Query 011277
Match_columns 489
No_of_seqs 243 out of 2794
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 23:34:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569 Permease of the major 100.0 1.5E-50 3.3E-55 392.4 43.2 435 50-486 10-470 (485)
2 KOG0254 Predicted transporter 100.0 8.8E-45 1.9E-49 369.4 43.2 439 49-487 43-500 (513)
3 TIGR00887 2A0109 phosphate:H+ 100.0 1.1E-43 2.4E-48 361.3 35.6 428 49-484 14-502 (502)
4 PRK10077 xylE D-xylose transpo 100.0 5.3E-42 1.2E-46 348.2 43.8 429 50-487 11-474 (479)
5 TIGR01299 synapt_SV2 synaptic 100.0 1E-41 2.2E-46 351.9 34.3 417 47-478 163-741 (742)
6 PF00083 Sugar_tr: Sugar (and 100.0 4.3E-48 9.3E-53 389.7 -20.7 430 56-485 5-451 (451)
7 TIGR00879 SP MFS transporter, 100.0 2.9E-38 6.3E-43 320.5 42.1 431 50-481 27-481 (481)
8 KOG0252 Inorganic phosphate tr 100.0 4E-40 8.8E-45 306.6 18.5 430 46-487 37-514 (538)
9 TIGR00898 2A0119 cation transp 100.0 2.8E-37 6.1E-42 315.5 32.0 390 72-480 110-504 (505)
10 PRK10642 proline/glycine betai 100.0 5.9E-36 1.3E-40 303.5 36.5 396 52-478 17-437 (490)
11 KOG0253 Synaptic vesicle trans 100.0 4E-35 8.7E-40 265.1 28.7 387 74-478 101-527 (528)
12 PRK10406 alpha-ketoglutarate t 100.0 1.1E-33 2.5E-38 282.6 33.7 382 52-478 23-430 (432)
13 KOG0255 Synaptic vesicle trans 100.0 1.7E-32 3.8E-37 280.7 35.7 379 87-481 117-503 (521)
14 PRK09952 shikimate transporter 100.0 3.4E-32 7.4E-37 272.0 33.6 385 51-475 22-437 (438)
15 COG2814 AraJ Arabinose efflux 100.0 6.1E-32 1.3E-36 255.0 30.6 364 52-467 14-383 (394)
16 PRK12307 putative sialic acid 100.0 1.2E-31 2.5E-36 268.2 34.0 390 52-474 19-413 (426)
17 PRK03545 putative arabinose tr 100.0 6.8E-31 1.5E-35 259.4 33.3 367 53-471 11-381 (390)
18 PRK11663 regulatory protein Uh 100.0 1.2E-31 2.7E-36 268.0 28.3 397 54-478 26-432 (434)
19 TIGR02332 HpaX 4-hydroxyphenyl 100.0 2.1E-31 4.5E-36 264.2 28.3 385 52-458 9-409 (412)
20 PRK15075 citrate-proton sympor 100.0 2.8E-30 6E-35 258.3 36.1 387 52-482 16-431 (434)
21 TIGR00903 2A0129 major facilit 100.0 7.5E-31 1.6E-35 255.0 29.7 348 69-466 9-361 (368)
22 PRK09705 cynX putative cyanate 100.0 3.2E-30 6.9E-35 254.4 33.8 374 52-478 11-389 (393)
23 TIGR00891 2A0112 putative sial 100.0 1.3E-30 2.9E-35 258.7 30.6 380 51-451 12-397 (405)
24 PRK11551 putative 3-hydroxyphe 100.0 4.9E-30 1.1E-34 254.8 33.3 371 50-466 14-392 (406)
25 PRK09556 uhpT sugar phosphate 100.0 2.6E-31 5.6E-36 268.2 24.4 387 55-466 33-445 (467)
26 PRK14995 methyl viologen resis 100.0 8.2E-30 1.8E-34 258.8 31.3 378 51-444 6-412 (495)
27 TIGR00893 2A0114 d-galactonate 100.0 2.1E-30 4.6E-35 256.2 25.3 380 65-466 8-395 (399)
28 PRK03893 putative sialic acid 100.0 4.7E-29 1E-33 254.4 28.9 397 52-459 21-442 (496)
29 COG2271 UhpC Sugar phosphate p 100.0 4.8E-30 1E-34 238.6 18.8 379 68-469 46-433 (448)
30 PRK11273 glpT sn-glycerol-3-ph 100.0 1.6E-28 3.5E-33 246.8 30.9 382 70-481 48-445 (452)
31 PRK05122 major facilitator sup 100.0 3.2E-28 6.9E-33 241.2 31.6 372 53-480 17-398 (399)
32 PRK10504 putative transporter; 100.0 2E-28 4.3E-33 248.0 30.3 383 53-448 12-418 (471)
33 TIGR00890 2A0111 Oxalate/Forma 100.0 5.9E-29 1.3E-33 244.3 25.3 349 69-462 21-374 (377)
34 PRK10489 enterobactin exporter 100.0 5.9E-29 1.3E-33 247.8 24.9 377 62-484 28-413 (417)
35 TIGR00711 efflux_EmrB drug res 100.0 8.1E-29 1.8E-33 252.0 25.7 377 53-444 4-409 (485)
36 PRK10091 MFS transport protein 100.0 1.5E-27 3.1E-32 234.8 30.3 361 54-466 6-372 (382)
37 TIGR00895 2A0115 benzoate tran 100.0 1.7E-27 3.6E-32 235.8 30.5 375 52-441 18-396 (398)
38 PRK15402 multidrug efflux syst 100.0 2.9E-27 6.3E-32 234.8 31.8 357 50-448 12-373 (406)
39 TIGR00712 glpT glycerol-3-phos 100.0 5E-28 1.1E-32 242.4 26.4 388 62-475 38-438 (438)
40 PRK15403 multidrug efflux syst 100.0 3.5E-27 7.5E-32 234.0 31.5 368 53-463 18-390 (413)
41 PRK03633 putative MFS family t 100.0 1.1E-26 2.4E-31 228.5 34.5 361 52-468 7-370 (381)
42 PRK10213 nepI ribonucleoside t 100.0 1.5E-26 3.4E-31 228.0 33.9 360 55-466 24-387 (394)
43 TIGR00900 2A0121 H+ Antiporter 100.0 1.8E-27 3.8E-32 232.8 26.5 352 58-447 6-365 (365)
44 TIGR00881 2A0104 phosphoglycer 100.0 1.9E-28 4.1E-33 240.8 19.7 365 64-451 8-378 (379)
45 PLN00028 nitrate transmembrane 100.0 4.8E-27 1E-31 237.1 29.8 366 61-466 46-429 (476)
46 PRK12382 putative transporter; 100.0 2.1E-26 4.6E-31 227.6 32.4 356 58-468 22-387 (392)
47 TIGR00883 2A0106 metabolite-pr 100.0 7.4E-27 1.6E-31 230.8 28.4 352 63-452 5-383 (394)
48 PRK03699 putative transporter; 100.0 1.9E-26 4.1E-31 227.9 31.0 361 53-464 9-374 (394)
49 TIGR00710 efflux_Bcr_CflA drug 100.0 9.9E-27 2.1E-31 229.4 29.0 344 54-440 8-356 (385)
50 PRK10473 multidrug efflux syst 100.0 2.3E-26 5.1E-31 227.3 30.1 341 64-457 16-361 (392)
51 TIGR00894 2A0114euk Na(+)-depe 100.0 2.8E-27 6.1E-32 239.1 23.7 360 80-466 70-446 (465)
52 KOG1330 Sugar transporter/spin 100.0 2.4E-28 5.2E-33 229.4 13.2 370 46-445 28-412 (493)
53 cd06174 MFS The Major Facilita 100.0 4.1E-26 9E-31 221.7 29.2 340 56-466 4-348 (352)
54 PRK09874 drug efflux system pr 100.0 5.5E-26 1.2E-30 225.9 30.6 374 54-470 17-398 (408)
55 TIGR00899 2A0120 sugar efflux 100.0 7.7E-26 1.7E-30 222.3 30.7 358 59-466 5-370 (375)
56 PRK11195 lysophospholipid tran 100.0 1.1E-25 2.3E-30 221.9 29.6 365 56-463 8-373 (393)
57 PRK15034 nitrate/nitrite trans 100.0 3.7E-25 8.1E-30 216.7 32.9 351 67-464 50-448 (462)
58 PRK11043 putative transporter; 99.9 1.9E-25 4.2E-30 221.4 30.6 339 61-445 16-357 (401)
59 PF07690 MFS_1: Major Facilita 99.9 1E-26 2.2E-31 226.3 19.9 346 58-436 3-352 (352)
60 TIGR00897 2A0118 polyol permea 99.9 8.2E-25 1.8E-29 216.7 33.5 364 61-465 23-396 (402)
61 TIGR00892 2A0113 monocarboxyla 99.9 3E-26 6.6E-31 230.0 23.0 372 68-464 36-415 (455)
62 PRK11010 ampG muropeptide tran 99.9 3.6E-25 7.7E-30 223.9 29.9 370 56-467 17-400 (491)
63 PRK11102 bicyclomycin/multidru 99.9 2.8E-25 6E-30 218.5 27.8 325 66-432 6-335 (377)
64 PRK10133 L-fucose transporter; 99.9 6.1E-25 1.3E-29 219.1 29.7 363 54-464 29-427 (438)
65 TIGR00886 2A0108 nitrite extru 99.9 1.8E-25 3.9E-30 218.9 23.0 337 65-431 15-365 (366)
66 PRK11652 emrD multidrug resist 99.9 1.1E-24 2.5E-29 215.4 28.3 339 57-442 14-357 (394)
67 PRK08633 2-acyl-glycerophospho 99.9 3E-24 6.5E-29 240.6 30.3 333 75-440 34-379 (1146)
68 COG2223 NarK Nitrate/nitrite t 99.9 6.9E-24 1.5E-28 198.1 26.3 356 69-467 32-398 (417)
69 TIGR00896 CynX cyanate transpo 99.9 7.3E-24 1.6E-28 206.6 27.9 329 68-448 17-351 (355)
70 KOG2533 Permease of the major 99.9 9.5E-25 2.1E-29 215.7 21.6 281 56-356 50-348 (495)
71 PRK11646 multidrug resistance 99.9 1.7E-23 3.6E-28 206.9 29.4 356 59-465 18-383 (400)
72 PRK10054 putative transporter; 99.9 6.9E-24 1.5E-28 209.2 25.4 369 58-473 14-387 (395)
73 TIGR00885 fucP L-fucose:H+ sym 99.9 2.1E-23 4.4E-28 206.3 28.3 354 54-458 6-400 (410)
74 KOG2532 Permease of the major 99.9 9.9E-24 2.1E-28 208.1 24.4 358 83-465 68-442 (466)
75 PRK15011 sugar efflux transpor 99.9 9.3E-23 2E-27 201.4 31.1 362 58-473 22-393 (393)
76 TIGR00889 2A0110 nucleoside tr 99.9 9.6E-22 2.1E-26 195.1 31.6 370 61-477 12-409 (418)
77 PRK11902 ampG muropeptide tran 99.9 5.4E-22 1.2E-26 196.6 29.6 362 61-468 9-388 (402)
78 TIGR00902 2A0127 phenyl propri 99.9 6.8E-22 1.5E-26 194.5 29.9 357 58-466 11-375 (382)
79 PRK06814 acylglycerophosphoeth 99.9 3E-22 6.6E-27 223.8 28.9 342 89-458 53-410 (1140)
80 PRK09528 lacY galactoside perm 99.9 8.6E-22 1.9E-26 196.4 29.0 367 68-472 27-405 (420)
81 PRK11128 putative 3-phenylprop 99.9 6.6E-21 1.4E-25 187.5 30.1 350 64-465 17-374 (382)
82 PF06609 TRI12: Fungal trichot 99.9 2E-20 4.4E-25 187.1 32.9 358 69-443 62-465 (599)
83 TIGR00901 2A0125 AmpG-related 99.9 1.8E-21 3.9E-26 189.8 23.5 328 67-429 4-355 (356)
84 TIGR00882 2A0105 oligosacchari 99.9 1E-20 2.2E-25 187.2 28.9 366 60-465 11-390 (396)
85 TIGR00805 oat sodium-independe 99.9 2.6E-22 5.7E-27 207.5 16.8 298 55-365 37-413 (633)
86 PRK10207 dipeptide/tripeptide 99.9 8.5E-21 1.8E-25 191.1 26.4 138 76-216 40-181 (489)
87 TIGR00924 yjdL_sub1_fam amino 99.9 3E-20 6.6E-25 187.1 30.1 160 57-219 16-182 (475)
88 TIGR00792 gph sugar (Glycoside 99.9 2.8E-20 6E-25 186.8 26.1 333 75-448 24-383 (437)
89 TIGR00806 rfc RFC reduced fola 99.9 2E-20 4.4E-25 179.8 20.6 181 53-238 29-212 (511)
90 KOG2615 Permease of the major 99.9 5.7E-20 1.2E-24 168.5 22.2 143 87-232 67-217 (451)
91 PF05977 MFS_3: Transmembrane 99.9 1.6E-19 3.4E-24 181.5 27.3 371 68-478 27-403 (524)
92 TIGR02718 sider_RhtX_FptX side 99.8 8E-19 1.7E-23 173.3 28.4 368 56-465 6-386 (390)
93 KOG3764 Vesicular amine transp 99.8 1.2E-20 2.7E-25 173.8 13.9 348 76-464 94-448 (464)
94 COG0738 FucP Fucose permease [ 99.8 2.7E-18 5.9E-23 159.7 26.3 375 54-478 16-417 (422)
95 PTZ00207 hypothetical protein; 99.8 7.4E-18 1.6E-22 170.0 29.7 170 71-247 47-226 (591)
96 PRK09584 tppB putative tripept 99.8 1.3E-17 2.8E-22 169.1 29.0 159 58-219 28-191 (500)
97 TIGR00788 fbt folate/biopterin 99.8 1.4E-17 3E-22 167.4 22.0 373 55-447 30-415 (468)
98 KOG2504 Monocarboxylate transp 99.8 1.1E-17 2.4E-22 167.4 19.1 381 62-463 58-469 (509)
99 TIGR01301 GPH_sucrose GPH fami 99.8 3.9E-16 8.4E-21 154.5 29.7 380 71-475 24-476 (477)
100 COG2807 CynX Cyanate permease 99.7 4.9E-15 1.1E-19 136.1 29.6 353 63-467 24-382 (395)
101 PRK09669 putative symporter Ya 99.7 7E-16 1.5E-20 154.9 24.8 330 76-448 35-391 (444)
102 PF03825 Nuc_H_symport: Nucleo 99.7 5.9E-15 1.3E-19 144.3 29.3 341 67-450 18-369 (400)
103 PRK15462 dipeptide/tripeptide 99.7 1.9E-14 4.2E-19 143.1 31.9 145 70-217 28-177 (493)
104 PF11700 ATG22: Vacuole efflux 99.7 4.9E-14 1.1E-18 140.5 30.8 356 90-477 72-474 (477)
105 PRK09848 glucuronide transport 99.7 1.1E-14 2.4E-19 146.5 26.2 328 76-448 34-391 (448)
106 PRK10429 melibiose:sodium symp 99.7 3.8E-15 8.2E-20 150.7 21.7 335 79-448 35-396 (473)
107 PF13347 MFS_2: MFS/sugar tran 99.7 3.4E-14 7.4E-19 142.0 26.9 331 77-447 28-386 (428)
108 KOG2563 Permease of the major 99.6 4.6E-13 9.9E-18 126.6 28.7 398 44-479 38-459 (480)
109 KOG4686 Predicted sugar transp 99.6 9.5E-15 2E-19 128.9 15.8 358 76-466 69-439 (459)
110 PRK11462 putative transporter; 99.6 1.7E-13 3.8E-18 137.7 27.4 325 79-447 38-389 (460)
111 PRK10642 proline/glycine betai 99.6 2.1E-15 4.7E-20 153.2 13.5 179 71-252 270-458 (490)
112 TIGR01272 gluP glucose/galacto 99.6 1.7E-13 3.7E-18 130.2 20.0 275 135-456 4-301 (310)
113 PF01306 LacY_symp: LacY proto 99.6 4.8E-14 1E-18 135.5 14.3 370 67-476 23-406 (412)
114 COG2211 MelB Na+/melibiose sym 99.6 3E-12 6.5E-17 124.3 26.3 330 81-448 43-399 (467)
115 KOG2325 Predicted transporter/ 99.5 5.8E-13 1.3E-17 129.6 17.5 146 52-198 35-186 (488)
116 COG2270 Permeases of the major 99.5 4E-11 8.7E-16 113.1 25.7 350 88-477 58-435 (438)
117 TIGR00880 2_A_01_02 Multidrug 99.5 1.8E-13 3.9E-18 113.9 7.9 135 95-230 5-140 (141)
118 TIGR01299 synapt_SV2 synaptic 99.4 2.5E-12 5.3E-17 134.2 11.4 139 92-232 599-737 (742)
119 COG3104 PTR2 Dipeptide/tripept 99.3 3.2E-10 7E-15 109.5 21.9 140 81-223 56-200 (498)
120 PRK15011 sugar efflux transpor 99.3 4.4E-11 9.4E-16 118.3 14.2 154 73-230 238-392 (393)
121 cd06174 MFS The Major Facilita 99.3 5.7E-11 1.2E-15 115.1 14.1 154 68-224 192-347 (352)
122 KOG0569 Permease of the major 99.3 1.2E-10 2.7E-15 114.3 16.3 223 2-231 215-457 (485)
123 KOG2816 Predicted transporter 99.3 1.4E-09 3E-14 107.6 23.8 312 98-444 72-391 (463)
124 TIGR00890 2A0111 Oxalate/Forma 99.3 2.6E-11 5.7E-16 118.9 11.5 142 74-218 228-371 (377)
125 PRK05122 major facilitator sup 99.3 4.7E-11 1E-15 118.4 13.3 150 73-227 238-387 (399)
126 TIGR00889 2A0110 nucleoside tr 99.3 2.6E-11 5.6E-16 120.6 10.9 143 89-231 252-405 (418)
127 PRK11551 putative 3-hydroxyphe 99.3 7.5E-11 1.6E-15 117.2 13.8 152 73-226 242-393 (406)
128 PRK12382 putative transporter; 99.2 9.6E-11 2.1E-15 115.9 12.6 146 73-223 238-383 (392)
129 TIGR00892 2A0113 monocarboxyla 99.2 1.4E-10 2.9E-15 116.9 11.4 150 69-220 259-412 (455)
130 TIGR00887 2A0109 phosphate:H+ 99.2 4.9E-10 1.1E-14 114.5 15.4 159 73-231 310-491 (502)
131 PRK09528 lacY galactoside perm 99.2 1.3E-10 2.7E-15 116.1 10.4 132 88-220 262-394 (420)
132 PRK10054 putative transporter; 99.2 1.3E-09 2.8E-14 107.7 17.0 148 317-474 36-186 (395)
133 PF03209 PUCC: PUCC protein; 99.1 9.9E-08 2.1E-12 90.7 28.2 327 78-444 7-362 (403)
134 PRK10077 xylE D-xylose transpo 99.1 8E-10 1.7E-14 112.4 15.5 158 71-231 291-460 (479)
135 PRK09874 drug efflux system pr 99.1 3.5E-10 7.6E-15 112.4 11.7 134 90-224 260-393 (408)
136 PF03137 OATP: Organic Anion T 99.1 8.3E-12 1.8E-16 126.4 -0.2 176 54-231 6-252 (539)
137 TIGR00883 2A0106 metabolite-pr 99.1 2.7E-10 5.9E-15 112.4 9.5 143 70-214 238-386 (394)
138 PF03092 BT1: BT1 family; Int 99.1 1.4E-08 2.9E-13 101.1 21.0 153 74-230 13-177 (433)
139 PRK10213 nepI ribonucleoside t 99.1 8.1E-09 1.8E-13 102.0 19.1 154 313-475 44-200 (394)
140 TIGR00899 2A0120 sugar efflux 99.1 1.2E-09 2.7E-14 107.1 12.9 147 78-228 227-373 (375)
141 TIGR00893 2A0114 d-galactonate 99.1 1.5E-09 3.3E-14 107.0 12.9 160 58-220 222-390 (399)
142 PRK09556 uhpT sugar phosphate 99.1 1.4E-09 3E-14 110.1 12.8 148 70-220 277-440 (467)
143 PRK03893 putative sialic acid 99.1 1.2E-09 2.7E-14 111.5 12.5 140 71-213 295-437 (496)
144 PRK11663 regulatory protein Uh 99.1 1.7E-08 3.7E-13 101.2 20.1 155 310-473 44-201 (434)
145 TIGR00902 2A0127 phenyl propri 99.1 2.5E-09 5.5E-14 105.3 13.9 133 70-205 224-357 (382)
146 TIGR00898 2A0119 cation transp 99.0 9.4E-10 2E-14 112.7 11.2 133 96-231 363-497 (505)
147 TIGR00710 efflux_Bcr_CflA drug 99.0 8.5E-09 1.8E-13 101.5 17.5 155 313-476 29-186 (385)
148 PRK15403 multidrug efflux syst 99.0 8E-09 1.7E-13 102.7 17.3 153 314-475 41-196 (413)
149 PRK03633 putative MFS family t 99.0 1.6E-09 3.5E-14 106.7 12.0 144 72-221 221-364 (381)
150 TIGR02332 HpaX 4-hydroxyphenyl 99.0 1.5E-08 3.2E-13 100.8 19.0 155 312-475 31-194 (412)
151 PRK09705 cynX putative cyanate 99.0 3.1E-09 6.6E-14 105.1 13.7 158 70-231 224-384 (393)
152 TIGR00879 SP MFS transporter, 99.0 3.9E-09 8.4E-14 107.0 14.7 161 68-231 301-473 (481)
153 PLN00028 nitrate transmembrane 99.0 2.4E-08 5.3E-13 101.1 20.0 150 311-470 58-219 (476)
154 PRK03699 putative transporter; 99.0 2E-09 4.4E-14 106.4 11.7 149 71-223 225-374 (394)
155 PRK10473 multidrug efflux syst 99.0 1.2E-08 2.6E-13 100.8 17.2 158 310-476 24-184 (392)
156 TIGR00895 2A0115 benzoate tran 99.0 9.7E-09 2.1E-13 101.5 16.4 156 310-474 38-196 (398)
157 PRK10489 enterobactin exporter 99.0 2.4E-09 5.2E-14 106.8 12.0 158 71-231 243-402 (417)
158 PRK03545 putative arabinose tr 99.0 2.8E-08 6E-13 98.2 18.7 154 312-474 32-188 (390)
159 TIGR00903 2A0129 major facilit 99.0 1.7E-08 3.7E-13 98.5 16.8 152 313-474 15-169 (368)
160 KOG3626 Organic anion transpor 99.0 8.5E-09 1.8E-13 105.0 14.6 281 53-350 99-458 (735)
161 TIGR00711 efflux_EmrB drug res 99.0 8.1E-09 1.7E-13 105.2 14.7 157 311-476 24-183 (485)
162 TIGR00900 2A0121 H+ Antiporter 99.0 2.4E-08 5.2E-13 97.4 17.2 140 323-466 36-175 (365)
163 TIGR00891 2A0112 putative sial 99.0 4.1E-09 8.9E-14 104.5 11.8 138 74-213 261-400 (405)
164 PRK14995 methyl viologen resis 99.0 2.5E-08 5.3E-13 101.7 17.4 156 312-476 29-188 (495)
165 PRK09952 shikimate transporter 99.0 8.8E-09 1.9E-13 103.3 13.7 152 78-231 278-435 (438)
166 PRK15402 multidrug efflux syst 98.9 4.6E-08 1E-12 97.2 18.2 153 314-475 38-193 (406)
167 TIGR00897 2A0118 polyol permea 98.9 1.1E-08 2.3E-13 101.5 13.6 150 71-225 242-397 (402)
168 TIGR00886 2A0108 nitrite extru 98.9 4.7E-08 1E-12 95.6 17.8 149 315-472 28-190 (366)
169 PRK12307 putative sialic acid 98.9 4.1E-08 9E-13 98.2 17.6 154 311-474 40-196 (426)
170 TIGR00880 2_A_01_02 Multidrug 98.9 6.7E-09 1.4E-13 86.0 10.0 136 329-473 6-141 (141)
171 PRK15462 dipeptide/tripeptide 98.9 2.7E-08 5.9E-13 99.4 15.8 137 319-463 40-182 (493)
172 PRK11646 multidrug resistance 98.9 4E-08 8.7E-13 97.3 16.7 147 317-473 39-188 (400)
173 PF11700 ATG22: Vacuole efflux 98.9 1.2E-08 2.5E-13 102.2 12.7 151 78-230 309-469 (477)
174 COG2814 AraJ Arabinose efflux 98.9 7.8E-08 1.7E-12 92.0 17.6 152 311-471 35-189 (394)
175 PRK11273 glpT sn-glycerol-3-ph 98.9 9.4E-08 2E-12 96.3 19.1 157 311-473 51-211 (452)
176 PRK10091 MFS transport protein 98.9 6.2E-08 1.3E-12 95.4 17.3 154 313-475 27-183 (382)
177 PRK11652 emrD multidrug resist 98.9 5.1E-08 1.1E-12 96.5 16.6 155 313-476 32-189 (394)
178 COG2271 UhpC Sugar phosphate p 98.9 3.6E-08 7.8E-13 93.3 14.4 159 313-480 53-219 (448)
179 PF01770 Folate_carrier: Reduc 98.9 6.1E-07 1.3E-11 86.4 22.6 180 53-236 7-189 (412)
180 PRK10504 putative transporter; 98.9 1E-07 2.2E-12 96.7 18.7 154 311-473 32-188 (471)
181 PRK10406 alpha-ketoglutarate t 98.9 4.5E-08 9.9E-13 98.0 15.6 143 330-475 72-223 (432)
182 PF07690 MFS_1: Major Facilita 98.9 9.8E-09 2.1E-13 99.7 10.3 150 314-472 22-174 (352)
183 PRK11128 putative 3-phenylprop 98.9 4E-08 8.7E-13 96.8 14.0 131 73-206 227-358 (382)
184 PRK11102 bicyclomycin/multidru 98.8 6.8E-08 1.5E-12 94.9 15.5 152 314-474 16-170 (377)
185 TIGR00712 glpT glycerol-3-phos 98.8 1.1E-07 2.4E-12 95.5 16.7 146 323-473 63-209 (438)
186 TIGR00881 2A0104 phosphoglycer 98.8 3.4E-08 7.3E-13 96.9 12.3 153 313-474 19-175 (379)
187 PRK11195 lysophospholipid tran 98.8 1.2E-07 2.5E-12 93.8 15.8 137 324-474 41-177 (393)
188 PF05631 DUF791: Protein of un 98.8 9.9E-07 2.1E-11 82.6 20.5 110 53-169 40-150 (354)
189 PRK15075 citrate-proton sympor 98.8 7.5E-08 1.6E-12 96.5 14.2 134 70-205 257-396 (434)
190 PF05977 MFS_3: Transmembrane 98.8 4E-08 8.6E-13 99.5 12.2 144 70-216 237-381 (524)
191 TIGR00882 2A0105 oligosacchari 98.8 2.5E-08 5.5E-13 98.7 10.7 134 89-223 255-389 (396)
192 TIGR00792 gph sugar (Glycoside 98.8 6.8E-08 1.5E-12 97.0 13.4 112 89-200 258-377 (437)
193 KOG2615 Permease of the major 98.8 2.8E-08 6.1E-13 92.4 9.4 112 323-444 70-181 (451)
194 PF00083 Sugar_tr: Sugar (and 98.8 1.6E-10 3.5E-15 116.5 -6.3 154 73-231 275-439 (451)
195 COG2270 Permeases of the major 98.8 3.4E-08 7.4E-13 93.6 9.4 173 54-230 257-430 (438)
196 PRK10207 dipeptide/tripeptide 98.8 3.3E-07 7.2E-12 92.8 17.1 120 330-457 59-181 (489)
197 PRK11043 putative transporter; 98.8 3.2E-07 6.9E-12 91.0 16.7 145 315-468 32-179 (401)
198 TIGR00924 yjdL_sub1_fam amino 98.7 1.9E-07 4.1E-12 94.5 14.7 130 323-462 50-184 (475)
199 KOG0253 Synaptic vesicle trans 98.7 7E-08 1.5E-12 89.3 10.1 99 100-198 393-491 (528)
200 PRK09584 tppB putative tripept 98.7 7.4E-07 1.6E-11 90.7 17.8 116 336-459 72-190 (500)
201 TIGR00894 2A0114euk Na(+)-depe 98.7 1.8E-07 4E-12 94.7 12.9 143 323-472 78-221 (465)
202 KOG3098 Uncharacterized conser 98.7 2E-05 4.3E-10 77.3 25.7 102 94-196 56-157 (461)
203 TIGR00896 CynX cyanate transpo 98.7 9.6E-08 2.1E-12 93.1 9.9 134 72-208 218-353 (355)
204 PTZ00207 hypothetical protein; 98.7 3.3E-06 7.2E-11 86.2 20.9 152 309-465 47-200 (591)
205 PRK06814 acylglycerophosphoeth 98.7 6.9E-07 1.5E-11 100.8 17.8 142 325-473 56-197 (1140)
206 PRK15034 nitrate/nitrite trans 98.7 1.3E-06 2.8E-11 86.6 17.3 155 324-483 73-247 (462)
207 COG0477 ProP Permeases of the 98.7 2.5E-07 5.3E-12 87.5 12.1 154 62-216 13-172 (338)
208 TIGR00885 fucP L-fucose:H+ sym 98.7 1E-06 2.2E-11 87.4 16.8 155 313-473 27-211 (410)
209 PRK11010 ampG muropeptide tran 98.6 2.6E-07 5.7E-12 93.9 12.7 152 76-230 248-404 (491)
210 TIGR00901 2A0125 AmpG-related 98.6 1.4E-07 3E-12 91.9 10.1 116 70-187 228-355 (356)
211 TIGR02718 sider_RhtX_FptX side 98.6 2.6E-07 5.6E-12 91.3 11.7 144 74-220 231-382 (390)
212 KOG2504 Monocarboxylate transp 98.6 1.9E-07 4.1E-12 94.1 10.7 173 55-229 302-476 (509)
213 PRK08633 2-acyl-glycerophospho 98.6 2.2E-07 4.8E-12 104.9 12.5 128 73-201 254-382 (1146)
214 PRK09848 glucuronide transport 98.6 5.7E-07 1.2E-11 90.6 13.1 108 91-198 267-383 (448)
215 TIGR01272 gluP glucose/galacto 98.6 6.1E-07 1.3E-11 85.3 12.5 137 71-213 160-299 (310)
216 KOG1330 Sugar transporter/spin 98.6 3.3E-08 7.1E-13 94.5 3.5 159 316-483 63-222 (493)
217 KOG0254 Predicted transporter 98.5 3.1E-06 6.7E-11 86.7 17.1 157 70-231 314-486 (513)
218 PF06813 Nodulin-like: Nodulin 98.5 1.8E-06 4E-11 78.1 13.0 153 71-229 22-182 (250)
219 KOG3764 Vesicular amine transp 98.5 2.1E-07 4.6E-12 87.2 6.9 148 321-477 106-254 (464)
220 PF06609 TRI12: Fungal trichot 98.5 3.3E-06 7.2E-11 85.7 15.6 142 313-464 68-211 (599)
221 KOG0252 Inorganic phosphate tr 98.5 5E-07 1.1E-11 86.4 8.4 180 51-231 304-500 (538)
222 TIGR01301 GPH_sucrose GPH fami 98.4 8.6E-06 1.9E-10 81.3 16.9 160 315-475 30-223 (477)
223 PF13347 MFS_2: MFS/sugar tran 98.4 2.7E-06 5.8E-11 85.2 13.3 136 59-196 233-377 (428)
224 PF03825 Nuc_H_symport: Nucleo 98.4 1.9E-06 4.1E-11 84.7 11.2 150 54-205 210-366 (400)
225 KOG0255 Synaptic vesicle trans 98.4 3.1E-06 6.7E-11 87.0 13.4 136 324-473 121-257 (521)
226 COG2223 NarK Nitrate/nitrite t 98.4 2.3E-05 4.9E-10 74.7 17.4 149 317-473 42-199 (417)
227 PRK09669 putative symporter Ya 98.4 3.1E-06 6.8E-11 85.1 12.6 108 91-198 267-383 (444)
228 TIGR00805 oat sodium-independe 98.4 7E-06 1.5E-10 85.8 14.4 122 321-444 68-233 (633)
229 PRK10429 melibiose:sodium symp 98.4 4.3E-06 9.2E-11 84.8 12.5 108 90-197 268-387 (473)
230 PRK11902 ampG muropeptide tran 98.4 2.2E-05 4.7E-10 78.0 17.3 154 312-474 22-185 (402)
231 TIGR00806 rfc RFC reduced fola 98.3 5.8E-05 1.3E-09 74.0 18.0 129 312-451 49-181 (511)
232 PRK10133 L-fucose transporter; 98.3 8.6E-06 1.9E-10 81.6 12.2 131 79-214 288-418 (438)
233 COG2211 MelB Na+/melibiose sym 98.2 2E-05 4.4E-10 77.3 13.4 112 80-191 264-384 (467)
234 PF01306 LacY_symp: LacY proto 98.1 7.2E-06 1.6E-10 79.5 7.4 133 90-223 261-394 (412)
235 TIGR00926 2A1704 Peptide:H+ sy 98.0 0.0018 3.9E-08 67.6 24.2 140 79-221 16-174 (654)
236 KOG4332 Predicted sugar transp 98.0 6.8E-05 1.5E-09 66.8 11.1 73 103-178 87-160 (454)
237 PF05978 UNC-93: Ion channel r 98.0 6.4E-05 1.4E-09 62.8 10.3 104 93-197 42-145 (156)
238 TIGR00788 fbt folate/biopterin 98.0 3.8E-05 8.3E-10 77.6 10.6 149 80-230 282-447 (468)
239 COG0738 FucP Fucose permease [ 98.0 0.0003 6.4E-09 66.9 15.4 160 314-480 41-221 (422)
240 KOG2532 Permease of the major 98.0 0.00019 4.2E-09 71.7 15.0 153 323-482 75-232 (466)
241 PF06813 Nodulin-like: Nodulin 98.0 0.00024 5.3E-09 64.4 14.0 134 306-444 19-156 (250)
242 PF06779 DUF1228: Protein of u 97.9 4.1E-05 9E-10 56.1 6.8 74 69-144 10-83 (85)
243 KOG4686 Predicted sugar transp 97.9 7.9E-05 1.7E-09 67.0 9.8 125 77-205 291-416 (459)
244 COG3104 PTR2 Dipeptide/tripept 97.9 5.9E-05 1.3E-09 73.6 9.7 126 335-467 75-203 (498)
245 PRK11462 putative transporter; 97.9 0.00022 4.8E-09 71.9 13.5 81 91-171 266-348 (460)
246 COG2807 CynX Cyanate permease 97.9 0.0003 6.6E-09 65.9 12.8 145 71-220 228-376 (395)
247 KOG2816 Predicted transporter 97.8 0.00018 3.9E-09 71.6 12.2 139 330-480 71-209 (463)
248 PF06963 FPN1: Ferroportin1 (F 97.8 0.022 4.9E-07 56.2 25.7 117 317-434 286-407 (432)
249 KOG3762 Predicted transporter 97.8 1.2E-05 2.7E-10 78.5 2.3 137 88-225 406-543 (618)
250 KOG3810 Micronutrient transpor 97.7 0.00083 1.8E-08 62.4 13.1 345 100-465 54-416 (433)
251 TIGR00769 AAA ADP/ATP carrier 97.7 0.07 1.5E-06 53.4 31.5 111 90-200 45-188 (472)
252 KOG0637 Sucrose transporter an 97.6 0.00055 1.2E-08 66.0 10.5 97 102-198 81-200 (498)
253 PF02487 CLN3: CLN3 protein; 97.5 0.016 3.6E-07 56.2 19.3 123 102-230 73-197 (402)
254 KOG3574 Acetyl-CoA transporter 97.3 0.039 8.5E-07 52.3 18.6 143 52-199 32-191 (510)
255 PF12832 MFS_1_like: MFS_1 lik 97.3 0.00095 2.1E-08 48.5 6.4 61 66-128 15-75 (77)
256 KOG2533 Permease of the major 97.3 0.0023 5E-08 64.4 11.2 144 323-475 83-232 (495)
257 PF03209 PUCC: PUCC protein; 97.2 0.0054 1.2E-07 59.0 12.5 120 78-199 236-359 (403)
258 KOG2563 Permease of the major 97.2 0.0056 1.2E-07 59.2 11.8 115 323-438 81-195 (480)
259 TIGR00926 2A1704 Peptide:H+ sy 97.1 0.021 4.5E-07 59.8 15.9 130 335-465 37-177 (654)
260 PF05631 DUF791: Protein of un 96.8 0.16 3.5E-06 48.2 17.9 154 314-476 59-222 (354)
261 KOG3762 Predicted transporter 96.8 0.011 2.4E-07 58.5 10.1 132 324-464 409-541 (618)
262 PF03092 BT1: BT1 family; Int 96.7 0.047 1E-06 54.6 14.3 155 316-476 17-181 (433)
263 KOG1479 Nucleoside transporter 96.6 0.61 1.3E-05 45.2 20.8 32 140-171 116-147 (406)
264 PF00854 PTR2: POT family; In 96.1 0.022 4.8E-07 55.8 8.3 105 119-224 2-118 (372)
265 KOG2325 Predicted transporter/ 96.1 0.088 1.9E-06 52.4 12.1 144 324-473 74-232 (488)
266 PF13000 Acatn: Acetyl-coenzym 96.0 0.79 1.7E-05 45.6 17.8 140 57-200 6-177 (544)
267 PF02487 CLN3: CLN3 protein; 95.8 0.048 1E-06 53.0 8.6 106 91-200 284-394 (402)
268 KOG1237 H+/oligopeptide sympor 95.7 0.35 7.6E-06 49.9 15.2 147 70-219 57-235 (571)
269 TIGR00939 2a57 Equilibrative N 95.6 2.9 6.3E-05 41.8 23.6 90 140-234 105-201 (437)
270 PRK03612 spermidine synthase; 95.6 0.25 5.3E-06 50.6 13.4 131 84-215 46-184 (521)
271 PF12832 MFS_1_like: MFS_1 lik 95.5 0.1 2.2E-06 37.8 7.7 48 310-357 21-71 (77)
272 PF03219 TLC: TLC ATP/ADP tran 95.3 3.9 8.4E-05 41.4 25.4 101 100-200 71-203 (491)
273 KOG3098 Uncharacterized conser 94.1 1.6 3.4E-05 43.6 14.1 96 100-196 291-407 (461)
274 COG0477 ProP Permeases of the 94.0 1.5 3.3E-05 40.6 13.9 108 324-439 42-152 (338)
275 PF05978 UNC-93: Ion channel r 94.0 3.2 7E-05 34.8 14.1 102 327-438 43-144 (156)
276 PF06963 FPN1: Ferroportin1 (F 93.7 6.1 0.00013 39.3 17.5 138 326-463 43-193 (432)
277 PF07672 MFS_Mycoplasma: Mycop 93.4 3.2 6.9E-05 37.7 13.6 52 173-224 2-57 (267)
278 COG3202 ATP/ADP translocase [E 93.2 9.9 0.00022 38.0 21.1 111 91-201 64-208 (509)
279 TIGR00939 2a57 Equilibrative N 91.6 2 4.4E-05 42.9 11.1 106 92-198 311-429 (437)
280 TIGR00769 AAA ADP/ATP carrier 91.4 16 0.00035 36.8 17.2 41 403-443 149-189 (472)
281 PF00854 PTR2: POT family; In 90.5 1.3 2.8E-05 43.3 8.6 113 353-466 3-119 (372)
282 PRK03612 spermidine synthase; 89.0 9.4 0.0002 39.2 13.7 46 417-462 143-189 (521)
283 PF01733 Nucleoside_tran: Nucl 88.8 0.099 2.1E-06 49.7 -0.7 34 402-435 267-300 (309)
284 PF06779 DUF1228: Protein of u 87.7 5.5 0.00012 29.4 7.9 58 312-369 15-75 (85)
285 KOG1479 Nucleoside transporter 87.1 11 0.00023 36.9 11.8 106 91-197 285-399 (406)
286 PF01733 Nucleoside_tran: Nucl 86.0 0.19 4.1E-06 47.8 -0.6 107 93-199 187-306 (309)
287 KOG3626 Organic anion transpor 83.4 18 0.0004 38.3 12.3 155 322-477 133-349 (735)
288 KOG3097 Predicted membrane pro 82.3 9.3 0.0002 36.1 8.6 71 100-171 70-140 (390)
289 PF01770 Folate_carrier: Reduc 79.7 66 0.0014 31.8 14.1 91 340-440 60-150 (412)
290 KOG3880 Predicted small molecu 78.6 4.4 9.6E-05 37.8 5.2 78 124-201 325-402 (409)
291 KOG0637 Sucrose transporter an 78.6 1.4 3E-05 43.4 2.2 67 90-158 336-402 (498)
292 KOG1237 H+/oligopeptide sympor 74.7 1.1E+02 0.0025 31.8 15.8 133 332-464 84-239 (571)
293 PF03137 OATP: Organic Anion T 67.5 1.8 3.9E-05 44.6 0.1 116 320-435 37-193 (539)
294 KOG3574 Acetyl-CoA transporter 62.8 1E+02 0.0022 30.2 10.5 18 339-356 81-103 (510)
295 PF06912 DUF1275: Protein of u 60.3 93 0.002 27.4 9.7 34 94-127 52-88 (209)
296 KOG4332 Predicted sugar transp 57.6 68 0.0015 29.7 8.0 31 324-354 75-105 (454)
297 KOG1277 Endosomal membrane pro 54.9 1.1E+02 0.0023 30.4 9.3 20 279-298 283-302 (593)
298 PF04281 Tom22: Mitochondrial 53.6 26 0.00057 28.4 4.4 24 408-431 60-83 (137)
299 PF03219 TLC: TLC ATP/ADP tran 53.4 2.6E+02 0.0057 28.5 13.3 42 403-444 164-205 (491)
300 COG4262 Predicted spermidine s 50.4 1.4E+02 0.0031 28.8 9.1 93 75-168 31-132 (508)
301 PF07672 MFS_Mycoplasma: Mycop 49.1 61 0.0013 29.7 6.5 99 93-192 146-254 (267)
302 PF02990 EMP70: Endomembrane p 46.3 1.8E+02 0.004 29.9 10.4 25 278-302 251-275 (521)
303 TIGR00986 3a0801s05tom22 mitoc 45.8 41 0.00088 27.4 4.3 23 408-430 58-80 (145)
304 COG1268 BioY Uncharacterized c 44.1 70 0.0015 27.6 5.8 25 95-119 89-113 (184)
305 TIGR02230 ATPase_gene1 F0F1-AT 43.4 1.1E+02 0.0023 23.5 6.0 32 332-363 54-85 (100)
306 PF11298 DUF3099: Protein of u 41.2 90 0.002 22.2 5.0 31 111-141 10-40 (73)
307 PF11947 DUF3464: Protein of u 40.5 1.4E+02 0.0031 24.8 6.8 50 139-191 95-144 (153)
308 COG5336 Uncharacterized protei 37.8 1.1E+02 0.0025 23.5 5.3 25 335-360 57-82 (116)
309 COG5336 Uncharacterized protei 37.5 1.9E+02 0.0042 22.3 7.2 34 413-446 36-69 (116)
310 PF02632 BioY: BioY family; I 34.6 1.2E+02 0.0025 25.2 5.6 25 96-120 61-85 (148)
311 KOG3880 Predicted small molecu 33.7 1E+02 0.0022 29.2 5.5 60 103-164 77-138 (409)
312 COG3619 Predicted membrane pro 32.8 3.7E+02 0.0079 24.2 11.8 31 87-117 54-84 (226)
313 PRK14229 camphor resistance pr 29.9 1.7E+02 0.0037 22.7 5.5 26 147-172 55-80 (108)
314 KOG2881 Predicted membrane pro 26.3 5.1E+02 0.011 23.8 11.8 29 332-360 251-279 (294)
315 COG4769 Predicted membrane pro 23.8 90 0.0019 26.1 3.0 46 102-153 87-132 (181)
316 PF11947 DUF3464: Protein of u 23.2 4.2E+02 0.0091 22.1 6.8 28 405-432 116-143 (153)
317 PF11511 RhodobacterPufX: Intr 22.9 2.5E+02 0.0055 19.5 4.5 19 458-476 40-58 (67)
318 TIGR02230 ATPase_gene1 F0F1-AT 21.4 3.7E+02 0.0079 20.6 5.7 27 104-130 59-85 (100)
319 PRK10263 DNA translocase FtsK; 20.3 7.9E+02 0.017 28.6 10.1 17 333-349 64-80 (1355)
320 PF12670 DUF3792: Protein of u 20.3 4.3E+02 0.0093 20.7 12.8 41 319-359 32-72 (116)
No 1
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-50 Score=392.37 Aligned_cols=435 Identities=34% Similarity=0.575 Sum_probs=363.4
Q ss_pred HHHHHHHHHHHhhhhccceeeccchhhh--------hhhcCC--CCc--hhHHHHHHHHHHHHHHHHHHhhHhhhhhchh
Q 011277 50 FPHVLVATLSSFLFGYHLGVVNEPLESI--------SLDLGF--NGN--TLAEGLVVSMCLGGAFIGSTLSGWIADGVGR 117 (489)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i--------~~~~~~--~~~--~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GR 117 (489)
....+.++++++-.||+.+.+|+..+.+ .+.++. +.+ +..++.+++.+.+|.++|+++.++++||+||
T Consensus 10 ~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GR 89 (485)
T KOG0569|consen 10 LLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGR 89 (485)
T ss_pred HHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3345566777788999999999986543 344453 222 2447889999999999999999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHhh---cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHH
Q 011277 118 RRAFQLCALPMIIGASISAT---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL 194 (489)
Q Consensus 118 r~~~~~~~~~~~i~~~l~~~---~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~ 194 (489)
|..+..+.++..+++++..+ .++++.++++|++.|+..|......+.|+.|..|++.||....+.+++..+|.+++.
T Consensus 90 K~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~ 169 (485)
T KOG0569|consen 90 KNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQ 169 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHH
Confidence 99999999988887777654 578899999999999999999999999999999999999999999999999999998
Q ss_pred Hhhccc--ccCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHh-cCCHHHHHHHHHHHhCCCchhHHHHHHHhh---c
Q 011277 195 LIGIPV--KEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYK-KGRTAEAEAEFEKLLGGSHVKSSLAELSKL---D 268 (489)
Q Consensus 195 ~~~~~l--~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 268 (489)
+++..- .+... |++.+....+++++.++...++||||||+.. |+|.+|+++.++++++.++.++..++.... +
T Consensus 170 ~~~l~~ilGt~~~-W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~ 248 (485)
T KOG0569|consen 170 VLGLPSLLGTEDL-WPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEE 248 (485)
T ss_pred HHccHHhcCCCcc-hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHh
Confidence 887652 23333 7888888889999999999999999999997 899999999999999987655544433222 2
Q ss_pred cCCCCcchhHHHhhhccchhH-HHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHH
Q 011277 269 RGDDGDIVKFEELLYGRHFRV-VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVL 344 (489)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l 344 (489)
+.++.+..++++++++++.|. ..+...+...+++++.+.+.+|...+++..|++.. .++...++.+++.++++.++
T Consensus 249 ~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~l 328 (485)
T KOG0569|consen 249 ELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFL 328 (485)
T ss_pred ccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222335667889999877665 45566778888999999999999999999998754 67888999999999999999
Q ss_pred hhhcCCchhHHHhhHHHHHHHHHHHHHhhccC-CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHH
Q 011277 345 MDKLGRKALLQWSFFSMAVSMAIQVAASSSYI-PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV 423 (489)
Q Consensus 345 ~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 423 (489)
+||+|||++++.+..++.+..+++........ ...+..+..+...+.+.+.|++|.+|+++.+.+|++|++.|++++++
T Consensus 329 id~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~ 408 (485)
T KOG0569|consen 329 IDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSV 408 (485)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHH
Confidence 99999999999998888877665543321111 11345566778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhhc
Q 011277 424 CMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALL 486 (489)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e~~~~~~ 486 (489)
...++++..++.++.++++.+.+|. ..|..+.+.+++..+++++++||||||+.+||.++++
T Consensus 409 ~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 409 ATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE 470 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence 9999999999999999999999998 7888999999999999999999999999999987765
No 2
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=8.8e-45 Score=369.36 Aligned_cols=439 Identities=33% Similarity=0.597 Sum_probs=355.8
Q ss_pred HHHHHHHHHHHHhhhhcc--ceeeccchhhhhhhcCCCC---ch--hHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHH
Q 011277 49 SFPHVLVATLSSFLFGYH--LGVVNEPLESISLDLGFNG---NT--LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF 121 (489)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~---~~--~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~ 121 (489)
.........++.+.++++ .+...+....+.++...+. +. .+.+++.+.+.+|..+|+++.|+++|++|||+.+
T Consensus 43 ~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l 122 (513)
T KOG0254|consen 43 VILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTL 122 (513)
T ss_pred hHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344566778888999997 5666666666665433221 11 2348999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc
Q 011277 122 QLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201 (489)
Q Consensus 122 ~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~ 201 (489)
+.+.+.+.+|++++++++|+.++.++|+++|+|.|+...+.+.|++|+.|++.||...+..+....+|...+.+++....
T Consensus 123 ~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~ 202 (513)
T KOG0254|consen 123 LLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTS 202 (513)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988876654
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhC--CCchhHHHHHHHh-h-ccCC-CCcch
Q 011277 202 EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG--GSHVKSSLAELSK-L-DRGD-DGDIV 276 (489)
Q Consensus 202 ~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~-~~~~-~~~~~ 276 (489)
+...+||..+++..++.++..+..++.||||+|+.++++.+++++.++++.+ +++.....+++.. . .+.. .....
