174 ~~v~V~~~prv~IistGdEl~~~g~~-~~~G~i~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~-~DlV 251 (419)
T 2fts_A 174 TEVEVNKFPVVAVMSTGNELLNPEDD-LLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISR-ADVI 251 (419)
T ss_dssp CEEEEECCCCEEEEEECTTEECTTSC-CCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHH-CSEE
T ss_pred CeeEecCCCEEEEEEechhccCCCCC-CCCCcEecCchHHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhc-CCEE
Confidence 47999999999999999999999998 899999999999999999999999999999999999999999999985 9999
Q ss_pred EEeCCCcCCCCCchHHHH-HhcC-CeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHH
Q 011276 81 LTSGGVSMGDKDFVKPLL-QKKG-TIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPA 158 (489)
Q Consensus 81 ittGG~s~G~~D~~~~~l-~~~G-~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~ 158 (489)
|||||+|+|++|+|++++ +++| +++||+++||||||+++|..... .++++||+|||||.|++++|+.|+.|+
T Consensus 252 ittGG~s~g~~D~t~~al~~~lg~~~~f~~v~~~PG~p~~~g~~~~~------~~~~~v~~LPG~P~sa~~~~~~~v~P~ 325 (419)
T 2fts_A 252 ITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDID------GVRKIIFALPGNPVSAVVTCNLFVVPA 325 (419)
T ss_dssp EEESCCSSSCCHHHHHHHHTTTCCEEEESEEECBSCTTCEEEEEEET------TEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEcCCCcCCCcccHHHHHHHHcCCceEEeEEecCCCCceEEEEEeec------CCCeEEEECCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999 6887 89999999999999999987410 014899999999999999999999999
Q ss_pred HHHhcCCCCCCCceEEEEEcCCCCCCCCCceEEEEEEEEeeCCCCCccceEEEecCCCCchhhhhhhcCCEEEEcC---C
Q 011276 159 IRHLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLELP---A 235 (489)
Q Consensus 159 L~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~g~~~~~~~~~p~~~~~s~~l~sl~~an~l~~ip---~ 235 (489)
|++|+|.....++.++|+++++++++. |++|+|+++.+. +++. . +++.|.+.|+|+++++|++||||+++| +
T Consensus 326 L~~~~g~~~~~~~~~~a~l~~~~~~~~-r~~f~r~~l~~~-~~~~-~--~~~~~~~~~~S~~l~sl~~An~li~ip~~~~ 400 (419)
T 2fts_A 326 LRKMQGILDPRPTIIKARLSCDVKLDP-RPEYHRCILTWH-HQEP-L--PWAQSTGNQMSSRLMSMRSANGLLMLPPKTE 400 (419)
T ss_dssp HHHHTTCSSCCCCEEEEEESSCEECCS-SCEEEEEEEECC-TTCS-S--CEEEECCSCSSSCCCCSSCCCEEEEECCCCS
T ss_pred HHHhcCCCCCCccceEEEeCCCcCCCC-ceEEEEEEEEEc-CCce-e--EEEEeCCCCCcHHHHHHHHCcEEEEECCccC
Confidence 999999876656788999999999988 999999999752 2221 1 567889999999999999999999999 5
Q ss_pred CCccccCCcEEEEEEeccc
Q 011276 236 TGSVISAGTLVSAIVISDI 254 (489)
Q Consensus 236 g~~~i~~G~~V~v~ll~~l 254 (489)
+.+.+++|+.|++++|+.+
T Consensus 401 ~~~~~~~G~~V~v~~~~~~ 419 (419)
T 2fts_A 401 QYVELHKGEVVDVMVIGRL 419 (419)
T ss_dssp SCSEECTTCEEEEEECSCC
T ss_pred CCCccCCCCEEEEEEeecC
Confidence 8888999999999998643
No 3
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=100.00 E-value=3.2e-49 Score=410.60 Aligned_cols=229 Identities=31% Similarity=0.491 Sum_probs=207.9
Q ss_pred CeeeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEE
Q 011276 1 MMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDIL 80 (489)
Q Consensus 1 ~~V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlv 80 (489)
.+|+|||+|||+||+|||||++|+++ +.+|||+|+|+++|.++|+++|+++..+++++||+++|+++|++++++ +|+|
T Consensus 173 ~~V~V~~~prv~IistGdEl~~~g~~-~~~G~i~DsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~-~DlV 250 (402)
T 1uz5_A 173 NKVKVFRKPKVAVISTGNEIVPPGNE-LKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNV-GDVV 250 (402)
T ss_dssp CEEEEECCCEEEEEEECTTEECTTSC-CCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHH-CSEE
T ss_pred ceeeecCCCEEEEEEcCccccCCCCC-CCCCcEEcchHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhC-CCEE
Confidence 47999999999999999999999997 899999999999999999999999999999999999999999999985 9999
Q ss_pred EEeCCCcCCCCCchHHHHHhcCCeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHHH
Q 011276 81 LTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAIR 160 (489)
Q Consensus 81 ittGG~s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~ 160 (489)
|||||+|+|++|+|+++++++|+++||+++|+||+|+++|.++ +++||+|||||.|++++|++|+.|+|+
T Consensus 251 ittGG~s~g~~D~t~~al~~~G~~~f~~va~~PG~p~~~g~~~----------~~~v~~LPG~P~sa~~~~~~~v~P~L~ 320 (402)
T 1uz5_A 251 VISGGASGGTKDLTASVIEELGEVKVHGIAIQPGKPTIIGVIK----------GKPVFGLPGYPTSCLTNFTLLVVPLLL 320 (402)
T ss_dssp EEECCC-----CHHHHHHHHHSEEEEECBSEESCTTCEEEEET----------TEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCCCCcccHHHHHHhhCCEEEeeEeecCCCCEEEEEEC----------CEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986 499999999999999999999999999
Q ss_pred HhcCCCCCCCceEEEEEcCCCCCCCCCceEEEEEEEEeeCCCCCccceEEEecCCCCchhhhhhhcCCEEEEcCCCCccc
Q 011276 161 HLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLELPATGSVI 240 (489)
Q Consensus 161 ~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~g~~~~~~~~~p~~~~~s~~l~sl~~an~l~~ip~g~~~i 240 (489)
+++|.... .+.++|+++++++++.+|++|+|+++ .+| ++.|+ .|+|+++++|++||||+++|++.+.+
T Consensus 321 ~~~g~~~~-~~~~~a~l~~~~~~~~~r~~f~r~~l----~~g------~~~p~-~~~S~~l~sl~~An~li~ip~~~~~~ 388 (402)
T 1uz5_A 321 RALGREGK-IGKKVARLKHKVFSVKGRRQFLPVKL----EGD------LAVPI-LKGSGAVTSFIDADGFVEIPETVESL 388 (402)
T ss_dssp HHTTCSSC-CCEEEEEESSCCBCC--CEEEEEEEE----SSS------EEEEC-CSTTCHHHHHHHCCEEEEECSSCCBC
T ss_pred HhcCCCCC-CceEEEEeCCcccCCCCCeEEEEEEE----eCC------EEEEc-CCCcHHHHHHHhCCEEEEECCCCCcC
Confidence 99997654 45789999999999999999999998 243 36778 58899999999999999999999999
Q ss_pred cCCcEEEEEEecc
Q 011276 241 SAGTLVSAIVISD 253 (489)
Q Consensus 241 ~~G~~V~v~ll~~ 253 (489)
++|+.|++++|..
T Consensus 389 ~~G~~V~v~~~~~ 401 (402)
T 1uz5_A 389 DEGEEVEVTLFKG 401 (402)
T ss_dssp CSEEEEEEEECCC
T ss_pred CCCCEEEEEEecC
Confidence 9999999999853
No 4
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=100.00 E-value=3.7e-46 Score=386.88 Aligned_cols=221 Identities=29% Similarity=0.464 Sum_probs=195.9
Q ss_pred CeeeeeeCCeEEEEecCCcCc-CCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCE
Q 011276 1 MMVKVYRTPTIAVLSTGDELV-EPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDI 79 (489)
Q Consensus 1 ~~V~V~r~prV~iistGdEl~-~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dl 79 (489)
.+|+|||+|||+||+|||||+ +|+++.+.+|||+|+|+++|.++|+++|+++..+++++||+++|+++|++++++ +|+
T Consensus 175 ~~V~V~~~prv~IistGdEl~~~~g~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~-~Dl 253 (396)
T 1wu2_A 175 KKVPVKVKPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNE-CDI 253 (396)
T ss_dssp SEEEEECCCEEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHC-SEE
T ss_pred ceeeecCCCEEEEEEcCcccccCCCCcccCCCcEecchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhC-CCE
Confidence 479999999999999999999 988632457999999999999999999999999999999999999999999984 999
Q ss_pred EEEeCCCcCCCCCchHHHHHhcCCeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHH
Q 011276 80 LLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAI 159 (489)
Q Consensus 80 vittGG~s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L 159 (489)
||||||+|+|++|+ ++++|+++||+++|+||+|+++| . +||+|||||.|++++|++|+.|+|
T Consensus 254 vittGG~s~g~~D~----l~~~G~i~f~~va~~PG~p~~~g--~------------~v~~LPG~P~sa~~~~~~~v~P~L 315 (396)
T 1wu2_A 254 VLITGGSAFGDKDY----AHKFVNLLFHGTTIKPGRPFGYG--E------------KVFIMSGYPVSVFAQFNLFVKHAL 315 (396)
T ss_dssp EECC--------CC----STTTCCCSEESBSEESCTTCEEE--T------------TEEECCSSHHHHHHHHHHTHHHHH
T ss_pred EEEeCCCCCChhhH----HhhcCCEEEeeecccCCCceEcc--C------------eEEECCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999 67789999999999999999998 2 599999999999999999999999
Q ss_pred HHhcCCCCCCCceEEEEEcCCCCCCCCCceEEEEEEEEeeCCCCCccceEEEecCCCCchhhhhhhcCCEEEEcCCCCcc
Q 011276 160 RHLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLELPATGSV 239 (489)
Q Consensus 160 ~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~g~~~~~~~~~p~~~~~s~~l~sl~~an~l~~ip~g~~~ 239 (489)
++|+|.... ++.++|+++++++++.+|++|+|+++. +| ++.|++.|+|+++++|++||||+++|++.+.
T Consensus 316 ~~l~g~~~~-~~~~~a~l~~~~~~~~~r~~f~r~~l~----~g------~~~p~~~~~S~~l~sl~~An~li~ip~~~~~ 384 (396)
T 1wu2_A 316 AKMVGAQNY-EVKVKAILQDDIPSQLGRYEFIKIYYE----NG------IARVIKKKGSGILSSLLASNAYLEIPEDSEG 384 (396)
T ss_dssp HHHHTCSSC-SCEEEEEESSCEECCTTCEEEEEEEEE----TT------EEEECCCCSSCCTHHHHSCCEEEEECTTCCE
T ss_pred HHhcCCCCC-CceEEEEeCCcccCCCCCeEEEEEEEE----CC------EEEECCCCCcHHHHHHHhCCEEEEECCCCCc
Confidence 999997654 457899999999999999999999984 33 3788888999999999999999999999999
Q ss_pred ccCCcEEEEEEe
Q 011276 240 ISAGTLVSAIVI 251 (489)
Q Consensus 240 i~~G~~V~v~ll 251 (489)
+++|+.|++++|
T Consensus 385 ~~~G~~V~v~~~ 396 (396)
T 1wu2_A 385 YRRGEEVWITLY 396 (396)
T ss_dssp ECTTCEEEEEEC
T ss_pred CCCCCEEEEEEC
Confidence 999999999875
No 5
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=100.00 E-value=1.8e-35 Score=277.48 Aligned_cols=170 Identities=45% Similarity=0.754 Sum_probs=150.0
Q ss_pred cccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEEEeCCcccCCCccCCchHHHHHHHHc---cccccCCcEE
Q 011276 254 ISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNS---SSEKLGGAKV 330 (489)
Q Consensus 254 l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~---~~~~~~G~~v 330 (489)
+++.|+.++.| ++++|++||+||||++.|++.|+|+++++++|++ . |+++
T Consensus 1 ~a~~g~~~v~v----------------------~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~-----G~~v 53 (189)
T 1jlj_A 1 MATEGMILTNH----------------------DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLL-----GGTI 53 (189)
T ss_dssp ----------------------------------CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTT-----CCEE
T ss_pred CCcCCcccccc----------------------cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcC-----CcEE
Confidence 46788899998 9999999999999999999999999999999998 7 9999
Q ss_pred EEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccccccHHHHHHhcccccCCCccccccce
Q 011276 331 VATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAA 410 (489)
Q Consensus 331 ~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~ 410 (489)
.++.+||||.++|+++|+++++..++|+||||||+|+|++|+|+||+++++++++||+.+.+++++++++|+++++|+++
T Consensus 54 ~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttGGtg~g~~D~t~eal~~~~~~~lpg~~~~~~~~~~~~~Pg~~lsr~~~ 133 (189)
T 1jlj_A 54 SAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVC 133 (189)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHHCSEECHHHHHHHHHHHHHHCGGGGGCCCCE
T ss_pred EEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCcccHHHHHHHHhccccccchhhheecccccCCCCccccceE
Confidence 99999999999999999999863479999999999999999999999999999999999999999999999999999999
Q ss_pred eEECCEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011276 411 GIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGDK 450 (489)
Q Consensus 411 g~~~~~~v~~LPG~P~a~~~~~~~ilp~l~~~~~~~~~~~ 450 (489)
|+.++++||+|||+|.++..+|+.++|.|.+++..+.+..
T Consensus 134 G~~~~~~v~~LPG~P~s~~~~~~~v~P~L~~~~~~~~~~~ 173 (189)
T 1jlj_A 134 GIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAI 173 (189)
T ss_dssp EEETTEEEEEECSSHHHHHHHHHHHGGGHHHHHHHHTTCC
T ss_pred EEECCeEEEECCCCHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 9999999999999999999999966799999988887763
No 6
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=100.00 E-value=3e-34 Score=263.65 Aligned_cols=158 Identities=48% Similarity=0.745 Sum_probs=149.8
Q ss_pred ceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011276 289 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
++|++||+||||+..|++.|+|+++++++|+++ |+++.++.+||||.+.|+++|+++++..++|+||||||+|+|
T Consensus 1 ~~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~-----G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g 75 (164)
T 2is8_A 1 MFRVGILTVSDKGFRGERQDTTHLAIREVLAGG-----PFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLA 75 (164)
T ss_dssp CEEEEEEEECHHHHHTSSCCCHHHHHHHHHTTS-----SEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred CcEEEEEEEcCcccCCCcccchHHHHHHHHHHC-----CCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCC
Confidence 479999999999999999999999999999999 999999999999999999999999862269999999999999
Q ss_pred CCCChHHHHHHhhccccccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011276 369 PRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKG 448 (489)
Q Consensus 369 ~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l~~~~~~~~~ 448 (489)
+||+|+||+++++++.++|+.+.+++++++++|+++++|+.+|+.++++||+|||+|.+++.+|+.++|.|.+++..+++
T Consensus 76 ~~D~t~ea~~~~~~~~l~g~~~~~~~~~~~~~p~~~l~~g~~G~~~~~~v~~LPG~P~~~~~~~~~v~p~l~~~~~~~~~ 155 (164)
T 2is8_A 76 PRDRTPEATRELLDREVPGLAELMRLVGLRKTPMAALSRGVAGVRGRTLILNLPGSPKGARESLEAVLPVLPHALSLVTG 155 (164)
T ss_dssp TTCCHHHHHHTTCSEECHHHHHHHTTTTCSSCCGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHHHGGGHHHHHHHHHC
T ss_pred CCCChHHHHHHHhCCCCccHHHHHHHcCcCcCCceeeeeeeEEEECCeEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999998887
Q ss_pred Cce
Q 011276 449 DKR 451 (489)
Q Consensus 449 ~~~ 451 (489)
...
T Consensus 156 ~~~ 158 (164)
T 2is8_A 156 KPW 158 (164)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 7
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=100.00 E-value=2.5e-34 Score=263.86 Aligned_cols=157 Identities=36% Similarity=0.587 Sum_probs=142.8
Q ss_pred CcceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011276 287 YTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 287 ~~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
++++|++||+||||++.|+++|+|+++++++|+++ |+++..+.+|||| ++|+++|+++++ +++|+||||||+|
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~-----G~~v~~~~iv~Dd-~~i~~al~~a~~-~~~DlVittGG~s 77 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQQ-----GFSSAQPEVVADG-SPVGEALRKAID-DDVDVILTSGGTG 77 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHHT-----TCEECCCEEECSS-HHHHHHHHHHHH-TTCSEEEEESCCS
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHC-----CCEEEEEEEeCCH-HHHHHHHHHHHh-CCCCEEEECCCCC
Confidence 67899999999999999999999999999999999 9999999999999 999999999985 3799999999999
Q ss_pred CCCCCChHHHHHHhhccccccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011276 367 FTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQI 446 (489)
Q Consensus 367 ~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l~~~~~~~ 446 (489)
+|++|+|+||+++++++++||+.+.|+.++++..|+++++|+.+|+.++++||+|||||.+++.+|+.++|.|.|++.++
T Consensus 78 ~g~~D~t~eal~~~~~~~lpG~~~~~~~~~~~~~p~a~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~~v~P~l~~~~~~~ 157 (164)
T 3pzy_A 78 IAPTDSTPDQTVAVVDYLIPGLAEAIRRSGLPKVPTSVLSRGVCGVAGQTLIVNLPGSPGGVRDGLGVLAGVLDHALDQL 157 (164)
T ss_dssp SSTTCCHHHHHHTTCSEECHHHHHHHHHTTTTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CCCCccHHHHHHHHhcccCccHHHHHHhhccCCCCccccchhhhcccCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888889999999999999999999999999999999996679999999998
Q ss_pred cCCc
Q 011276 447 KGDK 450 (489)
Q Consensus 447 ~~~~ 450 (489)
.+..
T Consensus 158 ~g~~ 161 (164)
T 3pzy_A 158 AGKD 161 (164)
T ss_dssp TTC-
T ss_pred hcCC
Confidence 8753
No 8
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=100.00 E-value=5.5e-34 Score=262.66 Aligned_cols=165 Identities=86% Similarity=1.273 Sum_probs=151.5
Q ss_pred CCcceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCC
Q 011276 286 GYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGT 365 (489)
Q Consensus 286 ~~~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~ 365 (489)
+++++|++||+||||+..|++.|+|+++++++|++++++++|+++.++.+|+||.++|+++|+++++..++|+||||||+
T Consensus 2 ~~~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 2 PGPEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp -CCSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCCcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 36789999999999999999999999999999998876665799999999999999999999999853379999999999
Q ss_pred CCCCCCChHHHHHHhhccccccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHHHHHHhh
Q 011276 366 GFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQ 445 (489)
Q Consensus 366 G~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l~~~~~~ 445 (489)
|+|++|+|++|+++++++++||+.+.+++++++++|+++++|.++|+.++++||+|||+|.+++.+|+.++|.|.+++.+
T Consensus 82 g~g~~D~t~~a~~~~~~~~l~g~~~~~~~~g~~~~Pg~~~sr~~~G~~~~~~v~~LPG~P~s~~~~~~~~~P~L~~~~~~ 161 (167)
T 1uuy_A 82 GFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFAMLARSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQ 161 (167)
T ss_dssp SSSTTCCHHHHHHHHCSEECHHHHHHHHHHHHHHCGGGGGCCCCEEEETTEEEEEECSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHhcCCCCcHHHHHHhcccccCCCCcccceeEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888999999999999999999999999999999999999999999988999999988
Q ss_pred hcCCc
Q 011276 446 IKGDK 450 (489)
Q Consensus 446 ~~~~~ 450 (489)
+.+..
T Consensus 162 ~~g~~ 166 (167)
T 1uuy_A 162 IKGDK 166 (167)
T ss_dssp HC---
T ss_pred HhCCC
Confidence 87643
No 9
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=100.00 E-value=5e-35 Score=271.97 Aligned_cols=148 Identities=20% Similarity=0.350 Sum_probs=133.5
Q ss_pred eeeeeCCeEEEEecCCcCcCCCCCCCCC-CcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhc-CCCEE
Q 011276 3 VKVYRTPTIAVLSTGDELVEPTTQCLDR-GQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSA-GIDIL 80 (489)
Q Consensus 3 V~V~r~prV~iistGdEl~~~g~~~~~~-g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~-~~Dlv 80 (489)
-.+|++|||+||+||||++ ++ +.. |||+|+|+++|+++|+++|+++..+++++||+++|+++|++++++ ++|+|
T Consensus 10 ~~~~~~~rv~IittGde~~---~~-~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlV 85 (178)
T 2pjk_A 10 ENAPKSLNFYVITISTSRY---EK-LLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVI 85 (178)
T ss_dssp ---CCCCEEEEEEECHHHH---HH-HHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEE
T ss_pred hcCCCCCEEEEEEeCcccc---cc-cccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEE
Confidence 3689999999999999998 22 446 999999999999999999999999999999999999999999873 39999
Q ss_pred EEeCCCcCCCCCchHHHHHhc------C-CeEEeeeeecC---CCc-----eeeEEEccCCCCccccccEEEEEcCCChH
Q 011276 81 LTSGGVSMGDKDFVKPLLQKK------G-TIYFNKVCMKP---GKP-----LTFAEINIKPTDDVMVNKILAFGLPGNPV 145 (489)
Q Consensus 81 ittGG~s~G~~D~~~~~l~~~------G-~~~f~~v~~kP---Gkp-----~~~a~~~~~~~~~~~~~~~~v~~LPGnP~ 145 (489)
|||||+|+|++|+|+++++++ | ..+||+++|+| |+| ..+|.++ +++||+|||||.
T Consensus 86 ittGG~s~g~~D~t~eal~~~~~~~l~G~~~~~~~v~~~p~~~G~pa~lsr~~~G~~~----------~~~v~~LPG~P~ 155 (178)
T 2pjk_A 86 ISTGGTGYSPTDITVETIRKLFDREIEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIG----------KKIVYLLPGSPD 155 (178)
T ss_dssp EEESCCSSSTTCCHHHHHGGGCSEECHHHHHHHHHHHHTSTTTGGGGGGCCCEEEEET----------TEEEEEECSCHH
T ss_pred EECCCCCCCCCcchHHHHHHHhcccCcchHHHhheeeccCCCCCCcchhheeEEEEEC----------CEEEEECCCCcH
Confidence 999999999999999999998 4 45799999999 999 6778776 599999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 011276 146 SCIVCFHLYIVPAIRHLSG 164 (489)
Q Consensus 146 aa~~~~~~~v~P~L~~l~G 164 (489)
|++++|+.|+.|+|+++++
T Consensus 156 aa~~~~~~~v~P~l~~~~~ 174 (178)
T 2pjk_A 156 AVKLALKELILPEVGHLVY 174 (178)
T ss_dssp HHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875
No 10
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=100.00 E-value=8.4e-34 Score=264.38 Aligned_cols=156 Identities=33% Similarity=0.487 Sum_probs=140.5
Q ss_pred CCCcceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC
Q 011276 285 SGYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 364 (489)
Q Consensus 285 ~~~~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG 364 (489)
++++++|++||+||||++.|+ +|+|+++++++|++. |+++..+.+||||++.|+++|+++++ +++|+||||||
T Consensus 26 ~~~~~~rvaIistGdEl~~G~-~Dsn~~~L~~~L~~~-----G~~v~~~~iv~Dd~~~I~~al~~a~~-~~~DlVIttGG 98 (185)
T 3rfq_A 26 AELVVGRALVVVVDDRTAHGD-EDHSGPLVTELLTEA-----GFVVDGVVAVEADEVDIRNALNTAVI-GGVDLVVSVGG 98 (185)
T ss_dssp ---CCEEEEEEEECHHHHTTC-CCSHHHHHHHHHHHT-----TEEEEEEEEECSCHHHHHHHHHHHHH-TTCSEEEEESC
T ss_pred cCCCCCEEEEEEECcccCCCC-cCcHHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEECCC
Confidence 458999999999999999999 999999999999999 99999999999999999999999873 38999999999
Q ss_pred CCCCCCCChHHHHHHhhccccccHHHHHHhcccccCC---CccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHHHH
Q 011276 365 TGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTP---FAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKH 441 (489)
Q Consensus 365 ~G~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p---~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l~~ 441 (489)
+|+|++|+|+||+++++++++||+.+.|+. +.++| .++++|+++|+.++++||+|||||.+++.+|+.++|.|.|
T Consensus 99 ts~g~~D~t~eal~~l~~~~l~G~~~~f~~--v~~kpG~p~a~lsR~~~G~~~~~~V~~LPGnP~aa~~~~~~l~P~L~~ 176 (185)
T 3rfq_A 99 TGVTPRDVTPESTREILDREILGIAEAIRA--SGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMATLNPLAAH 176 (185)
T ss_dssp CSSSTTCCHHHHHHTTCSEECHHHHHHHHH--HHHHTTCHHHHTCCCCEEEETTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHhcccCccHHHHHHH--HhcCCCCCceeeeehhhcccCCeEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887554 45555 4567899999999999999999999999999988999999
Q ss_pred HHhhhcCC
Q 011276 442 ALKQIKGD 449 (489)
Q Consensus 442 ~~~~~~~~ 449 (489)
++.+++++
T Consensus 177 ~~~~l~g~ 184 (185)
T 3rfq_A 177 IIGQLSSL 184 (185)
T ss_dssp HHHHHC--
T ss_pred HHHHHhcc
Confidence 99988765
No 11
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=100.00 E-value=4.1e-34 Score=266.47 Aligned_cols=141 Identities=15% Similarity=0.193 Sum_probs=127.0
Q ss_pred eeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEe
Q 011276 4 KVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTS 83 (489)
Q Consensus 4 ~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlvitt 83 (489)
+++++|||+||+||||++ .|| +|+|+++|.++|+++|+++..+.+++||++.|+++|++++++++|+||||
T Consensus 26 ~~~~~~rvaIistGdEl~--------~G~-~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVItt 96 (185)
T 3rfq_A 26 AELVVGRALVVVVDDRTA--------HGD-EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSV 96 (185)
T ss_dssp ---CCEEEEEEEECHHHH--------TTC-CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred cCCCCCEEEEEEECcccC--------CCC-cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 689999999999999998 689 99999999999999999999999999999999999999974359999999
Q ss_pred CCCcCCCCCchHHHHHhcC-------CeEEeeeeecCCCce------eeEEEccCCCCccccccEEEEEcCCChHHHHHH
Q 011276 84 GGVSMGDKDFVKPLLQKKG-------TIYFNKVCMKPGKPL------TFAEINIKPTDDVMVNKILAFGLPGNPVSCIVC 150 (489)
Q Consensus 84 GG~s~G~~D~~~~~l~~~G-------~~~f~~v~~kPGkp~------~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~ 150 (489)
||+|+|++|+|++++++++ +.+||+++||||+|+ .+|..+ +++||+|||||.|++++
T Consensus 97 GGts~g~~D~t~eal~~l~~~~l~G~~~~f~~v~~kpG~p~a~lsR~~~G~~~----------~~~V~~LPGnP~aa~~~ 166 (185)
T 3rfq_A 97 GGTGVTPRDVTPESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSG----------STLVVNLAGSRYAVRDG 166 (185)
T ss_dssp SCCSSSTTCCHHHHHHTTCSEECHHHHHHHHHHHHHTTCHHHHTCCCCEEEET----------TEEEEEECSSHHHHHHH
T ss_pred CCCCCCCcccHHHHHHHHhcccCccHHHHHHHHhcCCCCCceeeeehhhcccC----------CeEEEECCCCHHHHHHH
Confidence 9999999999999999984 457999999999998 467765 59999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 011276 151 FHLYIVPAIRHLSG 164 (489)
Q Consensus 151 ~~~~v~P~L~~l~G 164 (489)
|+. +.|+|+++..
T Consensus 167 ~~~-l~P~L~~~~~ 179 (185)
T 3rfq_A 167 MAT-LNPLAAHIIG 179 (185)
T ss_dssp HHH-HHHHHHHHHH
T ss_pred HHH-HHHHHHHHHH
Confidence 986 5999998764
No 12
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=100.00 E-value=7e-33 Score=255.25 Aligned_cols=155 Identities=24% Similarity=0.428 Sum_probs=135.6
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHH----HHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeC
Q 011276 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSV----VNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLG 363 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~----l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttG 363 (489)
..+|++||+||||++.|+++|+|+++++++ |++. |+++.++.+||||++.|+++|+++++ +++|+|||||
T Consensus 4 m~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~-----G~~v~~~~iv~Dd~~~I~~~l~~a~~-~~~DlVittG 77 (167)
T 2g2c_A 4 MHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDY-----SYELISEVVVPEGYDTVVEAIATALK-QGARFIITAG 77 (167)
T ss_dssp CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----C-----EEEEEEEEEECSSHHHHHHHHHHHHH-TTCSEEEEES
T ss_pred CccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHC-----CCEEeEEEEeCCCHHHHHHHHHHHHh-CCCCEEEECC
Confidence 458999999999999999999999999999 9988 99999999999999999999999987 2499999999
Q ss_pred CCCCCCCCChHHHHHHhhccccccHHHHHHhcccccCCCccccccceeEECC----EEEEEcCCCHHHHHHHHHHHHHHH
Q 011276 364 GTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGS----TLIINMPGNPNAVAECMEALLPAL 439 (489)
Q Consensus 364 G~G~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~----~~v~~LPG~P~a~~~~~~~ilp~l 439 (489)
|+|+|+||+|+||++++++++++|+.+.|+..+++..|+++++|+.+|+.++ ++||+|||+|.+++.+|+.++|.|
T Consensus 78 G~g~~~~D~t~ea~~~~~~~~l~g~~~~~~~~~~~~~p~a~l~r~~aG~~~~~~~~~~v~~LPG~P~~~~~~~~~v~P~L 157 (167)
T 2g2c_A 78 GTGIRAKNQTPEATASFIHTRCEGLEQQILIHGSTHTHLAGLSRGIVGVTGRDDHAALIVNAPSSSGGITDTWAVISPVI 157 (167)
T ss_dssp CCSSSTTCCHHHHHHTTCSEECHHHHHHHHHHC-------CCCCCCEEESCSSTTCCEEEEECSSHHHHHHHHHHHGGGH
T ss_pred CCCCCCCcChHHHHHHHhCCcCccHHHHHHHhcCCcCCceeeeccccceecCCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887777767888999999999888 999999999999999999556999
Q ss_pred HHHHhhhcC
Q 011276 440 KHALKQIKG 448 (489)
Q Consensus 440 ~~~~~~~~~ 448 (489)
.+++.++.+
T Consensus 158 ~~~~~~~~~ 166 (167)
T 2g2c_A 158 PNIFEGLDA 166 (167)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHcC
Confidence 998887764
No 13
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=100.00 E-value=9.8e-34 Score=265.63 Aligned_cols=147 Identities=21% Similarity=0.325 Sum_probs=130.6
Q ss_pred CeeeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHh---CCCeEEEEEeecCCHHHHHHHHHHHHh-cC
Q 011276 1 MMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQ---QHCKLIDLGIVRDDEEELEKTLDNAFS-AG 76 (489)
Q Consensus 1 ~~V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~---~G~~~~~~~~v~Dd~~~i~~~l~~~~~-~~ 76 (489)
.+|+||++|||+||+|||||+ .|+++|+|+++|+++|++ +|+++..+.+++||+++|+++|+++++ ++
T Consensus 7 ~~v~v~~~~rv~IistGdEl~--------~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~ 78 (189)
T 1jlj_A 7 ILTNHDHQIRVGVLTVSDSCF--------RNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKE 78 (189)
T ss_dssp ------CCCEEEEEEECHHHH--------TTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSC
T ss_pred ccccccCCCEEEEEEECCccC--------CCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCC
Confidence 368999999999999999998 578899999999999999 899999999999999999999999986 24
Q ss_pred CCEEEEeCCCcCCCCCchHHHHHhcC---------CeEEeeeeecCCCce---eeEEEccCCCCccccccEEEEEcCCCh
Q 011276 77 IDILLTSGGVSMGDKDFVKPLLQKKG---------TIYFNKVCMKPGKPL---TFAEINIKPTDDVMVNKILAFGLPGNP 144 (489)
Q Consensus 77 ~DlvittGG~s~G~~D~~~~~l~~~G---------~~~f~~v~~kPGkp~---~~a~~~~~~~~~~~~~~~~v~~LPGnP 144 (489)
+|+||||||+|+|++|+|++++++++ .+.|++++|+||+|+ .+|..+ +++||+|||||
T Consensus 79 ~DlVIttGGtg~g~~D~t~eal~~~~~~~lpg~~~~~~~~~~~~~Pg~~lsr~~~G~~~----------~~~v~~LPG~P 148 (189)
T 1jlj_A 79 LNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIRG----------KTLIINLPGSK 148 (189)
T ss_dssp CSEEEEESCCSSSTTCCHHHHHHHHCSEECHHHHHHHHHHHHHHCGGGGGCCCCEEEET----------TEEEEEECSSH
T ss_pred CCEEEEcCCCCCCCcccHHHHHHHHhccccccchhhheecccccCCCCccccceEEEEC----------CeEEEECCCCH
Confidence 99999999999999999999999986 467899999999998 788875 59999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 011276 145 VSCIVCFHLYIVPAIRHLSGWA 166 (489)
Q Consensus 145 ~aa~~~~~~~v~P~L~~l~G~~ 166 (489)
.|+..+|+ ++.|+|+++.+..
T Consensus 149 ~s~~~~~~-~v~P~L~~~~~~~ 169 (189)
T 1jlj_A 149 KGSQECFQ-FILPALPHAIDLL 169 (189)
T ss_dssp HHHHHHHH-HHGGGHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhhh
Confidence 99999999 9999999988753
No 14
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=99.98 E-value=1.5e-32 Score=258.44 Aligned_cols=159 Identities=32% Similarity=0.507 Sum_probs=141.9
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcE--EEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCC
Q 011276 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAK--VVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGT 365 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~--v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~ 365 (489)
.++|++||+||||++.|+++|+|+++++++|+++ |++ +..+.+||||.+.|+++|+++++..++|+||||||+
T Consensus 2 ~~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~-----G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGt 76 (195)
T 1di6_A 2 ATLRIGLVSISDRASSGVYQDKGIPALEEWLTSA-----LTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGT 76 (195)
T ss_dssp CCEEEEEEEEECC-------CCHHHHHHHHHHHH-----BCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCEEEEEEECCCCCCCeEEchHHHHHHHHHHHc-----CCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 4689999999999999999999999999999999 988 789999999999999999999873369999999999
Q ss_pred CCCCCCChHHHHHHhhccccccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHH----------
Q 011276 366 GFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL---------- 435 (489)
Q Consensus 366 G~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i---------- 435 (489)
|+|+||+|+||+++++++++||+.+.|+..+++..|.++++|+.+|+.++++||+|||+|.+++.+|+.|
T Consensus 77 g~g~~D~T~ea~~~~~~~~l~g~~~~~~~~~~~~~p~a~lsr~~aG~~~~~~v~~LPG~P~a~~~~~~~~~~~~~~~~~~ 156 (195)
T 1di6_A 77 GPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVH 156 (195)
T ss_dssp SSSTTCCHHHHHHHTCSEECHHHHHHHHHHHHTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHEEECTTSCEEEE
T ss_pred CCCCCccHHHHHHHHhcccCccHHHHHHHhcCCCCCcceeccceEEEECCEEEEECCCCHHHHHHHHHHHHhhcccchhh
Confidence 9999999999999999999999999998888888888899999999999999999999999999999985
Q ss_pred --HHHHHHHHhhhcCCce
Q 011276 436 --LPALKHALKQIKGDKR 451 (489)
Q Consensus 436 --lp~l~~~~~~~~~~~~ 451 (489)
+|.|.|++.++.+...
T Consensus 157 ~v~p~l~~~~~~l~g~~~ 174 (195)
T 1di6_A 157 GIFASVPYCIQLLEGPYV 174 (195)
T ss_dssp CGGGGHHHHHHHTTCCCC
T ss_pred hHHHHHHHHHHHhcCCCc
Confidence 7999999999988743
No 15
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=99.98 E-value=2.6e-33 Score=258.63 Aligned_cols=144 Identities=17% Similarity=0.315 Sum_probs=127.5
Q ss_pred eeeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHh-cCCCEE
Q 011276 2 MVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS-AGIDIL 80 (489)
Q Consensus 2 ~V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~-~~~Dlv 80 (489)
+++||++|||+||+||||+ |+++|+|+++|+++|+++|+++..+.+++||+++|+++|+++++ +++|+|
T Consensus 7 ~~~v~~~~rv~Ii~tGdEl----------g~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlV 76 (169)
T 1y5e_A 7 KKQAPKEVRCKIVTISDTR----------TEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVV 76 (169)
T ss_dssp -----CCCEEEEEEECSSC----------CTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEE
T ss_pred ccccccCCEEEEEEEcCcc----------CeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEE
Confidence 5689999999999999998 37899999999999999999999999999999999999999986 249999
Q ss_pred EEeCCCcCCCCCchHHHHHhcC-------CeEEeeeee--cCCCceee-----EEEccCCCCccccccEEEEEcCCChHH
Q 011276 81 LTSGGVSMGDKDFVKPLLQKKG-------TIYFNKVCM--KPGKPLTF-----AEINIKPTDDVMVNKILAFGLPGNPVS 146 (489)
Q Consensus 81 ittGG~s~G~~D~~~~~l~~~G-------~~~f~~v~~--kPGkp~~~-----a~~~~~~~~~~~~~~~~v~~LPGnP~a 146 (489)
|||||+|+|++|+|++++++++ +.+||+++| +||+|+++ |..+ +++||+|||||.+
T Consensus 77 ittGG~g~g~~D~t~ea~~~~~~~~l~g~~~~~~~~~~~~~pG~~~~~~r~~aG~~~----------~~~v~~LPG~P~~ 146 (169)
T 1y5e_A 77 LTNGGTGITKRDVTIEAVSALLDKEIVGFGELFRMISYLEDIGSSAMLSRAIGGTIG----------RKVVFSMPGSSGA 146 (169)
T ss_dssp EEECCCSSSTTCCHHHHHHTTCSEECHHHHHHHHHHHHHHSSGGGGGGCCCEEEEET----------TEEEEEECSSHHH
T ss_pred EEcCCCCCCCCCCcHHHHHHHcCCCCCChHHHHhhhhcccCCCcceecccceeEEEC----------CEEEEECCCCHHH
Confidence 9999999999999999999974 347899999 99999886 3433 5999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 011276 147 CIVCFHLYIVPAIRHLSGW 165 (489)
Q Consensus 147 a~~~~~~~v~P~L~~l~G~ 165 (489)
+..+|+.++.|+|++++|.
T Consensus 147 ~~~~~~~~v~p~L~~~~~~ 165 (169)
T 1y5e_A 147 VRLAMNKLILPELGHITFE 165 (169)
T ss_dssp HHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998874
No 16
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=99.98 E-value=4.3e-32 Score=252.24 Aligned_cols=155 Identities=28% Similarity=0.497 Sum_probs=141.9
Q ss_pred CCcceEEEEEEeCCccc----C-CCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEE
Q 011276 286 GYTEFSVAILTVSDTVA----S-GAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLIL 360 (489)
Q Consensus 286 ~~~~~~v~Ii~~GdEi~----~-G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVI 360 (489)
+++++|++||+||||+. . |+++|+|+++++++|+++ |+++.++.++|||+++|+++|+++++..++|+||
T Consensus 12 ~~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~-----G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVi 86 (178)
T 2pjk_A 12 APKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIEN-----GHKIIGYSLVPDDKIKILKAFTDALSIDEVDVII 86 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHT-----TCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEE
T ss_pred CCCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 48999999999999987 7 999999999999999999 9999999999999999999999998722399999
Q ss_pred EeCCCCCCCCCChHHHHHHhhccccccHHHHHHhcccccCC---Cc--cccccceeEECCEEEEEcCCCHHHHHHHHHH-
Q 011276 361 TLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTP---FA--MLSRSAAGIRGSTLIINMPGNPNAVAECMEA- 434 (489)
Q Consensus 361 ttGG~G~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p---~a--~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~- 434 (489)
||||+|+|++|+|++|+++++++++||+.+. |+++.++| |+ +++|..+|+.++++||+|||||.++..+|+.
T Consensus 87 ttGG~s~g~~D~t~eal~~~~~~~l~G~~~~--~~~v~~~p~~~G~pa~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~~~ 164 (178)
T 2pjk_A 87 STGGTGYSPTDITVETIRKLFDREIEGFSDV--FRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKEL 164 (178)
T ss_dssp EESCCSSSTTCCHHHHHGGGCSEECHHHHHH--HHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHHHT
T ss_pred ECCCCCCCCCcchHHHHHHHhcccCcchHHH--hheeeccCCCCCCcchhheeEEEEECCEEEEECCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999874 66778888 64 5788899999999999999999999999996
Q ss_pred HHHHHHHHHhhhc
Q 011276 435 LLPALKHALKQIK 447 (489)
Q Consensus 435 ilp~l~~~~~~~~ 447 (489)
++|.|.+++.+++
T Consensus 165 v~P~l~~~~~~~~ 177 (178)
T 2pjk_A 165 ILPEVGHLVYLVR 177 (178)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 5799999887764
No 17
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=99.98 E-value=3.8e-33 Score=256.00 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=120.2
Q ss_pred eeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011276 6 YRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 6 ~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
+++|||+||+||||++ .||++|+|+++|+++|+++|+++..+.+++|| ++|+++|++++++++|+||||||
T Consensus 5 ~~~~rv~ii~tGdEl~--------~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 5 MTTRSARVIIASTRAS--------SGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp --CCEEEEEEECHHHH--------C----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCCCEEEEEEECCCCC--------CCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 5789999999999998 79999999999999999999999999999999 99999999998635999999999
Q ss_pred CcCCCCCchHHHHHhc------C-CeEEeeeeecCCCce-----eeEEEccCCCCccccccEEEEEcCCChHHHHHHHHH
Q 011276 86 VSMGDKDFVKPLLQKK------G-TIYFNKVCMKPGKPL-----TFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHL 153 (489)
Q Consensus 86 ~s~G~~D~~~~~l~~~------G-~~~f~~v~~kPGkp~-----~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~ 153 (489)
+|+|++|+|+++++++ | ...||+++++||++. ++|..+ +++||+|||||.|++++|+
T Consensus 76 ~s~g~~D~t~eal~~~~~~~lpG~~~~~~~~~~~~~p~a~lsr~~~G~~~----------~~~v~~LPG~P~aa~~~~~- 144 (164)
T 3pzy_A 76 TGIAPTDSTPDQTVAVVDYLIPGLAEAIRRSGLPKVPTSVLSRGVCGVAG----------QTLIVNLPGSPGGVRDGLG- 144 (164)
T ss_dssp CSSSTTCCHHHHHHTTCSEECHHHHHHHHHTTTTTCGGGGGCCCCEEEET----------TEEEEEECSSHHHHHHHHH-
T ss_pred CCCCCCccHHHHHHHHhcccCccHHHHHHhhccCCCCccccchhhhcccC----------CEEEEECCCCHHHHHHHHH-
Confidence 9999999999999998 4 456899999998553 356665 5999999999999999999
Q ss_pred HHHHHHHHhcC
Q 011276 154 YIVPAIRHLSG 164 (489)
Q Consensus 154 ~v~P~L~~l~G 164 (489)
|+.|+|+++..
T Consensus 145 ~v~P~l~~~~~ 155 (164)
T 3pzy_A 145 VLAGVLDHALD 155 (164)
T ss_dssp HHHTTHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 18
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=99.97 E-value=4.1e-31 Score=243.89 Aligned_cols=155 Identities=30% Similarity=0.445 Sum_probs=137.5
Q ss_pred CCCcceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC
Q 011276 285 SGYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 364 (489)
Q Consensus 285 ~~~~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG 364 (489)
++|+++|++||+||||+ |++.|+|+++++++|++. |+++.++.+|+||.++|+++|+++++..++|+||||||
T Consensus 9 ~v~~~~rv~Ii~tGdEl--g~i~Dsn~~~l~~~L~~~-----G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 9 QAPKEVRCKIVTISDTR--TEETDKSGQLLHELLKEA-----GHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp ---CCCEEEEEEECSSC--CTTTCHHHHHHHHHHHHH-----TCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred ccccCCEEEEEEEcCcc--CeeccChHHHHHHHHHHC-----CCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 35899999999999999 999999999999999999 99999999999999999999999985337999999999
Q ss_pred CCCCCCCChHHHHHHhhccccccHHHHHHhccccc--CCCccc--cccceeEECCEEEEEcCCCHHHHHHHHHH-HHHHH
Q 011276 365 TGFTPRDVTPEATKELIERETPGLLYVMMQESLKV--TPFAML--SRSAAGIRGSTLIINMPGNPNAVAECMEA-LLPAL 439 (489)
Q Consensus 365 ~G~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~--~p~a~l--~r~~~g~~~~~~v~~LPG~P~a~~~~~~~-ilp~l 439 (489)
+|+|+||+|+||++++++++++|+.+.+ +++.+ +||++. +|+.+|+.++++||+|||+|.+++.+|+. ++|.|
T Consensus 82 ~g~g~~D~t~ea~~~~~~~~l~g~~~~~--~~~~~~~~pG~~~~~~r~~aG~~~~~~v~~LPG~P~~~~~~~~~~v~p~L 159 (169)
T 1y5e_A 82 TGITKRDVTIEAVSALLDKEIVGFGELF--RMISYLEDIGSSAMLSRAIGGTIGRKVVFSMPGSSGAVRLAMNKLILPEL 159 (169)
T ss_dssp CSSSTTCCHHHHHHTTCSEECHHHHHHH--HHHHHHHSSGGGGGGCCCEEEEETTEEEEEECSSHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCcHHHHHHHcCCCCCChHHHH--hhhhcccCCCcceecccceeEEECCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988754 45566 787764 66677899999999999999999999996 57999
Q ss_pred HHHHhhhcC
Q 011276 440 KHALKQIKG 448 (489)
Q Consensus 440 ~~~~~~~~~ 448 (489)
.++...+.+
T Consensus 160 ~~~~~~~~~ 168 (169)
T 1y5e_A 160 GHITFELHR 168 (169)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 988877654
No 19
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=99.97 E-value=4.1e-31 Score=245.81 Aligned_cols=154 Identities=40% Similarity=0.627 Sum_probs=134.9
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHH---ccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC
Q 011276 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVN---SSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 364 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~---~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG 364 (489)
++++++||+||||+..|++.|+|+++++++|+ ++ |+++ .+.+||||.++|+++|+++++..++|+||||||
T Consensus 4 ~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~-----G~~v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG 77 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIIT-----PFEV-EYRVIPDERDLIEKTLIELADEKGCSLILTTGG 77 (178)
T ss_dssp -CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCS-----CCEE-EEEEECSCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhC-----CCEE-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 57899999999999999999999999999888 88 9999 889999999999999999986336999999999
Q ss_pred CCCCCCCChHHHHHHhhccccccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHHHHHHh
Q 011276 365 TGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALK 444 (489)
Q Consensus 365 ~G~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l~~~~~ 444 (489)
+|+|+||+|+||++++++++++|+.+.++....+.+|.+.++|+++|+.++++||+|||+|.+++.+|+.++|.++++..
T Consensus 78 ~g~g~~D~t~ea~~~~~~~~l~g~~~~~~~v~~~~~p~~~lsrg~ag~~~~~~v~~LPG~P~~~~~~~~~~~~v~p~l~~ 157 (178)
T 2pbq_A 78 TGPAPRDVTPEATEAVCEKMLPGFGELMRQVSLKQVPTAILSRQTAGIRGSCLIVNLPGKPQSIKVCLDAVMPAIPYCID 157 (178)
T ss_dssp CSSSTTCCHHHHHHHHCSEECHHHHHHHHHHHHTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHHHGGGHHHHHH
T ss_pred CCCCCCCchHHHHHHHhCCCCCChHHHHHHHhcccCcccccccceeeeECCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887765544444677778899999999999999999999999999998554445444
Q ss_pred hhc
Q 011276 445 QIK 447 (489)
Q Consensus 445 ~~~ 447 (489)
.+.
T Consensus 158 ~~~ 160 (178)
T 2pbq_A 158 LIG 160 (178)
T ss_dssp HTT
T ss_pred Hhc
Confidence 443
No 20
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=7e-31 Score=244.32 Aligned_cols=156 Identities=29% Similarity=0.524 Sum_probs=139.4
Q ss_pred CcceEEEEEEeCCc-----ccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEE
Q 011276 287 YTEFSVAILTVSDT-----VASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILT 361 (489)
Q Consensus 287 ~~~~~v~Ii~~GdE-----i~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIt 361 (489)
.+++|++||++||+ +..|++.|+|+++++++|+++ |+++.++.+||||++.|.++++.+.+..++|+|||
T Consensus 13 ~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~-----G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVit 87 (178)
T 3iwt_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIEN-----GHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIS 87 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHT-----TCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEE
T ss_pred CCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 67899999999995 457899999999999999999 99999999999999999999998876568999999
Q ss_pred eCCCCCCCCCChHHHHHHhhccccccHHHHHHhccc---ccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHH-HHH
Q 011276 362 LGGTGFTPRDVTPEATKELIERETPGLLYVMMQESL---KVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEA-LLP 437 (489)
Q Consensus 362 tGG~G~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~---~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~-ilp 437 (489)
|||+|+|+||+|+|++++++++.++++.+.++.... +..++++++|..+|+.++++||+|||+|.+++.||+. ++|
T Consensus 88 tGG~g~~~~D~t~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~G~~~~~~i~~LPG~P~~~~~~~~~~v~P 167 (178)
T 3iwt_A 88 TGGTGYSPTDITVETIRKLFDREIEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELILP 167 (178)
T ss_dssp ESCCSSSTTCCHHHHHGGGCSEECHHHHHHHHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHHHTHHH
T ss_pred cCCcccCCCCchHHHHHHhhhcccccHHHHHHHHHhccccccccccccccceeeECCEEEEECCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887654332 2345677788899999999999999999999999987 579
Q ss_pred HHHHHHhhhc
Q 011276 438 ALKHALKQIK 447 (489)
Q Consensus 438 ~l~~~~~~~~ 447 (489)
.|.|++.+++
T Consensus 168 ~L~h~~~~ir 177 (178)
T 3iwt_A 168 EVGHLVYLVR 177 (178)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999987764
No 21
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=99.97 E-value=4.3e-32 Score=251.10 Aligned_cols=146 Identities=18% Similarity=0.335 Sum_probs=130.9
Q ss_pred eeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhc-CCCEEEEeC
Q 011276 6 YRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSA-GIDILLTSG 84 (489)
Q Consensus 6 ~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~-~~DlvittG 84 (489)
|++|||+||+||||+ |+++|+|+++|+++|+++|+++..+.+++||+++|+++|++++++ ++|+|||||
T Consensus 8 ~~~~~v~Ii~tGdE~----------g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittG 77 (172)
T 1mkz_A 8 FIPTRIAILTVSNRR----------GEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITG 77 (172)
T ss_dssp CCCCEEEEEEECSSC----------CGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEES
T ss_pred CCCCEEEEEEEeCCC----------CcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 889999999999994 689999999999999999999999999999999999999999874 499999999
Q ss_pred CCcCCCCCchHHHHHhc------C-CeEEeeeeecC-CCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHH
Q 011276 85 GVSMGDKDFVKPLLQKK------G-TIYFNKVCMKP-GKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIV 156 (489)
Q Consensus 85 G~s~G~~D~~~~~l~~~------G-~~~f~~v~~kP-Gkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~ 156 (489)
|+|+|++|+|+++++++ | +.+||+++++| |+|+.+++.... ..++++||+|||||.++..+|+.++.
T Consensus 78 G~g~~~~D~t~ea~~~~~~~~l~g~~~~~~~i~~~p~G~~~~~a~~~~G-----~~~~~~v~~LPG~P~~~~~~~~~~v~ 152 (172)
T 1mkz_A 78 GTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAG-----VANKTLILAMPGSTKACRTAWENIIA 152 (172)
T ss_dssp CCSSSTTCCHHHHHGGGCSEECHHHHHHHHHHHHHHHGGGGGGCCCEEE-----EETTEEEEEECSSHHHHHHHHHHTHH
T ss_pred CCCCCCCCCHHHHHHHHhcccCCccHHHHHHHhhcccCcceecccccce-----eECCEEEEECCCCHHHHHHHHHHHHH
Confidence 99999999999999998 7 78899999999 999987552100 01259999999999999999999999
Q ss_pred HHHHHhcCCC
Q 011276 157 PAIRHLSGWA 166 (489)
Q Consensus 157 P~L~~l~G~~ 166 (489)
|+|++++|..
T Consensus 153 p~L~~~~~~~ 162 (172)
T 1mkz_A 153 PQLDARTRPC 162 (172)
T ss_dssp HHHCTTCSSC
T ss_pred HHHhhhcccc
Confidence 9999888753
No 22
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=99.97 E-value=1.1e-31 Score=247.17 Aligned_cols=141 Identities=21% Similarity=0.334 Sum_probs=128.7
Q ss_pred eeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhC-----CCeEEEEEeecCCHHHHHHHHHHHHh-cCCCE
Q 011276 6 YRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQ-----HCKLIDLGIVRDDEEELEKTLDNAFS-AGIDI 79 (489)
Q Consensus 6 ~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~-----G~~~~~~~~v~Dd~~~i~~~l~~~~~-~~~Dl 79 (489)
|++|||+||+||||+. +|+++|+|+++|.++|+++ |+++..+++++||+++|+++|+++++ +++|+
T Consensus 3 ~~~~rv~IistGde~~--------~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~Dl 74 (167)
T 1uuy_A 3 GPEYKVAILTVSDTVS--------AGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDL 74 (167)
T ss_dssp CCSEEEEEEEECHHHH--------TTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSE
T ss_pred CCCcEEEEEEECCccc--------CCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCE
Confidence 6889999999999984 5678899999999999999 99999999999999999999999985 35999
Q ss_pred EEEeCCCcCCCCCchHHHHHhc------C---CeEEeeeeecCCCce---eeEEEccCCCCccccccEEEEEcCCChHHH
Q 011276 80 LLTSGGVSMGDKDFVKPLLQKK------G---TIYFNKVCMKPGKPL---TFAEINIKPTDDVMVNKILAFGLPGNPVSC 147 (489)
Q Consensus 80 vittGG~s~G~~D~~~~~l~~~------G---~~~f~~v~~kPGkp~---~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa 147 (489)
||||||+|+|++|+|+++++++ | .++||+++++||+++ .+|..+ +++||+|||||.|+
T Consensus 75 VittGG~g~g~~D~t~~a~~~~~~~~l~g~~~~~~~~g~~~~Pg~~~sr~~~G~~~----------~~~v~~LPG~P~s~ 144 (167)
T 1uuy_A 75 ILTLGGTGFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFAMLARSAAGIRG----------STLIINMPGNPNAV 144 (167)
T ss_dssp EEEESCCSSSTTCCHHHHHHHHCSEECHHHHHHHHHHHHHHCGGGGGCCCCEEEET----------TEEEEEECSSTTHH
T ss_pred EEECCCCCCCCCCchHHHHHHHhcCCCCcHHHHHHhcccccCCCCcccceeEEEEC----------CEEEEECCCCHHHH
Confidence 9999999999999999999998 6 278999999999985 778775 49999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 011276 148 IVCFHLYIVPAIRHLSGW 165 (489)
Q Consensus 148 ~~~~~~~v~P~L~~l~G~ 165 (489)
.++|+.|+ |+|+++.+.
T Consensus 145 ~~~~~~~~-P~L~~~~~~ 161 (167)
T 1uuy_A 145 AECMEALL-PALKHALKQ 161 (167)
T ss_dssp HHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHH
Confidence 99999997 999988763
No 23
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=99.97 E-value=4.5e-31 Score=242.44 Aligned_cols=139 Identities=18% Similarity=0.295 Sum_probs=125.7
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhc-CCCEEEEeCCC
Q 011276 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSA-GIDILLTSGGV 86 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~-~~DlvittGG~ 86 (489)
+|||+||+||||+. +||++|+|+++|+++|+++|+++..+.+++||+++|+++|++++++ ++|+||||||+
T Consensus 1 ~~~v~Ii~tGdEl~--------~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 72 (164)
T 2is8_A 1 MFRVGILTVSDKGF--------RGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGT 72 (164)
T ss_dssp CEEEEEEEECHHHH--------HTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CcEEEEEEEcCccc--------CCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 37999999999985 7899999999999999999999999999999999999999999873 49999999999
Q ss_pred cCCCCCchHHHHHhcCC---------eEEeeeeecCCCce---eeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHH
Q 011276 87 SMGDKDFVKPLLQKKGT---------IYFNKVCMKPGKPL---TFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLY 154 (489)
Q Consensus 87 s~G~~D~~~~~l~~~G~---------~~f~~v~~kPGkp~---~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~ 154 (489)
|+|++|+|++++++++. +.|++++++||+|+ .+|..+ +++||+|||||.++..+|+.
T Consensus 73 g~g~~D~t~ea~~~~~~~~l~g~~~~~~~~~~~~~p~~~l~~g~~G~~~----------~~~v~~LPG~P~~~~~~~~~- 141 (164)
T 2is8_A 73 GLAPRDRTPEATRELLDREVPGLAELMRLVGLRKTPMAALSRGVAGVRG----------RTLILNLPGSPKGARESLEA- 141 (164)
T ss_dssp SSSTTCCHHHHHHTTCSEECHHHHHHHTTTTCSSCCGGGGCCCCEEEET----------TEEEEEECSSHHHHHHHHHH-
T ss_pred CCCCCCChHHHHHHHhCCCCccHHHHHHHcCcCcCCceeeeeeeEEEEC----------CeEEEECCCCHHHHHHHHHH-
Confidence 99999999999999862 23689999999999 455544 59999999999999999998
Q ss_pred HHHHHHHhcCC
Q 011276 155 IVPAIRHLSGW 165 (489)
Q Consensus 155 v~P~L~~l~G~ 165 (489)
+.|+|++++|.
T Consensus 142 v~p~l~~~~~~ 152 (164)
T 2is8_A 142 VLPVLPHALSL 152 (164)
T ss_dssp HGGGHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999988764
No 24
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=99.96 E-value=1.6e-30 Score=241.84 Aligned_cols=141 Identities=23% Similarity=0.342 Sum_probs=128.0
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHH---hCCCeEEEEEeecCCHHHHHHHHHHHHhc-CCCEEEE
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAM---QQHCKLIDLGIVRDDEEELEKTLDNAFSA-GIDILLT 82 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~---~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~-~~Dlvit 82 (489)
++|||+||+||||+. .||++|+|+++|+++|+ ++|+++ .+.+++||+++|+++|++++++ ++|+|||
T Consensus 4 ~~~rv~IistGdE~~--------~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVit 74 (178)
T 2pbq_A 4 KKAVIGVVTISDRAS--------KGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDERDLIEKTLIELADEKGCSLILT 74 (178)
T ss_dssp -CCEEEEEEECHHHH--------HTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCEEEEEEeCCcCC--------CCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 789999999999976 79999999999999999 999999 8999999999999999999872 4999999
Q ss_pred eCCCcCCCCCchHHHHHhcC-------CeEEeeeeecCCCce------eeEEEccCCCCccccccEEEEEcCCChHHHHH
Q 011276 83 SGGVSMGDKDFVKPLLQKKG-------TIYFNKVCMKPGKPL------TFAEINIKPTDDVMVNKILAFGLPGNPVSCIV 149 (489)
Q Consensus 83 tGG~s~G~~D~~~~~l~~~G-------~~~f~~v~~kPGkp~------~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~ 149 (489)
|||+|+|++|+|++++++++ +..||+++++| +|. ++|..+ +++||+|||||.++..
T Consensus 75 tGG~g~g~~D~t~ea~~~~~~~~l~g~~~~~~~v~~~~-~p~~~lsrg~ag~~~----------~~~v~~LPG~P~~~~~ 143 (178)
T 2pbq_A 75 TGGTGPAPRDVTPEATEAVCEKMLPGFGELMRQVSLKQ-VPTAILSRQTAGIRG----------SCLIVNLPGKPQSIKV 143 (178)
T ss_dssp ESCCSSSTTCCHHHHHHHHCSEECHHHHHHHHHHHHTT-CGGGGGCCCCEEEET----------TEEEEEECSSHHHHHH
T ss_pred CCCCCCCCCCchHHHHHHHhCCCCCChHHHHHHHhccc-CcccccccceeeeEC----------CEEEEECCCCHHHHHH
Confidence 99999999999999999986 36699999999 888 446654 5999999999999999
Q ss_pred HHHHH--HHHHHHHhcCCCC
Q 011276 150 CFHLY--IVPAIRHLSGWAN 167 (489)
Q Consensus 150 ~~~~~--v~P~L~~l~G~~~ 167 (489)
+|+.+ +.|.|.+++|...
T Consensus 144 ~~~~~~~v~p~l~~~~~~~~ 163 (178)
T 2pbq_A 144 CLDAVMPAIPYCIDLIGGAY 163 (178)
T ss_dssp HHHHHGGGHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 99999 8999999998653
No 25
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=99.96 E-value=1.6e-29 Score=233.75 Aligned_cols=147 Identities=32% Similarity=0.489 Sum_probs=130.3
Q ss_pred CCCcceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC
Q 011276 285 SGYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 364 (489)
Q Consensus 285 ~~~~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG 364 (489)
.+|++++++||+|||| .|++.|+|++++++.|++. |+++.++.+||||.++|+++|+++++..++|+||||||
T Consensus 6 ~~~~~~~v~Ii~tGdE--~g~i~D~n~~~l~~~L~~~-----G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 6 TEFIPTRIAILTVSNR--RGEEDDTSGHYLRDSAQEA-----GHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp SSCCCCEEEEEEECSS--CCGGGCHHHHHHHHHHHHT-----TCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CCCCCCEEEEEEEeCC--CCcccCccHHHHHHHHHHC-----CCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 4588899999999999 5999999999999999999 99999999999999999999999987224999999999
Q ss_pred CCCCCCCChHHHHHHhhccccccHHHHHHhcccccCC-Cccc--cccceeEECCEEEEEcCCCHHHHHHHHHHH-HHHHH
Q 011276 365 TGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTP-FAML--SRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALK 440 (489)
Q Consensus 365 ~G~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p-~a~l--~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i-lp~l~ 440 (489)
+|+|+||+|+||++++++++++|+.+.+ ++++++| |+++ +|..+|+.++++||+|||+|.+++.+|+.+ +|.|.
T Consensus 79 ~g~~~~D~t~ea~~~~~~~~l~g~~~~~--~~i~~~p~G~~~~~a~~~~G~~~~~~v~~LPG~P~~~~~~~~~~v~p~L~ 156 (172)
T 1mkz_A 79 TGLTEGDQAPEALLPLFDREVEGFGEVF--RMLSFEEIGTSTLQSRAVAGVANKTLILAMPGSTKACRTAWENIIAPQLD 156 (172)
T ss_dssp CSSSTTCCHHHHHGGGCSEECHHHHHHH--HHHHHHHHGGGGGGCCCEEEEETTEEEEEECSSHHHHHHHHHHTHHHHHC
T ss_pred CCCCCCCCHHHHHHHHhcccCCccHHHH--HHHhhcccCcceecccccceeECCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987654 4555666 6643 555578899999999999999999999985 68664
No 26
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=99.96 E-value=9.4e-31 Score=241.01 Aligned_cols=141 Identities=13% Similarity=0.140 Sum_probs=115.8
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHH----HHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEe
Q 011276 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAA----AMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTS 83 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~----l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlvitt 83 (489)
.+||+||+||||+. .||++|+|+++|+++ |+++|+++..+.+++||++.|+++|++++++++|+||||
T Consensus 5 ~~~v~Ii~~GdEl~--------~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVitt 76 (167)
T 2g2c_A 5 HIKSAIIVVSDRIS--------TGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITA 76 (167)
T ss_dssp EEEEEEEEECHHHH--------HTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ccEEEEEEECCccc--------CCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 37999999999986 689999999999999 999999999999999999999999999987349999999
Q ss_pred CCCcCCCCCchHHHHHhcC-------CeEEeeeeecCCCcee------eEEEccCCCCccccccEEEEEcCCChHHHHHH
Q 011276 84 GGVSMGDKDFVKPLLQKKG-------TIYFNKVCMKPGKPLT------FAEINIKPTDDVMVNKILAFGLPGNPVSCIVC 150 (489)
Q Consensus 84 GG~s~G~~D~~~~~l~~~G-------~~~f~~v~~kPGkp~~------~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~ 150 (489)
||+|+|++|+|++++++++ +.+||++.++|+ |+. +|..++. ..+++||+|||||.++..+
T Consensus 77 GG~g~~~~D~t~ea~~~~~~~~l~g~~~~~~~~~~~~~-p~a~l~r~~aG~~~~~------~~~~~v~~LPG~P~~~~~~ 149 (167)
T 2g2c_A 77 GGTGIRAKNQTPEATASFIHTRCEGLEQQILIHGSTHT-HLAGLSRGIVGVTGRD------DHAALIVNAPSSSGGITDT 149 (167)
T ss_dssp SCCSSSTTCCHHHHHHTTCSEECHHHHHHHHHHC--------CCCCCCEEESCSS------TTCCEEEEECSSHHHHHHH
T ss_pred CCCCCCCCcChHHHHHHHhCCcCccHHHHHHHhcCCcC-CceeeeccccceecCC------CCCEEEEECCCCHHHHHHH
Confidence 9999999999999999973 456889999998 653 4554310 0128999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 011276 151 FHLYIVPAIRHLSG 164 (489)
Q Consensus 151 ~~~~v~P~L~~l~G 164 (489)
|+ ++.|+|+++++
T Consensus 150 ~~-~v~P~L~~~~~ 162 (167)
T 2g2c_A 150 WA-VISPVIPNIFE 162 (167)
T ss_dssp HH-HHGGGHHHHHH
T ss_pred HH-HHHHHHHHHHH
Confidence 99 99999998865
No 27
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=99.96 E-value=1.1e-29 Score=263.72 Aligned_cols=169 Identities=19% Similarity=0.300 Sum_probs=148.9
Q ss_pred CCCccccCCcEEEEEEecccccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEEEeCCccc-------CCCcc
Q 011276 235 ATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGAGP 307 (489)
Q Consensus 235 ~g~~~i~~G~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii~~GdEi~-------~G~~~ 307 (489)
+|+..+++|+.+....+..|++.|+.+|+| |+++|++||+||||+. .|++.
T Consensus 148 ~G~~ll~~G~~l~p~~i~llas~G~~~V~V----------------------~~~prv~IistGdEl~~~g~~~~~G~i~ 205 (402)
T 1uz5_A 148 KGRLLVKKGERLGFKQTALLSAVGINKVKV----------------------FRKPKVAVISTGNEIVPPGNELKPGQIY 205 (402)
T ss_dssp TTCEEECTTCBCCHHHHHHHHHTTCCEEEE----------------------ECCCEEEEEEECTTEECTTSCCCTTCEE
T ss_pred CCCEEEcCCCEECHHHHHHHHhCCCceeee----------------------cCCCEEEEEEcCccccCCCCCCCCCcEE
Confidence 344455667777778888999999999999 9999999999999996 79999
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhcccccc
Q 011276 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPG 387 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~g 387 (489)
|+|+++++++|+++ |+++..+.+++||++.|+++|+++++ ++|+||||||+|+|++|+|+++++++++
T Consensus 206 DsN~~~L~~~l~~~-----G~~v~~~~iv~Dd~~~i~~~l~~a~~--~~DlVittGG~s~g~~D~t~~al~~~G~----- 273 (402)
T 1uz5_A 206 DINGRALCDAINEL-----GGEGIFMGVARDDKESLKALIEKAVN--VGDVVVISGGASGGTKDLTASVIEELGE----- 273 (402)
T ss_dssp CCHHHHHHHHHHHH-----TSEEEEEEEECSSHHHHHHHHHHHHH--HCSEEEEECCC-----CHHHHHHHHHSE-----
T ss_pred cchHHHHHHHHHhC-----CCeEEEEEEeCCCHHHHHHHHHHHhh--CCCEEEEcCCCCCCCcccHHHHHHhhCC-----
Confidence 99999999999999 99999999999999999999999987 7999999999999999999999999973
Q ss_pred HHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHH-HHHHHHHHh
Q 011276 388 LLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 444 (489)
Q Consensus 388 ~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i-lp~l~~~~~ 444 (489)
+.|++++++||+++ ++|.+++++||+|||||.+++.+|+.+ .|.|.++..
T Consensus 274 ----~~f~~va~~PG~p~---~~g~~~~~~v~~LPG~P~sa~~~~~~~v~P~L~~~~g 324 (402)
T 1uz5_A 274 ----VKVHGIAIQPGKPT---IIGVIKGKPVFGLPGYPTSCLTNFTLLVVPLLLRALG 324 (402)
T ss_dssp ----EEEECBSEESCTTC---EEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----EEEeeEeecCCCCE---EEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 46899999999996 889999999999999999999999986 588777654
No 28
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=99.96 E-value=2e-29 Score=262.60 Aligned_cols=170 Identities=20% Similarity=0.284 Sum_probs=155.1
Q ss_pred CCCccccCCcEEEEEEecccccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEEEeCCccc-------CCCcc
Q 011276 235 ATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGAGP 307 (489)
Q Consensus 235 ~g~~~i~~G~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii~~GdEi~-------~G~~~ 307 (489)
+|+..+++|+.+....+..|++.|+.+|+| |+++|++||+||||+. .|++.
T Consensus 145 ~G~~vl~~G~~l~p~~i~llas~G~~~V~V----------------------~~~~rv~iistGdEl~~~g~~~~~G~i~ 202 (411)
T 1g8l_A 145 AGAVVFPAGTRLTTAELPVIASLGIAEVPV----------------------IRKVRVALFSTGDELQLPGQPLGDGQIY 202 (411)
T ss_dssp TTSEEECTTCBCCTTTHHHHHHTTCCEEEE----------------------ECCCEEEEEEECTTEECTTSCCCSSCEE
T ss_pred CCCEEEcCCcEECHHHHHHHHhCCCceEEe----------------------cCCCEEEEEEcCccccCCCCCCCCCcEE
Confidence 344456667777778888999999999999 9999999999999998 89999
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhcccccc
Q 011276 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPG 387 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~g 387 (489)
|+|+++++++|+++ |+++..+.+++||.+.|+++|+++++ ++|+||||||+|+|++|+|+++++++++
T Consensus 203 dsn~~~L~~~l~~~-----G~~v~~~~iv~Dd~~~i~~al~~a~~--~~DlvittGG~s~g~~D~t~~al~~~G~----- 270 (411)
T 1g8l_A 203 DTNRLAVHLMLEQL-----GCEVINLGIIRDDPHALRAAFIEADS--QADVVISSGGVSVGEADYTKTILEELGE----- 270 (411)
T ss_dssp CCHHHHHHHHHHHT-----TCEEEEEEEECSCHHHHHHHHHHHHH--HCSEEEECSSSCSSSCSHHHHHHHHHSE-----
T ss_pred cCchHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHhh--cCCEEEECCCCCCCCcccHHHHHHhcCc-----
Confidence 99999999999999 99999999999999999999999987 8999999999999999999999999973
Q ss_pred HHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHH-HHHHHHHHHhh
Q 011276 388 LLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEA-LLPALKHALKQ 445 (489)
Q Consensus 388 ~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~-ilp~l~~~~~~ 445 (489)
+.|++++++||+++ ++|.+++++||+|||||.+++.+|+. ++|.|.++...
T Consensus 271 ----i~f~~va~~PG~p~---~~g~~~~~~v~~LPGnP~sa~~~~~~~v~P~L~~l~g~ 322 (411)
T 1g8l_A 271 ----IAFWKLAIKPGKPF---AFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGN 322 (411)
T ss_dssp ----EEEEEBSEESCCEE---EEEECSSSEEEECCSSHHHHHHHHHHTHHHHHHHHHTC
T ss_pred ----EEEEEEEeeCCCcE---EEEEECCEEEEEcCCChHHHHHHHHHHHHHHHHHHhCC
Confidence 46899999999997 88999999999999999999999998 46988877653
No 29
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=99.95 E-value=5.2e-29 Score=234.31 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=117.3
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCe--EEEEEeecCCHHHHHHHHHHHHhc-CCCEEEEe
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCK--LIDLGIVRDDEEELEKTLDNAFSA-GIDILLTS 83 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~--~~~~~~v~Dd~~~i~~~l~~~~~~-~~Dlvitt 83 (489)
++|||+||+||||+. .||++|+|+++|+++|+++|++ +..+.+++||++.|+++|++++++ ++|+||||
T Consensus 2 ~~~rv~IIttGdEl~--------~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitT 73 (195)
T 1di6_A 2 ATLRIGLVSISDRAS--------SGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTT 73 (195)
T ss_dssp CCEEEEEEEEECC---------------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CCCEEEEEEECCCCC--------CCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 478999999999997 7999999999999999999998 789999999999999999999873 49999999
Q ss_pred CCCcCCCCCchHHHHHhcC-------CeEEeeeeecCCCcee-----eEEEccCCCCccccccEEEEEcCCChHHHHHHH
Q 011276 84 GGVSMGDKDFVKPLLQKKG-------TIYFNKVCMKPGKPLT-----FAEINIKPTDDVMVNKILAFGLPGNPVSCIVCF 151 (489)
Q Consensus 84 GG~s~G~~D~~~~~l~~~G-------~~~f~~v~~kPGkp~~-----~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~ 151 (489)
||+|+|++|+|++++++++ +..|+++.++|+.+.+ +|..+ +++||+|||||.|+..+|
T Consensus 74 GGtg~g~~D~T~ea~~~~~~~~l~g~~~~~~~~~~~~~p~a~lsr~~aG~~~----------~~~v~~LPG~P~a~~~~~ 143 (195)
T 1di6_A 74 GGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQVGVIRK----------QALILNLPGQPKSIKETL 143 (195)
T ss_dssp SCCSSSTTCCHHHHHHHTCSEECHHHHHHHHHHHHTTCGGGGGCCCCEEEET----------TEEEEEECSSHHHHHHHH
T ss_pred CCCCCCCCccHHHHHHHHhcccCccHHHHHHHhcCCCCCcceeccceEEEEC----------CEEEEECCCCHHHHHHHH
Confidence 9999999999999999984 4568999999965433 34443 599999999999999999
Q ss_pred HHH-----------HHHHHHHhcC
Q 011276 152 HLY-----------IVPAIRHLSG 164 (489)
Q Consensus 152 ~~~-----------v~P~L~~l~G 164 (489)
+.| +.|+|.++..
T Consensus 144 ~~~~~~~~~~~~~~v~p~l~~~~~ 167 (195)
T 1di6_A 144 EGVKDAEGNVVVHGIFASVPYCIQ 167 (195)
T ss_dssp HEEECTTSCEEEECGGGGHHHHHH
T ss_pred HHHHhhcccchhhhHHHHHHHHHH
Confidence 998 8888876654
No 30
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=2.2e-28 Score=227.45 Aligned_cols=156 Identities=19% Similarity=0.324 Sum_probs=128.5
Q ss_pred eeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHh-cCCCEEEE
Q 011276 4 KVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS-AGIDILLT 82 (489)
Q Consensus 4 ~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~-~~~Dlvit 82 (489)
...+++||+||++|||..+. . ...|+++|+|+++|+++|+++|+++..+.+++||++.|.++++++.. +++|+|||
T Consensus 11 ~~~~~~~v~iitvsd~~~~~--~-~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVit 87 (178)
T 3iwt_A 11 NAPKSLNFYVITISTSRYEK--L-LKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIS 87 (178)
T ss_dssp --CCCCEEEEEEECHHHHHH--H-HTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEE
T ss_pred cCCCCCEEEEEEEcCCCccc--c-ccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 45678999999999987531 1 55899999999999999999999999999999999999999997753 35899999
Q ss_pred eCCCcCCCCCchHHHHHhcCC-------eEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHH
Q 011276 83 SGGVSMGDKDFVKPLLQKKGT-------IYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYI 155 (489)
Q Consensus 83 tGG~s~G~~D~~~~~l~~~G~-------~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v 155 (489)
|||+|+|++|+|++++++++. ..|++++++||++..++....+..+ ..++++||+|||||.++..+|+.+|
T Consensus 88 tGG~g~~~~D~t~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~G--~~~~~~i~~LPG~P~~~~~~~~~~v 165 (178)
T 3iwt_A 88 TGGTGYSPTDITVETIRKLFDREIEGFSDVFRLVSFNDPEVKAAAYLTKASAG--IIGKKIVYLLPGSPDAVKLALKELI 165 (178)
T ss_dssp ESCCSSSTTCCHHHHHGGGCSEECHHHHHHHHHHHHTSTTTGGGGGGCCCEEE--EETTEEEEEECSCHHHHHHHHHHTH
T ss_pred cCCcccCCCCchHHHHHHhhhcccccHHHHHHHHHhcccccccccccccccee--eECCEEEEECCCCHHHHHHHHHHHH
Confidence 999999999999999998753 4468899999987665422100000 0125999999999999999999999
Q ss_pred HHHHHHhcC
Q 011276 156 VPAIRHLSG 164 (489)
Q Consensus 156 ~P~L~~l~G 164 (489)
.|+|.++..
T Consensus 166 ~P~L~h~~~ 174 (178)
T 3iwt_A 166 LPEVGHLVY 174 (178)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 31
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=99.95 E-value=7.2e-29 Score=259.28 Aligned_cols=172 Identities=16% Similarity=0.274 Sum_probs=152.1
Q ss_pred cCCCCccccCCcEEEEEEecccccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEEEeCCccc-------CCC
Q 011276 233 LPATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGA 305 (489)
Q Consensus 233 ip~g~~~i~~G~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii~~GdEi~-------~G~ 305 (489)
+.+|...+++|+.+....+..|++.|+.+|+| |+++||+||+||||+. .|+
T Consensus 147 i~~G~~ll~~G~~l~p~~iglLas~G~~~v~V----------------------~~~prv~IistGdEl~~~g~~~~~G~ 204 (419)
T 2fts_A 147 IKRGECVLAKGTHMGPSEIGLLATVGVTEVEV----------------------NKFPVVAVMSTGNELLNPEDDLLPGK 204 (419)
T ss_dssp BCTTCEEECTTCBCCHHHHHHHHHHTCCEEEE----------------------ECCCCEEEEEECTTEECTTSCCCTTC
T ss_pred cCCCCEEECCCCCcCHHHHHHHHhCCCCeeEe----------------------cCCCEEEEEEechhccCCCCCCCCCc
Confidence 34455667778888888899999999999999 9999999999999998 799
Q ss_pred ccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHH-Hhhccc
Q 011276 306 GPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATK-ELIERE 384 (489)
Q Consensus 306 ~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~-~~~~~~ 384 (489)
+.|+|+++++++|+++ |+++..+.+++||++.|+++|+++++ ++|+||||||+|+|++|+|+++++ +++..
T Consensus 205 i~dsN~~~L~~~l~~~-----G~~v~~~~iv~Dd~~~i~~~l~~a~~--~~DlVittGG~s~g~~D~t~~al~~~lg~~- 276 (419)
T 2fts_A 205 IRDSNRSTLLATIQEH-----GYPTINLGIVGDNPDDLLNALNEGIS--RADVIITSGGVSMGEKDYLKQVLDIDLHAQ- 276 (419)
T ss_dssp EECCHHHHHHHHHHTT-----TCCEEEEEEECSSHHHHHHHHHHHHH--HCSEEEEESCCSSSCCHHHHHHHHTTTCCE-
T ss_pred EecCchHHHHHHHHHC-----CCEEEEEeecCCCHHHHHHHHHHHHh--cCCEEEEcCCCcCCCcccHHHHHHHHcCCc-
Confidence 9999999999999999 99999999999999999999999987 799999999999999999999995 44432
Q ss_pred cccHHHHHHhcccccCCCccccccceeEEC----CEEEEEcCCCHHHHHHHHHHH-HHHHHHHHh
Q 011276 385 TPGLLYVMMQESLKVTPFAMLSRSAAGIRG----STLIINMPGNPNAVAECMEAL-LPALKHALK 444 (489)
Q Consensus 385 l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~----~~~v~~LPG~P~a~~~~~~~i-lp~l~~~~~ 444 (489)
+.|++++++||+|+ .+|..+ +++||+|||||.+++.+|+.+ +|.|.++..
T Consensus 277 -------~~f~~v~~~PG~p~---~~g~~~~~~~~~~v~~LPG~P~sa~~~~~~~v~P~L~~~~g 331 (419)
T 2fts_A 277 -------IHFGRVFMKPGLPT---TFATLDIDGVRKIIFALPGNPVSAVVTCNLFVVPALRKMQG 331 (419)
T ss_dssp -------EEESEEECBSCTTC---EEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred -------eEEeEEecCCCCce---EEEEEeecCCCeEEEECCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 46899999999998 455442 699999999999999999975 698877654
No 32
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=99.95 E-value=2.4e-27 Score=218.02 Aligned_cols=144 Identities=22% Similarity=0.276 Sum_probs=122.4
Q ss_pred ceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011276 289 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
++|++||+||||++.|++.|+|+++++++|++. |+++.++.+|+||++.|+++|+++++ ++|+||||||+|+|
T Consensus 3 ~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~-----G~~v~~~~iv~Dd~~~I~~~l~~a~~--~~DlVittGG~g~~ 75 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVNTNAAFIGNFLTYH-----GYQVRRGFVVMDDLDEIGWAFRVALE--VSDLVVSSGGLGPT 75 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHT-----TCEEEEEEEECSCHHHHHHHHHHHHH--HCSEEEEESCCSSS
T ss_pred CCEEEEEEEcccccCCcEEeHHHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHHh--cCCEEEEcCCCcCC
Confidence 489999999999999999999999999999999 99999999999999999999999987 79999999999999
Q ss_pred CCCChHHHHHHhhccccccHHHHHHh-----cccccC----CCcccccc---------ce-eE---ECCEEEEEcCCCHH
Q 011276 369 PRDVTPEATKELIERETPGLLYVMMQ-----ESLKVT----PFAMLSRS---------AA-GI---RGSTLIINMPGNPN 426 (489)
Q Consensus 369 ~~D~T~eav~~~~~~~l~g~~e~~~~-----~~~~~~----p~a~l~r~---------~~-g~---~~~~~v~~LPG~P~ 426 (489)
+||+|++|+++++++++..+.+++.. .+..+. .++.++.+ .+ |+ .+++.||.|||+|.
T Consensus 76 ~~D~T~ea~a~~~~~~l~~~~e~~~~i~~~~~~~~~~~~~~k~A~~P~ga~~l~N~~g~apG~~~~~~~~~v~~lPGvP~ 155 (172)
T 3kbq_A 76 FDDMTVEGFAKCIGQDLRIDEDALAMIKKKYGQADLTPQRLKMAKIPPSCRPIENPVGTAPGLICAVGGKKVIILPGVPK 155 (172)
T ss_dssp TTCCHHHHHHHHHTCCCEECHHHHHHHHHHHC---CCHHHHGGGEECTTEEEECCSSSSSCEEEEEETTEEEEEECSSHH
T ss_pred cccchHHHHHHHcCCCeeeCHHHHHHHHHHHcCCCCChHHHhhccCCCCCEECcCCCCcCCeEEEEECCeEEEEeCCCHH
Confidence 99999999999999999876665431 122222 45555443 22 44 36789999999999
Q ss_pred HHHHHHHHHHHHH
Q 011276 427 AVAECMEALLPAL 439 (489)
Q Consensus 427 a~~~~~~~ilp~l 439 (489)
+++.||+.+.|.|
T Consensus 156 e~~~m~~~~~~~~ 168 (172)
T 3kbq_A 156 EMEALLKAMEKDI 168 (172)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998855
No 33
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=99.93 E-value=1.1e-26 Score=240.81 Aligned_cols=161 Identities=19% Similarity=0.293 Sum_probs=134.9
Q ss_pred CCCccccCCcEEEEEEecccccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEEEeCCccc---------CCC
Q 011276 235 ATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA---------SGA 305 (489)
Q Consensus 235 ~g~~~i~~G~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii~~GdEi~---------~G~ 305 (489)
+|+..+++|+.+....+..|++.|+.+|+| |+++|++||+||||+. .|+
T Consensus 150 ~G~~ll~~G~~l~p~~i~llas~G~~~V~V----------------------~~~prv~IistGdEl~~~~g~~~~~~G~ 207 (396)
T 1wu2_A 150 KGEVVLRKGTILRPQDVAMLKALGIKKVPV----------------------KVKPKVGIIITGSELIEEPSEEGFKEGK 207 (396)
T ss_dssp TTCEEECTTCBCCHHHHHHHHHTTCSEEEE----------------------ECCCEEEEEEECTTEESSCCHHHHHTTC
T ss_pred CCCEeecCCcEEcHHHHHHHHhCCCceeee----------------------cCCCEEEEEEcCcccccCCCCcccCCCc
Confidence 344456667777778888999999999999 9999999999999998 499
Q ss_pred ccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhcccc
Q 011276 306 GPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERET 385 (489)
Q Consensus 306 ~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l 385 (489)
+.|+|+++++++|+++ |+++..+.+++||++.|+++|+++++ ++|+||||||+|+|++|+ +++++ .
T Consensus 208 i~Dsn~~~L~~~l~~~-----G~~v~~~~iv~Dd~~~i~~~l~~a~~--~~DlvittGG~s~g~~D~----l~~~G-~-- 273 (396)
T 1wu2_A 208 IVETNSIMLQGLVEKF-----FGEPILYGVLPDDESIIKETLEKAKN--ECDIVLITGGSAFGDKDY----AHKFV-N-- 273 (396)
T ss_dssp EECCHHHHHHHHHHHT-----TCEEEEEEEECSCHHHHTTHHHHHHH--CSEEEECC--------CC----STTTC-C--
T ss_pred EecchHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHhh--CCCEEEEeCCCCCChhhH----HhhcC-C--
Confidence 9999999999999999 99999999999999999999999998 799999999999999999 44443 1
Q ss_pred ccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHHH-HHHHHHHh
Q 011276 386 PGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALL-PALKHALK 444 (489)
Q Consensus 386 ~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~il-p~l~~~~~ 444 (489)
+.|++++++||+++ ++| ++||+|||||.++..+|+.++ |.|.++..
T Consensus 274 ------i~f~~va~~PG~p~---~~g----~~v~~LPG~P~sa~~~~~~~v~P~L~~l~g 320 (396)
T 1wu2_A 274 ------LLFHGTTIKPGRPF---GYG----EKVFIMSGYPVSVFAQFNLFVKHALAKMVG 320 (396)
T ss_dssp ------CSEESBSEESCTTC---EEE----TTEEECCSSHHHHHHHHHHTHHHHHHHHHT
T ss_pred ------EEEeeecccCCCce---Ecc----CeEEECCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 56899999999997 556 899999999999999999965 88877654
No 34
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=99.88 E-value=4.5e-22 Score=182.89 Aligned_cols=138 Identities=19% Similarity=0.245 Sum_probs=110.7
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011276 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
++||+||+|||||+ .||++|+|+++|+++|+++|+++..+.+++||+++|+++|++++++ +|+||||||+|
T Consensus 3 ~~~v~IistGdEll--------~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~-~DlVittGG~g 73 (172)
T 3kbq_A 3 AKNASVITVGNEIL--------KGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEV-SDLVVSSGGLG 73 (172)
T ss_dssp -CEEEEEEECHHHH--------TTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHH-CSEEEEESCCS
T ss_pred CCEEEEEEEccccc--------CCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhc-CCEEEEcCCCc
Confidence 58999999999998 5999999999999999999999999999999999999999999985 99999999999
Q ss_pred CCCCCchHHHHHh-cC-CeEEeee---------------------eecCCCceeeEEEccCCCCc---c--ccccEEEEE
Q 011276 88 MGDKDFVKPLLQK-KG-TIYFNKV---------------------CMKPGKPLTFAEINIKPTDD---V--MVNKILAFG 139 (489)
Q Consensus 88 ~G~~D~~~~~l~~-~G-~~~f~~v---------------------~~kPGkp~~~a~~~~~~~~~---~--~~~~~~v~~ 139 (489)
+|++|+|++++++ +| ++.+|.- ++-|-. +.+-.|+.+. + ..+++.++.