T Consensus 203 ~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (513)
T KOG0254|consen 203 KVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKA 282 (513)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccc
Confidence 3312489999999999998888888899999999999999999999999988 3333333333321 0 0110 11111
Q ss_pred hHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHhhhcCCchhH
Q 011277 277 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS--GLANVFVGIANLLGSVVAMVLMDKLGRKALL 354 (489)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 354 (489)
.+.+++.++..+....+..+..++++++.+...+|.+.+++..+.+. ....+..++.++++.+++..+.||+|||+++
T Consensus 283 ~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ll 362 (513)
T KOG0254|consen 283 SWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLL 362 (513)
T ss_pred cHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 35556655566777778888999999999999999999999988774 4566778889999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHhhccC----CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHH
Q 011277 355 QWSFFSMAVSMAIQVAASSSYI----PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV 430 (489)
Q Consensus 355 ~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~ 430 (489)
+.+...+.++++++........ ......+..+...+++...++.+.+|+++.+.+|++|.+.|+++.+++..++++
T Consensus 363 l~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~ 442 (513)
T KOG0254|consen 363 LFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWL 442 (513)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHH
Confidence 9999999988887654432211 122345566777888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHH-HHHhhcccCCCCCHHHHHHhhcC
Q 011277 431 INFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA-FVKRNVVETKGKSLQEIEIALLP 487 (489)
Q Consensus 431 ~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~et~~~~~~e~~~~~~~ 487 (489)
.+++....++.+....+....|..++.++.+... +.+.++|||||++++|+++.++.
T Consensus 443 ~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~ 500 (513)
T KOG0254|consen 443 WNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE 500 (513)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence 9999988877776665545667777777777776 88899999999999999987643
No 3
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=100.00 E-value=1.1e-43 Score=361.25 Aligned_cols=428 Identities=19% Similarity=0.267 Sum_probs=297.1
Q ss_pred HHHHHHHHHHHHhhhhccceeeccchhhhhhhc-C--CCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhH
Q 011277 49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDL-G--FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA 125 (489)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~--~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~ 125 (489)
......+++++.+.++||.+.++...|.+..++ + ...++.+.+++.+.+.+|+.+|+++.|+++||+|||+++.++.
T Consensus 14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~ 93 (502)
T TIGR00887 14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL 93 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 344567788889999999999998888776643 1 1223445678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcch------HHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 011277 126 LPMIIGASISATTRN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP 199 (489)
Q Consensus 126 ~~~~i~~~l~~~~~~------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~ 199 (489)
+++.+++++++++.+ +..++++|+++|++.|...+....+++|++|+++||+.+++......+|..+++.++..
T Consensus 94 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~ 173 (502)
T TIGR00887 94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI 173 (502)
T ss_pred HHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988766 78899999999999999999999999999999999999999999999988877776543
Q ss_pred ccc---------------------CCc-hhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHH-HHHHHHHHHhCCCc
Q 011277 200 VKE---------------------IAG-WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTA-EAEAEFEKLLGGSH 256 (489)
Q Consensus 200 l~~---------------------~~~-~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~-~~~~~~~~~~~~~~ 256 (489)
+.. ... .||++|.+..++.++..+..+++||||+|+..++|.+ ++.+.+++..+.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~ 253 (502)
T TIGR00887 174 VLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKI 253 (502)
T ss_pred HHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcccc
Confidence 210 011 2899999888888888888889999999998877764 35555555433211
Q ss_pred hhHHHHHHHhhccCCCCcchhHHHhhhcc---ch-hHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---h----
Q 011277 257 VKSSLAELSKLDRGDDGDIVKFEELLYGR---HF-RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---L---- 325 (489)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---- 325 (489)
.+ ..++.++.+++++....+++++++++ +. +........+....+ ..+....+.+.+++..|.+.. .
T Consensus 254 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~p~i~~~~G~~~~~~~~~~~~ 331 (502)
T TIGR00887 254 EA-EPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDI-AFYGVNLNQKVILSAIGYSPPAATNNAYE 331 (502)
T ss_pred cc-CcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHccccccHHHHHHHcCCCCccchhHHH
Confidence 10 01111111111111112455665432 11 222211112221111 112223345555665555321 0
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHh
Q 011277 326 --------ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFA 397 (489)
Q Consensus 326 --------~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (489)
......++.+++.+++++++||+|||+++..+..++++++.++....... . ..... ...+.+...+.
T Consensus 332 ~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~-~--~~~~~--~~~~~~~~~~~ 406 (502)
T TIGR00887 332 ELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL-S--THGFL--AIYVLAQFFAN 406 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc-c--hhHHH--HHHHHHHHHHh
Confidence 12333456677888999999999999998887766666655443322111 1 11111 11122223345
Q ss_pred cCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCchhhHHHHHHHHHHHHHHH
Q 011277 398 LGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ----------LGPQLLYSIFGTFCLMAVAFVK 467 (489)
Q Consensus 398 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
.+.+++.+.+.+|++|++.|+++.|+.+.++++++++++.+++.+.+. .+....+.+++++++++.++.
T Consensus 407 ~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~- 485 (502)
T TIGR00887 407 FGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT- 485 (502)
T ss_pred cCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-
Confidence 667788888999999999999999999999999999999998888763 233456777887777765544
Q ss_pred hhcccCCCCCHHHHHHh
Q 011277 468 RNVVETKGKSLQEIEIA 484 (489)
Q Consensus 468 ~~~~et~~~~~~e~~~~ 484 (489)
+++||||||++||+|++
T Consensus 486 ~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 486 LLIPETKGKSLEELSGE 502 (502)
T ss_pred eEeccCCCCCHHhhhCC
Confidence 67899999999999864
No 4
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=100.00 E-value=5.3e-42 Score=348.17 Aligned_cols=429 Identities=31% Similarity=0.523 Sum_probs=312.3
Q ss_pred HHHHHHHHHHHhhhhccceeeccchhhhhhhcC------CCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHH
Q 011277 50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL 123 (489)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~ 123 (489)
...+++++++.+.++|+.+.+++..|.+.+++. .+.++.+.++..+.+.+|..++++++|+++||+|||++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~ 90 (479)
T PRK10077 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (479)
T ss_pred HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 445677788999999999999999999988872 12334567899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhc------------chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHH
Q 011277 124 CALPMIIGASISATT------------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM 191 (489)
Q Consensus 124 ~~~~~~i~~~l~~~~------------~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~ 191 (489)
+.++++++.++++++ .++..++++|+++|++.|+..+....+++|++|+++||+++++.+.+..+|..
T Consensus 91 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~ 170 (479)
T PRK10077 91 AAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL 170 (479)
T ss_pred HHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH
Confidence 999999998887763 22567789999999999999999999999999999999999999999999988
Q ss_pred HHHHhhcccc--------cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHH
Q 011277 192 GSLLIGIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE 263 (489)
Q Consensus 192 ~g~~~~~~l~--------~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (489)
++++++..+. +..+ ||+.|++..++.++..+..+++||+|+|+..+++.+++++..++..+.+..+...++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (479)
T PRK10077 171 VVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQE 249 (479)
T ss_pred HHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHH
Confidence 8777654321 2334 799999887777776666778999999988788877776666655443322222222
Q ss_pred HHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHH
Q 011277 264 LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVV 340 (489)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~ 340 (489)
.....+.+.. +....+. ..............+++..+.+...++.+.+++..+.+. .......++..+++.++
T Consensus 250 ~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 325 (479)
T PRK10077 250 IKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVL 325 (479)
T ss_pred HHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 1111000000 0001110 011111222222233344445556677777777766543 34555677888999999
Q ss_pred HHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhH
Q 011277 341 AMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420 (489)
Q Consensus 341 ~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 420 (489)
+++++||+|||+++..+...+.++.+.+....... . ........++.+..++..+.+|+.+.+++|++|++.|+++
T Consensus 326 ~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 401 (479)
T PRK10077 326 AIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--A--PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKA 401 (479)
T ss_pred HHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC--c--ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHH
Confidence 99999999999999888887777766554332111 1 1112222344455556556678888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhhcC
Q 011277 421 MAVCMSVHWVINFFVGLLFLRLL------EQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLP 487 (489)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e~~~~~~~ 487 (489)
+|+.+.++++++.+++.+++.+. +..++...|.+++.+++++.++.+...||||+++++|+|+.++.
T Consensus 402 ~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 474 (479)
T PRK10077 402 LAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP 474 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence 99999999999999987776543 35667777888888877777777778999999999999988754
No 5
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=100.00 E-value=1e-41 Score=351.89 Aligned_cols=417 Identities=18% Similarity=0.227 Sum_probs=302.3
Q ss_pred chHHHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHH
Q 011277 47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~ 126 (489)
+..+..+++++++.+.++++...++..+|.+.++++++.+ +.+++.+.+.+|.++|++++|+++||+|||++++++++
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~--~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li 240 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDS--GKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3344455677778888899998899999999999988643 56789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC---
Q 011277 127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI--- 203 (489)
Q Consensus 127 ~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~--- 203 (489)
++++++++++++++++.++++|+++|++.|+..++...+++|++|+++||+..+++.....+|.++++.++..+...
T Consensus 241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~ 320 (742)
T TIGR01299 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW 320 (742)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988777655332211
Q ss_pred ----------CchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCch-----hHH--HHHHHh
Q 011277 204 ----------AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHV-----KSS--LAELSK 266 (489)
Q Consensus 204 ----------~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~ 266 (489)
.+ ||+++++.+++.++.++..+++||||+|+..++|.+++.+.++++.+.+.. ... .++.+.
T Consensus 321 ~~~~g~~~~~~g-WR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~ 399 (742)
T TIGR01299 321 SFQMGSAYQFHS-WRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT 399 (742)
T ss_pred hhcccccccccc-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHH
Confidence 23 799999988888888788888999999999999999999998888654321 000 011111
Q ss_pred hcc-------CCCCc-----------------chhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhc---
Q 011277 267 LDR-------GDDGD-----------------IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA--- 319 (489)
Q Consensus 267 ~~~-------~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 319 (489)
.+. .+... +..+.+++.++..+..+...+++....+ .++.+..|.|.+++..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~~~ 478 (742)
T TIGR01299 400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQAD 478 (742)
T ss_pred hhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 000 00000 0134556665555555555555544443 3444555555443210
Q ss_pred ---------------------------------------CC---------------------------------------
Q 011277 320 ---------------------------------------GL--------------------------------------- 321 (489)
Q Consensus 320 ---------------------------------------~~--------------------------------------- 321 (489)
++
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 558 (742)
T TIGR01299 479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN 558 (742)
T ss_pred HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence 00
Q ss_pred -------------------------------------CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHH
Q 011277 322 -------------------------------------SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVS 364 (489)
Q Consensus 322 -------------------------------------~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~ 364 (489)
......+..+++.++|.+++++++||+|||+++..+.++.+++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~ 638 (742)
T TIGR01299 559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCIS 638 (742)
T ss_pred cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 0012244566888999999999999999999998887777776
Q ss_pred HHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 365 MAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (489)
+++.....+ .. . . +...+++.+ +..+..+..+.+++|++|++.|++++|+++++++++++++|.+.+.+.+
T Consensus 639 ~ll~~~~~s-----~~-~-l-l~~~~l~g~-~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~ 709 (742)
T TIGR01299 639 CFFLSFGNS-----ES-A-M-IALLCLFGG-LSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709 (742)
T ss_pred HHHHHHHcc-----HH-H-H-HHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655443221 11 1 1 111112222 1223345667789999999999999999999999999999998877665
Q ss_pred HhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277 445 QLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSL 478 (489)
Q Consensus 445 ~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 478 (489)
. +...++.+++++.+++.++. ..+|||+++.+
T Consensus 710 ~-~~~~pf~i~a~~lll~~ll~-~~LPET~~~~l 741 (742)
T TIGR01299 710 I-TKAAPILFASAALACGGLLA-LKLPDTRGQVL 741 (742)
T ss_pred h-hhHHHHHHHHHHHHHHHHHH-HhCCCCccccc
Confidence 3 34456666666666655544 46799999865
No 6
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=4.3e-48 Score=389.70 Aligned_cols=430 Identities=33% Similarity=0.572 Sum_probs=325.1
Q ss_pred HHHHHhhhhccceeeccchhhhh--hhcCCCC-------chhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHH
Q 011277 56 ATLSSFLFGYHLGVVNEPLESIS--LDLGFNG-------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (489)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~-------~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~ 126 (489)
..++.+.++||...++...+... .+...+. ++...++..+...+|..+|+++.|.++||+|||+++..+.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 45566889999887776655444 2222221 12346789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc---hHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC
Q 011277 127 PMIIGASISATTR---NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI 203 (489)
Q Consensus 127 ~~~i~~~l~~~~~---~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~ 203 (489)
+..+++++.++++ |++.+.++|+++|++.|+..+....|+.|..|+++||+..++.+.+..+|.+++..++......
T Consensus 85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 164 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY 164 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 9999999999999999999999999999999999999999999999999988888877655433
Q ss_pred Cc--hhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHh
Q 011277 204 AG--WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL 281 (489)
Q Consensus 204 ~~--~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (489)
.+ .||+.++...++.++..+...++||||+|+..++|.+|+++.+++.++.+..+++.++..+..+++...+..+.++
T Consensus 165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 244 (451)
T PF00083_consen 165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDL 244 (451)
T ss_pred cccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeec
Confidence 22 3899999988888877777889999999999999999999888886554333332222222111111112445566
Q ss_pred hhccc-hhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc-hHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhH
Q 011277 282 LYGRH-FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF 359 (489)
Q Consensus 282 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~ 359 (489)
++++. .+.......+...+.+.+.+...+|.+.+++..+.+.. ..+....+..+++.+++.++.||+|||+++..+..
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~ 324 (451)
T PF00083_consen 245 FRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLL 324 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66544 33444444455555566666666777777777666555 45566667788888888899999999999888877
Q ss_pred HHHHHHHHHHHHhhccCCCc-hhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 011277 360 SMAVSMAIQVAASSSYIPGS-ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL 438 (489)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 438 (489)
.+.++...+........... ......+.....+...+..+.+++.+.+.+|++|++.|+++.+++..++++++++.+.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~ 404 (451)
T PF00083_consen 325 LMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFL 404 (451)
T ss_pred cccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 76666555430000011110 11122223334455567778899999999999999999999999999999999999988
Q ss_pred HHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhh
Q 011277 439 FLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIAL 485 (489)
Q Consensus 439 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e~~~~~ 485 (489)
.+.+.+..+....+.++++++++..++.+.++||||||+++|+|++|
T Consensus 405 ~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 405 FPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred cccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 88877777756778888888888888888999999999999999875
No 7
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=100.00 E-value=2.9e-38 Score=320.55 Aligned_cols=431 Identities=32% Similarity=0.612 Sum_probs=308.6
Q ss_pred HHHHHHHHHHHhhhhccceeeccchhhhhhhcCCC------CchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHH
Q 011277 50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN------GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL 123 (489)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~ 123 (489)
....+++.++.++.+++...++...|.+..+++.+ .++.+.+++.+.+.++..++++++|+++||+|||+++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~ 106 (481)
T TIGR00879 27 ALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLI 106 (481)
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Confidence 44455667777888999999999999998888877 446678999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhc---chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhh---
Q 011277 124 CALPMIIGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG--- 197 (489)
Q Consensus 124 ~~~~~~i~~~l~~~~---~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~--- 197 (489)
+.+++.++.++++.+ .+++.++++|+++|++.|...+....+++|++|+++|+++.++++.+..+|..++++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 186 (481)
T TIGR00879 107 IALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK 186 (481)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988554 44558999999999999999999999999999999999999999999999999999988
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHH-H---HHHh-hccCCC
Q 011277 198 IPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL-A---ELSK-LDRGDD 272 (489)
Q Consensus 198 ~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~-~~~~~~ 272 (489)
....+..+ ||+.|++..+..++..+..+++||+|+++..+++.++.++..++..+.+...... + .... .+.+..
T Consensus 187 ~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (481)
T TIGR00879 187 VSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKR 265 (481)
T ss_pred hcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 55444455 7999998766666666667789999998776666655544444332221111100 0 0000 000000
Q ss_pred CcchhHHHhhhcc--chhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhh
Q 011277 273 GDIVKFEELLYGR--HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDK 347 (489)
Q Consensus 273 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr 347 (489)
.....+.+.++.. ..+..+....+..+......+...++.+...+..+.+. +.......++.+++.+++++++||
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 345 (481)
T TIGR00879 266 SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR 345 (481)
T ss_pred hccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011122222211 12223333333333333333344556666666666654 455666778888999999999999
Q ss_pred cCCchhHHHhhHHHHHHHHHHHHHhhccCCCc--hhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHH
Q 011277 348 LGRKALLQWSFFSMAVSMAIQVAASSSYIPGS--ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCM 425 (489)
Q Consensus 348 ~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 425 (489)
+|||+.+..+..+..++............... ......+....++...++.+..++...+..|.+|++.|++++++.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 425 (481)
T TIGR00879 346 FGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAV 425 (481)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHH
Confidence 99999888876666665554432211111110 0012222233444555666777888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHH
Q 011277 426 SVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEI 481 (489)
Q Consensus 426 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e~ 481 (489)
...++++++++.+.+.+.+..++...|.+++++++++.+......||+|+++++|+
T Consensus 426 ~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 481 (481)
T TIGR00879 426 AANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhhC
Confidence 99999999999998888888888888888888888888877778899999987653
No 8
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-40 Score=306.64 Aligned_cols=430 Identities=20% Similarity=0.319 Sum_probs=299.0
Q ss_pred cchHHHHHHHHHHHHhhhhccceeeccchhhhhhhcCC-C-----CchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhH
Q 011277 46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGF-N-----GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR 119 (489)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-----~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~ 119 (489)
|+ ..+.+++...+.|.|+||+..++...|-+...+.- + ..+...+.+....++|.++||+++|+++||+|||+
T Consensus 37 w~-~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~ 115 (538)
T KOG0252|consen 37 WK-HFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK 115 (538)
T ss_pred HH-HHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 44 35677888999999999999999888766654421 1 12233467888899999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhhcch-------HHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHH
Q 011277 120 AFQLCALPMIIGASISATTRN-------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMG 192 (489)
Q Consensus 120 ~~~~~~~~~~i~~~l~~~~~~-------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~ 192 (489)
++...++++++++++++++.. ..++.+.|++.|+|.|+.+|.+.++.+|....+.||...+.+...+.+|.+.
T Consensus 116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila 195 (538)
T KOG0252|consen 116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA 195 (538)
T ss_pred hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence 999999999999998887532 4677889999999999999999999999999999999988887777777766
Q ss_pred HHHhhccc--------c------cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhc-CCHHHHHHHHHHHhCCCch
Q 011277 193 SLLIGIPV--------K------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK-GRTAEAEAEFEKLLGGSHV 257 (489)
Q Consensus 193 g~~~~~~l--------~------~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~-~~~~~~~~~~~~~~~~~~~ 257 (489)
|.+++..+ . +..+-||..|.+..+|+++.+..++.+|||++|-... ++.+.+.++.++... .
T Consensus 196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~---~ 272 (538)
T KOG0252|consen 196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLS---V 272 (538)
T ss_pred ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccc---c
Confidence 66554321 1 1223499999999999999999999999999986332 233333322222111 1
Q ss_pred hHHHHHHHh--hccCCCCcchh-HHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc----------
Q 011277 258 KSSLAELSK--LDRGDDGDIVK-FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---------- 324 (489)
Q Consensus 258 ~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 324 (489)
..++.+. .+...+.+... +.+.+..++-+.++.....+...- ..++....+...+++..+...+
T Consensus 273 --~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllD-iafy~~nL~~s~I~~~ig~~~~~~~~~~~~~v 349 (538)
T KOG0252|consen 273 --DIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLD-IAFYGQNLFQSVIFSAIGVIPSANTYHELFKV 349 (538)
T ss_pred --ccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhh-hhhhccccHHHHHHHhhccCCCcchHHHHHHH
Confidence 1111001 01111111111 333333334444433222222211 1122222344555554443322
Q ss_pred --hHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277 325 --LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP 402 (489)
Q Consensus 325 --~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (489)
...++...+.++|..++..++|+.|||++.+.++.++.+..+.+...+.+.. .... .+. ...+..+..+.|.+.
T Consensus 350 A~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~-~~~G-f~v--~y~l~~ff~NFGPn~ 425 (538)
T KOG0252|consen 350 AEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE-NTIG-FVV--LYSLTFFFGNFGPNA 425 (538)
T ss_pred HHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc-ccCc-eee--hHHHHHHHHhcCCCc
Confidence 1123333455567788888999999999999999988887776654443221 1111 111 112223445777888
Q ss_pred cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011277 403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE-----QLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS 477 (489)
Q Consensus 403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 477 (489)
.+.++.+|.||++.|+++.|++...+.++++++...+.++.+ ..+...++.+++.+++++.++. .++||||||+
T Consensus 426 ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~ 504 (538)
T KOG0252|consen 426 TTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKS 504 (538)
T ss_pred eeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccccC
Confidence 888899999999999999999999999999999999999888 7788899999999999987765 4688999999
Q ss_pred HHHHHHhhcC
Q 011277 478 LQEIEIALLP 487 (489)
Q Consensus 478 ~~e~~~~~~~ 487 (489)
++|++++..+
T Consensus 505 leei~~e~~~ 514 (538)
T KOG0252|consen 505 LEEISNEEES 514 (538)
T ss_pred HHHhcChhhc
Confidence 9999876543
No 9
>TIGR00898 2A0119 cation transport protein.
Probab=100.00 E-value=2.8e-37 Score=315.45 Aligned_cols=390 Identities=23% Similarity=0.315 Sum_probs=281.2
Q ss_pred cchhhhhhhcCCCC-chhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHH
Q 011277 72 EPLESISLDLGFNG-NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV 150 (489)
Q Consensus 72 ~~~~~i~~~~~~~~-~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l 150 (489)
...|.+.+|++++. ++.+.++..+.+.+|+.+|++++|+++||+|||+++.++.++.++++++.++++|++.++++|++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l 189 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL 189 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 45678899999862 24456899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccC
Q 011277 151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230 (489)
Q Consensus 151 ~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~E 230 (489)
.|++.+...+....++.|++|+++|++..+++..+..+|.+++++++..+.+ ||+.|++..++.++..+..+++||
T Consensus 190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~~~~~~~~~~e 265 (505)
T TIGR00898 190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTFLFFLLSWFVPE 265 (505)
T ss_pred HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999988888765543 799999887777777777788999
Q ss_pred ChHHHHhcCCHHHHHHHHHHHhCCCchh--HHHHHHH-hhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHH
Q 011277 231 SPHWLYKKGRTAEAEAEFEKLLGGSHVK--SSLAELS-KLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINA 307 (489)
Q Consensus 231 sp~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (489)
||+|+..+++.+++.+.+++..+.+..+ ....+.. +.+..++.++..++++++++.++...+......+.. .
T Consensus 266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~ 340 (505)
T TIGR00898 266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTT-----A 340 (505)
T ss_pred ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHH-----H
Confidence 9999999999888877776654322111 1110000 000011112235677787777666554332222211 1
Q ss_pred HHHhH-HHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011277 308 IFYFS-SSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV 386 (489)
Q Consensus 308 ~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
..++. ....+..+.+........++..+++.++.+++.||+|||+.+..+.+..+++.+++..... .... ...
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~-----~~~~-~~~ 414 (505)
T TIGR00898 341 FSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV-----DLYF-LRT 414 (505)
T ss_pred HHHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC-----CchH-HHH
Confidence 11221 1122233344455666777888899999999999999999988877776666555443221 1111 111
Q ss_pred HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277 387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
...++...+ ..+..+..+.+.+|++|++.|++++|+.+.+++++++++|.+.. .+..+....+.+++++.+++.+..
T Consensus 415 ~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~--~~~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
T TIGR00898 415 ALAVLGKFG-ITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY--LGEKWLFLPLVLFGGLALLAGILT 491 (505)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH--HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 111111111 11223455678999999999999999999999999999998876 344455566777777766665544
Q ss_pred HhhcccCCCCCHHH
Q 011277 467 KRNVVETKGKSLQE 480 (489)
Q Consensus 467 ~~~~~et~~~~~~e 480 (489)
..+|||++++++|
T Consensus 492 -~~lpet~~~~l~~ 504 (505)
T TIGR00898 492 -LFLPETKGVPLPE 504 (505)
T ss_pred -HcCcCCCCCCCCC
Confidence 4689999998876
No 10
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=100.00 E-value=5.9e-36 Score=303.47 Aligned_cols=396 Identities=19% Similarity=0.240 Sum_probs=257.4
Q ss_pred HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhH---HHH-HHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHH
Q 011277 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLA---EGL-VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP 127 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~-~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~ 127 (489)
..+...++.++++||..+++...|.+.++++.+.++.. ..+ ..+..++|+.+|++++|+++||+|||+++..++++
T Consensus 17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l 96 (490)
T PRK10642 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 35566789999999999999999999999875544321 112 24778899999999999999999999999999999
Q ss_pred HHHHHHHHhhcchHHH--------HHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 011277 128 MIIGASISATTRNLIG--------MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP 199 (489)
Q Consensus 128 ~~i~~~l~~~~~~~~~--------l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~ 199 (489)
++++++++++++|+.+ ++++|+++|++.|+.++....+++|++|+++||++.++...+..+|..++..+...
T Consensus 97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~ 176 (490)
T PRK10642 97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL 176 (490)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 78999999999999999999999999999999999999988888887666644322
Q ss_pred c----c----cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCC
Q 011277 200 V----K----EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD 271 (489)
Q Consensus 200 l----~----~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (489)
+ . ...+ ||+.|++.+++.++.+++...+||||+|...+++.++.++ . ..+
T Consensus 177 ~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~-------~-----------~~~--- 234 (490)
T PRK10642 177 ISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR-------E-----------GLQ--- 234 (490)
T ss_pred HHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-------c-----------ccc---
Confidence 1 1 1234 7999999776666555566778999987543221111000 0 000
Q ss_pred CCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHH-hcCCCc---chHHHHHHHHHHHHHHHHHHHhhh
Q 011277 272 DGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLSS---GLANVFVGIANLLGSVVAMVLMDK 347 (489)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr 347 (489)
+.+..++++++++ +.+............. ..++....+.+..++ ..+.+. ........++.+++.++.|+++||
T Consensus 235 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr 312 (490)
T PRK10642 235 DGPKVSFKEIATK-HWRSLLTCIGLVIATN-VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR 312 (490)
T ss_pred ccccCCHHHHHHH-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011234444443 2222222221211111 122233334454443 345443 234455567788889999999999
Q ss_pred cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHH
Q 011277 348 LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV 427 (489)
Q Consensus 348 ~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 427 (489)
+|||+.+..+.....+.......... ...... .....++..+..+.+.+ ....+.+|++|++.|++++|+...+
T Consensus 313 ~grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~ 386 (490)
T PRK10642 313 FGRRPFVILGSVALFVLAIPAFILIN---SNVIGL--IFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNI 386 (490)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHh---CCCHHH--HHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHH
Confidence 99999877665433332222111111 111111 11122222222222222 2334678999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277 428 HWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAFVKRNVVETKGKSL 478 (489)
Q Consensus 428 ~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 478 (489)
+++++.++|.+...+.+..+ +...+.+..+++++..+.. ..+|||+++.+
T Consensus 387 ~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~~~ 437 (490)
T PRK10642 387 SVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANRPL 437 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCCCC
Confidence 88888889988887776554 3334444444444444433 35699977654
No 11
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=4e-35 Score=265.10 Aligned_cols=387 Identities=21% Similarity=0.281 Sum_probs=278.6
Q ss_pred hhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 011277 74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGT 153 (489)
Q Consensus 74 ~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~ 153 (489)
.|.+.+..+. +..+..+++...+.|..+|+..+|.++|++|||+.+....+...+..++.+.++|+.++.+.|.+.|+
T Consensus 101 ~~~l~~~w~~--s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~ 178 (528)
T KOG0253|consen 101 LPALDEVWGP--SEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGF 178 (528)
T ss_pred HHHHHhhhch--hhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhc
Confidence 3445666664 46677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccCChH
Q 011277 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPH 233 (489)
Q Consensus 154 g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~ 233 (489)
|.|+ .|...++-.|.-|..+|+..+-.. ..+.+|......+........| |||.......|..++....+++|||||
T Consensus 179 g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g-wr~~l~~~~~pl~~~a~f~~w~~ESpR 255 (528)
T KOG0253|consen 179 GVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG-WRYLLFTSSTPLMFAARFLVWVYESPR 255 (528)
T ss_pred cCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHhhcccCcc
Confidence 9999 777778889999999999888777 8888898887777666555566 688877777888888888899999999
Q ss_pred HHHhcCCHHHHHHHHHHHhCCCchh------------HHHHHHHhhcc---C-CCCcchhHHHhhhccchhHHHHHHHHH
Q 011277 234 WLYKKGRTAEAEAEFEKLLGGSHVK------------SSLAELSKLDR---G-DDGDIVKFEELLYGRHFRVVFIGSTLF 297 (489)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (489)
|+..+++++++.+.++++.+.+..+ ...+|-.+.++ + .+....+..+++...-.|..+....++
T Consensus 256 f~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iw 335 (528)
T KOG0253|consen 256 FYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIW 335 (528)
T ss_pred hhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHH
Confidence 9999999999988888876543221 11111111111 1 112223455555533334444444443
Q ss_pred HHHhhhhHHHHHHhHHHHHHhcCC---------------------C---cchHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 011277 298 ALQQLSGINAIFYFSSSVFKSAGL---------------------S---SGLANVFVGIANLLGSVVAMVLMDKLGRKAL 353 (489)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~ 353 (489)
+...+..+. ........++ .|. . ...-.++.....++|.++.++++||+|||+.
T Consensus 336 fgnafsyyg-~VLlttelfq-sgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkT 413 (528)
T KOG0253|consen 336 FGNAFSYYG-SVLLTTELFQ-SGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKT 413 (528)
T ss_pred HhhHHHHHH-HHHHHHHHHh-ccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhH
Confidence 333222211 1111112221 111 0 1123467778999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHH
Q 011277 354 LQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINF 433 (489)
Q Consensus 354 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~ 433 (489)
+...++.++++.+++...... ... ..+++..-.|.-+...+.++|.+|+||+..|+++.|.+++++++++.
T Consensus 414 Mal~l~~f~iflfll~~c~~r---n~~------tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI 484 (528)
T KOG0253|consen 414 MALSLILFGIFLFLLTTCKTR---NAY------TVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGI 484 (528)
T ss_pred HHHHHHHHHHHHHHHHHhcCc---chh------HHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhh
Confidence 988888777776665433221 111 11122222333444567889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277 434 FVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSL 478 (489)
Q Consensus 434 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 478 (489)
+.|++. +........+..+++++++++.+.+.++--|||||++
T Consensus 485 ~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 485 FSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 999876 3333444566778888888888877777889999975
No 12
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=100.00 E-value=1.1e-33 Score=282.59 Aligned_cols=382 Identities=18% Similarity=0.187 Sum_probs=238.3
Q ss_pred HHHHHHHHHhhhhccceeeccchhhhhhhcCCC-CchhHHHHHHHH---HHHHHHHHHHhhHhhhhhchhhHHHHHhHHH
Q 011277 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFN-GNTLAEGLVVSM---CLGGAFIGSTLSGWIADGVGRRRAFQLCALP 127 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~s~---~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~ 127 (489)
.+...+++.+++.+|...++...|.+.+|++.+ .++.+.+...+. .+++..+|++++|+++||+|||+++..++++
T Consensus 23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 102 (432)
T PRK10406 23 AIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCM 102 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 345567788899999998888899999998632 223333333344 4445559999999999999999999999999
Q ss_pred HHHHHHHHhhcchHH--------HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 011277 128 MIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP 199 (489)
Q Consensus 128 ~~i~~~l~~~~~~~~--------~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~ 199 (489)
++++++++++++++. .+++.|+++|++.|+.++....+++|++|+++||++.++...+...|.+++++++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~ 182 (432)
T PRK10406 103 MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVV 182 (432)
T ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998874 588999999999999999999999999999999999999888888887777765433
Q ss_pred cc--------cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCC
Q 011277 200 VK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD 271 (489)
Q Consensus 200 l~--------~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (489)
+. +..+ ||++|++.+++.++..+.....||+|++.. + + + +
T Consensus 183 ~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~--~--~------------------~--- 230 (432)
T PRK10406 183 LQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETSQQET------R--A--L------------------K--- 230 (432)
T ss_pred HHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCchHHH------h--h--h------------------c---
Confidence 22 1235 799999887777766655666788764310 0 0 0 0
Q ss_pred CCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHhhh
Q 011277 272 DGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDK 347 (489)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr 347 (489)
+..++++++++++.+.......+ .... ..+....|.+..+ +..+.+. +.......+...++..+.|+++||
T Consensus 231 --~~~~~~~l~~~~~~~~~~~~~~~--~~~~-~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr 305 (432)
T PRK10406 231 --EAGSLKGLWRNRRAFIMVLGFTA--AGSL-CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK 305 (432)
T ss_pred --ccccHHHHHhhHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00123444544433322221111 1111 1222333444444 3345543 233344455666777888999999
Q ss_pred cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHH
Q 011277 348 LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV 427 (489)
Q Consensus 348 ~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 427 (489)
++||+.+.....+..+........... . ......+.+.....+...+. .+....+.+|.+|++.|++++|+++.+
T Consensus 306 ~grr~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~fp~~~r~t~~g~~~~~ 380 (432)
T PRK10406 306 IGRRTSMLCFGSLAALFTVPILSALQN-V-SSPYAAFGLVMCALLIVSFY---TSISGILKAEMFPAQVRALGVGLSYAV 380 (432)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCCccchhhhHHHHH
Confidence 999987766544333322222111111 0 11111111111111111111 123456789999999999999999998
Q ss_pred HHHH-HHHHHHHHHHHHHHhCCc-hhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277 428 HWVI-NFFVGLLFLRLLEQLGPQ-LLYSIFGTFCLMAVAFVKRNVVETKGKSL 478 (489)
Q Consensus 428 ~~~~-~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 478 (489)
+++. +...|.+.. +.+..|.. ..+.+.+++++++.+..+ ..|++||+.
T Consensus 381 g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~--~l~~~~~~~ 430 (432)
T PRK10406 381 ANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSL--MLHRKGKGM 430 (432)
T ss_pred HHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHH--Hhhhccccc
Confidence 8863 444555544 44555533 344444444444444433 245667764
No 13
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=280.73 Aligned_cols=379 Identities=23% Similarity=0.245 Sum_probs=264.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccc
Q 011277 87 TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYV 166 (489)
Q Consensus 87 ~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i 166 (489)
.....+..+++++|..+|++++|+++||+|||++++.++++..+++++.++++|++.+++.|+++|++.++...+...++
T Consensus 117 ~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~ 196 (521)
T KOG0255|consen 117 STLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV 196 (521)
T ss_pred HhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHH
Q 011277 167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEA 246 (489)
Q Consensus 167 ~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~ 246 (489)
+|+.++++|+.+.++....+..|.++.+..+. +.. + ||+.+++..++.++.++..++.||||||+..+++.+++.+
T Consensus 197 ~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~-~~~--~-Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~ 272 (521)
T KOG0255|consen 197 AEIVSPKQRGLALTLGGFFFVGGLMLPAGAAY-ITR--D-WRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIK 272 (521)
T ss_pred eeecCcchhhHHHHHHHHHHHHHHHHHHHHHH-HHh--h-HHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHH
Confidence 99999999999999944444444444444443 333 3 8999999888888877777777799999999999999988
Q ss_pred HHHHHhCCC----chhHHHHHH---HhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhH-HHHHHh
Q 011277 247 EFEKLLGGS----HVKSSLAEL---SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFS-SSVFKS 318 (489)
Q Consensus 247 ~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 318 (489)
.+++..+.+ ...+..++. .........+...+.++++.+.++.......+.++ .....|+. ......
T Consensus 273 ~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~-----~~~~~y~gl~~~~~~ 347 (521)
T KOG0255|consen 273 ILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWF-----VFSLVYYGLSLNVSG 347 (521)
T ss_pred HHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHH-----HHhHHHHhhhhhhhh
Confidence 888875432 111111111 11111111122446667766544433332222221 11122222 222233
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhc
Q 011277 319 AGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFAL 398 (489)
Q Consensus 319 ~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (489)
.+.+........+....++....+...|++|||.....+.....++++........... .....+...+......+
T Consensus 348 lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 423 (521)
T KOG0255|consen 348 LGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGG-WLHWILPLLGKFFIGSA--- 423 (521)
T ss_pred cCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHHHHHHHH---
Confidence 44455566667777888888889999999999999988888777777666544322110 01222222222222222
Q ss_pred CccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277 399 GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSL 478 (489)
Q Consensus 399 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 478 (489)
.. +.+.+.+|++|+..|+.+.+.++...++++.++|.+..... .......+.+++....+........+|||+++.+
T Consensus 424 -~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l 500 (521)
T KOG0255|consen 424 -FN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLR-QMFPLLGLILFGWLALLLGLLSLLLLPETKGKPL 500 (521)
T ss_pred -HH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccchHHHHHHHHHHHHHHHHhcCcccCCCCC
Confidence 22 23678999999999999999999999999999997653332 2333344444566666666666678999999999
Q ss_pred HHH
Q 011277 479 QEI 481 (489)
Q Consensus 479 ~e~ 481 (489)
+|.
T Consensus 501 ~~t 503 (521)
T KOG0255|consen 501 PGT 503 (521)
T ss_pred chh
Confidence 774
No 14
>PRK09952 shikimate transporter; Provisional
Probab=100.00 E-value=3.4e-32 Score=272.03 Aligned_cols=385 Identities=18% Similarity=0.151 Sum_probs=240.6
Q ss_pred HHHHHHHHHHhhhhccceeeccchhh-hhhhc--CCCCchhHHHHHH-----HHHHHHHHHHHHhhHhhhhhchhhHHHH
Q 011277 51 PHVLVATLSSFLFGYHLGVVNEPLES-ISLDL--GFNGNTLAEGLVV-----SMCLGGAFIGSTLSGWIADGVGRRRAFQ 122 (489)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~~~~~~~~~~~~-----s~~~~g~~ig~~~~g~l~Dr~GRr~~~~ 122 (489)
+......++.+.+.+|...++...|. +.+++ +.+.. .++.. +..+++..+|+++.|+++||+|||+++.
T Consensus 22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~ 98 (438)
T PRK09952 22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA---MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence 34566677888999999887776664 44454 44432 24433 3445667799999999999999999999
Q ss_pred HhHHHHHHHHHHHhhcchHH--------HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHH
Q 011277 123 LCALPMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL 194 (489)
Q Consensus 123 ~~~~~~~i~~~l~~~~~~~~--------~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~ 194 (489)
.+.++++++++++++++|+. .++++|+++|++.|+.++....+++|++|+++||+..+..+.+..+|..++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~ 178 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST 178 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 4888999999999999999999999999999999999999999999887776
Q ss_pred Hhhcccc--------cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHh
Q 011277 195 LIGIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSK 266 (489)
Q Consensus 195 ~~~~~l~--------~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (489)
.+...+. +..+ ||++|++..++.++........||+|+|...+++.++.+
T Consensus 179 ~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~--------------------- 236 (438)
T PRK09952 179 GLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK--------------------- 236 (438)
T ss_pred HHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc---------------------
Confidence 5443322 1234 799999887766655555566889987643221110000
Q ss_pred hccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCcc---hHHHHHHHHHHHHHHHHH
Q 011277 267 LDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAM 342 (489)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~i~~~~g~~~~g 342 (489)
. +....+.+.++++.+..... ......+. .+....+.+... +..+.+.. ......++..+++.++.|
T Consensus 237 ---~---~~~~~~~l~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g 307 (438)
T PRK09952 237 ---K---RIPVIEALLRHPGAFLKIIA--LRLCELLT-MYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFA 307 (438)
T ss_pred ---c---cCCHHHHHHHchHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00001112222222221111 11111111 111222222222 33444433 223344566677888999
Q ss_pred HHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHH
Q 011277 343 VLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMA 422 (489)
Q Consensus 343 ~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 422 (489)
+++||+|||+.+..+.++..++.......... .. . ....+...++..+..+. ..+..+.+.+|.+|++.|+++.+
T Consensus 308 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~-~-~~~~~~~~~l~~~~~~~-~~~~~~~~~~e~~p~~~r~tg~g 382 (438)
T PRK09952 308 WLADRFGRRRVYITGALIGTLSAFPFFMALEA--QS-I-FWIVFFSIMLANIAHDM-VVCVQQPMFTEMFGASYRYSGAG 382 (438)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc--CC-h-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCcchhHHHHh
Confidence 99999999998876655444433222221110 11 1 11111112222222221 12345568899999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhC--CchhhHHHHHHHHHHHHHHHhhcccCCC
Q 011277 423 VCMSVHW-VINFFVGLLFLRLLEQLG--PQLLYSIFGTFCLMAVAFVKRNVVETKG 475 (489)
Q Consensus 423 ~~~~~~~-~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~et~~ 475 (489)
+.+.+++ +++.++|.+...+.+..+ +...+...+.+++++.+.. ...+||++
T Consensus 383 ~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~~~ 437 (438)
T PRK09952 383 VGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDNQR 437 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHcccccc
Confidence 9887766 788889998888877543 3445555555555554443 34577653
No 15
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.1e-32 Score=255.03 Aligned_cols=364 Identities=21% Similarity=0.240 Sum_probs=268.4
Q ss_pred HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG 131 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~ 131 (489)
.++.+.++.|..+.+.......+|++.+|+|++.+ +.|+..|.|.+++.+++++...++||+.||++++..+.+++++
T Consensus 14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~--~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~ 91 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEG--AAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS 91 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 45677888899998888889999999999998754 5699999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011277 132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF 211 (489)
Q Consensus 132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f 211 (489)
++++++++||+.++++|++.|++.|...+....+..++.|+++|++++++...+..++...|..+|.++.+..| ||..|
T Consensus 92 n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-WR~~F 170 (394)
T COG2814 92 NLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-WRATF 170 (394)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888 69999
Q ss_pred HHHHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011277 212 WVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV 290 (489)
Q Consensus 212 ~~~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (489)
+.....+++..+ .+..+| |+ ++.++ .+.+..+..+.++++..+..
T Consensus 171 ~~ia~l~ll~~~~~~~~lP--~~-----~~~~~---------------------------~~~~~~~~~~~l~~p~v~~~ 216 (394)
T COG2814 171 LAIAVLALLALLLLWKLLP--PS-----EISGS---------------------------LPGPLRTLLRLLRRPGVLLG 216 (394)
T ss_pred HHHHHHHHHHHHHHHHhCC--Cc-----cCCCC---------------------------CCcchhHHHHHhcCchHHHH
Confidence 986655555444 345566 11 00000 00011112334555555554
Q ss_pred HHHHHHHHHHhhhhHHHHH-HhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHH
Q 011277 291 FIGSTLFALQQLSGINAIF-YFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA 366 (489)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~ 366 (489)
.....+....+ +..+ |..|...+..+++. ++..+.++++.++|+.++|++.|| +.|+.+......+.+...
T Consensus 217 l~~t~l~~~g~----F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l 291 (394)
T COG2814 217 LLATFLFMTGH----FALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALL 291 (394)
T ss_pred HHHHHHHHcch----hhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHH
Confidence 44444433333 3333 33444445566554 467888999999999999999999 777777666555555555
Q ss_pred HHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc-cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 367 IQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP-VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ 445 (489)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (489)
.+...... .+..+..+.. .++.....+ ......++.. ++.+..+.++.....+++..++..+.+.++++
T Consensus 292 ~l~~~~~~-------~~~~~~~~~~--wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~ 361 (394)
T COG2814 292 ALTFTGAS-------PALALALLFL--WGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDA 361 (394)
T ss_pred HHHHhcch-------HHHHHHHHHH--HHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44332211 1122222222 222222222 1222344533 58899999999999999999999999999999
Q ss_pred hCCchhhHHHHHHHHHHHHHHH
Q 011277 446 LGPQLLYSIFGTFCLMAVAFVK 467 (489)
Q Consensus 446 ~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
.|+.....+.+...+++..+..
T Consensus 362 ~g~~~~~~~~a~l~~~a~~~~~ 383 (394)
T COG2814 362 LGYAATGWVGAALLLLALLLAL 383 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHH
Confidence 8887777777777666665543
No 16
>PRK12307 putative sialic acid transporter; Provisional
Probab=100.00 E-value=1.2e-31 Score=268.20 Aligned_cols=390 Identities=18% Similarity=0.252 Sum_probs=263.6
Q ss_pred HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG 131 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~ 131 (489)
....+.++.+.++++.....+.+|.+.+|+|.+.+ +.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~--~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~ 96 (426)
T PRK12307 19 ALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDM--EGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVG 96 (426)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 45666777778888888888899999999998744 5678999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011277 132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF 211 (489)
Q Consensus 132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f 211 (489)
.++++++++++.++++|+++|++.|...+....++.|++|+++|+++.+++..+..+|..+++.+...+.+..+ ||+.|
T Consensus 97 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~-w~~~f 175 (426)
T PRK12307 97 TGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-WRAAF 175 (426)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888877766666566 79999
Q ss_pred HHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011277 212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF 291 (489)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (489)
++..++.++.+......||++++...+.+.+ .+.. +.........+++.++++.++...
T Consensus 176 ~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 234 (426)
T PRK12307 176 FVGLLPVLLVIYIRARAPESKEWEEAKLSGK-----------GKHS----------QSAWSVFSLSMKGLFNRAQFPLTL 234 (426)
T ss_pred HHHHHHHHHHHHHHHHCCCChHHHHhhhhcc-----------cccc----------ccchhhhhHHHHHHHhhchHHHHH
Confidence 8865554444433344577654422110000 0000 000000112345566655555433
Q ss_pred HHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHH
Q 011277 292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368 (489)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~ 368 (489)
........ .+........+.+..++..+.+. +.......++.+++.++.+++.||++||+.+..+.....+.....
T Consensus 235 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 313 (426)
T PRK12307 235 CVFIVLFS-IFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPL 313 (426)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 32222111 11111122233444445555543 344556678888999999999999999998877665544443322
Q ss_pred HHHhhccCCCchhhHHHHHHHHHHHHHH-hcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277 369 VAASSSYIPGSASLYLSVGGMLMFVLTF-ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 447 (489)
.... ...... + ..+.+...+ ..+..+....++.|.+|++.|++++|+...+.++++.++|.+.+.+.+..|
T Consensus 314 ~~~~-----~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g 385 (426)
T PRK12307 314 FRIP-----QDNYLL--L-GACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG 385 (426)
T ss_pred HHHc-----cccHHH--H-HHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence 2111 111111 1 112222222 223334444577899999999999999999999999999999888888777
Q ss_pred Cchh-hHHHHHHHHHHHHHHHhhcccCC
Q 011277 448 PQLL-YSIFGTFCLMAVAFVKRNVVETK 474 (489)
Q Consensus 448 ~~~~-~~~~~~~~~~~~~~~~~~~~et~ 474 (489)
.... +.+.+..+...........||++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (426)
T PRK12307 386 LGAALTFIVAFWTATILLIIGLSIPDRL 413 (426)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCChhh
Confidence 5432 33333334444444444566653
No 17
>PRK03545 putative arabinose transporter; Provisional
Probab=100.00 E-value=6.8e-31 Score=259.37 Aligned_cols=367 Identities=17% Similarity=0.168 Sum_probs=252.1
Q ss_pred HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~ 132 (489)
...+.++.+....+.....+.+|.+.+|+|.+.+ +.++..+.+.+++.+++++.|+++||+|||+++..+.+++.+++
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~--~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 88 (390)
T PRK03545 11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTA--QVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASH 88 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 3444555555555544555668999999998754 56899999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (489)
Q Consensus 133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~ 212 (489)
+++++++|++.++++|+++|++.+...+....++.|++|+++|+++.+++..+..+|..+++.++..+.+..+ ||+.|+
T Consensus 89 ~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~ 167 (390)
T PRK03545 89 VLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-WRTTFL 167 (390)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-HHHHHH
Confidence 9999999999999999999999988888888999999999999999999999999999999988877766666 699998
Q ss_pred HHHHHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011277 213 VSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF 291 (489)
Q Consensus 213 ~~~i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (489)
+..+..++..+. ....||.|+ +++++ ....++.++++.++...
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~~~-----~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 211 (390)
T PRK03545 168 AIGGGALITLLLLIKLLPLLPS-----EHSGS-------------------------------LKSLPLLFRRPALVSLY 211 (390)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC-----CCcch-------------------------------HHHHHHHHhCcHHHHHH
Confidence 866555444333 334565431 00000 00122344455544433
Q ss_pred HHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHH
Q 011277 292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368 (489)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~ 368 (489)
...++.....+... .+..+...+..+.+ .+......+++.+++.++.++++||++||+.. .+.....++....
T Consensus 212 ~~~~~~~~~~~~~~---~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l 287 (390)
T PRK03545 212 LLTVVVVTAHFTAY---SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLL 287 (390)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHH
Confidence 32222222111111 11122222333443 34555667788999999999999999988654 3333333332222
Q ss_pred HHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011277 369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP 448 (489)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 448 (489)
.... .. .+......++++.+. .+.++....+..|..| +.|++++|+.+...+++..+++.+.+.+.+..|.
T Consensus 288 ~~~~-----~~--~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~ 358 (390)
T PRK03545 288 LPAA-----NS--EWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGL 358 (390)
T ss_pred HHHh-----ch--HHHHHHHHHHHHHHH-hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 1111 11 111111222222222 2234444556778877 6889999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHhhcc
Q 011277 449 QLLYSIFGTFCLMAVAFVKRNVV 471 (489)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~ 471 (489)
...+.+.+++.+++.++.++..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 359 SSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcc
Confidence 88888888888887776665543
No 18
>PRK11663 regulatory protein UhpC; Provisional
Probab=100.00 E-value=1.2e-31 Score=267.96 Aligned_cols=397 Identities=14% Similarity=0.089 Sum_probs=258.8
Q ss_pred HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~ 133 (489)
....++.+...++...++..+|.+.+++|++.+ +.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~ 103 (434)
T PRK11663 26 ITMYLGYALFYFTRKSFNAAMPEMLADLGLSRS--DIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINI 103 (434)
T ss_pred HHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHH
Confidence 344555556666666677888999999998744 568999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (489)
Q Consensus 134 l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~ 213 (489)
+.+.++|++.+++.|++.|++.|...+....++.|++|+++|++++++++.+..+|..+++.++..+.+..+ ||+.|++
T Consensus 104 ~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~f~~ 182 (434)
T PRK11663 104 LFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WRYGMMI 182 (434)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HHHHHHH
Confidence 999999999999999999999998888888999999999999999999999999998888887777666666 7999987
Q ss_pred HHHHHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHH-HhhhccchhHHH
Q 011277 214 SIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFE-ELLYGRHFRVVF 291 (489)
Q Consensus 214 ~~i~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 291 (489)
.++..++. .+..++++|+|++...+...++.++. ++ ..+ +.++.+.+....++ ..++++.++...