T Consensus 74 ~~~~D~T~ea~a~~~~~~l~~~~e~~~~i~~~~~~~~~~~~~~k~A~~P~g----a~~l~N~~g~apG~~~~~~~~~v~~ 149 (172)
T 3kbq_A 74 PTFDDMTVEGFAKCIGQDLRIDEDALAMIKKKYGQADLTPQRLKMAKIPPS----CRPIENPVGTAPGLICAVGGKKVII 149 (172)
T ss_dssp SSTTCCHHHHHHHHHTCCCEECHHHHHHHHHHHC---CCHHHHGGGEECTT----EEEECCSSSSSCEEEEEETTEEEEE
T ss_pred CCcccchHHHHHHHcCCCeeeCHHHHHHHHHHHcCCCCChHHHhhccCCCC----CEECcCCCCcCCeEEEEECCeEEEE
Confidence 9999999999987 56 6666431 222222 1111122221 1 234578999
Q ss_pred cCCChHHHHHHHHHHHHHHH
Q 011276 140 LPGNPVSCIVCFHLYIVPAI 159 (489)
Q Consensus 140 LPGnP~aa~~~~~~~v~P~L 159 (489)
|||.|..+..+|+.+ .|.|
T Consensus 150 lPGvP~e~~~m~~~~-~~~~ 168 (172)
T 3kbq_A 150 LPGVPKEMEALLKAM-EKDI 168 (172)
T ss_dssp ECSSHHHHHHHHHHT-HHHH
T ss_pred eCCCHHHHHHHHHHH-Hhhc
Confidence 999999999999876 5543
No 35
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=89.29 E-value=0.53 Score=43.73 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=51.6
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011276 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
.+||++|+|+...-+ +|.|...+...+++.|+++....+-..+++++.+.|+ ++|.|+.+||-.
T Consensus 27 ~~~i~~Ip~As~~~~-----------~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~-----~ad~I~l~GG~~ 90 (206)
T 3l4e_A 27 GKTVTFIPTASTVEE-----------VTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR-----KNDFIYVTGGNT 90 (206)
T ss_dssp TCEEEEECGGGGGCS-----------CCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH-----HSSEEEECCSCH
T ss_pred CCEEEEECCCCCCCC-----------HHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH-----hCCEEEECCCCH
Confidence 589999999854311 2567788899999999987655444457776666654 389999999643
Q ss_pred CCCCCchHHHHHhcC
Q 011276 88 MGDKDFVKPLLQKKG 102 (489)
Q Consensus 88 ~G~~D~~~~~l~~~G 102 (489)
. ..-+.+++.|
T Consensus 91 ~----~l~~~L~~~g 101 (206)
T 3l4e_A 91 F----FLLQELKRTG 101 (206)
T ss_dssp H----HHHHHHHHHT
T ss_pred H----HHHHHHHHCC
Confidence 2 3444455544
No 36
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=86.86 E-value=2.6 Score=36.13 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=48.3
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011276 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
+|||.+.+.|.|.- |.-.-+++.+|+..|++++++|.- -.++++.+++.+. ++|+|..|.-.+
T Consensus 3 ~~~vvla~~~~d~H-------------diG~~~v~~~l~~~G~~Vi~lG~~-~p~e~~v~~a~~~---~~d~v~lS~~~~ 65 (137)
T 1ccw_A 3 KKTIVLGVIGSDCH-------------AVGNKILDHAFTNAGFNVVNIGVL-SPQELFIKAAIET---KADAILVSSLYG 65 (137)
T ss_dssp CCEEEEEEETTCCC-------------CHHHHHHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHH---TCSEEEEEECSS
T ss_pred CCEEEEEeCCCchh-------------HHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHhc---CCCEEEEEecCc
Confidence 57888888777654 455578999999999999999883 3367776666654 599999988654
No 37
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=85.87 E-value=15 Score=37.28 Aligned_cols=122 Identities=12% Similarity=0.103 Sum_probs=71.5
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHH--------------------------------HHHHHHHhcCCCEEEEeC
Q 011276 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELE--------------------------------KTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~--------------------------------~~l~~~~~~~~DlvittG 84 (489)
-+......++.+|++|+.+..-++..+.+. +.+.+++. ++|+||++=
T Consensus 195 iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~-~aDIVI~tv 273 (381)
T 3p2y_A 195 AGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAIT-KFDIVITTA 273 (381)
T ss_dssp HHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHh-cCCEEEECC
Confidence 355666777778888777665555443333 34666776 599999873
Q ss_pred CCc--CCCCCchHHHHHhcC-CeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCCh----HHHHHHHHHHHHH
Q 011276 85 GVS--MGDKDFVKPLLQKKG-TIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNP----VSCIVCFHLYIVP 157 (489)
Q Consensus 85 G~s--~G~~D~~~~~l~~~G-~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP----~aa~~~~~~~v~P 157 (489)
..- ..+.=++.+.++.+- .-++-.+++.+|..+-..+.+ ..+..++..+++.|.-| ..|...|..-+.|
T Consensus 274 ~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t~~~----~~~~~~gV~~~~v~nlP~~vp~tAS~~~s~~l~~ 349 (381)
T 3p2y_A 274 LVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELTEPG----RTIVHHGVTITSPLNLPATMPEHASELYAKNVTA 349 (381)
T ss_dssp CCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTT----CEEEETTEEEECCSCTGGGSHHHHHHHHHHHHHH
T ss_pred CCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccccccCC----CeEEECCEEEEeeCCCchhhHHHHHHHHHHHHHH
Confidence 221 112335688888875 455556777777643211000 00111257777777665 4455556666678
Q ss_pred HHHHhc
Q 011276 158 AIRHLS 163 (489)
Q Consensus 158 ~L~~l~ 163 (489)
+|..+.
T Consensus 350 ~l~~~~ 355 (381)
T 3p2y_A 350 LLDLLL 355 (381)
T ss_dssp HHHHHE
T ss_pred HHHHHh
Confidence 887775
No 38
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=84.80 E-value=1.7 Score=38.59 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=54.3
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
++|||.+.+.|.|.- |--.-+++.+|+..|++|++++.- -.++++.+++.+. ++|+|..|.-.
T Consensus 17 ~~~~vlla~~~gd~H-------------diG~~~va~~l~~~G~eVi~lG~~-~p~e~lv~aa~~~---~~diV~lS~~~ 79 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGH-------------DRGAKVVARALRDAGFEVVYTGLR-QTPEQVAMAAVQE---DVDVIGVSILN 79 (161)
T ss_dssp CSCEEEEEEESSSSC-------------CHHHHHHHHHHHHTTCEEECCCSB-CCHHHHHHHHHHT---TCSEEEEEESS
T ss_pred CCCEEEEEeCCCCcc-------------HHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHhc---CCCEEEEEeec
Confidence 578888888777665 455578999999999999988753 2467677666654 69999998754
Q ss_pred cCCCCCchHHHHHhc
Q 011276 87 SMGDKDFVKPLLQKK 101 (489)
Q Consensus 87 s~G~~D~~~~~l~~~ 101 (489)
. ...+.+++.++.+
T Consensus 80 ~-~~~~~~~~~i~~L 93 (161)
T 2yxb_A 80 G-AHLHLMKRLMAKL 93 (161)
T ss_dssp S-CHHHHHHHHHHHH
T ss_pred h-hhHHHHHHHHHHH
Confidence 4 3344555555443
No 39
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=83.74 E-value=3.1 Score=38.22 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=54.9
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
++++|.+.+.+.|+ .|--..+++.+|+..|+++++++. .-..+.+.+++++. ++|+|..|.-.
T Consensus 87 ~~~~vll~~~~gd~-------------H~iG~~~va~~l~~~G~~v~~LG~-~vp~~~l~~~~~~~---~~d~v~lS~~~ 149 (210)
T 1y80_A 87 SVGKIVLGTVKGDL-------------HDIGKNLVAMMLESGGFTVYNLGV-DIEPGKFVEAVKKY---QPDIVGMSALL 149 (210)
T ss_dssp CCCEEEEEEBTTCC-------------CCHHHHHHHHHHHHTTCEEEECCS-SBCHHHHHHHHHHH---CCSEEEEECCS
T ss_pred CCCEEEEEeCCCcc-------------cHHHHHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHHc---CCCEEEEeccc
Confidence 35566666655554 455667999999999999999986 44577787777665 59999999865
Q ss_pred cCCCCCchHHHHHhc
Q 011276 87 SMGDKDFVKPLLQKK 101 (489)
Q Consensus 87 s~G~~D~~~~~l~~~ 101 (489)
.. ..+.+++.++.+
T Consensus 150 ~~-~~~~~~~~i~~l 163 (210)
T 1y80_A 150 TT-TMMNMKSTIDAL 163 (210)
T ss_dssp GG-GTHHHHHHHHHH
T ss_pred cc-cHHHHHHHHHHH
Confidence 43 445566666554
No 40
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=81.59 E-value=25 Score=35.80 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=51.5
Q ss_pred HHHHHHHhcCCCEEEEeCCCc--CCCCCchHHHHHhcC-CeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCC
Q 011276 67 KTLDNAFSAGIDILLTSGGVS--MGDKDFVKPLLQKKG-TIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGN 143 (489)
Q Consensus 67 ~~l~~~~~~~~DlvittGG~s--~G~~D~~~~~l~~~G-~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGn 143 (489)
+.+.+++. ++|+||++=..- ..+.=++.+.++.+- .-++-.+++.+|...-..+.+ ..+..++..+++.+.-
T Consensus 267 ~~l~e~l~-~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~~~----~~~~~~GV~~~gv~nl 341 (405)
T 4dio_A 267 ALVAEHIA-KQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAEAG----KVTEVGGVRIVGHLNV 341 (405)
T ss_dssp HHHHHHHH-TCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCCTT----EEEEETTEEEEECSSG
T ss_pred hHHHHHhc-CCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccCCC----CeEEECCEEEEEeCCC
Confidence 45677776 599999873222 122336788888875 445555676666543221000 0000124667766655
Q ss_pred h----HHHHHHHHHHHHHHHHHhc
Q 011276 144 P----VSCIVCFHLYIVPAIRHLS 163 (489)
Q Consensus 144 P----~aa~~~~~~~v~P~L~~l~ 163 (489)
| ..+...|..-+.|+|..+.
T Consensus 342 P~~vp~tAS~~ls~~~~~~l~~l~ 365 (405)
T 4dio_A 342 AGRIAASASLLYAKNLVTFLETMV 365 (405)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHH
Confidence 4 5555556666678877765
No 41
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=81.48 E-value=8.6 Score=36.57 Aligned_cols=77 Identities=13% Similarity=0.092 Sum_probs=55.7
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
++++|.+.+.+.|+- |--..+++.+|+..|++|+++|.-- .++.+.+++++. ++|+|..|.-.
T Consensus 122 ~~~~vlla~~~gd~H-------------diG~~iva~~L~~~G~~Vi~LG~~v-p~e~l~~~~~~~---~~d~V~lS~l~ 184 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVH-------------DIGKNIVTALLRANGYNVVDLGRDV-PAEEVLAAVQKE---KPIMLTGTALM 184 (258)
T ss_dssp CSCEEEEEECTTCCC-------------CHHHHHHHHHHHHTTCEEEEEEEEC-CSHHHHHHHHHH---CCSEEEEECCC
T ss_pred CCCeEEEEeCCCCcc-------------HHHHHHHHHHHHHCCCEEEECCCCC-CHHHHHHHHHHc---CCCEEEEEeec
Confidence 467777766655544 5556889999999999999999753 456676666654 59999999875
Q ss_pred cCCCCCchHHHHHhc
Q 011276 87 SMGDKDFVKPLLQKK 101 (489)
Q Consensus 87 s~G~~D~~~~~l~~~ 101 (489)
. ...+.+++.++.+
T Consensus 185 ~-~~~~~~~~~i~~l 198 (258)
T 2i2x_B 185 T-TTMYAFKEVNDML 198 (258)
T ss_dssp T-TTTTHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHH
Confidence 5 4456677776654
No 42
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=72.03 E-value=0.96 Score=43.68 Aligned_cols=130 Identities=20% Similarity=0.226 Sum_probs=73.3
Q ss_pred eeCCeEEEEe----cCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecC-CHHHHHHHHHHHHh--cCCC
Q 011276 6 YRTPTIAVLS----TGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRD-DEEELEKTLDNAFS--AGID 78 (489)
Q Consensus 6 ~r~prV~iis----tGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~D-d~~~i~~~l~~~~~--~~~D 78 (489)
..|+.|.-+- +|.++- +.|+..+.+..+|.+. +++.....+-| .-++..+.++++++ .+ |
T Consensus 4 ~~~~~v~wl~~~~C~GC~is-----------ll~~~~P~~d~ll~~~-i~l~~~~tlm~a~g~~a~~~~~~~~~~~~~-d 70 (264)
T 1yqw_A 4 KHRPSVVWLHNAECTGCTEA-----------AIRTIKPYIDALILDT-ISLDYQETIMAAAGEAAEAALHQALEGKDG-Y 70 (264)
T ss_dssp CCCCEEEEEECBCCSHHHHH-----------HTTCBTTBHHHHHHHT-CEEEEETTTCSCCHHHHHHHHHHHHTCTTC-E
T ss_pred CCCceEEEEeCCccCcHHHH-----------HHHcCCCCHHHHHhcc-eEEEEecchhhhchhhHHHHHHHHhccCCC-e
Confidence 3567777773 344432 3466667787775555 66666655433 34556677777765 25 9
Q ss_pred EEEEeCCCcCCCC------------CchHHHHHhcCCeE-------Eeeeee-cCCCceeeEEEccCCCCccccccEEEE
Q 011276 79 ILLTSGGVSMGDK------------DFVKPLLQKKGTIY-------FNKVCM-KPGKPLTFAEINIKPTDDVMVNKILAF 138 (489)
Q Consensus 79 lvittGG~s~G~~------------D~~~~~l~~~G~~~-------f~~v~~-kPGkp~~~a~~~~~~~~~~~~~~~~v~ 138 (489)
++|.+|.+..... +.++++..+---++ +-||.- +| .+....-++. ...++|+
T Consensus 71 il~VeG~V~~~~~g~~~~~~g~~~~~~~~~~~~~~k~VIA~GsCA~~GGi~a~~~-n~~~~~gv~~-------v~~~PVi 142 (264)
T 1yqw_A 71 YLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKP-NPSQAKGVSE-------ALGVKTI 142 (264)
T ss_dssp EEEEESBEECGGGGTTBEETTEEHHHHHHHHHHTCSCEEEESHHHHHCCGGGSTT-CTTCEECHHH-------HHTSCCE
T ss_pred EEEEeCCcccCCCccceeeCChHHHHHHHHHhcCCCEEEEeccccccCCccCCCC-CCcccccccc-------cCCCCEE
Confidence 9999999988643 33333333321122 123322 22 2222111110 0136789
Q ss_pred EcCCChHHHHHHHHHHHH
Q 011276 139 GLPGNPVSCIVCFHLYIV 156 (489)
Q Consensus 139 ~LPGnP~aa~~~~~~~v~ 156 (489)
.+||.|......+..++.
T Consensus 143 ~IPGCPP~Pe~i~~~l~~ 160 (264)
T 1yqw_A 143 NIPGCPPNPINFVGAVVH 160 (264)
T ss_dssp EECSSSCCHHHHHHHHHH
T ss_pred EeeCCCCCHHHHHHHHHH
Confidence 999999998877766643
No 43
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=70.28 E-value=14 Score=32.82 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=31.3
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011276 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
++|...+..+|++.|+++..... .++.+.+ .. . ++|.||.+||.++
T Consensus 10 ~~~~~~~~~~l~~~G~~~~~~~~-~~~~~~~----~~--~-~~dglil~Gg~~~ 55 (189)
T 1wl8_A 10 GQYVHRIWRTLRYLGVETKIIPN-TTPLEEI----KA--M-NPKGIIFSGGPSL 55 (189)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEET-TCCHHHH----HH--T-CCSEEEECCCSCT
T ss_pred CchHHHHHHHHHHCCCeEEEEEC-CCChHHh----cc--c-CCCEEEECCCCCh
Confidence 56788999999999998875432 1222222 21 2 5999999999733
No 44
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=69.72 E-value=4.2 Score=38.03 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=41.2
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
..+||+||.|+.- .+. +|.|...+...+++.|+++..... .+|+ . +.+. +||.|+..||.
T Consensus 30 ~~~~i~iI~~a~~---~~~--------~~~~~~~~~~al~~lG~~~~~v~~-~~d~---~----~~l~-~ad~I~lpGG~ 89 (229)
T 1fy2_A 30 GRRSAVFIPFAGV---TQT--------WDEYTDKTAEVLAPLGVNVTGIHR-VADP---L----AAIE-KAEIIIVGGGN 89 (229)
T ss_dssp TCCEEEEECTTCC---SSC--------HHHHHHHHHHHHGGGTCEEEETTS-SSCH---H----HHHH-HCSEEEECCSC
T ss_pred CCCeEEEEECCCC---CCC--------HHHHHHHHHHHHHHCCCEEEEEec-cccH---H----HHHh-cCCEEEECCCc
Confidence 4689999999852 111 367888888899999998754422 2432 1 2333 38999999975
Q ss_pred c
Q 011276 87 S 87 (489)
Q Consensus 87 s 87 (489)
+
T Consensus 90 ~ 90 (229)
T 1fy2_A 90 T 90 (229)
T ss_dssp H
T ss_pred H
Confidence 4
No 45
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=69.51 E-value=4.7 Score=35.86 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=59.8
Q ss_pred HHHHHHccccccCCcEEEEEEEcC----CCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccccccHH
Q 011276 314 AVSVVNSSSEKLGGAKVVATDVVP----DDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLL 389 (489)
Q Consensus 314 l~~~l~~~~~~~~G~~v~~~~~v~----Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~g~~ 389 (489)
+.+.|++. |++|..++.-. .|.-.+...+.+.+....+|.-|+..|||.|- +=+.+| .||+.
T Consensus 21 i~~~L~~~-----G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~--------siaANK-v~GIR 86 (162)
T 2vvp_A 21 IIEHLKQT-----GHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGSGNGE--------QIAANK-VPGAR 86 (162)
T ss_dssp HHHHHHHT-----TCEEEECSCCSCCTTCCHHHHHHHHHHHHHHSTTCEEEEEESSSHHH--------HHHHHT-STTCC
T ss_pred HHHHHHHC-----CCEEEEeCCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcHHH--------HHHHhc-CCCeE
Confidence 44556666 99999998643 35778888888777666899999999999652 222222 22221
Q ss_pred HHHHhcccccCC-CccccccceeEECCEEEEEcCC---CHHHHHHHHHHHH
Q 011276 390 YVMMQESLKVTP-FAMLSRSAAGIRGSTLIINMPG---NPNAVAECMEALL 436 (489)
Q Consensus 390 e~~~~~~~~~~p-~a~l~r~~~g~~~~~~v~~LPG---~P~a~~~~~~~il 436 (489)
..+-..+ .+. .+-..|+..|++|++ -+..++.+++.++
T Consensus 87 -----AAl~~d~~sA~----~ar~hNnaNVL~lG~rvig~elA~~iv~~fL 128 (162)
T 2vvp_A 87 -----CALAWSVQTAA----LAREHNNAQLIGIGGRMHTVAEALAIVDAFV 128 (162)
T ss_dssp -----EEECCSHHHHH----HHHHTTCCSEEEEEGGGSCHHHHHHHHHHHH
T ss_pred -----EEEeCCHHHHH----HHHHhCCCcEEEEcccccCHHHHHHHHHHHH
Confidence 0000011 111 223358889999999 5555555555444
No 46
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=68.91 E-value=5.8 Score=36.56 Aligned_cols=63 Identities=25% Similarity=0.326 Sum_probs=44.5
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC
Q 011276 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 364 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG 364 (489)
...++++|.++... .-.|.|...+.+.+++. |+++..+.+-..+.+++.+.|+ ++|.|+..||
T Consensus 26 ~~~~i~~Ip~As~~---~~~~~~~~s~~~a~~~l-----G~~v~~~~i~~~~~~~~~~~l~------~ad~I~l~GG 88 (206)
T 3l4e_A 26 QGKTVTFIPTASTV---EEVTFYVEAGKKALESL-----GLLVEELDIATESLGEITTKLR------KNDFIYVTGG 88 (206)
T ss_dssp TTCEEEEECGGGGG---CSCCHHHHHHHHHHHHT-----TCEEEECCTTTSCHHHHHHHHH------HSSEEEECCS
T ss_pred CCCEEEEECCCCCC---CCHHHHHHHHHHHHHHc-----CCeEEEEEecCCChHHHHHHHH------hCCEEEECCC
Confidence 35899999876432 12255677788888888 9986655444467777777665 4799999885
No 47
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=66.68 E-value=6.5 Score=34.94 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCeEEEEEeecC----CHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011276 40 MLLAAAMQQHCKLIDLGIVRD----DEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~D----d~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
.|...|++.|++|.+++.-.+ |.-.+...+.+++. .++|.-|+..|||.|
T Consensus 20 ~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG 74 (162)
T 2vvp_A 20 RIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGSGNG 74 (162)
T ss_dssp HHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHHSTTCEEEEEESSSHH
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcHH
Confidence 367788899999999996432 46666666666644 358999999999976
No 48
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=66.43 E-value=8.7 Score=34.32 Aligned_cols=100 Identities=11% Similarity=0.121 Sum_probs=59.8
Q ss_pred HHHHHHHccccccCCcEEEEEEEcC---CCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccccccHH
Q 011276 313 RAVSVVNSSSEKLGGAKVVATDVVP---DDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLL 389 (489)
Q Consensus 313 ~l~~~l~~~~~~~~G~~v~~~~~v~---Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~g~~ 389 (489)
.+.+.|++. |++|..++.-. .|..++...+.+++....+|.-|+..|||.+- +=+.++ +||+.
T Consensus 37 ~i~~~L~~~-----G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~--------sIaANK-v~GIR 102 (169)
T 3ph3_A 37 EIADFLKKR-----GYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGI--------SIAANK-VPGIR 102 (169)
T ss_dssp HHHHHHHHT-----TCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHH--------HHHHTT-STTCC
T ss_pred HHHHHHHHC-----CCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHH--------HHHhhc-CCCeE
Confidence 444555655 99999987643 46778888888887767899999999999652 222222 22221
Q ss_pred HHHHhcccccCC-CccccccceeEECCEEEEEcCCCHHHHHHHHHHH
Q 011276 390 YVMMQESLKVTP-FAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL 435 (489)
Q Consensus 390 e~~~~~~~~~~p-~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i 435 (489)
- .+-..+ .+. .+-..|+..|++|++--.....+.+.+
T Consensus 103 A-----Alc~d~~sA~----~aR~hNnANVL~lG~Rvig~~lA~~Iv 140 (169)
T 3ph3_A 103 A-----AVCTNSYMAR----MSREHNDANILALGERVVGLDLALDIV 140 (169)
T ss_dssp E-----EECSSHHHHH----HHHHTTCCSEEEEETTTSCHHHHHHHH
T ss_pred E-----EEeCCHHHHH----HHHHhCCCcEEEEcccccCHHHHHHHH
Confidence 0 000011 111 223358889999998765554444433
No 49
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=66.16 E-value=10 Score=35.02 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=52.4
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
+++||.+.+.+.|+- |---.++..+|+..|++|+++|.-- .++.+.+++++. ++|+|..||..
T Consensus 91 ~~~~vll~~v~gd~H-------------diG~~iv~~~l~~~G~~Vi~LG~~v-p~e~iv~~~~~~---~~d~v~l~~S~ 153 (215)
T 3ezx_A 91 EAGLAITFVAEGDIH-------------DIGHRLVTTMLGANGFQIVDLGVDV-LNENVVEEAAKH---KGEKVLLVGSA 153 (215)
T ss_dssp -CCEEEEEECTTCCC-------------CHHHHHHHHHHHHTSCEEEECCSSC-CHHHHHHHHHHT---TTSCEEEEEEC
T ss_pred CCCeEEEEeCCCChh-------------HHHHHHHHHHHHHCCCeEEEcCCCC-CHHHHHHHHHHc---CCCEEEEEchh
Confidence 457777766655554 5556789999999999999998732 256666666653 59999995544
Q ss_pred cCC-CCCchHHHHHhc
Q 011276 87 SMG-DKDFVKPLLQKK 101 (489)
Q Consensus 87 s~G-~~D~~~~~l~~~ 101 (489)
..+ ..+.+++.++.+
T Consensus 154 l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 154 LMTTSMLGQKDLMDRL 169 (215)
T ss_dssp SSHHHHTHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHH
Confidence 443 234566665554
No 50
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=64.44 E-value=5 Score=39.13 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=37.1
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHC-KLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~-~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
++||++|+|-..- .+.........++++|+ ++..+. +.+..+.-...+.+.+. +||.|+.+||-
T Consensus 56 ~~~I~~IptAs~~-------------~~~~~~~~~~~f~~lG~~~v~~L~-i~~r~~a~~~~~~~~l~-~ad~I~v~GGn 120 (291)
T 3en0_A 56 DAIIGIIPSASRE-------------PLLIGERYQTIFSDMGVKELKVLD-IRDRAQGDDSGYRLFVE-QCTGIFMTGGD 120 (291)
T ss_dssp GCEEEEECTTCSS-------------HHHHHHHHHHHHHHHCCSEEEECC-CCSGGGGGCHHHHHHHH-HCSEEEECCSC
T ss_pred CCeEEEEeCCCCC-------------hHHHHHHHHHHHHHcCCCeeEEEE-ecCccccCCHHHHHHHh-cCCEEEECCCC
Confidence 4789999886531 12334455778889999 454443 32111111122333444 38999999985
Q ss_pred c
Q 011276 87 S 87 (489)
Q Consensus 87 s 87 (489)
.
T Consensus 121 t 121 (291)
T 3en0_A 121 Q 121 (291)
T ss_dssp H
T ss_pred H
Confidence 3
No 51
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=64.01 E-value=8.2 Score=33.79 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=61.6
Q ss_pred HHHHHHHccccccCCcEEEEEEEc---CCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccccccHH
Q 011276 313 RAVSVVNSSSEKLGGAKVVATDVV---PDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLL 389 (489)
Q Consensus 313 ~l~~~l~~~~~~~~G~~v~~~~~v---~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~g~~ 389 (489)
.+.+.|++. |++|..++.- +.|...+...+.+.+....+|.-|+..|||.+- +=+.++ .||+.
T Consensus 18 ~i~~~L~~~-----G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~--------siaANK-v~GIR 83 (149)
T 2vvr_A 18 EIVAHLVER-----GVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVGI--------SIAANK-FAGIR 83 (149)
T ss_dssp HHHHHHHHT-----TCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHH--------HHHHHT-STTCC
T ss_pred HHHHHHHHC-----CCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcHHH--------HHHHhc-CCCeE
Confidence 466677777 9999999763 346788888888887766899999999999652 222221 22221
Q ss_pred HHHHhcccccCC-CccccccceeEECCEEEEEcCC---CHHHHHHHHHHHH
Q 011276 390 YVMMQESLKVTP-FAMLSRSAAGIRGSTLIINMPG---NPNAVAECMEALL 436 (489)
Q Consensus 390 e~~~~~~~~~~p-~a~l~r~~~g~~~~~~v~~LPG---~P~a~~~~~~~il 436 (489)
..+-..+ .+. .+-..|+..|++|++ -|..++.+++.++
T Consensus 84 -----Aal~~d~~sA~----~ar~hNnaNVl~lG~rvig~ela~~iv~~fL 125 (149)
T 2vvr_A 84 -----AVVCSEPYSAQ----LSRQNNDTNVLAFGSRVVGLELAKMIVDAWL 125 (149)
T ss_dssp -----EEECSSHHHHH----HHHHHHCCCEEEEETTTBCHHHHHHHHHHHH
T ss_pred -----EEEeCCHHHHH----HHHHhCCCcEEEECccccCHHHHHHHHHHHH
Confidence 0000111 111 223357889999999 5555555555443
No 52
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=62.79 E-value=13 Score=34.32 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=34.9
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011276 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
++|+||-.| ++|...+...|++.|+++..+..- ++.+++. . . ++|.||.+||-+
T Consensus 25 ~~I~iiD~g-----------------~~~~~~i~~~l~~~G~~~~vv~~~-~~~~~l~----~--~-~~dglil~Gg~~ 78 (218)
T 2vpi_A 25 GAVVILDAG-----------------AQYGKVIDRRVRELFVQSEIFPLE-TPAFAIK----E--Q-GFRAIIISGGPN 78 (218)
T ss_dssp TCEEEEECS-----------------TTTTHHHHHHHHHTTCCEEEECTT-CCHHHHH----H--H-TCSEEEEEC---
T ss_pred CeEEEEECC-----------------CchHHHHHHHHHHCCCEEEEEECC-CChHHHh----h--c-CCCEEEECCCCc
Confidence 578888766 355578889999999988755332 2344333 2 2 499999999864
No 53
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=62.65 E-value=9.5 Score=33.61 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCeEEEEEeec---CCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011276 39 AMLLAAAMQQHCKLIDLGIVR---DDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~---Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
..|...|++.|++|.+++.-. .|.-.+...+.+++. .++|.-|+..|||.|
T Consensus 28 ~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG 82 (155)
T 1o1x_A 28 EKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGTGLG 82 (155)
T ss_dssp HHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHH
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHH
Confidence 356677888999999999743 345666666666654 358999999999976
No 54
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=62.39 E-value=5.9 Score=36.99 Aligned_cols=65 Identities=22% Similarity=0.116 Sum_probs=50.0
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011276 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
||-+.-..+.+++.|.++..+..-+|+ .++..+|+.+.+++++-|++.|++| |+.|++-..+.-+
T Consensus 53 DSi~~~~~~~~~~~~~~i~~~p~eKD~-TD~e~Al~~a~~~g~~~I~i~Ga~G-gR~DH~lani~ll 117 (222)
T 3lm8_A 53 DSITEQERRRIEKAAPALHVYQAEKDQ-TDLDLALDWALEKQPDIIQIFGITG-GRADHFLGNIQLL 117 (222)
T ss_dssp TTSCHHHHHHHHHHCTTCEEECCCSSS-CHHHHHHHHHHHHCCSEEEEESCCC-SCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHhcCCeEEEeCCCCCC-CHHHHHHHHHHHcCCCEEEEEcCCC-CchhHHHHHHHHH
Confidence 677777777888888887766555554 5577788887776799999999998 7999987766544
No 55
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=62.13 E-value=9 Score=33.53 Aligned_cols=51 Identities=18% Similarity=0.224 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCeEEEEEeec---CCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011276 39 AMLLAAAMQQHCKLIDLGIVR---DDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~---Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
-.|...|++.|++|.++|.-. .|.-.+...+.+++. .++|.-|+..|||.|
T Consensus 17 ~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG 71 (149)
T 2vvr_A 17 HEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVG 71 (149)
T ss_dssp HHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHH
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcHH
Confidence 348889999999999998733 346666666666654 358999999999976
No 56
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=61.42 E-value=29 Score=30.74 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=35.1
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHh
Q 011276 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKEL 380 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~ 380 (489)
+.|...+.+.|++. |+++..+.. .++.+++ .. ..+|.||.+||-++.......+.+.++
T Consensus 10 ~~~~~~~~~~l~~~-----G~~~~~~~~-~~~~~~~----~~----~~~dglil~Gg~~~~~~~~~~~~i~~~ 68 (189)
T 1wl8_A 10 GQYVHRIWRTLRYL-----GVETKIIPN-TTPLEEI----KA----MNPKGIIFSGGPSLENTGNCEKVLEHY 68 (189)
T ss_dssp CTTHHHHHHHHHHT-----TCEEEEEET-TCCHHHH----HH----TCCSEEEECCCSCTTCCTTHHHHHHTG
T ss_pred CchHHHHHHHHHHC-----CCeEEEEEC-CCChHHh----cc----cCCCEEEECCCCChhhhhhHHHHHHHH
Confidence 45667889999998 987664332 1222222 21 269999999997443323334555544
No 57
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=58.65 E-value=12 Score=33.42 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCeEEEEEeec---CCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011276 40 MLLAAAMQQHCKLIDLGIVR---DDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~---Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
.|...|++.|++|.+++.-. .|.-.+...+.+++. .++|.-|+..|||.|
T Consensus 37 ~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG 90 (169)
T 3ph3_A 37 EIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLG 90 (169)
T ss_dssp HHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHH
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHH
Confidence 56677889999999998754 345666666666654 358999999999976
No 58
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=58.45 E-value=29 Score=29.37 Aligned_cols=63 Identities=14% Similarity=0.063 Sum_probs=46.5
Q ss_pred ceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011276 289 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
++++-+-+++.+. .|....+++..|+.. |+++.+.+. .-..+++.+++.+. ++|+|..|.=.+
T Consensus 3 ~~~vvla~~~~d~-----HdiG~~~v~~~l~~~-----G~~Vi~lG~-~~p~e~~v~~a~~~----~~d~v~lS~~~~ 65 (137)
T 1ccw_A 3 KKTIVLGVIGSDC-----HAVGNKILDHAFTNA-----GFNVVNIGV-LSPQELFIKAAIET----KADAILVSSLYG 65 (137)
T ss_dssp CCEEEEEEETTCC-----CCHHHHHHHHHHHHT-----TCEEEEEEE-EECHHHHHHHHHHH----TCSEEEEEECSS
T ss_pred CCEEEEEeCCCch-----hHHHHHHHHHHHHHC-----CCEEEECCC-CCCHHHHHHHHHhc----CCCEEEEEecCc
Confidence 4677777777663 355556888899999 999999987 33456777777664 799999988554
No 59
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=58.18 E-value=6.4 Score=36.81 Aligned_cols=65 Identities=20% Similarity=0.087 Sum_probs=50.4
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011276 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
||-+.-..+.+++.|.++..+..-+|+ .++..+|+.+.+++++-|++.|++| |+.|++-..+.-+
T Consensus 52 DSi~~~~~~~~~~~~~~i~~~p~eKD~-TD~e~Al~~a~~~g~~~I~i~Ga~G-GR~DH~lani~lL 116 (223)
T 3k94_A 52 DSLPAEDVVKLQQAFPDLDVWPAEKDK-TDMEIALDWAVEQTARCIRLFGATG-GRLDHLFGNVELL 116 (223)
T ss_dssp GGSCHHHHHHHHHHCTTCCEECCBTTB-CHHHHHHHHHHTTCCSEEEEESCSS-SSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHhcCCeEEECCCcCCC-CHHHHHHHHHHHcCCCEEEEEcCCC-CchhHHHHHHHHH
Confidence 676677777888888777666555554 5677888888877899999999998 7999988777654
No 60
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=57.77 E-value=10 Score=35.29 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCeEEEEEeec------CCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011276 39 AMLLAAAMQQHCKLIDLGIVR------DDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~------Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
-.|...|++.|++|.++|.-. .|.-.+...+.+++. ..+|.-|+..|||.|
T Consensus 23 ~~i~~~L~~~G~eV~D~G~~s~~d~~s~DYPd~a~~vA~~V~~g~~d~GIliCGTGiG 80 (216)
T 2ppw_A 23 DSLKEATDKKGYQLFNYGMRGEEGESQLTYVQNGLMAAILLNTKAVDFVVTGCGTGVG 80 (216)
T ss_dssp HHHHHHHHHHTCEEEECSCCSCTTCCCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHH
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCCcHH
Confidence 367888999999999998752 356667777777654 358999999999976
No 61
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=57.76 E-value=13 Score=32.52 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCeEEEEEeec---CCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011276 40 MLLAAAMQQHCKLIDLGIVR---DDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~---Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
.|...|++.|++|.++|.-. .|.-.+...+.+++. .++|.-|...|||.|
T Consensus 17 ~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG 70 (149)
T 3he8_A 17 EIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLG 70 (149)
T ss_dssp HHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHH
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHH
Confidence 56677889999999998754 345566666666654 358999999999976
No 62
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=57.13 E-value=50 Score=31.42 Aligned_cols=65 Identities=15% Similarity=0.096 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCeEEEEEee---------cCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC
Q 011276 38 RAMLLAAAMQQHCKLIDLGIV---------RDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG 102 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v---------~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G 102 (489)
..++...+++.|+++...... ..+++.+.+.++++...++|.||....|.....++..++=+.+|
T Consensus 160 ~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvLg~CT~l~~~~~~~~le~~lg 233 (273)
T 2xed_A 160 AEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCAVQMPSLPLVETAEREFG 233 (273)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEEESSSSSCCTTHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEEcCCCCcchHHhHHHHHHHhC
Confidence 357788899999998765432 23567788888877555799999876777777665554434454
No 63
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=56.97 E-value=14 Score=36.84 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=40.6
Q ss_pred CcceEEEEEEeCCcccCCCccC-CchHH----HHHHHHccccccCC--cEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEE
Q 011276 287 YTEFSVAILTVSDTVASGAGPD-RSGPR----AVSVVNSSSEKLGG--AKVVATDVVPDDVGKIKEVLRRWSDIDKMDLI 359 (489)
Q Consensus 287 ~~~~~v~Ii~~GdEi~~G~~~D-~n~~~----l~~~l~~~~~~~~G--~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlV 359 (489)
.+..+|++|..|. +.| .--.. +.+..++. | +++.....++++. +..+.|+.+++ +++|+|
T Consensus 24 ~~~~kIglv~~g~------i~D~~f~~~~~~G~~~~~~~~-----G~~~~~~~~e~~~~~~-d~~~~l~~l~~-~g~d~I 90 (356)
T 3s99_A 24 EEKLKVGFIYIGP------PGDFGWTYQHDQARKELVEAL-----GDKVETTFLENVAEGA-DAERSIKRIAR-AGNKLI 90 (356)
T ss_dssp --CEEEEEECSSC------GGGSSHHHHHHHHHHHHHHHH-----TTTEEEEEECSCCTTH-HHHHHHHHHHH-TTCSEE
T ss_pred CCCCEEEEEEccC------CCchhHHHHHHHHHHHHHHHh-----CCceEEEEEecCCCHH-HHHHHHHHHHH-CCCCEE
Confidence 3568999998653 222 11111 22333444 7 8888777777764 45778888886 689999
Q ss_pred EEeC
Q 011276 360 LTLG 363 (489)
Q Consensus 360 IttG 363 (489)
|++|
T Consensus 91 i~~g 94 (356)
T 3s99_A 91 FTTS 94 (356)
T ss_dssp EECS
T ss_pred EECC
Confidence 9986
No 64
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=56.45 E-value=16 Score=31.54 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=49.0
Q ss_pred EEEeCCcccCCCccCCchHHHHHHHHccccc--cCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011276 294 ILTVSDTVASGAGPDRSGPRAVSVVNSSSEK--LGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~--~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
|+.+||.+..|.-...-...+++.|.+.... ..++++....+-.+....+.+.+.+.+...+.|+||...|+=
T Consensus 4 i~~~GDS~t~g~~~~~~~~~l~~~l~~~~~~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G~N 78 (195)
T 1yzf_A 4 IVLFGDSITAGYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLNKEVLIEKPDEVVIFFGAN 78 (195)
T ss_dssp EEEEESHHHHCBTTBSSCSHHHHHHHHHHHHTTBCCEEEEEEECTTCCHHHHHHHHHHHTGGGCCSEEEEECCTT
T ss_pred EEEEccccccCcCCCChHHHHHHHHHHhccccCCceEEEEeCCCCCCCHHHHHHHHHHhhhhcCCCEEEEEeecc
Confidence 6778999987743223334555555543110 003688889999999888888888765445899999988763
No 65
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=56.17 E-value=17 Score=38.94 Aligned_cols=77 Identities=13% Similarity=0.241 Sum_probs=54.5
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
++++|.+.+.+.|+- |--.-++..+|+..|++|+++|.-- .++.|.+++++. ++|+|..|+-.
T Consensus 97 ~~~kVLlatv~GD~H-------------diG~~iva~~L~~~G~eVi~LG~~v-P~e~iv~aa~~~---~~diVgLS~l~ 159 (579)
T 3bul_A 97 TNGKMVIATVKGDVH-------------DIGKNIVGVVLQCNNYEIVDLGVMV-PAEKILRTAKEV---NADLIGLSGLI 159 (579)
T ss_dssp CSCEEEEEEBTTCCC-------------CHHHHHHHHHHHTTTCEEEECCSSB-CHHHHHHHHHHH---TCSEEEEECCS
T ss_pred CCCeEEEEECCCCCc-------------hHHHHHHHHHHHHCCCEEEECCCCC-CHHHHHHHHHHc---CCCEEEEEecC
Confidence 367777777666654 4555788999999999999998742 367777776654 59999999955
Q ss_pred cCCCCCchHHHHHhc
Q 011276 87 SMGDKDFVKPLLQKK 101 (489)
Q Consensus 87 s~G~~D~~~~~l~~~ 101 (489)
. ...+.+++.++++
T Consensus 160 t-~~~~~m~~~i~~L 173 (579)
T 3bul_A 160 T-PSLDEMVNVAKEM 173 (579)
T ss_dssp T-HHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHH
Confidence 3 3445566665544
No 66
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=56.13 E-value=21 Score=31.09 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=50.4
Q ss_pred EEEEeCCcccCCCccCCchHHHHHHHHccccccCC--cEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCC
Q 011276 293 AILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGG--AKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPR 370 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G--~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~ 370 (489)
-|+.+||.+..|.-......|. ..|.+. + + +.+....+-.+....+...+...+...+.|+||...|+=-...
T Consensus 3 ~i~~~GDSit~g~~~~~~~~~~-~~l~~~---l-~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~Vii~~G~ND~~~ 77 (190)
T 1ivn_A 3 TLLILGDSLSAGYRMSASAAWP-ALLNDK---W-QSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLR 77 (190)
T ss_dssp EEEEEECHHHHCSSSCGGGSHH-HHHHHH---C--CCEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECCTTTTSS
T ss_pred cEEEEecCcccCCCCCCCcCHH-HHHHHH---h-ccCcEEEecCCCCchHHHHHHHHHHHHHhcCCCEEEEEeecccccc
Confidence 3778899998775433222222 223222 1 3 6788888888888777777776654347899999887654333
Q ss_pred CChHHHHHHh
Q 011276 371 DVTPEATKEL 380 (489)
Q Consensus 371 D~T~eav~~~ 380 (489)
..+.+.+.+.
T Consensus 78 ~~~~~~~~~~ 87 (190)
T 1ivn_A 78 GFQPQQTEQT 87 (190)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 3444444443
No 67
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=55.06 E-value=21 Score=32.03 Aligned_cols=47 Identities=15% Similarity=-0.017 Sum_probs=30.5
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011276 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
++....+..+|++.|+++..+..-..+.++ +... ++|.||.+||.+.
T Consensus 11 ~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~----~~~~---~~dglil~gG~~~ 57 (195)
T 1qdl_B 11 DSFVYNIAQIVGELGSYPIVIRNDEISIKG----IERI---DPDRLIISPGPGT 57 (195)
T ss_dssp CSSHHHHHHHHHHTTCEEEEEETTTSCHHH----HHHH---CCSEEEECCCSSC
T ss_pred CchHHHHHHHHHhCCCEEEEEeCCCCCHHH----HhhC---CCCEEEECCCCCC
Confidence 566788999999999988754321112222 2221 4899999998653
No 68
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=54.88 E-value=16 Score=40.23 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=53.0
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
++|||.+-..|.+. .|.-.-++..+|+..|++|++.+.- -.++++.++..+ .++|+|..|+=.