T Consensus 183 ~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (434)
T PRK11663 183 AGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA-LE---------LAQ---QQEGAGLSRKEILTKYVLLNPYIWLLS 249 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc-cc---------cch---hccccCCChhhhHHHHHhcChHHHHHH
Confidence 65554433 33445678887642111100000000 00 000 00000000000011 123333333322
Q ss_pred HHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhc--CCchhH-HHhhHHHHHH
Q 011277 292 IGSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKL--GRKALL-QWSFFSMAVS 364 (489)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~-~~~~~~~~i~ 364 (489)
....... ........+.+.++ +..+.+. +.......++..++.++.|+++||+ ++|+.. ........+.
T Consensus 250 ~~~~~~~----~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~ 325 (434)
T PRK11663 250 FSYVLVY----VVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLS 325 (434)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHH
Confidence 2211111 11122233444444 3345543 4455667788899999999999998 333322 2222222222
Q ss_pred HHHHHHHhhccCCCchhhHHHHHHHHHHHHHH-hcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 365 MAIQVAASSSYIPGSASLYLSVGGMLMFVLTF-ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL 443 (489)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~ 443 (489)
........ .... ... .. +.+..++ ..+.......+..|.+|++.|++++|+.+..+++++.++|.+.+.+.
T Consensus 326 ~~~~~~~~----~~~~-~~~-~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~ 397 (434)
T PRK11663 326 VGSLWLMP----FASY-VMQ-AA--CFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVL 397 (434)
T ss_pred HHHHHHcc----cccH-HHH-HH--HHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 21111111 1111 111 11 1111111 11222223346789999999999999999999999999999999999
Q ss_pred HHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277 444 EQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSL 478 (489)
Q Consensus 444 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 478 (489)
+..|+...|.+.+.++++..+..+...+++++++-
T Consensus 398 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (434)
T PRK11663 398 EIWHWTGFFVVISIAAGISALLLLPFLNAQAPREA 432 (434)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHhhhchhcc
Confidence 98998888888888888877766666777666643
No 19
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=100.00 E-value=2.1e-31 Score=264.22 Aligned_cols=385 Identities=15% Similarity=0.123 Sum_probs=249.2
Q ss_pred HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG 131 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~ 131 (489)
....+++..+++.+|-...+...|.+.+|+|.+.+ +.++..+.+.+++.+++++.|+++||+|||+++..++++++++
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~--~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSAT--MFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHH--HHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 44555666667788888888888999999988744 5689999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc------CCc
Q 011277 132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE------IAG 205 (489)
Q Consensus 132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~------~~~ 205 (489)
+.++++++|++.+++.|+++|++.|...+....++.|++|+++|++++++++.+..+|..++++++..+.+ ..+
T Consensus 87 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g 166 (412)
T TIGR02332 87 STATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKG 166 (412)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence 99999999999999999999999999988888899999999999999999999999998888888765532 235
Q ss_pred hhHHHHHHHHHHHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHH-HhCCCchhHHHHHHHhhccCCCCc-chhHHHhh
Q 011277 206 WWRICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEK-LLGGSHVKSSLAELSKLDRGDDGD-IVKFEELL 282 (489)
Q Consensus 206 ~wr~~f~~~~i~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 282 (489)
||+.|++.+++.++. .+..+++||+|+.. +.-.++.++..++ ..+.... .++.++..+.++.. ...+++++
T Consensus 167 -wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T TIGR02332 167 -WQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLT---LEQPEGAFAHAAMPQRSMLREIF 240 (412)
T ss_pred -hhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhcccc---ccccccccccccccHHHHHHHhc
Confidence 799999876666544 34456779998420 1001111111111 1000000 00000000000000 11122222
Q ss_pred hccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhc--CCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhH-HH
Q 011277 283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA--GLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALL-QW 356 (489)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~-~~ 356 (489)
++.++... ..+.+ .......+..+.|.++++. +.+ .+.......++..+|.++.|+++||++||+.. ..
T Consensus 241 -~~~~~~~~---~~~~~-~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~ 315 (412)
T TIGR02332 241 -TPAIMLYT---LAYFC-LTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTAL 315 (412)
T ss_pred -ChHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHH
Confidence 23322221 12221 1222333445666666553 222 34556677788999999999999999977743 33
Q ss_pred hhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHH
Q 011277 357 SFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVG 436 (489)
Q Consensus 357 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 436 (489)
......++..+ . .. ... ... .......+..+.. ...+.......|.+|++.|+++.|+.+..++++++++|
T Consensus 316 ~~~~~~~~~~~-~-~~---~~~-~~~--~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p 386 (412)
T TIGR02332 316 PYLFAAAGWLL-A-SA---TDH-NLI--QLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSP 386 (412)
T ss_pred HHHHHHHHHHH-H-Hh---cCC-HHH--HHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhh
Confidence 33333322211 1 11 111 111 1111111111111 12233445567889999999999999999999999999
Q ss_pred HHHHHHHHHhC-CchhhHHHHHH
Q 011277 437 LLFLRLLEQLG-PQLLYSIFGTF 458 (489)
Q Consensus 437 ~~~~~l~~~~g-~~~~~~~~~~~ 458 (489)
.+.+.+.+..| +...+.+.+++
T Consensus 387 ~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 387 FLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhcccccccCCCCchhHHHHHHH
Confidence 98888877765 66666555443
No 20
>PRK15075 citrate-proton symporter; Provisional
Probab=100.00 E-value=2.8e-30 Score=258.33 Aligned_cols=387 Identities=20% Similarity=0.278 Sum_probs=240.0
Q ss_pred HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHH-----HHHHHHHHHhhHhhhhhchhhHHHHHhHH
Q 011277 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMC-----LGGAFIGSTLSGWIADGVGRRRAFQLCAL 126 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~-----~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~ 126 (489)
.....+++.+++.+|...++...|.+.+|++.+..+.. .+..+.. .++..+|+++.|+++||+|||++++.+.+
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 94 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA-SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence 35667888999999999999999999999988755432 2333222 22234789999999999999999999999
Q ss_pred HHHHHHHHHhhcchHHH--------HHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhc
Q 011277 127 PMIIGASISATTRNLIG--------MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI 198 (489)
Q Consensus 127 ~~~i~~~l~~~~~~~~~--------l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~ 198 (489)
++++++++++++++++. ++++|+++|++.|...+....+++|++|+++|+++++++.....+|...++.++.
T Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~ 174 (434)
T PRK15075 95 IMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGY 174 (434)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999874 6889999999999998888899999999999999999988887777766666655
Q ss_pred ccc--------cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccC
Q 011277 199 PVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRG 270 (489)
Q Consensus 199 ~l~--------~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (489)
.+. +..+ ||++|++..+...+..+.....||++++...+++ .
T Consensus 175 ~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--------------~--------------- 224 (434)
T PRK15075 175 LLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR--------------P--------------- 224 (434)
T ss_pred HHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc--------------c---------------
Confidence 431 2345 7999987644433332223334454322110000 0
Q ss_pred CCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cCCCc---chHHHHHHHHHHHHHHHHHHHhh
Q 011277 271 DDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLSS---GLANVFVGIANLLGSVVAMVLMD 346 (489)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~g~~~~g~l~d 346 (489)
.....+++..++ .+........... .....+...+|.+.++++ .+.+. ++......++.+++.++.|+++|
T Consensus 225 --~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~D 299 (434)
T PRK15075 225 --SMREIFRSLAAN--WRIVLAGMLMVAM-TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSD 299 (434)
T ss_pred --ccccHHHHHHHh--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111111 1111111111111 222233444555655544 45543 34556677888899999999999
Q ss_pred hcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHH
Q 011277 347 KLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMS 426 (489)
Q Consensus 347 r~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 426 (489)
|+|||+.+..+.....+........... ....... .....+....++. ..+....+..|.+|++.|+++.++...
T Consensus 300 r~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g~~~~ 374 (434)
T PRK15075 300 RIGRRPVLIAFTVLAILTAYPALSWLVA--APSFARM--LAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFSLAYS 374 (434)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHc--CCchHHH--HHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchheeHHHH
Confidence 9999998766544332221111111111 1111111 1111111222221 223344578999999999999999877
Q ss_pred HHHH-HHHHHHHHHHHHHHHhCCch---hhHHHHHHHHHHHHHHHhhcccCCCCCHHHHH
Q 011277 427 VHWV-INFFVGLLFLRLLEQLGPQL---LYSIFGTFCLMAVAFVKRNVVETKGKSLQEIE 482 (489)
Q Consensus 427 ~~~~-~~~~~~~~~~~l~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~et~~~~~~e~~ 482 (489)
+++. ++.++|.+.+.+.+..|..+ .+.+.+.++..... ...++-+|..++..|
T Consensus 375 ~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 431 (434)
T PRK15075 375 LATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIAT---LVLYRRRGARLQAAE 431 (434)
T ss_pred HHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH---HHhccccchhhhhhh
Confidence 7776 47788888888888877532 23333333333322 345566666666554
No 21
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=100.00 E-value=7.5e-31 Score=255.04 Aligned_cols=348 Identities=14% Similarity=0.083 Sum_probs=228.3
Q ss_pred eeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHH
Q 011277 69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR 148 (489)
Q Consensus 69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R 148 (489)
.+++.+|.+.+|+|++. .+.|++.+.+.+|+.+++++.|+++||+|||+++..+......+.......+|++.+++.|
T Consensus 9 ~~~~~lp~i~~~~~~s~--~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R 86 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSK--EELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQ 86 (368)
T ss_pred HHHhhHHHHHHHhCcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 35678899999999864 4568999999999999999999999999999987766655555443333447999999999
Q ss_pred HHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHH-HHHHHHhhh
Q 011277 149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA-AILCLAMVF 227 (489)
Q Consensus 149 ~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~-~~~~~~~~~ 227 (489)
+++|++.+. .......++|++|+++|+++.++...+..+|..++++++..+.+..+ ||+.|++.+++. +...+..++
T Consensus 87 ~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~~~~~~ 164 (368)
T TIGR00903 87 LLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGIILVLAA 164 (368)
T ss_pred HHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999986 44555667999999999999999999999999999999888877667 699998854444 344455667
Q ss_pred ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHH
Q 011277 228 CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINA 307 (489)
Q Consensus 228 ~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (489)
+||+|++. ++..+.+ +. ..+++++++++.++.......+... ..+.
T Consensus 165 lp~~p~~~---~~~~~~~-------------~~--------------~~~~~~ll~~~~~~~~~~~~~~~~~----~~~~ 210 (368)
T TIGR00903 165 LPALPFQA---AEGFGFK-------------DA--------------VKEFGALAGRKDLWIIGAILGFGVA----LFDN 210 (368)
T ss_pred cCCCCCCC---CCCcchH-------------HH--------------HHHHHHHHcChhHHHHHHHHHHHHH----HHHH
Confidence 89988641 1100000 00 0124456666665554433333222 2233
Q ss_pred HHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCc---hhHHH-hhHHHHHHHHHHHHHhhccCCCchhhH
Q 011277 308 IFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK---ALLQW-SFFSMAVSMAIQVAASSSYIPGSASLY 383 (489)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr---~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~ 383 (489)
+..|.+.++++.+.+.. ......+..+.+.+..++++||..|| +.... .....++...+. ... .+..
T Consensus 211 ~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~--~~~---~~~~--- 281 (368)
T TIGR00903 211 LAIWLEAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLAL--AFE---LNRL--- 281 (368)
T ss_pred HHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH--HHc---cccH---
Confidence 44566666666555432 23334455556666678889988654 22221 222222222111 111 1111
Q ss_pred HHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHH
Q 011277 384 LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV 463 (489)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 463 (489)
..+....+.. .+..+..+..+.+.+|++|++.|+++.|+.+..+++++..+|...+.+.. +....|.+++++.+++.
T Consensus 282 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~ 358 (368)
T TIGR00903 282 ALFAFIGIAG-LLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAF 358 (368)
T ss_pred HHHHHHHHHH-HhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHH
Confidence 1111111111 12222334466789999999999999999999999999999988776653 55566777777777766
Q ss_pred HHH
Q 011277 464 AFV 466 (489)
Q Consensus 464 ~~~ 466 (489)
+.+
T Consensus 359 ~~~ 361 (368)
T TIGR00903 359 AIA 361 (368)
T ss_pred HHH
Confidence 654
No 22
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=100.00 E-value=3.2e-30 Score=254.36 Aligned_cols=374 Identities=13% Similarity=0.084 Sum_probs=249.0
Q ss_pred HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG 131 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~ 131 (489)
....++++.++.... ...++.+|.+.+|+|++.+ +.++..+.+.+++.+++++.|+++||+|||+++..+..+++++
T Consensus 11 ~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~--~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~ 87 (393)
T PRK09705 11 LLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFS--VAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG 87 (393)
T ss_pred HHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH
Confidence 334444444443333 4577899999999998754 5689999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011277 132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF 211 (489)
Q Consensus 132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f 211 (489)
.+++++++|++.++++|+++|++.|...+....++.|++| ++|+++++.+..+..+|..+++.++..+.++...||+.+
T Consensus 88 ~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~ 166 (393)
T PRK09705 88 ALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTL 166 (393)
T ss_pred HHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999988888899999987 789999999999888888888887766655542268776
Q ss_pred HHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011277 212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF 291 (489)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (489)
....+..++..+..+...+ +++++.+ +.+. +..+.+++++.+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~-----------------------~~~~----~~~~~l~~~~~~~l~ 211 (393)
T PRK09705 167 AWWALPAVVALFAWWWQSA--------REVASSH-----------------------KTTT----TPVRVVFTPRAWTLG 211 (393)
T ss_pred HHHHHHHHHHHHHHHHHhc--------CCCcccc-----------------------CCCc----CCcccccCHhHHHHH
Confidence 5443333333222221111 0000000 0000 001122223333222
Q ss_pred HHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHH
Q 011277 292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368 (489)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~ 368 (489)
....+. .. .......+.+..+.+.+.+ .+.......++.++|.++.+++.||++||+....+..+..++..+.
T Consensus 212 ~~~~~~---~~-~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~ 287 (393)
T PRK09705 212 VYFGLI---NG-GYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGF 287 (393)
T ss_pred HHHHHH---HH-HHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 211111 11 1222333444444444544 3556677889999999999999999999988877765555544433
Q ss_pred HHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277 369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIF-PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 447 (489)
.... ... .... ..+...+.+ +..|.......+.+ |++.|++..++.+.++++++.++|.+.+.+.|..|
T Consensus 288 ~~~~-----~~~-~~~~---~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g 357 (393)
T PRK09705 288 IWLP-----LQL-PVLW---AMVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG 357 (393)
T ss_pred HHcc-----chH-HHHH---HHHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2111 111 1111 111122221 12233333445555 56889999999999999999999999999999887
Q ss_pred C-chhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277 448 P-QLLYSIFGTFCLMAVAFVKRNVVETKGKSL 478 (489)
Q Consensus 448 ~-~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 478 (489)
. ...+.+.+.+++...+......|||++|.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 358 NYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 4 456666666666666666778999988754
No 23
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=100.00 E-value=1.3e-30 Score=258.74 Aligned_cols=380 Identities=20% Similarity=0.227 Sum_probs=251.4
Q ss_pred HHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHH
Q 011277 51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII 130 (489)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i 130 (489)
+....+.++.+.++++....++..|.+.+++|.+.+ +.++..+.+.++..+++++.|+++||+|||+++..+.++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~--~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 89 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTV--DAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA 89 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345667778888899988889999999999998754 568999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc-hhHH
Q 011277 131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRI 209 (489)
Q Consensus 131 ~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-~wr~ 209 (489)
++++++++++++.+++.|+++|++.+...+....++.|++|+++|+++.++...+..+|..+++.++..+.+..+ .||+
T Consensus 90 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~ 169 (405)
T TIGR00891 90 GTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRA 169 (405)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH
Confidence 999999999999999999999999999999999999999999999999999999999998888887766554333 2799
Q ss_pred HHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhH
Q 011277 210 CFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV 289 (489)
Q Consensus 210 ~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (489)
.|++..++.++..+.....||++++...+++.++..+..++..+.++.... .. .......++.. .+....
T Consensus 170 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~-~~~~~~ 239 (405)
T TIGR00891 170 LFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIAN--IV-------MTLAAAMVQSA-GKRWPT 239 (405)
T ss_pred HHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhh--hh-------hhhhHHhhhhh-hhhhHH
Confidence 998876666665556667899876543222211111111111111000000 00 00000011100 011111
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHH
Q 011277 290 VFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM 365 (489)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~ 365 (489)
.........+.... ......+.+..+ +..+.+ .+.......++.+++.++.+++.||+|||+.+..+.....+..
T Consensus 240 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 318 (405)
T TIGR00891 240 FVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLI 318 (405)
T ss_pred HHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHH
Confidence 11111111111111 111112222222 334444 3445566778889999999999999999998776655433222
Q ss_pred HHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 366 AIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ 445 (489)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (489)
...... .... +.......+.. ....+..+....+..|.+|++.|+++.|+.+.+.++++.++|.+.+.+.+.
T Consensus 319 ~~~~~~-----~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~ 390 (405)
T TIGR00891 319 IPVFAI-----GANV--AVLGLGLFFQQ-MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR 390 (405)
T ss_pred HHHHHh-----CCch--HHHHHHHHHHH-HHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221111 1111 11111111111 122233445556789999999999999999999999999999999999888
Q ss_pred hC-Cchh
Q 011277 446 LG-PQLL 451 (489)
Q Consensus 446 ~g-~~~~ 451 (489)
.| +...
T Consensus 391 ~g~~~~~ 397 (405)
T TIGR00891 391 LDEYGTA 397 (405)
T ss_pred ccccchh
Confidence 87 4443
No 24
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=100.00 E-value=4.9e-30 Score=254.84 Aligned_cols=371 Identities=21% Similarity=0.258 Sum_probs=253.1
Q ss_pred HHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHH
Q 011277 50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI 129 (489)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~ 129 (489)
+....++....++++++....+...|.+.+|+|.+. .+.++..+.+.++..+++++.|+++||+|||+++..+.++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (406)
T PRK11551 14 ALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDV--AQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 345566677888889998888989999999998864 456899999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHH
Q 011277 130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI 209 (489)
Q Consensus 130 i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~ 209 (489)
++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++.+++..+..+|..+++.++..+.+..+ ||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~ 170 (406)
T PRK11551 92 LFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA-WRH 170 (406)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-HHH
Confidence 9999999999999999999999999999888889999999999999999999999999998888888766666556 699
Q ss_pred HHHHHHHHHHH-HHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhc---c
Q 011277 210 CFWVSIVPAAI-LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG---R 285 (489)
Q Consensus 210 ~f~~~~i~~~~-~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 285 (489)
.|++..+..++ ..+...++||+|++...+.+.++.++. .+..++. +
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~ 220 (406)
T PRK11551 171 IFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPV------------------------------LRALFGEGRAT 220 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhh------------------------------HHHHhhhhhhh
Confidence 88875444333 333455679987653221111100000 0000100 1
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHH
Q 011277 286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA 362 (489)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~ 362 (489)
............ .........+.+...+..+.+ .+.......++..++.++.|++.||+|||+.+........
T Consensus 221 ~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 296 (406)
T PRK11551 221 ATLLLWISYFFT----LIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGIL 296 (406)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111111111111 111122223444455555544 3556666778899999999999999999998776554444
Q ss_pred HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 363 VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL 442 (489)
Q Consensus 363 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l 442 (489)
++....... .. ... .. ...+..... ..+..+....+..|.+|++.|+++.|+.+.+.++++.++|.+.+.+
T Consensus 297 ~~~~~~~~~-----~~-~~~-~~-~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l 367 (406)
T PRK11551 297 ASLAALAAA-----PS-FAG-ML-LAGFAAGLF-VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQL 367 (406)
T ss_pred HHHHHHHhc-----Cc-HHH-HH-HHHHHHHHH-HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhh
Confidence 433322211 11 111 11 111111111 1223445566889999999999999999999999999999998888
Q ss_pred HHHhCCc-hhhHHHHHHHHHHHHHH
Q 011277 443 LEQLGPQ-LLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 443 ~~~~g~~-~~~~~~~~~~~~~~~~~ 466 (489)
.+..+.. ..+.....+.+++.+..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (406)
T PRK11551 368 LALGRSTVGVIGASIPVILVAALAA 392 (406)
T ss_pred hccCCchHHHHHHHHHHHHHHHHHH
Confidence 7764432 33333443444443333
No 25
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=100.00 E-value=2.6e-31 Score=268.20 Aligned_cols=387 Identities=15% Similarity=0.122 Sum_probs=240.2
Q ss_pred HHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH
Q 011277 55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI 134 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l 134 (489)
.+.++.++...+-..++...|.+.+|+|++.+ +.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++
T Consensus 33 ~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~--~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~ 110 (467)
T PRK09556 33 VVFIGYLTMYLIRKNFKAAQNDMISTYGLSTT--ELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLG 110 (467)
T ss_pred HHHHHHHHHHHHhcChhhhhHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHH
Confidence 33444444444666778889999999998744 5689999999999999999999999999999998888887777665
Q ss_pred Hhh-----cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC--Cchh
Q 011277 135 SAT-----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI--AGWW 207 (489)
Q Consensus 135 ~~~-----~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~--~~~w 207 (489)
.+. ++|++.+++.|+++|++.|...+....+++|++|+++||++++++..+..+|..+++++...+... .++|
T Consensus 111 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~ 190 (467)
T PRK09556 111 FGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHV 190 (467)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcc
Confidence 554 689999999999999999998888889999999999999999999999999988777765443322 2347
Q ss_pred HHHHHHHHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhH-HHhhhcc
Q 011277 208 RICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKF-EELLYGR 285 (489)
Q Consensus 208 r~~f~~~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 285 (489)
|..|.+.++..++..+ ..++.+++|+.. +..++ ++..+ . .... ++ +..++.+......+ +..++++
T Consensus 191 ~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~~~----~-~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~ 258 (467)
T PRK09556 191 IGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEIFG----E-PISE--ED-KETESTDMTKWQIFVEYVLKNP 258 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhccc----C-ccch--hh-hccccccCcHHHHHHHHHHcCh
Confidence 8888765554444433 344456665421 11111 00000 0 0000 00 00000000000111 1244555
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHH
Q 011277 286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM 361 (489)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 361 (489)
.++......++... .......+.+..+ +..+.+. +.......++..++.+++|+++||++||+.........
T Consensus 259 ~~~~~~~~~~~~~~----~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~ 334 (467)
T PRK09556 259 VIWLLCFANIFLYI----VRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALA 334 (467)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 54443332222111 1122334444444 3355543 34555667888999999999999999988765543333
Q ss_pred HHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHH-HHHHHHHHHH
Q 011277 362 AVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVGLLFL 440 (489)
Q Consensus 362 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~ 440 (489)
.+......... .... .......+.++.. ..+..........|.+|++.|+++.|+.+..+++ ++.++|.+.+
T Consensus 335 ~~~~~~~~~~~----~~~~--~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G 407 (467)
T PRK09556 335 LIIFTLGVYQH----ATSE--YMYLASLFALGFL-VFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLG 407 (467)
T ss_pred HHHHHHHHHHh----cCcH--HHHHHHHHHHHHH-HhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHH
Confidence 32221111111 1111 1111111111111 1111112224567999999999999999999997 6688999988
Q ss_pred HHHH------------HhCCchhhHHHHHHHHHHHHHH
Q 011277 441 RLLE------------QLGPQLLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 441 ~l~~------------~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
.+.+ ..++...|.+++++++++.+..
T Consensus 408 ~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 445 (467)
T PRK09556 408 MIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM 445 (467)
T ss_pred HHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence 8888 4567777777766666654433
No 26
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.98 E-value=8.2e-30 Score=258.76 Aligned_cols=378 Identities=13% Similarity=0.061 Sum_probs=249.8
Q ss_pred HHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHH
Q 011277 51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII 130 (489)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i 130 (489)
..+..++++.++...|.++++.++|.+.+|+|.+.++ .+|..+.|.+++.++.+++|+++||+|||+++..+.+++.+
T Consensus 6 ~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~--~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 6 LTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNE--LLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH--HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567778889999999999999999999999987554 57899999999999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccC-CcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHH
Q 011277 131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI 209 (489)
Q Consensus 131 ~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~ 209 (489)
++++++.++|++.++++|+++|+|.+...+.....+.+.+ |+++|+++.+++.....+|..+||.+++.+.+..+ |||
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g-wr~ 162 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY-WGS 162 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHH
Confidence 9999999999999999999999999988777766676665 78999999999999999999999999998888777 699
Q ss_pred HHHHHHHHHHHHH-HHhhhccCChHHHHhcCCHHHHHHH------------HHHHhCCC-chhHHH----------HHHH
Q 011277 210 CFWVSIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAE------------FEKLLGGS-HVKSSL----------AELS 265 (489)
Q Consensus 210 ~f~~~~i~~~~~~-~~~~~~~Esp~~l~~~~~~~~~~~~------------~~~~~~~~-~~~~~~----------~~~~ 265 (489)
.|++.....++.. +..+++||+|+. .+++.+..... ++...+.. ...... ....
T Consensus 163 ~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~ 240 (495)
T PRK14995 163 VFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI 240 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence 9998754444433 344556776531 11111111000 00000000 000000 0000
Q ss_pred hhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHH-hcCC---CcchHHHHHHHHHHHHHHHH
Q 011277 266 KLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGL---SSGLANVFVGIANLLGSVVA 341 (489)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~i~~~~g~~~~ 341 (489)
..+...+ ++..-.++++++.+.......+..... .....++.+..++ ..+. ..+....+..++..++.++.
T Consensus 241 ~~e~~~~-~p~~~~~lf~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~ 315 (495)
T PRK14995 241 RTQLAAS-RPMIDMRLFTHRIILSGVVMAMTAMIT----LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIA 315 (495)
T ss_pred HHHhcCC-CCCcCHHHhCCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111 111113456666555443332222221 1122223333322 2343 35677788889999999999
Q ss_pred HHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHH
Q 011277 342 MVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAM 421 (489)
Q Consensus 342 g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 421 (489)
|++.||+|+|+.+..+.....++...+.... . .... +......++.+++.+... +.......+..|++.++.+.
T Consensus 316 g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~--~-~~~~--~~~~~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~g~~~ 389 (495)
T PRK14995 316 GILVSRLGLRLVATGGMALSALSFYGLAMTD--F-STQQ--WQAWGLMALLGFSAASAL-LASTSAIMAAAPPEKAAAAG 389 (495)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHhc--C-CCch--HHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCHHhcchHH
Confidence 9999999999988777666655554433221 1 1111 111112223333333222 22333556778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011277 422 AVCMSVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~l~~ 444 (489)
++.+....+++.+++.+.+.+++
T Consensus 390 ~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 390 AIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888876655543
No 27
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.97 E-value=2.1e-30 Score=256.16 Aligned_cols=380 Identities=17% Similarity=0.163 Sum_probs=249.3
Q ss_pred ccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHH
Q 011277 65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM 144 (489)
Q Consensus 65 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l 144 (489)
++...++...|.+.+++|.+.+ +.+++.+.+.++..++.++.|+++||+|||+++..+.++++++..++++++|++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (399)
T TIGR00893 8 LDRANLSFAAPMLQEDLGLSAA--QYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSL 85 (399)
T ss_pred HHHHhhhHhHHHHHHhhCCChh--hHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHH
Confidence 3445566778889999988644 56899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011277 145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA 224 (489)
Q Consensus 145 ~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~ 224 (489)
+++|+++|++.+...+....++.|++|+++|++..++......+|..+++.++..+.+..+ ||+.|++.++..++..+.
T Consensus 86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 164 (399)
T TIGR00893 86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGIIWGVL 164 (399)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888876666666 699998765555544333
Q ss_pred -hhhccCChHHHHhcCCHHHHHH-HHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277 225 -MVFCAESPHWLYKKGRTAEAEA-EFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL 302 (489)
Q Consensus 225 -~~~~~Esp~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (489)
.+..||+|+. .+...++.++ ..++... +. +.++.++......++.+++++++.......+.....
T Consensus 165 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 231 (399)
T TIGR00893 165 WLKFIPDPPQK--AKWLTEEEKYIVVGGLLA---------EQ-QGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGL- 231 (399)
T ss_pred hhheecCCCCc--cccCCHHHHhhcchhhcc---------cc-ccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHH-
Confidence 3446666531 0111111110 0000000 00 001111112233455666555544443333222211
Q ss_pred hhHHHHHHhHHHHH-HhcCC---CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHH-hhHHHHHHHHHHHHHhhccCC
Q 011277 303 SGINAIFYFSSSVF-KSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW-SFFSMAVSMAIQVAASSSYIP 377 (489)
Q Consensus 303 ~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~-~~~~~~i~~~~~~~~~~~~~~ 377 (489)
.....+.+..+ +..+. ..+.......++.+++.++.++++||++||+.... ......++........... .
T Consensus 232 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 307 (399)
T TIGR00893 232 ---GFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT-N 307 (399)
T ss_pred ---HHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh-c
Confidence 12222223222 22333 34566677778889999999999999999862111 1111111111111000000 0
Q ss_pred CchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhHHHH
Q 011277 378 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFG 456 (489)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~ 456 (489)
.....+..+. ......+..+..|....+..|.+|++.|+++.|+.+.+.++++.++|.+.+.+.+..| +...+.+.+
T Consensus 308 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~ 385 (399)
T TIGR00893 308 YVNIPYAALA--LVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVA 385 (399)
T ss_pred cchhHHHHHH--HHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHH
Confidence 0111111111 1111222333567777899999999999999999999999999999999988888877 777777777
Q ss_pred HHHHHHHHHH
Q 011277 457 TFCLMAVAFV 466 (489)
Q Consensus 457 ~~~~~~~~~~ 466 (489)
.+++++.+..
T Consensus 386 ~~~~~~~~~~ 395 (399)
T TIGR00893 386 ALALIGALSY 395 (399)
T ss_pred HHHHHHHHHH
Confidence 7766665543
No 28
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.97 E-value=4.7e-29 Score=254.39 Aligned_cols=397 Identities=18% Similarity=0.235 Sum_probs=254.1
Q ss_pred HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG 131 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~ 131 (489)
....+.++.++++++....++.+|.+.+++|.+.+ +.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 98 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTV--QAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVG 98 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 45566777788888888888889999999988744 4578899999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011277 132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF 211 (489)
Q Consensus 132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f 211 (489)
.++.++++|++.+++.|++.|++.+...+....++.|.+|+++|++..+++..+..+|..+++.++..+.+..+ ||+.|
T Consensus 99 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~f 177 (496)
T PRK03893 99 TLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG-WRALF 177 (496)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHH
Confidence 99999999999999999999999999888888999999999999999999999999999989888877766666 69999
Q ss_pred HHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCc-hhHHH-H-----HH-HhhccCCCCcchh------
Q 011277 212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSH-VKSSL-A-----EL-SKLDRGDDGDIVK------ 277 (489)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~-~-----~~-~~~~~~~~~~~~~------ 277 (489)
++..++.++.++.....||++++...+++.++.++..+.....+. ..... . .. .............
T Consensus 178 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (496)
T PRK03893 178 FIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLL 257 (496)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence 876555555545556678887653322111111111111100000 00000 0 00 0000000000000
Q ss_pred -------HHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHH-hcCCC---cchHHHHHHHHHHHHHHHHHHHhh
Q 011277 278 -------FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLS---SGLANVFVGIANLLGSVVAMVLMD 346 (489)
Q Consensus 278 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~i~~~~g~~~~g~l~d 346 (489)
+......++.+ .........+..+........+.+..++ ..+.+ .+.......++..++.++.|+++|
T Consensus 258 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~d 336 (496)
T PRK03893 258 CAAIFISFMVQSSGKRWP-TGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGD 336 (496)
T ss_pred HHHHHHHHHHHhcccchh-HHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000 0000000000000000112223344442 44544 345666777888999999999999
Q ss_pred hcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHH
Q 011277 347 KLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMS 426 (489)
Q Consensus 347 r~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 426 (489)
|+|||+.+..+..+..+..+..... ... ..+.. ...+........+..+....+..|.+|++.|++++++.+.
T Consensus 337 r~g~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 409 (496)
T PRK03893 337 WLGTRKAYVCSLLISQLLIIPVFAI-----GGA-NVWVL-GLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYN 409 (496)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhhc-----ccc-HHHHH-HHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhh
Confidence 9999998776654444333222111 111 11111 1111111122333444555678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHH
Q 011277 427 VHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFC 459 (489)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 459 (489)
...+++.++|.+.+.+.+..|+...+.+.+.++
T Consensus 410 ~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 410 VGALGGALAPILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred hhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 999999999999888888888776665544433
No 29
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.8e-30 Score=238.60 Aligned_cols=379 Identities=16% Similarity=0.155 Sum_probs=252.3
Q ss_pred eeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHH
Q 011277 68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG 147 (489)
Q Consensus 68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~ 147 (489)
..++.+.|.+.+|.++| ..|.|++.+.+.+.|+++.++.|.++||.+.|..+..++++.++.+++.+++++...+.+.
T Consensus 46 knF~~a~p~l~e~~~ls--k~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l 123 (448)
T COG2271 46 KNFNLAMPALIEDGGLS--KTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVL 123 (448)
T ss_pred HhHhhccHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34677889999998876 4567999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhh--cccccCCchhHHHHHHHHHHHHHHHHH-
Q 011277 148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG--IPVKEIAGWWRICFWVSIVPAAILCLA- 224 (489)
Q Consensus 148 R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~--~~l~~~~~~wr~~f~~~~i~~~~~~~~- 224 (489)
-+++|+..|...|.+...++.|+|++|||+..++.+.+.++|..+.+++. ..+..+. +||..|++.++.++++.++
T Consensus 124 ~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~-~w~~~f~~pgiiaiival~~ 202 (448)
T COG2271 124 WVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG-GWRAAFYFPGIIAIIVALIL 202 (448)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999966655555 4444443 4899999876666655444
Q ss_pred hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCC-C-CcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277 225 MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD-D-GDIVKFEELLYGRHFRVVFIGSTLFALQQL 302 (489)
Q Consensus 225 ~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (489)
.+..+++|+-. +-++ .++..++.. +...+.++.+ . ..+.-.+.+++++..+.+.++.+.....-+
T Consensus 203 ~~~~rd~Pqs~---GLP~-----ie~~~~d~~-----e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~ 269 (448)
T COG2271 203 LFLLRDRPQSE---GLPP-----IEEYRGDPL-----EIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRY 269 (448)
T ss_pred HHHhCCCcccc---CCCC-----HHHhhcCch-----hhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 45566666421 1110 111111100 0000111111 1 112233445666666665554444333222
Q ss_pred hhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhc--CCchhHHHhhHHHHHHHHHHHHHhhccCCCch
Q 011277 303 SGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFFSMAVSMAIQVAASSSYIPGSA 380 (489)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 380 (489)
......+.|..+..+.+..+++.....+=++.++|++++|+++||+ |||......+.+....++...... +..
T Consensus 270 gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~----~~~- 344 (448)
T COG2271 270 GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA----PNG- 344 (448)
T ss_pred HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC----CCc-
Confidence 2222333333333233333355666777789999999999999996 677665444333333222222111 111
Q ss_pred hhHHHHHHHHHHHHHH-hcCccccccccccccCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchhhHHHHHH
Q 011277 381 SLYLSVGGMLMFVLTF-ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVGLLFLRLLEQLGPQLLYSIFGTF 458 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 458 (489)
..++.. .+++.+++ ..|.--+......|..|++..|++.|+...++++ |+..+....+.+.|..||...|.++.+.
T Consensus 345 ~~~l~~--~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~ 422 (448)
T COG2271 345 SYLLDA--ILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIA 422 (448)
T ss_pred cHHHHH--HHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHH
Confidence 111111 12222222 2222223445678999999999999999999999 7777777777776778998888888777
Q ss_pred HHHHHHHHHhh
Q 011277 459 CLMAVAFVKRN 469 (489)
Q Consensus 459 ~~~~~~~~~~~ 469 (489)
++++.+++...
T Consensus 423 a~l~~lll~~~ 433 (448)
T COG2271 423 ALLAILLLLPV 433 (448)
T ss_pred HHHHHHHHHHH
Confidence 76666554433
No 30
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.97 E-value=1.6e-28 Score=246.84 Aligned_cols=382 Identities=13% Similarity=0.123 Sum_probs=232.4
Q ss_pred eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc----chHHHHH
Q 011277 70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT----RNLIGML 145 (489)
Q Consensus 70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~----~~~~~l~ 145 (489)
+...+|.+.++ |++. .+.++..+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++ .+++.++
T Consensus 48 ~~~~~p~l~~~-g~s~--~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 124 (452)
T PRK11273 48 FALAMPYLVEQ-GFSR--GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 124 (452)
T ss_pred HHHhhHHHHHc-CCCH--HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHH
Confidence 45567777777 7764 456899999999999999999999999999999999999999999888775 3788889
Q ss_pred HHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHH-HHHHHhhcccccCCchhHHHHHHHHHHHHH-HHH
Q 011277 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVKEIAGWWRICFWVSIVPAAI-LCL 223 (489)
Q Consensus 146 ~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~-~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~-~~~ 223 (489)
+.|++.|++.|...+.....+.|++|+++|++++++++.+..+|. +.+++.+.......+ ||+.|++.++..++ ..+
T Consensus 125 ~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g-w~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 125 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND-WHAALYMPAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHH
Confidence 999999999998887777788999999999999999988888874 556654332222234 79999886554444 344
Q ss_pred HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhH-HHhhhccchhHHHHHHHHHHHHhh
Q 011277 224 AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKF-EELLYGRHFRVVFIGSTLFALQQL 302 (489)
Q Consensus 224 ~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 302 (489)
..+++||+|+....+ +.++.+++. .+ +.+..++.+......+ ...++++.++.......+.....
T Consensus 204 ~~~~~~~~~~~~~~~-~~~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 269 (452)
T PRK11273 204 AFAMMRDTPQSCGLP-PIEEYKNDY---PD---------DYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR- 269 (452)
T ss_pred HHHHccCCHhhcCCC-Chhhhhhcc---cc---------ccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHH-
Confidence 556678887532111 111100000 00 0000000000000111 12344454444433332222211
Q ss_pred hhHHHHHHhHHHHHHh-cCCC---cchHHHHHHHHHHHHHHHHHHHhhhc--CCchhHHHh-hHHHHHHHHHHHHHhhcc
Q 011277 303 SGINAIFYFSSSVFKS-AGLS---SGLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWS-FFSMAVSMAIQVAASSSY 375 (489)
Q Consensus 303 ~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~-~~~~~i~~~~~~~~~~~~ 375 (489)
+....+.|..+++ .+++ .+.......++.+++.+++|+++||+ +||...... .....++........
T Consensus 270 ---~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~--- 343 (452)
T PRK11273 270 ---YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNP--- 343 (452)
T ss_pred ---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhc---
Confidence 2222344444443 3443 34455566788888999999999999 445432221 111122211111110
Q ss_pred CCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCchhhHH
Q 011277 376 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFF-VGLLFLRLLEQLGPQLLYSI 454 (489)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~g~~~~~~~ 454 (489)
.... ......++..... ..+..+....+..|.+|++.|+++.|+.+...++++.+ +|.+.+.+.|..|+...|.+
T Consensus 344 -~~~~--~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~ 419 (452)
T PRK11273 344 -AGNP--TVDMACMIVIGFL-IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 419 (452)
T ss_pred -ccCh--HHHHHHHHHHHHH-HHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHH
Confidence 1111 1111111111111 11111223345679999999999999999999888765 68888888999998888888
Q ss_pred HHHHHHHHHHHHH-hhcccCCCCCHHHH
Q 011277 455 FGTFCLMAVAFVK-RNVVETKGKSLQEI 481 (489)
Q Consensus 455 ~~~~~~~~~~~~~-~~~~et~~~~~~e~ 481 (489)
++++++++.+... ...+|+| ..||.
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~--~~~~~ 445 (452)
T PRK11273 420 MIGGSILAVILLIVVMIGEKR--HHEEL 445 (452)
T ss_pred HHHHHHHHHHHHHHHhccccc--hHHHH
Confidence 8877776665443 3344444 34454
No 31
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.97 E-value=3.2e-28 Score=241.24 Aligned_cols=372 Identities=18% Similarity=0.201 Sum_probs=244.6
Q ss_pred HHHHHHHHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277 53 VLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG 131 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~ 131 (489)
...+++..++...+.++..+.+|. +.+++|.+. .+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~--~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (399)
T PRK05122 17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSA--FLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS 94 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence 455666677777777788888886 567888764 45689999999999999999999999999999999999988887
Q ss_pred HHHHhhc--------chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC
Q 011277 132 ASISATT--------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI 203 (489)
Q Consensus 132 ~~l~~~~--------~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~ 203 (489)
++.++.+ .++..+++.|+++|++.+...+....++.|++|+++|+++.++++.+..+|..+++.++..+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 174 (399)
T PRK05122 95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW 174 (399)
T ss_pred HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence 7765543 25667899999999999998888888899999999999999999999999988888888777666
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhh
Q 011277 204 AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLY 283 (489)
Q Consensus 204 ~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (489)
.+ ||+.+++..+..++..+.....||++. .+ ++ + .+.++.++
T Consensus 175 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~-~------------------------------~~~~~~~~ 216 (399)
T PRK05122 175 GG-LAGLGLLIMLLALLGLLLARPRPAVPP-----VK-GE-R------------------------------LPFRRVLG 216 (399)
T ss_pred cc-HHHHHHHHHHHHHHHHHHHhcCCCCCC-----CC-cc-c------------------------------hhHHHHHH
Confidence 67 688887654443333222222233210 00 00 0 00011111
Q ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHH
Q 011277 284 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA 362 (489)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~ 362 (489)
+ .+.......+..+. ......+.+..+.+.+. ..+.......++..++.++.+++.||+++|+.+..+.....
T Consensus 217 -~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~ 290 (399)
T PRK05122 217 -R-VWPYGMGLALASIG----FGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEI 290 (399)
T ss_pred -H-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 0 00000000111111 11111122222233332 23455556677888899999999999999998777666555
Q ss_pred HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 363 VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL 442 (489)
Q Consensus 363 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l 442 (489)
++........ + . +..+...++.+++++. ..|.......|..|++.|+++.++.+...+++..+++.+.+.+
T Consensus 291 ~~~~~~~~~~-----~-~--~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l 361 (399)
T PRK05122 291 LGLLLLWLAP-----S-P--WMALIGAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLV 361 (399)
T ss_pred HHHHHHHHhc-----c-H--HHHHHHHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544332211 1 1 1111222223333221 2233334566888999999999999999999988888888888
Q ss_pred HHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 011277 443 LEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480 (489)
Q Consensus 443 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e 480 (489)
.+..|+...+.+.+.+++++.+... ..++.++++.+|
T Consensus 362 ~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 398 (399)
T PRK05122 362 ASWFGYPSIFLAAALAALLGLALTW-LLYRRAPRAVPE 398 (399)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHH-HhcccccccCCC
Confidence 8888888888887777776665543 455555555444
No 32
>PRK10504 putative transporter; Provisional
Probab=99.97 E-value=2e-28 Score=248.04 Aligned_cols=383 Identities=16% Similarity=0.155 Sum_probs=250.6
Q ss_pred HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~ 132 (489)
...++++.++..++.+.+++.+|.+.+|+|.+.. +.++..+.+.++..++.+++|+++||+|||+++..+.++++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 89 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPL--HMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS 89 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 4556667788888888888999999999988644 45788899999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (489)
Q Consensus 133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~ 212 (489)
++++++++++.++++|+++|++.|...+....++.|++|+++|++..+++.....+|..+++.+++.+.+..+ ||+.|+
T Consensus 90 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f~ 168 (471)
T PRK10504 90 LFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIFL 168 (471)
T ss_pred HHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHHH
Confidence 9999999999999999999999999988889999999999999999999999999999999998887777667 699998
Q ss_pred HHHHHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHH---------HHhCCCc---hhHHHH-----------HHHhhc
Q 011277 213 VSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFE---------KLLGGSH---VKSSLA-----------ELSKLD 268 (489)
Q Consensus 213 ~~~i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~-----------~~~~~~ 268 (489)
+......+..+. ....|+++. .+.|.+....... ...+.+. ...... .....+
T Consensus 169 ~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (471)
T PRK10504 169 INIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHA 245 (471)
T ss_pred HHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 865444433333 333454321 1112221110000 0000000 000000 000001
Q ss_pred cCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhc
Q 011277 269 RGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL 348 (489)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~ 348 (489)
+.+..+..+. +++++++++......++............++|....++......++...+..++.+++.++.+++.||+
T Consensus 246 ~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~ 324 (471)
T PRK10504 246 RNNNRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF 324 (471)
T ss_pred hcCCCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1111112222 467777777665544443332222122233333322222222345566667777778888999999999
Q ss_pred CCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHH
Q 011277 349 GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVH 428 (489)
Q Consensus 349 grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 428 (489)
|||+++..+.....+...+..... ......... ....+.+.+.+.... .......+..|++.|+++.++.+...
T Consensus 325 g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 398 (471)
T PRK10504 325 GYRRVLVATTLGLALVSLLFMLVA----LLGWYYLLP-FVLFLQGMVNSTRFS-SMNTLTLKDLPDNLASSGNSLLSMIM 398 (471)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcc----ccccHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHcCCHHhccchHHHHHHHH
Confidence 999998877766665544433211 111111111 111222222222222 23346678889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q 011277 429 WVINFFVGLLFLRLLEQLGP 448 (489)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~g~ 448 (489)
.++..+++.+.+.+++..++
T Consensus 399 ~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 399 QLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999999888777765543
No 33
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.97 E-value=5.9e-29 Score=244.27 Aligned_cols=349 Identities=21% Similarity=0.189 Sum_probs=234.7
Q ss_pred eeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHH
Q 011277 69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR 148 (489)
Q Consensus 69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R 148 (489)
..++..|.+.+|+|.+. .+.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|
T Consensus 21 ~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (377)
T TIGR00890 21 TWTLLAPPLGRYFGVGV--TAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY 98 (377)
T ss_pred hhhhHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999998864 4568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHH-HHHhhcccccCCchhHHHHHHHHHHHHHHHHHh-h
Q 011277 149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMG-SLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM-V 226 (489)
Q Consensus 149 ~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~-g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~-~ 226 (489)
+++|++.|..++....++.|++| ++|+++.++...+..+|..+ +++.+. +.+..+ ||+.|++..+..++..+.. +
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~-~~~~f~~~~~~~~~~~~~~~~ 175 (377)
T TIGR00890 99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITS-VINLEG-VPAAFIYMGIIFLLVIVLGAF 175 (377)
T ss_pred HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHH-HHhccc-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887777777888887 57999999999998888654 444443 333345 7999988666555544433 3
Q ss_pred hccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHH
Q 011277 227 FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGIN 306 (489)
Q Consensus 227 ~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (489)
+.+|.|+. +.++++ .. ..+....++.++++.++............. .
T Consensus 176 ~~~~~~~~---~~~~~~------------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~- 222 (377)
T TIGR00890 176 LIGYPPGQ---LIKTNI------------EV--------------SVKDYTVWEMLRTPQFWVLYLSFFLNAVSG---L- 222 (377)
T ss_pred heecCchh---ccccCc------------cc--------------chhhhhHHHHHcCccHHHHHHHHHHHhHHH---H-
Confidence 44443320 000000 00 000012234445555544333222221111 1
Q ss_pred HHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhH
Q 011277 307 AIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLY 383 (489)
Q Consensus 307 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 383 (489)
....+.+...++.+.+. +.......++..++.++.+++.||+|||+.+..+.....++........ ... ..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~ 296 (377)
T TIGR00890 223 LLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP-----MLN-DV 296 (377)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc-----cch-hH
Confidence 11111222233344432 3455667788889999999999999999988777666665554433221 111 11
Q ss_pred HHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Q 011277 384 LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA 462 (489)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 462 (489)
.......+.....+ +..+....+..|.+|+++|++..|+.+....+++.++|.+.+.+.+..|+...|.+.+++++++
T Consensus 297 ~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 297 LFLATVALVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 11111122222222 1223444578899999999999999999999999999999888888888888887777666654
No 34
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.97 E-value=5.9e-29 Score=247.78 Aligned_cols=377 Identities=17% Similarity=0.103 Sum_probs=256.6
Q ss_pred hhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh----
Q 011277 62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT---- 137 (489)
Q Consensus 62 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~---- 137 (489)
+...........+|.+.++++.+ +.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++..+.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~s--~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~ 105 (417)
T PRK10489 28 ISIFGLGLLGVAVPVQIQMMTGS--TLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc
Confidence 33344455667788888887754 556799999999999999999999999999999999888877776655432
Q ss_pred -cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277 138 -TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV 216 (489)
Q Consensus 138 -~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i 216 (489)
.++++.+++.|+++|++.+...+....++.|+.|+++|+++.++......+|..+|+.++..+.+..+ ||+.|++..+
T Consensus 106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~~~~ 184 (417)
T PRK10489 106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGLAAA 184 (417)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 56788899999999999888777778889999999999999999999999999999998877665555 6888887666
Q ss_pred HHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHH
Q 011277 217 PAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296 (489)
Q Consensus 217 ~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (489)
..++..+....+||+++. +.+.++.. ++. ...++..++++.++.......+
T Consensus 185 ~~~~~~~~~~~l~~~~~~---~~~~~~~~----------------~~~----------~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T PRK10489 185 GTFITLLPLLRLPALPPP---PQPREHPL----------------RSL----------LAGFRFLLASPVVGGIALLGGL 235 (417)
T ss_pred HHHHHHHHHHhCCCCCCC---Ccccccch----------------HHH----------HHHHHHHHcChHHHHHHHHHHH
Confidence 555555555666775421 00000000 000 0012223334444333322222
Q ss_pred HHHHhhhhHHHHHHhHHHHHHh-cCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHh
Q 011277 297 FALQQLSGINAIFYFSSSVFKS-AGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS 372 (489)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~ 372 (489)
... . .....+.+...++ .+.+ .+......+++.+++.++.+++.||.++++.+..+.....++.++....
T Consensus 236 ~~~--~---~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~- 309 (417)
T PRK10489 236 LTM--A---SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM- 309 (417)
T ss_pred HHH--H---HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-
Confidence 111 1 1112222333333 3443 3455666778889999999999999777777666655554443332211
Q ss_pred hccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh
Q 011277 373 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLY 452 (489)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 452 (489)
+ . .+......++++.+.+. ..+....+..|..|++.|+++.|+.+...+++..+++.+.+.+.+..|....+
T Consensus 310 ----~-~--~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~ 381 (417)
T PRK10489 310 ----P-M--WILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASA 381 (417)
T ss_pred ----c-h--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHH
Confidence 1 1 11111222222222211 12344567889999999999999999999999999999999999988887777
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCHHHHHHh
Q 011277 453 SIFGTFCLMAVAFVKRNVVETKGKSLQEIEIA 484 (489)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~et~~~~~~e~~~~ 484 (489)
.+.+.+.++..+.....+||+|+++++|+|+-
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 382 SASGFGLLIIGVLLLLVLGELRRFRQTPPEVD 413 (417)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 77777777766666778899999999999854
No 35
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.97 E-value=8.1e-29 Score=252.02 Aligned_cols=377 Identities=19% Similarity=0.205 Sum_probs=251.9
Q ss_pred HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~ 132 (489)
...++++.++..++.++.++.+|.+.+|+|.+.+ +.++..+.+.++..++.++.|+++||+|||+++..+.+++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLS--QVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS 81 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh--hhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 4556777888889999999999999999998754 45799999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (489)
Q Consensus 133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~ 212 (489)
++++.++|++.++++|+++|++.+...+....++.|++|+++|+++.+++.....+|..+++.++..+.+..+ ||+.|+
T Consensus 82 ~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~ 160 (485)
T TIGR00711 82 LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIFL 160 (485)
T ss_pred HHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999888877777 699998
Q ss_pred HHHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHH----------HHHhCC-Cch--h-HHHH----------HHHhh
Q 011277 213 VSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEF----------EKLLGG-SHV--K-SSLA----------ELSKL 267 (489)
Q Consensus 213 ~~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~----------~~~~~~-~~~--~-~~~~----------~~~~~ 267 (489)
+..+..++..+ ..++.||+++- .+++.+.....+ ....+. +.. . .... .....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (485)
T TIGR00711 161 INVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVW 238 (485)
T ss_pred hhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 86555544433 34456665321 111111110000 000000 000 0 0000 00000
Q ss_pred ccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHH-hcCCC---cchHHHHHHHHHHHHHHHHHH
Q 011277 268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLS---SGLANVFVGIANLLGSVVAMV 343 (489)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~i~~~~g~~~~g~ 343 (489)
+..++++ ....+.++++.+.......++.....+.. .++.+..++ ..+.+ .+....+..++.+++.++.|+
T Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~ 313 (485)
T TIGR00711 239 ELTDDNP-LVDLRLFKYRNFTIGCVYMSLLGLGLYGS----FYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGR 313 (485)
T ss_pred HHcCCCC-ccCHHHHcCCChHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111 11134566666655544433333322222 223333332 23433 456677778889999999999
Q ss_pred HhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHH
Q 011277 344 LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV 423 (489)
Q Consensus 344 l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 423 (489)
+.||+|||+.+..+.....++........ .+... .+......++.+++.+....+.. ....|..|++.|+++.|+
T Consensus 314 l~~r~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~ 388 (485)
T TIGR00711 314 MGDKIDPRKLVTIGLILYAVGFYWRAFTF---TPDTP-FLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSL 388 (485)
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHhccC---CCCCC-HHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHH
Confidence 99999999988777666665554433111 11111 11111122233333322222333 245577899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011277 424 CMSVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l~~ 444 (489)
.+...++++.+++.+...+.+
T Consensus 389 ~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 389 SNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888777665
No 36
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.96 E-value=1.5e-27 Score=234.81 Aligned_cols=361 Identities=14% Similarity=0.142 Sum_probs=238.2
Q ss_pred HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~ 133 (489)
...+...+..+......++.+|.+.+|+|.+.+ +.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~--~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 83 (382)
T PRK10091 6 LSLALGTFGLGMAEFGIMGVLTELAHDVGISIP--AAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA 83 (382)
T ss_pred HHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHH--HHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 445566677777777788889999999998754 468999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (489)
Q Consensus 134 l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~ 213 (489)
++++++|++.+++.|+++|++.|...+....++.|++|+++|++..+.+..+..+|..+++.++..+.+..+ ||+.|++
T Consensus 84 l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f~~ 162 (382)
T PRK10091 84 MFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTFLL 162 (382)
T ss_pred HHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHHHH
Confidence 999999999999999999999998888888889999999999999999999999998888888777766666 7999998
Q ss_pred HHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011277 214 SIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (489)
Q Consensus 214 ~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (489)
.++..++..+ ...+.||.++ +.+ .+.+ + ..+.++++..+....
T Consensus 163 ~~~~~~~~~~~~~~~lp~~~~----~~~-~~~~-------------~------------------~~~~~~~~~~~~~~~ 206 (382)
T PRK10091 163 IAVFNIAVLASIYFWVPDIRD----EAK-GGLR-------------E------------------QFHFLRSPAPWLIFA 206 (382)
T ss_pred HHHHHHHHHHHHHHhCCCCCc----ccc-cCHH-------------H------------------HHHHhcChHHHHHHH
Confidence 6554444333 3445677531 000 0000 0 001122222222211
Q ss_pred HHHHHHHHhhhhHHHHHHh-HHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHH
Q 011277 293 GSTLFALQQLSGINAIFYF-SSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368 (489)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~ 368 (489)
...+ .. .+......+ .+...+..+.+. +.......++..++.++.+++.||+|+|+.+..+.....++.++.
T Consensus 207 ~~~~---~~-~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~ 282 (382)
T PRK10091 207 ATMF---GN-AGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLML 282 (382)
T ss_pred HHHH---HH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHH
Confidence 1111 11 111111122 222223345443 455566778889999999999999999998877766655554433
Q ss_pred HHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hC
Q 011277 369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LG 447 (489)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g 447 (489)
..... . .... ....++...++.....|.......+..|.+.++.+ ..+...+++..++|.+.+.+.+. .+
T Consensus 283 ~~~~~----~-~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~ 353 (382)
T PRK10091 283 FFFGG----M-KTAS--LIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLA 353 (382)
T ss_pred HHHHh----h-HHHH--HHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccC
Confidence 22111 1 1111 11111222221111122222334455555555554 34566788999999988888885 56
Q ss_pred CchhhHHHHHHHHHHHHHH
Q 011277 448 PQLLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~ 466 (489)
+...+.+.++++++.....
T Consensus 354 ~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 354 YNYVALPAALLSFAAMSSL 372 (382)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 7777777666655554433
No 37
>TIGR00895 2A0115 benzoate transport.
Probab=99.96 E-value=1.7e-27 Score=235.79 Aligned_cols=375 Identities=19% Similarity=0.251 Sum_probs=242.4
Q ss_pred HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG 131 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~ 131 (489)
......+..+..+++....+...|.+.+++|.+. .+.+++.+.+.++..++.++.|+++||+|||+.+..+.++..++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 95 (398)
T TIGR00895 18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDP--VQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVF 95 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCH--HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444555566677777777778899999988764 35688999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011277 132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF 211 (489)
Q Consensus 132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f 211 (489)
.++.+.+++++.+++.|++.|++.+...+....++.|++|+++|++..++...+..+|..+++.++..+.+..+ ||+.|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~ 174 (398)
T TIGR00895 96 TLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSLF 174 (398)
T ss_pred HHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-ceeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999888877766666 68888
Q ss_pred HHHH-HHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011277 212 WVSI-VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV 290 (489)
Q Consensus 212 ~~~~-i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (489)
++.+ +..+...+...++||++++...+ +.++..+..++.......+. .++..+.++.++..+...+..++++..+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (398)
T TIGR00895 175 YVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEA-QSALPEQKATQGTKRSVFKALFQGKTARIT 252 (398)
T ss_pred hhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccc-cccccccccccchhhHHHHHHhcchhHHHH
Confidence 7763 44444455566789998765544 33332222222211100000 000000000000011112222322222222
Q ss_pred HHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHH
Q 011277 291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367 (489)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~ 367 (489)
........+... .......+.+...+..+.+ .+.......++..++.++.++++||++||+... ......+...+
T Consensus 253 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~ 330 (398)
T TIGR00895 253 VLLWLLYFMLLV-GVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVL 330 (398)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHH
Confidence 221112211111 1222233444444555544 345566677888999999999999999984433 33333332222
Q ss_pred HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011277 368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR 441 (489)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 441 (489)
..... .. .. ......++.+++.+. ..+....+..|.+|++.|+++.|+.+.+.+++..++|.+.+.
T Consensus 331 ~~~~~----~~-~~--~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 331 VGSTL----FS-PT--LLLLLGAIAGFFVNG-GQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHh----hC-HH--HHHHHHHHHHHHHHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 22111 11 11 111112222222221 234556789999999999999999999999999988877654
No 38
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.96 E-value=2.9e-27 Score=234.81 Aligned_cols=357 Identities=17% Similarity=0.135 Sum_probs=235.8
Q ss_pred HHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHH
Q 011277 50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI 129 (489)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~ 129 (489)
+...+.+.+..+...++.+.+.+.+|.+.+|+|.+.+ +.++..+.+.+++.+++++.|+++||+|||+++..+.++..
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 89 (406)
T PRK15402 12 LLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAE--WVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFI 89 (406)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3345556666777777788888889999999998644 45788899999999999999999999999999999999999
Q ss_pred HHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHH
Q 011277 130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI 209 (489)
Q Consensus 130 i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~ 209 (489)
++..+.+.+++++.+++.|+++|++.+...+....++.|.+|+++|++..++......+|..+++.++..+.+..+ ||+
T Consensus 90 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-w~~ 168 (406)
T PRK15402 90 LTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-WRG 168 (406)
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-ccH
Confidence 9999999999999999999999999988878888899999999999999888887777888888888776666566 699
Q ss_pred HHHHHHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchh
Q 011277 210 CFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288 (489)
Q Consensus 210 ~f~~~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (489)
.|++..+..++..+ .....||+++.. ++..+ .++. ...+++.+++++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------~~~~--------------~~~~~~~~~~~~~~ 218 (406)
T PRK15402 169 MFVLFAALAALSFFGLWRAMPETAGRV---GEKLS-------------LKEL--------------GRDYKLVLKNRRFV 218 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCccc---ccccc-------------HHHH--------------HHHHHHHHcCcHHH
Confidence 98876555444433 334567764310 00000 0000 01123445555554
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHH
Q 011277 289 VVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVS 364 (489)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~ 364 (489)
.......+....... ...+.+..+ +..+.+ .+.......++..++.++.+++.||+++|+.+..+.....++
T Consensus 219 ~~~~~~~~~~~~~~~----~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g 294 (406)
T PRK15402 219 AGALALGLVSLPLLA----WIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAG 294 (406)
T ss_pred HHHHHHHHHHHHHHH----HHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 443332222211111 111122222 223443 234445566778889999999999999999887776666555
Q ss_pred HHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 365 MAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (489)
..+....... ... ...+ ......++..+.+... +......... +++.|++..++.+....++..+++.+...+.+
T Consensus 295 ~~~~~~~~~~-~~~-~~~~-~~~~~~~~g~g~~~~~-~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 295 LLLAALATVI-SSH-AYLW-LTAGLSLYAFGIGLAN-AGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred HHHHHHHHHc-ccc-cHHH-HHHHHHHHHHHHHHHh-hhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5544332211 111 1111 1222233333332222 2222222222 44889999999999999998888888777766
Q ss_pred HhCC
Q 011277 445 QLGP 448 (489)
Q Consensus 445 ~~g~ 448 (489)
..+.
T Consensus 370 ~~~~ 373 (406)
T PRK15402 370 GGGN 373 (406)
T ss_pred CCch
Confidence 5554
No 39
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.96 E-value=5e-28 Score=242.38 Aligned_cols=388 Identities=13% Similarity=0.085 Sum_probs=238.6
Q ss_pred hhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc---
Q 011277 62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--- 138 (489)
Q Consensus 62 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~--- 138 (489)
....+...+....|.+. ++|.+. .+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+..
T Consensus 38 ~~~~~~~~~~~~~p~~~-~~g~s~--~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (438)
T TIGR00712 38 AYYLVRKNFALAMPYLV-EQGFSK--GELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA 114 (438)
T ss_pred HHHHHhccHHhhhHHHH-HcCCCH--hHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc
Confidence 33333333445566665 457654 456899999999999999999999999999999999999999988887664
Q ss_pred -chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhc-ccccCCchhHHHHHHHHH
Q 011277 139 -RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI-PVKEIAGWWRICFWVSIV 216 (489)
Q Consensus 139 -~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~-~l~~~~~~wr~~f~~~~i 216 (489)
.++..+.+.|++.|++.|...+....++.|++|+++||+++++++.+..+|..+++.+.. ......+ ||+.|++.++
T Consensus 115 ~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~-w~~~f~~~~~ 193 (438)
T TIGR00712 115 TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND-WHAALYFPAI 193 (438)
T ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh-hHHHHHHHHH
Confidence 467778899999999999888888888999999999999999999988888766655433 3333334 7999988655
Q ss_pred HHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchh-HHHhhhccchhHHHHHH
Q 011277 217 PAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVK-FEELLYGRHFRVVFIGS 294 (489)
Q Consensus 217 ~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 294 (489)
..++. .+..+++||+|+....+ +.++ . + ++.. ++ . .+..+.+...... .+..++++.++......
T Consensus 194 ~~~i~~~~~~~~~~~~~~~~~~~-~~~~-~---~---~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (438)
T TIGR00712 194 CAIIVALFAFAMMRDTPQSCGLP-PIEE-Y---R---NDYP-DD-Y---NEKAEQELTAKEIFMQYVLPNKLLWYIAIAN 260 (438)
T ss_pred HHHHHHHHHHHhccCCHHhcCCC-Cchh-c---c---cccc-cc-c---ccccccccchHHHHHHHHccCchHHHHHHHH
Confidence 55543 34456678887532100 0000 0 0 0000 00 0 0000000000001 12244555554443332
Q ss_pred HHHHHHhhhhHHHHHHhHHHHHHh-cCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHH
Q 011277 295 TLFALQQLSGINAIFYFSSSVFKS-AGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA 370 (489)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~ 370 (489)
.+.... .+....+.+..+++ .+.+ .++......+...++.+++++++||+++++....+.....+.......
T Consensus 261 ~~~~~~----~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~ 336 (438)
T TIGR00712 261 VFVYLL----RYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIV 336 (438)
T ss_pred HHHHHH----HHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHH
Confidence 222211 12233344444443 3443 355667777888999999999999996543222232222211111111
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHHh-cCccccccccccccCCchhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhCC
Q 011277 371 ASSSYIPGSASLYLSVGGMLMFVLTFA-LGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVIN-FFVGLLFLRLLEQLGP 448 (489)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~g~ 448 (489)
.... +. ...+.....+ +..++. .+..+.......|.+|++.|+++.|+.+.++++++ .++|.+.+.+.+..|+
T Consensus 337 ~~~~--~~-~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~ 411 (438)
T TIGR00712 337 YWMN--PA-GNPLVDMICM--IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 411 (438)
T ss_pred HHhc--CC-CchHHHHHHH--HHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccc
Confidence 1110 00 1111111111 112221 12112223356799999999999999999988875 5788888888888888
Q ss_pred chhhHHHHHHHHHHHHHHHhhcccCCC
Q 011277 449 QLLYSIFGTFCLMAVAFVKRNVVETKG 475 (489)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~et~~ 475 (489)
...+.+++++++++.+.....+||.|+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 412 DGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 888888888787777777788888764
No 40
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.96 E-value=3.5e-27 Score=233.97 Aligned_cols=368 Identities=16% Similarity=0.143 Sum_probs=229.5
Q ss_pred HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~ 132 (489)
...+.+..++...+..+..+++|++.++++.+.++ .++..+.+.+|+.++++++|+++||+|||+++..+.+++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 95 (413)
T PRK15403 18 PMALILYDFAAYLTTDLIQPGIINVVRDFNADVSL--APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLAC 95 (413)
T ss_pred HHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHH--HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHH
Confidence 34446666667778889999999999999986554 4688999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (489)
Q Consensus 133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~ 212 (489)
++++.++|++.++++|+++|++.+...+....++.|++|+++|++..+++.....+|..+|++++..+.+..+ ||+.|+
T Consensus 96 ~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~ 174 (413)
T PRK15403 96 AATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFA 174 (413)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHH
Confidence 9999999999999999999999887667777889999999999999999999999999999999877766656 799999
Q ss_pred HHHHHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011277 213 VSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF 291 (489)
Q Consensus 213 ~~~i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (489)
+..+..++..+. .+.+||+++. +++..+ .+.. ...+++.++++.++...
T Consensus 175 ~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~-------------~~~~--------------~~~~~~ll~~~~~~~~~ 224 (413)
T PRK15403 175 IIAVMGLIAFVGLLLAMPETVKR---GAVPFS-------------AKSV--------------LRDFRNVFRNRLFLTGA 224 (413)
T ss_pred HHHHHHHHHHHHHHHhCCCCccc---cCCCCC-------------hHHH--------------HHHHHHHHcCHHHHHHH
Confidence 876655554443 4557887430 100000 0000 01234455555555443
Q ss_pred HHHHHHHHHhhhhHHHHHHhHHHHHHh-cCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHH
Q 011277 292 IGSTLFALQQLSGINAIFYFSSSVFKS-AGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367 (489)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~ 367 (489)
....+.... ......+.|.++++ .+.+. ++...+...+.++++.+.+++.+|..+++..........++..+
T Consensus 225 l~~~~~~~~----~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l 300 (413)
T PRK15403 225 ATLSLSYIP----MMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLAL 300 (413)
T ss_pred HHHHHHHHH----HHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 332222111 11222233433333 34443 34455566777777777777665444434332222222222222
Q ss_pred HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277 368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 447 (489)
....... .+.. .......+.++..+.+....+... ..-+. ....++++.++.+.+...+...++.....+... +
T Consensus 301 ~~~~~~~-~~~~--~~~~~~~~~l~~~G~~~~~p~~~~-~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~ 374 (413)
T PRK15403 301 LIVGNLL-WPHV--WLWSVLGTSLYAFGIGLIFPTLFR-FTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-G 374 (413)
T ss_pred HHHHHHH-cccc--HHHHHHHHHHHHHHHHHHhHHHHH-HHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 2211100 1111 111122233333333222212211 11111 122378888888888877777777665554433 5
Q ss_pred CchhhHHHHHHHHHHH
Q 011277 448 PQLLYSIFGTFCLMAV 463 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~ 463 (489)
....+...+.++.+..
T Consensus 375 ~~~~~~~~~~~~~~~~ 390 (413)
T PRK15403 375 GRLPFHLLAVVAGVIV 390 (413)
T ss_pred CchHHHHHHHHHHHHH
Confidence 5566665555544443
No 41
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.96 E-value=1.1e-26 Score=228.53 Aligned_cols=361 Identities=18% Similarity=0.186 Sum_probs=245.9
Q ss_pred HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG 131 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~ 131 (489)
.+..+.++.++.+.+.+..++.+|.+.+++|.+ +.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s--~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~ 84 (381)
T PRK03633 7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLP--TWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG 84 (381)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667788888899999999999999999885 446799999999999999999999999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011277 132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF 211 (489)
Q Consensus 132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f 211 (489)
..+++.++|++.+++.|+++|++.+...+.....+.|..++++|+++.+.+..+..+|..+|+.++..+.+... |+..+
T Consensus 85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~ 163 (381)
T PRK03633 85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLPW 163 (381)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHHH
Confidence 99999999999999999999999998877777777889999999999999999999999999999887765422 22222
Q ss_pred HHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011277 212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF 291 (489)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (489)
........+..+.....+|++ .+ ++ +..+..+.++++.++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~------~~----------------------------~~---~~~~~~~~~~~~~~~~~~ 206 (381)
T PRK03633 164 VTGLVLAAILPLLFTRILNQQ------AE----------------------------NH---DSTSIWPMLKLRQARLGV 206 (381)
T ss_pred HHHHHHHHHHHHHHhcccCCC------CC----------------------------CC---CCCCHHHHHHhcchHHHH
Confidence 211111111111111111110 00 00 001223344445544332
Q ss_pred HHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHH
Q 011277 292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368 (489)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~ 368 (489)
......... ......+.+...++.+.+. +.......++.+++.+..+++.||+++|+.+..+.....++....
T Consensus 207 ~~~~~~~~~----~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 282 (381)
T PRK03633 207 NGCIISGIV----LGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM 282 (381)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 221111111 1111223344444445543 344455667888999999999999999998877666555544332
Q ss_pred HHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011277 369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP 448 (489)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 448 (489)
. . . .... ....+++... .+..|....+..|..|++.++...+..+...++++.++|.+.+.+.++.++
T Consensus 283 ~--~-~-----~~~~---~~~~l~g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~ 350 (381)
T PRK03633 283 L--S-Q-----AAMA---PALFILGAAG-FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSD 350 (381)
T ss_pred h--h-h-----HHHH---HHHHHHHHHH-HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 2 1 0 0111 1111222211 123455556778988888888788887777888999999999989898898
Q ss_pred chhhHHHHHHHHHHHHHHHh
Q 011277 449 QLLYSIFGTFCLMAVAFVKR 468 (489)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~ 468 (489)
.+.|.+.+.+.++..+..++
T Consensus 351 ~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 351 NLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHh
Confidence 88888888777766655543
No 42
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.96 E-value=1.5e-26 Score=227.99 Aligned_cols=360 Identities=18% Similarity=0.154 Sum_probs=233.2
Q ss_pred HHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH
Q 011277 55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI 134 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l 134 (489)
.+..+.+..........+.+|.+.+|+|++.+ +.++..+.+.++..+++++.|+++||+|||+++..+.++++++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~ 101 (394)
T PRK10213 24 SVAFCVACLIIVEFLPVSLLTPMAQDLGISEG--VAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLL 101 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHH
Confidence 33333333333332334457889999998754 4578889999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHH
Q 011277 135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214 (489)
Q Consensus 135 ~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~ 214 (489)
++.++|++.+++.|+++|++.|...+....++.|++|+++|+++.++...+..+|..+++.++..+.+..+ ||+.|++.
T Consensus 102 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~~~ 180 (394)
T PRK10213 102 VSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WRNVFNAA 180 (394)
T ss_pred HHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988877767 69999886
Q ss_pred HHHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHH
Q 011277 215 IVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG 293 (489)
Q Consensus 215 ~i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (489)
.+..++..+. ....||+|+. + ++ ...+..+.++++.++.....
T Consensus 181 ~~l~~~~~l~~~~~~p~~~~~-----~-~~------------------------------~~~~~~~~l~~~~~~~~~~~ 224 (394)
T PRK10213 181 AVMGVLCIFWIIKSLPSLPGE-----P-SH------------------------------QKQNTFRLLQRPGVMAGMIA 224 (394)
T ss_pred HHHHHHHHHHHHHHCCCCCcc-----c-cc------------------------------chhHHHHHhcCHHHHHHHHH
Confidence 5544443332 2335665310 0 00 00011233444444433322
Q ss_pred HHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHH
Q 011277 294 STLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA 370 (489)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~ 370 (489)
..+.....+. ...+..+...++.+.+. +......+++..++.++.+++.||.+++ .+..+.....+....+..
T Consensus 225 ~~~~~~~~~~---~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~~ 300 (394)
T PRK10213 225 IFMSFAGQFA---FFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVLTL 300 (394)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHH
Confidence 2222211111 11122233344445543 4556667788899999999999996544 333333322222222211
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Q 011277 371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQL 450 (489)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 450 (489)
... . .+......+++++++... .+....+..+..| +.+++..+....+.+++..+++.+.+.+.+..|...
T Consensus 301 ~~~----~---~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~ 371 (394)
T PRK10213 301 WGS----D---KIVATGVAIIWGLTFALV-PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTS 371 (394)
T ss_pred Hhh----h---HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhh
Confidence 111 1 111122233333333322 2323334556667 445666677777788899999999999988888766
Q ss_pred hhHHHHHHHHHHHHHH
Q 011277 451 LYSIFGTFCLMAVAFV 466 (489)
Q Consensus 451 ~~~~~~~~~~~~~~~~ 466 (489)
.+...+.+.++..++.
T Consensus 372 ~~~~~~~~~~~~~~~~ 387 (394)
T PRK10213 372 PLMLSGTLMLLTALLV 387 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666555554444443
No 43
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.96 E-value=1.8e-27 Score=232.77 Aligned_cols=352 Identities=15% Similarity=0.112 Sum_probs=239.0
Q ss_pred HHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh
Q 011277 58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT 137 (489)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~ 137 (489)
.+.++.....+..++.+|.+..|++.+ +.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++..+.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGTGS--ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777888888887764 456789999999999999999999999999999999999999888888887
Q ss_pred cc-----hHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277 138 TR-----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (489)
Q Consensus 138 ~~-----~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~ 212 (489)
+. +++.+++.|+++|++.+...+....++.|++|+++|++..++.+.+..+|..+++.++..+.+..+ ||+.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~~~ 162 (365)
T TIGR00900 84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWAIW 162 (365)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHH
Confidence 77 999999999999999999999999999999999999999999999999999999999887766666 699998
Q ss_pred HHHHHHHHHHHHhhh--ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011277 213 VSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV 290 (489)
Q Consensus 213 ~~~i~~~~~~~~~~~--~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (489)
+..+..++..+..+. .||+++ +++.+..++. .++. ...+++.++++.++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-------------~~~~----------~~~~~~~~~~~~~~~~ 215 (365)
T TIGR00900 163 VDAVGFAISALLIVSVRIPELAA----SEIQALSNAV-------------LRDT----------REGIKFVLKNPLLRTL 215 (365)
T ss_pred HHHHHHHHHHHHHHhcccccCCC----ccccccchhH-------------HHHH----------HhHHHHHHcCcHHHHH
Confidence 765554444333332 233221 0000000000 0000 0113334455555544
Q ss_pred HHHHHHHHHHhhhhH-HHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHH
Q 011277 291 FIGSTLFALQQLSGI-NAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV 369 (489)
Q Consensus 291 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~ 369 (489)
.....+......... ...+++..+.++......+.......++.+++.++.+++.||++||+....+....+++.....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (365)
T TIGR00900 216 LLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVG 295 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence 433333222221111 2223333322222222345666677788899999999999999999987766555554444332
Q ss_pred HHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277 370 AASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 447 (489)
... . ..+......+..+++.+. ..+....+..|..|++.|+++.|+.+.+.+++..+++.+.+.+.+..|
T Consensus 296 ~~~-----~--~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 296 LTP-----P--NFPLFLVLWFAIGVGYGP-INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred hhc-----h--hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 211 1 112222222233333222 234556688999999999999999999999999999998888777543
No 44
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.96 E-value=1.9e-28 Score=240.83 Aligned_cols=365 Identities=16% Similarity=0.137 Sum_probs=231.0
Q ss_pred hccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHH
Q 011277 64 GYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG 143 (489)
Q Consensus 64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~ 143 (489)
.++....+...|.+.+++|.+.+ +.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++.+.+++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (379)
T TIGR00881 8 YLVRKNFALAMPYLVEEIGLSKT--DLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWV 85 (379)
T ss_pred HHhHHhhhhhhHHHHHHhCCCHh--HHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHH
Confidence 34455566778889999988754 5689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHH-HhhcccccCCchhHHHHHHHHHHHHH-H
Q 011277 144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL-LIGIPVKEIAGWWRICFWVSIVPAAI-L 221 (489)
Q Consensus 144 l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~-~~~~~l~~~~~~wr~~f~~~~i~~~~-~ 221 (489)
+++.|++.|++.+...+....++.|++|+++|++..++...+..+|..+++ +++..+.+..+ ||+.|++..+..++ .
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 164 (379)
T TIGR00881 86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGIIAIIVS 164 (379)
T ss_pred HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988888 45555555555 69998876544443 3
Q ss_pred HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHh
Q 011277 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQ 301 (489)
Q Consensus 222 ~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (489)
.+...+.+|+|+....+ .++.. . .++ .+. +.++.++.....+...++.++++.++.......+.....
T Consensus 165 ~~~~~~~~~~~~~~~~~--~~~~~-~-----~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (379)
T TIGR00881 165 LICFLLLRDSPQSCGLP--PAEEM-P-----NEE-PDG---DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVR 232 (379)
T ss_pred HHHheeeCCCccccccC--ccccC-c-----ccc-ccc---ccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 34445667765421100 00000 0 000 000 000000000111122344555555554443333222211
Q ss_pred hhhHHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCC
Q 011277 302 LSGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP 377 (489)
Q Consensus 302 ~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 377 (489)
. ....+.+..+ +..+.+ .+.......++.+++.++.+++.||..+|+..................... .+
T Consensus 233 ~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 306 (379)
T TIGR00881 233 T----GILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL--NP 306 (379)
T ss_pred H----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc--Cc
Confidence 1 1122222222 233443 345666777888999999999999864332221211111111111111110 01
Q ss_pred CchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 011277 378 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLL 451 (489)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 451 (489)
....... .......+. ...+..+....+..|.+|++.|+++.|+.+.+.++++.++|.+.+.+.+..|+...
T Consensus 307 ~~~~~~~-~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 307 AANPLMD-LICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred chhHHHH-HHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 1111111 111111111 12233334455788999999999999999999999999999999999888877544
No 45
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.96 E-value=4.8e-27 Score=237.07 Aligned_cols=366 Identities=16% Similarity=0.096 Sum_probs=214.5
Q ss_pred hhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcch
Q 011277 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN 140 (489)
Q Consensus 61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~ 140 (489)
+...++.....+.+|.+.+|+|++.+ +.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++.+++++
T Consensus 46 ~~~~~~~~~~~~~~~~l~~~~gls~~--~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s 123 (476)
T PLN00028 46 FTCFVSTFAAAPLLPIIRDNLNLTKS--DIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS 123 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333344456778899999998644 4578888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccc----cc-----CCchhHHHH
Q 011277 141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV----KE-----IAGWWRICF 211 (489)
Q Consensus 141 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l----~~-----~~~~wr~~f 211 (489)
+..+++.|+++|++.+... ....+++|++|+++||++.++......+|..+++.+...+ .+ ..+ ||+.|
T Consensus 124 ~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g-Wr~~f 201 (476)
T PLN00028 124 ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA-WRIAF 201 (476)
T ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh-hHHHH
Confidence 9999999999999987654 3456789999999999999998765555544443332111 11 124 79999
Q ss_pred HHHHHHHHHHHHHhhhccC-ChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011277 212 WVSIVPAAILCLAMVFCAE-SPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV 290 (489)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~E-sp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (489)
++.++..++..+..+++++ .|+ ++.++. ++. .+.++......+++.+++++.+..
T Consensus 202 ~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~----~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 257 (476)
T PLN00028 202 FVPGLLHIIMGILVLTLGQDLPD-----GNYREL----KKS---------------GTMPKDSFSKVLRYGVTNYRTWIL 257 (476)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCC-----CchhhH----Hhc---------------CccccccHHHHHHHHHcCchhHHH
Confidence 9876666555444444443 321 111110 000 000000001123344444554433
Q ss_pred HHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchh----HHHhhHHHH
Q 011277 291 FIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKAL----LQWSFFSMA 362 (489)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~----~~~~~~~~~ 362 (489)
........... .....+.+..+ +..+.+. +.......++..++.+++|+++||++||+. .........
T Consensus 258 ~~~~~~~~~~~----~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~ 333 (476)
T PLN00028 258 ALTYGYSFGVE----LTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQT 333 (476)
T ss_pred HHHHHHHHHHH----HHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 33221111111 11122233332 3345543 445566778889999999999999987521 111111111
Q ss_pred HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 363 VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL 442 (489)
Q Consensus 363 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l 442 (489)
+..+...... . ... ....+..++++........ +..+.+..|+.| +.|++..|+.+..+++++.+++.+.. .
T Consensus 334 l~~i~~~~~~--~-~~~--~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~ 405 (476)
T PLN00028 334 LGGVFCIWLG--R-ANS--LGAAIVVMILFSIFVQAAC-GATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-T 405 (476)
T ss_pred HHHHHHHHhc--c-cch--HHHHHHHHHHHHHHHHHhh-hhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-h
Confidence 1111111111 0 111 1111112222222222111 234445667755 79999999998888888888876543 1
Q ss_pred HHHhCCchhhHHHHHHHHHHHHHH
Q 011277 443 LEQLGPQLLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 443 ~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
.+..++...|.+.+++.+++.+..
T Consensus 406 ~~~~~y~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 406 GSSYSTETGISLMGVMIIACTLPV 429 (476)
T ss_pred cCCccHhhHHHHHHHHHHHHHHHH
Confidence 112345667777776666655443
No 46
>PRK12382 putative transporter; Provisional
Probab=99.96 E-value=2.1e-26 Score=227.61 Aligned_cols=356 Identities=17% Similarity=0.170 Sum_probs=232.2
Q ss_pred HHHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHH-
Q 011277 58 LSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS- 135 (489)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~- 135 (489)
.+.++.....+...+.+|. +.+|+|.+. .+.|+..+.+.+++.++++++|+++||+|||+++..+.+.+.++.+..
T Consensus 22 ~~~~~~~~~~~~~~p~l~~~l~~~lg~s~--~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~ 99 (392)
T PRK12382 22 FAVFLTYMTVGLPLPVIPLFVHHDLGFGN--TMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYL 99 (392)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcCCcH--HHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 3344444455566677775 567888764 457899999999999999999999999999999999988877665432
Q ss_pred --hh-----cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhH
Q 011277 136 --AT-----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR 208 (489)
Q Consensus 136 --~~-----~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr 208 (489)
+. ..|++.++++|+++|++.+...+....++.|++|+++|++++++++.+..+|..+++.++..+.+..+ ||
T Consensus 100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~ 178 (392)
T PRK12382 100 LAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG-FA 178 (392)
T ss_pred hhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC-hH
Confidence 22 35788899999999999998888788889999999999999999999999999899988877666666 68
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchh
Q 011277 209 ICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR 288 (489)
Q Consensus 209 ~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (489)
+.+++..+..++........||++. ++++ +. +.++..+ ..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----------~~---------------------~~~~~~~--~~~ 219 (392)
T PRK12382 179 ALALTTMVLPLLAWAFNGTVRKVPA------HAGE----------RP---------------------SLWSVVG--LIW 219 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCC------Cccc----------Cc---------------------hHHHHHH--HHH
Confidence 8776543333322222222233211 0000 00 0000000 000
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHH
Q 011277 289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS-SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367 (489)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~ 367 (489)
.......+.... ......+.+..+++.+.+ .+......+++..++.++.+++.||+|+|+.+..+.....++..+
T Consensus 220 ~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~ 295 (392)
T PRK12382 220 KPGLGLALQGVG----FAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLL 295 (392)
T ss_pred HhHHHHHHHHHH----HhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHH
Confidence 000001111111 111112222233333332 344455566777889999999999999999887776666655444
Q ss_pred HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277 368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 447 (489)
.... ++ . +.......+...+.+. ..|.......|.+|++.|+++.|+.+...+++..++|.+.+.+.+..|
T Consensus 296 ~~~~-----~~-~--~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g 366 (392)
T PRK12382 296 LWLA-----PT-A--WVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG 366 (392)
T ss_pred HHHc-----cc-H--HHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3221 11 1 1111122222222221 223444466788999999999999999999999999999998889889
Q ss_pred CchhhHHHHHHHHHHHHHHHh
Q 011277 448 PQLLYSIFGTFCLMAVAFVKR 468 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~ 468 (489)
+...|.+.+.+.+++.+....
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 367 YPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 988888888777776665543
No 47
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.96 E-value=7.4e-27 Score=230.78 Aligned_cols=352 Identities=21% Similarity=0.217 Sum_probs=213.8
Q ss_pred hhccceeeccchhhhhhhcCCCCchhHHHHHHH--HHHH---HHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh
Q 011277 63 FGYHLGVVNEPLESISLDLGFNGNTLAEGLVVS--MCLG---GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT 137 (489)
Q Consensus 63 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s--~~~~---g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~ 137 (489)
+.+|...++...+.+.+++..+.++.+.+...+ .+.. +..+++++.|+++||+|||+++..+.+++.++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 84 (394)
T TIGR00883 5 EWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGL 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 344444445555556666544222333333333 3333 33478999999999999999999999999999999999
Q ss_pred cchHH--------HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc--------
Q 011277 138 TRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-------- 201 (489)
Q Consensus 138 ~~~~~--------~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~-------- 201 (489)
++++. .+++.|+++|++.+...+....++.|++|+++|++..++...+..+|..+++.++..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~ 164 (394)
T TIGR00883 85 LPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDAL 164 (394)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHh
Confidence 99876 47889999999999999999999999999999999999999999999888877654332
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHh
Q 011277 202 EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL 281 (489)
Q Consensus 202 ~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (489)
+..+ ||+.|++..+..++..+.....||+|++...+++. +....+.++.
T Consensus 165 ~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~ 213 (394)
T TIGR00883 165 LEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKH------------------------------KKKRGPIRET 213 (394)
T ss_pred hccc-hHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhcc------------------------------ccccCCHHHH
Confidence 2234 79999876655555444445567765431110000 0001123333
Q ss_pred hhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh
Q 011277 282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS 357 (489)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~ 357 (489)
+++++.+ ............. .......+.+..+ +..+.+ .+.......++..++.++.+++.||+|||+.+...
T Consensus 214 ~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~ 291 (394)
T TIGR00883 214 LTKHRKP-FLLGLGLVIATTT-TFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIF 291 (394)
T ss_pred HHhchHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 4333311 1111111111111 1112222333333 333433 33455566788889999999999999999976644
Q ss_pred hHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHH-HHHHHHHHH
Q 011277 358 FFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV-HWVINFFVG 436 (489)
Q Consensus 358 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~ 436 (489)
.....+........... ... .+......++.....+. ..+....+..|.+|++.|+++.++...+ ..+++.++|
T Consensus 292 ~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p 366 (394)
T TIGR00883 292 TVLAALLAVPLLMALLD--SGS--FTLFFFLVLGLALIGGM-YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAP 366 (394)
T ss_pred HHHHHHHHHHHHHHHhc--CCc--hHHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHH
Confidence 43333222111111110 111 11111222222332222 2334556889999999999999986555 456777889
Q ss_pred HHHHHHHHHhC-Cchhh
Q 011277 437 LLFLRLLEQLG-PQLLY 452 (489)
Q Consensus 437 ~~~~~l~~~~g-~~~~~ 452 (489)
.+.+.+.+..| +...+
T Consensus 367 ~~~g~l~~~~g~~~~~~ 383 (394)
T TIGR00883 367 YIAAALVAMTGDWYAIG 383 (394)
T ss_pred HHHHHHHHHcCcchhHH
Confidence 88888888877 44333
No 48
>PRK03699 putative transporter; Provisional
Probab=99.96 E-value=1.9e-26 Score=227.89 Aligned_cols=361 Identities=14% Similarity=0.114 Sum_probs=236.4
Q ss_pred HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~ 132 (489)
....+++.++.+.+....+..+|.+.+++|++.+ +.++..+.+.+++.+++++.|+++||+|||+++..+.+++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~--~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~ 86 (394)
T PRK03699 9 TWISFLSYALTGALVIVTGMVMGPIAEYFNLPVS--SMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAV 86 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455667777888877888889999999988644 56889999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccc-ccCCchhHHHH
Q 011277 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV-KEIAGWWRICF 211 (489)
Q Consensus 133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l-~~~~~~wr~~f 211 (489)
++.+++++++.+++.|+++|++.|...+....++.|++|+++|++..+.......+|..+++.+...+ .+..+ ||+.|
T Consensus 87 ~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-w~~~f 165 (394)
T PRK03699 87 AGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-WYWVY 165 (394)
T ss_pred HHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHH
Confidence 99999999999999999999999988888888999999999999999888777777766666665443 33345 79999
Q ss_pred HHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011277 212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF 291 (489)
Q Consensus 212 ~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (489)
++..+..++..+..++ .+.|+. + +.++ ++ ++.. .+.. .++..+...
T Consensus 166 ~~~~~~~~~~~~~~~~-~~~p~~---~-~~~~---------~~-------------~~~~--~~~~-----~~~~~~~~~ 211 (394)
T PRK03699 166 ACIGLVYVAIFILTLF-SEFPAL---G-KHAP---------KA-------------DKPV--AKEK-----WGIGVLFLA 211 (394)
T ss_pred HHHHHHHHHHHHHHHh-cCCccc---c-ccCc---------cc-------------cCcc--cccc-----CChHHHHHH
Confidence 8765555444333222 222210 0 0000 00 0000 0000 011222222
Q ss_pred HHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHH
Q 011277 292 IGSTLFALQQLSGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367 (489)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~ 367 (489)
...++.... ......+.+..+ +..+.+ .+.......++..+|.++.++++||++||+.+........+...+
T Consensus 212 ~~~~~~~~~----~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~ 287 (394)
T PRK03699 212 IAALLYILA----QLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL 287 (394)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence 222221111 122233444444 334554 344555666788999999999999999998877655444443322
Q ss_pred HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277 368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 447 (489)
.... .+... ..+ ..+..+.... +..|....+..|..| +.+++..+......++++.++|.+.+.+.+..|
T Consensus 288 ~~~~-----~~~~~--~~~-~~~~~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g 357 (394)
T PRK03699 288 FVNT-----DDPSH--LLY-AILGLGFFSS-AIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG 357 (394)
T ss_pred HHHc-----CCchH--HHH-HHHHHHHHHH-HHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Confidence 2111 11111 111 1112222111 122333345667666 456788889888999999999999999988888
Q ss_pred CchhhHHHHHHHHHHHH
Q 011277 448 PQLLYSIFGTFCLMAVA 464 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~~ 464 (489)
+...+.+.+.+++++.+
T Consensus 358 ~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 358 LQAALLTANGLYAVVFV 374 (394)
T ss_pred chhhhhhhHHHHHHHHH
Confidence 87777666666555543
No 49
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.96 E-value=9.9e-27 Score=229.40 Aligned_cols=344 Identities=19% Similarity=0.198 Sum_probs=230.2
Q ss_pred HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~ 133 (489)
..+....+....+.+...+.+|.+.+|+|.+.+ +.++..+.+.++..+++++.|+++||+|||+++..+.++..++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 85 (385)
T TIGR00710 8 LLLGCLSILGPLGIDMYLPAFPEIAADLSTPAS--IVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSL 85 (385)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHH
Confidence 333444455566777788889999999998644 568999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (489)
Q Consensus 134 l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~ 213 (489)
+.+.+++++.+.+.|++.|++.+...+....++.|++|+++|++..++.+....+|..+++.++..+.+..+ ||+.|++
T Consensus 86 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~~ 164 (385)
T TIGR00710 86 GLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFAF 164 (385)
T ss_pred HHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHH
Confidence 999999999999999999999999988999999999999999999999999999999888888877766556 6998887
Q ss_pred HHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011277 214 SIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (489)
Q Consensus 214 ~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (489)
..+..++..+ ..+..||+++. ++.++.+ +. ...+++.+++++++....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------------~~--------------~~~~~~~~~~~~~~~~~~ 213 (385)
T TIGR00710 165 LSLAGILLSALIFFILPETLPY----EARIQIS-------------TY--------------FETFLLLLKSKMFWGYAL 213 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC----cccCCHH-------------HH--------------HHHHHHHHcCchhHHHHH
Confidence 5554444333 33456665421 0000000 00 011223344444443332
Q ss_pred HHHHHHHHhhhhHHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHH
Q 011277 293 GSTLFALQQLSGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368 (489)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~ 368 (489)
........ ......+.+..+ +..+.+ .+.......++.+++.++.+++.||+++|+.+..+.....++..+.
T Consensus 214 ~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 289 (385)
T TIGR00710 214 IYGASFGG----FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLL 289 (385)
T ss_pred HHHHHHHH----HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 22111111 111122223222 234443 3455666778889999999999999999998877766666555444
Q ss_pred HHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 011277 369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFL 440 (489)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 440 (489)
....... .. ............+.+.+. ..+....+..|.+| +.|+++.++.+...+.++.+.+....
T Consensus 290 ~~~~~~~--~~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 290 EITAILG--LG-SWAMIIGPMMFVGIGNSM-ISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHhc--cc-hHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322111 01 111111112222222221 22344456678877 67999999999888876666666655
No 50
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.96 E-value=2.3e-26 Score=227.28 Aligned_cols=341 Identities=18% Similarity=0.191 Sum_probs=216.7
Q ss_pred hccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHH
Q 011277 64 GYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG 143 (489)
Q Consensus 64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~ 143 (489)
....+...+++|.+.+++|.+.+ +.++..+.+.++..+++++.|+++||+|||+.+..+.+++.++..++..+++++.
T Consensus 16 ~~~~~~~~~~lp~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~ 93 (392)
T PRK10473 16 PAGIDMYLVGLPRIAADLNASEA--QLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSL 93 (392)
T ss_pred HHHHHHHhhhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 33344555789999999987644 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH
Q 011277 144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL 223 (489)
Q Consensus 144 l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~ 223 (489)
+++.|+++|++.+...+....++.|.+|+++|++..++......+|..+++.++..+.+..+ ||+.|++..+..++..+
T Consensus 94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~~~~~~~i~~~ 172 (392)
T PRK10473 94 FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYTMAAMGILVLL 172 (392)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHHHHHHHHHHHH
Confidence 99999999999998888888999999999999999999999888888888888776655556 69988876544444333
Q ss_pred -HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277 224 -AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL 302 (489)
Q Consensus 224 -~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (489)
.....||++.. + +.++ .+ .....++.++++++........+......
T Consensus 173 ~~~~~~~~~~~~---~-~~~~-~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (392)
T PRK10473 173 LSLFILKETRPA---R-APAA-SS---------------------------KPRENSESLLNRFFLSRLVITTLSVTVIL 220 (392)
T ss_pred HHHHHcCCCCCc---c-cCCc-cc---------------------------hHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 34556776320 0 0000 00 00011122333333322221111111111
Q ss_pred hhHHHHHHhHHH-HHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCC
Q 011277 303 SGINAIFYFSSS-VFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG 378 (489)
Q Consensus 303 ~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 378 (489)
....+.+. ..+..+.+. +......+++.+++.++.+++.||+|||+.+..+.....++..........
T Consensus 221 ----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~---- 292 (392)
T PRK10473 221 ----TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSH---- 292 (392)
T ss_pred ----HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 11111222 223345443 345566778888999999999999999998887776665555444332211
Q ss_pred chhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHH
Q 011277 379 SASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGT 457 (489)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 457 (489)
.. ..........+++.+.+. ....++.|.+.|+ +...+...++..+++.+.+.+.+..|......+.+.
T Consensus 293 --~~--~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 293 --AV--SLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred --HH--HHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 01 111112222222222211 2334555655553 333444455666667666677777776543334443
No 51
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.96 E-value=2.8e-27 Score=239.06 Aligned_cols=360 Identities=15% Similarity=0.126 Sum_probs=224.8
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc--chHHHHHHHHHHHhhhccc
Q 011277 80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLIGMLLGRFVVGTGMGL 157 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~--~~~~~l~~~R~l~G~g~g~ 157 (489)
|++++ ..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++..+ .++..+++.|+++|++.+.
T Consensus 70 ~~~~s--~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~ 147 (465)
T TIGR00894 70 NFKWS--GALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGS 147 (465)
T ss_pred CCCCC--HHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhccc
Confidence 55554 4567899999999999999999999999999999999999999988887543 5688899999999999999
Q ss_pred ccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC-CchhHHHHHHHHHHHHHHHHHh-hhccCChHHH
Q 011277 158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWWRICFWVSIVPAAILCLAM-VFCAESPHWL 235 (489)
Q Consensus 158 ~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~~wr~~f~~~~i~~~~~~~~~-~~~~Esp~~l 235 (489)
..+....++.|++|+++|+++.++...+..+|..++++++..+.+. .+ ||+.|++.++..++..+.. .+.+|+|+..
T Consensus 148 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~ 226 (465)
T TIGR00894 148 VSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIH 226 (465)
T ss_pred chhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCcccC
Confidence 9999999999999999999999999999999998888887776665 36 6999988766665554443 4456666421
Q ss_pred HhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHH
Q 011277 236 YKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV 315 (489)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (489)
+...++.++..++. . +.++.+.....++++.++++..+......+.... ..+....|.|.+
T Consensus 227 --~~~~~~~~~~i~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~~ 287 (465)
T TIGR00894 227 --PCISKFEKKYINSS------------L-QGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFW----LYTILPTYLPTF 287 (465)
T ss_pred --CCCCHHHHHHHHhh------------c-ccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 11111111111100 0 0001111122346667766665555443333222 222333444444
Q ss_pred HHh-cCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHH---HhhHHHHHHH---HHHHHHhhccCCCchhhHHH
Q 011277 316 FKS-AGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ---WSFFSMAVSM---AIQVAASSSYIPGSASLYLS 385 (489)
Q Consensus 316 ~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~---~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~ 385 (489)
+++ .+.+ .++......++..++.+++|+++||+++|+... ...+...++. ........ ..... .+..
T Consensus 288 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~ 364 (465)
T TIGR00894 288 ISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALP-YLSAA--FYLT 364 (465)
T ss_pred HHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HcCCc--hHHH
Confidence 432 3443 455666677888999999999999986542110 0001111111 11111111 11111 1111
Q ss_pred HHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--C-CchhhHHHHHHHHHH
Q 011277 386 VGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL--G-PQLLYSIFGTFCLMA 462 (489)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g-~~~~~~~~~~~~~~~ 462 (489)
+..+.+...... +..+.......|..| +.++...++.+..+.+++.++|.+.+.+.+.. + +...|.+.+++++++
T Consensus 365 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~ 442 (465)
T TIGR00894 365 IIILTLANAVSS-GPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILC 442 (465)
T ss_pred HHHHHHHHHHhh-hhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHH
Confidence 111221111111 112233334557766 58999999999999999999998887665532 2 455667777666666
Q ss_pred HHHH
Q 011277 463 VAFV 466 (489)
Q Consensus 463 ~~~~ 466 (489)
.++.
T Consensus 443 ~i~~ 446 (465)
T TIGR00894 443 VIFY 446 (465)
T ss_pred HHHe
Confidence 5543
No 52
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.4e-28 Score=229.40 Aligned_cols=370 Identities=18% Similarity=0.169 Sum_probs=237.4
Q ss_pred cchHHHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhH
Q 011277 46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA 125 (489)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~ 125 (489)
++.....++++++.+.+.-.|-..+....+.+++.+|++++ ..|++.+.+.+.+.+.+++.|+|+|||.||+++..+.