T Consensus 603 ~r~kVvlatvg~D~-------------HdiG~~iVa~~l~~~GfeVi~lG~~-v~~eeiv~aA~e---~~adiVglSsl~ 665 (762)
T 2xij_A 603 RRPRLLVAKMGQDG-------------HDRGAKVIATGFADLGFDVDIGPLF-QTPREVAQQAVD---ADVHAVGVSTLA 665 (762)
T ss_dssp SCCEEEEECCSSCC-------------CCHHHHHHHHHHHHTTCEEEECCTT-CCHHHHHHHHHH---TTCSEEEEEECS
T ss_pred CCCEEEEEecCcch-------------hhHHHHHHHHHHHhCCeEEeeCCCC-CCHHHHHHHHHH---cCCCEEEEeeec
Confidence 68898888877654 3556678899999999999987653 235666555544 369999998643
Q ss_pred cCCCCCchHHHHHhc
Q 011276 87 SMGDKDFVKPLLQKK 101 (489)
Q Consensus 87 s~G~~D~~~~~l~~~ 101 (489)
+ +..+.++++++.+
T Consensus 666 ~-~~~~~~~~vi~~L 679 (762)
T 2xij_A 666 A-GHKTLVPELIKEL 679 (762)
T ss_dssp S-CHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHH
Confidence 2 3445566665543
No 69
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=54.56 E-value=4.2 Score=35.63 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCeEEEEEeecC----CHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Q 011276 40 MLLAAAMQQHCKLIDLGIVRD----DEEELEKTLDNAFSAGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~D----d~~~i~~~l~~~~~~~~DlvittGG~s~G 89 (489)
.|...|++.|++|.+++.-.+ |.-.+...+.+++. ++|.-|...|||.|
T Consensus 24 ~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~-~~d~GIliCGTGiG 76 (148)
T 4em8_A 24 FLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVS-DTSFGVLICGTGIG 76 (148)
T ss_dssp HHHHHHHHTTCEEEECCCCTTCSCCCGGGGTHHHHTTCB-TTBEEEEEESSSHH
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHH-HhCeEEEEccCcHH
Confidence 456678899999999987533 35566777777766 69999999999976
No 70
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=54.33 E-value=14 Score=34.23 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCeEEEEEe--e---cCCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011276 40 MLLAAAMQQHCKLIDLGI--V---RDDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~--v---~Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
.|...|++.|++|.++|. - +.|.-.+...+.+++. ..+|.-|+..|||.|
T Consensus 24 ~l~~~L~~~G~eV~D~G~~~~~~~~~dYpd~a~~vA~~V~~g~~d~GIliCGTGiG 79 (214)
T 3ono_A 24 ELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILLNSKAVDFVVTGCGTGQG 79 (214)
T ss_dssp HHHHHHHHTTCEEEECSCSSTTSSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHH
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHH
Confidence 567788999999999995 2 2245566666666654 358999999999976
No 71
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=53.95 E-value=11 Score=36.20 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=50.5
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHH--------HHhC-CCeEEEEEeecCCHHHHHHHHHHHHhcCC
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAA--------AMQQ-HCKLIDLGIVRDDEEELEKTLDNAFSAGI 77 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~--------l~~~-G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~ 77 (489)
+++||.+-+.+.|.- |----++..+ |+.+ |++|+++|.- =.++.|.++..+. ++
T Consensus 119 ~~~~Vvlatv~gD~H-------------diG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~-vp~e~iv~aa~e~---~~ 181 (262)
T 1xrs_B 119 RKIVVVGASTGTDAH-------------TVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQ-VANEDFIKKAVEL---EA 181 (262)
T ss_dssp SCEEEEEEEBTTCCC-------------CHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSS-BCHHHHHHHHHHT---TC
T ss_pred CCCEEEEEeCCCCCc-------------hHHHHHHhhhhcccchHHHHhcCCcEEEECCCC-CCHHHHHHHHHHc---CC
Confidence 466776666666654 4444667777 9999 9999999972 2256666665543 69
Q ss_pred CEEEEeCCCcCC--CCCchHHHHHh
Q 011276 78 DILLTSGGVSMG--DKDFVKPLLQK 100 (489)
Q Consensus 78 DlvittGG~s~G--~~D~~~~~l~~ 100 (489)
|+|..|.-...+ ..+.+++.++.
T Consensus 182 d~VglS~l~t~~~~~~~~~~~~i~~ 206 (262)
T 1xrs_B 182 DVLLVSQTVTQKNVHIQNMTHLIEL 206 (262)
T ss_dssp SEEEEECCCCTTSHHHHHHHHHHHH
T ss_pred CEEEEEeecCCccchHHHHHHHHHH
Confidence 999999876543 23344444443
No 72
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=53.84 E-value=16 Score=34.51 Aligned_cols=38 Identities=29% Similarity=0.178 Sum_probs=24.7
Q ss_pred HHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011276 43 AAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 43 a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
..+++.|+.++.+....| .+ +. +.++ .+|-||.+||-+
T Consensus 35 ~~l~~aG~~pv~lp~~~~-~~-~~----~~l~-~~DGlil~GG~~ 72 (254)
T 3fij_A 35 DAIQKVGGFPIALPIDDP-ST-AV----QAIS-LVDGLLLTGGQD 72 (254)
T ss_dssp HHHHHHTCEEEEECCCCG-GG-HH----HHHH-TCSEEEECCCSC
T ss_pred HHHHHCCCEEEEEeCCCc-hH-HH----HHHh-hCCEEEECCCCC
Confidence 345678999886654433 22 33 3344 499999999965
No 73
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=53.54 E-value=13 Score=34.74 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=37.5
Q ss_pred HHHHHHHhCCCeEEEEEeec------CCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011276 40 MLLAAAMQQHCKLIDLGIVR------DDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~------Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
.|...|++.|++|.++|.-. .|.-.+...+.+++. ..+|.-|+..|||.|
T Consensus 40 ~i~~~L~~~G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~g~~d~GIliCGTGiG 96 (231)
T 3c5y_A 40 ALTTVAEPLGHKVFNYGMYTAEDKASLTYVMNGLLAGILLNSGAADFVVTGCGTGMG 96 (231)
T ss_dssp HHHHHHGGGTCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHHTSCSEEEEEESSSHH
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCCcHH
Confidence 46667889999999998752 245666666666543 358999999999976
No 74
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=52.93 E-value=11 Score=34.91 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=49.9
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhc-CCCEEEEeCCCcCCCCCchHHHHHhc
Q 011276 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSA-GIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~-~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
.||-++-..+.+++.|.++..+..-+|+ .++..+|+.+.++ +++-|++.|++| |+.|++-..+.-+
T Consensus 46 fDSi~~~~~~~~~~~~~~i~~~~~eKD~-TD~e~Al~~a~~~~~~~~I~i~Ga~G-GR~DH~lani~lL 112 (218)
T 3ihk_A 46 FDSVSAEEFKQIKAKAKKLVMAPAEKND-TDTELALKTIFDCFGRVEIIVFGAFG-GRIDHMLSNIFLP 112 (218)
T ss_dssp CTTSCHHHHHHHHTTCSSEEECCSSCSS-CHHHHHHHHHHHHTSSCEEEEESCSS-SCHHHHHHHHTGG
T ss_pred cccCCHHHHHHHHhcCCeEEECCCCCCC-CHHHHHHHHHHHhCCCCEEEEECCCC-CchhhHHHHHHHH
Confidence 4777777778888888887766555554 5577778877764 578899999998 7999987777544
No 75
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=52.86 E-value=16 Score=40.03 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=53.1
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
++|||.+-..|.+.- |.-.-++..+|+..|++|++.+.-. .++++.++..+ .++|+|..|+=.
T Consensus 595 ~r~kVvlatvg~D~H-------------diG~~iVa~~l~~~GfeVi~lG~~v-~~eeiv~aA~e---~~adiVglSsl~ 657 (727)
T 1req_A 595 RRPRILLAKMGQDGH-------------DRGQKVIATAYADLGFDVDVGPLFQ-TPEETARQAVE---ADVHVVGVSSLA 657 (727)
T ss_dssp SCCEEEEECBTTCCC-------------CHHHHHHHHHHHHHTCEEEECCTTB-CHHHHHHHHHH---TTCSEEEEEECS
T ss_pred CCCEEEEEeCCcchh-------------HHHHHHHHHHHHhCCeEEEeCCCCC-CHHHHHHHHHH---cCCCEEEEeeec
Confidence 689998888876543 5566788999999999998876532 35665555544 369999998843
Q ss_pred cCCCCCchHHHHHhc
Q 011276 87 SMGDKDFVKPLLQKK 101 (489)
Q Consensus 87 s~G~~D~~~~~l~~~ 101 (489)
. +..+.++++++.+
T Consensus 658 ~-~~~~~~~~vi~~L 671 (727)
T 1req_A 658 G-GHLTLVPALRKEL 671 (727)
T ss_dssp S-CHHHHHHHHHHHH
T ss_pred H-hHHHHHHHHHHHH
Confidence 2 3344556665543
No 76
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=52.47 E-value=21 Score=31.90 Aligned_cols=60 Identities=17% Similarity=0.066 Sum_probs=32.0
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc-CCCCCchHHHH
Q 011276 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS-MGDKDFVKPLL 98 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s-~G~~D~~~~~l 98 (489)
||-.+.+..+|++.|+++..+..- .+.+.+.+++... +.|-+|.+||.+ +.+.++..+.+
T Consensus 10 ~s~~~~i~~~l~~~G~~~~v~~~~-~~~~~i~~~l~~~---~~~~iil~gGpg~~~~~~~~~~l~ 70 (192)
T 1i1q_B 10 DSFTWNLADQLRTNGHNVVIYRNH-IPAQTLIDRLATM---KNPVLMLSPGPGVPSEAGCMPELL 70 (192)
T ss_dssp CSSHHHHHHHHHHTTCEEEEEETT-SCSHHHHHHHTTC---SSEEEEECCCSSCGGGSTTHHHHH
T ss_pred ccHHHHHHHHHHHCCCeEEEEECC-CCHHHHHHHhhhc---cCCeEEECCCCcCchhCchHHHHH
Confidence 456788999999999987643221 1234444433221 123355566554 34444444333
No 77
>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha}
Probab=52.39 E-value=7.7 Score=38.61 Aligned_cols=115 Identities=13% Similarity=0.129 Sum_probs=62.7
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCC-HHHHHHHHHHHHh--cCCCEEEEeCCCcCCCC------------CchHHHH
Q 011276 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDD-EEELEKTLDNAFS--AGIDILLTSGGVSMGDK------------DFVKPLL 98 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd-~~~i~~~l~~~~~--~~~DlvittGG~s~G~~------------D~~~~~l 98 (489)
.|+..+.+..++.+ .+++.+...+-+. -++..+.|+++++ +++||+|.+|++..... +.++++.
T Consensus 25 L~~~~P~l~~ll~~-~I~L~yhptlm~~~G~~a~~~l~~~~~~~~~~dILlVEGsV~~~~~g~y~~~gg~~~~e~l~e~~ 103 (339)
T 3rgw_S 25 IRSAHPLAKDVVLS-MISLDYDDTLMAAAGHQAEAILEEIMTKYKGNYILAVEGNPPLNQDGMSCIIGGRPFIEQLKYVA 103 (339)
T ss_dssp TTCBTTBHHHHHHH-TEEEEEETTTCSCCHHHHHHHHHHHHHHTTTCSEEEEESBCBCSGGGTTBEETTEEHHHHHHHHH
T ss_pred HcCCCCCHHHHHhC-CeeEEecchhhhhhhHHHHHHHHHHHhccCCCcEEEEeeeccCCCCcceeccCChHHHHHHHHHc
Confidence 45666777776655 4677777666554 2444455555543 36899999999987652 2233333
Q ss_pred HhcCCeEE--------eeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHH
Q 011276 99 QKKGTIYF--------NKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIV 156 (489)
Q Consensus 99 ~~~G~~~f--------~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~ 156 (489)
.+- +.++ -||.-.-..+....-++. -..+++++.+||.|..-...+..++.
T Consensus 104 ~~~-k~VIAvGtCA~~GGi~a~~~n~~~~~gv~~------~i~~~vdi~IPGCPP~Pe~i~~~l~~ 162 (339)
T 3rgw_S 104 KDA-KAIISWGSCASWGCVQAAKPNPTQATPVHK------VITDKPIIKVPGCPPIAEVMTGVITY 162 (339)
T ss_dssp TTC-SEEEEEHHHHHTCTGGGSTTCTTCBCCGGG------TCCSSCEEEECSSSCCHHHHHHHHHH
T ss_pred cCC-CEEEEeccccccCCcCCCCCCccccCCHHH------hCCCCCEEEeCCCCCCHHHHHHHHHH
Confidence 321 2221 233221111211111110 01135789999999988877666643
No 78
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=51.94 E-value=74 Score=28.24 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=30.8
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCC
Q 011276 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPR 370 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~ 370 (489)
++....+.++|++. |+++..+..-..+.++ +... ++|.||.+||-|...+
T Consensus 11 ~s~~~~~~~~l~~~-----G~~~~v~~~~~~~~~~----~~~~----~~dglil~gG~~~~~~ 60 (195)
T 1qdl_B 11 DSFVYNIAQIVGEL-----GSYPIVIRNDEISIKG----IERI----DPDRLIISPGPGTPEK 60 (195)
T ss_dssp CSSHHHHHHHHHHT-----TCEEEEEETTTSCHHH----HHHH----CCSEEEECCCSSCTTS
T ss_pred CchHHHHHHHHHhC-----CCEEEEEeCCCCCHHH----HhhC----CCCEEEECCCCCChhh
Confidence 44456788999998 9877654421112222 2221 5899999999765443
No 79
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=51.88 E-value=17 Score=32.39 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=36.1
Q ss_pred cChHHH----HHHHHHhCCCeEEEEEeecC---CHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011276 35 DSNRAM----LLAAAMQQHCKLIDLGIVRD---DEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 35 dsn~~~----l~a~l~~~G~~~~~~~~v~D---d~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
|-.++- |...|++.|++|.++|.-.+ |.-.+...+.+++. .++|.-|...|||.|
T Consensus 29 DhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGTGiG 91 (166)
T 3s5p_A 29 DHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGTGIG 91 (166)
T ss_dssp CGGGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESSSHH
T ss_pred CchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCcHH
Confidence 555554 45567889999999997542 23345555555543 358999999999976
No 80
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=51.64 E-value=39 Score=32.39 Aligned_cols=113 Identities=12% Similarity=0.084 Sum_probs=62.2
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHH---------HHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC-CeEE
Q 011276 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELE---------KTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYF 106 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~---------~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G-~~~f 106 (489)
-+..+...++.+|+++..+..-++..+.+. ..+.+.+. ++|+|+++=.... +..+.++.+. .-++
T Consensus 168 iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~-~aDvVi~~~p~~~----i~~~~~~~mk~g~~l 242 (300)
T 2rir_A 168 TGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVK-DIDICINTIPSMI----LNQTVLSSMTPKTLI 242 (300)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHST-TCSEEEECCSSCC----BCHHHHTTSCTTCEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhh-CCCEEEECCChhh----hCHHHHHhCCCCCEE
Confidence 456677778888988776665443222221 23555665 5999998765422 2244555554 3444
Q ss_pred eeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHH-----HHHHHHHHHHHHHHhc
Q 011276 107 NKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSC-----IVCFHLYIVPAIRHLS 163 (489)
Q Consensus 107 ~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa-----~~~~~~~v~P~L~~l~ 163 (489)
=.++..|+.-- +.... ..+..++..||-|... ...+...+.|+|..+.
T Consensus 243 in~a~g~~~~~-~~~a~--------~~G~~~i~~pg~~g~v~~a~a~~l~~~~~~~~l~~~~ 295 (300)
T 2rir_A 243 LDLASRPGGTD-FKYAE--------KQGIKALLAPGLPGIVAPKTAGQILANVLSKLLAEIQ 295 (300)
T ss_dssp EECSSTTCSBC-HHHHH--------HHTCEEEECCCHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCcC-HHHHH--------HCCCEEEECCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 44554454421 11111 1235677777766544 4445566677776654
No 81
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=51.50 E-value=14 Score=32.52 Aligned_cols=110 Identities=18% Similarity=0.162 Sum_probs=64.3
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcC---CCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccc
Q 011276 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVP---DDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERE 384 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~---Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~ 384 (489)
|..|..+.+.|.+.+... |++|..++.-. .|...+...+.+++....+|.-|+..|||.+- +=+.+|
T Consensus 20 DhaG~~lK~~i~~~L~~~-G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~--------siaANK- 89 (155)
T 1o1x_A 20 DHAAFELKEKVKNYLLGK-GIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGTGLGM--------SIAANR- 89 (155)
T ss_dssp CSTTHHHHHHHHHHHHHT-TCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHH--------HHHHTT-
T ss_pred CchHHHHHHHHHHHHHHC-CCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHH--------HHHhhc-
Confidence 444454444444433333 99999998633 46788888888887767899999999999652 222222
Q ss_pred cccHHHHHHhcccccCC-CccccccceeEECCEEEEEcCC---CHHHHHHHHHHHH
Q 011276 385 TPGLLYVMMQESLKVTP-FAMLSRSAAGIRGSTLIINMPG---NPNAVAECMEALL 436 (489)
Q Consensus 385 l~g~~e~~~~~~~~~~p-~a~l~r~~~g~~~~~~v~~LPG---~P~a~~~~~~~il 436 (489)
.||+. ..+-..+ .+. .+-..|+..|++|++ -|..++.+++.++
T Consensus 90 v~GIR-----AAl~~d~~sA~----~ar~hNnANVL~lG~rvig~elA~~Iv~~fL 136 (155)
T 1o1x_A 90 YRGIR-----AALCLFPDMAR----LARSHNNANILVLPGRLIGAELAFWIVDTFL 136 (155)
T ss_dssp STTCC-----EEECSSHHHHH----HHHHTTCCSEEEEETTTSCHHHHHHHHHHHH
T ss_pred CCCeE-----EEEeCCHHHHH----HHHHcCCCcEEEECCcccCHHHHHHHHHHHH
Confidence 22221 0000011 111 223358899999999 5555555555554
No 82
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=51.21 E-value=27 Score=31.51 Aligned_cols=107 Identities=11% Similarity=0.084 Sum_probs=63.5
Q ss_pred CCchHHHHHHHHccccccCC--cEEEEEEEc----CCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhh
Q 011276 308 DRSGPRAVSVVNSSSEKLGG--AKVVATDVV----PDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELI 381 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G--~~v~~~~~v----~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~ 381 (489)
|..+..+.+.|.+.+... | ++|..++.- ++|..++...+.+++...++|.-|...|+|.+- +=+.
T Consensus 37 DHaG~~LK~~i~~~L~~~-G~g~eV~D~G~~s~~e~~DYPd~a~~vA~~V~~ge~d~GIliCGTGiG~--------sIaA 107 (184)
T 3sgw_A 37 DDAGVSYKEALKAHLSDN-PLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDGKVDRALMICGTGLGV--------AISA 107 (184)
T ss_dssp CGGGHHHHHHHHHHHTTC-TTEEEEEECSCCSTTCCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHH--------HHHH
T ss_pred CchhHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCcHHH--------hhhh
Confidence 455555555555544444 7 799998765 247888888888888767899999999999652 2222
Q ss_pred ccccccHHHHHHhcccccCC-CccccccceeEECCEEEEEcCCCHHHHHHHHH
Q 011276 382 ERETPGLLYVMMQESLKVTP-FAMLSRSAAGIRGSTLIINMPGNPNAVAECME 433 (489)
Q Consensus 382 ~~~l~g~~e~~~~~~~~~~p-~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~ 433 (489)
+| +||++- .+-..+ .+. .+-..|+..|++|++--.....+.+
T Consensus 108 NK-v~GIRA-----Alc~d~~sA~----laR~HNnANVL~lG~Rvig~elA~~ 150 (184)
T 3sgw_A 108 NK-VPGIRA-----VTAHDTFSVE----RAILSNDAQVLCFGQRVIGIELAKR 150 (184)
T ss_dssp HT-STTCCE-----EECCSHHHHH----HHHHTTCCSEEEEETTTSCHHHHHH
T ss_pred hc-CCCeEE-----EEeCCHHHHH----HHHHhCCCcEEEEchhhcCHHHHHH
Confidence 22 222210 000011 111 2233588999999997555444444
No 83
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=51.10 E-value=99 Score=28.69 Aligned_cols=77 Identities=14% Similarity=0.033 Sum_probs=54.3
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEee--cC-------CHHHHHHHHHH-H-HhcCC
Q 011276 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIV--RD-------DEEELEKTLDN-A-FSAGI 77 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v--~D-------d~~~i~~~l~~-~-~~~~~ 77 (489)
-||+|++|-. +.-...+...+++.|+++...... .| +++.+.+.+++ + ...++
T Consensus 118 ~rvglltpy~----------------~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a 181 (240)
T 3ixl_A 118 RRVALATAYI----------------DDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDS 181 (240)
T ss_dssp SEEEEEESSC----------------HHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTC
T ss_pred CEEEEEeCCh----------------HHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCC
Confidence 4899988721 222356688899999998876542 23 57788888888 4 34579
Q ss_pred CEEEEeCCCcCCCCCchHHHHHhcC
Q 011276 78 DILLTSGGVSMGDKDFVKPLLQKKG 102 (489)
Q Consensus 78 DlvittGG~s~G~~D~~~~~l~~~G 102 (489)
|.||.. .|...-.+.+.+.-+++|
T Consensus 182 daivL~-CT~l~~l~~i~~le~~lg 205 (240)
T 3ixl_A 182 DGILLS-SGGLLTLDAIPEVERRLG 205 (240)
T ss_dssp SEEEEE-CTTSCCTTHHHHHHHHHS
T ss_pred CEEEEe-CCCCchhhhHHHHHHHhC
Confidence 999987 688888886666555666
No 84
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=50.61 E-value=23 Score=31.06 Aligned_cols=72 Identities=10% Similarity=0.053 Sum_probs=49.9
Q ss_pred EEEEeCCcccCCCcc------------CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEE
Q 011276 293 AILTVSDTVASGAGP------------DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLIL 360 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~------------D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVI 360 (489)
-|+.+||.+..|.-. ..-...+++.|....... ++.+....+-.+....+...+...+...+.|+|+
T Consensus 10 ~i~~~GDSit~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~n~g~~G~~~~~~~~~~~~~~~~~~pd~vv 88 (216)
T 3rjt_A 10 KLVMVGDSITDCGRAHPVGEAPRGGLGNGYVALVDAHLQVLHPDW-RIRVVNVGTSGNTVADVARRWEDDVMALQPDYVS 88 (216)
T ss_dssp EEEEEESHHHHTTCCSSCEESSTTTTCSSHHHHHHHHHHHHCGGG-CCEEEECCCTTCCHHHHHHHHHHHTGGGCCSEEE
T ss_pred EEEEEeccccccCCCcccccccccccCccHHHHHHHHHHhhCCCC-CeEEEECCCCCccHHHHHHHHHhHHhhcCCCEEE
Confidence 578899999866432 223445566666431111 5788999999999988888876654445799999
Q ss_pred EeCCC
Q 011276 361 TLGGT 365 (489)
Q Consensus 361 ttGG~ 365 (489)
...|+
T Consensus 89 i~~G~ 93 (216)
T 3rjt_A 89 LMIGV 93 (216)
T ss_dssp EECCH
T ss_pred EEeec
Confidence 98875
No 85
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=49.80 E-value=18 Score=31.20 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=48.8
Q ss_pred EEEEeCCcccCCCccC---CchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCC
Q 011276 293 AILTVSDTVASGAGPD---RSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGT 365 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~D---~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~ 365 (489)
-|+.+||.+..|.-.+ .-...+++.|.+. .. ++++....+-.+....+.+.+...+...++|+||...|+
T Consensus 4 ~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~--~~-~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ 76 (185)
T 3hp4_A 4 TILILGDXLSAAYGLQQEEGWVKLLQDKYDAE--QS-DIVLINASISGETSGGALRRLDALLEQYEPTHVLIELGA 76 (185)
T ss_dssp EEEEEECTTTTTTTSCGGGSHHHHHHHHHHHT--TC-CEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECCH
T ss_pred eEEEECCcccccCCCCCcccHHHHHHHHHHhc--CC-cEEEEECCcCCccHHHHHHHHHHHHhhcCCCEEEEEeec
Confidence 4788999998875333 2234555666644 11 456777788899888888888777653478999999885
No 86
>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_B 3ayz_B
Probab=49.15 E-value=7.1 Score=37.93 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=61.8
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecC-CHHHHHHHHHHHHh--cCCCEEEEeCCCcCCCC------------CchHHHH
Q 011276 34 RDSNRAMLLAAAMQQHCKLIDLGIVRD-DEEELEKTLDNAFS--AGIDILLTSGGVSMGDK------------DFVKPLL 98 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~D-d~~~i~~~l~~~~~--~~~DlvittGG~s~G~~------------D~~~~~l 98 (489)
.|++.+.+..+|.+. +.+.....+-+ .-++..+.++++++ .++|++|.+|.+..... +.+.++.
T Consensus 31 L~~~~P~~~d~l~~~-i~l~~~~tl~~a~g~~a~~~l~~~~~~~~~~dilvVeG~V~~~~~g~~~~~~g~~~l~~~~~~~ 109 (283)
T 3ayx_B 31 IRSAHPLAKDVVLSM-ISLDYDDTLMAASGHAAEAILDEIKEKYKGNYILAVEGNPPLNQDGMSCIIGGRPFSEQLKRMA 109 (283)
T ss_dssp HTCSSSCHHHHHHHT-EEEEEETTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBCBCSGGGTTBEETTEEHHHHHHHHH
T ss_pred HhcCCCcHHHHHhhc-eeEEEecchhhhcchhHHHHHHHHhccCCCCeEEEEeCCCccCCCcceeeeCCcHHHHHHHHHc
Confidence 456566676655554 44555444333 23455556666553 35899999999988764 3333333
Q ss_pred HhcCCeE-------EeeeeecCCCceeeEEEccCCCCccc-cccEEEEEcCCChHHHHHHHHHHHH
Q 011276 99 QKKGTIY-------FNKVCMKPGKPLTFAEINIKPTDDVM-VNKILAFGLPGNPVSCIVCFHLYIV 156 (489)
Q Consensus 99 ~~~G~~~-------f~~v~~kPGkp~~~a~~~~~~~~~~~-~~~~~v~~LPGnP~aa~~~~~~~v~ 156 (489)
.+-.-++ +-||.-.-+.|....-++.- .+ .-.++|+.+||.|..-...+..++.
T Consensus 110 ~~ak~VIA~GsCA~~GGi~a~~pn~~~~~gv~~~----i~~~vd~pvi~IPGCPP~Pe~i~~~l~~ 171 (283)
T 3ayx_B 110 DDAKAIISWGSCASWGCVQAAKPNPTQATPVHKF----LGGGYDKPIIKVPGCPPIAEVMTGVITY 171 (283)
T ss_dssp HTEEEEEEEHHHHHTCTGGGSTTCTTCBCCHHHH----HCTTCCSCEEEECSSSCCHHHHHHHHHH
T ss_pred ccCCEEEEeeeccccCCCCCCCCCCccCcChhHh----ccccCCCceEEeeCCCCCHHHHHHHHHH
Confidence 3321122 12333221122221111100 00 0136789999999998877766643
No 87
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=48.97 E-value=19 Score=35.93 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=32.4
Q ss_pred HHHHHHhCC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011276 41 LLAAAMQQH--CKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 41 l~a~l~~~G--~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
+..+.+++| +++.....++++. +..+.|++++++++|+||++|
T Consensus 50 ~~~~~~~~G~~~~~~~~e~~~~~~-d~~~~l~~l~~~g~d~Ii~~g 94 (356)
T 3s99_A 50 RKELVEALGDKVETTFLENVAEGA-DAERSIKRIARAGNKLIFTTS 94 (356)
T ss_dssp HHHHHHHHTTTEEEEEECSCCTTH-HHHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHhCCceEEEEEecCCCHH-HHHHHHHHHHHCCCCEEEECC
Confidence 445667888 8877766666654 457888888887899999986
No 88
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=48.74 E-value=8.4 Score=35.63 Aligned_cols=65 Identities=22% Similarity=0.146 Sum_probs=47.1
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011276 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
.||-+.-....+++.| ++..+..-+| ..++..+|+.+++++++-|++.|++| |+.|++-..+.-+
T Consensus 49 ~DSi~~~~~~~~~~~~-~i~~~p~eKD-~TD~e~Al~~a~~~~~~~I~i~Ga~G-gR~DH~lani~ll 113 (212)
T 3l8m_A 49 FDSISDSERNFIQQQI-EINPYNSEKD-DTDLALGIDQAVKRGYRNIDVYGATG-GRLDHFMGALQIL 113 (212)
T ss_dssp CCCSCHHHHHHHHHHT-BCCCCC---C-BCHHHHHHHHHHHTTCCEEEEESCSS-SCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHhcCC-cEEEECCcCC-CCHHHHHHHHHHHCCCCEEEEEcCCC-CchhHHHHHHHHH
Confidence 3676677777777777 6554444444 45677888888777899999999998 7999988877655
No 89
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=47.27 E-value=44 Score=29.70 Aligned_cols=70 Identities=14% Similarity=0.284 Sum_probs=46.2
Q ss_pred EEEEEEeCCcccCCCccC---CchHHHHHHHHccccccCCcEEE----------------EEEEcCCCHHHHHHHHHHhh
Q 011276 291 SVAILTVSDTVASGAGPD---RSGPRAVSVVNSSSEKLGGAKVV----------------ATDVVPDDVGKIKEVLRRWS 351 (489)
Q Consensus 291 ~v~Ii~~GdEi~~G~~~D---~n~~~l~~~l~~~~~~~~G~~v~----------------~~~~v~Dd~~~I~~~l~~~~ 351 (489)
..-|+.+||.+..|.-.+ .-...+++.|... |..+. ..++-.+....+.+.+...+
T Consensus 5 ~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~-----~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l 79 (215)
T 2vpt_A 5 TIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQA-----GLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWL 79 (215)
T ss_dssp EEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHT-----TCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHH
T ss_pred ceEEEecccccccCCCCCCCCchHHHHHHHHHHc-----CCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHh
Confidence 346889999998765432 2234566677665 54433 45666777777777776654
Q ss_pred hcCCCcEEEEeCCC
Q 011276 352 DIDKMDLILTLGGT 365 (489)
Q Consensus 352 ~~~~~DlVIttGG~ 365 (489)
...+.|+|+...|+
T Consensus 80 ~~~~pd~vvi~~G~ 93 (215)
T 2vpt_A 80 NTHNPDVVFLWIGG 93 (215)
T ss_dssp HHHCCSEEEEECCH
T ss_pred hccCCCEEEEEccc
Confidence 32478999998875
No 90
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=46.98 E-value=69 Score=28.50 Aligned_cols=84 Identities=10% Similarity=0.148 Sum_probs=55.9
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHH---HHHHHhCCCeEEEEEee--cCCHHHHHHHHHHHHhcCCCEEE
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAML---LAAAMQQHCKLIDLGIV--RDDEEELEKTLDNAFSAGIDILL 81 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l---~a~l~~~G~~~~~~~~v--~Dd~~~i~~~l~~~~~~~~Dlvi 81 (489)
-+|+|+||.-|+ |.-+.. ...|+++|+. .+.+++ --.++.+.+..+++-++++++||
T Consensus 10 ~~~~V~IimGS~-----------------SD~~v~~~a~~~L~~~Gi~-~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViI 71 (170)
T 1xmp_A 10 MKSLVGVIMGST-----------------SDWETMKYACDILDELNIP-YEKKVVSAHRTPDYMFEYAETARERGLKVII 71 (170)
T ss_dssp -CCSEEEEESSG-----------------GGHHHHHHHHHHHHHTTCC-EEEEECCTTTSHHHHHHHHHHTTTTTCCEEE
T ss_pred CCCcEEEEECcH-----------------HHHHHHHHHHHHHHHcCCC-EEEEEEeccCCHHHHHHHHHHHHhCCCcEEE
Confidence 478999998652 443444 4458899987 455555 35678888888877656789988
Q ss_pred EeCCCcCCCCCchHHHHHhcCCeEEeeeeec
Q 011276 82 TSGGVSMGDKDFVKPLLQKKGTIYFNKVCMK 112 (489)
Q Consensus 82 ttGG~s~G~~D~~~~~l~~~G~~~f~~v~~k 112 (489)
...|.+ -.++-++..+-..-+=+|.+.
T Consensus 72 a~AG~a----a~LpgvvA~~t~~PVIgVP~~ 98 (170)
T 1xmp_A 72 AGAGGA----AHLPGMVAAKTNLPVIGVPVQ 98 (170)
T ss_dssp EEEESS----CCHHHHHHTTCCSCEEEEEEC
T ss_pred EECCch----hhhHHHHHhccCCCEEEeeCC
Confidence 777654 368888887643334445444
No 91
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=46.89 E-value=55 Score=29.02 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=33.7
Q ss_pred CchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC-CCCChHHHHHH
Q 011276 309 RSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT-PRDVTPEATKE 379 (489)
Q Consensus 309 ~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t-~~D~T~eav~~ 379 (489)
+-...+.++|++. |+++..+..- .+.++|.+++... ..|-+|.+||-|.- ..+...+.++.
T Consensus 11 s~~~~i~~~l~~~-----G~~~~v~~~~-~~~~~i~~~l~~~----~~~~iil~gGpg~~~~~~~~~~l~~~ 72 (192)
T 1i1q_B 11 SFTWNLADQLRTN-----GHNVVIYRNH-IPAQTLIDRLATM----KNPVLMLSPGPGVPSEAGCMPELLTR 72 (192)
T ss_dssp SSHHHHHHHHHHT-----TCEEEEEETT-SCSHHHHHHHTTC----SSEEEEECCCSSCGGGSTTHHHHHHH
T ss_pred cHHHHHHHHHHHC-----CCeEEEEECC-CCHHHHHHHhhhc----cCCeEEECCCCcCchhCchHHHHHHH
Confidence 3457788999998 9876543321 1234555444321 23447777776653 33455555543
No 92
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=46.69 E-value=22 Score=33.25 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=25.1
Q ss_pred HHHHHHHHh-CCCeEEEEEeecCCH--HHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011276 39 AMLLAAAMQ-QHCKLIDLGIVRDDE--EELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~-~G~~~~~~~~v~Dd~--~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
..++.+++. .|..+++.--. |.- ....++++.+++-++|=|+|+||..-
T Consensus 107 ~~~~~Li~~a~~~~vTFHRAF-D~~~~~d~~~ale~L~~lGv~rILTSG~~~~ 158 (224)
T 2bdq_A 107 EAIEQLLPATQGLPLVFHMAF-DVIPKSDQKKSIDQLVALGFTRILLHGSSNG 158 (224)
T ss_dssp HHHHHHHHHHTTCCEEECGGG-GGSCTTTHHHHHHHHHHTTCCEEEECSCSSC
T ss_pred HHHHHHHHHhCCCeEEEECch-hccCCcCHHHHHHHHHHcCCCEEECCCCCCC
Confidence 344444433 25566554321 111 22234455554446888999988764
No 93
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=45.71 E-value=20 Score=32.20 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=38.6
Q ss_pred HHHHHHHHh--CCCeEEEEEeec---CCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011276 39 AMLLAAAMQ--QHCKLIDLGIVR---DDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 39 ~~l~a~l~~--~G~~~~~~~~v~---Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
-.|.+.|++ .|++|.+++.-. .|.-.+...+.+++. .++|.-|+..|||.|
T Consensus 38 ~~i~~~L~~~~~G~eV~D~G~~s~~s~DYPd~a~~vA~~V~~g~~d~GIliCGTGiG 94 (179)
T 3k7p_A 38 ENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVARKEVEFGVLAAGSGIG 94 (179)
T ss_dssp HHHHHHHHHTCTTEEEEECSCSSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHH
T ss_pred HHHHHHHHhcCCCCeEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEccCcHH
Confidence 456778888 999999998754 345666666666654 358999999999976
No 94
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=45.70 E-value=19 Score=31.42 Aligned_cols=109 Identities=13% Similarity=0.125 Sum_probs=62.0
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcC---CCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccc
Q 011276 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVP---DDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERE 384 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~---Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~ 384 (489)
|..+..+.+.|.+.+... |++|...+.-. .|...+...+.+++....+|.-|...|||.|- +=+.++
T Consensus 8 DhaG~~lK~~i~~~L~~~-G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~--------siaANK- 77 (149)
T 3he8_A 8 DHGGYNLKREIADFLKKR-GYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGI--------SIAANK- 77 (149)
T ss_dssp CGGGHHHHHHHHHHHHHT-TCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHH--------HHHHHT-
T ss_pred CchhHHHHHHHHHHHHHC-CCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHH--------HHHhhc-
Confidence 444444444443333333 99999987653 46778888888887767899999999999652 222222
Q ss_pred cccHHHHHHhcccccCC-CccccccceeEECCEEEEEcCCCHHHHHHHHHHH
Q 011276 385 TPGLLYVMMQESLKVTP-FAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL 435 (489)
Q Consensus 385 l~g~~e~~~~~~~~~~p-~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i 435 (489)
.||+. ..+-..+ .+. .+-..|+..|++|++--.....+.+.+
T Consensus 78 v~GIR-----AAl~~d~~sA~----~ar~hNnaNVl~lG~rvig~~~A~~iv 120 (149)
T 3he8_A 78 VPGIR-----AAVCTNSYMAR----MSREHNDANILALGERVVGLDLALDIV 120 (149)
T ss_dssp STTCC-----EEECSSHHHHH----HHHHTTCCSEEEEETTTSCHHHHHHHH
T ss_pred CCCeE-----EEEeCCHHHHH----HHHHhCCCcEEEEcccccCHHHHHHHH
Confidence 22221 0000011 111 223358889999998755544444433
No 95
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=44.73 E-value=1e+02 Score=27.88 Aligned_cols=77 Identities=4% Similarity=-0.041 Sum_probs=51.1
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeec---------CCHHHHHHHHHHHHhc--CC
Q 011276 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVR---------DDEEELEKTLDNAFSA--GI 77 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~---------Dd~~~i~~~l~~~~~~--~~ 77 (489)
.||+|+++-. .....+....+++.|+++....... .+++.+.+.++++.+. ++
T Consensus 109 ~rvgvlt~~~----------------~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 109 RKLWIGTPYI----------------KERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp CEEEEEESSC----------------HHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred CeEEEEeCCc----------------hHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 4899997632 1224577788899999987654322 2567788887777655 79
Q ss_pred CEEEEeCCCcCCCCCchHHHHHhcC
Q 011276 78 DILLTSGGVSMGDKDFVKPLLQKKG 102 (489)
Q Consensus 78 DlvittGG~s~G~~D~~~~~l~~~G 102 (489)
|.||.. .|...-.++..+.=+.+|
T Consensus 173 daIvLg-CT~l~~~~~~~~l~~~~g 196 (223)
T 2dgd_A 173 DAVYIA-CTALSTYEAVQYLHEDLD 196 (223)
T ss_dssp SEEEEC-CTTSCCTTHHHHHHHHHT
T ss_pred CEEEEe-CCcccHHHHHHHHHHHhC
Confidence 998875 677776665554434454
No 96
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=44.60 E-value=2.1e+02 Score=28.23 Aligned_cols=84 Identities=10% Similarity=0.078 Sum_probs=43.5
Q ss_pred HHHHHhcCCCEEEEeCCC-cCCCCC-chHHHHHhcC-CeEEeeeeecCCCc------eeeEEEccCCCCccccccEEEEE
Q 011276 69 LDNAFSAGIDILLTSGGV-SMGDKD-FVKPLLQKKG-TIYFNKVCMKPGKP------LTFAEINIKPTDDVMVNKILAFG 139 (489)
Q Consensus 69 l~~~~~~~~DlvittGG~-s~G~~D-~~~~~l~~~G-~~~f~~v~~kPGkp------~~~a~~~~~~~~~~~~~~~~v~~ 139 (489)
+.+.+. ++|+||.+-.+ +..... ++.+.++.+. .-.+-.+++.+|.. +..-.. ++..+++
T Consensus 251 l~~~~~-~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~~~~~~~~~~----------~~v~i~g 319 (384)
T 1l7d_A 251 VLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVK----------HGVKIVG 319 (384)
T ss_dssp HHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEE----------TTEEEEC
T ss_pred HHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeecccCCcEEEE----------CCEEEEE
Confidence 556665 59999976522 111122 3577887765 33444455544432 111111 2455666
Q ss_pred cCCCh----HHHHHHHHHHHHHHHHHhc
Q 011276 140 LPGNP----VSCIVCFHLYIVPAIRHLS 163 (489)
Q Consensus 140 LPGnP----~aa~~~~~~~v~P~L~~l~ 163 (489)
.+..| ..+...+..-..|++..+.
T Consensus 320 ~~~~p~~~~~~a~~l~~~~~~~~~~~~~ 347 (384)
T 1l7d_A 320 HTNVPSRVAADASPLFAKNLLNFLTPHV 347 (384)
T ss_dssp CSSGGGGGHHHHHHHHHHHHHHHHGGGE
T ss_pred eCCCcchhHHHHHHHHHHhHHHHHHHHH
Confidence 55554 4344445555567776664
No 97
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=43.11 E-value=20 Score=31.85 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=37.9
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcC---CCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011276 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVP---DDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~---Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
|..+..+.+.|.+.+... |++|..++.-. .|..++...+.+++....+|.-|+..|||.+
T Consensus 29 DhaG~~lK~~i~~~L~~~-G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGTGiG 91 (166)
T 3s5p_A 29 DHGGRDLRMFLQQRASAH-GYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGTGIG 91 (166)
T ss_dssp CGGGHHHHHHHHHHHHHT-TCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESSSHH
T ss_pred CchHHHHHHHHHHHHHHC-CCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCcHH
Confidence 444444444433333332 99999998653 2455677777777766789999999999965
No 98
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=42.99 E-value=13 Score=34.70 Aligned_cols=66 Identities=17% Similarity=0.082 Sum_probs=47.9
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCC-EEEEeCCCcCCCCCchHHHHHhc
Q 011276 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGID-ILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~D-lvittGG~s~G~~D~~~~~l~~~ 101 (489)
.||-++-..+.+++.|.++..+..-+| ..++..+|+.+.+++++ -|++.|++| |+.|++-..+.-+
T Consensus 50 fDSi~~~~~~~~~~~~~~~~~~~~eKD-~TD~e~Al~~~~~~~~~~~I~i~Ga~G-gRlDH~lani~lL 116 (222)
T 3mel_A 50 FDSLSREEYHFVQETTETLIQAPAEKD-DTDTQLALQEALQRFPQAEMTIIGATG-GRIDHLLANLWLP 116 (222)
T ss_dssp CTTSCTTHHHHHHHHCSSEEECCSSCS-SCHHHHHHHHHHHHCTTSEEEEECCCS-SCHHHHHHHHTGG
T ss_pred cccCCHHHHHHHHhcCCcEEECCccCC-CCHHHHHHHHHHHhCCCceEEEEccCC-CCHHHHHHHHHHH
Confidence 366666666778888887766655444 45577777777665676 899999998 7999987776544
No 99
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=42.75 E-value=48 Score=29.93 Aligned_cols=65 Identities=17% Similarity=0.126 Sum_probs=48.1
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCC
Q 011276 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF 367 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~ 367 (489)
.+.++-+.+++.| ..|-...+++..|+.+ |+++...+. .-..+++.+++++. ++|+|..|.-...