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s--~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~ 105 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDS--ELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGI 105 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCch--hccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHH
Confidence 34445567888888888888877777788999999998765 4589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc
Q 011277 126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205 (489)
Q Consensus 126 ~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~ 205 (489)
.+++++.++++++..|++++++|.+.|+|.+...++.+.+++|.+|..+|+++.++++++..+|..+|.+.|..+.+..+
T Consensus 106 ~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 106 FIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhc
Q 011277 206 WWRICFWVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG 284 (489)
Q Consensus 206 ~wr~~f~~~~i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (489)
||||.|+..++..++..++ .++++|.+| +..+|..++. + ..+.........+.+.+.
T Consensus 186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~~~----~-------------~~~~~ts~~kDl~~l~~~ 243 (493)
T KOG1330|consen 186 WWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDGEN----K-------------MVKPFTSVWKDLKVLAKI 243 (493)
T ss_pred ceEEEEEeehHHHHHHHHHHHhhccCccc-----ccccccccCC----c-------------CCCCccchHHHHHHHHcc
Confidence 9999999877776666555 445566432 1111111000 0 000000111112222232
Q ss_pred cchhHHHHHHHHHH--HHhhhhHHHHHHhHHHHHHhcCCC--cc-hHHHHHHHHHHHHHHHHHHHhhhcCCc----hhHH
Q 011277 285 RHFRVVFIGSTLFA--LQQLSGINAIFYFSSSVFKSAGLS--SG-LANVFVGIANLLGSVVAMVLMDKLGRK----ALLQ 355 (489)
Q Consensus 285 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~i~~~~g~~~~g~l~dr~grr----~~~~ 355 (489)
+.++...+..+... ...+.. ..+-+.+..+...+.+ .+ .......++..+|.+++|.++||+.|+ ....
T Consensus 244 ~v~v~~sl~~~a~~fv~Gs~sw--w~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~ 321 (493)
T KOG1330|consen 244 KVFVLSSLGIIAAQFVIGSLSW--WAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLR 321 (493)
T ss_pred CceeeehHHHHHHHHhccccch--hhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchh
Confidence 33333322222211 111111 1111222222223222 23 344555677888889999999985331 1111
Q ss_pred Hh----hHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHH
Q 011277 356 WS----FFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVI 431 (489)
Q Consensus 356 ~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~ 431 (489)
+. ......+...+..... ......+..+...++.......++.+. .-...|+.|+++|+++.++...+..+.
T Consensus 322 ~~q~~~~~g~~~s~~~L~~~~~---~~~~s~~~~~il~~~g~~~~~~~~a~n-~~i~l~vV~p~~Rt~a~a~~~~~~h~f 397 (493)
T KOG1330|consen 322 ASQLSAALGAPLSIPFLFLFPA---FTSSSMIFGLILFLVGETISWFNWATN-NPIFLEVVPPSRRTTAYALDTVFEHIF 397 (493)
T ss_pred HHHHHHhhhhhHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHhcccccc-cceeeEecCcccccHHHHHHHHHHHHh
Confidence 11 1111222111111111 111223332222222112222233333 236789999999999999998776554
Q ss_pred HH-HHHHHHHHHHHH
Q 011277 432 NF-FVGLLFLRLLEQ 445 (489)
Q Consensus 432 ~~-~~~~~~~~l~~~ 445 (489)
+- ..|.+.+.+.+.
T Consensus 398 gd~~~p~ivGilsd~ 412 (493)
T KOG1330|consen 398 GDAASPYIVGILSDK 412 (493)
T ss_pred ccCCCcceehhHHHH
Confidence 43 344455555554
No 53
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.95 E-value=4.1e-26 Score=221.67 Aligned_cols=340 Identities=27% Similarity=0.391 Sum_probs=252.9
Q ss_pred HHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHH
Q 011277 56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS 135 (489)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~ 135 (489)
+.+..+..+.+....++..|.+.+++|.+. .+.++..+...++..+++++.|+++||+|||+.+..+.++..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~ 81 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSA--SQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 344556667777778888899999987654 456889999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHH
Q 011277 136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215 (489)
Q Consensus 136 ~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~ 215 (489)
..+++++.+.+.|++.|++.+...+....++.|++|+++|++..++......+|..+++.++..+.+..+ ||+.+++..
T Consensus 82 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~ 160 (352)
T cd06174 82 AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILA 160 (352)
T ss_pred HHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998887766656 699988765
Q ss_pred HHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011277 216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST 295 (489)
Q Consensus 216 i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (489)
+..++..+...+.+ +.++.......
T Consensus 161 ~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~~~ 185 (352)
T cd06174 161 ILGLLLALLLLFLL-------------------------------------------------------RLLLLLALAFF 185 (352)
T ss_pred HHHHHHHHHHHHHH-------------------------------------------------------HHHHHHHHHHH
Confidence 55554444333221 00111111111
Q ss_pred HHHHHhhhhHHHHHHhHHHHHHhc-CCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCch-hHHHhhHHHHHHHHHHHH
Q 011277 296 LFALQQLSGINAIFYFSSSVFKSA-GLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKA-LLQWSFFSMAVSMAIQVA 370 (489)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~-~~~~~~~~~~i~~~~~~~ 370 (489)
+.. ........+.+...++. +.+ .+.......++..++.++.+++.||++||+ .+..+.....++......
T Consensus 186 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 261 (352)
T cd06174 186 LLS----FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL 261 (352)
T ss_pred HHH----hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 111 11122222333333332 333 355667778899999999999999999999 877777766666554432
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Q 011277 371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQL 450 (489)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 450 (489)
.. . .+.......+...+.+ ...+....+..|..|++.|++..++.+...+++..+++.+.+.+.+..++..
T Consensus 262 ~~-----~---~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~ 332 (352)
T cd06174 262 AP-----S---LALLLVALLLLGFGLG-FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGG 332 (352)
T ss_pred hc-----c---HHHHHHHHHHHHHHHh-ccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcch
Confidence 21 1 1111222222223222 2356677789999999999999999999999999999999988888888888
Q ss_pred hhHHHHHHHHHHHHHH
Q 011277 451 LYSIFGTFCLMAVAFV 466 (489)
Q Consensus 451 ~~~~~~~~~~~~~~~~ 466 (489)
.+.+.+++.++..+..
T Consensus 333 ~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 333 VFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888887776654
No 54
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.95 E-value=5.5e-26 Score=225.93 Aligned_cols=374 Identities=17% Similarity=0.122 Sum_probs=241.9
Q ss_pred HHHHHHHhhhhccceeeccchhhhhhhcCCCCchh---HHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHH
Q 011277 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTL---AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII 130 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i 130 (489)
....++.++.+...+...+.+|.+.+|+|.+..+. ..+++.+.+.++..+++++.|+++||+|||+++..+.++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 96 (408)
T PRK09874 17 TVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI 96 (408)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence 34455667777777778888999999999875542 247888899999999999999999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHH
Q 011277 131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC 210 (489)
Q Consensus 131 ~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~ 210 (489)
+..+.+.+++++.+++.|++.|++.+ ..+....++.|.+|+++|+++.+++.....+|..+++.++..+.+..+ ||+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~ 174 (408)
T PRK09874 97 VMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRPV 174 (408)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHH
Confidence 99999999999999999999999865 456666788999999999999999999999998888888877766556 6998
Q ss_pred HHHHHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhH
Q 011277 211 FWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV 289 (489)
Q Consensus 211 f~~~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (489)
|++..+..++..+ ...+.+|.++. ..+.++ .. .++ ..+.+++++...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~-------------~~~--------------~~~~~~~~~~~~ 222 (408)
T PRK09874 175 FFITASVLFLCFLVTLFCIRENFQP---VSKKEM--LH-------------MRE--------------VVTSLKNPKLVL 222 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccc---ccchhh--hH-------------HHH--------------HHHhCcCCchHH
Confidence 8876554444333 33445554311 000000 00 000 011122222222
Q ss_pred HH-HHHHHHHHHhhhhHHHHHHhHHHHHHhcCC---CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHH
Q 011277 290 VF-IGSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM 365 (489)
Q Consensus 290 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~ 365 (489)
.. ...................|..+..+.... ..+......+++.+++.+..++++||+|||+.+..+.....+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 302 (408)
T PRK09874 223 SLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLL 302 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 11 111111110000001111121111111110 01223334556777888889999999999998877665544433
Q ss_pred HHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 366 AIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ 445 (489)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (489)
+...... . . +......++.+++.+. ..|....+..+..|++.|++..++...+..++..++|.+.+.+.+.
T Consensus 303 ~~~~~~~-----~-~--~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~ 373 (408)
T PRK09874 303 IPMSFVQ-----T-P--LQLGILRFLLGAADGA-LLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN 373 (408)
T ss_pred HHHHHhc-----c-H--HHHHHHHHHHHhhhHh-hHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh
Confidence 3322111 1 1 1111111222222221 2233344566778889999999999999999999999988888888
Q ss_pred hCCchhhHHHHHHHHHHHHHHHhhc
Q 011277 446 LGPQLLYSIFGTFCLMAVAFVKRNV 470 (489)
Q Consensus 446 ~g~~~~~~~~~~~~~~~~~~~~~~~ 470 (489)
.|+...|.+.+++.+++.++.++..
T Consensus 374 ~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 374 YGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777776655443
No 55
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.95 E-value=7.7e-26 Score=222.27 Aligned_cols=358 Identities=16% Similarity=0.129 Sum_probs=228.0
Q ss_pred HHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHH-hHHHHHHHHHHHh
Q 011277 59 SSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL-CALPMIIGASISA 136 (489)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~-~~~~~~i~~~l~~ 136 (489)
..++.+...+...+.+|. +.+++|.+. .+.|++.+.+.++..+.+++.|+++||+|||+.++. +.++..++.++++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARP--AMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence 345566666777777776 457888764 456899999999889999999999999999887654 5566667778889
Q ss_pred hcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhh--hhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHH
Q 011277 137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY--GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214 (489)
Q Consensus 137 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~--~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~ 214 (489)
.++|++.+++.|+++|.+.+...+....+..|+.|+++|++. .+.......+|..+++.++..+.+..+ ||+.|++.
T Consensus 83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~~ 161 (375)
T TIGR00899 83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLTA 161 (375)
T ss_pred hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHHH
Confidence 999999999999999988777777777788899888777754 567777778888888888777766566 69999987
Q ss_pred HHHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHH
Q 011277 215 IVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG 293 (489)
Q Consensus 215 ~i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (489)
++..++..+. .+++||+|+.. +.++. . .+.++.+++++++.....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~---------~---------------------~~~~~~~~~~~~~~~~~~ 207 (375)
T TIGR00899 162 ALAFVLCGVLVWLFLPSYPRGA----PGALT---------R---------------------LEVRGLLASRDTRLLFVA 207 (375)
T ss_pred HHHHHHHHHHHHHhCCCcccCc----ccccC---------c---------------------chhhhhhcCcchHHHHHH
Confidence 6655544333 44578876321 00000 0 001112333444433332
Q ss_pred HHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHH
Q 011277 294 STLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA 370 (489)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~ 370 (489)
..+............+. ...+..+.+. +.......+...++.++.+++.||+|||+.+..+.....+.......
T Consensus 208 ~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 284 (375)
T TIGR00899 208 CTLMWGCNILYIINMPL---LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA 284 (375)
T ss_pred HHHHHHHHHHHHhhhHH---HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 22221111111111111 2223334433 33333344456677888999999999999877665443333222211
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Q 011277 371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQL 450 (489)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 450 (489)
.. + .+.......+...+.+. ..+....+..|..|++ |+++.++.+...+++..++|.+.+.+.+..|+..
T Consensus 285 ~~-----~---~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~ 354 (375)
T TIGR00899 285 DN-----S---LWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHA 354 (375)
T ss_pred HH-----H---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 11 1 11111111222222221 2244455778988864 6699999999999999999999888888888888
Q ss_pred hhHHHHHHHHHHHHHH
Q 011277 451 LYSIFGTFCLMAVAFV 466 (489)
Q Consensus 451 ~~~~~~~~~~~~~~~~ 466 (489)
.+.+.+++++++.+..
T Consensus 355 ~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 355 VYWFAIVMLIVALFCL 370 (375)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877777766665544
No 56
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.95 E-value=1.1e-25 Score=221.93 Aligned_cols=365 Identities=14% Similarity=0.076 Sum_probs=230.9
Q ss_pred HHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHH
Q 011277 56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS 135 (489)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~ 135 (489)
+.++.++.....+......+.+.+|++.+. .+.+++.+.+.+++.+.+++.|+++||+|||++++.+.++++++++++
T Consensus 8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~ 85 (393)
T PRK11195 8 IMAAQFFSALADNALLFAAIALLKELHYPD--WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM 85 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence 344555555544444455556678887653 356899999999999999999999999999999999999999998887
Q ss_pred hhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHH
Q 011277 136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215 (489)
Q Consensus 136 ~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~ 215 (489)
+++.+. ++.|+++|++.+...|...+++.|++|+++|+++.++.+....+|..+||.+++.+.+.. |+..+++..
T Consensus 86 ~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~--~~~~~~i~~ 160 (393)
T PRK11195 86 LFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH--AEAALAVCA 160 (393)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 776664 788999999999999999999999999999999999999999999999999988776532 566666544
Q ss_pred HHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011277 216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST 295 (489)
Q Consensus 216 i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (489)
...++..+....+||+|... +++.++..+.. ++.. ...+.+++++.++.......
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~-------------~~~~----------~~~~~l~~~~~~~~~~~~~~ 215 (393)
T PRK11195 161 LIYLLAALFNLFIPRLGARR--PGQSWNPIALL-------------RDFF----------HACRVLWRDKLGRFSLAGTT 215 (393)
T ss_pred HHHHHHHHHHhcCCCCcccc--cccCCCHHHHH-------------HHHH----------HHHHHHHhCchhHHHHHHHH
Confidence 33333344456678875321 10100000000 0000 01223445555544333222
Q ss_pred HHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhcc
Q 011277 296 LFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSY 375 (489)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~ 375 (489)
+............+.|.+..++......|......+++.+++++..+++.||.++|+.+..+.. .++........
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~---- 290 (393)
T PRK11195 216 LFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ---- 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH----
Confidence 2211111111122233344443333345677788889999999999999999998887766532 22222211111
Q ss_pred CCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHH
Q 011277 376 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI-RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSI 454 (489)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 454 (489)
. ..+.......+.+++......|.. ....|..|++. ++++.++.+...+++..++..+.. ..+..|....+.+
T Consensus 291 --~--~~~~~~~~~~~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 364 (393)
T PRK11195 291 --H--SLLPAYPLLILIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYS-LLVKLGVPVVAVI 364 (393)
T ss_pred --h--HHHHHHHHHHHHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHH-HHHHcCCCHHHHH
Confidence 1 111122222223333332233333 34567656554 799999999999998888887665 4467777766666
Q ss_pred HHHHHHHHH
Q 011277 455 FGTFCLMAV 463 (489)
Q Consensus 455 ~~~~~~~~~ 463 (489)
.+...+...
T Consensus 365 ~~~~~~~~~ 373 (393)
T PRK11195 365 VGFGLLVAL 373 (393)
T ss_pred HHHHHHHHH
Confidence 544443333
No 57
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.95 E-value=3.7e-25 Score=216.68 Aligned_cols=351 Identities=16% Similarity=0.115 Sum_probs=216.9
Q ss_pred ceeeccchhhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc-----ch
Q 011277 67 LGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----RN 140 (489)
Q Consensus 67 ~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~-----~~ 140 (489)
-...++..+.+.+ |+|++.+ +.+++.+++.+++.++.++.|++.||+|.|+++..+.++.++.+++.+++ ++
T Consensus 50 w~~~~~l~~~~~~~~~~ls~~--q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s 127 (462)
T PRK15034 50 WMLFSAVTVNLNKIGFNFTTD--QLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTP 127 (462)
T ss_pred HHHHHHHHHHhhhhhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 3445555666655 7888754 56899999999999999999999999999999999999999999999876 89
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHH----HHHHHhh-ccccc------------C
Q 011277 141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL----MGSLLIG-IPVKE------------I 203 (489)
Q Consensus 141 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~----~~g~~~~-~~l~~------------~ 203 (489)
++.+++.|++.|++ |..++.....+++++|+++||++.++......+|. .++|.+. ..+.. .
T Consensus 128 ~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~ 206 (462)
T PRK15034 128 FGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGS 206 (462)
T ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 99999999999998 66788888999999999999999999964444444 3333321 11111 0
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhc-cCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhh
Q 011277 204 AGWWRICFWVSIVPAAILCLAMVFC-AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL 282 (489)
Q Consensus 204 ~~~wr~~f~~~~i~~~~~~~~~~~~-~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (489)
.-|||...++-.+..++..++.++. ++.|. .+. ......+.+
T Consensus 207 ~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-----~~~--------------------------------~~~~~~~vl 249 (462)
T PRK15034 207 VMSLANAAWIWVPLLAIATIAAWSGMNDIAS-----SRA--------------------------------SIADQLPVL 249 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-----ccc--------------------------------CHHHHHHHh
Confidence 1236777766544444444343332 22211 000 001123345
Q ss_pred hccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cC-CCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHH
Q 011277 283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AG-LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360 (489)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~ 360 (489)
++++.+......++ .+..+....++.|.+.+. .+ ...........+...+..+++|+++||+|+|+++.+++..
T Consensus 250 k~~~~Wllslly~~----tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~ 325 (462)
T PRK15034 250 QRLHLWLLSLLYLA----TFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIF 325 (462)
T ss_pred CCCchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHH
Confidence 55555544433222 222222233333333322 11 1111122333456667778999999999999999888876
Q ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCc---------------------hhhhh
Q 011277 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPS---------------------RIRAK 419 (489)
Q Consensus 361 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---------------------~~r~~ 419 (489)
+.++.......... ......+.....++...+..++|.+.+. -+++..||+ +.-+.
T Consensus 326 ~~i~~~~~~l~lp~--~~~~~~~~~~~~~~~l~~~~G~gngsvf-k~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 402 (462)
T PRK15034 326 MAIFSALLFLTLPG--TGSGNFIAFYAVFMGLFLTAGLGSGSTF-QMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAA 402 (462)
T ss_pred HHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHhcccchHHH-HhhHHHHhhhhhhcccccccchhHHhhHHHHHHHH
Confidence 66655433222211 1111222222222222333444444443 356777774 15678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHH
Q 011277 420 AMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVA 464 (489)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~ 464 (489)
..|++..++-+|+++.|..++...+..| +...|.++.+.++++..
T Consensus 403 v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 448 (462)
T PRK15034 403 ALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVL 448 (462)
T ss_pred HHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 8889999999999999988887777655 34455555555544443
No 58
>PRK11043 putative transporter; Provisional
Probab=99.95 E-value=1.9e-25 Score=221.41 Aligned_cols=339 Identities=20% Similarity=0.183 Sum_probs=222.2
Q ss_pred hhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcch
Q 011277 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN 140 (489)
Q Consensus 61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~ 140 (489)
.......+.+.+.+|.+.+++|.+.+ +.++..+.+.+++.++++++|+++||+|||+++..+.++..++.++++.+++
T Consensus 16 ~~~~~~~~~~~p~~~~i~~~~~~s~~--~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 93 (401)
T PRK11043 16 MLGFLATDMYLPAFKAIQADLQTSAS--AVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES 93 (401)
T ss_pred HHHHHHHHHHHhhHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 33334556677888999999988644 5689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277 141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI 220 (489)
Q Consensus 141 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~ 220 (489)
++.+++.|+++|++.+...+....++.|++|+++|++..+.......+|..+++.++..+.+..+ ||+.|++..+..++
T Consensus 94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~~ 172 (401)
T PRK11043 94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATLFAITLL 172 (401)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHH
Confidence 99999999999999887777777889999999999988888887788888888888877766666 69998876665555
Q ss_pred HHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHH
Q 011277 221 LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300 (489)
Q Consensus 221 ~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (489)
..+..++.+|+++ +++.++. ..++++.++++.++............
T Consensus 173 ~~~~~~~~~~~~~----~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (401)
T PRK11043 173 LILPTLRLKPSKK----ARKQSQD------------------------------ALTFKQLLKSKTYLGNVLIFAACSAA 218 (401)
T ss_pred HHHHHHHcCCCCC----ccccchH------------------------------HHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 5555555555432 0000000 01122333333333222211111111
Q ss_pred hhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCC
Q 011277 301 QLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP 377 (489)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 377 (489)
......+.+...++.+.+. ++......++..+|.++.+++.||+++|+..........++........... .
T Consensus 219 ----~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 293 (401)
T PRK11043 219 ----FFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS-H 293 (401)
T ss_pred ----HHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc-c
Confidence 1111223344444455543 3444555677788899999999999998876555444444433322221111 1
Q ss_pred CchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 378 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ 445 (489)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (489)
... +..+..........+ ...|.......|..| +.|+++.|+.+.++..++..++.+.+.+.+.
T Consensus 294 ~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 294 PSL--VPLLIPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred CcH--HHHHHHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 111 111111112222222 123333344556666 5799999999999888888888887776653
No 59
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.95 E-value=1e-26 Score=226.32 Aligned_cols=346 Identities=21% Similarity=0.329 Sum_probs=223.8
Q ss_pred HHHhhhhccceeeccchh-hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHh
Q 011277 58 LSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA 136 (489)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~ 136 (489)
++.++...+.+...+.+| .+.+++|.+.+ +.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++..+..
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPS--QIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSH--CHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence 445566666667788888 88899888755 457899999999999999999999999999999999999999977776
Q ss_pred hcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277 137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV 216 (489)
Q Consensus 137 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i 216 (489)
+++|++.+++.|+++|++.+...+....++.|++|+++|++..++...+..+|..+++.++..+.+..+ ||+.|++.++
T Consensus 81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~~ 159 (352)
T PF07690_consen 81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISAI 159 (352)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHHH
T ss_pred hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cccccccccc
Confidence 768888999999999999999999999999999999999999999999999999999999888876666 6999988766
Q ss_pred HHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcch-hHHHhhhccchhHHHHHH
Q 011277 217 PAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIV-KFEELLYGRHFRVVFIGS 294 (489)
Q Consensus 217 ~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 294 (489)
..++..++ ..+.+|+|+....+++.++. + .++.+.. .++...+++.++......
T Consensus 160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~-~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (352)
T PF07690_consen 160 LSLIAAILFILFLPEPPPPRERESPKESE-S-----------------------KKPKPLKPGFKSLFKNPVLWILLIAF 215 (352)
T ss_dssp HHHHHHHHHHCCC---STTTT--SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHHHHH
T ss_pred hhhhhhhhHhhhhhhcccccccccccccc-c-----------------------ccccccccccccccccchhhhhhhhh
Confidence 66655443 24444443210000000000 0 0000001 133344444444222222
Q ss_pred HHHHHHhhhhHHHHHHhHHHHHHhcC-CCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhh
Q 011277 295 TLFALQQLSGINAIFYFSSSVFKSAG-LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS 373 (489)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~ 373 (489)
.+............+.|....++..+ ...+.......+...++.++.+++.||+++|+..........+..........
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (352)
T PF07690_consen 216 FLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF 295 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred hHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111111112222122222221 12233456666777788999999999999987766555444444333221111
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHH
Q 011277 374 SYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVG 436 (489)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 436 (489)
. . .........++.+++.+. ..+....+..|..|++.|+++.|+.+.+.++++.++|
T Consensus 296 ~---~--~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 296 S---S--SPVWLIIALFLIGFGFGI-VFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp H---C--HHHHHHHHHHHHHHHHHH-HCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---h--hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 0 0 111111122223332222 2456667889999999999999999999999888876
No 60
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.95 E-value=8.2e-25 Score=216.71 Aligned_cols=364 Identities=13% Similarity=0.084 Sum_probs=223.8
Q ss_pred hhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHh---h
Q 011277 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---T 137 (489)
Q Consensus 61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~---~ 137 (489)
+............++.+.+|+|.+. .+.++..+.+.+++.+++++.|+++||+|||+++..+.+++++++.++. .
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~g~s~--~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~ 100 (402)
T TIGR00897 23 VVFMTGDGLEQGWLSPFLKALGLSP--QQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL 100 (402)
T ss_pred HHHHHhhhhHHHhHHHHHHHhCCCH--HHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333334445666778888764 4568999999999999999999999999999999999999988876553 3
Q ss_pred -cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHH-HHHHHhhcccccCCchhHHHHHHHH
Q 011277 138 -TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVKEIAGWWRICFWVSI 215 (489)
Q Consensus 138 -~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~-~~g~~~~~~l~~~~~~wr~~f~~~~ 215 (489)
..+++.+++.|+++|++.+...+....++.|.+|+++|+++++++..+..+|. ..+++++..+.+..+| +..+|...
T Consensus 101 ~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~-~~~~~~~~ 179 (402)
T TIGR00897 101 GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGE-MNTLWSAL 179 (402)
T ss_pred cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch-HHHHHHHH
Confidence 35788888999999999887777777788999999999999999999999996 5788877666555564 33333221
Q ss_pred HHHHH-HHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHH
Q 011277 216 VPAAI-LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGS 294 (489)
Q Consensus 216 i~~~~-~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (489)
....+ ..+..++.++.++ +++.++ +++. ++ ....++++++++.++......
T Consensus 180 ~~~~~~~~~~~~~~~~~~~----~~~~~~----------~~~~----~~----------~~~~~~~~~~~~~~~~~~~~~ 231 (402)
T TIGR00897 180 AFVLTGGVIALFSNKDIFT----PQHMQT----------REKF----SE----------LGKAATILFTNPNVLLGGMVR 231 (402)
T ss_pred HHHHHHHHHHHhccCCCCC----cccccC----------Ccch----hh----------HHHHHHHHHcChhHHHHHHHH
Confidence 11111 1122222333210 000000 0000 00 001133455555554443332
Q ss_pred HHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHhhhcCCchhHH-HhhHHHHHHHHHHHH
Q 011277 295 TLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQ-WSFFSMAVSMAIQVA 370 (489)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~-~~~~~~~i~~~~~~~ 370 (489)
.+... .......+.+...++.+.+.. .......++..++.+..|+++||++||+... .+.....++......
T Consensus 232 ~~~~~----~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~ 307 (402)
T TIGR00897 232 IINTI----GLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY 307 (402)
T ss_pred HHHHH----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 22221 122233444555555565533 3344566888999999999999999887653 222223332222221
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Q 011277 371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQL 450 (489)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 450 (489)
..... .+.. +......+.++.... +..|.. ....|..| +.|+++.|+.+...++++.++|.+.+.+.+..|+..
T Consensus 308 ~~~~~-~~~~--~~~~~~~~~~G~~~~-~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~ 381 (402)
T TIGR00897 308 IPQHF-GHSF--AVALIIAIALGIFLA-GYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIG 381 (402)
T ss_pred HHHcc-CCcH--HHHHHHHHHHHHHHH-HHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 11111 1111 111111222222222 122333 34567755 689999999999999999999999999998888877
Q ss_pred hhHHHHHHHHHHHHH
Q 011277 451 LYSIFGTFCLMAVAF 465 (489)
Q Consensus 451 ~~~~~~~~~~~~~~~ 465 (489)
.+.+.+++.+++.+.
T Consensus 382 ~~~~~a~~~~i~~~~ 396 (402)
T TIGR00897 382 VVWIFAALYVVSAFL 396 (402)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777766665544
No 61
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.95 E-value=3e-26 Score=230.03 Aligned_cols=372 Identities=16% Similarity=0.152 Sum_probs=225.6
Q ss_pred eeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHH-
Q 011277 68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL- 146 (489)
Q Consensus 68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~- 146 (489)
..++..+|.+.+++|.+.+ +.++..+.+.++..++.++.|+++||+|||++++.+.+++.+++++++++++++.+.+
T Consensus 36 ~~~~~~~~~i~~~~g~s~~--~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYS--ETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLT 113 (455)
T ss_pred cchhhhHHHHHHHhCcchh--HHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3356678899999998755 4578889999998999999999999999999999999999999999999999998865
Q ss_pred HHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhh
Q 011277 147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV 226 (489)
Q Consensus 147 ~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~ 226 (489)
.|+++|++.|...+....++.|+++ ++|+++.++...+..+|...++.++..+.+..+ ||+.|++.++..++..+..+
T Consensus 114 ~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g-wr~~f~~~~~~~~~~~v~~~ 191 (455)
T TIGR00892 114 AGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG-WRGSFLILGGLLLHCCVCGA 191 (455)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHH
Confidence 5799999998766666678889886 789999999999999998888877766666566 79999887655544333332
Q ss_pred h-ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhH
Q 011277 227 F-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGI 305 (489)
Q Consensus 227 ~-~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (489)
+ .++.+.. .+.+.++ + ++.......++ .......++..+....+.++++.++......++.....
T Consensus 192 ~~~~~~~~~--~~~~~~~-~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 257 (455)
T TIGR00892 192 LMRPVGPSQ--RVSKSKS-K---EGLPPDGSTKK----LSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGF---- 257 (455)
T ss_pred HhCCCCccc--ccccccc-c---ccCCCCCcccc----ccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHc----
Confidence 2 2322110 0000000 0 00000000000 00000000000000113455555554433322222211
Q ss_pred HHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhc--CCchhHHHhhHHHHHHHHHHHHHhhccCCCch
Q 011277 306 NAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFFSMAVSMAIQVAASSSYIPGSA 380 (489)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 380 (489)
.....+.+...++.+.+. +......+++.+++.++.+++.||. ++|+...........+...+..... ..
T Consensus 258 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----~~- 332 (455)
T TIGR00892 258 FAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA----GD- 332 (455)
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh----ch-
Confidence 111223333334445443 3455566777888888999999974 3333332222111111111111111 11
Q ss_pred hhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhHHHHHHH
Q 011277 381 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFC 459 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~ 459 (489)
.+..+...++++++++ ...+....+..|.+|++.+++++|+.+....++.+++|.+.+.+.+..+ +...|.+.+++.
T Consensus 333 -~~~~~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~ 410 (455)
T TIGR00892 333 -YTGLVIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIV 410 (455)
T ss_pred -HHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHH
Confidence 1111122223333322 2234455677899999999999999999999999999998888888764 666777766665
Q ss_pred HHHHH
Q 011277 460 LMAVA 464 (489)
Q Consensus 460 ~~~~~ 464 (489)
+++.+
T Consensus 411 li~~~ 415 (455)
T TIGR00892 411 VSAGL 415 (455)
T ss_pred HHHHH
Confidence 55544
No 62
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.95 E-value=3.6e-25 Score=223.87 Aligned_cols=370 Identities=16% Similarity=0.153 Sum_probs=235.0
Q ss_pred HHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc-----hhhHH-HHHhHHHHH
Q 011277 56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRA-FQLCALPMI 129 (489)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-----GRr~~-~~~~~~~~~ 129 (489)
..+..+..|......+..+|...++.|.+.++ .+.. +.....+ ++.+++|+++||+ |||+. +..+.++.+
T Consensus 17 ~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~--ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~ 92 (491)
T PRK11010 17 LLILGFASGLPLALTSGTLQAWMTVENIDLKT--IGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL 92 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH--HHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence 33444566667777788889888888876543 3333 3333343 6889999999999 99986 557777777
Q ss_pred HHHHHHhhc---chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc-CCc
Q 011277 130 IGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-IAG 205 (489)
Q Consensus 130 i~~~l~~~~---~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~-~~~ 205 (489)
++..+.++. .+++.+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+ ..|
T Consensus 93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G 172 (491)
T PRK11010 93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG 172 (491)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 777776664 4678888999999999988888899999999999999999999999999998888888777666 345
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhcc
Q 011277 206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR 285 (489)
Q Consensus 206 ~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (489)
||..|++.++..++..+..++.||+++. +++.++.++ ....++++.++++
T Consensus 173 -Wr~~f~i~a~l~ll~~l~~~~~~e~~~~---~~~~~~~~~--------------------------~~~~~l~~~~~~~ 222 (491)
T PRK11010 173 -WQGMYWLMAALLIPCIIATLLAPEPTDT---IPVPKTLEQ--------------------------AVVAPLRDFFGRN 222 (491)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCccc---cccccchhh--------------------------hHHHHHHHHHcCc
Confidence 7999998766655555555567886531 000000000 0001233444444
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHH-HHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHH
Q 011277 286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LAN-VFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM 361 (489)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~ 361 (489)
..+.......++...... ...+..+...+..|.+.. ... ....++.++|.+++|+++||+|+|+.+..+....
T Consensus 223 ~~~~~ll~~~l~~~~~~~---~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~ 299 (491)
T PRK11010 223 NAWLILLLIVLYKLGDAF---AMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQ 299 (491)
T ss_pred CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444333222222211111 111122222334555543 333 2334678899999999999999988776555444
Q ss_pred HHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011277 362 AVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR 441 (489)
Q Consensus 362 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 441 (489)
++........... .... +.......+....++.+.+ ....+..++.|++.+++.+|+.+++..++..+.+.+.+.
T Consensus 300 ~l~~l~~~~l~~~--~~~~--~~l~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~ 374 (491)
T PRK11010 300 GVSNAGYWLLSIT--DKNL--YSMGAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGW 374 (491)
T ss_pred HHHHHHHHHHHhc--cccH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433322211111 1111 1111111221112222222 234567788899999999999999999998888888888
Q ss_pred HHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277 442 LLEQLGPQLLYSIFGTFCLMAVAFVK 467 (489)
Q Consensus 442 l~~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
+.+..|+...|.+.+++++.+.+...
T Consensus 375 l~~~~G~~~~f~~~~~~~l~~l~~~~ 400 (491)
T PRK11010 375 FVEAHGWPTFYLFSVAAAVPGLLLLL 400 (491)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 88988988888777777777655554
No 63
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.95 E-value=2.8e-25 Score=218.50 Aligned_cols=325 Identities=17% Similarity=0.255 Sum_probs=211.1
Q ss_pred cceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHH
Q 011277 66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML 145 (489)
Q Consensus 66 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~ 145 (489)
..+...+.+|.+.+++|.+.+ +.++..+.+.++..+++++.|+++||+|||+++..+.++.+++..++..+++++.+.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAG--SVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLI 83 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 344567889999999998644 568899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH-HH
Q 011277 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC-LA 224 (489)
Q Consensus 146 ~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~-~~ 224 (489)
+.|+++|++.+...+....++.|++|+++|++..++......+|..+++.++..+.+..+ ||+.|++..+..++.. +.
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888999999999999999999999999999999988877766556 6999887655444433 33
Q ss_pred hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhh
Q 011277 225 MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSG 304 (489)
Q Consensus 225 ~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (489)
.++.||+++- +++ ++ .+.++ ...++++.+++++.........+. +..
T Consensus 163 ~~~~~~~~~~---~~~-~~-----------~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 209 (377)
T PRK11102 163 FFFIPETLPK---ERR-QP-----------FHLRT--------------TIRNFASLFRHKRVLGYMLASGFS----FAG 209 (377)
T ss_pred HHhCCccCcc---ccc-CC-----------CChHH--------------HHHHHHHHHcChHHHHHHHHHHHH----HHH
Confidence 4556765320 000 00 00000 001223344444433322221111 111
Q ss_pred HHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCch
Q 011277 305 INAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA 380 (489)
Q Consensus 305 ~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 380 (489)
......+.+..+ +..+.+ .+.......++..++.++.+++.||+|||+.+..+.....+........... ...
T Consensus 210 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~- 286 (377)
T PRK11102 210 MFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL--DLG- 286 (377)
T ss_pred HHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH--hhh-
Confidence 111111222222 223433 3455666778888999999999999999998877765544433322221110 011
Q ss_pred hhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHH
Q 011277 381 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVIN 432 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 432 (489)
.+........+...... ..+....+..|..| +.|+++.++.+......+
T Consensus 287 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g 335 (377)
T PRK11102 287 -FWALVVGVAAFVGCVSM-ISSNAMAVILDEFP-HMAGTASSLAGTLRFGIG 335 (377)
T ss_pred -HHHHHHHHHHHHHHHHH-hhHHHHHHHhcccc-ccchHHHHHHHHHHHHHH
Confidence 11111111112111111 12222335667777 889999999877655433
No 64
>PRK10133 L-fucose transporter; Provisional
Probab=99.94 E-value=6.1e-25 Score=219.09 Aligned_cols=363 Identities=12% Similarity=0.108 Sum_probs=228.2
Q ss_pred HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~ 133 (489)
+.+++..++.+.+....++.+|.+.+++|.+. .+.++..+.+.+|+.+++++.|+++||+|||+++..+.++++++++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~--~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~ 106 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTN--FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 44444556667777778888999999999864 4568999999999999999999999999999999999999999998
Q ss_pred HH---hhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc--c------
Q 011277 134 IS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK--E------ 202 (489)
Q Consensus 134 l~---~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~--~------ 202 (489)
++ +.+++++.++++|+++|+|.|...+....++.|+.|+++|++.+++.+..+.+|..++++++..+. .
T Consensus 107 l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~ 186 (438)
T PRK10133 107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQ 186 (438)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch
Confidence 75 568999999999999999999999999999999888887777888999998999888888765322 0
Q ss_pred ----------CCch-------hHHHHHHH-HHHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHH
Q 011277 203 ----------IAGW-------WRICFWVS-IVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE 263 (489)
Q Consensus 203 ----------~~~~-------wr~~f~~~-~i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (489)
..+| ||++|+.. .+..++..+. ....||.+. + +.++
T Consensus 187 ~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~-~~~~-------------------- 241 (438)
T PRK10133 187 DVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----D-NHSD-------------------- 241 (438)
T ss_pred hhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----c-cccc--------------------
Confidence 0121 56666532 2222222222 222343210 0 0000
Q ss_pred HHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHH-HH-hcCCCc---chHHHHHHHHHHHHH
Q 011277 264 LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV-FK-SAGLSS---GLANVFVGIANLLGS 338 (489)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~---~~~~~~~~i~~~~g~ 338 (489)
++......+.+++++++.++......+++...... ...|.+.. .+ ..+.+. +.......++..+|.
T Consensus 242 -----~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~ 312 (438)
T PRK10133 242 -----AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTA----CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGR 312 (438)
T ss_pred -----ccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00000011233455566655443333232221111 11122222 22 345543 456677888999999
Q ss_pred HHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhh
Q 011277 339 VVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRA 418 (489)
Q Consensus 339 ~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 418 (489)
++++++.||+|+|+++..+.....+.+.+.... +.... +..+.+.+++.+. ..|.......|.+|+ ..+
T Consensus 313 ~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~l~glg~~~-i~P~~~s~a~~~~~~-~~~ 381 (438)
T PRK10133 313 FTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----GGHVG----LIALTLCSAFMSI-QYPTIFSLGIKNLGQ-DTK 381 (438)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----CChHH----HHHHHHHHHHHHH-HHHHHHHHHHcccch-hhc
Confidence 999999999999998877655544433322211 11111 1112222222222 234555567777764 466
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHH
Q 011277 419 KAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVA 464 (489)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~ 464 (489)
++.++.. +..+++.++|.+.+.+.+..| ....|.+...+.+....
T Consensus 382 ~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred cchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 7777765 455677888888787777776 45566544444433333
No 65
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.94 E-value=1.8e-25 Score=218.93 Aligned_cols=337 Identities=17% Similarity=0.155 Sum_probs=204.6
Q ss_pred ccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc-hHH
Q 011277 65 YHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR-NLI 142 (489)
Q Consensus 65 ~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~-~~~ 142 (489)
.+.....+.+|. +.+++|++.+ +.+++.+.+.+++.+++++.|+++||+|||+.+..+.++..++.+++++++ +++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (366)
T TIGR00886 15 SVWFAFSPLAVQMIKDDLGLSTA--QLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYS 92 (366)
T ss_pred HHHHHhHHhhhHHHHHHhCCCHH--HhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 333446667785 8899998744 568999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc----------CCchhHHHHH
Q 011277 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE----------IAGWWRICFW 212 (489)
Q Consensus 143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~----------~~~~wr~~f~ 212 (489)
.+++.|+++|++.+. ......+++|++|+++|+++.+++.....+|..+++.++..+.. ..+ ||+.|+
T Consensus 93 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~-w~~~~~ 170 (366)
T TIGR00886 93 VLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLA-WGWAFV 170 (366)
T ss_pred HHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccc-ccchhH
Confidence 999999999998654 45567889999999999999999886666666555555433221 224 798884
Q ss_pred H--HHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011277 213 V--SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV 290 (489)
Q Consensus 213 ~--~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (489)
+ ..+..+...+...+.+|+|+. +.++.+...++ .. ...++.......+.+++++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T TIGR00886 171 IVPAGILLLPALLIFFVGADTPPG-----KPATGKLSFKG----AR-----------WSVGTGALGDQLKVFRDRHTWIL 230 (366)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcc-----cccchhccccc----cc-----------ccccchhHHHHHHHHhccchhhH
Confidence 3 233333333444556776531 11110000000 00 00000001123445555555444
Q ss_pred HHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHH
Q 011277 291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA 370 (489)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~ 370 (489)
.....+............+.|..+.++......+.......+..+++.++++++.||+|||+....+......+..+...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 310 (366)
T TIGR00886 231 ALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVL 310 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHh
Confidence 33322222111111112222222222211222344555666778889999999999999988776665544444333322
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHH
Q 011277 371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVI 431 (489)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~ 431 (489)
... .. ......+..........+.+.+ ..+...+|+.| ++|++++|+.+++++++
T Consensus 311 ~~~---~~-~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 311 GLV---SP-LSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred cCC---Cc-chHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 111 10 0122222222333333343333 34456788887 79999999998887654
No 66
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.94 E-value=1.1e-24 Score=215.39 Aligned_cols=339 Identities=16% Similarity=0.161 Sum_probs=214.6
Q ss_pred HHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHh
Q 011277 57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA 136 (489)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~ 136 (489)
.+.........+...+.+|.+.+++|.+.+ +.++..+.+.+++.++++++|+++||+|||+++..+.++..++.+++.
T Consensus 14 ~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~ 91 (394)
T PRK11652 14 VLLVAVGQMAQTIYVPAIADMARDLNVREG--AVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVAL 91 (394)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 333334444455667788999999998754 568899999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277 137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV 216 (489)
Q Consensus 137 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i 216 (489)
.+++++.+++.|+++|++.+...+....+..|.+++++|+++.+++..+..+|...++.++..+.+..+ ||+.|++..+
T Consensus 92 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~f~~~~~ 170 (394)
T PRK11652 92 FAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WRACYLFLLL 170 (394)
T ss_pred HHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHH
Confidence 999999999999999999888777777888999999999999999999999999889888877766666 6999987655
Q ss_pred HHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011277 217 PAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST 295 (489)
Q Consensus 217 ~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (489)
..++. .+..++.||+++. +++.++ . ...+++.++++.++.......
T Consensus 171 ~~~~~~~~~~~~~~~~~~~---~~~~~~----~--------------------------~~~~~~~~~~~~~~~~~~~~~ 217 (394)
T PRK11652 171 LGAGVTFSMARWMPETRPA---DARRTR----V--------------------------LASYRTLLSNRRFNCYLLMLI 217 (394)
T ss_pred HHHHHHHHHHHhCCccCcc---ccchhH----H--------------------------HHHHHHHHcChHHHHHHHHHH
Confidence 44433 3334566776421 000000 0 011223333444443322221
Q ss_pred HHHHHhhhhHHHHHHhHHHHHHh-cCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHH
Q 011277 296 LFALQQLSGINAIFYFSSSVFKS-AGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA 371 (489)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~ 371 (489)
.... .......+.+..+++ .+.+. ++......++.+++..+.+++.||++++... ......+........
T Consensus 218 ~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~ 291 (394)
T PRK11652 218 GTLA----GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIP 291 (394)
T ss_pred HHHH----HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 1111 111111111222222 34433 3444555677777888888888888733222 222222222221111
Q ss_pred hhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 372 SSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL 442 (489)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l 442 (489)
.... .. ..+........+..+.+. ..|....+..|.+| +.++++.++.+....++..+++.+...+
T Consensus 292 ~~~~-~~--~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 292 GWFG-VM--NVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred HHhc-cc--cHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1100 01 111112222222232222 23444556678887 6889999999998888888888766544
No 67
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.93 E-value=3e-24 Score=240.64 Aligned_cols=333 Identities=12% Similarity=0.005 Sum_probs=212.0
Q ss_pred hhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH---HhhcchHHHHHHHHHHH
Q 011277 75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGMLLGRFVV 151 (489)
Q Consensus 75 ~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l---~~~~~~~~~l~~~R~l~ 151 (489)
+.+..+++.+.+....+++.+++.+++.++++++|+++||+|||++++++.++..++.++ +..+.+++.++++|+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 113 (1146)
T PRK08633 34 NTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLL 113 (1146)
T ss_pred HHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 445556666555555688999999999999999999999999999999988766555544 34457899999999999
Q ss_pred hhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC--------CchhHHHHHHH-HHHHHHHH
Q 011277 152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI--------AGWWRICFWVS-IVPAAILC 222 (489)
Q Consensus 152 G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~--------~~~wr~~f~~~-~i~~~~~~ 222 (489)
|++.+...+....++.|++|+++|+++++++..+..+|.++|++++..+.+. .+||++.+.+. ....++.+
T Consensus 114 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (1146)
T PRK08633 114 GAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGL 193 (1146)
T ss_pred HHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998776654 23445444433 23333333
Q ss_pred HHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277 223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL 302 (489)
Q Consensus 223 ~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (489)
+..+.+||+|.....+. ++ .+ ....+ + ....++.+++++.++...+...+......
T Consensus 194 ~~~~~~~~~~~~~~~~~--~~-~~-------~~~~~----~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 249 (1146)
T PRK08633 194 IFAYRLPKVPAAAPEVF--DK-KK-------YLFPK----L----------LWRNLKLLRSDRVLWLAIIGLSYFWFISQ 249 (1146)
T ss_pred HHHhcCcCCCCCCcccc--cc-cc-------cccHH----H----------HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 44556788764211000 00 00 00000 0 00123344555555544433333222211
Q ss_pred hhHHHHHHhHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchh
Q 011277 303 SGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS 381 (489)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 381 (489)
......+.|....++.... ..++.....+++.+++.++.+++.||+++++.+.++.++++++.+++.... .
T Consensus 250 ~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 321 (1146)
T PRK08633 250 LAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP--------S 321 (1146)
T ss_pred HHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh--------h
Confidence 1111222222222222222 235566777788899999999999999998877776665555544433221 1
Q ss_pred hHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 011277 382 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFL 440 (489)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 440 (489)
.+..+...++++++.+.. .+....+..|..|++.|++++|+.+.+.++++.+++.+..
T Consensus 322 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~ 379 (1146)
T PRK08633 322 LASVLVLFFLFGFSAGLF-IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTT 379 (1146)
T ss_pred HHHHHHHHHHHHHHHHHh-hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111222222233332222 2334567789999999999999999999888866665543
No 68
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.93 E-value=6.9e-24 Score=198.12 Aligned_cols=356 Identities=18% Similarity=0.200 Sum_probs=234.4
Q ss_pred eeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHH---HHH
Q 011277 69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLI---GML 145 (489)
Q Consensus 69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~---~l~ 145 (489)
..++..+.+.+|+|+|.+ |.++++++-.+..++.-++.|++.||||.|++...++++..+-++..+++.+.+ +++
T Consensus 32 l~s~l~~~i~~~~~LS~~--q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll 109 (417)
T COG2223 32 LFSPLGVFIKSDFGLSEG--QKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLL 109 (417)
T ss_pred HHHHHHhhhccccCCCHH--HHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHH
Confidence 344455667789888754 568999999998899999999999999999999999999999988888876555 999
Q ss_pred HHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc--hhHHHHHHHHHHHHHHHH
Q 011277 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG--WWRICFWVSIVPAAILCL 223 (489)
Q Consensus 146 ~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~--~wr~~f~~~~i~~~~~~~ 223 (489)
+.+.+.|++ |+..++...++++++||+++|.+.+++. ..++|..+...++..+....+ +||..-.+-.++.++..+
T Consensus 110 ~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v 187 (417)
T COG2223 110 VIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAV 187 (417)
T ss_pred HHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999996 5567788889999999999999999998 666665544444444443445 478887765555444333
Q ss_pred H-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277 224 A-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL 302 (489)
Q Consensus 224 ~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (489)
. ++...+.|......++ . ....++...++++.|.+.+.... .+
T Consensus 188 ~~~~~~~d~p~~r~~~~~-~-------------------------------~~~~~~~v~~~~~~W~lsllY~~----tF 231 (417)
T COG2223 188 LAWLGMNDVPEHRASVKP-Q-------------------------------LPAQLKAVFSNKDTWLLSLLYFA----TF 231 (417)
T ss_pred HHHHHhCCChhhhccccc-c-------------------------------chhHHHHHhcCcchHHHHHHHHH----HH
Confidence 3 3333333321000000 0 00123344445555554433322 22
Q ss_pred hhHHHHHHhHH----HHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCC
Q 011277 303 SGINAIFYFSS----SVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG 378 (489)
Q Consensus 303 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 378 (489)
.++..+..+.+ +.|...+.+.+...........+...++|+++||+|.+|+....+..+.++..+.....+....
T Consensus 232 G~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~- 310 (417)
T COG2223 232 GGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH- 310 (417)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccccc-
Confidence 22223333333 3333333334444444555566667789999999999999988888888877765543322111
Q ss_pred chhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhHHHHH
Q 011277 379 SASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGT 457 (489)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~ 457 (489)
.......+...+...+..++|-+.+. -+++.++| +.-+...|++..++.++++..|..+...++..| +...|.++..
T Consensus 311 ~~~~~~~~~~~l~l~~~~G~GnGsvf-k~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~ 388 (417)
T COG2223 311 GGSFVVFVAVFLALFVFAGLGNGSVF-KMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLA 388 (417)
T ss_pred CcchHHHHHHHHHHHHHhccCcchhe-eechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHH
Confidence 11222222333333444555555443 46778887 578889999999999999999999988888877 4566777777
Q ss_pred HHHHHHHHHH
Q 011277 458 FCLMAVAFVK 467 (489)
Q Consensus 458 ~~~~~~~~~~ 467 (489)
+++++.++.+
T Consensus 389 ~~~~a~v~~~ 398 (417)
T COG2223 389 FYLVALVLTW 398 (417)
T ss_pred HHHHHHHHHH
Confidence 7766666443
No 69
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.93 E-value=7.3e-24 Score=206.58 Aligned_cols=329 Identities=16% Similarity=0.169 Sum_probs=214.1
Q ss_pred eeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHH
Q 011277 68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG 147 (489)
Q Consensus 68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~ 147 (489)
....+.+|.+.+|+|.+.+ +.++..+.+.+++.+++++.|+++||+|||+++..+.++..++.+++ .+++++.+++.
T Consensus 17 ~~~~~~lp~l~~~~~~s~~--~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 93 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFS--VAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAG 93 (355)
T ss_pred ccCcccHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence 4567889999999998754 56899999999999999999999999999999999999988888877 77899999999
Q ss_pred HHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCch-hHHHHHHHHHHHHHHHHHhh
Q 011277 148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAILCLAMV 226 (489)
Q Consensus 148 R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~-wr~~f~~~~i~~~~~~~~~~ 226 (489)
|++.|++.+...+....++.|++| ++|+++.+++..+..+|..+++.++..+.+..++ ||+.|....+..++. ...
T Consensus 94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~--~~~ 170 (355)
T TIGR00896 94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA--LLA 170 (355)
T ss_pred HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HHH
Confidence 999999999887778888889886 5899999999999999988888777666554433 798887644332222 222
Q ss_pred hccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHH
Q 011277 227 FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGIN 306 (489)
Q Consensus 227 ~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (489)
+.||+++ ++++ + ++ ......++.++++..+.......+.... ..
T Consensus 171 ~~~~~~~------~~~~----------~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 214 (355)
T TIGR00896 171 WIPQVRR------RVAA----------N-------------QT---TTRLTPVRIWRSPLAWQVTVFFGLQSGL----YY 214 (355)
T ss_pred Hhhhhcc------ccCC----------C-------------CC---CCCCCCchhhcCHhHHHHHHHHHHHHHH----HH
Confidence 3344321 0000 0 00 0001122334444443322221111111 12
Q ss_pred HHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhc-CCchhHHHhhHHHHHHHHHHHHHhhccCCCchhh
Q 011277 307 AIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL 382 (489)
Q Consensus 307 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 382 (489)
....+.+..+++.+.+. +.......++.+++.++.|++.||+ +||+.+..+.....++......... .. .
T Consensus 215 ~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~ 288 (355)
T TIGR00896 215 SLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM-----HG-L 288 (355)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh-----hH-H
Confidence 22234444445455543 4556667788999999999999999 4565655555555554443332211 11 1
Q ss_pred HHHHHHHHHHHHHHhcCcccccccccc-ccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011277 383 YLSVGGMLMFVLTFALGAGPVPSLLLP-EIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP 448 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 448 (489)
.. ...+++++.+ ...|....... +..+++.+++..++.+.++++++.++|.+.+.+.+..|.
T Consensus 289 ~~---~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 289 WA---WALVLGLGQG-GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HH---HHHHHHHhhh-hHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 1112222221 11233222333 444567789999999999999999999998888887663
No 70
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.93 E-value=9.5e-25 Score=215.67 Aligned_cols=281 Identities=21% Similarity=0.245 Sum_probs=197.5
Q ss_pred HHHHHhhhhcc-ceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH
Q 011277 56 ATLSSFLFGYH-LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI 134 (489)
Q Consensus 56 ~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l 134 (489)
+++..+....+ .++.+..+..+.+|.+...+ +.+.+.+++.+||++|.++++.|.||+.-.+.+..+.+++++.+++
T Consensus 50 ~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~--~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~ 127 (495)
T KOG2533|consen 50 LCYLYFHAYLDKSSIVNASLSGLKEDLKLVGN--QLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFL 127 (495)
T ss_pred HHHHHHHHhcchhcchhHHHcCCccccchhhh--hhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 34433443444 34556666666788887655 4578999999999999999999999999999999999999999988
Q ss_pred HhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccc------ccCCchhH
Q 011277 135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV------KEIAGWWR 208 (489)
Q Consensus 135 ~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l------~~~~~~wr 208 (489)
.+..+|++.+++.|++.|+..+..+|....+++-|+.++|||+.++++..+..+|.+.|.+++..+ ....| ||
T Consensus 128 ~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g-W~ 206 (495)
T KOG2533|consen 128 TAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG-WR 206 (495)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC-ce
Confidence 888999999999999999999999999999999999999999999999999999988888887653 22344 79
Q ss_pred HHHHHHHHHHHHHH-HHhhhccCChH--HHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhcc
Q 011277 209 ICFWVSIVPAAILC-LAMVFCAESPH--WLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR 285 (489)
Q Consensus 209 ~~f~~~~i~~~~~~-~~~~~~~Esp~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (489)
|.|++.++..+... +.++++|+.|. +... ++|.+-..++.+ +.......++.+...+.+.++++
T Consensus 207 ~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~---~~ek~~~~~~~~----------~~~~~~~~~~~~~~~~~~a~~dp 273 (495)
T KOG2533|consen 207 WLFIIEGVITLVLGIVVFFFLPDNPSKAWFLT---DEEKELVVERLR----------ESPSGGIENKFKWKGFKEALKDP 273 (495)
T ss_pred eehhHHHHHHHHHHheEEEEecCChhhccccc---hHHHHHHHHHHH----------hccCCCcccccCHHHHHHHHhch
Confidence 99998655555444 45677899986 2111 111110111110 00011111113445567777777
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cCC---CcchHHHHHHHHHHHHHHHHHHHhhh----cCCchhHHH
Q 011277 286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGL---SSGLANVFVGIANLLGSVVAMVLMDK----LGRKALLQW 356 (489)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~i~~~~g~~~~g~l~dr----~grr~~~~~ 356 (489)
..+...+..++.... .+...++.+.+.+. .+. +++...++..++.+++.+++|+++|| ..+|.....
T Consensus 274 ~vw~~~l~~~~~~lv----~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~ 348 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLV----NYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIV 348 (495)
T ss_pred hHHHHHHHHHHHhhc----cccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 666655443333222 23345566655555 223 35677889999999999999999999 445544433
No 71
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.93 E-value=1.7e-23 Score=206.87 Aligned_cols=356 Identities=14% Similarity=0.064 Sum_probs=221.4
Q ss_pred HHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh
Q 011277 59 SSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT 137 (489)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~ 137 (489)
.+++.......+.+.++. +.+++|.+ ..+.|+..+...++..+.+++.|+++||+|||+++..+.++..++.++++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~g~s--~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~ 95 (400)
T PRK11646 18 DNMLVVLGFFVVFPLISIRFVDQLGWA--AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI 95 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555553 46777775 446788999888898899999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHH
Q 011277 138 TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP 217 (489)
Q Consensus 138 ~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~ 217 (489)
+++++.+.+.|+++|++.+...+....++.|++|+++|+++.++......+|..+|+.++..+. ..+ ||+.|++..+.
T Consensus 96 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~~ 173 (400)
T PRK11646 96 AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAVL 173 (400)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHHH
Confidence 9999999999999999988877888888999999999999999999999999999999887776 345 79999876554
Q ss_pred HHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHH
Q 011277 218 AAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296 (489)
Q Consensus 218 ~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (489)
.++..+ ..++.||.+. +.+.++ ....+++.++++.+.........
T Consensus 174 ~~~~~i~~~~~~~~~~~----~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 219 (400)
T PRK11646 174 FVLAAAFNAWLLPAYKL----STVRTP------------------------------VREGMTRVLRDKRFVTYVLTLTG 219 (400)
T ss_pred HHHHHHHHHHhCCcccc----cccchh------------------------------hHHHHHHHHcCchHHHHHHHHHH
Confidence 444332 2334454210 000000 00112334444444332222211
Q ss_pred HHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHh-hhcCCchhHHHhhHHHHHHHHHHHHHh
Q 011277 297 FALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLM-DKLGRKALLQWSFFSMAVSMAIQVAAS 372 (489)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~-dr~grr~~~~~~~~~~~i~~~~~~~~~ 372 (489)
...... ....+.|...++.+.+ .+......+++...+....+++. ||++.++.+..+....+++..++....
T Consensus 220 ~~~~~~----~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (400)
T PRK11646 220 YYMLAV----QVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS 295 (400)
T ss_pred HHHHHH----HHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 111111 1111223322332222 23333444444444444445555 456656555555555554443332211
Q ss_pred hccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C
Q 011277 373 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG----P 448 (489)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g----~ 448 (489)
. . +..+....++..+... ..|....+..|..|++.|++++|+.+....++..++|.+.+.+.+..+ .
T Consensus 296 -----~-~--~~~~~~~~l~~~g~~~-~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~ 366 (400)
T PRK11646 296 -----N-L--QQLFTLICLFYIGSII-AEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQP 366 (400)
T ss_pred -----h-H--HHHHHHHHHHHHHHHH-HHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCc
Confidence 1 1 1111112222222221 234455678899999999999999999999999999998888877642 2
Q ss_pred chhhHHHHHHHHHHHHH
Q 011277 449 QLLYSIFGTFCLMAVAF 465 (489)
Q Consensus 449 ~~~~~~~~~~~~~~~~~ 465 (489)
...+...+.++++..+.
T Consensus 367 ~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 367 ELPWMMLGIIGLITLLA 383 (400)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 72
>PRK10054 putative transporter; Provisional
Probab=99.93 E-value=6.9e-24 Score=209.22 Aligned_cols=369 Identities=13% Similarity=0.086 Sum_probs=237.3
Q ss_pred HHHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHh
Q 011277 58 LSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA 136 (489)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~ 136 (489)
...++.....+...+.+|. +.+++|++. .+.|+..+.+.++..+++++.|+++||+|||+++..+.++..++.++.+
T Consensus 14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~--~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~ 91 (395)
T PRK10054 14 ASSLLLTIGRGATLPFMTIYLSRQYSLSV--DLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIP 91 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH
Confidence 3444555555555666654 456778764 4568999999999999999999999999999999999999999998999
Q ss_pred hcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277 137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV 216 (489)
Q Consensus 137 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i 216 (489)
++++++.++++|++.|.+.+...+....+..|..|+++|++..++......+|..++++++..+.+ .+ ||..|++..+
T Consensus 92 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~~~~ 169 (395)
T PRK10054 92 LVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWLAAI 169 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHHHHH
Confidence 999999999999999988777777788889999999999999999999999999999888877654 45 6888887655
Q ss_pred HHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011277 217 PAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST 295 (489)
Q Consensus 217 ~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (489)
..++..+ ..++.||+++ +++ ++.++ ..+.++.+++++++.......
T Consensus 170 ~~~i~~i~~~~~~~~~~~----~~~-~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~ 216 (395)
T PRK10054 170 CSAFPLVFIQIWVQRSEK----AIA-TETGS----------------------------VWSPSVLLQDKALLWFTCSGF 216 (395)
T ss_pred HHHHHHHHHHHHHhcccc----ccc-cchhh----------------------------hhhhhhhccCceehHHHHHHH
Confidence 5444433 3333454421 000 00000 001123445555554443333
Q ss_pred HHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHh
Q 011277 296 LFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS 372 (489)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~ 372 (489)
+..............|.+.. ...+.+. +.......+.........+++.||.++|+.+..+.....++........
T Consensus 217 l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 295 (395)
T PRK10054 217 LASFVSGAFASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG 295 (395)
T ss_pred HHHHHHHHhhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc
Confidence 22221111111112222221 1122222 2233333344445556778999999999988777655555544332211
Q ss_pred hccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh
Q 011277 373 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLY 452 (489)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~ 452 (489)
+.. +........+..+.. ...|....+..+..|++.|++..+..+ ..+++..++|.+.+.++|..|+...|
T Consensus 296 -----~~~--~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~ 366 (395)
T PRK10054 296 -----NSL--LLWGMSAAVFTVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLF 366 (395)
T ss_pred -----hHH--HHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHH
Confidence 111 111111222222221 123455567888899999999988754 67789999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHhhcccC
Q 011277 453 SIFGTFCLMAVAFVKRNVVET 473 (489)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~et 473 (489)
.+++++..++.++..+...|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~ 387 (395)
T PRK10054 367 VILALAIVAAWLLMLKGMRAR 387 (395)
T ss_pred HHHHHHHHHHHHHHHhccccC
Confidence 887777766666665545543
No 73
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.93 E-value=2.1e-23 Score=206.29 Aligned_cols=354 Identities=14% Similarity=0.119 Sum_probs=230.4
Q ss_pred HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~ 133 (489)
++++...+..|+..+..++.+|.+++++|.+. .+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++..
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~--~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~ 83 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTA--FQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF 83 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 45566667778888888899999999999864 4678999999999999999999999999999999999999999988
Q ss_pred HHhh---cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCC------
Q 011277 134 ISAT---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA------ 204 (489)
Q Consensus 134 l~~~---~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~------ 204 (489)
+... .++++.+++.|++.|+|.|...+....++.+..|+++|++..++.+....+|..+++.++..+....
T Consensus 84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~ 163 (410)
T TIGR00885 84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQ 163 (410)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence 8543 4689999999999999999999999999999999999999999999999999888887765442110
Q ss_pred -------------------chhHHHHHHHHHHHHHHHHHhhh--ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHH
Q 011277 205 -------------------GWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE 263 (489)
Q Consensus 205 -------------------~~wr~~f~~~~i~~~~~~~~~~~--~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (489)
..||++|++.++..++..+...+ .||.++ + ++ ++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~------~-~~-~~----------------- 218 (410)
T TIGR00885 164 DVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH------S-DA-KQ----------------- 218 (410)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------c-cc-cc-----------------
Confidence 12799998755544443333322 333210 0 00 00
Q ss_pred HHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhc--CCCcch---HHHHHHHHHHHHH
Q 011277 264 LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA--GLSSGL---ANVFVGIANLLGS 338 (489)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~i~~~~g~ 338 (489)
.......++.+++++++......+++...... ...+.+...... +.+.+. ..........+|.
T Consensus 219 --------~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~----~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR 286 (410)
T TIGR00885 219 --------ISFSASLSRLARIRHYREGVIAQFFYVGVQIM----CWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISR 286 (410)
T ss_pred --------ccchhhHHHHHhChhHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00001123345555555544444443332221 112222222222 222221 1222335667899
Q ss_pred HHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhh
Q 011277 339 VVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRA 418 (489)
Q Consensus 339 ~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 418 (489)
++++++.||+++|+++.+......+.+.+.... ++....+. +.....+.+ ...|..+....+..+++.+.
T Consensus 287 ~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-----~~~~~~~~----l~~~glf~s-~~fp~i~sl~~~~~g~~~~~ 356 (410)
T TIGR00885 287 FIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-----GGHVGLYC----LTLCSAFMS-LMFPTIYGIALKGLGQDTKY 356 (410)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----CChHHHHH----HHHHHHHHH-HHHHHHHHHHHhhhhhhhhh
Confidence 999999999999998776655555544433321 11111111 111112222 22356666777888877766
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCchhhHHHHHH
Q 011277 419 KAMAVCMSVHWVINFFVGLLFLRLLEQL------GPQLLYSIFGTF 458 (489)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~------g~~~~~~~~~~~ 458 (489)
.+.+++..+ +++.+.|.+.+.+.|.. +....|.+...+
T Consensus 357 ~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~ 400 (410)
T TIGR00885 357 GAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC 400 (410)
T ss_pred hHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence 666666655 88999999988888843 344556544333
No 74
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.92 E-value=9.9e-24 Score=208.12 Aligned_cols=358 Identities=17% Similarity=0.206 Sum_probs=239.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhhcccccc
Q 011277 83 FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPT 160 (489)
Q Consensus 83 ~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~--~~~~l~~~R~l~G~g~g~~~~ 160 (489)
++.++.+.+++.+.+++|+.+++++.|+++||+|-|+++..+.++.++++++...+. +++.+++.|++||++.|..++
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~p 147 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFP 147 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHh
Confidence 334456779999999999999999999999999999999999999999999987765 445678999999999999999
Q ss_pred cccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC-CchhHHHHHHHHHHHHHHHHHh-hhccCChHHHHhc
Q 011277 161 VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWWRICFWVSIVPAAILCLAM-VFCAESPHWLYKK 238 (489)
Q Consensus 161 ~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~~wr~~f~~~~i~~~~~~~~~-~~~~Esp~~l~~~ 238 (489)
....+.+.|.|++||++..++...+..+|.+++..+++.+.+. .| |+.+|++.++.+++..+++ ++..|+|.- +
T Consensus 148 a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P~~---h 223 (466)
T KOG2532|consen 148 AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSPSK---H 223 (466)
T ss_pred hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCccc---C
Confidence 9999999999999999999999999999988888777777666 56 7999999777777665554 455666642 1
Q ss_pred CCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh
Q 011277 239 GRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS 318 (489)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (489)
.+..+ ++++++.+.. ..+..++....++++++++++.+..+++.+.............+.|..++++.
T Consensus 224 ~~is~--~El~~I~~~k----------~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f 291 (466)
T KOG2532|consen 224 PNISE--KELKYIEKGK----------SEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGF 291 (466)
T ss_pred CCCCH--HHHHHHHhcc----------cccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCC
Confidence 12111 1222221110 00111111467899999999988887776665444333333333343333333
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCc--------hhH-HHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277 319 AGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK--------ALL-QWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM 389 (489)
Q Consensus 319 ~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr--------~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (489)
.-.+.|+......+...+..+++|.++||+-+| ++. .+++.+.++.++.+... +.... +..+..+
T Consensus 292 ~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~-----~~~~~-~~a~~~l 365 (466)
T KOG2532|consen 292 DVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT-----SDEHR-LLAVILL 365 (466)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec-----CCCcc-hHHHHHH
Confidence 333467777788888999999999999998663 111 12233333322222211 11111 1111111
Q ss_pred HHHHHHHhcCccccccccccccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCchhhHHHHHHHHHHHHH
Q 011277 390 LMFVLTFALGAGPVPSLLLPEIF-PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE---QLGPQLLYSIFGTFCLMAVAF 465 (489)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~ 465 (489)
.+ ..++. |.... ..+.+-.- -+++.+..+|+.+.+..+.+++.|.+.+.+.. .-.|...|.+.+++.++..++
T Consensus 366 ~~-~~~~~-g~~~~-Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~ 442 (466)
T KOG2532|consen 366 TI-AIGLS-GFNIS-GFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNII 442 (466)
T ss_pred HH-HHHHc-ccchh-hhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchh
Confidence 11 11111 11111 11222222 46899999999999999999999998877663 234667888888887777654
No 75
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.92 E-value=9.3e-23 Score=201.39 Aligned_cols=362 Identities=13% Similarity=0.137 Sum_probs=212.0
Q ss_pred HHHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHH-HHHHHHHHHHhhHhhhhhchhhHHH-HHhHHHHHHHHHH
Q 011277 58 LSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSM-CLGGAFIGSTLSGWIADGVGRRRAF-QLCALPMIIGASI 134 (489)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~-~~~g~~ig~~~~g~l~Dr~GRr~~~-~~~~~~~~i~~~l 134 (489)
+..++.+...+...+.+|. +.+|+|.+.+ +.|+..+. ...++.++++..++ +||+|||+.+ ..+.++.+++..+
T Consensus 22 ~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~--~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~ 98 (393)
T PRK15011 22 IVAFLTGIAGALQTPTLSIFLTDEVHARPA--MVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTL 98 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHH
Confidence 3356666666666676665 5678887644 46777654 45577777777777 9999999875 4556666677778
Q ss_pred HhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccc--hhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277 135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVR--GTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (489)
Q Consensus 135 ~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~R--g~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~ 212 (489)
.+++++++.+++.+.+.|...+...+....++.|+.++++| +...++.+.+..+|..+++.++..+.+..| ||..|+
T Consensus 99 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~f~ 177 (393)
T PRK15011 99 FAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVMYL 177 (393)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHHHH
Confidence 88899999876655544444445666777778887776655 345678888899999999999888876667 699998
Q ss_pred HHHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011277 213 VSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF 291 (489)
Q Consensus 213 ~~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (489)
..++..++..+ ...++||+++ + ++++ .+ . . +.. ++ ..+......
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~----~-~~~~-~~-------~------~---~~~-~~------------~~~~~~~~~ 222 (393)
T PRK15011 178 SAAVAFIVCGVMVWLFLPSMRK----E-LPLA-TG-------T------L---EAP-RR------------NRRDTLLLF 222 (393)
T ss_pred HHHHHHHHHHHHHHhhcCccCC----C-Cccc-cc-------c------c---ccc-cc------------ccccHHHHH
Confidence 76555444433 3445677642 0 0000 00 0 0 000 00 001111111
Q ss_pred HHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHH
Q 011277 292 IGSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367 (489)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~ 367 (489)
........ .......+.+..+ +..+.+. +.......+..+++.++.|+++||+|||+.+..+.....+....
T Consensus 223 ~~~~~~~~----~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~ 298 (393)
T PRK15011 223 VICTLMWG----TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAG 298 (393)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 11111111 1111112223222 3334443 33334444566778899999999999998776554433332222
Q ss_pred HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277 368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 447 (489)
.... +..... +....+..+.++... +....+..|.+|+ .|+++.++.+...+++..+++.+.+.+.+..+
T Consensus 299 ~~~~------~~~~~~--l~~~~l~~~~~g~~~-~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g 368 (393)
T PRK15011 299 MLMA------HSPAIL--LGLQLLNAIYIGILG-GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN 368 (393)
T ss_pred HHHH------hhHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111 111111 111111111111111 1223456899885 59999999998899999999999888888888
Q ss_pred CchhhHHHHHHHHHHHHHHHhhcccC
Q 011277 448 PQLLYSIFGTFCLMAVAFVKRNVVET 473 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~et 473 (489)
+...+.+.++++++..+.. ...|||
T Consensus 369 ~~~~~~~~~~~~~~~~~~~-~~~~~~ 393 (393)
T PRK15011 369 YHAVFWFALVMIIATLFCL-LRIKDV 393 (393)
T ss_pred hHHHHHHHHHHHHHHHHHH-HhhcCC
Confidence 8777766666666555444 455654
No 76
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.91 E-value=9.6e-22 Score=195.15 Aligned_cols=370 Identities=14% Similarity=0.121 Sum_probs=222.6
Q ss_pred hhhhccceeeccchh-hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchh-hHHHHHhHHHHHHHHHHHhhc
Q 011277 61 FLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPMIIGASISATT 138 (489)
Q Consensus 61 ~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GR-r~~~~~~~~~~~i~~~l~~~~ 138 (489)
+.+....++..+.++ .+.+++|++. .+.|++.+.+.++..++++++|.++||+|| |+++..+.++..++..+..+.
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~~~g~s~--~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~ 89 (418)
T TIGR00889 12 FLQWFIWGSWLVTLGSYMSKTLHFSG--AEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV 89 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444 4456677764 467999999999999999999999999965 888888888888888888899
Q ss_pred chHHHHHHHHHHHhhhcccccccccccc----c----ccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHH
Q 011277 139 RNLIGMLLGRFVVGTGMGLGPTVAALYV----T----EVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC 210 (489)
Q Consensus 139 ~~~~~l~~~R~l~G~g~g~~~~~~~~~i----~----e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~ 210 (489)
++++.+.+.|++.|++.+...+...... . |......|.+..+. +|..+++++++.+..... |+.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~~~~-~~~- 161 (418)
T TIGR00889 90 TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDIELS-NIQ- 161 (418)
T ss_pred cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcccch-hHH-
Confidence 9999999999999998766555443332 1 33333345555542 455555555544422222 454
Q ss_pred HHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011277 211 FWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV 290 (489)
Q Consensus 211 f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (489)
|++.++..++..+..+++||+|+- +++.++. .++ .......+.++++.+...
T Consensus 162 f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~~---~~~----------------------~~~~~~~~~~k~~~~~~~ 213 (418)
T TIGR00889 162 LYITAGSSALLGVFALTLPDIPVA---KSTAKMS---IKV----------------------MLGLDAFILFKNKRMAIF 213 (418)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCC---ccccccC---HHH----------------------HhhhhHHHHhcCCCeeeH
Confidence 444434444444455677887530 1110000 000 000012234455555444
Q ss_pred HHHHHHHHHHhhhhHHHHHHhHHHHHHhcCC-----------CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhH
Q 011277 291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGL-----------SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF 359 (489)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~ 359 (489)
....++...... ....+.+...++.+. ..+.......+...++.+..++++||+|||+++..+.+
T Consensus 214 ~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~ 289 (418)
T TIGR00889 214 FFFSMLLGAPLQ----ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLV 289 (418)
T ss_pred HHHHHHHHhHHH----HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 443333221111 111122222222221 12445555667788888999999999999999888877
Q ss_pred HHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHH-HHHHHHHHHHHHH
Q 011277 360 SMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCM-SVHWVINFFVGLL 438 (489)
Q Consensus 360 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~~~~~~~~~ 438 (489)
..++......... ......+..+...++.+.++.. ..+....++.|.+|++.|++++|+.+ ....+++.++|.+
T Consensus 290 ~~~v~~~l~~~~~----~~~~~~~~l~l~~~l~g~~~~~-~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l 364 (418)
T TIGR00889 290 AWALRFGFFAYGD----PEYFGYALLFLSMIVYGCAFDF-FNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYIL 364 (418)
T ss_pred HHHHHHHHHHHcC----cchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666544333211 0111111112222233333222 23444557899999999999999997 5567888999999
Q ss_pred HHHHHHHh------CCchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011277 439 FLRLLEQL------GPQLLYSIFGTFCLMAVAFVKRNVVETKGKS 477 (489)
Q Consensus 439 ~~~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 477 (489)
.+.+.+.. |+...|.+.+++.++..++..+..||++++-
T Consensus 365 ~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~ 409 (418)
T TIGR00889 365 SGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI 409 (418)
T ss_pred HHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 88888874 3567788888887778787788889887653
No 77
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.91 E-value=5.4e-22 Score=196.63 Aligned_cols=362 Identities=18% Similarity=0.117 Sum_probs=223.0
Q ss_pred hhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc-----hhhH-HHHHhHHHHHHHHHH
Q 011277 61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRR-AFQLCALPMIIGASI 134 (489)
Q Consensus 61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-----GRr~-~~~~~~~~~~i~~~l 134 (489)
+..|...+....++|.+.++.|++.++ .|++...... .+..+++|+++||+ |||+ .+..+.++.+++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~g~~~~~--ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 9 FASGLPLALTSGTLQAWMTVEGLDIQT--IGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCHHH--HHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 455666677788899999999987654 5666555554 48889999999999 8876 677878888777777
Q ss_pred Hhhc---chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC-CchhHHH
Q 011277 135 SATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWWRIC 210 (489)
Q Consensus 135 ~~~~---~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~~wr~~ 210 (489)
.++. .+++.+.+..++.++..+...+...+++.|+.|+++|+++.++...+..+|.++++.++..+.+. .+ ||..
T Consensus 85 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g-w~~~ 163 (402)
T PRK11902 85 MAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG-WGNT 163 (402)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC-HHHH
Confidence 6766 45777788888888888888888899999999999999999999999999988887776666553 35 7999
Q ss_pred HHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011277 211 FWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV 290 (489)
Q Consensus 211 f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (489)
|++.++..++..+...+.||+++. +++.++..+ + ....++++++++.++..
T Consensus 164 f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~~~----------------~----------~~~~~~~l~~~~~~~~~ 214 (402)
T PRK11902 164 YLLMAGLMLAGALTTLWAPEPEVP---ARPPRSLGE----------------A----------VVGPLRDFFSRRGAWAL 214 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccc---ccccchhHH----------------H----------HHHHHHHHHhCcCHHHH
Confidence 988655555544445567776431 100000000 0 01124456666666655
Q ss_pred HHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHH-HHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHH
Q 011277 291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA 366 (489)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~ 366 (489)
.....++........ .+..+...+..+.+.. +.....+ ++.+++.++++++.||+|+|+.+..+.....+...
T Consensus 215 l~~~~l~~~~~~~~~---~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l 291 (402)
T PRK11902 215 LLLIVLYKLGDAFAG---SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNL 291 (402)
T ss_pred HHHHHHHHhHHHHHH---HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 443333322211111 1111223344555443 2222223 45778999999999999999877665554444433
Q ss_pred HHHHHhhccCCCchhhHHHHHHHH----HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 367 IQVAASSSYIPGSASLYLSVGGML----MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL 442 (489)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l 442 (489)
........ ++.. +....... +....+. ...+....++.+.+|.+.+ +....+..++...++.+.+.+
T Consensus 292 ~~~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l 362 (402)
T PRK11902 292 GYWVLAVT--PKHL--WTMALAIGIENLCGGMGTA-AFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYL 362 (402)
T ss_pred HHHHHHhc--CCcH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 32221111 1111 11111111 1111111 1123344567777776554 444444455555555567788
Q ss_pred HHHhCCchhhHHHHHHHHHHHHHHHh
Q 011277 443 LEQLGPQLLYSIFGTFCLMAVAFVKR 468 (489)
Q Consensus 443 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
.+..|+...|.+.+.+++++.+..++
T Consensus 363 ~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 363 VEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 89999988888888777777665543
No 78
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.91 E-value=6.8e-22 Score=194.49 Aligned_cols=357 Identities=13% Similarity=0.052 Sum_probs=227.8
Q ss_pred HHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHH----HHhHHHHHHHHH
Q 011277 58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF----QLCALPMIIGAS 133 (489)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~----~~~~~~~~i~~~ 133 (489)
+..+......+...|.+|.+.+|+|++ ..+.|++.+.+.++..++++++|+++||+|||... ..+..++.+ .
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s--~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~ 86 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLG--EEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence 334444444567788899999999886 44668999999999999999999999999985433 222222222 2
Q ss_pred HHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (489)
Q Consensus 134 l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~ 213 (489)
.+..+++++.+++.|.++|.+.+...+....+..|+ +++|++..+......++|..+++++++.+.+..| ||..|++
T Consensus 87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f~~ 163 (382)
T TIGR00902 87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNILAI 163 (382)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHH
Confidence 445678999999999999999888888887777654 5778999999999999999999998888877777 6988887
Q ss_pred HHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHH
Q 011277 214 SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG 293 (489)
Q Consensus 214 ~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (489)
......+. +..+..+|+++ +++.++. ++.....+..+.+++++++.....
T Consensus 164 ~~~~~~~~-~~~~~~~~~~~----~~~~~~~-------------------------~~~~~~~~~~~~l~~~~~~~~l~~ 213 (382)
T TIGR00902 164 LTAGLAFM-LIGFLIKPTIP----PKDAIPE-------------------------DESQGDSAFIALLKNPMNLRFLAA 213 (382)
T ss_pred HHHHHHHH-HHHHHcCCCCC----CCccccc-------------------------cccccchhHHHHHcChHHHHHHHH
Confidence 54332222 22333344321 0000000 000011124456666666555443
Q ss_pred HHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHH
Q 011277 294 STLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA 370 (489)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~ 370 (489)
.++...... ....+.+...++.|.+. +.......+..+++..+.+++.||+|+|+.+..+.....+.......
T Consensus 214 ~~l~~~~~~----~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~ 289 (382)
T TIGR00902 214 VCLIQGAHA----AYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA 289 (382)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 333222211 11122333334455553 44455566778888889999999999999888777766665544332
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCc
Q 011277 371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV-HWVINFFVGLLFLRLLEQLGPQ 449 (489)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g~~ 449 (489)
... .+..+...++..+.++... +....++.+. |++.|++++++.+.. ..++..+++.+.+.+.+..|.
T Consensus 290 ~~~--------~~~~~~~q~l~g~~~~~~~-~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~- 358 (382)
T TIGR00902 290 IEA--------FPLIFLLQILHCGTFAVCH-LAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA- 358 (382)
T ss_pred Hhh--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-
Confidence 211 1111222233333333322 2234467787 999999999998654 446777888888888888875
Q ss_pred hhhHHHHHHHHHHHHHH
Q 011277 450 LLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 450 ~~~~~~~~~~~~~~~~~ 466 (489)
..|.+.+.+.+++.++.
T Consensus 359 ~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 359 GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777777777665443
No 79
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.91 E-value=3e-22 Score=223.78 Aligned_cols=342 Identities=12% Similarity=0.024 Sum_probs=211.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHH---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccccccccc
Q 011277 89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL---CALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165 (489)
Q Consensus 89 ~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~---~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~ 165 (489)
..++..+.+.+++++.+++.|+++||+|||+++.. ..+...+....+...++++.++++|+++|++.+...+...++
T Consensus 53 ~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~ 132 (1140)
T PRK06814 53 LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSI 132 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHh
Confidence 45788889999999999999999999999998633 223333333444455899999999999999999999999999
Q ss_pred ccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHH
Q 011277 166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAE 245 (489)
Q Consensus 166 i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~ 245 (489)
+.|++|+++|++++++.+++..+|.++|+++++.+.+..+ |++.|+...+..++.++..+++||++. .+.+.+...
T Consensus 133 l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 208 (1140)
T PRK06814 133 LPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILVALLMGIAVLGWLASLFIPKTGN---AAPDLKIDR 208 (1140)
T ss_pred hHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhCCCCCC---CCCCCeecc
Confidence 9999999999999999999999999999999998877666 688885555555555555566666531 000000000
Q ss_pred HHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcch
Q 011277 246 AEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL 325 (489)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (489)
. . .++. ...++.+.+++.++...+...+..+.........+.|....++......++
T Consensus 209 ~----------~---~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~ 265 (1140)
T PRK06814 209 N----------I---IRST----------ITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATL 265 (1140)
T ss_pred c----------h---HHHH----------HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHH
Confidence 0 0 0000 012344455555555544433322221111122222222222222222456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCC-C-----------chhhHHHHHHHHHHH
Q 011277 326 ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP-G-----------SASLYLSVGGMLMFV 393 (489)
Q Consensus 326 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~ 393 (489)
.....+++.++|.++.++++|+.++++.+..+.++.++..+.+......... . ....+......++++
T Consensus 266 ~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 345 (1140)
T PRK06814 266 FLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLA 345 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHH
Confidence 6777888999999999999988877665555544444433322221000000 0 011112222222233
Q ss_pred HHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhhHHHHHH
Q 011277 394 LTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LGPQLLYSIFGTF 458 (489)
Q Consensus 394 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~ 458 (489)
++.+.. .+....+..+..|++.||+++|+.+.+..++..+++.+...+.+. .+....+.+.+.+
T Consensus 346 ~~~~~~-~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 346 AAGGLY-IVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHh-HHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 322222 223445788999999999999999999999888888877666543 3333444444433
No 80
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.91 E-value=8.6e-22 Score=196.41 Aligned_cols=367 Identities=18% Similarity=0.102 Sum_probs=203.1
Q ss_pred eeeccchhhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh---cchHH-
Q 011277 68 GVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT---TRNLI- 142 (489)
Q Consensus 68 ~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~---~~~~~- 142 (489)
+...+.+|...+ ++|++. .+.|+..+.+.++..++++++|+++||+|||+++.++..+..++...... ++...
T Consensus 27 ~~~~~~~~~~l~~~~g~s~--~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (420)
T PRK09528 27 SSWFSFFPIWLHDINGLSG--TDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQY 104 (420)
T ss_pred HHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544 477764 46789999999999999999999999999999998876665554332211 11110
Q ss_pred HHHHHHHHHhhhcccccccccccccccCC--cccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSP--PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI 220 (489)
Q Consensus 143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~~--~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~ 220 (489)
....+.++.++..+.........+.++.+ +++||+..+.......+|..+++.+++.+.+. + |++.|++..+..++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-~~~~f~~~~~~~~~ 182 (420)
T PRK09528 105 NILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNI-N-PQINFWLGSGSALI 182 (420)
T ss_pred HHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhc-C-chHhHHHHHHHHHH
Confidence 01122233333333222222222233322 34566677777777778887787777766543 4 68999886655555
Q ss_pred HHHHhhhc-cCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHH
Q 011277 221 LCLAMVFC-AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFAL 299 (489)
Q Consensus 221 ~~~~~~~~-~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (489)
..+..++. +|.++- ++.+++ ++ ++.+........+.++++.++...+.......
T Consensus 183 ~~~~~~~~~~~~~~~-------~~~~~~-~~-----------------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~ 237 (420)
T PRK09528 183 LLVLLFFAKPDAPST-------AKVANA-LG-----------------ANASAVSLKDALALLKLPKFWFLVLYVIGVAC 237 (420)
T ss_pred HHHHHhcccccccch-------hhhccc-hh-----------------cccccccHHHHHHHccCCCeEeehHHHHHHHH
Confidence 44444333 332210 000000 00 00000011123345555655443332212111
Q ss_pred HhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccC
Q 011277 300 QQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI 376 (489)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~ 376 (489)
.........+.|..+.+...+.+ .+.......+...++.++.|++.||+|+|+.+..+..+..+...+....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~----- 312 (420)
T PRK09528 238 FYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA----- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-----
Confidence 11111111223333333322332 2344555567778999999999999999998877766655544443221
Q ss_pred CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCchhhHHH
Q 011277 377 PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV-CMSVHWVINFFVGLLFLRLLEQLGPQLLYSIF 455 (489)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~ 455 (489)
.+.. .+ +....+....++.. .+....+..|.+|++.|++..+. .+....+++.+++.+.+.+.|..|+...|.++
T Consensus 313 ~~~~--~~-~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~ 388 (420)
T PRK09528 313 TGPL--EV-SILKLLHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL 388 (420)
T ss_pred ccHH--HH-HHHHHHHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence 1111 11 11111222222111 12233467888999999988766 45667788889999989999988988888888
Q ss_pred HHHHHHHHHHHHhhccc
Q 011277 456 GTFCLMAVAFVKRNVVE 472 (489)
Q Consensus 456 ~~~~~~~~~~~~~~~~e 472 (489)
+++.++..++....+++
T Consensus 389 ~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 389 GGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 88777666655555554
No 81
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.90 E-value=6.6e-21 Score=187.54 Aligned_cols=350 Identities=13% Similarity=0.092 Sum_probs=216.6
Q ss_pred hccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhh----HHHHHhHHHHHHHHHHHhhcc
Q 011277 64 GYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR----RAFQLCALPMIIGASISATTR 139 (489)
Q Consensus 64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr----~~~~~~~~~~~i~~~l~~~~~ 139 (489)
....+.+.+.+|.+.+|+|.+. .+.|+..+.+.++..++++++|+++||+||| +.+.+...+ ........++
T Consensus 17 ~~~~g~~~p~l~~~l~~~g~s~--~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~~~~~ 92 (382)
T PRK11128 17 FFAYGVFLPFWSVWLKGQGYTP--ETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFWFGAH 92 (382)
T ss_pred HHHHHHHhhhHHHHHHhcCCCH--HHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHHHhcc
Confidence 3445678888898999988764 4578999999999999999999999999994 333222221 1222334568
Q ss_pred hHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHH
Q 011277 140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219 (489)
Q Consensus 140 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~ 219 (489)
+++.+++.|++.|++.+...+...+++.|+ +++|++..+.......+|..+||+++..+.+..+ ||..|+..++..+
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~~~~~ 169 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILTAGVA 169 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHHHHHH
Confidence 899999999999999888888777777766 4568888888888889999999999988877767 6999887654444
Q ss_pred HHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHH
Q 011277 220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFAL 299 (489)
Q Consensus 220 ~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (489)
+..+...+.||.++ +++.++ ..+....++++.++++.++.......+...
T Consensus 170 ~~~~~~~~~~~~~~----~~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 219 (382)
T PRK11128 170 SMLLGQLLRPTIMP----QGESRQ--------------------------QESAGWPAWKALLKEPTVWRFLLCVSLLQG 219 (382)
T ss_pred HHHHHHHccCCCCC----cccccc--------------------------ccccccchHHHHHcChhHHHHHHHHHHHHH
Confidence 33333333444311 000000 000011235566776666655443333322
Q ss_pred HhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccC
Q 011277 300 QQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI 376 (489)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~ 376 (489)
.... ...+.+...++.+.+. +.......++.+++.++.+++.||+++|+.+..+....++.........
T Consensus 220 ~~~~----~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~---- 291 (382)
T PRK11128 220 SHAA----YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT---- 291 (382)
T ss_pred HhHh----HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh----
Confidence 2111 1112222234455443 3444455567778888899999999999988777666555443332111
Q ss_pred CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCchhhHHH
Q 011277 377 PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVH-WVINFFVGLLFLRLLEQLGPQLLYSIF 455 (489)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~g~~~~~~~~ 455 (489)
..+..+...++.++++... .+....+..+. |++++++.++..+.+. .++..++|.+.+.+.+..|. ..+...
T Consensus 292 ----~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~ 364 (382)
T PRK11128 292 ----ALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVM 364 (382)
T ss_pred ----hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHH
Confidence 1112222233333333332 23333456676 5667788888876554 34557788888888888775 455555
Q ss_pred HHHHHHHHHH
Q 011277 456 GTFCLMAVAF 465 (489)
Q Consensus 456 ~~~~~~~~~~ 465 (489)
+.+.+.+...
T Consensus 365 ~~~~~~~~~~ 374 (382)
T PRK11128 365 ALVALPALFI 374 (382)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 82
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.89 E-value=2e-20 Score=187.13 Aligned_cols=358 Identities=19% Similarity=0.193 Sum_probs=208.3
Q ss_pred eeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHH
Q 011277 69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR 148 (489)
Q Consensus 69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R 148 (489)
..+..++.+..|+|-+.+ ..|+.+...++.+++.++.|.|+|.||||.+++.+.++..+|++.++.++|...++++-
T Consensus 62 ~~a~~l~~I~~diG~~~~---~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~ 138 (599)
T PF06609_consen 62 LPASILPYINADIGGSDN---WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGM 138 (599)
T ss_pred ccHHHHHHHHHhcCCCcc---chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHH
Confidence 345567889999886533 46888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH--hh
Q 011277 149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA--MV 226 (489)
Q Consensus 149 ~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~--~~ 226 (489)
.+.|+|.|.... ....++|..|.+.|+....+...........++.++..+....+ |||.|++..+...+.++. ++
T Consensus 139 ~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~-WRw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 139 VLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG-WRWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred HHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC-cchHHHHHHHHHHHHHHHHHHH
Confidence 999999887764 45568999999999877666555444444445555544444445 799999876654444333 23
Q ss_pred hccCChHHHHhcCC---HHHHHHHHHHHh------------------CC--CchhH--HHH----------HHHhhccC-
Q 011277 227 FCAESPHWLYKKGR---TAEAEAEFEKLL------------------GG--SHVKS--SLA----------ELSKLDRG- 270 (489)
Q Consensus 227 ~~~Esp~~l~~~~~---~~~~~~~~~~~~------------------~~--~~~~~--~~~----------~~~~~~~~- 270 (489)
+.|.+.+ ..+++ ..+.-++++.+. +. ...++ ... -.--.+..
T Consensus 217 Y~PP~~~--~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~ 294 (599)
T PF06609_consen 217 YFPPPRA--QLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFG 294 (599)
T ss_pred hCCCchh--hhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhc
Confidence 3443322 21221 122222232210 00 00000 000 00000000
Q ss_pred CCCcchhHHHhhhc-cchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCC------CcchHHHHHHHHHHHHHHHHHH
Q 011277 271 DDGDIVKFEELLYG-RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL------SSGLANVFVGIANLLGSVVAMV 343 (489)
Q Consensus 271 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~g~~~~g~ 343 (489)
...+..--.+++++ |.+....+..++.... .+....+|.+......+. ..++...+.+.+..+|.++.+.
T Consensus 295 ~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~---~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~ 371 (599)
T PF06609_consen 295 APKDPLFPHRLFKDRRGFAALLVISFISGMN---FFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGL 371 (599)
T ss_pred cCCCCcCCHHHhccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHH
Confidence 00011112234544 2222222222222211 122223444433322222 2456677788888899999999
Q ss_pred HhhhcCC-chhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHH
Q 011277 344 LMDKLGR-KALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMA 422 (489)
Q Consensus 344 l~dr~gr-r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 422 (489)
+..+++| |..++.+...+.+.+.++..... .+.. .......+..+++++. .. ...+...-..|.+.-+++.|
T Consensus 372 l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~---~n~~-~~i~~~~l~g~giG~~--~~-~~~~~~ql~~p~~~ig~a~g 444 (599)
T PF06609_consen 372 LFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP---DNKN-AAIAFLVLAGFGIGGI--LV-PAIVIAQLIVPDEDIGTATG 444 (599)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHccC---CCcc-hHHHHHHHHHHhHHHH--HH-HHHHeeEeeeCchHHHHHHH
Confidence 9988877 44555665555554444332211 1111 1111111222222221 11 22234455678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011277 423 VCMSVHWVINFFVGLLFLRLL 443 (489)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~l~ 443 (489)
+..+++.+|+.++..++...+
T Consensus 445 L~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 445 LTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 999999999988887765544
No 83
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.89 E-value=1.8e-21 Score=189.81 Aligned_cols=328 Identities=15% Similarity=0.072 Sum_probs=195.7
Q ss_pred ceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc-----hhhHHH-HHhHHHHHHHHHHHhhc--
Q 011277 67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRAF-QLCALPMIIGASISATT-- 138 (489)
Q Consensus 67 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-----GRr~~~-~~~~~~~~i~~~l~~~~-- 138 (489)
..+.++.+|.+.+|+|++.+ +.++.... .+...+ .+++|+++||+ ||||.+ +.+.++.++...+.++.
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~--~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~ 79 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLK--TIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP 79 (356)
T ss_pred chhHHhHHHHHHHHcCCCHH--HHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34567788999999998765 44555433 344444 89999999998 899975 56677777776666666
Q ss_pred -chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCch-------hHHH
Q 011277 139 -RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-------WRIC 210 (489)
Q Consensus 139 -~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~-------wr~~ 210 (489)
.+.+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+..+. ||..
T Consensus 80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~ 159 (356)
T TIGR00901 80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI 159 (356)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence 45556677788888888888888888999999999999999999999999999888887666554441 7999
Q ss_pred HHHHHHHHHHHHHHhh-hccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhH
Q 011277 211 FWVSIVPAAILCLAMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV 289 (489)
Q Consensus 211 f~~~~i~~~~~~~~~~-~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (489)
|++.++..++..+..+ ..||+++. +.+.++..+. ....++++++++..+.
T Consensus 160 f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~ 210 (356)
T TIGR00901 160 FFWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQA--------------------------VLKPIREFFQRKNMIQ 210 (356)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcc---cccchhHHHH--------------------------HHHHHHHHHHhcCchH
Confidence 9887666555544433 34664220 0000000000 0012333444444222
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcch---HHHHHH-HHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHH
Q 011277 290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL---ANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM 365 (489)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~ 365 (489)
.........+.... ......+.+...++.+.+... .....+ +..+++.++++++.||+|||+.+..+.++.++..
T Consensus 211 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~ 289 (356)
T TIGR00901 211 ALLLLLLIVLYKLG-DSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTN 289 (356)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 21111111111111 111112222223335555433 333333 4667899999999999999988877766665554
Q ss_pred HHHHHHhhccC-C--CchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHH
Q 011277 366 AIQVAASSSYI-P--GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHW 429 (489)
Q Consensus 366 ~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 429 (489)
.+......... . +....+......++..++... ..+....+..|.+|+++|++.+|+.+++.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 290 AGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGL-GTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 43332211100 0 001111122122222222221 234556689999999999999999887654
No 84
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.89 E-value=1e-20 Score=187.18 Aligned_cols=366 Identities=17% Similarity=0.138 Sum_probs=214.9
Q ss_pred Hhhhhccceeeccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHh--
Q 011277 60 SFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA-- 136 (489)
Q Consensus 60 ~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~-- 136 (489)
.++.....+.+.+.+|... +++|.+ ..+.++..+.+.++..+++++.|+++||+|||+.+..+.....++.....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~g~s--~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 88 (396)
T TIGR00882 11 FFLYFFIMSAYFPFFPIWLHDVNGLS--KTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIY 88 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3343344445566666554 456765 44678999999999999999999999999999999887776655433221
Q ss_pred -hc-----chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHH
Q 011277 137 -TT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC 210 (489)
Q Consensus 137 -~~-----~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~ 210 (489)
.. .....+++.|++.|++.+...+....+..|..+ ++++..+.......+|..+++.+++.+.+. + ||.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~-~~~~ 164 (396)
T TIGR00882 89 VFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSI-D-PQIV 164 (396)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhcc-C-chHH
Confidence 11 123345667899999888877777777666533 334455666666678888888887766543 4 7999
Q ss_pred HHHHHHHHHHHHHHhhh-ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhH
Q 011277 211 FWVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV 289 (489)
Q Consensus 211 f~~~~i~~~~~~~~~~~-~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (489)
|++..+..++..+..+. .||+|+. ++.++. . + .+.++.+..+..+.+++++++.
T Consensus 165 f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~----~-------------~-~~~~~~~~~~~~~~l~~~~~~~ 219 (396)
T TIGR00882 165 FWLGSGFALILMLLLMFAKPKAPSS-------ATVANA----L-------------G-ANASAFSLKLALELFRQRKFWM 219 (396)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchh-------hhhhcc----c-------------c-cccCCCCHHHHHHHHcCCcHHH
Confidence 98865555554433333 3443321 000000 0 0 0001111224556677776554
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHH
Q 011277 290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA 366 (489)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~ 366 (489)
.....................|....++..+.+ .+.......+...++....+++.||+|||+.+..+....++...
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~ 299 (396)
T TIGR00882 220 FVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRII 299 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 433222211111111111222323322222222 23344445567777888899999999999988777665555443
Q ss_pred HHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 011277 367 IQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV-CMSVHWVINFFVGLLFLRLLEQ 445 (489)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 445 (489)
+.... .+.. ......++...+.... ......+..|..|++.++++.+. .+....+++.+++.+.+.+.+.
T Consensus 300 ~~~~~-----~~~~---~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~ 370 (396)
T TIGR00882 300 GSSFA-----TTAL---EVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS 370 (396)
T ss_pred HHHhc-----CChH---HHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 32211 1111 1111122222222211 11223356777888888887776 5677888999999999999998
Q ss_pred hCCchhhHHHHHHHHHHHHH
Q 011277 446 LGPQLLYSIFGTFCLMAVAF 465 (489)
Q Consensus 446 ~g~~~~~~~~~~~~~~~~~~ 465 (489)
.|+...|.+.+++.++....