T Consensus 87 ~~~~vll~~~~gd-----~H~iG~~~va~~l~~~-----G~~v~~LG~-~vp~~~l~~~~~~~----~~d~v~lS~~~~~ 151 (210)
T 1y80_A 87 SVGKIVLGTVKGD-----LHDIGKNLVAMMLESG-----GFTVYNLGV-DIEPGKFVEAVKKY----QPDIVGMSALLTT 151 (210)
T ss_dssp CCCEEEEEEBTTC-----CCCHHHHHHHHHHHHT-----TCEEEECCS-SBCHHHHHHHHHHH----CCSEEEEECCSGG
T ss_pred CCCEEEEEeCCCc-----ccHHHHHHHHHHHHHC-----CCEEEECCC-CCCHHHHHHHHHHc----CCCEEEEeccccc
Confidence 3457766676554 4455667888899999 999998875 45677888888764 7999999986543
No 100
>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S*
Probab=42.67 E-value=12 Score=37.19 Aligned_cols=115 Identities=16% Similarity=0.203 Sum_probs=63.1
Q ss_pred EEcChHHHHHHHHHhCCCeEEEEEeecCC-HHHHHHHHHHHHh--cCCCEEEEeCCCcCCCC------------CchHHH
Q 011276 33 IRDSNRAMLLAAAMQQHCKLIDLGIVRDD-EEELEKTLDNAFS--AGIDILLTSGGVSMGDK------------DFVKPL 97 (489)
Q Consensus 33 i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd-~~~i~~~l~~~~~--~~~DlvittGG~s~G~~------------D~~~~~ 97 (489)
+.|+..+.+..++.+ .+++.+...+-+. -++..+.++++++ +++|++|.+|.+..... +.++++
T Consensus 24 lL~~~~P~l~~lll~-~I~L~yhptlm~~~G~~ae~~l~~~~~~~~~~dILlVeGsV~~~~~G~y~~~gg~~~l~~l~e~ 102 (335)
T 3uqy_S 24 FIRSAHPLAKDVILS-LISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRA 102 (335)
T ss_dssp HHTCBTTBHHHHHHH-TEEEEEETTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBCBCGGGGTTBEETTEEHHHHHHHH
T ss_pred HHCCCCCCHHHHHhc-CceEeechhhhhhhhHHHHHHHHHHHhcCCCCeEEEEeccCCCCCCcceeccCCcHHHHHHHHH
Confidence 346666778777666 5777777666554 2334455554433 35899999999987543 223333
Q ss_pred HHhcCCeE-------Eeeeee-cCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHH
Q 011276 98 LQKKGTIY-------FNKVCM-KPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYI 155 (489)
Q Consensus 98 l~~~G~~~-------f~~v~~-kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v 155 (489)
..+---++ +-||.- +| .|+...-++. -..+++++.+||.|..-...+..++
T Consensus 103 ~~~ak~VIAvGsCA~~GGi~a~~~-npt~~~gv~~------vi~~~~di~IPGCPP~Pe~i~~~l~ 161 (335)
T 3uqy_S 103 AAGASAIIAWGTCASWGCVQAARP-NPTQATPIDK------VITDKPIIKVPGCPPIPDVMSAIIT 161 (335)
T ss_dssp HHHEEEEEEEHHHHHTCHHHHSTT-CTTCBCCGGG------TCCSSCEEEECSSSCCHHHHHHHHH
T ss_pred ccCCCEEEEeccccccCCccCCCC-CcccCcCHHH------hCCCCCEEEEeCCCCCHHHHHHHHH
Confidence 33321122 123322 22 2221111110 0012468999999998888776663
No 101
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=42.37 E-value=28 Score=31.56 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
.++...+.+++.++. +.--+.++-.+..++. ++++|+||+-||+
T Consensus 18 ~~~~~i~~e~~~~i~---i~~~~l~~~v~~a~~~-~~~~dVIISRGgt 61 (196)
T 2q5c_A 18 NLFPKLALEKNFIPI---TKTASLTRASKIAFGL-QDEVDAIISRGAT 61 (196)
T ss_dssp HHHHHHHHHHTCEEE---EEECCHHHHHHHHHHH-TTTCSEEEEEHHH
T ss_pred HHHHHHHhhhCCceE---EEECCHHHHHHHHHHh-cCCCeEEEECChH
Confidence 566777777776543 3444455444444555 5679999999984
No 102
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=42.06 E-value=16 Score=35.77 Aligned_cols=72 Identities=17% Similarity=0.220 Sum_probs=39.8
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
+||+|+|.+...... .. ...+..+ +...+..+|++.|+++..+..- ++.+.+.+. ++ ++|-||.+||-
T Consensus 29 ~~P~IGI~~~~~~~~--~~--~~~~~~~--~~~~~~~~l~~~G~~~~vv~~~-~~~~~i~~~----l~-~~dglil~GG~ 96 (315)
T 1l9x_A 29 KKPIIGILMQKCRNK--VM--KNYGRYY--IAASYVKYLESAGARVVPVRLD-LTEKDYEIL----FK-SINGILFPGGS 96 (315)
T ss_dssp CCCEEEEECEECCSH--HH--HTTCSEE--EEHHHHHHHHHTTCEEEEECSS-CCHHHHHHH----HH-HSSEEEECCCC
T ss_pred CCCEEEEECCccccc--cc--ccCccee--hHHHHHHHHHHCCCEEEEEecC-CCHHHHHHH----Hh-cCCEEEEeCCC
Confidence 579999987521110 00 0012222 2333567788889988754322 235544433 34 38999999995
Q ss_pred -cCCC
Q 011276 87 -SMGD 90 (489)
Q Consensus 87 -s~G~ 90 (489)
++.+
T Consensus 97 ~~v~p 101 (315)
T 1l9x_A 97 VDLRR 101 (315)
T ss_dssp CCTTT
T ss_pred cccCh
Confidence 5544
No 103
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate metabolism, cytoplasm, fucose metabolism, manganese, metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A 3a9t_A*
Probab=41.48 E-value=23 Score=37.97 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=43.9
Q ss_pred eeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHH-------HHHHHHHhC-------CCeEEEEEeecCCHHHHHHHHHH
Q 011276 6 YRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRA-------MLLAAAMQQ-------HCKLIDLGIVRDDEEELEKTLDN 71 (489)
Q Consensus 6 ~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~-------~l~a~l~~~-------G~~~~~~~~v~Dd~~~i~~~l~~ 71 (489)
-++|||||++|+|.-. +.++++-.. .++.++.+. +++++..+-+-++.++.++..+.
T Consensus 9 ~~~~kiGi~p~~dgr~---------~~~re~l~~~~~~~a~~~~~~l~~~l~~~~g~~vevV~~~~~I~~~~eA~~~ae~ 79 (595)
T 3a9s_A 9 GNLPKIGIRPTIDGRR---------KGVRESLEETTMNMAKAVAKLLEENVFYYNGQPVECVIADTCIGGVKEAAEAAEK 79 (595)
T ss_dssp SBCCEEEEEEBCCCCT---------TTHHHHHHHHHHHHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHH
T ss_pred cCCceEEEEecccccc---------ccchhchhHHHHHHHHHHHHHHHHHHhhccCCCeEEEECCCeeCCHHHHHHHHHH
Confidence 3679999999998753 333444333 233444443 66888777555667766666666
Q ss_pred HHhcCCCEEEE
Q 011276 72 AFSAGIDILLT 82 (489)
Q Consensus 72 ~~~~~~Dlvit 82 (489)
..+++.|++|+
T Consensus 80 F~~~~vd~ii~ 90 (595)
T 3a9s_A 80 FAREGVGVSIT 90 (595)
T ss_dssp HHHHTEEEEEE
T ss_pred HHHcCCCEEEE
Confidence 65557899886
No 104
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=41.35 E-value=27 Score=32.95 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=48.2
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhc------CCCEEEEeCCCcCCCCCchHHHHHhc
Q 011276 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSA------GIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~------~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
.||-++-..+.+++.|.++.. ..-+| ..++..+|+.+.++ +++-|+..|++| |+.|++-..+.-+
T Consensus 76 ~DSi~~~~~~~~~~~~~~i~~-~peKD-~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~G-GR~DH~Lani~lL 146 (247)
T 3s4y_A 76 FDSIRPEVREYYATKGCELIS-TPDQD-HTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLA-GRFDQIMASVNTL 146 (247)
T ss_dssp CSSSCHHHHHHHHHTTCEEEE-CCCTT-SCHHHHHHHHHHHHHHHTTCCCSEEEEECCSS-SSHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHhcCCEEEE-CCCCC-cCHHHHHHHHHHHhhhhccCCCCEEEEEecCC-CchhHHHHHHHHH
Confidence 478778888889999988765 33344 45577777766542 589999999998 7999988776654
No 105
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=41.17 E-value=45 Score=31.14 Aligned_cols=48 Identities=17% Similarity=0.009 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
..+...+++.|+++..+....+|.+...+.++.++++++|-||+.+..
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 71 (305)
T 3g1w_A 24 KGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAID 71 (305)
T ss_dssp HHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSS
T ss_pred HHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 445667888999988756667788888888988887679999998754
No 106
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=41.00 E-value=48 Score=28.86 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=51.8
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCC
Q 011276 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF 367 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~ 367 (489)
+++++-+.+++.+. .|-...+++..|+.. |++|...+.- -..++|.+++.+. ++|+|..|.=.+
T Consensus 17 ~~~~vlla~~~gd~-----HdiG~~~va~~l~~~-----G~eVi~lG~~-~p~e~lv~aa~~~----~~diV~lS~~~~- 80 (161)
T 2yxb_A 17 RRYKVLVAKMGLDG-----HDRGAKVVARALRDA-----GFEVVYTGLR-QTPEQVAMAAVQE----DVDVIGVSILNG- 80 (161)
T ss_dssp CSCEEEEEEESSSS-----CCHHHHHHHHHHHHT-----TCEEECCCSB-CCHHHHHHHHHHT----TCSEEEEEESSS-
T ss_pred CCCEEEEEeCCCCc-----cHHHHHHHHHHHHHC-----CCEEEECCCC-CCHHHHHHHHHhc----CCCEEEEEeech-
Confidence 56788888887664 355567888899999 9999987643 3556777777653 799999987544
Q ss_pred CCCCChHHHHHHhh
Q 011276 368 TPRDVTPEATKELI 381 (489)
Q Consensus 368 t~~D~T~eav~~~~ 381 (489)
.+.+.+.++.
T Consensus 81 ----~~~~~~~~~i 90 (161)
T 2yxb_A 81 ----AHLHLMKRLM 90 (161)
T ss_dssp ----CHHHHHHHHH
T ss_pred ----hhHHHHHHHH
Confidence 3444455444
No 107
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=40.74 E-value=23 Score=32.04 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=38.9
Q ss_pred cChHHH----HHHHHHhCC--CeEEEEEeec----CCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011276 35 DSNRAM----LLAAAMQQH--CKLIDLGIVR----DDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 35 dsn~~~----l~a~l~~~G--~~~~~~~~v~----Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
|-.++- |.+.|++.| ++|.+++.-. .|.-.+...+.+++. .++|.-|...|+|.|
T Consensus 37 DHaG~~LK~~i~~~L~~~G~g~eV~D~G~~s~~e~~DYPd~a~~vA~~V~~ge~d~GIliCGTGiG 102 (184)
T 3sgw_A 37 DDAGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDGKVDRALMICGTGLG 102 (184)
T ss_dssp CGGGHHHHHHHHHHHTTCTTEEEEEECSCCSTTCCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHH
T ss_pred CchhHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCcHH
Confidence 444554 455677788 7999998751 356677777777654 358999999999876
No 108
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=40.52 E-value=35 Score=31.30 Aligned_cols=54 Identities=19% Similarity=0.109 Sum_probs=33.4
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011276 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
.+++||-.|+ .|...+.+.|++. |+++..+.. .++.+++. . . ++|.||.+||-+
T Consensus 25 ~~I~iiD~g~---------~~~~~i~~~l~~~-----G~~~~vv~~-~~~~~~l~----~--~--~~dglil~Gg~~ 78 (218)
T 2vpi_A 25 GAVVILDAGA---------QYGKVIDRRVREL-----FVQSEIFPL-ETPAFAIK----E--Q--GFRAIIISGGPN 78 (218)
T ss_dssp TCEEEEECST---------TTTHHHHHHHHHT-----TCCEEEECT-TCCHHHHH----H--H--TCSEEEEEC---
T ss_pred CeEEEEECCC---------chHHHHHHHHHHC-----CCEEEEEEC-CCChHHHh----h--c--CCCEEEECCCCc
Confidence 4788887664 3446788899988 876553332 22344433 2 3 699999999865
No 109
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=40.27 E-value=1.2e+02 Score=28.46 Aligned_cols=76 Identities=12% Similarity=-0.012 Sum_probs=52.9
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCC
Q 011276 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF 367 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~ 367 (489)
..+++-+.+++.+ ..|-....++..|+.+ |++|...+.-- ..++|.+++++. ++|+|..|.-...
T Consensus 122 ~~~~vlla~~~gd-----~HdiG~~iva~~L~~~-----G~~Vi~LG~~v-p~e~l~~~~~~~----~~d~V~lS~l~~~ 186 (258)
T 2i2x_B 122 TKGTVVCHVAEGD-----VHDIGKNIVTALLRAN-----GYNVVDLGRDV-PAEEVLAAVQKE----KPIMLTGTALMTT 186 (258)
T ss_dssp CSCEEEEEECTTC-----CCCHHHHHHHHHHHHT-----TCEEEEEEEEC-CSHHHHHHHHHH----CCSEEEEECCCTT
T ss_pred CCCeEEEEeCCCC-----ccHHHHHHHHHHHHHC-----CCEEEECCCCC-CHHHHHHHHHHc----CCCEEEEEeeccC
Confidence 4567777776555 4455667888899999 99999988743 446777777664 7999999987765
Q ss_pred CCCCChHHHHHH
Q 011276 368 TPRDVTPEATKE 379 (489)
Q Consensus 368 t~~D~T~eav~~ 379 (489)
+. +..++.+..
T Consensus 187 ~~-~~~~~~i~~ 197 (258)
T 2i2x_B 187 TM-YAFKEVNDM 197 (258)
T ss_dssp TT-THHHHHHHH
T ss_pred CH-HHHHHHHHH
Confidence 43 344444443
No 110
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=39.97 E-value=26 Score=32.53 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=64.8
Q ss_pred HHHHHHHccccccCCcEEEEEEEc------CCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccccc
Q 011276 313 RAVSVVNSSSEKLGGAKVVATDVV------PDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETP 386 (489)
Q Consensus 313 ~l~~~l~~~~~~~~G~~v~~~~~v------~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~ 386 (489)
.+.+.|++. |++|..++.- +.|...+...+.+++....+|.-|+..|||.|. +=+.++ .|
T Consensus 24 ~i~~~L~~~-----G~eV~D~G~~s~~d~~s~DYPd~a~~vA~~V~~g~~d~GIliCGTGiG~--------sIAANK-v~ 89 (216)
T 2ppw_A 24 SLKEATDKK-----GYQLFNYGMRGEEGESQLTYVQNGLMAAILLNTKAVDFVVTGCGTGVGA--------MLALNS-FP 89 (216)
T ss_dssp HHHHHHHHH-----TCEEEECSCCSCTTCCCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHH--------HHHHTT-ST
T ss_pred HHHHHHHHC-----CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCCcHHH--------HHHhhc-CC
Confidence 677788888 9999999764 346888888888888767899999999999652 222222 22
Q ss_pred cHHHHHHhcccccCC-CccccccceeEECCEEEEEcCC------CHHHH-HHHHHHHH
Q 011276 387 GLLYVMMQESLKVTP-FAMLSRSAAGIRGSTLIINMPG------NPNAV-AECMEALL 436 (489)
Q Consensus 387 g~~e~~~~~~~~~~p-~a~l~r~~~g~~~~~~v~~LPG------~P~a~-~~~~~~il 436 (489)
|+. ..+-..+ .+. .+...|+..|++||+ -+..+ +.+++.++
T Consensus 90 GIR-----AAlc~d~~sA~----laR~HNnANVL~lG~~rvi~~g~ela~~~Iv~~fL 138 (216)
T 2ppw_A 90 GVV-----CGLAVDPTDAY----LYSQINGGNALSIPYAKGFGWGAELTLKLMFERLF 138 (216)
T ss_dssp TCC-----EEECSSHHHHH----HHHHHTCCSEEEEESSTTCCTTHHHHHHHHHHHHH
T ss_pred CeE-----EEEeCCHHHHH----HHHHhcCceEEEeCCceecccCHHHHHHHHHHHHH
Confidence 221 0000111 111 233358899999998 35555 46666654
No 111
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=38.88 E-value=35 Score=29.89 Aligned_cols=65 Identities=15% Similarity=0.057 Sum_probs=39.5
Q ss_pred ceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCC-HHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011276 289 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDD-VGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd-~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
.|| |+.+||.+..|- +..+++.|... ..+.....-... ...+.+.+...+....+|+|+...|+=
T Consensus 20 ~pr--Vl~iGDSit~G~-----~~~l~~~l~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~N 85 (200)
T 4h08_A 20 LPH--VLLIGNSITRGY-----YGKVEAALKEK------AYVGRLSNSKSVGDPALIEELAVVLKNTKFDVIHFNNGLH 85 (200)
T ss_dssp SCE--EEEEESHHHHHH-----HHHHHHHTTTT------CEEEEEEESCCTTCHHHHHHHHHHHHHSCCSEEEECCCSS
T ss_pred CCe--EEEEchhHHhhh-----HHHHHHHhccC------CeEEEEeccCCccHHHHHHHHHHHHhcCCCCeEEEEeeeC
Confidence 355 566899997652 23455555443 356665554433 344555666655446899999987764
No 112
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=38.87 E-value=87 Score=27.75 Aligned_cols=86 Identities=7% Similarity=0.010 Sum_probs=54.5
Q ss_pred EEEEeCCcccC-CCccCCc---h--HHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhc-CCCcEEEEeCCC
Q 011276 293 AILTVSDTVAS-GAGPDRS---G--PRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDI-DKMDLILTLGGT 365 (489)
Q Consensus 293 ~Ii~~GdEi~~-G~~~D~n---~--~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~-~~~DlVIttGG~ 365 (489)
-|+.+||.+.. |.-.+.. + ....+.|.+.... ++.+....+-.+....+.+.+...+.. ...|+||...|+
T Consensus 5 ~i~~~GDSit~~g~~~~~~~~~g~~~~~~~~l~~~~~~--~~~v~n~g~~G~~~~~~~~~~~~~~~~~~~pd~vvi~~G~ 82 (240)
T 3mil_A 5 KFLLFGDSITEFAFNTRPIEDGKDQYALGAALVNEYTR--KMDILQRGFKGYTSRWALKILPEILKHESNIVMATIFLGA 82 (240)
T ss_dssp EEEEEESHHHHTTTCSCCSTTCCCCCCHHHHHHHHTTT--TEEEEEEECTTCCHHHHHHHHHHHHHHCCCEEEEEEECCT
T ss_pred cEEEEccchhhhhcCcccccccchHhHHHHHHHHHhcc--ceEEEecCcCcccHHHHHHHHHHHhcccCCCCEEEEEeec
Confidence 47889999987 5443211 1 1123333332111 678999999999999988888877753 379999998876
Q ss_pred CCC----CCCChHHHHHHh
Q 011276 366 GFT----PRDVTPEATKEL 380 (489)
Q Consensus 366 G~t----~~D~T~eav~~~ 380 (489)
=-- ....+.+.+.+-
T Consensus 83 ND~~~~~~~~~~~~~~~~~ 101 (240)
T 3mil_A 83 NDACSAGPQSVPLPEFIDN 101 (240)
T ss_dssp TTTSSSSTTCCCHHHHHHH
T ss_pred CcCCccCCCCCCHHHHHHH
Confidence 322 334455555443
No 113
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=37.99 E-value=3e+02 Score=27.05 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHH--------------HHHHHHhcCCCEEEEeCCCcCC-CCC-chHHHHHh
Q 011276 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEK--------------TLDNAFSAGIDILLTSGGVSMG-DKD-FVKPLLQK 100 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~--------------~l~~~~~~~~DlvittGG~s~G-~~D-~~~~~l~~ 100 (489)
-|..+...++.+|++++.+..-++..+.+++ .+.+.+. ++|+||.+=|.... ... +..+.++.
T Consensus 179 iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~-~aDvVi~~~~~p~~~t~~li~~~~l~~ 257 (377)
T 2vhw_A 179 AGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVK-RADLVIGAVLVPGAKAPKLVSNSLVAH 257 (377)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHH-HCSEEEECCCCTTSCCCCCBCHHHHTT
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHc-CCCEEEECCCcCCCCCcceecHHHHhc
Confidence 4566777888889887766654433333322 2445555 49999987654432 122 35667776
Q ss_pred cC-CeEEeeeeecCC
Q 011276 101 KG-TIYFNKVCMKPG 114 (489)
Q Consensus 101 ~G-~~~f~~v~~kPG 114 (489)
+- .-.+-.+++.+|
T Consensus 258 mk~g~~iV~va~~~G 272 (377)
T 2vhw_A 258 MKPGAVLVDIAIDQG 272 (377)
T ss_dssp SCTTCEEEEGGGGTT
T ss_pred CCCCcEEEEEecCCC
Confidence 64 333444555455
No 114
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.19.1.0
Probab=37.80 E-value=12 Score=35.90 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=61.1
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCC-HHHHHHHHHHHHh--cCCCEEEEeCCCcCCC-CC---------chHHHHHh
Q 011276 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDD-EEELEKTLDNAFS--AGIDILLTSGGVSMGD-KD---------FVKPLLQK 100 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd-~~~i~~~l~~~~~--~~~DlvittGG~s~G~-~D---------~~~~~l~~ 100 (489)
.|+..+.+..++.+ .+++.+...+.+. -++..+.|+++++ +++||+|.+|.+. |+ .| -..+.+.+
T Consensus 22 L~~~~p~l~~ll~~-~I~l~yhptl~~~~G~~a~~~l~~~~~~~~~~dilvVEGsV~-~p~~~~g~~~~gg~~~~e~l~e 99 (269)
T 3myr_A 22 TRAHAPTLEDLILD-FISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIP-GPDANPGFSTVAGHSNYSILME 99 (269)
T ss_dssp HHCCSSCHHHHHHH-TCEEEECTTTCSSCHHHHHHHHHHHHHHTTTTCEEEEESBEE-CTTSCGGGBEETTEEHHHHHHH
T ss_pred HCCCCCCHHHHHhC-CeeEEechhhhhhhhHHHHHHHHHHHhcCCCCeEEEEeccCC-CCcCCCccceeCChHHHHHHHH
Confidence 45555667766655 4777777666543 3445555555543 3589999999997 33 21 12333333
Q ss_pred c-C--CeEE--------eeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHH
Q 011276 101 K-G--TIYF--------NKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYI 155 (489)
Q Consensus 101 ~-G--~~~f--------~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v 155 (489)
+ - +.++ -||.-.-..++...-++. -.++++++.+||.|..-...++.++
T Consensus 100 ~~~~~k~VIA~G~CA~~GGi~a~~~n~~~~~gv~~------~i~~~vdi~IPGCPp~Pe~i~~~l~ 159 (269)
T 3myr_A 100 TVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMD------LVRDKPVINVPGCPPIPMVITGVIA 159 (269)
T ss_dssp HHTTCSEEEEEHHHHHHCHHHHSTTCTTCEECHHH------HCCSSCEEEECSSSCCHHHHHHHHH
T ss_pred HcccCCEEEEeccccccCCccCCCCCccccCCHHH------hCCCCCEEEecCCCCCHHHHHHHHH
Confidence 2 1 3222 233221111221111110 0012578999999998887777664
No 115
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=37.45 E-value=53 Score=30.74 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=24.3
Q ss_pred HHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011276 314 AVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 314 l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
..+.+.+. |+.+..+....| .+ +. ..++ .+|-||.+||-+
T Consensus 33 ~~~~l~~a-----G~~pv~lp~~~~-~~-~~----~~l~--~~DGlil~GG~~ 72 (254)
T 3fij_A 33 YVDAIQKV-----GGFPIALPIDDP-ST-AV----QAIS--LVDGLLLTGGQD 72 (254)
T ss_dssp HHHHHHHH-----TCEEEEECCCCG-GG-HH----HHHH--TCSEEEECCCSC
T ss_pred HHHHHHHC-----CCEEEEEeCCCc-hH-HH----HHHh--hCCEEEECCCCC
Confidence 44556666 887765433222 22 33 3444 799999999955
No 116
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=37.02 E-value=79 Score=28.25 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011276 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
.|-..+...|++.|+++.. + +|+++| . ++|.||..||
T Consensus 13 ~n~~si~~al~~~G~~~~v---~-~~~~~l--------~-~~D~lilPG~ 49 (211)
T 4gud_A 13 ANISSVKFAIERLGYAVTI---S-RDPQVV--------L-AADKLFLPGV 49 (211)
T ss_dssp TTHHHHHHHHHHTTCCEEE---E-CCHHHH--------H-HCSEEEECCC
T ss_pred ChHHHHHHHHHHCCCEEEE---E-CCHHHH--------h-CCCEEEECCC
Confidence 4778899999999999863 3 445433 2 3799999884
No 117
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=36.45 E-value=35 Score=31.94 Aligned_cols=51 Identities=18% Similarity=0.098 Sum_probs=39.3
Q ss_pred HHHHHHHccccccCCcEEEEEEEcC------CCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011276 313 RAVSVVNSSSEKLGGAKVVATDVVP------DDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 313 ~l~~~l~~~~~~~~G~~v~~~~~v~------Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
.+.+.|++. |++|..++.-. .|...+...+.+++....+|.-|+..|||.|
T Consensus 40 ~i~~~L~~~-----G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~g~~d~GIliCGTGiG 96 (231)
T 3c5y_A 40 ALTTVAEPL-----GHKVFNYGMYTAEDKASLTYVMNGLLAGILLNSGAADFVVTGCGTGMG 96 (231)
T ss_dssp HHHHHHGGG-----TCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHHTSCSEEEEEESSSHH
T ss_pred HHHHHHHHC-----CCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCCcHH
Confidence 445566666 99999998652 2677888888877766689999999999965
No 118
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=36.37 E-value=1.4e+02 Score=29.44 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHH-------HHHHHHhcCCCEEEEeCCCcCCCCCch-HHHHHhcC
Q 011276 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEK-------TLDNAFSAGIDILLTSGGVSMGDKDFV-KPLLQKKG 102 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~-------~l~~~~~~~~DlvittGG~s~G~~D~~-~~~l~~~G 102 (489)
.-|..++..++.+|+++..+..-+...+...+ .+.+++.+ +|+|+++=-.....+.++ .+.++.+.
T Consensus 174 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~-aDvV~l~~Plt~~t~~li~~~~l~~mk 247 (351)
T 3jtm_A 174 RIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPK-CDVIVINMPLTEKTRGMFNKELIGKLK 247 (351)
T ss_dssp HHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGG-CSEEEECSCCCTTTTTCBSHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhc-CCEEEECCCCCHHHHHhhcHHHHhcCC
Confidence 35678889999999999888766655555443 47777774 999998876655555555 56666664
No 119
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=36.08 E-value=20 Score=33.27 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=38.9
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011276 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
...++++|.++.. . .-.|.|...+.+.|++. |+++..+... +|. .+.| . ++|.|+..||-.
T Consensus 30 ~~~~i~iI~~a~~--~-~~~~~~~~~~~~al~~l-----G~~~~~v~~~-~d~---~~~l----~--~ad~I~lpGG~~ 90 (229)
T 1fy2_A 30 GRRSAVFIPFAGV--T-QTWDEYTDKTAEVLAPL-----GVNVTGIHRV-ADP---LAAI----E--KAEIIIVGGGNT 90 (229)
T ss_dssp TCCEEEEECTTCC--S-SCHHHHHHHHHHHHGGG-----TCEEEETTSS-SCH---HHHH----H--HCSEEEECCSCH
T ss_pred CCCeEEEEECCCC--C-CCHHHHHHHHHHHHHHC-----CCEEEEEecc-ccH---HHHH----h--cCCEEEECCCcH
Confidence 4589999988742 1 12456777778888888 9876544332 442 1222 2 589999999653
No 120
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=35.17 E-value=1.5e+02 Score=26.32 Aligned_cols=86 Identities=15% Similarity=0.254 Sum_probs=58.5
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHH---HHHHHhCCCeEEEEEeec--CCHHHHHHHHHHHHhcCCCEEE
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAML---LAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILL 81 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l---~a~l~~~G~~~~~~~~v~--Dd~~~i~~~l~~~~~~~~Dlvi 81 (489)
.+|+|+||.-|+ |.-+.. ...|+++|+.. +.+++. -.++.+.+.++++.++++++||
T Consensus 6 ~~~~V~IimgS~-----------------SD~~v~~~a~~~L~~~gi~~-ev~V~SaHR~p~~~~~~~~~a~~~g~~ViI 67 (174)
T 3lp6_A 6 ERPRVGVIMGSD-----------------SDWPVMADAAAALAEFDIPA-EVRVVSAHRTPEAMFSYARGAAARGLEVII 67 (174)
T ss_dssp CCCSEEEEESCG-----------------GGHHHHHHHHHHHHHTTCCE-EEEECCTTTCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECcH-----------------HhHHHHHHHHHHHHHcCCCE-EEEEECCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 468899887652 333433 34688999873 455553 5688899998888766799999
Q ss_pred EeCCCcCCCCCchHHHHHhcCCeEEeeeeecCC
Q 011276 82 TSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPG 114 (489)
Q Consensus 82 ttGG~s~G~~D~~~~~l~~~G~~~f~~v~~kPG 114 (489)
...|.+ -+++-++..+-..-+=+|.++-|
T Consensus 68 a~AG~a----a~LpgvvA~~t~~PVIgVP~~~~ 96 (174)
T 3lp6_A 68 AGAGGA----AHLPGMVAAATPLPVIGVPVPLG 96 (174)
T ss_dssp EEEESS----CCHHHHHHHHCSSCEEEEEECCS
T ss_pred EecCch----hhhHHHHHhccCCCEEEeeCCCC
Confidence 877654 37888888765444446665544
No 121
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=35.16 E-value=43 Score=29.46 Aligned_cols=75 Identities=16% Similarity=0.104 Sum_probs=51.3
Q ss_pred HHHHhCCCeEEEEEeecCCHHHHHHHHHHHHh------cCCCEEEEeCCC---cCCCCCchHHHHHhcCCeEEeeeeecC
Q 011276 43 AAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS------AGIDILLTSGGV---SMGDKDFVKPLLQKKGTIYFNKVCMKP 113 (489)
Q Consensus 43 a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~------~~~DlvittGG~---s~G~~D~~~~~l~~~G~~~f~~v~~kP 113 (489)
..|++.|.++ ..-.||-..|. --+++++++ .++|.||+.|=+ +...+||+.....+- .-.++++=
T Consensus 36 ~~l~~~G~~i-~v~~VPGafEi-P~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~g----l~~vsl~~ 109 (157)
T 2i0f_A 36 AALDEAGATY-DVVTVPGALEI-PATISFALDGADNGGTEYDGFVALGTVIRGETYHFDIVSNESCRA----LTDLSVEE 109 (157)
T ss_dssp HHHHHTTCEE-EEEEESSGGGH-HHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSSTTHHHHHHHHHH----HHHHHHHT
T ss_pred HHHHHcCCCe-EEEECCcHHHH-HHHHHHHHhhccccCCCCCEEEEeeeeecCCchHHHHHHHHHHHH----HHHHHhhc
Confidence 3466788544 55678876643 223333332 259999999887 556688888877663 45678888
Q ss_pred CCceeeEEEc
Q 011276 114 GKPLTFAEIN 123 (489)
Q Consensus 114 Gkp~~~a~~~ 123 (489)
|.|+.+|.+-
T Consensus 110 ~vPV~~GVLT 119 (157)
T 2i0f_A 110 SIAIGNGILT 119 (157)
T ss_dssp TCCEEEEEEE
T ss_pred CCCEEEEEeC
Confidence 9999999885
No 122
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=34.62 E-value=56 Score=31.36 Aligned_cols=13 Identities=54% Similarity=0.695 Sum_probs=10.9
Q ss_pred CCcEEEEeCCCCC
Q 011276 355 KMDLILTLGGTGF 367 (489)
Q Consensus 355 ~~DlVIttGG~G~ 367 (489)
.+|.||.+||-|.
T Consensus 90 ~~dgiil~GG~~~ 102 (289)
T 2v4u_A 90 KADGILVPGGFGI 102 (289)
T ss_dssp HCSEEEECSCCSS
T ss_pred hCCEEEecCCCCc
Confidence 6899999998654
No 123
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=33.95 E-value=39 Score=31.25 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=40.4
Q ss_pred HHHHHHHccccccCCcEEEEEEE--c---CCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011276 313 RAVSVVNSSSEKLGGAKVVATDV--V---PDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 313 ~l~~~l~~~~~~~~G~~v~~~~~--v---~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
.+.+.|++. |++|..++. - +.|...+...+.+++....+|.-|+..|||.|
T Consensus 24 ~l~~~L~~~-----G~eV~D~G~~~~~~~~~dYpd~a~~vA~~V~~g~~d~GIliCGTGiG 79 (214)
T 3ono_A 24 ELNSVAGGL-----GHDVFNVGMTDENDHHLTYIHLGIMASILLNSKAVDFVVTGCGTGQG 79 (214)
T ss_dssp HHHHHHHHT-----TCEEEECSCSSTTSSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHH
T ss_pred HHHHHHHHC-----CCEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHH
Confidence 566677777 999999984 1 23677888888888776789999999999965
No 124
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=33.90 E-value=19 Score=31.85 Aligned_cols=75 Identities=12% Similarity=0.097 Sum_probs=51.9
Q ss_pred HHHhCCCeE--EEEEeecCCHHHHHHHHHHHHh-cCCCEEEEeCCC---cCCCCCchHHHHHhcCCeEEeeeeecCCCce
Q 011276 44 AAMQQHCKL--IDLGIVRDDEEELEKTLDNAFS-AGIDILLTSGGV---SMGDKDFVKPLLQKKGTIYFNKVCMKPGKPL 117 (489)
Q Consensus 44 ~l~~~G~~~--~~~~~v~Dd~~~i~~~l~~~~~-~~~DlvittGG~---s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~ 117 (489)
.|++.|+.. +..-.||--.| |--+.+++++ .++|.||+.|=+ +...+||+.....+- .-.++++=|.|+
T Consensus 35 ~l~~~gv~~~~i~v~~VPGafE-iP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~G----l~~v~L~~~vPV 109 (158)
T 1di0_A 35 ELAAKTGGSVEVEIFDVPGAYE-IPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVING----MMQVQLETEVPV 109 (158)
T ss_dssp HHHHHHTTSEEEEEEEESSGGG-HHHHHHHHHHTSCCSEEEEEEECCCCSSBCCHHHHHHHHHH----HHHHHHHHCCCE
T ss_pred HHHHcCCCccceEEEECCcHHH-HHHHHHHHHhcCCCCEEEEeeccccCCCcHHHHHHHHHHHH----HHHHHhhcCCCE
Confidence 455667643 55567888766 3334444443 359999999988 555688888877663 346777888999
Q ss_pred eeEEEc
Q 011276 118 TFAEIN 123 (489)
Q Consensus 118 ~~a~~~ 123 (489)
++|.+-
T Consensus 110 ~~GVLT 115 (158)
T 1di0_A 110 LSVVLT 115 (158)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 999875
No 125
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=33.60 E-value=27 Score=31.36 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=61.2
Q ss_pred HHHHHHHc--cccccCCcEEEEEEEcC---CCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhcccccc
Q 011276 313 RAVSVVNS--SSEKLGGAKVVATDVVP---DDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPG 387 (489)
Q Consensus 313 ~l~~~l~~--~~~~~~G~~v~~~~~v~---Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~g 387 (489)
.+.+.|++ . |++|..++.-. .|..++...+.+++....+|.-|+..|||.+- +=+.+| +||
T Consensus 39 ~i~~~L~~~~~-----G~eV~D~G~~s~~s~DYPd~a~~vA~~V~~g~~d~GIliCGTGiG~--------sIaANK-v~G 104 (179)
T 3k7p_A 39 NLILYVKEAGD-----EFVPVYCGPKTAESVDYPDFASRVAEMVARKEVEFGVLAAGSGIGM--------SIAANK-VPG 104 (179)
T ss_dssp HHHHHHHHTCT-----TEEEEECSCSSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHH--------HHHHHT-STT
T ss_pred HHHHHHHhcCC-----CCeEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEccCcHHH--------hhHhhc-CCC
Confidence 55666776 6 99999987653 46788888888888767899999999999652 222222 222
Q ss_pred HHHHHHhcccccCC-CccccccceeEECCEEEEEcCCCHHHHHHHHHHH
Q 011276 388 LLYVMMQESLKVTP-FAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL 435 (489)
Q Consensus 388 ~~e~~~~~~~~~~p-~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i 435 (489)
++- .+-..+ .+. .+-..|+..|++|++--.....+.+.+
T Consensus 105 IRA-----Alc~d~~sA~----laR~HNnANVL~lG~Rvig~elA~~Iv 144 (179)
T 3k7p_A 105 VRA-----ALCHDHYTAA----MSRIHNDANIVCVGERTTGVEVIREII 144 (179)
T ss_dssp CCE-----EECCSHHHHH----HHHHTTCCSEEEEETTTSCHHHHHHHH
T ss_pred eEE-----EEeCCHHHHH----HHHHhCCCcEEEEcccccCHHHHHHHH
Confidence 210 000011 111 223358899999999755555544433
No 126
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=33.18 E-value=1.6e+02 Score=25.92 Aligned_cols=86 Identities=13% Similarity=0.146 Sum_probs=57.4
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHH---HHHHHhCCCeEEEEEeec--CCHHHHHHHHHHHHhcCCCEEE
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAML---LAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILL 81 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l---~a~l~~~G~~~~~~~~v~--Dd~~~i~~~l~~~~~~~~Dlvi 81 (489)
.+|+|+||.-|+ |.-+.. ...|+++|+. .+.+++. -.++.+.+..+++.++++++||
T Consensus 2 ~~~~V~Iimgs~-----------------SD~~v~~~a~~~l~~~gi~-~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViI 63 (163)
T 3ors_A 2 NAMKVAVIMGSS-----------------SDWKIMQESCNMLDYFEIP-YEKQVVSAHRTPKMMVQFASEARERGINIII 63 (163)
T ss_dssp -CCCEEEEESCG-----------------GGHHHHHHHHHHHHHTTCC-EEEEECCTTTSHHHHHHHHHHTTTTTCCEEE
T ss_pred CCCeEEEEECcH-----------------HHHHHHHHHHHHHHHcCCC-EEEEEECCcCCHHHHHHHHHHHHhCCCcEEE
Confidence 468899887652 333433 3468899987 3455553 5688888888887666789998
Q ss_pred EeCCCcCCCCCchHHHHHhcCCeEEeeeeecCC
Q 011276 82 TSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPG 114 (489)
Q Consensus 82 ttGG~s~G~~D~~~~~l~~~G~~~f~~v~~kPG 114 (489)
...|.+ -+++-++..+-.+-+=+|.++-|
T Consensus 64 a~AG~a----a~LpgvvA~~t~~PVIgVP~~~~ 92 (163)
T 3ors_A 64 AGAGGA----AHLPGMVASLTTLPVIGVPIETK 92 (163)
T ss_dssp EEEESS----CCHHHHHHHHCSSCEEEEEECCT
T ss_pred EECCch----hhhHHHHHhccCCCEEEeeCCCC
Confidence 777654 37888888765444445555433
No 127
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=33.18 E-value=30 Score=34.62 Aligned_cols=52 Identities=17% Similarity=0.100 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCeEEEEEee-cC-CHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Q 011276 38 RAMLLAAAMQQHCKLIDLGIV-RD-DEEELEKTLDNAFSAGIDILLTSGGVSMG 89 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v-~D-d~~~i~~~l~~~~~~~~DlvittGG~s~G 89 (489)
..-+.+.|++.|+++..+.-+ ++ +.+.+.+.++.+.+.++|+||--||=|+.
T Consensus 52 ~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~ 105 (387)
T 3bfj_A 52 VDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGGSPH 105 (387)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESHHHH
T ss_pred HHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCcchh
Confidence 456777888889988666544 33 56778888887776679999988886653
No 128
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=32.84 E-value=27 Score=35.00 Aligned_cols=51 Identities=18% Similarity=0.067 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCeEEEEEee-cC-CHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Q 011276 39 AMLLAAAMQQHCKLIDLGIV-RD-DEEELEKTLDNAFSAGIDILLTSGGVSMG 89 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v-~D-d~~~i~~~l~~~~~~~~DlvittGG~s~G 89 (489)
.-+.+.|++.|+++..+.-+ ++ +.+.+.+.++.+.+.++|+||--||=|+.
T Consensus 49 ~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~ 101 (386)
T 1rrm_A 49 AKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQ 101 (386)
T ss_dssp HHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHH
T ss_pred HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHHH
Confidence 34566777888887655533 33 56777777777766679999988876653
No 129
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=32.80 E-value=33 Score=34.18 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCeEEEEEee-cC-CHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011276 39 AMLLAAAMQQHCKLIDLGIV-RD-DEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v-~D-d~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
.-+.+.|++.|+++..+.-+ ++ +.+.+.+.++.+.+.++|+||-.||=|+
T Consensus 59 ~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv 110 (371)
T 1o2d_A 59 DDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGSP 110 (371)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHHH
T ss_pred HHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 44666788889887666544 33 5677888888777667999998888665
No 130
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=32.68 E-value=86 Score=29.34 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 38 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
-..+...+++.|+++..... .+|.+.-.+.++.++.+++|-||+.+..
T Consensus 21 ~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (313)
T 3m9w_A 21 RDIFVKKAESLGAKVFVQSA-NGNEETQMSQIENMINRGVDVLVIIPYN 68 (313)
T ss_dssp HHHHHHHHHHTSCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred HHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 34467778899999886644 7778888888888887779999998753
No 131
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=32.64 E-value=15 Score=32.57 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=51.9
Q ss_pred HHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC---cCCCCCchHHHHHhcCCeEEeeeeecCCCceeeE
Q 011276 44 AAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV---SMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFA 120 (489)
Q Consensus 44 ~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~---s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~~~a 120 (489)
.|++.|.+-+..-.||--.| |--+.+++++ ++|.||+.|=+ +...+||+.....+- .-.++++=|.|+.+|
T Consensus 42 ~l~~~G~~~i~v~~VPGafE-iP~aak~la~-~yDavIaLG~VIrG~T~Hfd~Va~~vs~G----l~~v~L~~~vPV~~G 115 (160)
T 2c92_A 42 VAAGCGLDDPTVVRVLGAIE-IPVVAQELAR-NHDAVVALGVVIRGQTPHFDYVCDAVTQG----LTRVSLDSSTPIANG 115 (160)
T ss_dssp HHHHTTCSCCEEEEESSGGG-HHHHHHHHHT-SCSEEEEEEEEECCSSTHHHHHHHHHHHH----HHHHHHHHTCCEEEE
T ss_pred HHHHcCCCceEEEECCcHHH-HHHHHHHHHh-cCCEEEEEeeeecCCchHHHHHHHHHHHH----HHHHHhhcCCCEEEE
Confidence 46678875455557888764 3345566665 59999999988 444578887776653 346777788999999
Q ss_pred EEc
Q 011276 121 EIN 123 (489)
Q Consensus 121 ~~~ 123 (489)
.+-
T Consensus 116 VLT 118 (160)
T 2c92_A 116 VLT 118 (160)
T ss_dssp EEE
T ss_pred EcC
Confidence 764
No 132
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=32.63 E-value=1.9e+02 Score=25.50 Aligned_cols=85 Identities=12% Similarity=0.173 Sum_probs=57.5
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHH---HHHHHhCCCeEEEEEeec--CCHHHHHHHHHHHHhcCCCEEEE
Q 011276 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAML---LAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILLT 82 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l---~a~l~~~G~~~~~~~~v~--Dd~~~i~~~l~~~~~~~~Dlvit 82 (489)
+|+|+||.-|+ |.-+.. ...|+++|+. .+.+++. -.++.+.+.++++.++++++||.
T Consensus 5 ~p~V~IimgS~-----------------SD~~v~~~a~~~l~~~gi~-~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa 66 (166)
T 3oow_A 5 SVQVGVIMGSK-----------------SDWSTMKECCDILDNLGIG-YECEVVSAHRTPDKMFDYAETAKERGLKVIIA 66 (166)
T ss_dssp CEEEEEEESSG-----------------GGHHHHHHHHHHHHHTTCE-EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEE
T ss_pred CCeEEEEECcH-----------------HhHHHHHHHHHHHHHcCCC-EEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEE
Confidence 37888887652 333333 3468899985 4556654 56788999998886667899998
Q ss_pred eCCCcCCCCCchHHHHHhcCCeEEeeeeecCC
Q 011276 83 SGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPG 114 (489)
Q Consensus 83 tGG~s~G~~D~~~~~l~~~G~~~f~~v~~kPG 114 (489)
-.|.+. +++-++..+-.+-+=+|.++-|
T Consensus 67 ~AG~aa----~LpgvvA~~t~~PVIgVP~~~~ 94 (166)
T 3oow_A 67 GAGGAA----HLPGMVAAKTTLPVLGVPVKSS 94 (166)
T ss_dssp EECSSC----CHHHHHHHTCSSCEEEEECCCT
T ss_pred ECCcch----hhHHHHHhccCCCEEEeecCcC
Confidence 776543 6888888765444446665444
No 133
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=32.35 E-value=8.7 Score=40.83 Aligned_cols=55 Identities=16% Similarity=0.299 Sum_probs=36.3
Q ss_pred ecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCc--hHHHHHh----cC--CeEEeeeeecC
Q 011276 58 VRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDF--VKPLLQK----KG--TIYFNKVCMKP 113 (489)
Q Consensus 58 v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~--~~~~l~~----~G--~~~f~~v~~kP 113 (489)
+|.=.++|++.+++..+ ++|+||+=||=|+||--- +.+++.+ +| ..+|=.+..-|
T Consensus 116 ~~~~~~~i~~~~~~~~~-~~d~~i~e~~gt~~di~~~~~~~~~~q~~~~~~~~~~~~~h~~~~p 178 (545)
T 1s1m_A 116 IPHITNAIKERVLEGGE-GHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVP 178 (545)
T ss_dssp HHHHHHHHHHHHHHHHT-TCSEEEEEECSCTTSSTTHHHHHHHHHHHHHHCTTSEEEEEEEECC
T ss_pred hhHHHHHHHHHHHHHhc-cCCEEEEECCCChhhhhChHHHHHHHHHhHhhCcCcEEEEEEeCcc
Confidence 44445678888888776 599999999998865442 2344444 46 46666665544
No 134
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=32.06 E-value=21 Score=31.44 Aligned_cols=75 Identities=15% Similarity=0.082 Sum_probs=51.0
Q ss_pred HHHhCCCeE--EEEEeecCCHHHHHHHHHHHHh-cCCCEEEEeCCC---cCCCCCchHHHHHhcCCeEEeeeeecCCCce
Q 011276 44 AAMQQHCKL--IDLGIVRDDEEELEKTLDNAFS-AGIDILLTSGGV---SMGDKDFVKPLLQKKGTIYFNKVCMKPGKPL 117 (489)
Q Consensus 44 ~l~~~G~~~--~~~~~v~Dd~~~i~~~l~~~~~-~~~DlvittGG~---s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~ 117 (489)
.|++.|+.. +..-.||--.|. --+.+++++ .++|.||+.|=+ +...+||+.....+- .-.+++.=|.|+
T Consensus 36 ~l~~~Gv~~~~i~v~~VPGafEi-P~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~G----l~~v~L~~~vPV 110 (157)
T 2obx_A 36 EMADIGGDRFAVDVFDVPGAYEI-PLHARTLAETGRYGAVLGTAFVVNGGIYRHEFVASAVIDG----MMNVQLSTGVPV 110 (157)
T ss_dssp HHHHHHTTSEEEEEEEESSGGGH-HHHHHHHHHHTCCSEEEEEEECCCCSSBCCHHHHHHHHHH----HHHHHHHHCCCE
T ss_pred HHHHcCCCccceEEEECCcHHHH-HHHHHHHHhcCCCCEEEEeeccccCCCcHHHHHHHHHHHH----HHHHHhhcCCCE
Confidence 355667643 555678877663 333344332 359999999988 445588888877663 346777888999
Q ss_pred eeEEEc
Q 011276 118 TFAEIN 123 (489)
Q Consensus 118 ~~a~~~ 123 (489)
++|.+-
T Consensus 111 ~~GVLT 116 (157)
T 2obx_A 111 LSAVLT 116 (157)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 999875
No 135
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=31.97 E-value=48 Score=29.10 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=32.0
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
||+|+|++.- .|-..+..+|++.|+++..+ +++ + .++ ++|.||.+||-
T Consensus 2 ~p~Igi~~~~------------------~~~~~~~~~l~~~G~~~~~~---~~~-~--------~l~-~~dglil~GG~ 49 (191)
T 2ywd_A 2 RGVVGVLALQ------------------GDFREHKEALKRLGIEAKEV---RKK-E--------HLE-GLKALIVPGGE 49 (191)
T ss_dssp -CCEEEECSS------------------SCHHHHHHHHHTTTCCCEEE---CSG-G--------GGT-TCSEEEECSSC
T ss_pred CcEEEEEecC------------------CchHHHHHHHHHCCCEEEEe---CCh-h--------hhc-cCCEEEECCCC
Confidence 6899999741 12234677888999988754 332 1 234 49999999993
No 136
>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase, thiamine pyrophosphokinase, NESG, LPR114, structural genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1}
Probab=31.90 E-value=13 Score=34.73 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=38.1
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCC-EEEEeCCCcCCCCCchHHHHHhc
Q 011276 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGID-ILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~D-lvittGG~s~G~~D~~~~~l~~~ 101 (489)
||-++-....+++.|..+..+..-+|+ .+...+|+.+.+++++ .|++.|++| |+.|++-..+.-+
T Consensus 52 DSi~~e~~~~~~~~~~~~~~~~~~KD~-TD~e~Al~~a~~~~~~~~I~i~Ga~G-gR~DH~laNi~lL 117 (227)
T 3cq9_A 52 DSIDAAELQTVKDALVGAIVVKPDQDH-TDTQLAIKSIFEQLQPDEVHLYGATG-GRLDHLLANMWLV 117 (227)
T ss_dssp ---------CHHHHHHTSEEECCCSSS-CHHHHHHHHHHHHTCCSEEEEESCSS-SCHHHHHHHHSGG
T ss_pred cCCCHHHHHHHHhcCceEEECCCCCCC-CHHHHHHHHHHHhCCCceEEEEcCCC-CchhHHHHHHHHH
Confidence 555555555555556555555445544 4566677777665566 999999998 8999987776543
No 137
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=31.09 E-value=23 Score=31.17 Aligned_cols=75 Identities=17% Similarity=0.121 Sum_probs=51.3
Q ss_pred HHHhCCCe-EEEEEeecCCHHHHHHHHHHHHh-cCCCEEEEeCCC---cCCCCCchHHHHHhcCCeEEeeeeecCCCcee
Q 011276 44 AAMQQHCK-LIDLGIVRDDEEELEKTLDNAFS-AGIDILLTSGGV---SMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLT 118 (489)
Q Consensus 44 ~l~~~G~~-~~~~~~v~Dd~~~i~~~l~~~~~-~~~DlvittGG~---s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~~ 118 (489)
.|++.|+. -+..-.||-..| |--+.+++++ .++|.||+.|=+ +...+||+.....+- .-.++++=|.|+.
T Consensus 38 ~l~~~Gv~~~i~v~~VPGafE-iP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~g----l~~v~L~~~vPV~ 112 (156)
T 1c2y_A 38 TFKKYSVNEDIDVVWVPGAYE-LGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSG----VLSAGLNSGVPCV 112 (156)
T ss_dssp HHHHTTCCSCCEEEEESSHHH-HHHHHHHHHHTTCCSEEEEEEECCCCSSTHHHHHHHHHHHH----HHHHHHHHTSCEE
T ss_pred HHHHcCCCCceEEEECCcHHH-HHHHHHHHHhcCCCCEEEEecccccCCchHHHHHHHHHHHH----HHHHHhhcCCCEE
Confidence 46677873 345557888766 4444455443 359999999988 344477877776653 3467778889999
Q ss_pred eEEEc
Q 011276 119 FAEIN 123 (489)
Q Consensus 119 ~a~~~ 123 (489)
+|.+.
T Consensus 113 ~GVLT 117 (156)
T 1c2y_A 113 FGVLT 117 (156)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99885
No 138
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=31.08 E-value=1.1e+02 Score=26.99 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=48.3
Q ss_pred ceEEEEEEeCCcccCCCccCCc---hHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHH-hhhc---CCCcEEEE
Q 011276 289 EFSVAILTVSDTVASGAGPDRS---GPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRR-WSDI---DKMDLILT 361 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~G~~~D~n---~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~-~~~~---~~~DlVIt 361 (489)
....-|+.+||.+..|.-.... ...+++.|... . .++.+....+-.+....+.+.+.. .+.. ...|+||.
T Consensus 18 ~~~~~i~~lGDSit~g~~~~~~~~~~~~l~~~l~~~--~-~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~~~~pd~vvi 94 (218)
T 1vjg_A 18 KTQIRICFVGDSFVNGTGDPECLGWTGRVCVNANKK--G-YDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVVF 94 (218)
T ss_dssp CEEEEEEEEESHHHHTTTCTTSCHHHHHHHHHHHHT--T-EEEEEEEEECTTCCHHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred CCCceEEEEccccccCCCCCCCCCHHHHHHHHHHhc--C-CCeEEEeCCCCCcCHHHHHHHhHHhhhhhhccCCCCEEEE
Confidence 3556788899999877443222 23455566542 0 055677888888888877777765 3331 26899999
Q ss_pred eCCC
Q 011276 362 LGGT 365 (489)
Q Consensus 362 tGG~ 365 (489)
..|+
T Consensus 95 ~~G~ 98 (218)
T 1vjg_A 95 SFGL 98 (218)
T ss_dssp ECCH
T ss_pred EecC
Confidence 8876
No 139
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=30.99 E-value=41 Score=31.37 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=43.4
Q ss_pred EEEEeCCcccCCCccCC--chHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhc--CCCcEEEEeCCC
Q 011276 293 AILTVSDTVASGAGPDR--SGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDI--DKMDLILTLGGT 365 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~D~--n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~--~~~DlVIttGG~ 365 (489)
-|+.+||.+..|.-... +..| ..|.+. + |+.+...++-.+....+...+.+.+.. ...|+|+...|+
T Consensus 28 ~iv~lGDSiT~G~~~~~~~~~~w--~~l~~~---l-~~~v~N~G~~G~tt~~~~~~~~~~l~~~~~~pd~V~I~~G~ 98 (274)
T 3bzw_A 28 KVGYIGDSITDPNCYGDNIKKYW--DFLKEW---L-GITPFVYGISGRQWDDVPRQAEKLKKEHGGEVDAILVFMGT 98 (274)
T ss_dssp EEEEEESTTTCTTTTGGGCCCHH--HHHHHH---H-CCEEEECCCTTCCGGGHHHHHHHHHHHHTTTCCEEEEECCH
T ss_pred EEEEEecCcccCCCCCCccCccH--HHHHHH---h-CCeEEEeecCCCCHHHHHHHHHHHHhccCCCCCEEEEEEec
Confidence 57889999987754332 2233 344332 1 678888888888865555555554321 378999998876
No 140
>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1
Probab=30.90 E-value=29 Score=33.54 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=33.2
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEee-cCCHHHHHHHHHHHHh--cCCCEEEEeCCCcCCCC
Q 011276 34 RDSNRAMLLAAAMQQHCKLIDLGIV-RDDEEELEKTLDNAFS--AGIDILLTSGGVSMGDK 91 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v-~Dd~~~i~~~l~~~~~--~~~DlvittGG~s~G~~ 91 (489)
.++..+.+..+|.+. +.+.....+ ...-++..+.+.++++ +++|++|.+|.+.....
T Consensus 26 l~~~~p~~~~ll~~~-i~l~~~~sl~~~~g~~a~~~l~~~~~~~~~~DilvVEGsV~~~~~ 85 (283)
T 1cc1_S 26 LNAVHPRIKEILLDV-ISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKE 85 (283)
T ss_dssp HTCBTTBHHHHHHHT-EEEEECTTTCSCCHHHHHHHHHHHHHHTTTSSEEEEESBEECGGG
T ss_pred HhccCCCHHHHHhhc-eeEEeccchhhhcchHHHHHHHHHHhcCCCceEEEEeCCcccCCC
Confidence 355556666666333 445554433 2233445555665532 35899999999987643
No 141
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=30.89 E-value=34 Score=33.09 Aligned_cols=80 Identities=11% Similarity=0.138 Sum_probs=44.8
Q ss_pred eCCeEEEEecCCc-----CcCCCCCCCCCCcE--EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHh-cCCC
Q 011276 7 RTPTIAVLSTGDE-----LVEPTTQCLDRGQI--RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS-AGID 78 (489)
Q Consensus 7 r~prV~iistGdE-----l~~~g~~~~~~g~i--~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~-~~~D 78 (489)
+++||+|+.+|+- |+.......-+.+| .=||.+-+..+.+++|..+..+..-.++.++..+.+.+.++ .+.|
T Consensus 89 ~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~D 168 (286)
T 3n0v_A 89 HRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSNHPDLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAE 168 (286)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCS
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEEeCcHHHHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 4779999999853 22210000002333 23555556677889998776554444454443333333332 2589
Q ss_pred EEEEeCCC
Q 011276 79 ILLTSGGV 86 (489)
Q Consensus 79 lvittGG~ 86 (489)
+||..|=.
T Consensus 169 livla~y~ 176 (286)
T 3n0v_A 169 LVILARYM 176 (286)
T ss_dssp EEEESSCC
T ss_pred EEEecccc
Confidence 99999843
No 142
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=30.79 E-value=63 Score=30.47 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHH-------HHHHHHhcCCCEEEEeC
Q 011276 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEK-------TLDNAFSAGIDILLTSG 84 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~-------~l~~~~~~~~DlvittG 84 (489)
-+..+...|.+.|+++..+.+-++..+.+.+ .+.++++ ++|+||++=
T Consensus 12 mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-~aDvvi~~v 65 (287)
T 3pef_A 12 MGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVE-SCPVTFAML 65 (287)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHH-HCSEEEECC
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHh-cCCEEEEEc
Confidence 3566777778889998877666655555543 3556665 489999865
No 143
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=30.26 E-value=1.1e+02 Score=28.95 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=37.6
Q ss_pred cChHHHHHHHHHhCCCe----E-EEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011276 35 DSNRAMLLAAAMQQHCK----L-IDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~----~-~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
|.-.--+..-|++.|+. + ..+.-...|.....+.+++...++.|+||++|
T Consensus 23 d~~~~G~~~~L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~ 77 (302)
T 3lkv_A 23 DATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIA 77 (302)
T ss_dssp HHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHHHHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEcC
Confidence 45455577788888863 2 33445678889999999998887899999887
No 144
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=29.33 E-value=34 Score=33.22 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=43.9
Q ss_pred eCCeEEEEecCCc-----CcCC---CCCCCCCCcE--EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHh-c
Q 011276 7 RTPTIAVLSTGDE-----LVEP---TTQCLDRGQI--RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS-A 75 (489)
Q Consensus 7 r~prV~iistGdE-----l~~~---g~~~~~~g~i--~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~-~ 75 (489)
+++||+|+.+|.- |+.. |+ + +.+| .=||.+-...+.+++|..+..+..-.++.++..+.+.+.++ .
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~g~--l-~~~i~~Visn~~~~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~ 170 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKMGE--L-KMDIVGIVSNHPDFAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETS 170 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHHTS--S-CCEEEEEEESSSTTHHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHcCC--C-CcEEEEEEeCcHHHHHHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHh
Confidence 4789999999853 2211 11 1 2233 33555556677889998776554444555443333333332 2
Q ss_pred CCCEEEEeCC
Q 011276 76 GIDILLTSGG 85 (489)
Q Consensus 76 ~~DlvittGG 85 (489)
+.|+||..|=
T Consensus 171 ~~Dlivla~y 180 (292)
T 3lou_A 171 GAELVILARY 180 (292)
T ss_dssp TCSEEEESSC
T ss_pred CCCEEEecCc
Confidence 5899999883
No 145
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=29.22 E-value=40 Score=32.44 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=37.9
Q ss_pred cCCCCcceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHH-------HHHHhhhcCC
Q 011276 283 DCSGYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKE-------VLRRWSDIDK 355 (489)
Q Consensus 283 ~~~~~~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~-------~l~~~~~~~~ 355 (489)
.+....+++++||=.|.- |..++..|.+. |++|.-+..-++..+.+.+ .+.+++. +
T Consensus 15 ~~~~~~m~~I~iIG~G~m----------G~~~A~~l~~~-----G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~--~ 77 (310)
T 3doj_A 15 VPRGSHMMEVGFLGLGIM----------GKAMSMNLLKN-----GFKVTVWNRTLSKCDELVEHGASVCESPAEVIK--K 77 (310)
T ss_dssp ---CCCSCEEEEECCSHH----------HHHHHHHHHHT-----TCEEEEECSSGGGGHHHHHTTCEECSSHHHHHH--H
T ss_pred CcccccCCEEEEECccHH----------HHHHHHHHHHC-----CCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHH--h
Confidence 344456789999866542 45677777777 8777655444444444432 2444554 6
Q ss_pred CcEEEEe
Q 011276 356 MDLILTL 362 (489)
Q Consensus 356 ~DlVItt 362 (489)
+|+||++
T Consensus 78 aDvvi~~ 84 (310)
T 3doj_A 78 CKYTIAM 84 (310)
T ss_dssp CSEEEEC
T ss_pred CCEEEEE
Confidence 8888875
No 146
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=29.15 E-value=73 Score=30.17 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=39.4
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHH-------HHHHHHhcCCCEE
Q 011276 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEK-------TLDNAFSAGIDIL 80 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~-------~l~~~~~~~~Dlv 80 (489)
..+|+||-.|. -+..+...|.+.|+++..+.+-++..+.+.+ .+.++++ ++|+|
T Consensus 3 m~~I~iiG~G~------------------mG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aDvv 63 (302)
T 2h78_A 3 MKQIAFIGLGH------------------MGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQ-GADVV 63 (302)
T ss_dssp CCEEEEECCST------------------THHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHT-TCSEE
T ss_pred CCEEEEEeecH------------------HHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCeEcCCHHHHHh-CCCeE
Confidence 35788887762 2456667777788887665443332333322 2345555 58999
Q ss_pred EEeCCCcCCCCCchHHHHH
Q 011276 81 LTSGGVSMGDKDFVKPLLQ 99 (489)
Q Consensus 81 ittGG~s~G~~D~~~~~l~ 99 (489)
|++=. +...+.+++.
T Consensus 64 i~~vp----~~~~~~~v~~ 78 (302)
T 2h78_A 64 ISMLP----ASQHVEGLYL 78 (302)
T ss_dssp EECCS----CHHHHHHHHH
T ss_pred EEECC----CHHHHHHHHc
Confidence 98642 2223555554
No 147
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=29.10 E-value=2.3e+02 Score=25.04 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=56.2
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHH---HHHHHhCCCeEEEEEeec--CCHHHHHHHHHHHHhcCCCEEE
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAML---LAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILL 81 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l---~a~l~~~G~~~~~~~~v~--Dd~~~i~~~l~~~~~~~~Dlvi 81 (489)
.+|+|+||.-|+ |.-+.. ...|+++|+.. +.+++. -.++.+.+.++++.++++++||
T Consensus 5 ~~~~V~IimgS~-----------------SD~~v~~~a~~~l~~~gi~~-ev~V~SaHR~p~~~~~~~~~a~~~g~~ViI 66 (169)
T 3trh_A 5 NKIFVAILMGSD-----------------SDLSTMETAFTELKSLGIPF-EAHILSAHRTPKETVEFVENADNRGCAVFI 66 (169)
T ss_dssp -CCEEEEEESCG-----------------GGHHHHHHHHHHHHHTTCCE-EEEECCTTTSHHHHHHHHHHHHHTTEEEEE
T ss_pred CCCcEEEEECcH-----------------HhHHHHHHHHHHHHHcCCCE-EEEEEcccCCHHHHHHHHHHHHhCCCcEEE
Confidence 468899987652 333433 34688999874 455543 5688888888888766789888
Q ss_pred EeCCCcCCCCCchHHHHHhcCCeEEeeeeec
Q 011276 82 TSGGVSMGDKDFVKPLLQKKGTIYFNKVCMK 112 (489)
Q Consensus 82 ttGG~s~G~~D~~~~~l~~~G~~~f~~v~~k 112 (489)
.-.|.+ -+++-++..+-.+-+=+|.++
T Consensus 67 a~AG~a----a~LpgvvA~~t~~PVIgVP~~ 93 (169)
T 3trh_A 67 AAAGLA----AHLAGTIAAHTLKPVIGVPMA 93 (169)
T ss_dssp EEECSS----CCHHHHHHHTCSSCEEEEECC
T ss_pred EECChh----hhhHHHHHhcCCCCEEEeecC
Confidence 777654 368888887653334455543
No 148
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=29.00 E-value=2.1e+02 Score=25.49 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=56.1
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHH---HHHHHhCCCeEEEEEee--cCCHHHHHHHHHHHHhcCCCEEEE
Q 011276 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAML---LAAAMQQHCKLIDLGIV--RDDEEELEKTLDNAFSAGIDILLT 82 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l---~a~l~~~G~~~~~~~~v--~Dd~~~i~~~l~~~~~~~~Dlvit 82 (489)
+|+|+||.-|+ |.-+.. ...|+++|+.. +.+++ --.++.+.+.++++.++++++||.
T Consensus 12 ~~~V~IimGS~-----------------SD~~v~~~a~~~L~~~Gi~~-ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa 73 (174)
T 3kuu_A 12 GVKIAIVMGSK-----------------SDWATMQFAADVLTTLNVPF-HVEVVSAHRTPDRLFSFAEQAEANGLHVIIA 73 (174)
T ss_dssp CCCEEEEESSG-----------------GGHHHHHHHHHHHHHTTCCE-EEEECCTTTCHHHHHHHHHHTTTTTCSEEEE
T ss_pred CCcEEEEECcH-----------------HHHHHHHHHHHHHHHcCCCE-EEEEEcccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 46888887652 333433 34688999874 45555 356888888888886667899988
Q ss_pred eCCCcCCCCCchHHHHHhcCCeEEeeeeec
Q 011276 83 SGGVSMGDKDFVKPLLQKKGTIYFNKVCMK 112 (489)
Q Consensus 83 tGG~s~G~~D~~~~~l~~~G~~~f~~v~~k 112 (489)
..|.+ -+++-++..+-.+-+=+|.++
T Consensus 74 ~AG~a----a~LpgvvA~~t~~PVIgVP~~ 99 (174)
T 3kuu_A 74 GNGGA----AHLPGMLAAKTLVPVLGVPVQ 99 (174)
T ss_dssp EEESS----CCHHHHHHHTCSSCEEEEEEC
T ss_pred ECChh----hhhHHHHHhccCCCEEEeeCC
Confidence 77654 368888887653334455553
No 149
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=28.90 E-value=2.3e+02 Score=25.36 Aligned_cols=83 Identities=14% Similarity=0.246 Sum_probs=55.0
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHH---HHHHHhCCCeEEEEEee--cCCHHHHHHHHHHHHhcCCCEEEE
Q 011276 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAML---LAAAMQQHCKLIDLGIV--RDDEEELEKTLDNAFSAGIDILLT 82 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l---~a~l~~~G~~~~~~~~v--~Dd~~~i~~~l~~~~~~~~Dlvit 82 (489)
-|.|+||.-|+ |.-+.. ...|+++|+. .+.+++ --.++.+.+.++++.++++++||.
T Consensus 13 ~~~V~IimGS~-----------------SD~~v~~~a~~~L~~~Gi~-~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa 74 (183)
T 1o4v_A 13 VPRVGIIMGSD-----------------SDLPVMKQAAEILEEFGID-YEITIVSAHRTPDRMFEYAKNAEERGIEVIIA 74 (183)
T ss_dssp -CEEEEEESCG-----------------GGHHHHHHHHHHHHHTTCE-EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEE
T ss_pred CCeEEEEeccH-----------------HHHHHHHHHHHHHHHcCCC-eEEEEEcccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 47888887652 333433 4468899987 455565 366888888888886667899987
Q ss_pred eCCCcCCCCCchHHHHHhcCCeEEeeeeec
Q 011276 83 SGGVSMGDKDFVKPLLQKKGTIYFNKVCMK 112 (489)
Q Consensus 83 tGG~s~G~~D~~~~~l~~~G~~~f~~v~~k 112 (489)
..|.+ -.++-++..+-..-+=+|.+.
T Consensus 75 ~AG~a----a~LpgvvA~~t~~PVIgVP~~ 100 (183)
T 1o4v_A 75 GAGGA----AHLPGMVASITHLPVIGVPVK 100 (183)
T ss_dssp EEESS----CCHHHHHHHHCSSCEEEEEEC
T ss_pred ecCcc----cccHHHHHhccCCCEEEeeCC
Confidence 77654 368888887643333344443
No 150
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=28.82 E-value=67 Score=27.99 Aligned_cols=44 Identities=16% Similarity=0.420 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcCCeEEee
Q 011276 61 DEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNK 108 (489)
Q Consensus 61 d~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G~~~f~~ 108 (489)
..+.+++.+++.++.++|+||+.+|+ .|+....|.+.|-..+++
T Consensus 57 E~~~l~~~v~kI~~~g~nVVl~~k~I----~d~a~~~l~k~gI~~v~~ 100 (159)
T 1ass_A 57 ETNTFKQMVEKIKKSGANVVLCQKGI----DDVAQHYLAKEGIYAVRR 100 (159)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEESSCB----CHHHHHHHHHTTCEEECS
T ss_pred HHHHHHHHhhhhhhCCCeEEEECCcc----CHHHHHHHHHCCCEEEcc
Confidence 34667888888877789999999988 688888888876444433
No 151
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=28.81 E-value=3.4e+02 Score=27.14 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=39.3
Q ss_pred HHHHHhhhcCCCcEEEEeCCC-C-CCCCCChHHHHHHhhccccccHHHHHHhcccccCCCccc--ccc-ceeEECCEEEE
Q 011276 345 EVLRRWSDIDKMDLILTLGGT-G-FTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAML--SRS-AAGIRGSTLII 419 (489)
Q Consensus 345 ~~l~~~~~~~~~DlVIttGG~-G-~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l--~r~-~~g~~~~~~v~ 419 (489)
+.+.+++. ++|+||++=.+ | .++.=+|.+.++.+-.-. ..--+++.+|..+ +|. ..-..++..++
T Consensus 257 ~~l~e~l~--~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGs--------VIVDvA~d~GG~~e~t~~~~~~~~~gV~~~ 326 (381)
T 3p2y_A 257 QALEDAIT--KFDIVITTALVPGRPAPRLVTAAAATGMQPGS--------VVVDLAGETGGNCELTEPGRTIVHHGVTIT 326 (381)
T ss_dssp HHHHHHHT--TCSEEEECCCCTTSCCCCCBCHHHHHTSCTTC--------EEEETTGGGTCSBTTCCTTCEEEETTEEEE
T ss_pred HHHHHHHh--cCCEEEECCCCCCcccceeecHHHHhcCCCCc--------EEEEEeCCCCCccccccCCCeEEECCEEEE
Confidence 35666766 89999987322 1 233346777777653110 0011222333222 111 12345788899
Q ss_pred EcCCCHHHHH
Q 011276 420 NMPGNPNAVA 429 (489)
Q Consensus 420 ~LPG~P~a~~ 429 (489)
+.|..|.++-
T Consensus 327 ~v~nlP~~vp 336 (381)
T 3p2y_A 327 SPLNLPATMP 336 (381)
T ss_dssp CCSCTGGGSH
T ss_pred eeCCCchhhH
Confidence 9888886543
No 152
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=28.58 E-value=4.2e+02 Score=25.78 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHH--------------HHHHHHhcCCCEEEEeCCCcCCCCC--chHHHHHh
Q 011276 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEK--------------TLDNAFSAGIDILLTSGGVSMGDKD--FVKPLLQK 100 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~--------------~l~~~~~~~~DlvittGG~s~G~~D--~~~~~l~~ 100 (489)
-+..+...++..|++++....-++..+.+++ .+.+.+. ++|+||.+-|....... +..+.++.
T Consensus 178 vG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~DvVI~~~~~~~~~~~~li~~~~~~~ 256 (361)
T 1pjc_A 178 VGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVA-EADLLIGAVLVPGRRAPILVPASLVEQ 256 (361)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHH-TCSEEEECCCCTTSSCCCCBCHHHHTT
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHc-CCCEEEECCCcCCCCCCeecCHHHHhh
Confidence 4566777788889877665544333333322 2233344 59999987665443222 35666666
Q ss_pred cC-CeEEeeeeecCCC
Q 011276 101 KG-TIYFNKVCMKPGK 115 (489)
Q Consensus 101 ~G-~~~f~~v~~kPGk 115 (489)
+. .-.+-.+...||.
T Consensus 257 ~~~g~~ivdv~~~~gg 272 (361)
T 1pjc_A 257 MRTGSVIVDVAVDQGG 272 (361)
T ss_dssp SCTTCEEEETTCTTCC
T ss_pred CCCCCEEEEEecCCCC
Confidence 54 3344455666664
No 153
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=28.37 E-value=66 Score=31.07 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=35.7
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHH-------HHHHHHhcCCCEEE
Q 011276 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEK-------TLDNAFSAGIDILL 81 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~-------~l~~~~~~~~Dlvi 81 (489)
.+|+||-.|. -+..++..|.+.|++|..+.+-++..+.+.+ .+.++++ ++|+||
T Consensus 32 ~~I~iIG~G~------------------mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~-~aDvVi 92 (320)
T 4dll_A 32 RKITFLGTGS------------------MGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAAR-DADIVV 92 (320)
T ss_dssp SEEEEECCTT------------------THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHT-TCSEEE
T ss_pred CEEEEECccH------------------HHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHh-cCCEEE
Confidence 4788887762 3456677777889888765443333333321 2445555 589999
Q ss_pred EeCC
Q 011276 82 TSGG 85 (489)
Q Consensus 82 ttGG 85 (489)
++=.
T Consensus 93 ~~vp 96 (320)
T 4dll_A 93 SMLE 96 (320)
T ss_dssp ECCS
T ss_pred EECC
Confidence 8753
No 154
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=28.21 E-value=39 Score=28.65 Aligned_cols=40 Identities=15% Similarity=0.424 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhcCCCcEEEEeCCCCC--CCC-CChHHHHHHh
Q 011276 341 GKIKEVLRRWSDIDKMDLILTLGGTGF--TPR-DVTPEATKEL 380 (489)
Q Consensus 341 ~~I~~~l~~~~~~~~~DlVIttGG~G~--t~~-D~T~eav~~~ 380 (489)
+.|.++|+......++|+|+-.+++=. ... |+|.+++..+
T Consensus 100 ~~i~~ai~~vak~~gy~~Vld~~~vly~~~~~~DIT~~Vi~~L 142 (143)
T 1u2m_A 100 TRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV 142 (143)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEGGGEEEECTTSCBCHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCeEEEECCceeEeCCCcCchHHHHHHHh
Confidence 456777777777789999998765422 345 9999999865
No 155
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=28.10 E-value=1.6e+02 Score=30.73 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=37.7
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011276 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
.++|+|+-.| +.+...+...+++.|+.+..+.. ..+.+.+. +. +.|-||.+||-+
T Consensus 7 ~~~IlIlD~g-----------------~~~~~~i~r~lr~~G~~~~i~p~-~~~~~~i~----~~---~~dgiILsGGp~ 61 (525)
T 1gpm_A 7 KHRILILDFG-----------------SQYTQLVARRVRELGVYCELWAW-DVTEAQIR----DF---NPSGIILSGGPE 61 (525)
T ss_dssp SSEEEEEECS-----------------CTTHHHHHHHHHHTTCEEEEEES-CCCHHHHH----HH---CCSEEEECCCSS
T ss_pred CCEEEEEECC-----------------CccHHHHHHHHHHCCCEEEEEEC-CCCHHHHh----cc---CCCEEEECCcCc
Confidence 3577777655 35668899999999998765432 23454443 22 379999999864
No 156
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=27.96 E-value=3.6e+02 Score=24.77 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=52.9
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEc--CC-------CHHHHHHHHHHhh-hcCCCcEE
Q 011276 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVV--PD-------DVGKIKEVLRRWS-DIDKMDLI 359 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v--~D-------d~~~I~~~l~~~~-~~~~~DlV 359 (489)
-|++|+++-. +.-...+.+.|++. |+++...... .| +++.+.+.+++++ +..++|.|
T Consensus 118 ~rvglltpy~--------~~~~~~~~~~l~~~-----Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adai 184 (240)
T 3ixl_A 118 RRVALATAYI--------DDVNERLAAFLAEE-----SLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGI 184 (240)
T ss_dssp SEEEEEESSC--------HHHHHHHHHHHHHT-----TCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEE
T ss_pred CEEEEEeCCh--------HHHHHHHHHHHHHC-----CCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEE
Confidence 4899998621 11124566788888 9998876643 23 5678888888833 44689999
Q ss_pred EEeCCCCCCCCCChHHHHHHhhcccc
Q 011276 360 LTLGGTGFTPRDVTPEATKELIERET 385 (489)
Q Consensus 360 IttGG~G~t~~D~T~eav~~~~~~~l 385 (489)
|.. .|....-+ ..+.+++..++++
T Consensus 185 vL~-CT~l~~l~-~i~~le~~lg~PV 208 (240)
T 3ixl_A 185 LLS-SGGLLTLD-AIPEVERRLGVPV 208 (240)
T ss_dssp EEE-CTTSCCTT-HHHHHHHHHSSCE
T ss_pred EEe-CCCCchhh-hHHHHHHHhCCCE
Confidence 986 57766555 3345555556554
No 157
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=27.87 E-value=98 Score=30.87 Aligned_cols=50 Identities=14% Similarity=0.003 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCeEEEEEee-c-CCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011276 39 AMLLAAAMQQHCKLIDLGIV-R-DDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v-~-Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
.-+.+.|++.|+++..+.-+ + -+.+.+.+.++.+.+.++|+||--||=|+
T Consensus 49 ~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 100 (383)
T 3ox4_A 49 KQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGSP 100 (383)
T ss_dssp HHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcHH
Confidence 34566788889888666544 2 34566777777766667999999988765
No 158
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=27.83 E-value=2.3e+02 Score=25.12 Aligned_cols=84 Identities=17% Similarity=0.226 Sum_probs=55.9
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHH---HHHHHhCCCeEEEEEeec--CCHHHHHHHHHHHHhcCCCEEE
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAML---LAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILL 81 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l---~a~l~~~G~~~~~~~~v~--Dd~~~i~~~l~~~~~~~~Dlvi 81 (489)
..|+|+||.-| +|.-+.. ...|+++|+.. +.+++. -.++.+.+..+++.++++++||
T Consensus 11 ~~P~V~IimGS-----------------~SD~~v~~~a~~~l~~~gi~~-ev~V~saHR~p~~l~~~~~~a~~~g~~ViI 72 (173)
T 4grd_A 11 SAPLVGVLMGS-----------------SSDWDVMKHAVAILQEFGVPY-EAKVVSAHRMPDEMFDYAEKARERGLRAII 72 (173)
T ss_dssp SSCSEEEEESS-----------------GGGHHHHHHHHHHHHHTTCCE-EEEECCTTTSHHHHHHHHHHHTTTTCSEEE
T ss_pred CCCeEEEEeCc-----------------HhHHHHHHHHHHHHHHcCCCE-EEEEEccccCHHHHHHHHHHHHhcCCeEEE
Confidence 56889988754 2443443 34688999874 455553 5678888888888766789888
Q ss_pred EeCCCcCCCCCchHHHHHhcCCeEEeeeeec
Q 011276 82 TSGGVSMGDKDFVKPLLQKKGTIYFNKVCMK 112 (489)
Q Consensus 82 ttGG~s~G~~D~~~~~l~~~G~~~f~~v~~k 112 (489)
..-|.+ -+++-++..+-.+-+=+|.++
T Consensus 73 a~AG~a----ahLpgvvA~~t~~PVIgVPv~ 99 (173)
T 4grd_A 73 AGAGGA----AHLPGMLAAKTTVPVLGVPVA 99 (173)
T ss_dssp EEEESS----CCHHHHHHHHCCSCEEEEEEC
T ss_pred Eecccc----ccchhhheecCCCCEEEEEcC
Confidence 665443 368888887654444455554
No 159
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=27.81 E-value=2.1e+02 Score=26.94 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHH---------HHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC-CeEE
Q 011276 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELE---------KTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYF 106 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~---------~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G-~~~f 106 (489)
-+..+...++.+|+++..+..-++..+.+. +.+.+.+. ++|+|+.+=..+ -+..+.++.+. .-++
T Consensus 166 iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~-~aDvVi~~~p~~----~i~~~~l~~mk~~~~l 240 (293)
T 3d4o_A 166 VGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELR-DVDVCINTIPAL----VVTANVLAEMPSHTFV 240 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTT-TCSEEEECCSSC----CBCHHHHHHSCTTCEE
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhc-CCCEEEECCChH----HhCHHHHHhcCCCCEE
Confidence 456777788888988776654433222222 13555565 599999875432 22245566554 3334
Q ss_pred eeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHH-HHHHHHH
Q 011276 107 NKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSC-IVCFHLY 154 (489)
Q Consensus 107 ~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa-~~~~~~~ 154 (489)
=.++..|+.- -+.... ..+..++.+||-|... ......+
T Consensus 241 in~ar~~~~~-~~~~a~--------~~Gv~~~~~~~l~~~v~p~~a~~~ 280 (293)
T 3d4o_A 241 IDLASKPGGT-DFRYAE--------KRGIKALLVPGLPGIVAPKTAGRI 280 (293)
T ss_dssp EECSSTTCSB-CHHHHH--------HHTCEEEECCCHHHHHCHHHHHHH
T ss_pred EEecCCCCCC-CHHHHH--------HCCCEEEECCCCCcccCHHHHHHH
Confidence 4444444431 121111 1235677889998877 4443333
No 160
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=27.76 E-value=90 Score=28.68 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=38.8
Q ss_pred HHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC---CCCC-------hHHHHHHhh
Q 011276 312 PRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT---PRDV-------TPEATKELI 381 (489)
Q Consensus 312 ~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t---~~D~-------T~eav~~~~ 381 (489)
-.+..++.+. |+++..+.+...+. +-.-++ ++|.||.+||-+.- .+|. ..+.+.++.
T Consensus 15 g~~~~~l~~~-----g~~~~~~~~~~~~~------~p~~~~--~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~ 81 (236)
T 3l7n_A 15 GAYLAWAALR-----GHDVSMTKVYRYEK------LPKDID--DFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAA 81 (236)
T ss_dssp HHHHHHHHHT-----TCEEEEEEGGGTCC------CCSCGG--GCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHC-----CCeEEEEeeeCCCC------CCCCcc--ccCEEEECCCCCCcccccccCcccchHHHHHHHHHHH
Confidence 4677888888 99998877754431 111123 69999999998752 2221 345666655
Q ss_pred ccccc
Q 011276 382 ERETP 386 (489)
Q Consensus 382 ~~~l~ 386 (489)
+...|
T Consensus 82 ~~~~P 86 (236)
T 3l7n_A 82 KSEKI 86 (236)
T ss_dssp HTTCE
T ss_pred HcCCC
Confidence 44333
No 161
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=27.69 E-value=99 Score=28.97 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=34.0
Q ss_pred HHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 41 LLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 41 l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
+...+++.|+++.....-.+|.+.-.+.++.++.+++|.||..+..
T Consensus 22 i~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 67 (313)
T 2h3h_A 22 VKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSD 67 (313)
T ss_dssp HHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred HHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4556778899877554335678887888888877679999987654
No 162
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=27.67 E-value=77 Score=28.78 Aligned_cols=49 Identities=16% Similarity=0.032 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCeEEEEEe-ecCCHHHHHHHHHHHHhcC-CCEEEEeCCC
Q 011276 38 RAMLLAAAMQQHCKLIDLGI-VRDDEEELEKTLDNAFSAG-IDILLTSGGV 86 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~-v~Dd~~~i~~~l~~~~~~~-~DlvittGG~ 86 (489)
-.-+...+++.|+++..... -.+|.+.-.+.++.+++++ +|-||+.+-.
T Consensus 19 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~ 69 (276)
T 3ksm_A 19 YLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNS 69 (276)
T ss_dssp HHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSS
T ss_pred HHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 34456678888998875543 3467888888888888777 9999998753
No 163
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=27.66 E-value=4e+02 Score=26.54 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCEEEEeCCC-cCCC-CCchHHHHHhcC-CeEEeeeeecCCC
Q 011276 68 TLDNAFSAGIDILLTSGGV-SMGD-KDFVKPLLQKKG-TIYFNKVCMKPGK 115 (489)
Q Consensus 68 ~l~~~~~~~~DlvittGG~-s~G~-~D~~~~~l~~~G-~~~f~~v~~kPGk 115 (489)
.+.+.+. ++|+||.+=++ +... .=++.+.++.+. .-.+-.+++-+|.
T Consensus 248 ~l~e~~~-~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg 297 (401)
T 1x13_A 248 LFAAQAK-EVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGG 297 (401)
T ss_dssp HHHHHHH-HCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTC
T ss_pred HHHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCC
Confidence 3566665 49999988433 2112 224577888775 3344445544444
No 164
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=27.33 E-value=54 Score=26.81 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=27.6
Q ss_pred CcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCC
Q 011276 327 GAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGT 365 (489)
Q Consensus 327 G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~ 365 (489)
|+++. .+ .+.+++.++++++++..++.+|+.|=.+
T Consensus 22 Gi~~~---~v-~~~ee~~~~~~~l~~~~digIIlIte~~ 56 (109)
T 2d00_A 22 GLEGY---GA-SSAEEAQSLLETLVERGGYALVAVDEAL 56 (109)
T ss_dssp TSEEE---EC-SSHHHHHHHHHHHHHHCCCSEEEEETTT
T ss_pred CCeEE---Ee-CCHHHHHHHHHHHhhCCCeEEEEEeHHH
Confidence 88652 33 7889999999999986689999998643
No 165
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=27.31 E-value=79 Score=30.30 Aligned_cols=59 Identities=8% Similarity=0.032 Sum_probs=40.3
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHH-------HHHHHHhcCCCE
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEK-------TLDNAFSAGIDI 79 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~-------~l~~~~~~~~Dl 79 (489)
+..+|+||-.| .-+..++..|.+.|+++..+.+-++..+.+.+ .+.++++ ++|+
T Consensus 20 ~m~~I~iIG~G------------------~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~-~aDv 80 (310)
T 3doj_A 20 HMMEVGFLGLG------------------IMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIK-KCKY 80 (310)
T ss_dssp CSCEEEEECCS------------------HHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHH-HCSE
T ss_pred cCCEEEEECcc------------------HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHH-hCCE
Confidence 44678888766 23566777788889988877666655555543 3555665 4899
Q ss_pred EEEeC
Q 011276 80 LLTSG 84 (489)
Q Consensus 80 vittG 84 (489)
||++=
T Consensus 81 vi~~v 85 (310)
T 3doj_A 81 TIAML 85 (310)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 99865
No 166
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=27.31 E-value=3e+02 Score=24.52 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC-CeEE
Q 011276 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYF 106 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G-~~~f 106 (489)
..+...+++.|+++..+ ...+|.+...+.++.++++++|-||..+.... ..+.+. .+.+.| .+++
T Consensus 22 ~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~-~~~~~~iPvV~ 87 (272)
T 3o74_A 22 KQLEQGARARGYQLLIA-SSDDQPDSERQLQQLFRARRCDALFVASCLPP-EDDSYR-ELQDKGLPVIA 87 (272)
T ss_dssp HHHHHHHHHTTCEEEEE-ECTTCHHHHHHHHHHHHHTTCSEEEECCCCCS-SCCHHH-HHHHTTCCEEE
T ss_pred HHHHHHHHHCCCEEEEE-eCCCCHHHHHHHHHHHHHcCCCEEEEecCccc-cHHHHH-HHHHcCCCEEE
Confidence 34556788899998765 45677888888888887767999999875533 244443 444455 4444
No 167
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=27.24 E-value=91 Score=31.36 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=32.6
Q ss_pred HHHHHHHHhCCCeEEEEEe-ecC-CHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011276 39 AMLLAAAMQQHCKLIDLGI-VRD-DEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~-v~D-d~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
.-+.+.|++.|+++..+.- .++ +.+.+.+.++.+.+.++|+||-.||=|+
T Consensus 62 ~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 113 (407)
T 1vlj_A 62 DQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSV 113 (407)
T ss_dssp HHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHH
T ss_pred HHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChhH
Confidence 3455667777887755543 222 4566777777766667899998777554
No 168
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=27.22 E-value=4.2e+02 Score=25.83 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHH--------------HHHHHHHhcCCCEEEEeCCCcC--CCCCchHHHHHh
Q 011276 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELE--------------KTLDNAFSAGIDILLTSGGVSM--GDKDFVKPLLQK 100 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~--------------~~l~~~~~~~~DlvittGG~s~--G~~D~~~~~l~~ 100 (489)
-|..+...++..|++++.+..-++..+.+. +.+.+++. ++|+||.+-|... ...=++.++++.