T Consensus 371 ~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 371 IGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 99888888888777666544
No 85
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.89 E-value=2.6e-22 Score=207.54 Aligned_cols=298 Identities=16% Similarity=0.172 Sum_probs=192.2
Q ss_pred HHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH
Q 011277 55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI 134 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l 134 (489)
..++..+......+..+..++++.++|+++.. +.|++.+.+.+|++++.++.++++||+|||+.+.++.+++++++++
T Consensus 37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~--~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll 114 (633)
T TIGR00805 37 LLTCAQLQGLLYNGLVNSSLTTIERRFKLSTS--SSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL 114 (633)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhCCCCC--cceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence 33444455556667888899999999998755 4689999999999999999999999999999999999999999999
Q ss_pred Hhhcc---------------------------------------------------hHHHHHHHHHHHhhhccccccccc
Q 011277 135 SATTR---------------------------------------------------NLIGMLLGRFVVGTGMGLGPTVAA 163 (489)
Q Consensus 135 ~~~~~---------------------------------------------------~~~~l~~~R~l~G~g~g~~~~~~~ 163 (489)
.++.+ .+..++++|+++|+|.+..++...
T Consensus 115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~ 194 (633)
T TIGR00805 115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGI 194 (633)
T ss_pred HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCc
Confidence 87652 245677899999999999999999
Q ss_pred ccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCC------------------ch---hHHHHHHHHHHHHHHH
Q 011277 164 LYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA------------------GW---WRICFWVSIVPAAILC 222 (489)
Q Consensus 164 ~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~------------------~~---wr~~f~~~~i~~~~~~ 222 (489)
.++.|++|+++|+++.+++..+..+|+.+|+++++.+.+.. .| ||..|++.++..++..
T Consensus 195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~ 274 (633)
T TIGR00805 195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS 274 (633)
T ss_pred hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887654321 12 6777777666665555
Q ss_pred HHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277 223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL 302 (489)
Q Consensus 223 ~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (489)
+..+++||+..-...+.+.++.++...+ .+...... + ............+++++++.+....+..++.....
T Consensus 275 v~l~~~p~~lp~~~~~~~~~~~~~~~~~-~~~~~~~~---~---~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~- 346 (633)
T TIGR00805 275 IPFFFFPKALPKEGKRVNVDVHETEKLE-KSEDKSRK---K---NSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAF- 346 (633)
T ss_pred HHHHhCccccCCcccccchhhhhhhccc-ccccccch---h---hhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-
Confidence 5556666642100000000000000000 00000000 0 00000001123556777776665554444333222
Q ss_pred hhHHHHHHhHHHHHH-hcCCCcc---hHHHHHHH-HHHHHHHHHHHHhhhcCC--chhHHHhhHHHHHHH
Q 011277 303 SGINAIFYFSSSVFK-SAGLSSG---LANVFVGI-ANLLGSVVAMVLMDKLGR--KALLQWSFFSMAVSM 365 (489)
Q Consensus 303 ~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~i-~~~~g~~~~g~l~dr~gr--r~~~~~~~~~~~i~~ 365 (489)
.....+.+..++ +.+.+.. .......+ +.++|.+++|+++||+++ |+.+..+.....++.
T Consensus 347 ---~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 347 ---NGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred ---HHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 222233343332 3455443 33333333 457899999999999984 455555555444443
No 86
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.88 E-value=8.5e-21 Score=191.10 Aligned_cols=138 Identities=15% Similarity=0.209 Sum_probs=117.1
Q ss_pred hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh-chhhHHHHHhHHHHHHHHHHHhhcchHHH-HHHHHHHHhh
Q 011277 76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIG-MLLGRFVVGT 153 (489)
Q Consensus 76 ~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~~~~~~~~-l~~~R~l~G~ 153 (489)
.+.+++|++.++ ..++.+.+.....+..+++|+++|| +|||+++..+.+++.+++++++++.+... +.++|.++|+
T Consensus 40 yl~~~lg~~~~~--a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~i 117 (489)
T PRK10207 40 FFVKQLGFSQEQ--AFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAV 117 (489)
T ss_pred HHHHHcCCCHHH--HHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHh
Confidence 346678876544 4577777877777778899999999 99999999999999999999999877555 4479999999
Q ss_pred hcccccccccccccccCCcc--cchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277 154 GMGLGPTVAALYVTEVSPPF--VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV 216 (489)
Q Consensus 154 g~g~~~~~~~~~i~e~~~~~--~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i 216 (489)
|.|...+....+++|.+|++ +|+++.+++.++.++|..+|+.++..+.+..| ||+.|++..+
T Consensus 118 g~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g-w~~~F~i~~i 181 (489)
T PRK10207 118 GNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG-YSVTYNLCGA 181 (489)
T ss_pred ccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHHH
Confidence 99999999999999999987 45778999999999999999999888888777 6899987643
No 87
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.88 E-value=3e-20 Score=187.06 Aligned_cols=160 Identities=14% Similarity=0.157 Sum_probs=132.3
Q ss_pred HHHHhhhhccceeeccchhhhhhh---cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh-chhhHHHHHhHHHHHHHH
Q 011277 57 TLSSFLFGYHLGVVNEPLESISLD---LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~ 132 (489)
....+...+....+.+.+|.+..+ +|++ +.+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s--~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~ 93 (475)
T TIGR00924 16 FFVELWERFSYYGMQGILAVYLVQQAGLGFS--QEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGH 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 334445444444455566666543 6665 4467899999999999999999999999 899999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCccc---chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHH
Q 011277 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV---RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI 209 (489)
Q Consensus 133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~---Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~ 209 (489)
++.+.+++++.+.++|++.|+|.|...+....+++|++|+++ |+++.+++..+.++|..+|+.++..+.+..+ ||+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g-~~~ 172 (475)
T TIGR00924 94 FMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG-YHV 172 (475)
T ss_pred HHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC-hHH
Confidence 999999998889999999999999988899999999998765 8889999999999999999999888777667 699
Q ss_pred HHHHHHHHHH
Q 011277 210 CFWVSIVPAA 219 (489)
Q Consensus 210 ~f~~~~i~~~ 219 (489)
.|++.++..+
T Consensus 173 ~f~~~~~~~~ 182 (475)
T TIGR00924 173 GFNLAAVGMV 182 (475)
T ss_pred HHHHHHHHHH
Confidence 9987654333
No 88
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.87 E-value=2.8e-20 Score=186.75 Aligned_cols=333 Identities=16% Similarity=0.135 Sum_probs=201.0
Q ss_pred hhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh----chhh-HHHHHhHHHHHHHHHHHhhcch------HHH
Q 011277 75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRR-RAFQLCALPMIIGASISATTRN------LIG 143 (489)
Q Consensus 75 ~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr----~GRr-~~~~~~~~~~~i~~~l~~~~~~------~~~ 143 (489)
+.+.+++|++ ..+.|++.+...+..++..++.|+++|| +||| |.++.+.+.++++.+++...++ ...
T Consensus 24 ~~~~~~~g~s--~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 101 (437)
T TIGR00792 24 FFYTDVLGLS--AAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY 101 (437)
T ss_pred HHHHHccCCC--HHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 3445567775 4456899999999999999999999997 7884 4566777888888777766553 456
Q ss_pred HHHHHHHHhhhcccccccccccccccC-CcccchhhhhHHHHHHHHHHHHHHHhhcccc-------cCCchhHHHHHHHH
Q 011277 144 MLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-------EIAGWWRICFWVSI 215 (489)
Q Consensus 144 l~~~R~l~G~g~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~-------~~~~~wr~~f~~~~ 215 (489)
+++.+++.+++.+.......++..|.. ++++|++..++......+|..++..+..++. +..+ ||+.+++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g-~~~~~~i~~ 180 (437)
T TIGR00792 102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG-WFMFALVLA 180 (437)
T ss_pred HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-HHHHHHHHH
Confidence 677889999888876666677888887 5789999999888777777554433322221 1234 799888765
Q ss_pred HHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHH
Q 011277 216 VPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGS 294 (489)
Q Consensus 216 i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (489)
+..++..+. ....+|.++ .+.++. +.+.+....+++++++++++......
T Consensus 181 ~l~~~~~~~~~~~~~e~~~-----~~~~~~------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~ 231 (437)
T TIGR00792 181 LIGVVSLIICFFGTKERYS-----EIPKNI------------------------EKKLSLKQIFKALFKNDQLLILCLAY 231 (437)
T ss_pred HHHHHHHHHHHcCCEecCC-----CCCccc------------------------ccCCCHHHHHHHHhCCHHHHHHHHHH
Confidence 555444333 445566531 000000 00000111234455666665554433
Q ss_pred HHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhc
Q 011277 295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS 374 (489)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~ 374 (489)
++.............+|....++ .....+.......++.+++.++.+++.||+|+|+.+..+.....++........
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-- 308 (437)
T TIGR00792 232 LFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-- 308 (437)
T ss_pred HHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc--
Confidence 33222211111112222222211 111123344455788889999999999999999988887666665544433211
Q ss_pred cCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277 375 YIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 447 (489)
.. .+......++..++.+. ..+..+.+.+|..| ++.+|+..|+.+...+++..+++.+.+.+++..|
T Consensus 309 ---~~--~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 309 ---SN--LPLILVLIILAGFGQNF-VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred ---hh--HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11 11111111222222221 12445556667654 5668999999999999999999999888887665
Q ss_pred C
Q 011277 448 P 448 (489)
Q Consensus 448 ~ 448 (489)
+
T Consensus 383 ~ 383 (437)
T TIGR00792 383 Y 383 (437)
T ss_pred C
Confidence 4
No 89
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.86 E-value=2e-20 Score=179.84 Aligned_cols=181 Identities=16% Similarity=0.140 Sum_probs=146.9
Q ss_pred HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~ 132 (489)
.+++|+..|+.-+=.+ ...+.|.+.+|+|++.++. .|.+.+.++.+|++.+++.|+++||+|.|+++.++.+.+++.+
T Consensus 29 ~~~lC~fGF~~e~R~n-~s~a~p~L~~elglT~~qv-~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t 106 (511)
T TIGR00806 29 VLYLCFYGFMAQFRPG-ESFITPYLLTVLNFTEETV-TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVW 106 (511)
T ss_pred HHHHHHHHHHHHhhch-HHHHHHHHHHHcCCCHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 4556666666544332 3445678888999986542 6899999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (489)
Q Consensus 133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~ 212 (489)
++.++++++..+.+.|++.|++.|+.. ....++..++|+++|+++.++...+..+|.+++++++..+. ..+ ||+.+.
T Consensus 107 ~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~g-Wr~y~~ 183 (511)
T TIGR00806 107 LLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLG-WISYST 183 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-chhHHH
Confidence 999999999999999999999999999 89999999999999999999999999999888888877644 345 576654
Q ss_pred H---HHHHHHHHHHHhhhccCChHHHHhc
Q 011277 213 V---SIVPAAILCLAMVFCAESPHWLYKK 238 (489)
Q Consensus 213 ~---~~i~~~~~~~~~~~~~Esp~~l~~~ 238 (489)
+ ......+.+++.+++|..++-++.+
T Consensus 184 Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~ 212 (511)
T TIGR00806 184 LNIISLVFMTFSVFLALFLKRPKRSLFFN 212 (511)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhhhhc
Confidence 4 3333444555667788666545444
No 90
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.86 E-value=5.7e-20 Score=168.50 Aligned_cols=143 Identities=24% Similarity=0.270 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccc
Q 011277 87 TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYV 166 (489)
Q Consensus 87 ~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i 166 (489)
..-.|.+.|.|.++..+.++.+|.++||+|||+++++|++..++...+.+.+.||..++++|++.|+..|-. .+..+++
T Consensus 67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAii 145 (451)
T KOG2615|consen 67 VFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAII 145 (451)
T ss_pred chhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHHH
Confidence 344689999999999999999999999999999999999999999999999999977777799999998765 4677899
Q ss_pred cccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc---CCchhHHHHH----HHHHHHHH-HHHHhhhccCCh
Q 011277 167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE---IAGWWRICFW----VSIVPAAI-LCLAMVFCAESP 232 (489)
Q Consensus 167 ~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~---~~~~wr~~f~----~~~i~~~~-~~~~~~~~~Esp 232 (489)
+|+.++++|++.++.++.+..+|.++||.+|+.+.+ ..+ +.+|. +..+.... ..+..+++|||-
T Consensus 146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g--~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG--SYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred HhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc--cCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999999999999999999999999998876 222 12222 22222222 344567889994
No 91
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.86 E-value=1.6e-19 Score=181.55 Aligned_cols=371 Identities=18% Similarity=0.194 Sum_probs=234.0
Q ss_pred eeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh-----cchHH
Q 011277 68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-----TRNLI 142 (489)
Q Consensus 68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~-----~~~~~ 142 (489)
.+...+++-+..++ +.+....+++.....+-..+.+++.|.++||+.||++++.+.++..+...+.+. ..+.+
T Consensus 27 ~~~~va~~wlv~~l--t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~ 104 (524)
T PF05977_consen 27 WMQTVALAWLVTQL--TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPW 104 (524)
T ss_pred HHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHH
Confidence 33444555555553 455667788888889999999999999999999999999998887665544332 24778
Q ss_pred HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH
Q 011277 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC 222 (489)
Q Consensus 143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~ 222 (489)
.+++.-++.|++.+...|...+++.|+.|+++...+.++.++..++..++||.+|+.+....| -.+.|++.++..++..
T Consensus 105 ~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~~~f~inalsfl~~i 183 (524)
T PF05977_consen 105 LLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-AAAAFLINALSFLISI 183 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999998889988887665555 3677777654444333
Q ss_pred HHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277 223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL 302 (489)
Q Consensus 223 ~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (489)
+.....++.+ +.+..+.++.. + ++ ...++....++..+..+...+++.+...
T Consensus 184 ~~l~~~~~~~-----~~~~~~~e~~~----------~---~l----------~~G~ryv~~~~~l~~~l~~~~~~~l~~~ 235 (524)
T PF05977_consen 184 LALLRWKPPP-----PPSSLPRERFF----------S---AL----------REGLRYVRSSPPLRSVLLRSFLFNLFAS 235 (524)
T ss_pred HHHHHccccc-----cccccchhhhh----------h---hH----------HHHHHHHhcchHHHHHHHHHHHHHHhhh
Confidence 3322222111 00000000000 0 00 0012222233444444333333222211
Q ss_pred hhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhh
Q 011277 303 SGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL 382 (489)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 382 (489)
.....++++..+.++.....-|+.....++|.++|+++.+++.+|+++++++..+.+..+++.+.+.... ..
T Consensus 236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~--------~~ 307 (524)
T PF05977_consen 236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP--------SF 307 (524)
T ss_pred HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch--------HH
Confidence 1111222332222222222235677788899999999999999999988887777666665554433221 11
Q ss_pred HHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Q 011277 383 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA 462 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 462 (489)
+.....+++.+.+.... .....+..-+..|.+.||+..++..++.+.+..++..+.+.+.+..|...++.+.++..++.
T Consensus 308 ~~~~~~l~l~G~~~~~~-~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~ 386 (524)
T PF05977_consen 308 WLALIALFLAGAAWIIA-NSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLS 386 (524)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 22222222222222221 12233456788899999999999999988888888888888888888887777666555444
Q ss_pred HHHH-HhhcccCCCCCH
Q 011277 463 VAFV-KRNVVETKGKSL 478 (489)
Q Consensus 463 ~~~~-~~~~~et~~~~~ 478 (489)
.++. ...+|+.+..+.
T Consensus 387 ~~~~~~~~l~~~~~~d~ 403 (524)
T PF05977_consen 387 ALIALRFPLRQGEELDL 403 (524)
T ss_pred HHHHHHhcCcccccCCC
Confidence 4433 334666555443
No 92
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.85 E-value=8e-19 Score=173.34 Aligned_cols=368 Identities=12% Similarity=0.019 Sum_probs=213.5
Q ss_pred HHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHH--HHHHHHHHHHHHHhh-HhhhhhchhhHHHHHhHHHH-HHH
Q 011277 56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLV--VSMCLGGAFIGSTLS-GWIADGVGRRRAFQLCALPM-IIG 131 (489)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~s~~~~g~~ig~~~~-g~l~Dr~GRr~~~~~~~~~~-~i~ 131 (489)
+....+..|...+...+.+|.+.+|.|.+.+ +.|+. .+.......+.++++ ++.+||+||||.+++...+. .+.
T Consensus 6 ~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~--~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~ 83 (390)
T TIGR02718 6 LGLLYLSQGIPIGLAMDALPTLLREDGAPLT--ALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC 83 (390)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence 3444477788888889999999999987654 44664 344555555666666 55789999999976665332 211
Q ss_pred HHHHh-h--cch-HHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchh
Q 011277 132 ASISA-T--TRN-LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW 207 (489)
Q Consensus 132 ~~l~~-~--~~~-~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~w 207 (489)
....+ . ..+ ..+++..-++.++..+...+....+..|..++++++...+....+..+|..+|......+.+..+ |
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g-w 162 (390)
T TIGR02718 84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG-Q 162 (390)
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-H
Confidence 22222 1 222 33444555556566666666777778888888888888888888888888888776666666666 6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccch
Q 011277 208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF 287 (489)
Q Consensus 208 r~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (489)
|..|++.+...++..+..++.+|+++ + +.++.++ +..++++.++++..
T Consensus 163 ~~~f~~~a~l~~~~~~~~~~~~~~~~----~-~~~~~~~---------------------------~~~~~~~~l~~~~~ 210 (390)
T TIGR02718 163 RPAFLLVACVPLASLVCVLWLKDRAV----A-SPEAPLA---------------------------RRASLFRFFRRPLA 210 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCc----C-ccccchh---------------------------hHHHHHHHHcCcCH
Confidence 99998876555544444444443321 0 0000000 00123445555655
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcch---HHHHHH-HHHHHHHHHHHHHhhhcCCchhHHHhhHHHHH
Q 011277 288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL---ANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAV 363 (489)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i 363 (489)
+......++....... ...+.+..+++.|.+... .....+ +..+++.+++|++.||+|+|+.+..+....++
T Consensus 211 ~~~~~~~~l~~~~~~~----~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 211 WSLLALALLSAMTAVS----GFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGS 286 (390)
T ss_pred HHHHHHHHHHHHHHHH----HHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5444433332221111 111223333445665433 333333 35567788999999999999988776554433
Q ss_pred HHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 364 SMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPS-RIRAKAMAVCMSVHWVINFFVGLLFLRL 442 (489)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~~~~~~~~~~~~~l 442 (489)
................ .........+..+..+... +.......+..++ +.+++.+++.+++.+++..++|.+.+.+
T Consensus 287 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l 363 (390)
T TIGR02718 287 LALLWFAQAAFWLAPG--IAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYL 363 (390)
T ss_pred HHHHHHHHHHcccCCc--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221111110111 1111111111111122111 1222233444554 8999999999999999999999999999
Q ss_pred HHHhCCchhhHHHHHHHHHHHHH
Q 011277 443 LEQLGPQLLYSIFGTFCLMAVAF 465 (489)
Q Consensus 443 ~~~~g~~~~~~~~~~~~~~~~~~ 465 (489)
.+..|+...|.+.+.+.+++.+.
T Consensus 364 ~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 364 TDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHccHHHHHHHHHHHHHHHHH
Confidence 99888877777776666655443
No 93
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.2e-20 Score=173.84 Aligned_cols=348 Identities=16% Similarity=0.122 Sum_probs=229.3
Q ss_pred hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhc
Q 011277 76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGM 155 (489)
Q Consensus 76 ~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~ 155 (489)
...++...+.++.+.|++.+.+.+...+-+++.|++.||+|+|-.+++++..+...+++.++.++++.++++|.+||+|.
T Consensus 94 ~~~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 94 SPAEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGS 173 (464)
T ss_pred CchhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhH
Confidence 34455555666778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCCccc-chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccCChHH
Q 011277 156 GLGPTVAALYVTEVSPPFV-RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHW 234 (489)
Q Consensus 156 g~~~~~~~~~i~e~~~~~~-Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~ 234 (489)
+.......++++|.+|++. |++++++.-.+.++|.++||++|+.+.+..| .+.+|.+.++..++-..+.+++-|..
T Consensus 174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~-- 250 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPT-- 250 (464)
T ss_pred HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCcc--
Confidence 9999999999999999755 7999999999999999999999999988888 49999987666666555555543321
Q ss_pred HHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHH-HHHHhHH
Q 011277 235 LYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGIN-AIFYFSS 313 (489)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 313 (489)
+.+.+ +..+..+++++++++..... .....++-..+...- ....|-.
T Consensus 251 ---~~~~~----------------------------~~~~~~~~~~Ll~dP~I~~~-agai~~~n~~lafLePtlslwm~ 298 (464)
T KOG3764|consen 251 ---EMDPD----------------------------STEQGTPMWSLLMDPYILLI-AGAITFSNSSLAFLEPTLSLWML 298 (464)
T ss_pred ---ccCcc----------------------------ccccCccHHHHHhCchHhhh-hcchhhccchHHHhCcccHHHHH
Confidence 00000 01112234455554433221 111111111111110 1111111
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCch--hHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHH
Q 011277 314 SVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKA--LLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM 391 (489)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
+.+...+...|+.+++.++..++|+.+.|.+.||++.-+ ....+.+..++++...-.. ......++...++.+
T Consensus 299 e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~-----~~~~~L~vp~~~l~~ 373 (464)
T KOG3764|consen 299 ETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA-----TSIAQLWVPNFGLGF 373 (464)
T ss_pred HhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh-----hhHHHHhhhhHHHHH
Confidence 222223345678889999999999999999999999433 2223333333222211111 111122222222221
Q ss_pred HHHHHhcCccccccccccccCCch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHH
Q 011277 392 FVLTFALGAGPVPSLLLPEIFPSR---IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA 464 (489)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 464 (489)
.+...-....|... +..+.-..+ .-+...++....-.++.+++|.+.+.+...+|..|...+.+...+.-..
T Consensus 374 ~i~~~dasl~P~l~-~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyap 448 (464)
T KOG3764|consen 374 GIGLADASLIPTLG-YLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAP 448 (464)
T ss_pred HHHHHHHHHhhhhH-HhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHH
Confidence 11111112223322 333333334 5677888888877888888998888888899999888888877665543
No 94
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.84 E-value=2.7e-18 Score=159.68 Aligned_cols=375 Identities=18% Similarity=0.216 Sum_probs=245.0
Q ss_pred HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~ 133 (489)
+.++.--++.|.......+.+|.+.+.++++.. +.+++...++.||.+++++.|.+.+|+|+|+.++.++.++++++.
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~--~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~ 93 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYF--EASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA 93 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHH--HHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344444567788888888899999999988754 568999999999999999999999999999999999999999999
Q ss_pred HH---hhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC-------
Q 011277 134 IS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI------- 203 (489)
Q Consensus 134 l~---~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~------- 203 (489)
+. +...++..++++-++.|.|.|...+....|++.+.+++.-.+.+++.+..+.+|.+.+|+++..+...
T Consensus 94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~ 173 (422)
T COG0738 94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS 173 (422)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence 97 46788999999999999999999999999999999998888899999999999999999987654331
Q ss_pred -----------CchhHHHHHHHHHHHHHHHHHhhh--ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccC
Q 011277 204 -----------AGWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRG 270 (489)
Q Consensus 204 -----------~~~wr~~f~~~~i~~~~~~~~~~~--~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (489)
...|+++|...+...+++.+.... .||.+ .++ .++.
T Consensus 174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~--------~~~-----------------------~~~~ 222 (422)
T COG0738 174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQ--------VAA-----------------------PSLG 222 (422)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCC--------ccc-----------------------cccc
Confidence 112567766543333322222211 12210 000 0000
Q ss_pred CCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cCCC---cchHHHHHHHHHHHHHHHHHHHhh
Q 011277 271 DDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLS---SGLANVFVGIANLLGSVVAMVLMD 346 (489)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~l~d 346 (489)
+.+.....+.+++++++.-.++.+++.-........+. ....+ .+.+ .........++..+|.+++.++..
T Consensus 223 -~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~----~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~ 297 (422)
T COG0738 223 -ASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLV----SYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMS 297 (422)
T ss_pred -ccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHH----HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111456678888888777766666554433222222 22222 3333 223455566788899999999999
Q ss_pred hcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHH
Q 011277 347 KLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMS 426 (489)
Q Consensus 347 r~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 426 (489)
|+...+.+........+.++...... +....+. +.+.+ .+.....|..+....+..| ++-..+.++ ..
T Consensus 298 ~~~~~k~Laf~a~~~ill~~~~~l~~-----g~v~~~~----l~~ig-~F~simfPTIfslal~~l~-~~ts~~s~~-l~ 365 (422)
T COG0738 298 RIKPEKYLAFYALIAILLLLAVALIG-----GVVALYA----LFLIG-LFNSIMFPTIFSLALKNLG-EHTSVGSGL-LV 365 (422)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHhc-----ChHHHHH----HHHHH-HHhHHHHHHHHHHHHhccC-cccccccee-ee
Confidence 99888877655433333333322222 1111111 11111 1222234555556667777 333333333 33
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277 427 VHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSL 478 (489)
Q Consensus 427 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 478 (489)
+.-+|+.+.|.+.+.+.|..|....+.....+|.+..++..+.-...|++..
T Consensus 366 maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~~~~~~~~~~k~~~~ 417 (422)
T COG0738 366 MAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFFALIGKKSKGRLS 417 (422)
T ss_pred eheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 4456888999999999898887776665666666665554444444555543
No 95
>PTZ00207 hypothetical protein; Provisional
Probab=99.83 E-value=7.4e-18 Score=170.00 Aligned_cols=170 Identities=18% Similarity=0.057 Sum_probs=123.4
Q ss_pred ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc------chHHHH
Q 011277 71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT------RNLIGM 144 (489)
Q Consensus 71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~------~~~~~l 144 (489)
+...|.+.+++|++.++ .+++.+. ...+++++++.|+++||+|||+++.++.+++.++.++++++ .+++.+
T Consensus 47 sv~s~~L~~~lgls~~~--l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l 123 (591)
T PTZ00207 47 NLISGAMQARYNLTQRD--LSTITTV-GIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRL 123 (591)
T ss_pred HHHHHHHHHHhCcCHHH--HHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHH
Confidence 34567789999987554 4555554 23445677889999999999999999999999999999987 689999
Q ss_pred HHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHH-HHHHhhcccccCCchhHHHHHHHHHHHHH-HH
Q 011277 145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM-GSLLIGIPVKEIAGWWRICFWVSIVPAAI-LC 222 (489)
Q Consensus 145 ~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~-~g~~~~~~l~~~~~~wr~~f~~~~i~~~~-~~ 222 (489)
.+.|+++|+|.+...+.+...+.+++| ++||++.++...+..+|.. .+++....+. .+ |+..|++.++..++ .+
T Consensus 124 ~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~-~~~~fl~l~vl~~vv~l 199 (591)
T PTZ00207 124 SVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DN-TSAYFFFLMSFALVVGI 199 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh-HHHHHHHHHHHHHHHHH
Confidence 999999999999888888888999986 6799999999999999975 4555544433 23 56666554333333 33
Q ss_pred HHhh--hccCChHHHHhcCCHHHHHHH
Q 011277 223 LAMV--FCAESPHWLYKKGRTAEAEAE 247 (489)
Q Consensus 223 ~~~~--~~~Esp~~l~~~~~~~~~~~~ 247 (489)
+... ..||.|++...+++.++.++.
T Consensus 200 l~~~~vr~p~~~~~~~~~~~~~~~~~~ 226 (591)
T PTZ00207 200 LAIVFMRLPPFHLTGYQEKHLDEEEKA 226 (591)
T ss_pred HHHhheeCCcchhhcccccCCCHHHHH
Confidence 3333 346666665444444444443
No 96
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.82 E-value=1.3e-17 Score=169.06 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=118.2
Q ss_pred HHHhhhhccceeeccchh-hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh-chhhHHHHHhHHHHHHHHHHH
Q 011277 58 LSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASIS 135 (489)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~ 135 (489)
...+........+...++ .+.+++|++.++ .++..+.+........+++|+++|| +|||+++..+.++++++..++
T Consensus 28 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~--a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~ 105 (500)
T PRK09584 28 SIELWERFGYYGLQGIMAVYLVKQLGMSEAD--SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALV 105 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 333344333333333343 345788886543 3455655554444556789999999 599999999999999999999
Q ss_pred hhcc-hHHHHHHHHHHHhhhcccccccccccccccCCccc--chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277 136 ATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (489)
Q Consensus 136 ~~~~-~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~--Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~ 212 (489)
++++ +...+.++|+++|+|.|...+....+++|++|+++ |+.+.+++..+..+|..+|+++++.+.+..| ||+.|+
T Consensus 106 ~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~~F~ 184 (500)
T PRK09584 106 AWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSVAFA 184 (500)
T ss_pred HHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHHHHH
Confidence 8874 45667788999999999888888889999998654 4457788889999999999999888877667 699998
Q ss_pred HHHHHHH
Q 011277 213 VSIVPAA 219 (489)
Q Consensus 213 ~~~i~~~ 219 (489)
+..+...
T Consensus 185 i~~i~~~ 191 (500)
T PRK09584 185 LSVVGML 191 (500)
T ss_pred HHHHHHH
Confidence 8654333
No 97
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.79 E-value=1.4e-17 Score=167.36 Aligned_cols=373 Identities=16% Similarity=0.130 Sum_probs=213.5
Q ss_pred HHHHHHhhhhccceeeccch-hhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhch-----hhHHHHHhHHHH
Q 011277 55 VATLSSFLFGYHLGVVNEPL-ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQLCALPM 128 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~G-----Rr~~~~~~~~~~ 128 (489)
++....+..|.. ......+ +.+.+++|++.++ .+...+...+.+.+-.+ +|+++||++ ||+.++++.++.
T Consensus 30 ~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~--i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~ 105 (468)
T TIGR00788 30 IGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGAR--YQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLG 105 (468)
T ss_pred HHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHH--HHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence 333344666766 5444444 4555578987654 45678888888888666 999999998 788777777665
Q ss_pred H-HHHHHHhhcchHHHHH-HHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHH---HHHHHHHHHhhcccccC
Q 011277 129 I-IGASISATTRNLIGML-LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIAT---CLGLMGSLLIGIPVKEI 203 (489)
Q Consensus 129 ~-i~~~l~~~~~~~~~l~-~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~---~~G~~~g~~~~~~l~~~ 203 (489)
+ ++....+..++..... +.+++.+++.+..-....++..|..+ ++++...+..+..+ .+|.++++.+++.+.+.
T Consensus 106 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~ 184 (468)
T TIGR00788 106 SAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK 184 (468)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3322233334544444 48999999999888899999999999 66655544544444 47888888888777666
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhh
Q 011277 204 AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLY 283 (489)
Q Consensus 204 ~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (489)
.+ ||..|++.+...++..+...+++|++... +.+.++.+..... .......+... .......+.++
T Consensus 185 ~~-~~~~f~~~a~l~ll~~~~~~~~~E~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~-------~~~~~l~~~l~ 250 (468)
T TIGR00788 185 TL-TRILFLITAALLLLQLFVSNLSKERRAFV--RPRIGTYLEMNMA----LLTLGVLANVK-------VQILGLRGAIQ 250 (468)
T ss_pred cC-cchHHHHHHHHHHHHHHHHHhcccccccc--cccccccchhhhh----hhhhhHHHHHH-------HHHHHHHHHHh
Confidence 66 69888876555555455556778863100 0000000000000 00000000000 00112233344
Q ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHH
Q 011277 284 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV 363 (489)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i 363 (489)
++..+......++............+++.+...+......|......+++.+++..+.+++.+|++.|+++..+.+...+
T Consensus 251 ~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~ 330 (468)
T TIGR00788 251 LLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTL 330 (468)
T ss_pred cHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 44433322222220111111111111222232333333456777778899999999999999999999988777666655
Q ss_pred HHHHHHHHhhccC--CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011277 364 SMAIQVAASSSYI--PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR 441 (489)
Q Consensus 364 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 441 (489)
+............ ......++......+..+.+.+...|. ..+..+..|++.+++..++..++.+++..+++.+...
T Consensus 331 ~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~ 409 (468)
T TIGR00788 331 SSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVL 409 (468)
T ss_pred HHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433211100000 000001111122223333344444444 4578899999999999999999999999999987777
Q ss_pred HHHHhC
Q 011277 442 LLEQLG 447 (489)
Q Consensus 442 l~~~~g 447 (489)
+.+..|
T Consensus 410 l~~~~g 415 (468)
T TIGR00788 410 LMETIG 415 (468)
T ss_pred HHHHcC
Confidence 777777
No 98
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.1e-17 Score=167.41 Aligned_cols=381 Identities=17% Similarity=0.136 Sum_probs=233.0
Q ss_pred hhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchH
Q 011277 62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL 141 (489)
Q Consensus 62 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~ 141 (489)
.+|...+ +....+.+.++++.+.++ .+|+.++....+.+..++.+.+.||+|.|++.+.+.++..+|.+++.+++++
T Consensus 58 ~~g~~~~-~Gv~~~~~~~~f~~s~~~--~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i 134 (509)
T KOG2504|consen 58 TDGLINS-FGLLFEELMDYFGSSSSQ--IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSL 134 (509)
T ss_pred hhcchhe-ehhhHHHHHHHhCCCccH--HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444332 345678899999877654 5799999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277 142 IGMLL-GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI 220 (489)
Q Consensus 142 ~~l~~-~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~ 220 (489)
+++++ .=++.|+|.|..+.....++..+| +++|+.+.++...+..+|..+-+.+.-.+.+..| ||+.+++.....+-
T Consensus 135 ~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G-~r~~~l~~~~~~l~ 212 (509)
T KOG2504|consen 135 WQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG-WRGALLIFGGISLN 212 (509)
T ss_pred HHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC-cHHHHHHHHHHHHH
Confidence 88775 689999999999988888888665 5569999999999999987666666555566667 57766654333333
Q ss_pred HHHH-hhhccCChHHHHhcCCHHHHHHHHHHH-----------h--CCC-chh---HHHHHHHhhccCCC--CcchhH--
Q 011277 221 LCLA-MVFCAESPHWLYKKGRTAEAEAEFEKL-----------L--GGS-HVK---SSLAELSKLDRGDD--GDIVKF-- 278 (489)
Q Consensus 221 ~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~-----------~--~~~-~~~---~~~~~~~~~~~~~~--~~~~~~-- 278 (489)
.++. ...-|.+++- +.+.+++.+..... . +.. ..+ ....+..+.+++.. ..+...
T Consensus 213 ~~~~~~~~rp~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (509)
T KOG2504|consen 213 VLVAGALLRPLSPPK---KPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSM 289 (509)
T ss_pred HHHHHHHcCCCCcCC---CchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhh
Confidence 3333 3333423211 00000000000000 0 000 000 00000000000000 111111
Q ss_pred --HHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 011277 279 --EELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKAL 353 (489)
Q Consensus 279 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~ 353 (489)
.++++++.+.....+..+.. .+++...++.+...+..+.+. ......+++.+.+|.++.|++.|+...++.
T Consensus 290 ~d~~ll~~~~fl~~~~~~~~~~----~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~ 365 (509)
T KOG2504|consen 290 LDLSLLKDPKFLLLALSNLFAY----LGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL 365 (509)
T ss_pred hhHHHHcCchHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH
Confidence 35666655544444333322 223334455555555655543 456677889999999999999999884443
Q ss_pred --HHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHH
Q 011277 354 --LQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVI 431 (489)
Q Consensus 354 --~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~ 431 (489)
..++.+..+++........ .... .+...++++...+ ....+....+.|+.+.+.-+.+.|+...+..++
T Consensus 366 ~~~~~~ll~~gl~~~~~p~~~------~~~~--l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~ 436 (509)
T KOG2504|consen 366 VLFLLTLLIAGLARLFLPFAT------TYVG--LIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIG 436 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHhc------cHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHhHHH
Confidence 3333333333332211111 1111 1111111111111 112344457889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHH
Q 011277 432 NFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAV 463 (489)
Q Consensus 432 ~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~ 463 (489)
..++|.+.+.+.|..+ +...|.+.+.+.+++.
T Consensus 437 ~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~ 469 (509)
T KOG2504|consen 437 ALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSA 469 (509)
T ss_pred HHcCcccceeeeeccCCeeeehhhcChHHHHHH
Confidence 9999988888888777 5666777776665554
No 99
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.78 E-value=3.9e-16 Score=154.45 Aligned_cols=380 Identities=14% Similarity=0.131 Sum_probs=215.3
Q ss_pred ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh----hchhhHHHHHh-HHHHHHHHHHHhhcchHHHHH
Q 011277 71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAFQLC-ALPMIIGASISATTRNLIGML 145 (489)
Q Consensus 71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D----r~GRr~~~~~~-~~~~~i~~~l~~~~~~~~~l~ 145 (489)
.+.++.+.+++|.+. ...+++.....+...+.+++.|.++| |+|||+.+++. .+...++..+.+++++...++
T Consensus 24 ~~~l~~yl~~lg~~~--~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~ 101 (477)
T TIGR01301 24 LSLLTPYVQELGIPH--AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLF 101 (477)
T ss_pred HHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhc
Confidence 334445667788754 45577777888888899999999999 59999999875 455555556666666543211
Q ss_pred ------------HHHHHHh-----hhcccccccccccccccCCcccc--hhhhhHHHHHHHHHHHHHHHhhcccc--c--
Q 011277 146 ------------LGRFVVG-----TGMGLGPTVAALYVTEVSPPFVR--GTYGAFIQIATCLGLMGSLLIGIPVK--E-- 202 (489)
Q Consensus 146 ------------~~R~l~G-----~g~g~~~~~~~~~i~e~~~~~~R--g~~~~~~~~~~~~G~~~g~~~~~~l~--~-- 202 (489)
+.+++.| ++.....+...++++|.+|+++| +.+.++.+....+|..+|+.+|+... .
T Consensus 102 ~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~ 181 (477)
T TIGR01301 102 GDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF 181 (477)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 1233333 46666667788999999999876 57889888888999888888775421 0
Q ss_pred ------C----CchhHHHHHHHHHHHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCC
Q 011277 203 ------I----AGWWRICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD 271 (489)
Q Consensus 203 ------~----~~~wr~~f~~~~i~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (489)
. ...-|+.|++.++..++. .+..+..+|.|.. ..++.+ +++.++..+. +.
T Consensus 182 ~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~--~~~~~~--~~~~~~~~~~---------------~~ 242 (477)
T TIGR01301 182 PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLI--GSDDFI--NSEAAPPSKH---------------GE 242 (477)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCC--ccccch--hhhccccccc---------------ch
Confidence 0 113588888865544443 3445667886521 111100 0000000000 00
Q ss_pred CCcchhHHHhhh--ccchhHHHHHHHHHHHHhhhhHHHHHHhH----HHHHHhcCC-----Cc----c-hHHHHHHHHHH
Q 011277 272 DGDIVKFEELLY--GRHFRVVFIGSTLFALQQLSGINAIFYFS----SSVFKSAGL-----SS----G-LANVFVGIANL 335 (489)
Q Consensus 272 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~----~-~~~~~~~i~~~ 335 (489)
......+.+.++ .+.++.+...-++.++..+ ....|.. ..+|+.... +. | +..+..++...
T Consensus 243 ~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f---~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~ 319 (477)
T TIGR01301 243 EAFFGELFGAFKYLPRPVWILLLVTCLNWIAWF---PFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG 319 (477)
T ss_pred hhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH---HHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 000011111121 1223333322222222211 1122222 223321110 11 1 23445556666
Q ss_pred HHHHHHHHHhhhcCC-chhHHHhhHHHHHHHHHHHHHhhc-----c--------CCCchhhHHHHHHHHHHHHHHhcCcc
Q 011277 336 LGSVVAMVLMDKLGR-KALLQWSFFSMAVSMAIQVAASSS-----Y--------IPGSASLYLSVGGMLMFVLTFALGAG 401 (489)
Q Consensus 336 ~g~~~~g~l~dr~gr-r~~~~~~~~~~~i~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (489)
+.+++-.++.+|+|+ |+....+.++.++++......... . .+.....+..+......++.++. ..
T Consensus 320 i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~-~~ 398 (477)
T TIGR01301 320 ITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAI-TY 398 (477)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHH-HH
Confidence 777777888999985 666677777777776665433320 0 01111112222222333333322 23
Q ss_pred ccccccccccCCch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhhHHHHHHHHHHHHHHHhhcccCCC
Q 011277 402 PVPSLLLPEIFPSR--IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG--PQLLYSIFGTFCLMAVAFVKRNVVETKG 475 (489)
Q Consensus 402 ~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~et~~ 475 (489)
.++++++++..|++ ..|..+|+.|..-.+...+.....+.+.+..| ....+.+-++..+++.+...+.+|+++.
T Consensus 399 siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 399 SIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 57888888888854 44889999998888888877776666555555 3456666777778888888888998764
No 100
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.75 E-value=4.9e-15 Score=136.07 Aligned_cols=353 Identities=18% Similarity=0.224 Sum_probs=232.9
Q ss_pred hhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHH
Q 011277 63 FGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLI 142 (489)
Q Consensus 63 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~ 142 (489)
..-..+.+.+.++++..|+|.+.+ ..|+++++-.+.+++.+++..+|+.|+|.++.+..++++.++|..+-... +..
T Consensus 24 LR~~itsvgPLL~~Ir~~~gls~s--~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~ 100 (395)
T COG2807 24 LRPAITSVGPLLDEIRQDLGLSFS--VAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLP 100 (395)
T ss_pred cchhhhhhhhhHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHH
Confidence 333456788889999999999755 46899999999999999999999999999999999999999999998777 777
Q ss_pred HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH
Q 011277 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC 222 (489)
Q Consensus 143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~ 222 (489)
.++.+-.+.|.|.+......+..+.+.+|++ -+..+++|.+....|...++.+..++.++.+.||.....=..++++.+
T Consensus 101 ~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl 179 (395)
T COG2807 101 LLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLAL 179 (395)
T ss_pred HHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999876 688999999999999999998888888776446876655445565554
Q ss_pred HHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277 223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL 302 (489)
Q Consensus 223 ~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (489)
+.++ |... |++ .+. .+. +..+-..+++++.-+.+.+ .+.++.+
T Consensus 180 ~~Wl--Pq~~-----r~~-~~~-----------------------~~~---~~~~~~~vw~~~~aW~vtL---fmGlqS~ 222 (395)
T COG2807 180 LIWL--PQAL-----REQ-AAS-----------------------IAT---KLVSVRKVWRSPLAWQVTL---FMGLQSL 222 (395)
T ss_pred HHHh--hhcc-----ccc-ccc-----------------------ccc---ccccccccccCchhHHHHH---HHHhhHH
Confidence 4432 2211 110 000 000 0011122344443333322 2222322
Q ss_pred hhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhc-CCchhHHHhhHHHHHHHHHHHHHhhccCCC
Q 011277 303 SGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPG 378 (489)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 378 (489)
.++...-|.|.++.+.|.+. |.......+.+++.++....+.+|. .+|+........+.++.+.+.+.+.+
T Consensus 223 -~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~---- 297 (395)
T COG2807 223 -LYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQ---- 297 (395)
T ss_pred -HHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhh----
Confidence 23444557788888888774 4555566678888888888888875 45665555444455544443322211
Q ss_pred chhhHHHHHHHHHHHHHHhcCccccccc-cccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-chhhHHHH
Q 011277 379 SASLYLSVGGMLMFVLTFALGAGPVPSL-LLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP-QLLYSIFG 456 (489)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~ 456 (489)
....|. ++++.+.+ +..|+.-. .....-.++..+.-.|+.+.++++.+..+|.+++.+.|..|. ......++
T Consensus 298 ~~~lw~-----~llG~G~G-~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~ 371 (395)
T COG2807 298 LPILWA-----LLLGLGQG-GAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLA 371 (395)
T ss_pred HHHHHH-----HHHhCccc-hHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHH
Confidence 111221 11111100 00111111 122222457788889999999999999999999999998764 34444555
Q ss_pred HHHHHHHHHHH
Q 011277 457 TFCLMAVAFVK 467 (489)
Q Consensus 457 ~~~~~~~~~~~ 467 (489)
.+.+...+..+
T Consensus 372 ~~~i~m~i~Gl 382 (395)
T COG2807 372 LATLLMLIFGL 382 (395)
T ss_pred HHHHHHHHHHh
Confidence 55554444443
No 101
>PRK09669 putative symporter YagG; Provisional
Probab=99.74 E-value=7e-16 Score=154.93 Aligned_cols=330 Identities=14% Similarity=0.156 Sum_probs=184.8
Q ss_pred hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh----chhh-HHHHHhHHHHHHHHHHHhhcch------HHHH
Q 011277 76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRR-RAFQLCALPMIIGASISATTRN------LIGM 144 (489)
Q Consensus 76 ~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr----~GRr-~~~~~~~~~~~i~~~l~~~~~~------~~~l 144 (489)
.+.+++|++ ....|.+.....+..++..++.|.++|| +||| |.++.+.+..++...+....++ ...+
T Consensus 35 ~~t~~~gls--~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~ 112 (444)
T PRK09669 35 FYTDVFGLS--AAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA 112 (444)
T ss_pred HHHHhcCCC--HHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 345566776 4456888888998999999999999998 8885 4455666677666655544432 3455
Q ss_pred HHHHHHHhhhcccccccccccccccC-CcccchhhhhHHHHHHHHHHHHHHHhhcccc----c---CCchhHHHHHHHHH
Q 011277 145 LLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVK----E---IAGWWRICFWVSIV 216 (489)
Q Consensus 145 ~~~R~l~G~g~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~----~---~~~~wr~~f~~~~i 216 (489)
.+.-++.+.+.........++.+|+. ++++|.+..++......+|..+++.+..++. . ..+ |+..+.+.++
T Consensus 113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g-~~~~~~i~~i 191 (444)
T PRK09669 113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKG-YFYAMMVMGL 191 (444)
T ss_pred HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh-HHHHHHHHHH
Confidence 55666666665555555667889988 5688998888777776776555544322211 1 123 6766665444
Q ss_pred HHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011277 217 PAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST 295 (489)
Q Consensus 217 ~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (489)
...+..+. .+..+|.++ +++ +++......+++.+++++++......+
T Consensus 192 i~~v~~~~~~~~~~e~~~-------~~~-------------------------~~~~~~~~~~~~~~~n~~~~~l~~~~~ 239 (444)
T PRK09669 192 LGVVLFFCCFFMTKERYT-------PEV-------------------------DNSSSVWKDLKLLLGNSQWRIMFIFNV 239 (444)
T ss_pred HHHHHHHHHhCCeEEecC-------CCC-------------------------cCCCCHHHHHHHHhCCchHHHHHHHHH
Confidence 43333322 333333210 000 000001123455667777776655433
Q ss_pred HHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhcc
Q 011277 296 LFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSY 375 (489)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~ 375 (489)
+.............||..+..+... ..+.......+..+++.++.+++.||+|+|+....+.....+.........
T Consensus 240 ~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~--- 315 (444)
T PRK09669 240 VLLTAVVTRGGATLYYVNYVLLRPD-LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP--- 315 (444)
T ss_pred HHHHHHHHHhhhhheeeeeecCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC---
Confidence 3322221111122233322221100 112233344566778888899999999999988776554443322222111
Q ss_pred CCCchhhHHHHHHHHHHHHHHhcCccccccccccccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011277 376 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP 448 (489)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 448 (489)
++. .+......++..++.+ +..++.+.+.+|..+ .+..+...+..+.+..++..+++.+.+.+++..|+
T Consensus 316 -~~~--~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 316 -PSN--VWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred -cch--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 111 1111122222333322 234566777888775 23345667888888899999999888888876654
No 102
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.73 E-value=5.9e-15 Score=144.28 Aligned_cols=341 Identities=18% Similarity=0.186 Sum_probs=196.0
Q ss_pred ceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhch-hhHHHHHhHHHHHHHHHHHhhcchHHHHH
Q 011277 67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-RRRAFQLCALPMIIGASISATTRNLIGML 145 (489)
Q Consensus 67 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~G-Rr~~~~~~~~~~~i~~~l~~~~~~~~~l~ 145 (489)
.+...|.++.+.++.|++ ..|.|.+.+...+...++++++|.++||++ +|+++.++.++.++........++++.++
T Consensus 18 ~G~~~p~~~~~L~~~G~s--~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~ 95 (400)
T PF03825_consen 18 YGAFLPYLPLYLESRGFS--GTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLF 95 (400)
T ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 334556677788888876 446799999999999999999999999986 57777777777777666677788898888
Q ss_pred HHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHH-----HHhhcccccCCchhHHHHHHHHHHHHH
Q 011277 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGS-----LLIGIPVKEIAGWWRICFWVSIVPAAI 220 (489)
Q Consensus 146 ~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g-----~~~~~~l~~~~~~wr~~f~~~~i~~~~ 220 (489)
+.-++..+...+..+...++..+...++++ --+-+-+..++|..++ ..+.... +..+ ..+.+++.....++
T Consensus 96 ~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~--~YG~iRlwGSiGf~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~~~~~l 171 (400)
T PF03825_consen 96 VIMLLFSFFFSPTMPLSDSIALSYLGDRGK--DYGRIRLWGSIGFIVAALAFGGLLGGYL-GISG-TSLIFYIAAILSLL 171 (400)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHcccccC--CCCcchhhhhHHHHHHHHHHHHHHHhhh-cccc-ccHHHHHHHHHHHH
Confidence 877777777777777777777776653222 1122222223332222 1111111 1111 23345554444444
Q ss_pred HHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHH
Q 011277 221 LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300 (489)
Q Consensus 221 ~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (489)
.....+.+|++|. +++.++. .++....+..+++++|++...++..++....
T Consensus 172 l~~~~l~lp~~~~----~~~~~~~-------------------------~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~ 222 (400)
T PF03825_consen 172 LAGFALFLPKTPP----KRSAKES-------------------------VKKLLGLDALKLLKNPRFLVFLLAAFLIGIS 222 (400)
T ss_pred HHHHHHhCCCCcc----ccccCCC-------------------------cccccchHHHHHhcCccHHHHHHHHHHHHHH
Confidence 4444556777751 1110000 0000111234566666665554443333222
Q ss_pred hhhhHHHHHHhHHHHHHhcC-CCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccC
Q 011277 301 QLSGINAIFYFSSSVFKSAG-LSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI 376 (489)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~ 376 (489)
. .....|....+++.+ .+. +.......+.+++.-...+++..|+|.|+++.++.....+=..+......