T Consensus 177 iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~-~~DvVi~~~g~~~~~~~~li~~~~l~~ 255 (369)
T 2eez_A 177 VGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQ-HADLLIGAVLVPGAKAPKLVTRDMLSL 255 (369)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHH-HCSEEEECCC-------CCSCHHHHTT
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHh-CCCEEEECCCCCccccchhHHHHHHHh
Confidence 456677778888887766654433322222 22444555 4999998877542 223335677766
Q ss_pred cC
Q 011276 101 KG 102 (489)
Q Consensus 101 ~G 102 (489)
+-
T Consensus 256 mk 257 (369)
T 2eez_A 256 MK 257 (369)
T ss_dssp SC
T ss_pred hc
Confidence 53
No 169
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=27.10 E-value=56 Score=27.63 Aligned_cols=38 Identities=16% Similarity=0.373 Sum_probs=26.0
Q ss_pred HHHHHHHHHh-cCCCEEEEeCCCcC--CCC-CchHHHHHhcC
Q 011276 65 LEKTLDNAFS-AGIDILLTSGGVSM--GDK-DFVKPLLQKKG 102 (489)
Q Consensus 65 i~~~l~~~~~-~~~DlvittGG~s~--G~~-D~~~~~l~~~G 102 (489)
|..++++... +++|+|+-.+++=. +.. |.|.++++.|+
T Consensus 102 i~~ai~~vak~~gy~~Vld~~~vly~~~~~~DIT~~Vi~~Ln 143 (143)
T 1u2m_A 102 IQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK 143 (143)
T ss_dssp HHHHHHHHHHHTTCSEEEEGGGEEEECTTSCBCHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCeEEEECCceeEeCCCcCchHHHHHHHhC
Confidence 4444444332 58999998776432 456 99999998874
No 170
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=27.03 E-value=27 Score=30.76 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=49.6
Q ss_pred HHHhCC-C--eEEEEEeecCCHHHHHHHHHHHHh-cCCCEEEEeCCCcC---CCCCchHHHHHhcCCeEEeeeeecCCCc
Q 011276 44 AAMQQH-C--KLIDLGIVRDDEEELEKTLDNAFS-AGIDILLTSGGVSM---GDKDFVKPLLQKKGTIYFNKVCMKPGKP 116 (489)
Q Consensus 44 ~l~~~G-~--~~~~~~~v~Dd~~~i~~~l~~~~~-~~~DlvittGG~s~---G~~D~~~~~l~~~G~~~f~~v~~kPGkp 116 (489)
.|++.| + +-+..-.||-..|. --+.+++++ .++|.||+.|=+=- ..+||+.....+- .-.++++=|.|
T Consensus 37 ~l~~~G~v~~~~i~v~~VPGafEi-P~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~G----l~~v~L~~~vP 111 (156)
T 3nq4_A 37 ALTRIGQVKDDNITVVWVPGAYEL-PLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNG----LASVAQDSGVP 111 (156)
T ss_dssp HHHHTTCCCTTSEEEEEESSTTTH-HHHHHHHHHHCSCSEEEEEEEEECCSSTHHHHHHHHHHHH----HHHHHHHHCCC
T ss_pred HHHHcCCCcccceEEEEcCcHHHH-HHHHHHHHhcCCCCEEEEeeeeecCCchHHHHHHHHHHHH----HHHHHhccCCC
Confidence 466778 5 33455678877653 333344332 35999999998833 3467777776652 34677888899
Q ss_pred eeeEEEc
Q 011276 117 LTFAEIN 123 (489)
Q Consensus 117 ~~~a~~~ 123 (489)
+.+|.+.
T Consensus 112 V~~GVLT 118 (156)
T 3nq4_A 112 VAFGVLT 118 (156)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 9999885
No 171
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=26.74 E-value=78 Score=30.82 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011276 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
..+..+|++.|+++.....-. +....+..+++..+++|+||+.||=|. +.+++..+
T Consensus 45 ~~i~~~L~~~g~~~~~~~t~~--~~~a~~~~~~~~~~~~d~vvv~GGDGT-----v~~v~~~l 100 (337)
T 2qv7_A 45 PDALIKLEKAGYETSAYATEK--IGDATLEAERAMHENYDVLIAAGGDGT-----LNEVVNGI 100 (337)
T ss_dssp HHHHHHHHHTTEEEEEEECCS--TTHHHHHHHHHTTTTCSEEEEEECHHH-----HHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEEecC--cchHHHHHHHHhhcCCCEEEEEcCchH-----HHHHHHHH
Confidence 467888999998876544332 222334444554446899999999774 77777766
No 172
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=26.68 E-value=29 Score=30.61 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHhcC---CCEEEEeCCCcCCCCCchHHHHHhcC-CeEEeeee
Q 011276 59 RDDEEELEKTLDNAFSAG---IDILLTSGGVSMGDKDFVKPLLQKKG-TIYFNKVC 110 (489)
Q Consensus 59 ~Dd~~~i~~~l~~~~~~~---~DlvittGG~s~G~~D~~~~~l~~~G-~~~f~~v~ 110 (489)
+||..++++.|.+=.. . .|+|++=||- |.-....++|+++| .+-+-+++
T Consensus 60 ~DDya~M~Evl~RR~~-r~~~PDLilIDGGk--gQl~aA~~vl~elg~~i~v~glA 112 (159)
T 2nrr_A 60 PDDYESIRTVVKRRYS-KHPLPNLLFVDGGI--GQVNAAIEALKEIGKDCPVVGLA 112 (159)
T ss_dssp -CHHHHHHHHHHHHHT-TSCCCSEEEESSCH--HHHHHHHHHHHHTTCCCCEEEEC
T ss_pred CCHHHHHHHHHHHHhc-cCCCCCEEEEeCCH--HHHHHHHHHHHHcCCCccEEEEE
No 173
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=26.64 E-value=2.9e+02 Score=25.47 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=39.0
Q ss_pred HHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhcc
Q 011276 314 AVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIER 383 (489)
Q Consensus 314 l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~ 383 (489)
+.+.+++. |+++.... ..+|.+.-.+.++.++. .++|-||+.+.. .+-..+.+.++.+.
T Consensus 24 i~~~a~~~-----g~~~~~~~-~~~~~~~~~~~i~~l~~-~~vdgiIi~~~~----~~~~~~~~~~~~~~ 82 (313)
T 3m9w_A 24 FVKKAESL-----GAKVFVQS-ANGNEETQMSQIENMIN-RGVDVLVIIPYN----GQVLSNVVKEAKQE 82 (313)
T ss_dssp HHHHHHHT-----SCEEEEEE-CTTCHHHHHHHHHHHHH-TTCSEEEEECSS----TTSCHHHHHHHHTT
T ss_pred HHHHHHHc-----CCEEEEEC-CCCCHHHHHHHHHHHHH-cCCCEEEEeCCC----hhhhHHHHHHHHHC
Confidence 44556666 99887654 47777777888888876 589999987632 22334556655443
No 174
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=26.40 E-value=96 Score=29.63 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=36.2
Q ss_pred ceEEEEEE-eCCcccCCCccC-CchH----HHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEe
Q 011276 289 EFSVAILT-VSDTVASGAGPD-RSGP----RAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTL 362 (489)
Q Consensus 289 ~~~v~Ii~-~GdEi~~G~~~D-~n~~----~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVItt 362 (489)
..++++|. +|+ +.| ..-. -+.+.+++. |+++...... ++ ++..+.++.+.+ +++|.||++
T Consensus 4 ~~~Ig~v~~~g~------~~d~~f~~~~~~Gi~~~~~~~-----g~~~~~~~~~-~~-~~~~~~l~~l~~-~~~dgIi~~ 69 (318)
T 2fqx_A 4 DFVVGMVTDSGD------IDDKSFNQQVWEGISRFAQEN-----NAKCKYVTAS-TD-AEYVPSLSAFAD-ENMGLVVAC 69 (318)
T ss_dssp CCEEEEEESSSC------TTSSSHHHHHHHHHHHHHHHT-----TCEEEEEECC-SG-GGHHHHHHHHHH-TTCSEEEEE
T ss_pred CcEEEEEEcCCC------CCCccHHHHHHHHHHHHHHHh-----CCeEEEEeCC-CH-HHHHHHHHHHHH-cCCCEEEEC
Confidence 36788887 343 223 1111 222345555 9887765543 33 334567887775 589999998
Q ss_pred C
Q 011276 363 G 363 (489)
Q Consensus 363 G 363 (489)
|
T Consensus 70 ~ 70 (318)
T 2fqx_A 70 G 70 (318)
T ss_dssp S
T ss_pred C
Confidence 6
No 175
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=26.26 E-value=85 Score=30.56 Aligned_cols=65 Identities=11% Similarity=0.004 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHH-----HHHHHHHHhcCCCEEEEeCCCcCCCCCch-HHHHHhc
Q 011276 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEEL-----EKTLDNAFSAGIDILLTSGGVSMGDKDFV-KPLLQKK 101 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i-----~~~l~~~~~~~~DlvittGG~s~G~~D~~-~~~l~~~ 101 (489)
.-|..++..++.+|+++..+..-+...+.+ ...+.+++. ++|+|++.=-.....+.++ .+.++.+
T Consensus 149 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~-~aDiV~l~~Plt~~t~~li~~~~l~~m 219 (315)
T 3pp8_A 149 VLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLN-QTRVLINLLPNTAQTVGIINSELLDQL 219 (315)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHH-TCSEEEECCCCCGGGTTCBSHHHHTTS
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHh-hCCEEEEecCCchhhhhhccHHHHhhC
Confidence 457788899999999999887654432211 145667776 4999998765444444554 4555544
No 176
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=25.81 E-value=24 Score=32.24 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=33.9
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011276 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
.|||.++-.|+ ++...+..+|++.|+++..+ +.+. ... .+. ++|.||.+||
T Consensus 13 ~~~i~~id~~~-----------------~~~~~~~~~l~~~G~~~~vv---~~~~-----~~~-~l~-~~DglIl~GG 63 (212)
T 2a9v_A 13 MLKIYVVDNGG-----------------QWTHREWRVLRELGVDTKIV---PNDI-----DSS-ELD-GLDGLVLSGG 63 (212)
T ss_dssp CCBEEEEEESC-----------------CTTCHHHHHHHHTTCBCCEE---ETTS-----CGG-GGT-TCSEEEEEEE
T ss_pred cceEEEEeCCC-----------------ccHHHHHHHHHHCCCEEEEE---eCCC-----CHH-HHh-CCCEEEECCC
Confidence 46777777664 44567889999999987643 3221 111 223 3899999999
No 177
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=25.74 E-value=86 Score=28.87 Aligned_cols=80 Identities=18% Similarity=0.287 Sum_probs=53.6
Q ss_pred EEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCC
Q 011276 293 AILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDV 372 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~ 372 (489)
-|+.||-+=..|...|. ++.+++.|... +.|+++. ...+|-+.+...+.+.++++..+.|+||..|=.| +..++
T Consensus 5 ~VLvTGF~PF~~~~~NP-S~~~v~~L~~~---i~~~~i~-~~~lPv~~~~~~~~l~~~i~~~~Pd~Vi~vG~a~-gr~~i 78 (215)
T 3giu_A 5 HILVTGFAPFDNQNINP-SWEAVTQLEDI---IGTHTID-KLKLPTSFKKVDNIINKTLASNHYDVVLAIGQAG-GRNAI 78 (215)
T ss_dssp EEEEEEECCCTTCSCCH-HHHHHHHSCSE---ETTEEEE-EEEECSCHHHHHHHHHHHHHHSCCSEEEEEEECT-TCCSB
T ss_pred EEEEEecCCCCCCCCCh-HHHHHHHhccc---cCCcEEE-EEEeceehHhHHHHHHHHHHHhCCCEEEEeccCC-CCceE
Confidence 36778877665544333 33445555543 3466554 5589999999899998887767899999987444 45567
Q ss_pred hHHHHH
Q 011276 373 TPEATK 378 (489)
Q Consensus 373 T~eav~ 378 (489)
+.|-++
T Consensus 79 ~lEr~A 84 (215)
T 3giu_A 79 TPERVA 84 (215)
T ss_dssp EEBCEE
T ss_pred EEEEEE
Confidence 776553
No 178
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=25.72 E-value=1.6e+02 Score=26.95 Aligned_cols=67 Identities=6% Similarity=0.037 Sum_probs=43.8
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
+..+|+++.... .. .-+..--.-+...+++.|+++... ...+|.+...+.++.++++++|-||+.+.
T Consensus 7 ~~~~Ig~i~~~~-----~~------~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (293)
T 3l6u_A 7 KRNIVGFTIVND-----KH------EFAQRLINAFKAEAKANKYEALVA-TSQNSRISEREQILEFVHLKVDAIFITTL 73 (293)
T ss_dssp --CEEEEEESCS-----CS------HHHHHHHHHHHHHHHHTTCEEEEE-ECSSCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCcEEEEEEecC-----Cc------HHHHHHHHHHHHHHHHcCCEEEEE-CCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 556788887431 00 111222334566788999998765 45677888888888887777999999864
No 179
>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S*
Probab=25.69 E-value=61 Score=32.07 Aligned_cols=128 Identities=13% Similarity=0.034 Sum_probs=63.8
Q ss_pred ccCCchHHHHHHHHccccccCCcEEEEEEEcCCCH-HHHHHHHHHhhhc-CCCcEEEEeCCCCCCCCC--------ChHH
Q 011276 306 GPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDV-GKIKEVLRRWSDI-DKMDLILTLGGTGFTPRD--------VTPE 375 (489)
Q Consensus 306 ~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~-~~I~~~l~~~~~~-~~~DlVIttGG~G~t~~D--------~T~e 375 (489)
..|...+.+.+++.+ .+++.+...+.+.. +...+.+++.++. .+.|++|.+|.+....+. -..+
T Consensus 24 lL~~~~P~l~~lll~------~I~L~yhptlm~~~G~~ae~~l~~~~~~~~~~dILlVeGsV~~~~~G~y~~~gg~~~l~ 97 (335)
T 3uqy_S 24 FIRSAHPLAKDVILS------LISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIE 97 (335)
T ss_dssp HHTCBTTBHHHHHHH------TEEEEEETTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBCBCGGGGTTBEETTEEHHH
T ss_pred HHCCCCCCHHHHHhc------CceEeechhhhhhhhHHHHHHHHHHHhcCCCCeEEEEeccCCCCCCcceeccCCcHHHH
Confidence 346666777776655 46788877776653 3333444444321 378999999998653220 1133
Q ss_pred HHHHhhccc--cccHHHHHHhccc-ccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHH
Q 011276 376 ATKELIERE--TPGLLYVMMQESL-KVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 439 (489)
Q Consensus 376 av~~~~~~~--l~g~~e~~~~~~~-~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l 439 (489)
.+.++..+. +--+..--.+=|+ +..+...-..++--++.+++++.+||.|-.-...++.++.+|
T Consensus 98 ~l~e~~~~ak~VIAvGsCA~~GGi~a~~~npt~~~gv~~vi~~~~di~IPGCPP~Pe~i~~~l~~ll 164 (335)
T 3uqy_S 98 KLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMV 164 (335)
T ss_dssp HHHHHHHHEEEEEEEHHHHHTCHHHHSTTCTTCBCCGGGTCCSSCEEEECSSSCCHHHHHHHHHHHH
T ss_pred HHHHHccCCCEEEEeccccccCCccCCCCCcccCcCHHHhCCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 333332221 0000000000011 011110000011112334578999999998888888776544
No 180
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=25.69 E-value=1.1e+02 Score=28.69 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011276 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
-+...+++.|+++...... ++.+...+.++.++++++|.||++|
T Consensus 28 gi~~~~~~~g~~~~~~~~~-~~~~~~~~~l~~l~~~~vdgIi~~~ 71 (296)
T 2hqb_A 28 GLLNIHSNLDVDVVLEEGV-NSEQKAHRRIKELVDGGVNLIFGHG 71 (296)
T ss_dssp HHHHHHHHSCCEEEEECCC-CSHHHHHHHHHHHHHTTCCEEEECS
T ss_pred HHHHHHHHhCCeEEEEeCC-CCHHHHHHHHHHHHHCCCCEEEEcC
Confidence 3455678899987654333 3445556778887776799999986
No 181
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.19.1.0
Probab=25.67 E-value=56 Score=31.32 Aligned_cols=127 Identities=12% Similarity=0.037 Sum_probs=63.5
Q ss_pred cCCchHHHHHHHHccccccCCcEEEEEEEcCCC-HHHHHHHHHHhhhc-CCCcEEEEeCCCC-CCCCC--------ChHH
Q 011276 307 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDD-VGKIKEVLRRWSDI-DKMDLILTLGGTG-FTPRD--------VTPE 375 (489)
Q Consensus 307 ~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd-~~~I~~~l~~~~~~-~~~DlVIttGG~G-~t~~D--------~T~e 375 (489)
.|+..+.+.+++.+ .+++.+...+.+. -++..+.+++.++. .+.|+++.+|.+. ++.+| -..+
T Consensus 22 L~~~~p~l~~ll~~------~I~l~yhptl~~~~G~~a~~~l~~~~~~~~~~dilvVEGsV~~p~~~~g~~~~gg~~~~e 95 (269)
T 3myr_A 22 TRAHAPTLEDLILD------FISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIPGPDANPGFSTVAGHSNYS 95 (269)
T ss_dssp HHCCSSCHHHHHHH------TCEEEECTTTCSSCHHHHHHHHHHHHHHTTTTCEEEEESBEECTTSCGGGBEETTEEHHH
T ss_pred HCCCCCCHHHHHhC------CeeEEechhhhhhhhHHHHHHHHHHHhcCCCCeEEEEeccCCCCcCCCccceeCChHHHH
Confidence 34445556666554 4678887777664 23344445444431 3689999999994 12222 2344
Q ss_pred HHHHhhcccc--ccHHHHHHhccc-ccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHH
Q 011276 376 ATKELIERET--PGLLYVMMQESL-KVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 439 (489)
Q Consensus 376 av~~~~~~~l--~g~~e~~~~~~~-~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l 439 (489)
.+.++..+.- -.+..--..-|+ +..+......++--++.+.+++.+||.|-.-...++.++.+|
T Consensus 96 ~l~e~~~~~k~VIA~G~CA~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPp~Pe~i~~~l~~ll 162 (269)
T 3myr_A 96 ILMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPVINVPGCPPIPMVITGVIAHYL 162 (269)
T ss_dssp HHHHHHTTCSEEEEEHHHHHHCHHHHSTTCTTCEECHHHHCCSSCEEEECSSSCCHHHHHHHHHHHH
T ss_pred HHHHHcccCCEEEEeccccccCCccCCCCCccccCCHHHhCCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence 5554433320 000000000011 011110000011112345778999999998888888776544
No 182
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=25.67 E-value=2.3e+02 Score=25.71 Aligned_cols=48 Identities=15% Similarity=-0.029 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011276 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
..+...+++.|+++... ...++.+...+.++.+.++++|-||+.+...
T Consensus 27 ~gi~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 27 KGISSILESRGYIGVLF-DANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp HHHHHHHHTTTCEEEEE-ECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred HHHHHHHHHCCCEEEEE-eCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 34566788899988764 4566777777888888776799999988554
No 183
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=25.63 E-value=20 Score=34.40 Aligned_cols=140 Identities=17% Similarity=0.128 Sum_probs=70.0
Q ss_pred cceEEEEEEe----CCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCC-HHHHHHHHHHhhhc-CCCcEEEE
Q 011276 288 TEFSVAILTV----SDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDD-VGKIKEVLRRWSDI-DKMDLILT 361 (489)
Q Consensus 288 ~~~~v~Ii~~----GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd-~~~I~~~l~~~~~~-~~~DlVIt 361 (489)
+++++.-+-. |.++. ..|...+.+.++|.+. +.+.+..++-|. -+...+.+++.++. .+ |++|.
T Consensus 5 ~~~~v~wl~~~~C~GC~is---ll~~~~P~~d~ll~~~------i~l~~~~tlm~a~g~~a~~~~~~~~~~~~~-dil~V 74 (264)
T 1yqw_A 5 HRPSVVWLHNAECTGCTEA---AIRTIKPYIDALILDT------ISLDYQETIMAAAGEAAEAALHQALEGKDG-YYLVV 74 (264)
T ss_dssp CCCEEEEEECBCCSHHHHH---HTTCBTTBHHHHHHHT------CEEEEETTTCSCCHHHHHHHHHHHHTCTTC-EEEEE
T ss_pred CCceEEEEeCCccCcHHHH---HHHcCCCCHHHHHhcc------eEEEEecchhhhchhhHHHHHHHHhccCCC-eEEEE
Confidence 4566665533 34432 4566667777665443 355655555443 34555667776653 25 99999
Q ss_pred eCCCCCCCC-------C-ChHHHHHHhhccc--cccHHHHHHhccc-ccCCCccccccceeEEC--CEEEEEcCCCHHHH
Q 011276 362 LGGTGFTPR-------D-VTPEATKELIERE--TPGLLYVMMQESL-KVTPFAMLSRSAAGIRG--STLIINMPGNPNAV 428 (489)
Q Consensus 362 tGG~G~t~~-------D-~T~eav~~~~~~~--l~g~~e~~~~~~~-~~~p~a~l~r~~~g~~~--~~~v~~LPG~P~a~ 428 (489)
+|.+....+ + -..+.+.++..+. +--+..--..=|+ +..+... ...|+.. .++|+.+||-|-.-
T Consensus 75 eG~V~~~~~g~~~~~~g~~~~~~~~~~~~~~k~VIA~GsCA~~GGi~a~~~n~~---~~~gv~~v~~~PVi~IPGCPP~P 151 (264)
T 1yqw_A 75 EGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPS---QAKGVSEALGVKTINIPGCPPNP 151 (264)
T ss_dssp ESBEECGGGGTTBEETTEEHHHHHHHHHHTCSCEEEESHHHHHCCGGGSTTCTT---CEECHHHHHTSCCEEECSSSCCH
T ss_pred eCCcccCCCccceeeCChHHHHHHHHHhcCCCEEEEeccccccCCccCCCCCCc---ccccccccCCCCEEEeeCCCCCH
Confidence 998865522 0 1123333332211 0000000000011 1111110 1122222 56789999999988
Q ss_pred HHHHHHHHHHHH
Q 011276 429 AECMEALLPALK 440 (489)
Q Consensus 429 ~~~~~~ilp~l~ 440 (489)
...++.++.++.
T Consensus 152 e~i~~~l~~ll~ 163 (264)
T 1yqw_A 152 INFVGAVVHVLT 163 (264)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888887766544
No 184
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=25.61 E-value=51 Score=32.66 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=32.1
Q ss_pred HHHHHHHhCCCeEEEEEeecC--CHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Q 011276 40 MLLAAAMQQHCKLIDLGIVRD--DEEELEKTLDNAFSAGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~D--d~~~i~~~l~~~~~~~~DlvittGG~s~G 89 (489)
-+...|++.|+++.. .+... +.+.+.+.++.+.+.++|+||--||=|+.
T Consensus 49 ~v~~~L~~~g~~~~~-~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv~ 99 (370)
T 1jq5_A 49 TIVNELKKGNIAAEE-VVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTL 99 (370)
T ss_dssp HHHHHHHTTTCEEEE-EECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHH
T ss_pred HHHHHHHHcCCeEEE-EeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 355667788988742 23322 23466666666666679999988886654
No 185
>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to L conversion; HET: FOC; 2.50A {Escherichia coli} SCOP: b.43.2.1 c.85.1.1
Probab=25.50 E-value=45 Score=35.70 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=42.1
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcC-----------hHHHHHHHHHhCC---CeEEEEEeecCCHHHHHHHHHHH
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDS-----------NRAMLLAAAMQQH---CKLIDLGIVRDDEEELEKTLDNA 72 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~ds-----------n~~~l~a~l~~~G---~~~~~~~~v~Dd~~~i~~~l~~~ 72 (489)
++|||||++|+|.-. +-++++ .+-.|.+.|+..+ ++++.-..+-++.++.+...+..
T Consensus 5 ~~~kiGi~p~~~gr~---------~~~r~~l~~~~~~~~~~~~~~i~~~L~~~~~~pvevV~~~~~i~~~~~a~~~~e~f 75 (591)
T 1fui_A 5 SLPKIGIRPVIDGRR---------MGVRESLEEQTMNMAKATAALLTEKLRHACGAAVECVISDTCIAGMAEAAACEEKF 75 (591)
T ss_dssp SCCEEEEEEBCCCCT---------TTHHHHHHHHHHHHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHHH
T ss_pred CCceEEEEecccccc---------ccchhchhHHHHHHHHHHHHHHHHHHhhcCCCCeEEEECCCccCCHHHHHHHHHHh
Confidence 489999999998753 222333 2223444444334 56665555667777776777666
Q ss_pred HhcCCCEEEE
Q 011276 73 FSAGIDILLT 82 (489)
Q Consensus 73 ~~~~~Dlvit 82 (489)
.++++|.+|+
T Consensus 76 ~~~~vd~vi~ 85 (591)
T 1fui_A 76 SSQNVGLTIT 85 (591)
T ss_dssp HTTTEEEEEE
T ss_pred hccCCCEEEE
Confidence 6556888886
No 186
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=25.46 E-value=77 Score=28.98 Aligned_cols=79 Identities=24% Similarity=0.268 Sum_probs=51.2
Q ss_pred EEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCCh
Q 011276 294 ILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVT 373 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T 373 (489)
|+.||=+=..|...|. ++.+++.|... .+.|+++. ...+|-+.....+.+.++++..+.|+||..|=.| +..+++
T Consensus 3 VLvTGF~PF~~~~~NP-S~~~v~~L~~~--~~~~~~i~-~~~lPv~~~~~~~~l~~~~~~~~pd~vi~vG~a~-gr~~i~ 77 (208)
T 1x10_A 3 VLVTGFEPFGGEKINP-TERIAKDLDGI--KIGDAQVF-GRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAP-GRSAIS 77 (208)
T ss_dssp EEEEEECCCTTCSCCH-HHHHHHHHTTC--EETTEEEE-EEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECT-TCCSEE
T ss_pred EEEEeecCCCCCCCCh-HHHHHHHhhcc--CCCCeEEE-EEEEeeEHHHHHHHHHHHHHHhCCCEEEEecCCC-CCceEE
Confidence 6777777666643333 34455666654 13365544 4577878777777888877655799999998444 555777
Q ss_pred HHHH
Q 011276 374 PEAT 377 (489)
Q Consensus 374 ~eav 377 (489)
.|-+
T Consensus 78 iEr~ 81 (208)
T 1x10_A 78 IERI 81 (208)
T ss_dssp EECE
T ss_pred eEEE
Confidence 6655
No 187
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=25.38 E-value=87 Score=29.94 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=30.2
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011276 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
-+...+++.|+++..... .++ ++..+.++.++++++|.||++|.
T Consensus 28 Gi~~~~~~~g~~~~~~~~-~~~-~~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 28 GISRFAQENNAKCKYVTA-STD-AEYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp HHHHHHHHTTCEEEEEEC-CSG-GGHHHHHHHHHHTTCSEEEEEST
T ss_pred HHHHHHHHhCCeEEEEeC-CCH-HHHHHHHHHHHHcCCCEEEECCh
Confidence 345567889998776544 233 33456788777767999999873
No 188
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=24.99 E-value=45 Score=30.87 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=47.6
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhh
Q 011276 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELI 381 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~ 381 (489)
|+-++...+.+++. |.++.....-.|+ -+...+|+.+.+ .+++-|++.|++| +.-|++-..+.-+.
T Consensus 53 DSi~~~~~~~~~~~-----~~~i~~~p~eKD~-TD~e~Al~~a~~-~g~~~I~i~Ga~G-gR~DH~lani~ll~ 118 (222)
T 3lm8_A 53 DSITEQERRRIEKA-----APALHVYQAEKDQ-TDLDLALDWALE-KQPDIIQIFGITG-GRADHFLGNIQLLY 118 (222)
T ss_dssp TTSCHHHHHHHHHH-----CTTCEEECCCSSS-CHHHHHHHHHHH-HCCSEEEEESCCC-SCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHhc-----CCeEEEeCCCCCC-CHHHHHHHHHHH-cCCCEEEEEcCCC-CchhHHHHHHHHHH
Confidence 56566667788877 7666655444455 667888888776 4789999999999 57788876665543
No 189
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=24.58 E-value=37 Score=33.48 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCCeEEEEEeecC-CHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Q 011276 39 AMLLAAAMQQHCKLIDLGIVRD-DEEELEKTLDNAFSAGIDILLTSGGVSMG 89 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~D-d~~~i~~~l~~~~~~~~DlvittGG~s~G 89 (489)
.-+.+.|++.|+++..+.-.++ +.+.+.+. +.+.+.++|+||--||=|+.
T Consensus 51 ~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGGGsv~ 101 (354)
T 3ce9_A 51 ETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGGGKAI 101 (354)
T ss_dssp HHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEESHHHH
T ss_pred HHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECChHHH
Confidence 4456667788888765542343 55666666 55555568999988876653
No 190
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=24.55 E-value=87 Score=27.74 Aligned_cols=44 Identities=16% Similarity=0.360 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcCCeEEee
Q 011276 61 DEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNK 108 (489)
Q Consensus 61 d~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G~~~f~~ 108 (489)
..+.+++.+++.++.++|+||+.+|+ .|+....|.+.|-..+.+
T Consensus 63 E~~~l~~~v~kI~~~g~nVVl~~k~I----~d~a~~~l~k~gI~~vr~ 106 (178)
T 1gml_A 63 EEEYIHQLCEDIIQLKPDVVITEKGI----SDLAQHYLMRANVTAIRR 106 (178)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEESSCB----CHHHHHHHHHTTCEEECC
T ss_pred HHHHHHHHHHHHhhcCCcEEEECCcc----cHHHHHHHHHCCCEEEec
Confidence 34667788888777789999999988 688888888877444443
No 191
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=24.50 E-value=1.1e+02 Score=28.34 Aligned_cols=46 Identities=11% Similarity=0.155 Sum_probs=34.4
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011276 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
-+...+++.|+++..+....+|++...+.++.++.+++|.||..+.
T Consensus 25 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 70 (303)
T 3d02_A 25 GVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN 70 (303)
T ss_dssp HHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3455678899887654445677888888888887767999998764
No 192
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=24.39 E-value=56 Score=30.42 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=43.3
Q ss_pred eEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHh---cCCCEEEEeCCC
Q 011276 10 TIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS---AGIDILLTSGGV 86 (489)
Q Consensus 10 rV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~---~~~DlvittGG~ 86 (489)
..-|+..||-+..-... . ...+..+ .-+-+.+|+++...++-.+.-..+...+.+.+. ...|+|++..|+
T Consensus 26 ~~~iv~lGDSiT~G~~~----~--~~~~~~w-~~l~~~l~~~v~N~G~~G~tt~~~~~~~~~~l~~~~~~pd~V~I~~G~ 98 (274)
T 3bzw_A 26 GKKVGYIGDSITDPNCY----G--DNIKKYW-DFLKEWLGITPFVYGISGRQWDDVPRQAEKLKKEHGGEVDAILVFMGT 98 (274)
T ss_dssp TCEEEEEESTTTCTTTT----G--GGCCCHH-HHHHHHHCCEEEECCCTTCCGGGHHHHHHHHHHHHTTTCCEEEEECCH
T ss_pred CCEEEEEecCcccCCCC----C--CccCccH-HHHHHHhCCeEEEeecCCCCHHHHHHHHHHHHhccCCCCCEEEEEEec
Confidence 35678889988743221 0 0111233 333344589999999998886555555555443 358999998875
No 193
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=24.36 E-value=1.1e+02 Score=28.77 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011276 38 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
..-+...+++.|+++.... ..+|.+.-.+.++.++.+++|-||+.+-.
T Consensus 22 ~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~vdgiIi~~~~ 69 (330)
T 3uug_A 22 GNNIVKQLQEAGYKTDLQY-ADDDIPNQLSQIENMVTKGVKVLVIASID 69 (330)
T ss_dssp HHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred HHHHHHHHHHcCCEEEEee-CCCCHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3446677889999987664 66778888888888877679999998743
No 194
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=24.29 E-value=29 Score=34.11 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=32.3
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecC-CHHHHHHHHHHHHh--cCCCEEEEeCCCcCCC
Q 011276 35 DSNRAMLLAAAMQQHCKLIDLGIVRD-DEEELEKTLDNAFS--AGIDILLTSGGVSMGD 90 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~D-d~~~i~~~l~~~~~--~~~DlvittGG~s~G~ 90 (489)
++..+.+..++.+. +.+.....+-| .-++..+.+.+++. +++||+|.+|.+....
T Consensus 61 ~~~~p~~d~ll~~~-i~l~~~~slm~~~g~~a~~~l~~~~~~~~~~DIliVEGsV~~~~ 118 (317)
T 2wpn_A 61 NSVHPSIADVLLKV-ISLEFHPTVMAWEGEHAIEHMRKVAEKFKGKFFLVIEGSVPVEA 118 (317)
T ss_dssp TCCCTTHHHHHHHT-CEEEECTTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBEECTG
T ss_pred hcCCCCHHHHHhhc-eeeEecCchhhhcchHHHHHHHHHhccCCCCeEEEEeCCcccCC
Confidence 45555566666333 45555443322 23444455665544 3589999999998864
No 195
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=24.14 E-value=5.6e+02 Score=25.74 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=43.8
Q ss_pred HHHHHHhhhcCCCcEEEEeCCCC--CCCCCChHHHHHHhhccccccHHHHHHhcccccCCCccc--ccc-ceeEECCEEE
Q 011276 344 KEVLRRWSDIDKMDLILTLGGTG--FTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAML--SRS-AAGIRGSTLI 418 (489)
Q Consensus 344 ~~~l~~~~~~~~~DlVIttGG~G--~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l--~r~-~~g~~~~~~v 418 (489)
.+.+.+++. ++|+||++=.+- ..+.=+|.+.++.+-.-.+ .--++..+|..+ +|. ..-..++..+
T Consensus 266 ~~~l~e~l~--~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsV--------IVDvA~d~GG~~e~t~~~~~~~~~GV~~ 335 (405)
T 4dio_A 266 AALVAEHIA--KQDIVITTALIPGRPAPRLVTREMLDSMKPGSV--------VVDLAVERGGNIEGAEAGKVTEVGGVRI 335 (405)
T ss_dssp HHHHHHHHH--TCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCE--------EEETTGGGTCSBTTCCTTEEEEETTEEE
T ss_pred HhHHHHHhc--CCCEEEECCcCCCCCCCEEecHHHHhcCCCCCE--------EEEEeCCCCCCccccCCCCeEEECCEEE
Confidence 346677776 899999873221 2334467777665521100 001122222222 111 1123578888
Q ss_pred EEcCCCHHHH----HHHHHH-HHHHHHHH
Q 011276 419 INMPGNPNAV----AECMEA-LLPALKHA 442 (489)
Q Consensus 419 ~~LPG~P~a~----~~~~~~-ilp~l~~~ 442 (489)
++.+..|..+ -.++.. ++|++..+
T Consensus 336 ~gv~nlP~~vp~tAS~~ls~~~~~~l~~l 364 (405)
T 4dio_A 336 VGHLNVAGRIAASASLLYAKNLVTFLETM 364 (405)
T ss_dssp EECSSGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 8877776553 333332 45655443
No 196
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=23.87 E-value=82 Score=30.58 Aligned_cols=67 Identities=19% Similarity=0.160 Sum_probs=36.8
Q ss_pred CcceEEEEEEe-CCcc-cCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC
Q 011276 287 YTEFSVAILTV-SDTV-ASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 364 (489)
Q Consensus 287 ~~~~~v~Ii~~-GdEi-~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG 364 (489)
..+|.|+|.+- ++.- ..+....-+...+.+.|++. |+.+..+.. .++.+.|.+ .++ ++|-||.+||
T Consensus 28 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----G~~~~vv~~-~~~~~~i~~----~l~--~~dglil~GG 95 (315)
T 1l9x_A 28 AKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESA-----GARVVPVRL-DLTEKDYEI----LFK--SINGILFPGG 95 (315)
T ss_dssp CCCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHT-----TCEEEEECS-SCCHHHHHH----HHH--HSSEEEECCC
T ss_pred CCCCEEEEECCcccccccccCcceehHHHHHHHHHHC-----CCEEEEEec-CCCHHHHHH----HHh--cCCEEEEeCC
Confidence 35688998854 2110 11111112334466788888 987654322 123455443 333 5899999998
Q ss_pred C
Q 011276 365 T 365 (489)
Q Consensus 365 ~ 365 (489)
-
T Consensus 96 ~ 96 (315)
T 1l9x_A 96 S 96 (315)
T ss_dssp C
T ss_pred C
Confidence 5
No 197
>2qv3_A VACA, vacuolating cytotoxin; beta-helix; 2.40A {Helicobacter pylori}
Probab=23.64 E-value=12 Score=36.32 Aligned_cols=69 Identities=23% Similarity=0.422 Sum_probs=44.4
Q ss_pred CEEEEeCCCcCCCCCchHHHHHh----------cC--CeEEeeeeecCCCceeeEEEccCCCCcc--------ccccEEE
Q 011276 78 DILLTSGGVSMGDKDFVKPLLQK----------KG--TIYFNKVCMKPGKPLTFAEINIKPTDDV--------MVNKILA 137 (489)
Q Consensus 78 DlvittGG~s~G~~D~~~~~l~~----------~G--~~~f~~v~~kPGkp~~~a~~~~~~~~~~--------~~~~~~v 137 (489)
.++++|-|.|+|++-...+-+.. -| .++-.||..|-|+.+.+-.+-..||.-| +...++.
T Consensus 162 EL~V~Tn~~SvG~yt~FsedIG~qSrI~~V~LeTG~~~~ysgGV~fk~g~klvi~~~y~apwnyfdaRNi~~VEit~k~~ 241 (457)
T 2qv3_A 162 ELIVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIFSGGVKFKSGEKLVIDEFYYSPWNYFDARNIKNVEITRKFA 241 (457)
T ss_dssp EEEECCCTTCSSCCEEEEEECTTTEEEEEEEECCCSTTCCCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEEEEE
T ss_pred heeeeeccccccccccccccccccccceeEeeeccccccccCceeeccCcceeecccccCCccccccccccceEEeeeee
Confidence 68999999999998543322111 02 2333567777777777655544444422 3456899
Q ss_pred EEcCCChHH
Q 011276 138 FGLPGNPVS 146 (489)
Q Consensus 138 ~~LPGnP~a 146 (489)
|+-||+|..
T Consensus 242 fg~~g~~~G 250 (457)
T 2qv3_A 242 SSTPENPWG 250 (457)
T ss_dssp ESSTTSCCS
T ss_pred eCCCCCccc
Confidence 999999854
No 198
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=23.62 E-value=1e+02 Score=29.10 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=27.8
Q ss_pred HHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeC
Q 011276 315 VSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLG 363 (489)
Q Consensus 315 ~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttG 363 (489)
.+.+++. |+++...... ++.+...+.++.+.+ +++|.||++|
T Consensus 30 ~~~~~~~-----g~~~~~~~~~-~~~~~~~~~l~~l~~-~~vdgIi~~~ 71 (296)
T 2hqb_A 30 LNIHSNL-----DVDVVLEEGV-NSEQKAHRRIKELVD-GGVNLIFGHG 71 (296)
T ss_dssp HHHHHHS-----CCEEEEECCC-CSHHHHHHHHHHHHH-TTCCEEEECS
T ss_pred HHHHHHh-----CCeEEEEeCC-CCHHHHHHHHHHHHH-CCCCEEEEcC
Confidence 3455566 9887654333 344455667887775 5899999976
No 199
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=23.47 E-value=2.6e+02 Score=27.02 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHH------HHHHHHhcCCCEEEEeCCCcCCCCCch-HHHHHhc
Q 011276 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEK------TLDNAFSAGIDILLTSGGVSMGDKDFV-KPLLQKK 101 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~------~l~~~~~~~~DlvittGG~s~G~~D~~-~~~l~~~ 101 (489)
-|..++..+...|+++..+..-++..+...+ .+.+++. ++|+|+..=......+.++ .+.++.+
T Consensus 166 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~-~aDvVi~~vp~~~~t~~~i~~~~~~~m 236 (330)
T 2gcg_A 166 IGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAA-QSDFIVVACSLTPATEGLCNKDFFQKM 236 (330)
T ss_dssp HHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHH-HCSEEEECCCCCTTTTTCBSHHHHHHS
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHh-hCCEEEEeCCCChHHHHhhCHHHHhcC
Confidence 4567777888899988877765555544332 2455565 4899988766554444444 3444433
No 200
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=23.38 E-value=1.8e+02 Score=27.61 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=44.5
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHh--cCCCEEEEeC
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS--AGIDILLTSG 84 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~--~~~DlvittG 84 (489)
.+++|+++.-+.. . ..-+..-..-+...+++.|+++... ....|.+.-.+.+++++. +++|.||+++
T Consensus 2 ~~~~Ig~i~p~~~-----~-----~~f~~~~~~g~~~~a~~~g~~~~~~-~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 2 SLTSVVFLNPGNS-----T-----ETFWVSYSQFMQAAARDLGLDLRIL-YAERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp -CCEEEEEECSCT-----T-----CHHHHHHHHHHHHHHHHHTCEEEEE-ECTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CCCEEEEECCCCC-----C-----ChHHHHHHHHHHHHHHHcCCeEEEE-ECCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 4678998875411 0 0111223344566788899998766 566778877888888887 3799999975
No 201
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=23.28 E-value=86 Score=29.46 Aligned_cols=47 Identities=9% Similarity=-0.020 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCeEEEEEeecCCHHHHHH-------HHHHHHhcCCCEEEEeCC
Q 011276 38 RAMLLAAAMQQHCKLIDLGIVRDDEEELEK-------TLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~-------~l~~~~~~~~DlvittGG 85 (489)
+..++..|.+.|+++..+.+-++..+.+.+ .+.++++ ++|+||++=.
T Consensus 13 G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-~advvi~~v~ 66 (287)
T 3pdu_A 13 GGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCA-ACDITIAMLA 66 (287)
T ss_dssp HHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHH-HCSEEEECCS
T ss_pred HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHH-cCCEEEEEcC
Confidence 456666777789998877766665555543 3455555 4899998753
No 202
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=23.25 E-value=2.3e+02 Score=25.83 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011276 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
.-+...+++.|+++... ...+|.+...+.++.+.+++.|-||..+...
T Consensus 28 ~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 28 SGVESEARHKGYSVLLA-NTAEDIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp HHHHHHHHHTTCEEEEE-ECTTCHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred HHHHHHHHHCCCEEEEE-eCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 34556788899988754 4567788888888888776799999887544
No 203
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=23.22 E-value=23 Score=30.91 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=59.9
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCC----CHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhcc
Q 011276 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPD----DVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIER 383 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~D----d~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~ 383 (489)
|..+..+.+.|.+.+... |++|..++.-.+ |..++...+.+++. .+|.-|+..|||.+- +=+.+|
T Consensus 15 DhaG~~lK~~i~~~L~~~-G~eV~D~G~~~~~~~~dYpd~a~~va~~V~--~~d~GIliCGTGiG~--------siaANK 83 (148)
T 4em8_A 15 DHAGVELRLFLSAYLRDL-GCEVFDCGCDPKEHSVDYPDYVHDVVREVS--DTSFGVLICGTGIGM--------SIAANR 83 (148)
T ss_dssp CGGGHHHHHHHHHHHHHT-TCEEEECCCCTTCSCCCGGGGTHHHHTTCB--TTBEEEEEESSSHHH--------HHHHTT
T ss_pred CchhHHHHHHHHHHHHHC-CCEEEEeCCCCCCCCCChHHHHHHHHHHHH--HhCeEEEEccCcHHH--------HHHHhc
Confidence 444444444443333333 999999886433 46778888888776 799999999999652 222222
Q ss_pred ccccHHHHHHhcccccCC-CccccccceeEECCEEEEEcCCCHHHHHHHHHHH
Q 011276 384 ETPGLLYVMMQESLKVTP-FAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL 435 (489)
Q Consensus 384 ~l~g~~e~~~~~~~~~~p-~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i 435 (489)
.||+.- .+-..+ .+. .+-..|+..|++|++--.....+.+.+
T Consensus 84 -v~GIRA-----Al~~d~~sA~----~ar~hNnANVL~lG~rvig~~lA~~iv 126 (148)
T 4em8_A 84 -HKNIRA-----ALCSSTMLAK----LSREHNDANVLCFGSRYIDPDTAQSVL 126 (148)
T ss_dssp -STTCCE-----EECSSHHHHH----HHHHHHCCCEEEEETTTSCHHHHHHHH
T ss_pred -CCCeEE-----EEeCCHHHHH----HHHHhCCCcEEEEchhhhCHHHHHHHH
Confidence 222210 000011 111 223357889999999755555444433
No 204
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=23.10 E-value=2.6e+02 Score=28.53 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=31.2
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcC
Q 011276 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVP 337 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~ 337 (489)
+..+|+|+-..-.=-...++++-+..+.+.|.+. |++|..+--.-
T Consensus 321 ~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~-----g~~v~~~DP~~ 365 (446)
T 4a7p_A 321 RGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDA-----GATVKAYDPEG 365 (446)
T ss_dssp TTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHT-----SCEEEEECSSC
T ss_pred CCCEEEEEEEEeCCCCcccccChHHHHHHHHHHC-----CCEEEEECCCC
Confidence 4457777755433234567788888888999888 98887765443
No 205
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=22.93 E-value=1.3e+02 Score=28.65 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=39.7
Q ss_pred CCcEEcChHHHHHHHHHhCCCeEEEEEeecC--------CHHHHHHHHHHHHhcCCC-EEEEeCC
Q 011276 30 RGQIRDSNRAMLLAAAMQQHCKLIDLGIVRD--------DEEELEKTLDNAFSAGID-ILLTSGG 85 (489)
Q Consensus 30 ~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~D--------d~~~i~~~l~~~~~~~~D-lvittGG 85 (489)
.|+|...|...|..+|+ .|+-++..++..| |.|.+...+..++ +|| +|+.|-=
T Consensus 154 vG~i~~v~~~~i~~lL~-~g~IPVi~~v~~~~~G~~~~i~~D~~Aa~lA~~L--~Ad~LiilTDV 215 (279)
T 3l86_A 154 VGDVTHINKRVIEEFLE-NRQIPILASLGYSKEGDMLNINADYLATAVAVAL--AADKLILMTNV 215 (279)
T ss_dssp BEEEEEECHHHHHHHHH-TTCEEEEESEEECTTSCEEECCHHHHHHHHHHHT--TCSEEEEECSS
T ss_pred ccccchhhHHHHHHHHh-CCcEEEECCcEECCCCCEeecCHHHHHHHHHHHc--CCCEEEEEeCC
Confidence 47888889999999886 5777776664433 7799999999988 488 5556553
No 206
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=22.86 E-value=29 Score=33.63 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=35.7
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCc-EEEEEEEc----CCCHHHHHHHHHHhhhcCCCcEEEEe
Q 011276 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGA-KVVATDVV----PDDVGKIKEVLRRWSDIDKMDLILTL 362 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~-~v~~~~~v----~Dd~~~I~~~l~~~~~~~~~DlVItt 362 (489)
+..++++|.+.... .+.......+.+++. |+ ++..+.+- .+| +++.+.|+ ++|.|+.+
T Consensus 55 ~~~~I~~IptAs~~-----~~~~~~~~~~~f~~l-----G~~~v~~L~i~~r~~a~~-~~~~~~l~------~ad~I~v~ 117 (291)
T 3en0_A 55 NDAIIGIIPSASRE-----PLLIGERYQTIFSDM-----GVKELKVLDIRDRAQGDD-SGYRLFVE------QCTGIFMT 117 (291)
T ss_dssp GGCEEEEECTTCSS-----HHHHHHHHHHHHHHH-----CCSEEEECCCCSGGGGGC-HHHHHHHH------HCSEEEEC
T ss_pred CCCeEEEEeCCCCC-----hHHHHHHHHHHHHHc-----CCCeeEEEEecCccccCC-HHHHHHHh------cCCEEEEC
Confidence 35899999875432 122234445677777 98 44433321 333 24444444 58999999
Q ss_pred CCC
Q 011276 363 GGT 365 (489)
Q Consensus 363 GG~ 365 (489)
||-
T Consensus 118 GGn 120 (291)
T 3en0_A 118 GGD 120 (291)
T ss_dssp CSC
T ss_pred CCC
Confidence 984
No 207
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=22.84 E-value=43 Score=30.14 Aligned_cols=76 Identities=9% Similarity=0.145 Sum_probs=44.5
Q ss_pred CCCEEEEeCCCcCCCCCchHHHHHhcC--CeE--------EeeeeecCCCceeeEEEccCCCCccccccEEE-EEcCCCh
Q 011276 76 GIDILLTSGGVSMGDKDFVKPLLQKKG--TIY--------FNKVCMKPGKPLTFAEINIKPTDDVMVNKILA-FGLPGNP 144 (489)
Q Consensus 76 ~~DlvittGG~s~G~~D~~~~~l~~~G--~~~--------f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v-~~LPGnP 144 (489)
.+|++|.+|.+.......+..+.+.+. +.+ +.|+. +.+....-++ +-.+| +.+||.|
T Consensus 74 qaDiliVeG~Vt~~m~~~l~~~~e~~p~pk~VIAvGsCA~~GGi~---~~y~~~~gvd---------~iipVDv~IPGCP 141 (181)
T 3i9v_6 74 QADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMF---NNYAIVQNVD---------SVVPVDVYVPGCP 141 (181)
T ss_dssp CCCCEEEESCCBTTTHHHHHHHHHSSCSSCCEEEEHHHHHSCTTC---CSTTBCSCGG---------GTSCCSEEECCSS
T ss_pred CceEEEEeccCCcccHHHHHHHHHHcCCCceEEEeecccccCCCC---CCCcccCCcc---------cCCCccEEeeCCC
Confidence 599999999998766545555555443 222 13443 2222222121 11344 8899999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 011276 145 VSCIVCFHLYIVPAIRHLSG 164 (489)
Q Consensus 145 ~aa~~~~~~~v~P~L~~l~G 164 (489)
-.-...++.+ .-+++++..
T Consensus 142 P~Pe~il~~l-~~l~~ki~~ 160 (181)
T 3i9v_6 142 PRPEALIYAV-MQLQKKVRG 160 (181)
T ss_dssp CCHHHHHHHH-HHHHHHHTT
T ss_pred CCHHHHHHHH-HHHHHHHhh
Confidence 8888777766 445566644
No 208
>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely alpha-helical, C-terminal domain M beta-sheet (trefoil-like); 2.49A {Shewanella oneidensis} SCOP: c.8.2.2 d.334.1.1
Probab=22.80 E-value=33 Score=36.70 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=39.5
Q ss_pred eeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEE--EeecCC---------------HHHH
Q 011276 3 VKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDL--GIVRDD---------------EEEL 65 (489)
Q Consensus 3 V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~--~~v~Dd---------------~~~i 65 (489)
+.-++||.|+|++|.+|+.+-... ++.-.-.++.-+++.|..+..+ .+..+| +|.|
T Consensus 80 ~~~~~kP~IgI~ns~~d~~p~h~h-------l~~l~~~Vk~gv~~aGg~p~efg~~pav~DGit~G~~GM~ySL~SRelI 152 (628)
T 2gp4_A 80 LRQLTKANIGIITAFNDMLSAHQP-------YETYPDLLKKACQEVGSVAQVAGGVPAMCDGVTQGQPGMELSLLSREVI 152 (628)
T ss_dssp -------------------------------------CCC---CCCCEEEEECC-BC--CCCCCCSSSGGGGHHHHHHHH
T ss_pred HhccCCCEEEEEeccccCcccchh-------HHHHHHHHHHHHHHcCCcceecCCCCcCCCccccCCcccccchhhHHHH
Confidence 456789999999999999854432 3444455667788888877775 233333 6788
Q ss_pred HHHHHHHHh-cCCCEEEEeCCCcCCCCCchHHHH---HhcC---CeEEeeeeecCCCc
Q 011276 66 EKTLDNAFS-AGIDILLTSGGVSMGDKDFVKPLL---QKKG---TIYFNKVCMKPGKP 116 (489)
Q Consensus 66 ~~~l~~~~~-~~~DlvittGG~s~G~~D~~~~~l---~~~G---~~~f~~v~~kPGkp 116 (489)
...++..+. ...|-+|..||-=. -++-.| .++| .+.+.+=.|.||++
T Consensus 153 AdsiE~~~~a~~~Dg~V~i~~CDK----~~PG~LMaA~r~~niPaIfV~gGpM~~G~~ 206 (628)
T 2gp4_A 153 AMATAVGLSHNMFDGALLLGICDK----IVPGLLIGALSFGHLPMLFVPAGPMKSGIP 206 (628)
T ss_dssp HHHHHHHHTTCCCSEEEEECCSTT----TTHHHHHHHHTTTTSCEEECCCCC------
T ss_pred HHHHHHHHhCCCCCeEEEeccCCC----ccHHHHHHHHhcCCCCEEEEeeCCCCCCCC
Confidence 888888775 45799999997421 233332 3354 35556666777753
No 209
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=22.75 E-value=2.2e+02 Score=28.52 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=45.2
Q ss_pred ceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011276 289 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
.++|++|--|.- ..+.+.|.+. |+++..+..- .+.++|. . ..+|-||.+||-|-.
T Consensus 190 ~~~V~viD~G~k-----------~ni~r~L~~~-----G~~v~vvp~~-~~~e~i~----~----~~~DGliLsGGPgdp 244 (379)
T 1a9x_B 190 PFHVVAYDFGAK-----------RNILRMLVDR-----GCRLTIVPAQ-TSAEDVL----K----MNPDGIFLSNGPGDP 244 (379)
T ss_dssp CEEEEEEESSCC-----------HHHHHHHHHT-----TEEEEEEETT-CCHHHHH----T----TCCSEEEECCCSBCS
T ss_pred CCEEEEEECCCh-----------HHHHHHHHHC-----CCEEEEEecc-CCHHHHh----h----cCCCEEEEeCCCCCh
Confidence 468888876431 4578889888 9876543221 2333332 1 269999999997654
Q ss_pred CC-CChHHHHHHhhccccc
Q 011276 369 PR-DVTPEATKELIERETP 386 (489)
Q Consensus 369 ~~-D~T~eav~~~~~~~l~ 386 (489)
.+ +...+.++++.+..+|
T Consensus 245 ~~~~~~~~~Ir~~~~~~~P 263 (379)
T 1a9x_B 245 APCDYAITAIQKFLETDIP 263 (379)
T ss_dssp TTCHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 43 3455667777664444
No 210
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=22.69 E-value=1.2e+02 Score=28.67 Aligned_cols=47 Identities=13% Similarity=0.038 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011276 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
..+...+++.|+++.......+|.+.-.+.++.++.+++|.||..+-
T Consensus 23 ~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~ 69 (316)
T 1tjy_A 23 NGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAV 69 (316)
T ss_dssp HHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 34556678889887654335677888788888888778999998763
No 211
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=22.42 E-value=71 Score=31.27 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=40.6
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHH--HHhCCCeEEEEEeecC--------CHHHHHHHHHHHHhcCCC
Q 011276 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAA--AMQQHCKLIDLGIVRD--------DEEELEKTLDNAFSAGID 78 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~--l~~~G~~~~~~~~v~D--------d~~~i~~~l~~~~~~~~D 78 (489)
.-|.+-.||..-.....+ .+.=+-.-+..+. +.+.|+.+..+ |++| |++..++.+....+. +|
T Consensus 8 vIIt~A~tGa~~t~~~~P-----~lPvTpeEia~~A~~~~~AGAaivHl-HvRdp~dG~ps~d~~~y~e~i~~IR~~-~d 80 (314)
T 3lot_A 8 VIVTCAITGAIHTPSMSP-----YLPVTPDQIVEEAVKAAEAGAGMVHI-HARDPKDGRPTTDVEVFRYICREIKKQ-SD 80 (314)
T ss_dssp ECEEEECSCSSSCGGGCT-----TSCCSHHHHHHHHHHHHHHTCSEEEE-CEECTTTCCEECCHHHHHHHHHHHHHH-CC
T ss_pred EEEEEcccCCcCCccCCC-----CCCCCHHHHHHHHHHHHHcCCCEEEE-eecCCCCCCcCCCHHHHHHHHHHHHhc-CC
Confidence 345556678764322111 1222333344443 45679876654 6665 567777777766554 89
Q ss_pred EEE--EeCCCc
Q 011276 79 ILL--TSGGVS 87 (489)
Q Consensus 79 lvi--ttGG~s 87 (489)
+|| ||||++
T Consensus 81 ~iI~~TTgg~~ 91 (314)
T 3lot_A 81 VVINVTTGGGG 91 (314)
T ss_dssp CEEEECSSTTG
T ss_pred eEEEeCCCCcC
Confidence 777 778764
No 212
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=22.40 E-value=1.6e+02 Score=26.59 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=33.4
Q ss_pred HHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011276 42 LAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 42 ~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
.+.+++||+.++.+..-.-+.+++.+.|++...+.-|++|.-|+.=
T Consensus 67 k~~ik~wgG~VVHLTMYG~~i~dvi~eIr~~~~~~~~iLVVVGaeK 112 (201)
T 2yy8_A 67 RKVMKEFTGVKVHLTMYGLHVDDVIEELKEKLKKGEDFMIIVGAEK 112 (201)
T ss_dssp HHHHHHCCSEEEEEEEEEEEHHHHHHHHHHHHHTTCCEEEEECSSC
T ss_pred HHHHHhcCCEEEEEecCCCchHHHHHHHHhhcccCCCEEEEECCCc
Confidence 5678888999988887766666666666654332469999999754
No 213
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=22.28 E-value=88 Score=29.02 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011276 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
.-+...+++.|+++..... +|.+.-.+.++.++++++|-||+.+-
T Consensus 22 ~gi~~~a~~~g~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (306)
T 8abp_A 22 KFADKAGKDLGFEVIKIAV--PDGEKTLNAIDSLAASGAKGFVICTP 66 (306)
T ss_dssp HHHHHHHHHHTEEEEEEEC--CSHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHHHHHHHHcCCEEEEeCC--CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3455677888999876544 57888888899988777999999874
No 214
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=21.92 E-value=48 Score=30.73 Aligned_cols=65 Identities=15% Similarity=0.061 Sum_probs=47.2
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHh
Q 011276 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKEL 380 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~ 380 (489)
|+-++...+.+++. |.++.....-.|+ -+...+|+.+.+ .+++-|++.|++| +.-|++-..+.-+
T Consensus 52 DSi~~~~~~~~~~~-----~~~i~~~p~eKD~-TD~e~Al~~a~~-~g~~~I~i~Ga~G-GR~DH~lani~lL 116 (223)
T 3k94_A 52 DSLPAEDVVKLQQA-----FPDLDVWPAEKDK-TDMEIALDWAVE-QTARCIRLFGATG-GRLDHLFGNVELL 116 (223)
T ss_dssp GGSCHHHHHHHHHH-----CTTCCEECCBTTB-CHHHHHHHHHHT-TCCSEEEEESCSS-SSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHhc-----CCeEEECCCcCCC-CHHHHHHHHHHH-cCCCEEEEEcCCC-CchhHHHHHHHHH
Confidence 55556666777777 7666555444455 668888988876 5899999999999 5778877766554
No 215
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=21.75 E-value=1.1e+02 Score=29.05 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=45.8
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHH-------HHHHHHhcCCCEE
Q 011276 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEK-------TLDNAFSAGIDIL 80 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~-------~l~~~~~~~~Dlv 80 (489)
+.+|+||-.|. -+..++..|.+.|++|..+.+-++..+.+.+ .+++++ + +|+|
T Consensus 15 ~~~I~vIG~G~------------------mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~-~-aDvv 74 (296)
T 3qha_A 15 QLKLGYIGLGN------------------MGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVA-A-ADLI 74 (296)
T ss_dssp CCCEEEECCST------------------THHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHT-T-SSEE
T ss_pred CCeEEEECcCH------------------HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHH-h-CCEE
Confidence 35788887772 3466777788889998888776666666553 345555 3 8999
Q ss_pred EEeCCCcCCCCCchHHHHHhc
Q 011276 81 LTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 81 ittGG~s~G~~D~~~~~l~~~ 101 (489)
|++=.. ...+.++++++
T Consensus 75 i~~vp~----~~~~~~v~~~l 91 (296)
T 3qha_A 75 HITVLD----DAQVREVVGEL 91 (296)
T ss_dssp EECCSS----HHHHHHHHHHH
T ss_pred EEECCC----hHHHHHHHHHH
Confidence 987532 22455566544
No 216
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=21.70 E-value=53 Score=35.53 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=56.3
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHH----HHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEE
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAM----LLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLT 82 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~----l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlvit 82 (489)
+++||.+-+.|.++-+.| .-+ ++.+|+..|++|+++|.--. ++++.++..+ .++|+|..
T Consensus 601 ~kGKVVIATVgGD~HDIG-------------KklVaNIVa~~LE~aGFEVIDLGvdVP-pEeIVeAA~E---edADVVGL 663 (763)
T 3kp1_A 601 TPLKIVAATVGEDEHSVG-------------LREVIDIKHGGIEKYGVEVHYLGTSVP-VEKLVDAAIE---LKADAILA 663 (763)
T ss_dssp SCCEEEEEEBTTCCCCHH-------------HHHTTSTTTTCGGGGTCEEEECCSSBC-HHHHHHHHHH---TTCSEEEE
T ss_pred cCCEEEEEeCCCChhhhh-------------hHHHHHHHHHHHHhCCCEEEECCCCCC-HHHHHHHHHH---cCCCEEEE
Confidence 467888888877765332 222 25679999999999987432 4555555544 36999999
Q ss_pred eCCCcCC--CCCchHHHH---HhcC-C----eEEeeeeec
Q 011276 83 SGGVSMG--DKDFVKPLL---QKKG-T----IYFNKVCMK 112 (489)
Q Consensus 83 tGG~s~G--~~D~~~~~l---~~~G-~----~~f~~v~~k 112 (489)
|+=.+.+ ..+.+++++ ++.| . +++-|....
T Consensus 664 SsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~t 703 (763)
T 3kp1_A 664 STIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVT 703 (763)
T ss_dssp ECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCC
T ss_pred eccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCC
Confidence 9866654 345556544 4445 1 445555543
No 217
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=21.63 E-value=65 Score=31.79 Aligned_cols=47 Identities=9% Similarity=-0.017 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011276 38 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
...+...+++.|+++......+.+..++...+.++.+.++|+|+..+
T Consensus 181 ~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~ 227 (419)
T 3h5l_A 181 ANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTH 227 (419)
T ss_dssp HHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcc
Confidence 34567778888999987766654334455555555544699999875
No 218
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=21.44 E-value=1e+02 Score=29.04 Aligned_cols=30 Identities=7% Similarity=0.142 Sum_probs=18.2
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEE
Q 011276 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDL 55 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~ 55 (489)
+.+|+||-.|. -+..+...|.+.|+++..+
T Consensus 4 ~~~i~iiG~G~------------------~G~~~a~~l~~~g~~V~~~ 33 (301)
T 3cky_A 4 SIKIGFIGLGA------------------MGKPMAINLLKEGVTVYAF 33 (301)
T ss_dssp CCEEEEECCCT------------------THHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEECccH------------------HHHHHHHHHHHCCCeEEEE
Confidence 46888887762 2344555555667766543
No 219
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=21.34 E-value=99 Score=28.41 Aligned_cols=33 Identities=21% Similarity=0.087 Sum_probs=22.5
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEe
Q 011276 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGI 57 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~ 57 (489)
...+|+||-+| .-+..|+..|.+.|+++..+..
T Consensus 18 ~~~kIgiIG~G------------------~mG~alA~~L~~~G~~V~~~~r 50 (245)
T 3dtt_A 18 QGMKIAVLGTG------------------TVGRTMAGALADLGHEVTIGTR 50 (245)
T ss_dssp -CCEEEEECCS------------------HHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCeEEEECCC------------------HHHHHHHHHHHHCCCEEEEEeC
Confidence 35678888766 3356677777788988876654
No 220
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=21.29 E-value=1.4e+02 Score=29.06 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHH------HHHHHHhcCCCEEEEeCCCcCCCCCch-HHHHHhc
Q 011276 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEK------TLDNAFSAGIDILLTSGGVSMGDKDFV-KPLLQKK 101 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~------~l~~~~~~~~DlvittGG~s~G~~D~~-~~~l~~~ 101 (489)
.-|..++..++.+|+++..+..-+.+.+...+ .+.+++.+ +|+|++.=-.....+.++ .+.++.+
T Consensus 155 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~-aDvV~l~~P~t~~t~~li~~~~l~~m 226 (330)
T 4e5n_A 155 AIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFAS-SDFILLALPLNADTLHLVNAELLALV 226 (330)
T ss_dssp HHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHH-CSEEEECCCCSTTTTTCBCHHHHTTS
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhh-CCEEEEcCCCCHHHHHHhCHHHHhhC
Confidence 45678888899999999888776644443322 25666764 999998765544444444 3455544
No 221
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=21.26 E-value=74 Score=28.61 Aligned_cols=82 Identities=20% Similarity=0.111 Sum_probs=44.7
Q ss_pred EEEEeCCcccCCCccC---------CchHHHHHHHHccccccCCcEEEEEEEcCCCHH----------HHHHHHHHhhhc
Q 011276 293 AILTVSDTVASGAGPD---------RSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVG----------KIKEVLRRWSDI 353 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~D---------~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~----------~I~~~l~~~~~~ 353 (489)
-|+.+||.+..|.... .=...+++.|. . ++++....+-.+... ...+.+...+..
T Consensus 25 ~I~~lGDSit~G~~~~~~~~~~~~~~w~~~l~~~l~-~-----~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~l~~~l~~ 98 (232)
T 3dci_A 25 TVLAFGDSLTWGADPATGLRHPVEHRWPDVLEAELA-G-----KAKVHPEGLGGRTTCYDDHAGPACRNGARALEVALSC 98 (232)
T ss_dssp EEEEEESHHHHTBCTTTCCBCCGGGSHHHHHHHHHT-T-----SEEEEEEECTTCBSSCCCCSSSSCCBHHHHHHHHHHH
T ss_pred EEEEEECccccCCCCCCcccCCcCCccHHHHHHHhC-C-----CCeEEEcccCCccccccCcccccchhHHHHHHHHHhh
Confidence 5888999998775431 11334445552 2 567777776665542 223333333322
Q ss_pred CCC-cEEEEeCCCCCCCCCC--hHHHHHHh
Q 011276 354 DKM-DLILTLGGTGFTPRDV--TPEATKEL 380 (489)
Q Consensus 354 ~~~-DlVIttGG~G~t~~D~--T~eav~~~ 380 (489)
... |+|+...|+=-..... +.+.+.+-
T Consensus 99 ~~p~d~VvI~~GtND~~~~~~~~~~~~~~~ 128 (232)
T 3dci_A 99 HMPLDLVIIMLGTNDIKPVHGGRAEAAVSG 128 (232)
T ss_dssp HCSCSEEEEECCTTTTSGGGTSSHHHHHHH
T ss_pred CCCCCEEEEEeccCCCccccCCCHHHHHHH
Confidence 244 9999998865433322 44444443
No 222
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=21.17 E-value=1.2e+02 Score=28.54 Aligned_cols=31 Identities=10% Similarity=0.015 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHH
Q 011276 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEK 67 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~ 67 (489)
-|..++..+.+.|++|+.+.+-++..+...+
T Consensus 15 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~ 45 (283)
T 4e12_A 15 LGSQIAFQTAFHGFAVTAYDINTDALDAAKK 45 (283)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH
Confidence 4567888888899998776554443333333
No 223
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=21.08 E-value=39 Score=29.59 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=50.4
Q ss_pred HHHhCCCeE--EEEEeecCCHHHHHHHHHHHHh-cCCCEEEEeCCC---cCCCCCchHHHHHhcCCeEEeeeeecCCCce
Q 011276 44 AAMQQHCKL--IDLGIVRDDEEELEKTLDNAFS-AGIDILLTSGGV---SMGDKDFVKPLLQKKGTIYFNKVCMKPGKPL 117 (489)
Q Consensus 44 ~l~~~G~~~--~~~~~v~Dd~~~i~~~l~~~~~-~~~DlvittGG~---s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~ 117 (489)
.|++.|+.. +..-.||-..| |--+.+++++ .++|.||+.|=+ +...+||+.....+- .-.++++=|.|+
T Consensus 37 ~l~~~gv~~~~i~v~~VPGafE-iP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~V~~~vs~G----l~~v~l~~~vPV 111 (154)
T 1rvv_A 37 ALLRHGVDTNDIDVAWVPGAFE-IPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKG----IAQAANTTGVPV 111 (154)
T ss_dssp HHHHTTCCGGGEEEEEESSGGG-HHHHHHHHHHTSCCSEEEEEEEEECCSSSHHHHHHHHHHHH----HHHHHHHHCSCE
T ss_pred HHHHcCCCccceEEEECCcHHH-HHHHHHHHHhcCCCCEEEEeeeeecCCchHHHHHHHHHHHH----HHHHHhhhCCCE
Confidence 466778642 35557887766 3334444443 359999999988 444578887776653 346777788999
Q ss_pred eeEEEc
Q 011276 118 TFAEIN 123 (489)
Q Consensus 118 ~~a~~~ 123 (489)
.+|.+-
T Consensus 112 ~~GVLT 117 (154)
T 1rvv_A 112 IFGIVT 117 (154)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999764
No 224
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=20.99 E-value=1.2e+02 Score=27.16 Aligned_cols=49 Identities=16% Similarity=0.269 Sum_probs=30.3
Q ss_pred CcceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC
Q 011276 287 YTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 364 (489)
Q Consensus 287 ~~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG 364 (489)
.++++++||. +.| |-..+.+.|++. |+++..+ ++. ++ ++ .+|.||.+||
T Consensus 18 ~~~~~I~ii~-----~~~-----~~~~~~~~l~~~-----g~~~~~~---~~~-~~--------l~--~~d~iil~GG 66 (208)
T 2iss_D 18 GSHMKIGVLG-----VQG-----DVREHVEALHKL-----GVETLIV---KLP-EQ--------LD--MVDGLILPGG 66 (208)
T ss_dssp --CCEEEEEC-----SSS-----CHHHHHHHHHHT-----TCEEEEE---CSG-GG--------GG--GCSEEEECSS
T ss_pred CCCcEEEEEE-----CCC-----chHHHHHHHHHC-----CCEEEEe---CCh-HH--------Hh--hCCEEEECCC
Confidence 3557899982 133 334456777777 9876654 332 11 33 6999999998
No 225
>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha}
Probab=20.86 E-value=1.8e+02 Score=28.81 Aligned_cols=143 Identities=13% Similarity=0.041 Sum_probs=72.0
Q ss_pred cceEEEEEEe----CCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCH-HHHHHHHHHhhhc-CCCcEEEE
Q 011276 288 TEFSVAILTV----SDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDV-GKIKEVLRRWSDI-DKMDLILT 361 (489)
Q Consensus 288 ~~~~v~Ii~~----GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~-~~I~~~l~~~~~~-~~~DlVIt 361 (489)
+++++.-+-. |..+. ..|...+.+.+++.+ .+++.+..++.+.. +.-.+.|++.++. .+.|++|.
T Consensus 5 ~r~~ViWl~~~~CtGCt~S---lL~~~~P~l~~ll~~------~I~L~yhptlm~~~G~~a~~~l~~~~~~~~~~dILlV 75 (339)
T 3rgw_S 5 PRTPVLWLHGLECTCCSES---FIRSAHPLAKDVVLS------MISLDYDDTLMAAAGHQAEAILEEIMTKYKGNYILAV 75 (339)
T ss_dssp CCEEEEEEECBCCSHHHHH---HTTCBTTBHHHHHHH------TEEEEEETTTCSCCHHHHHHHHHHHHHHTTTCSEEEE
T ss_pred CCCcEEEEECCcCCchHHH---HHcCCCCCHHHHHhC------CeeEEecchhhhhhhHHHHHHHHHHHhccCCCcEEEE
Confidence 5677777753 33322 346666767766554 46788887777653 3334444444321 37899999
Q ss_pred eCCCCCCCCC--------ChHHHHHHhhccc--cccHHHHHHhcccc-cCCCccccccceeEECCEEEEEcCCCHHHHHH
Q 011276 362 LGGTGFTPRD--------VTPEATKELIERE--TPGLLYVMMQESLK-VTPFAMLSRSAAGIRGSTLIINMPGNPNAVAE 430 (489)
Q Consensus 362 tGG~G~t~~D--------~T~eav~~~~~~~--l~g~~e~~~~~~~~-~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~ 430 (489)
+|.+....+. -..+.+.++..+. +--+..--..=|+. ..+......+.--++.+++++.+||.|-.-..
T Consensus 76 EGsV~~~~~g~y~~~gg~~~~e~l~e~~~~~k~VIAvGtCA~~GGi~a~~~n~~~~~gv~~~i~~~vdi~IPGCPP~Pe~ 155 (339)
T 3rgw_S 76 EGNPPLNQDGMSCIIGGRPFIEQLKYVAKDAKAIISWGSCASWGCVQAAKPNPTQATPVHKVITDKPIIKVPGCPPIAEV 155 (339)
T ss_dssp ESBCBCSGGGTTBEETTEEHHHHHHHHHTTCSEEEEEHHHHHTCTGGGSTTCTTCBCCGGGTCCSSCEEEECSSSCCHHH
T ss_pred eeeccCCCCcceeccCChHHHHHHHHHccCCCEEEEeccccccCCcCCCCCCccccCCHHHhCCCCCEEEeCCCCCCHHH
Confidence 9998543210 1133333333221 00000000000111 11110000011112345689999999988888
Q ss_pred HHHHHHHHH
Q 011276 431 CMEALLPAL 439 (489)
Q Consensus 431 ~~~~ilp~l 439 (489)
.++.++-+|
T Consensus 156 i~~~l~~ll 164 (339)
T 3rgw_S 156 MTGVITYML 164 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776544
No 226
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=20.68 E-value=1e+02 Score=25.39 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=23.9
Q ss_pred CcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEe
Q 011276 327 GAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTL 362 (489)
Q Consensus 327 G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVItt 362 (489)
|+++ .+-.+.+++.++++++++. ++.+|+.|
T Consensus 21 Gie~----~~v~~~ee~~~~~~~l~~~-digIIlIt 51 (115)
T 3aon_B 21 GFDV----QHGTTKTEIRKTIDEMAKN-EYGVIYIT 51 (115)
T ss_dssp TCEE----ECCCSHHHHHHHHHHHHHT-TEEEEEEE
T ss_pred CCeE----EEeCCHHHHHHHHHHHHhc-CceEEEEe
Confidence 8854 2337889999999999974 77788875
No 227
>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A
Probab=20.67 E-value=26 Score=33.56 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=42.6
Q ss_pred eeCCeEEEEecCC----cCcCCCCCCCCCCcEEcChHHHHHHHH-HhCCCeEEEEEeecC-CHHHHHHHHHHHHhcCCCE
Q 011276 6 YRTPTIAVLSTGD----ELVEPTTQCLDRGQIRDSNRAMLLAAA-MQQHCKLIDLGIVRD-DEEELEKTLDNAFSAGIDI 79 (489)
Q Consensus 6 ~r~prV~iistGd----El~~~g~~~~~~g~i~dsn~~~l~a~l-~~~G~~~~~~~~v~D-d~~~i~~~l~~~~~~~~Dl 79 (489)
.+|++|.-+-++. ++ .+.|+..+.+..+| .. +.+.....+-| .-++..+.+++... ++|+
T Consensus 4 ~~~~~v~wl~~~~C~GC~i-----------sll~~~~p~~~~ll~~~--i~i~~~~s~~~~~g~~a~~~~~~~~~-~~di 69 (264)
T 1yq9_A 4 KKRPSVVYLHNAECTGCSE-----------SVLRTVDPYVDELILDV--ISMDYHETLMAGAGHAVEEALHEAIK-GDFV 69 (264)
T ss_dssp CCSCEEEEEECBCCSHHHH-----------HHHTCTTTTHHHHHHHT--CEEEECTTTCSSCTHHHHHHHHHHTT-SSEE
T ss_pred CCCCcEEEEeCCccCchHH-----------HHHhcCCcCHHHHHhhh--eeeEecCChhhhcchhHHHHHhhhcc-CCeE
Confidence 3577777776652 11 23355556666664 55 44544433322 22455566666665 5899
Q ss_pred EEEeCCCcCCC
Q 011276 80 LLTSGGVSMGD 90 (489)
Q Consensus 80 vittGG~s~G~ 90 (489)
+|.+|++....
T Consensus 70 liVeGsV~~~~ 80 (264)
T 1yq9_A 70 CVIEGGIPMGD 80 (264)
T ss_dssp EEEESBEECGG
T ss_pred EEEeCCcccCC
Confidence 99999998875
No 228
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=20.64 E-value=2e+02 Score=29.26 Aligned_cols=65 Identities=12% Similarity=0.050 Sum_probs=41.1
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHH----------HHHhhhcCCCc
Q 011276 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEV----------LRRWSDIDKMD 357 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~----------l~~~~~~~~~D 357 (489)
+..+|+|+-..-.=-...++++-+..+.+.|.+. |++|..+--.-+ ++.++. +.++++ ++|
T Consensus 317 ~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~-----g~~v~~~DP~~~--~~~~~~~~~~~~~~~~~~~~~~--~ad 387 (450)
T 3gg2_A 317 QGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEV-----GCRVRVYDPVAM--KEAQKRLGDKVEYTTDMYDAVR--GAE 387 (450)
T ss_dssp TTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT-----TCEEEEECSSCH--HHHHHHHGGGSEECSSHHHHTT--TCS
T ss_pred CCCEEEEEeeeeCCCCcccccChHHHHHHHHHHC-----CCEEEEECCCCc--HHHHHhcCccceecCCHHHHhc--CCC
Confidence 4457887754433234567788888888999988 998887765443 222222 234444 788
Q ss_pred EEEE
Q 011276 358 LILT 361 (489)
Q Consensus 358 lVIt 361 (489)
+||.
T Consensus 388 ~~vi 391 (450)
T 3gg2_A 388 ALFH 391 (450)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 7776
No 229
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=20.58 E-value=1.7e+02 Score=27.07 Aligned_cols=47 Identities=15% Similarity=-0.019 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCeEEEEEeec-CCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011276 39 AMLLAAAMQQHCKLIDLGIVR-DDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~-Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
.-+...+++.|+++.....-. +|.+.-.+.++.++.+++|-||+.+.
T Consensus 23 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 70 (297)
T 3rot_A 23 QGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP 70 (297)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC
T ss_pred HHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 345567888999987554211 48888889999988878999998764
No 230
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=20.44 E-value=1.8e+02 Score=27.01 Aligned_cols=46 Identities=7% Similarity=0.076 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCC---eEEE-EEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011276 39 AMLLAAAMQQHC---KLID-LGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 39 ~~l~a~l~~~G~---~~~~-~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
.-+...+++.|+ .+.. +.-...|++...+.++...+++.|.||++|
T Consensus 21 ~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~ 70 (295)
T 3lft_A 21 KGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIA 70 (295)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEES
T ss_pred HHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 345667889999 6543 334567788888888888776799999986
No 231
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=20.41 E-value=2.8e+02 Score=25.77 Aligned_cols=50 Identities=8% Similarity=-0.022 Sum_probs=31.8
Q ss_pred CchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCC
Q 011276 309 RSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRD 371 (489)
Q Consensus 309 ~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D 371 (489)
.|-..+..+|++. |+++..+..-.++. + -..++ ++|.||.+||-+...+|
T Consensus 15 e~~~~i~~~l~~~-----G~~v~v~~~~~~~~--~----p~~~~--~~d~lIl~GGp~~~~d~ 64 (250)
T 3m3p_A 15 EGPGHFGDFLAGE-----HIPFQVLRMDRSDP--L----PAEIR--DCSGLAMMGGPMSANDD 64 (250)
T ss_dssp CCCHHHHHHHHHT-----TCCEEEEEGGGTCC--C----CSCGG--GSSEEEECCCSSCTTSC
T ss_pred CCHHHHHHHHHHC-----CCeEEEEeccCCCc--C----cCccc--cCCEEEECCCCCccccc
Confidence 3446788889998 99887766433321 0 01123 69999999987644443
No 232
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=20.37 E-value=2.5e+02 Score=27.44 Aligned_cols=12 Identities=17% Similarity=0.545 Sum_probs=8.4
Q ss_pred CCCEEEEeCCCc
Q 011276 76 GIDILLTSGGVS 87 (489)
Q Consensus 76 ~~DlvittGG~s 87 (489)
+||+||+++|+.
T Consensus 89 daDiVIitaG~p 100 (330)
T 3ldh_A 89 GSKLVVITAGAR 100 (330)
T ss_dssp SCSEEEECCSCC
T ss_pred CCCEEEEeCCCC
Confidence 567777777763
No 233
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=20.30 E-value=1.5e+02 Score=27.35 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=51.8
Q ss_pred EEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCCh
Q 011276 294 ILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVT 373 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T 373 (489)
|+.||=+=..|...|. ++.+++.|... .+.|+++ ....+|-+.....+.+.++++..+.|+||..|=.| +..+++
T Consensus 4 VLvTGF~PF~~~~~NP-S~~~v~~L~~~--~~~~~~i-~~~~lPv~~~~~~~~l~~~i~~~~Pd~Vi~vG~ag-gr~~i~ 78 (220)
T 1a2z_A 4 VLITGFEPFGGDSKNP-TEQIAKYFDRK--QIGNAMV-YGRVLPVSVKRATIELKRYLEEIKPEIVINLGLAP-TYSNIT 78 (220)
T ss_dssp EEEEEECCCTTCSCCH-HHHHHHHHTTC--EETTEEE-EEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECT-TCSSEE
T ss_pred EEEeeccCCCCCCCCc-HHHHHHHhhcc--cCCCeEE-EEEEEEeEHHHHHHHHHHHHHHhCCCEEEEecCCC-CCceEE
Confidence 6777776665544333 34455666654 1236554 45688999988888888888655789999998433 455666
Q ss_pred HHHH
Q 011276 374 PEAT 377 (489)
Q Consensus 374 ~eav 377 (489)
.|-+
T Consensus 79 lEr~ 82 (220)
T 1a2z_A 79 VERI 82 (220)
T ss_dssp EECE
T ss_pred EEEE
Confidence 5544
No 234
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=20.19 E-value=3.7e+02 Score=25.66 Aligned_cols=57 Identities=7% Similarity=0.043 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHH------HHHHHHhcCCCEEEEeCCCcCCCCCch
Q 011276 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEK------TLDNAFSAGIDILLTSGGVSMGDKDFV 94 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~------~l~~~~~~~~DlvittGG~s~G~~D~~ 94 (489)
.-|..++..++.+|+++..+..-++. +...+ .+.+++. ++|+|++.=-.....++++
T Consensus 152 ~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~l~ell~-~aDvV~l~~p~~~~t~~li 214 (307)
T 1wwk_A 152 RIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKFVDLETLLK-ESDVVTIHVPLVESTYHLI 214 (307)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEECCHHHHHH-HCSEEEECCCCSTTTTTCB
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCccccCHHHHHh-hCCEEEEecCCChHHhhhc
Confidence 35677888899999999887765543 22211 2556665 4899998755544444444
No 235
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=20.12 E-value=2.1e+02 Score=29.60 Aligned_cols=64 Identities=8% Similarity=0.008 Sum_probs=41.0
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCC--CHHHHHHHHHHhhhcCCCcEEEEeC
Q 011276 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPD--DVGKIKEVLRRWSDIDKMDLILTLG 363 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~D--d~~~I~~~l~~~~~~~~~DlVIttG 363 (489)
-+|++|...|.- |+ .....+.+.+++. |+.+.....++. +...+...+.++....++|+||..|
T Consensus 187 ~~V~ii~~d~~~--g~---~~~~~~~~~~~~~-----gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~ 252 (555)
T 2e4u_A 187 TYVSTVASEGDY--GE---TGIEAFEQEARLR-----NICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFM 252 (555)
T ss_dssp CEEEEEEESSTT--HH---HHHHHHHHHHHTT-----TCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred eEEEEEEeeChH--HH---HHHHHHHHHHHHC-----CccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEc
Confidence 368888765431 11 1123445566666 888888777773 5667777777765324789998876
No 236
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=20.07 E-value=2.3e+02 Score=25.84 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011276 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
-+...+++.|+++... ...+|++.-.+.++.++.+++|-||..+.
T Consensus 23 gi~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (290)
T 2fn9_A 23 TAKQRAEQLGYEATIF-DSQNDTAKESAHFDAIIAAGYDAIIFNPT 67 (290)
T ss_dssp HHHHHHHHTTCEEEEE-ECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHcCCEEEEe-CCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3456778899988754 34567777777888877767999998764
No 237
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=20.01 E-value=47 Score=30.85 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHhcC---CCEEEEeCCCcCCCCCchHHHHHhcC-CeEEeeee
Q 011276 59 RDDEEELEKTLDNAFSAG---IDILLTSGGVSMGDKDFVKPLLQKKG-TIYFNKVC 110 (489)
Q Consensus 59 ~Dd~~~i~~~l~~~~~~~---~DlvittGG~s~G~~D~~~~~l~~~G-~~~f~~v~ 110 (489)
+||..++++.|.+=.. . .|+|++=||- |.-....++|+++| .+-+-+++
T Consensus 65 ~DDya~m~Evl~RR~~-r~~~PDLiliDGGk--gQl~~a~~vl~~lg~~i~v~gla 117 (220)
T 2nrt_A 65 PDDYESIRTVVKRRYS-KHPLPNLLFVDGGI--GQVNAAIEALKEIGKDCPVVGLA 117 (220)
T ss_dssp CCHHHHHHHHHHHHHT-TSCCCSEEEESSSH--HHHHHHHHHHHHTTCCCCEEEEC
T ss_pred CCHHHHHHHHHHHHhc-cCCCCCEEEEeCCH--HHHHHHHHHHHHcCCCCeEEEEE
Done!