T Consensus 223 ~----~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~--- 295 (400)
T PF03825_consen 223 H----AAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD--- 295 (400)
T ss_pred H----HHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 1 112223333445544 332 33333445677788888999999999999887776554443333332211
Q ss_pred CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCch
Q 011277 377 PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHW-VINFFVGLLFLRLLEQLGPQL 450 (489)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~g~~~ 450 (489)
+............++.+..|+... .....|+.|..|++.|++++++.+.+.+ +++.++..+.+.+++..|...
T Consensus 296 ~~~~~~~~~~l~q~lhG~tf~~~~-~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~ 369 (400)
T PF03825_consen 296 PWPFIVALQLLGQLLHGLTFGLFH-AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG 369 (400)
T ss_pred CcHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence 111111111111223344433221 2334589999999999999999887654 677777888888888877553
No 103
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.72 E-value=1.9e-14 Score=143.06 Aligned_cols=145 Identities=21% Similarity=0.226 Sum_probs=110.1
Q ss_pred eccchhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc-hhhHHHHHhHHHHHHHHHHHhhcc-hHHHHHH
Q 011277 70 VNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTR-NLIGMLL 146 (489)
Q Consensus 70 ~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-GRr~~~~~~~~~~~i~~~l~~~~~-~~~~l~~ 146 (489)
+...+|.+ .+++|++.+ +.+.+.+.+.....++++++|+++||+ |||+++.++.++..++.++.+... +...+.+
T Consensus 28 ~~~~L~~yL~~~lgls~~--~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l 105 (493)
T PRK15462 28 MRALLILYLTNQLKYDDN--HAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYL 105 (493)
T ss_pred HHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 33445544 445677643 456778888888889999999999999 999999999999999887776543 2233444
Q ss_pred HHHHHhhhcccccccccccccccCCcc--cchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHH
Q 011277 147 GRFVVGTGMGLGPTVAALYVTEVSPPF--VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP 217 (489)
Q Consensus 147 ~R~l~G~g~g~~~~~~~~~i~e~~~~~--~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~ 217 (489)
+-.+.++|.|...+....+++|.+|++ +|+...+++.....+|..++|.+...+.+..+ ||+.|+++++.
T Consensus 106 ~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~~~F~iaaig 177 (493)
T PRK15462 106 SLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WAMGFGLAAVG 177 (493)
T ss_pred HHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hHHHHHHHHHH
Confidence 444455666666666778899999976 69989999998889999999999888877667 69999876543
No 104
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.69 E-value=4.9e-14 Score=140.47 Aligned_cols=356 Identities=17% Similarity=0.211 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHH-HHHHHHHHHhhc-chHHH-HHHHHHHHhhhcccccccccccc
Q 011277 90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL-PMIIGASISATT-RNLIG-MLLGRFVVGTGMGLGPTVAALYV 166 (489)
Q Consensus 90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~-~~~i~~~l~~~~-~~~~~-l~~~R~l~G~g~g~~~~~~~~~i 166 (489)
.++..++..+-.++-.++.|.++|+-||||-++.... +..+++.+..+. ++.+. ..+.-++.-++.+.......+++
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777777889999999999998877765444 444455554443 33333 33344444456666677788899
Q ss_pred cccCCcccc--------------------------hhhhhHHHHHHHHHHHHHHHhhcccccCC------ch-hHHHHHH
Q 011277 167 TEVSPPFVR--------------------------GTYGAFIQIATCLGLMGSLLIGIPVKEIA------GW-WRICFWV 213 (489)
Q Consensus 167 ~e~~~~~~R--------------------------g~~~~~~~~~~~~G~~~g~~~~~~l~~~~------~~-wr~~f~~ 213 (489)
.|+.+++++ ++.++.-.....+|.++..++...+.... .+ -|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 999999888 88888766555566554444433221111 11 3666665
Q ss_pred HHHHHHHHH-HHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011277 214 SIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (489)
Q Consensus 214 ~~i~~~~~~-~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (489)
.++--+++. ...+++||.|+. + ..++..+.+ +...+++.+ .+++..+.|.....++
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~~---~-~~~~~~~~~---------~~g~~~l~~----------t~k~~~~~~~~~~fLi 288 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPGP---R-PLPSGSSYL---------RFGFKRLWR----------TFKEIRKLRQLFLFLI 288 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC---C-CCCcchhHH---------HHHHHHHHH----------HHHHHHhChHHHHHHH
Confidence 444433333 334556665431 0 000000000 011111110 1222222233333333
Q ss_pred HHHHHHHHhhhhHHHHHHhHH-HHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCc--hhHHHhhHHHHHHHH
Q 011277 293 GSTLFALQQLSGINAIFYFSS-SVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRK--ALLQWSFFSMAVSMA 366 (489)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr--~~~~~~~~~~~i~~~ 366 (489)
+.+++.- +.+.+..... ..-+..+++. ....+...+..++|+++.+++.||+|.| +++........+..+
T Consensus 289 a~~l~~d----g~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~ 364 (477)
T PF11700_consen 289 AYFLYSD----GVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL 364 (477)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 3333221 2222221111 1112344443 3455667788899999999999999998 776665544433222
Q ss_pred HHHH--Hhhcc-CCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 367 IQVA--ASSSY-IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL 443 (489)
Q Consensus 367 ~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~ 443 (489)
.... ..... .......++ .. . ..+. +..+..+....+.+|+.|+++.+.-.|+....++..++++|++++.+.
T Consensus 365 ~g~~G~~~~~~g~~~~~~f~~-~a-~-~~G~-~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~ 440 (477)
T PF11700_consen 365 YGLFGFWPSFFGLKSPWEFWV-LA-V-LIGL-FMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLIT 440 (477)
T ss_pred HHHHHhhhcccCcccHHHHHH-HH-H-HHHH-HhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 11100 111112121 11 1 1111 111234566778999999999999999999999999999999999888
Q ss_pred HHhC-CchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011277 444 EQLG-PQLLYSIFGTFCLMAVAFVKRNVVETKGKS 477 (489)
Q Consensus 444 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 477 (489)
+..+ .+..+....++.+++.+++ ..+++.|+|.
T Consensus 441 ~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~~ 474 (477)
T PF11700_consen 441 DATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGRE 474 (477)
T ss_pred HHhCCchhHHHHHHHHHHHHHHHH-hhccchhhhh
Confidence 8776 4566666666666666655 5677777764
No 105
>PRK09848 glucuronide transporter; Provisional
Probab=99.69 E-value=1.1e-14 Score=146.52 Aligned_cols=328 Identities=15% Similarity=0.154 Sum_probs=174.8
Q ss_pred hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc----hhhHHH-HHhHHHHHHHHHHHh-h----cch--HHH
Q 011277 76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV----GRRRAF-QLCALPMIIGASISA-T----TRN--LIG 143 (489)
Q Consensus 76 ~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~----GRr~~~-~~~~~~~~i~~~l~~-~----~~~--~~~ 143 (489)
.+.+.+|++ ..+.|.+.+...+..++..++.|.++||. |||+.+ ..+.+...+..++.. . +.+ ...
T Consensus 34 y~~~~~gl~--~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (448)
T PRK09848 34 YYTDVAGVG--AAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY 111 (448)
T ss_pred HHHHHcCCC--HHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence 344555765 45678999999999999999999999986 877765 455554444444432 1 111 222
Q ss_pred HHHHHHHHhhhcccccccccccccccCC-cccchhhhhHHHHHH-----HHHHHHHHHhhcccccC-C-ch--hHHHHHH
Q 011277 144 MLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIAT-----CLGLMGSLLIGIPVKEI-A-GW--WRICFWV 213 (489)
Q Consensus 144 l~~~R~l~G~g~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~-----~~G~~~g~~~~~~l~~~-~-~~--wr~~f~~ 213 (489)
.++.-++.+++.+...+...++..|..+ +++|.+..++-..+. .++...+|+++...... . ++ |+..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~-- 189 (448)
T PRK09848 112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVL-- 189 (448)
T ss_pred HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH--
Confidence 3444566677776666555566666664 467888766654432 23445555554332111 1 11 33222
Q ss_pred HHHHHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011277 214 SIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (489)
Q Consensus 214 ~~i~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (489)
.+...+. .+.....+|++. + +. ++......++.++++|++.....
T Consensus 190 -~v~~~~~~~~~~~~~~e~~~----~-~~----------------------------~~~~~~~~~~~l~~n~~f~~~~~ 235 (448)
T PRK09848 190 -AIAGMVLYFICFKSTRENVV----R-IV----------------------------AQPSLKISLQTLKRNRPLFMLCI 235 (448)
T ss_pred -HHHHHHHHHHHHcCcEeccC----C-Cc----------------------------cCCCHHHHHHHHhCCchHHHHHH
Confidence 1222222 222233444321 0 00 00001122455667777766554
Q ss_pred HHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHh
Q 011277 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS 372 (489)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~ 372 (489)
..++............++|..+.++......++......++.+++.++.+++.||+|+|+.+..+..+..++...+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~- 314 (448)
T PRK09848 236 GALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV- 314 (448)
T ss_pred HHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-
Confidence 4444333222212222333332222111111222233345677788899999999999999888877666655444321
Q ss_pred hccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCc-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 373 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPS-------RIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ 445 (489)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (489)
+. ...+......++..++.... .+......+|..|. +.++...|+.+....++..+++.+.+.+++.
T Consensus 315 ----~~-~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 315 ----SV-WSLPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred ----Cc-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111122222222322222 23344566666653 3468899999999999999999888777765
Q ss_pred hCC
Q 011277 446 LGP 448 (489)
Q Consensus 446 ~g~ 448 (489)
.|+
T Consensus 389 ~G~ 391 (448)
T PRK09848 389 SGY 391 (448)
T ss_pred cCC
Confidence 553
No 106
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.68 E-value=3.8e-15 Score=150.67 Aligned_cols=335 Identities=12% Similarity=0.048 Sum_probs=176.8
Q ss_pred hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh----hchh-hHHHHHhHHHHHHHHHHHhhcch------HHHHHHH
Q 011277 79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGR-RRAFQLCALPMIIGASISATTRN------LIGMLLG 147 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D----r~GR-r~~~~~~~~~~~i~~~l~~~~~~------~~~l~~~ 147 (489)
+.+|++ ....|.+..+.-+-.++..++.|.++| |+|| ||.++.+.+..+++..+....++ +..+++.
T Consensus 35 ~v~Gls--~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~ 112 (473)
T PRK10429 35 DVVGLS--VGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVT 112 (473)
T ss_pred HhcCCC--HHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 344665 445677888888888899999999999 6799 55566677777766555543221 3345555
Q ss_pred HHHHhhhcccccccccccccccC-CcccchhhhhHHHHHHHHHHHHHHHhhccc----c---cCCchhHHHHHHHHHHHH
Q 011277 148 RFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPV----K---EIAGWWRICFWVSIVPAA 219 (489)
Q Consensus 148 R~l~G~g~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l----~---~~~~~wr~~f~~~~i~~~ 219 (489)
-++.+++.........++..|+. ++++|.+..++-.....+|..+.+.+..++ . +..+ |++..++.++..+
T Consensus 113 ~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~i~~~~~~ 191 (473)
T PRK10429 113 YILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFG-FQMFTLVLIAFFI 191 (473)
T ss_pred HHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh-HHHHHHHHHHHHH
Confidence 66667776666667777889999 689999988885555555433322222111 1 1112 4665554433333
Q ss_pred HHH-HHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHH
Q 011277 220 ILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFA 298 (489)
Q Consensus 220 ~~~-~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (489)
+.. +..+..+|.++. .+.++ .++++......++.++++++++..+...++..
T Consensus 192 ~~~~~~~~~~~e~~~~----~~~~~-----------------------~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~ 244 (473)
T PRK10429 192 VSTIITLRNVHEVYSS----DNQVS-----------------------AEGSHLTLKDIVALIYKNDQLSCLLGMALAYN 244 (473)
T ss_pred HHHHHHHcCceecCCc----ccccc-----------------------ccccCCCHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 322 223334553210 00000 00000001112333455666655544433332
Q ss_pred HHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCC
Q 011277 299 LQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG 378 (489)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 378 (489)
...........||..+..+. ....+.......++.+++.++.+++.||+|+|+.+..+.....++.+....... ..+.
T Consensus 245 ~~~~~~~~~~~y~~~y~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~-~~~~ 322 (473)
T PRK10429 245 IASNIINGFAIYYFTYVIGD-ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL-AAPH 322 (473)
T ss_pred HHHHHHhhheeeEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-cCch
Confidence 22111111112222211111 001123334445777888889999999999999887776554444433322110 1111
Q ss_pred chhhHHHHHHHHHHHHHHhcCccccccccccccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011277 379 SASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP 448 (489)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 448 (489)
. .+..+...++..++.+. ..+....+.+|..+ .+..|...+....+..++..+++.+.+.+++..|+
T Consensus 323 ~--~~~~~i~~~l~g~~~~~-~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 323 N--ALLIVIAGILLNIGTAL-FWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred h--HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1 11111112222222221 22344557777744 33345567888888999999999888887776553
No 107
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.67 E-value=3.4e-14 Score=142.01 Aligned_cols=331 Identities=16% Similarity=0.185 Sum_probs=209.2
Q ss_pred hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh----hchhhHHHH-HhHHHHHHHHHHHhhc-c-------hHHH
Q 011277 77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAFQ-LCALPMIIGASISATT-R-------NLIG 143 (489)
Q Consensus 77 i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D----r~GRr~~~~-~~~~~~~i~~~l~~~~-~-------~~~~ 143 (489)
+.+.++++. ...|++....-+-.++-.++.|.++| |+|||+.++ .+.+..+++.++.... + ....
T Consensus 28 ~~~~~gl~~--~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~ 105 (428)
T PF13347_consen 28 YTDVLGLSP--ALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVW 105 (428)
T ss_pred HHHHcCCCH--HHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHH
Confidence 344446653 34566666666677788889999999 899877765 5667777777666655 3 2334
Q ss_pred HHHHHHHHhhhcccccccccccccccCC-cccchhhhhHHHHHHHHHHHHHHHhhcccccCCc------hhHHHHHHHHH
Q 011277 144 MLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------WWRICFWVSIV 216 (489)
Q Consensus 144 l~~~R~l~G~g~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~------~wr~~f~~~~i 216 (489)
+.+.-++..++.........++..|..+ +++|.+..+.-.....+|.++...+...+.+..+ .|++..++.++
T Consensus 106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~i 185 (428)
T PF13347_consen 106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAI 185 (428)
T ss_pred HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHH
Confidence 5666777788888888888889999998 5789999999888888887544444333221111 36887776555
Q ss_pred HHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011277 217 PAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST 295 (489)
Q Consensus 217 ~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (489)
..++..+. .+..+|.+ ++.++ ++++.+-...++..+++|+++......+
T Consensus 186 v~~v~~~i~~~~~ke~~------~~~~~------------------------~~~~~~~~~~~~~~~~nr~~~~l~~~~~ 235 (428)
T PF13347_consen 186 VGLVFFLITFFFVKERS------VEVTE------------------------QEKKISLRDSLRSLFRNRPFRILLLAFF 235 (428)
T ss_pred HHHHHhhhhhheeeecc------ccccc------------------------cccccccccchhhhcccchHHHHHHHHH
Confidence 55444333 34455510 00000 0011112234566777888887776665
Q ss_pred HHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhcc
Q 011277 296 LFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSY 375 (489)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~ 375 (489)
+..+..........||..+..+..+ ..+.......++.+++.++.++++||+|+|+....+..+..++.........
T Consensus 236 ~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-- 312 (428)
T PF13347_consen 236 LQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP-- 312 (428)
T ss_pred HHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh--
Confidence 5544443333344566655555442 2344556677888899999999999999999998888877777666554431
Q ss_pred CCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCc-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277 376 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPS-------RIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 447 (489)
+. .+.......+.+++.+. ....++.+.+|+.+. +..|...|+.+....++..+++.+...+++..|
T Consensus 313 --~~--~~~~~i~~~l~gi~~~~-~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 313 --GS--PWLVLILFILAGIGYGA-FFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred --hh--HHHHHHHHHHhHhhhcc-cccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 11 11112222222333222 235667788888763 446888888899999999999988777776554
No 108
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.64 E-value=4.6e-13 Score=126.63 Aligned_cols=398 Identities=14% Similarity=0.118 Sum_probs=236.8
Q ss_pred CCcchHHHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHH
Q 011277 44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL 123 (489)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~ 123 (489)
+.+++.|..++++++-++..+...-.+.+....+..-++ +.+ ..-|..-+|.+-+..-.+..-|+.|++|-|..+++
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~--~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll 114 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSS--AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL 114 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chH--HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence 356666666666676666665554444444444444455 322 23477778888888888999999999999999999
Q ss_pred hHHHHHHHHHHHhhcc------hHH--HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHH
Q 011277 124 CALPMIIGASISATTR------NLI--GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL 195 (489)
Q Consensus 124 ~~~~~~i~~~l~~~~~------~~~--~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~ 195 (489)
+..+.++|+.+-..+. .++ ....+..+.+.+.-........+..-|+|+++|..+..+-.+++.+|...+.+
T Consensus 115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l 194 (480)
T KOG2563|consen 115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL 194 (480)
T ss_pred HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence 9999999999876553 334 56678888888776666666678888999999999999888888888877777
Q ss_pred hhcccccCC----c-hhHH--HHHH-HHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhh
Q 011277 196 IGIPVKEIA----G-WWRI--CFWV-SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKL 267 (489)
Q Consensus 196 ~~~~l~~~~----~-~wr~--~f~~-~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (489)
+...+.... + .|.. +|+. .++..+.+.+..+..+|.|+. .+..+....
T Consensus 195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t-----Pps~s~~~~------------------- 250 (480)
T KOG2563|consen 195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT-----PPSASQAAL------------------- 250 (480)
T ss_pred ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-----CCchhHhhh-------------------
Confidence 765443222 1 1433 2332 222222222223333443321 111100000
Q ss_pred ccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHH---hcCCCcchHHHHHHHHHHHHHHHHHHH
Q 011277 268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK---SAGLSSGLANVFVGIANLLGSVVAMVL 344 (489)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~g~~~~g~l 344 (489)
+ +..-..+.++.++++++.........- ...++..++.....+. ..+...|.......++..+++.+.|.+
T Consensus 251 -~-~~~f~~si~~~~~n~~F~il~~~ygi~----~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii 324 (480)
T KOG2563|consen 251 -Q-DASFPKSIKSCFKNRQFIILAICYGIG----LGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGII 324 (480)
T ss_pred -h-cCcHHHHHHHHHcCccHHHHHHHHhhh----HHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhh
Confidence 0 111233566778888776554332221 1112222222221222 233457888888889999999999999
Q ss_pred hhhcCCch-hHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHH
Q 011277 345 MDKLGRKA-LLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV 423 (489)
Q Consensus 345 ~dr~grr~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 423 (489)
.||.+.-+ ..........++. +...............+. .......+..+..|+...+..|.-=+..=++..|+
T Consensus 325 ~Dktk~fk~~~~v~~~~~~v~~-~~l~~~t~~~~~~viv~~----t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGl 399 (480)
T KOG2563|consen 325 ADKTKKFKLTTLVLYLFALVGT-LMLLTCTLFLGDSVIVFT----TCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGL 399 (480)
T ss_pred hhhhhhHHHHHHHHHHHHHHHH-HHHHHhhccCCceEehhh----hHHHHHHhhcCCCCcceeeeeeeccccCCccccee
Confidence 99987633 3333333333332 111111111111111111 11112234556778888888887766778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC----CchhhHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 011277 424 CMSVHWVINFFVGLLFLRLLEQLG----PQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQ 479 (489)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~ 479 (489)
.+..+.+.+++..+......+..+ +...-..+...++....+..+..|+-|++..|
T Consensus 400 l~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e 459 (480)
T KOG2563|consen 400 LNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRAE 459 (480)
T ss_pred EEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhhh
Confidence 999999988888888777766665 33334455566666666665556655555444
No 109
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.63 E-value=9.5e-15 Score=128.87 Aligned_cols=358 Identities=18% Similarity=0.137 Sum_probs=191.5
Q ss_pred hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh-chhhHHHHHhHHHHHHHHHHHh---hcchHHHHHHHHHHH
Q 011277 76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISA---TTRNLIGMLLGRFVV 151 (489)
Q Consensus 76 ~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~---~~~~~~~l~~~R~l~ 151 (489)
++..|.+++. .+..++-+.|.+-..+-++++|++.|| +|-|..-++-+....+|.++.+ .++.+|.+.++|++-
T Consensus 69 ~fk~d~ni~~--akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~F 146 (459)
T KOG4686|consen 69 DFKLDSNIEY--AKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLF 146 (459)
T ss_pred hhhcccccce--eeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheee
Confidence 3344444433 334577888888888999999999995 7877655555555556666654 578999999999999
Q ss_pred hhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH--HHHHHHHHHHHHHhhhcc
Q 011277 152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF--WVSIVPAAILCLAMVFCA 229 (489)
Q Consensus 152 G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f--~~~~i~~~~~~~~~~~~~ 229 (489)
|+|.-........|+.-|+..+|.+.++++.....-+|...-..+..++.+..+ .+| ..--..++.+.+-.....
T Consensus 147 GIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~---~~~~~~ghT~LG~~l~~~~~tc~ 223 (459)
T KOG4686|consen 147 GIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG---RMFPGVGHTLLGLWLCFEVKTCK 223 (459)
T ss_pred ccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH---HhcccchHHHHHHHHHHHHHHHH
Confidence 999877777888999999999999999998877777764322222111111000 000 000000000000000000
Q ss_pred CChHHHHhcC-CHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhh-hccchhHHHHHHHHHHHHhhhhHHH
Q 011277 230 ESPHWLYKKG-RTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL-YGRHFRVVFIGSTLFALQQLSGINA 307 (489)
Q Consensus 230 Esp~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (489)
.|-......+ .++++++.+.+ +++...+..+..+.. ..++++.+...++++....+-.+..
T Consensus 224 ~slical~lg~~D~rAerilh~-----------------e~g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~l 286 (459)
T KOG4686|consen 224 QSLICALSLGLSDDRAERILHL-----------------EEGFLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITL 286 (459)
T ss_pred HHHHHHHHhhhhhhHHHHHHhh-----------------hcCcccCCcccccccccCccHHHHHHHHHHHHHHHHHHhhh
Confidence 0000000011 11222222211 111111112222211 2356666665555554433322222
Q ss_pred HHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHH-HHHHHHHHHhhccCCCchhhHHHH
Q 011277 308 IFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA-VSMAIQVAASSSYIPGSASLYLSV 386 (489)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
-..+.+.-++.+..+++...........+.+.+.|.++||+|++.....+..... ++...+.+. ....+..
T Consensus 287 g~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft-------~lsPy~~- 358 (459)
T KOG4686|consen 287 GPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT-------FLSPYTS- 358 (459)
T ss_pred hHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh-------hccHHHH-
Confidence 2223333333333334544455556667788889999999999876654433222 222222111 1122222
Q ss_pred HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C---chhhHHHHHHHHHH
Q 011277 387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-P---QLLYSIFGTFCLMA 462 (489)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~---~~~~~~~~~~~~~~ 462 (489)
+.+.+..+++-.. ..|..++-+.|++.-+++.|++.++.+++-.+.|.+.+.+.|+-| + ...|...+.+++..
T Consensus 359 --m~~lGLsysllAc-slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~s 435 (459)
T KOG4686|consen 359 --MTFLGLSYSLLAC-SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTS 435 (459)
T ss_pred --HHHHhhhHHHHHH-HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHH
Confidence 2222333322111 123456677899999999999999999999999988777766544 2 23344445555555
Q ss_pred HHHH
Q 011277 463 VAFV 466 (489)
Q Consensus 463 ~~~~ 466 (489)
...+
T Consensus 436 vgil 439 (459)
T KOG4686|consen 436 VGIL 439 (459)
T ss_pred HHHH
Confidence 4443
No 110
>PRK11462 putative transporter; Provisional
Probab=99.63 E-value=1.7e-13 Score=137.65 Aligned_cols=325 Identities=15% Similarity=0.101 Sum_probs=174.4
Q ss_pred hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh----chhhHHHH-HhHHHHHHHHHHHhhcch------HHHHHHH
Q 011277 79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRAFQ-LCALPMIIGASISATTRN------LIGMLLG 147 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr----~GRr~~~~-~~~~~~~i~~~l~~~~~~------~~~l~~~ 147 (489)
..+|++ ....|.+..+.-+--++..++.|.++|| +|||+.++ ++.+.++++.++.-..++ ...+.+.
T Consensus 38 ~~~Gl~--~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~ 115 (460)
T PRK11462 38 DIFGIP--AGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAIT 115 (460)
T ss_pred HhhCCC--HHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Confidence 344554 4445666666667778999999999995 79977665 455666666665544432 3334455
Q ss_pred HHHHhhhcccccccccccccccCC-cccchhhhhHHHHHHHHHHHHHHHhhcccccC-------CchhHHHHHHHHHHHH
Q 011277 148 RFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-------AGWWRICFWVSIVPAA 219 (489)
Q Consensus 148 R~l~G~g~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~~~wr~~f~~~~i~~~ 219 (489)
-++..++.........++..|..+ ++||.+.+++...+..+|..+++++..++.+. .+ |+....+.+++.+
T Consensus 116 ~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g-~~~~~~i~~ii~~ 194 (460)
T PRK11462 116 YTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLG-FQGGIAVLSVVAF 194 (460)
T ss_pred HHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh-HHHHHHHHHHHHH
Confidence 555666666666667778899987 78999999999888888766555543332111 13 4555544434333
Q ss_pred HHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHH
Q 011277 220 ILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFA 298 (489)
Q Consensus 220 ~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (489)
+..+. ....+|.++ .+.+ +......++..+++++++.......+..
T Consensus 195 i~~~i~~~~~kE~~~-----~~~~----------------------------~~~~~~~l~~~~~Nk~~~~l~~~~~~~~ 241 (460)
T PRK11462 195 MMLAFCFFTTKERVE-----APPT----------------------------TTSMREDLRDIWQNDQWRIVGLLTIFNI 241 (460)
T ss_pred HHHHHHHhcceeccC-----CCcc----------------------------CCCHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 33322 222333210 0000 0000112344556677665544333332
Q ss_pred HHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCC
Q 011277 299 LQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG 378 (489)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 378 (489)
...........||..+.++... ..+.......++.+++.++++++.||+++|+....+.....+...+..... ..
T Consensus 242 ~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~----~~ 316 (460)
T PRK11462 242 LAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP----MQ 316 (460)
T ss_pred HHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc----hh
Confidence 2222212223344433332211 112344556678888999999999999999876544433333222221111 11
Q ss_pred chhhHHHHHHHHHHHHHHhcCccccccccccccCC-----chhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277 379 SASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-----SRIRAKAM--AVCMSVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~~~r~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~g 447 (489)
..... . ...++..++. ....++.+.+.+|... +..|..+. +....+.+++..+++.+.+.+++..|
T Consensus 317 ~~~~~-~-~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 317 ASITM-F-VFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HHHHH-H-HHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11111 1 1111122221 1123344555665543 33555554 55568899999998888777776544
No 111
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.63 E-value=2.1e-15 Score=153.22 Aligned_cols=179 Identities=16% Similarity=0.105 Sum_probs=127.9
Q ss_pred ccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH---HhhcchHHHHHH
Q 011277 71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGMLL 146 (489)
Q Consensus 71 ~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l---~~~~~~~~~l~~ 146 (489)
...+|.+. +++|++.+ +.++..+...++..++.++.|+++||+|||+++..+.++..++... ...+++...+++
T Consensus 270 ~~~~p~~l~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (490)
T PRK10642 270 LTYMPSYLSHNLHYSED--HGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFA 347 (490)
T ss_pred HHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 33556655 45676543 3456677788899999999999999999999988877655443332 223456777888
Q ss_pred HHHHHhhhcccccccccccccccCCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHh
Q 011277 147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225 (489)
Q Consensus 147 ~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~ 225 (489)
+|++.|++.+........++.|.+|++.||+..++ ++++...|.+.+.+.+ .+.+..++|+.+++...++.++..+..
T Consensus 348 ~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g-~l~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (490)
T PRK10642 348 GLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAA-WLVESTQNLMMPAYYLMVVAVIGLITG 426 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 99999987776666677788999999999998886 6666655554444444 333333346777666556666666666
Q ss_pred hhccCChHHHHhc-----CCHHHHHHHHHHHh
Q 011277 226 VFCAESPHWLYKK-----GRTAEAEAEFEKLL 252 (489)
Q Consensus 226 ~~~~Esp~~l~~~-----~~~~~~~~~~~~~~ 252 (489)
+++||||+|+..+ +|.+|+++.+++++
T Consensus 427 ~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 427 VTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 7789999998754 88888888888775
No 112
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.58 E-value=1.7e-13 Score=130.17 Aligned_cols=275 Identities=17% Similarity=0.152 Sum_probs=161.3
Q ss_pred HhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC-----------
Q 011277 135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI----------- 203 (489)
Q Consensus 135 ~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~----------- 203 (489)
++...+|+.++++-++.|.|.+...+....+++++.|++++++.+++.+..+.+|..++|+++..+...
T Consensus 4 ~~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~ 83 (310)
T TIGR01272 4 AASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVAT 83 (310)
T ss_pred hHHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhh
Confidence 345678999999999999999999999999999999999999999999999999999999987754311
Q ss_pred ----CchhHHHHHHHHHHHHHHHHHhhh--ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchh
Q 011277 204 ----AGWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVK 277 (489)
Q Consensus 204 ----~~~wr~~f~~~~i~~~~~~~~~~~--~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (489)
..+|+++|++.+....+..+.+.+ .||.. + ++.++. .+.+.. +
T Consensus 84 ~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~------~--~~~~~~--------------------~~~~~~---~ 132 (310)
T TIGR01272 84 ANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQ------E--ADVARV--------------------SSGDTT---Q 132 (310)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC------c--cccccc--------------------cccccc---c
Confidence 135899988543333333233222 34431 0 000000 000000 0
Q ss_pred HHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh---cCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011277 278 FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS---AGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRK 351 (489)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr 351 (489)
.++.+++++.....+..+++..... ....|.+..+.+ .+.+ .+........+..+|.++++++.||+|+|
T Consensus 133 ~~~~~~~~~~~l~~~~~f~yvg~e~----~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~ 208 (310)
T TIGR01272 133 KTSAFQFTHLVLGALGIFVYVGAEV----SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG 208 (310)
T ss_pred hhhHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 1122333343332222222221111 222223333322 2333 24555666788889999999999999999
Q ss_pred hhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHH
Q 011277 352 ALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVI 431 (489)
Q Consensus 352 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~ 431 (489)
+.+..+..+..+...+.... +.....+ .....+++.+ ...|.......+.+|+ ..+++.++. ..+.+|
T Consensus 209 ~~l~~~~~l~~~~~~l~~~~-----~~~~~~~----~~~l~g~~~s-~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~G 276 (310)
T TIGR01272 209 RYLAFNAFLAVLLSIGAALT-----HGYVAMW----FVLALGLFNS-IMFPTIFSLALNALGR-HTSQGSGIL-CLAIVG 276 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----CCHHHHH----HHHHHHHHHH-HHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhc
Confidence 88776655555443322211 1111111 1112222211 1234444456666664 345666664 677889
Q ss_pred HHHHHHHHHHHHHHhCCchhhHHHH
Q 011277 432 NFFVGLLFLRLLEQLGPQLLYSIFG 456 (489)
Q Consensus 432 ~~~~~~~~~~l~~~~g~~~~~~~~~ 456 (489)
+.+.|.+.+.+.|..|...+|.+..
T Consensus 277 g~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 277 GAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred chHHHHHHHHHHHhccchHHHHHHH
Confidence 9999998888888888777665433
No 113
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.56 E-value=4.8e-14 Score=135.46 Aligned_cols=370 Identities=18% Similarity=0.172 Sum_probs=183.2
Q ss_pred ceeeccchhhhhhh-cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHH--HHHHHH-hh----c
Q 011277 67 LGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI--IGASIS-AT----T 138 (489)
Q Consensus 67 ~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~--i~~~l~-~~----~ 138 (489)
.++..+..+...++ .|++.+ +.|.+.+...+...+.+++.|.++||.|.||-++....... .+.+.. .. .
T Consensus 23 ~gi~~pF~~iWL~~~~GLs~~--~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~ 100 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQVAGLSGT--EIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ 100 (412)
T ss_dssp HHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCHH--HHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554 677644 57999999999999999999999999997665544332221 122211 11 1
Q ss_pred chHH-HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHH
Q 011277 139 RNLI-GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP 217 (489)
Q Consensus 139 ~~~~-~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~ 217 (489)
.|.. ..+++-+..|+...+..++.-+|+.+....+ +.=-+-.-+..++|.+++..+++.+.+.. -+..||+....
T Consensus 101 ~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~--~feYG~~R~wGSig~ai~s~~~G~L~~i~--p~~~fwi~s~~ 176 (412)
T PF01306_consen 101 SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRN--GFEYGRARMWGSIGFAIASLLAGILFNIN--PNIIFWIASAA 176 (412)
T ss_dssp TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHh--cCCcchHHHHhhHHHHHHHHHhheeeeeC--ccHHHHHHHHH
Confidence 2221 2222222333333333344444433332111 11112223444555555555544443321 36677876554
Q ss_pred HHHHHHHhhh-ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHH
Q 011277 218 AAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296 (489)
Q Consensus 218 ~~~~~~~~~~-~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (489)
+++..++.++ -|+.++.....+. + ..+.++.+.....++++.|+++...+....
T Consensus 177 ~~il~lll~~~~~~~~~~~~~~~~-~------------------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g 231 (412)
T PF01306_consen 177 AIILLLLLLLLKPDVPPQAEVADA-L------------------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIG 231 (412)
T ss_dssp HHHHHHHHHSS---SSSSS-SSTT-S------------------------SS------HHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCchhhhhhcc-c------------------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHH
Confidence 4444444333 2332210000000 0 000000111223456666766654432221
Q ss_pred HHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhh
Q 011277 297 FALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS 373 (489)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~ 373 (489)
........-.....|....++..+.+ .|.....--+.+.+.-.+..++.+|+|.|+.++++...+.+=........
T Consensus 232 ~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~- 310 (412)
T PF01306_consen 232 VAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT- 310 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc-
Confidence 11110000001111111111111111 23344445567778888899999999999988777665554433332211
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCchhh
Q 011277 374 SYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCM-SVHWVINFFVGLLFLRLLEQLGPQLLY 452 (489)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~ 452 (489)
+ .+.....-++-+..+.+..-+. .-|+++.+|++..++.+.+.. ....++..+.+...+.++|+.|...+|
T Consensus 311 ----~---~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~ty 382 (412)
T PF01306_consen 311 ----N---PWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTY 382 (412)
T ss_dssp ----S---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----c---hHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHH
Confidence 1 1111222222222222211112 238899999999999999874 556677888888889999999988899
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCC
Q 011277 453 SIFGTFCLMAVAFVKRNVVETKGK 476 (489)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~et~~~ 476 (489)
.+++.+.+...++..+.+++.|..
T Consensus 383 limg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 383 LIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHHHHHHHHHHS--SSST
T ss_pred HHHHHHHHHHHHHheeeecCCCcc
Confidence 999998888777777777765553
No 114
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.56 E-value=3e-12 Score=124.35 Aligned_cols=330 Identities=19% Similarity=0.190 Sum_probs=195.5
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh----chhhHHH-HHhHHHHHHHHHHHhhcch------HHHHHHHHH
Q 011277 81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRAF-QLCALPMIIGASISATTRN------LIGMLLGRF 149 (489)
Q Consensus 81 ~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr----~GRr~~~-~~~~~~~~i~~~l~~~~~~------~~~l~~~R~ 149 (489)
+|++ ....|.+..+.-+--++..++.|.++|| +||||.+ +++.+.+++.+.++-.+++ .....+.-+
T Consensus 43 ~Gis--~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~ 120 (467)
T COG2211 43 FGLS--AALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYM 120 (467)
T ss_pred cCCc--HHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHH
Confidence 3454 3334555555555567999999999994 8876665 5666888888888877663 334556677
Q ss_pred HHhhhcccccccccccccccCC-cccchhhhhHHHHHHHHHHHHH-----HHhhccccc--CCchhHHHHHHHHHHHHHH
Q 011277 150 VVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGS-----LLIGIPVKE--IAGWWRICFWVSIVPAAIL 221 (489)
Q Consensus 150 l~G~g~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~~G~~~g-----~~~~~~l~~--~~~~wr~~f~~~~i~~~~~ 221 (489)
+.+++.........++..|+.+ ++||.+..++-..+..+|.++. |++...-.+ ..| |+..-++..+.+++.
T Consensus 121 l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g-~~~~~~~~~vi~~i~ 199 (467)
T COG2211 121 LLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALG-YQGTALVLGVIGVIL 199 (467)
T ss_pred HHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh-HHHHHHHHHHHHHHH
Confidence 8888887777777788888885 6889999999888888875433 333322222 223 455544443444433
Q ss_pred HHHhh-hccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHH
Q 011277 222 CLAMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300 (489)
Q Consensus 222 ~~~~~-~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (489)
.+..+ -..| |..+.... + +..+......+...+++|+++.......+....
T Consensus 200 ~l~~~~~v~E---------R~~~~~~~------~-------------~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~ 251 (467)
T COG2211 200 LLFCFFNVKE---------RVVETQPT------K-------------TGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIA 251 (467)
T ss_pred HHHHHHHhhc---------ccCccccC------c-------------ccccccHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 33332 2222 22110000 0 000001111234566778877766533333222
Q ss_pred hhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCch
Q 011277 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA 380 (489)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 380 (489)
...-.....||....++...............+.+.+.++..++.+|+|+|++..++.++..++..+...... +
T Consensus 252 ~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~----~-- 325 (467)
T COG2211 252 FNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA----G-- 325 (467)
T ss_pred HHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC----c--
Confidence 2211223345554444443333445556666777777889999999999999999988877777766654431 1
Q ss_pred hhHHHHHHHHHHHHHHhcCccccccccccccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011277 381 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP 448 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 448 (489)
...+.+...+...++.+ ...++++.+.+|... .+.-|...+...++..++..+++++.+..+...|+
T Consensus 326 ~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 326 SVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred chHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 11222222222223222 346788888887753 33446667778888999999999888877776653
No 115
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.51 E-value=5.8e-13 Score=129.55 Aligned_cols=146 Identities=23% Similarity=0.223 Sum_probs=119.4
Q ss_pred HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchh-hHHHHHhHHHHHH
Q 011277 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPMII 130 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GR-r~~~~~~~~~~~i 130 (489)
.+.+..+.+++.+.+.+++.+......++++.+.+....|++.+...+|..++++.+|..+.|.|. |+.++.+.++..+
T Consensus 35 si~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~ 114 (488)
T KOG2325|consen 35 SIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAII 114 (488)
T ss_pred hHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHH
Confidence 356667778888889998888877777776666555567999999999999999999999999995 6667788889999
Q ss_pred HHHHH-hh---cc-hHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhc
Q 011277 131 GASIS-AT---TR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI 198 (489)
Q Consensus 131 ~~~l~-~~---~~-~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~ 198 (489)
|+++. +. .+ .-+.++++|++.|+|.|.. .....|+++-...++|-++.+....+..+|..+||.++.
T Consensus 115 g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~ 186 (488)
T KOG2325|consen 115 GNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQL 186 (488)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHH
Confidence 99887 32 23 5678899999999997765 477789999999999999999888877777777777654
No 116
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.47 E-value=4e-11 Score=113.09 Aligned_cols=350 Identities=14% Similarity=0.143 Sum_probs=189.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHH-HHHHHHHHHhhcch--HHH-HHHHHHHHhhhccccccccc
Q 011277 88 LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL-PMIIGASISATTRN--LIG-MLLGRFVVGTGMGLGPTVAA 163 (489)
Q Consensus 88 ~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~-~~~i~~~l~~~~~~--~~~-l~~~R~l~G~g~g~~~~~~~ 163 (489)
..++...++..+-.++-+++.|.++|+.|+||....... +..+...+..++++ ++. .++.-.+..++.........
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 345667777777777889999999999998877654443 33444444444444 443 44566777777777777888
Q ss_pred ccccccCCcccchhhhhHHHHHHHHHHHHHHHhh---ccc---------------ccCCchhHHHHHHHHHHHHHHHHH-
Q 011277 164 LYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG---IPV---------------KEIAGWWRICFWVSIVPAAILCLA- 224 (489)
Q Consensus 164 ~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~---~~l---------------~~~~~~wr~~f~~~~i~~~~~~~~- 224 (489)
+++.+..++++-++.+++-.....+|..+..+.. ... .+... =|..+.+.++--++..+-
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED-VRITGLLAALWWLLFALPM 216 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc-chhHHHHHHHHHHHHHhHH
Confidence 8999999998887776654333333322222111 001 11112 355555443332222222
Q ss_pred hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhh
Q 011277 225 MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSG 304 (489)
Q Consensus 225 ~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (489)
+..+++.++ .+..+. + ......+++. ..+++..+.+.....+++.+++.- +
T Consensus 217 ~~~v~~~~~-----~~~~~~-~---------~l~~g~k~L~----------~t~k~i~~~~~i~~FLiA~~~~~D----G 267 (438)
T COG2270 217 ILNVHDAEK-----ISSPPP-T---------ALRNGFKELK----------STFKEIRGRKNLVLFLIARFFYID----G 267 (438)
T ss_pred Hhccccccc-----ccccch-H---------HHHHHHHHHH----------HHHHHHhcccchHHHHHHHHHHHh----h
Confidence 222333221 000000 0 0011111111 122333333333333333333221 2
Q ss_pred HHHHHH----hHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCch
Q 011277 305 INAIFY----FSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA 380 (489)
Q Consensus 305 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 380 (489)
.+.+.. |....++....+..+..+...+..++|+++.|++.||+|.|+++..+.++..+.++...... ...
T Consensus 268 v~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~-----~~~ 342 (438)
T COG2270 268 VNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE-----GEL 342 (438)
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc-----ccH
Confidence 222221 22222222222334555667788899999999999999999998887766555544333221 111
Q ss_pred hhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-chhhHHHHHHH
Q 011277 381 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP-QLLYSIFGTFC 459 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~ 459 (489)
..+ ..+.+++ .+-.+.......|.+++.|+++-++..|+.+..++..++.+|+.+....+..+. ...+....++.
T Consensus 343 ~f~-i~gll~g---~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll 418 (438)
T COG2270 343 DFW-ILGLLVG---TSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLL 418 (438)
T ss_pred HHH-HHHHHHH---HhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 111 1111111 111223345667999999999999999999999999999999998877766554 23333444444
Q ss_pred HHHHHHHHhhcccCCCCC
Q 011277 460 LMAVAFVKRNVVETKGKS 477 (489)
Q Consensus 460 ~~~~~~~~~~~~et~~~~ 477 (489)
.++.+. +.++|+.++++
T Consensus 419 ~iGl~~-L~~v~~~~~~~ 435 (438)
T COG2270 419 LIGLLL-LLRVKVPGRRE 435 (438)
T ss_pred HhhHhh-EEeecCCCCcc
Confidence 444443 34566654443
No 117
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.46 E-value=1.8e-13 Score=113.90 Aligned_cols=135 Identities=21% Similarity=0.362 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCccc
Q 011277 95 SMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV 174 (489)
Q Consensus 95 s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~ 174 (489)
+.+.++..++.++.|++.||+|||+.+..+..+..++.++....++++.+.+.+++.|++.+...+....++.|..|+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 34566778899999999999999999999999999999888888999999999999999999988889899999999999
Q ss_pred chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH-hhhccC
Q 011277 175 RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-MVFCAE 230 (489)
Q Consensus 175 Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~-~~~~~E 230 (489)
|++..++......+|...++.++..+.+..+ |++.+++......+..+. .+..||
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999988888877776666 688887755444443333 333454
No 118
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.37 E-value=2.5e-12 Score=134.23 Aligned_cols=139 Identities=14% Similarity=0.021 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCC
Q 011277 92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171 (489)
Q Consensus 92 ~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~ 171 (489)
+...+..++..+|.++.|+++||+|||+++..+.++.+++.++.+++++...+++.+++.|++.++..+....+++|++|
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44556668889999999999999999999999999999999999999888888899999999888888888899999999
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccCCh
Q 011277 172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESP 232 (489)
Q Consensus 172 ~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp 232 (489)
.++|++++++......+|.+++|++++.+.+.. ...+|++.++..++..++..++|||.
T Consensus 679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~--~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGIT--KAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999998876554432 35677766555555556666779973
No 119
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.33 E-value=3.2e-10 Score=109.46 Aligned_cols=140 Identities=24% Similarity=0.305 Sum_probs=109.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh-chhhHHHHHhHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhhccc
Q 011277 81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGL 157 (489)
Q Consensus 81 ~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~~~~--~~~~l~~~R~l~G~g~g~ 157 (489)
+|++.++. .++..+...+-| +.++++|+++|| .|+|+++..+.+++.+|.++.+.+. +...+.++-.+.++|.|.
T Consensus 56 Lg~~~~~A-~~l~~~y~slVY-~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl 133 (498)
T COG3104 56 LGFDETHA-TGLFSAYGSLVY-LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGL 133 (498)
T ss_pred CCcChHhh-HHHHHHHHHHHH-HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccc
Confidence 44665443 233333333333 667889999998 7999999999999999999998884 788899999999999999
Q ss_pred ccccccccccccCCccc--chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH
Q 011277 158 GPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL 223 (489)
Q Consensus 158 ~~~~~~~~i~e~~~~~~--Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~ 223 (489)
.=+....+++|.+|+++ |....+++.++.++|.+.+|++...+.+..+ |...|..+.+--...++
T Consensus 134 ~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g-~~~gF~~aavGm~~gl~ 200 (498)
T COG3104 134 FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG-WHVGFGLAAVGMIIGLV 200 (498)
T ss_pred ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHH
Confidence 99999999999998643 6677888888899999999999888887777 68888876544333333
No 120
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.29 E-value=4.4e-11 Score=118.26 Aligned_cols=154 Identities=14% Similarity=0.185 Sum_probs=115.3
Q ss_pred chhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 011277 73 PLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV 151 (489)
Q Consensus 73 ~~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~ 151 (489)
..|.+ .+++|.+. .+.++..+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.|++.
T Consensus 238 ~~p~~l~~~~~~~~--~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 315 (393)
T PRK15011 238 NMPLFIINELHLPE--KLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLN 315 (393)
T ss_pred HHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44544 45667654 3456666666667778999999999999999988877666555544455567788888899999
Q ss_pred hhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccC
Q 011277 152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230 (489)
Q Consensus 152 G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~E 230 (489)
+++.|...+....+..|.+|+ +||++.++++....+|..+++.+++.+.+..+ |+..|++..+..++.++..++.||
T Consensus 316 ~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 316 AIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888777666667778899885 59999999988889999999988888777666 688888766666665555555544
No 121
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.27 E-value=5.7e-11 Score=115.15 Aligned_cols=154 Identities=23% Similarity=0.326 Sum_probs=130.1
Q ss_pred eeeccchhhhhhhc-CCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhH-HHHHhHHHHHHHHHHHhhcchHHHHH
Q 011277 68 GVVNEPLESISLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR-AFQLCALPMIIGASISATTRNLIGML 145 (489)
Q Consensus 68 ~~~~~~~~~i~~~~-~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~-~~~~~~~~~~i~~~l~~~~~~~~~l~ 145 (489)
.......|.+.++. |.+ +.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.++....++.+.+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 269 (352)
T cd06174 192 YGLLTYLPLYLQEVLGLS--AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269 (352)
T ss_pred HHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 33444556666654 554 445678888999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011277 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA 224 (489)
Q Consensus 146 ~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~ 224 (489)
+..++.|++.+...+....++.|..|+++|++..+++.....+|..+++.+.+.+.+..+ |++.+++..+..++..+.
T Consensus 270 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLAALL 347 (352)
T ss_pred HHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988887776666 588888766655554443
No 122
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.27 E-value=1.2e-10 Score=114.32 Aligned_cols=223 Identities=15% Similarity=0.141 Sum_probs=132.1
Q ss_pred cccchhhhhhccccccCCCCCccchhhhhccc--cCCcc---c----CCCCCCcchHHHHHHHHHHHHhhhhccceeecc
Q 011277 2 WGRQREASMMYKRTSSRDRSSTFDVEETTALV--QNGTE---V----ENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNE 72 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (489)
+||.+||+..+..-+..++.+.. +++..+.. .+.++ . ...+++.|+.....+.+..+..+.|.+ .+..
T Consensus 215 k~~~~~A~~sl~~y~G~~~~~~~-~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~--ai~~ 291 (485)
T KOG0569|consen 215 KGDEEEARKALKFYRGKEDVEAE-IEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGIN--AIFF 291 (485)
T ss_pred cCCHHHHHHHHHHHhCCCcchhH-HHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcc--eeHH
Confidence 68999999888877655443322 11111111 11110 0 012333333322233333333344433 2344
Q ss_pred chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc---hHH------H
Q 011277 73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR---NLI------G 143 (489)
Q Consensus 73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~---~~~------~ 143 (489)
...++.++-|++.++.+ +.......-..+.++++..+.||+||||.++.+..++.+..++..... +.. .
T Consensus 292 Yst~i~~~aG~~~~~a~--~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~ 369 (485)
T KOG0569|consen 292 YSTSIFKTAGFTPEEAQ--YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYL 369 (485)
T ss_pred HHHHHHHHcCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44567888888766543 445555556678999999999999999999999999888877765431 111 1
Q ss_pred HHHHHHHHhhhccc-ccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHH-
Q 011277 144 MLLGRFVVGTGMGL-GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL- 221 (489)
Q Consensus 144 l~~~R~l~G~g~g~-~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~- 221 (489)
.+++.++..++.+. .-|+..-+.+|++|++.|..++++......+...+-...-.++.+..|- ..|.+..++.++.
T Consensus 370 ~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~ 447 (485)
T KOG0569|consen 370 CIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFL 447 (485)
T ss_pred HHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHH
Confidence 23334443333332 2356778899999999999999998888887765554444444444442 4455444555544
Q ss_pred HHHhhhccCC
Q 011277 222 CLAMVFCAES 231 (489)
Q Consensus 222 ~~~~~~~~Es 231 (489)
+..+..+|||
T Consensus 448 i~~~~~lPET 457 (485)
T KOG0569|consen 448 IYLYRYLPET 457 (485)
T ss_pred HHHHHhCccc
Confidence 4456779999
No 123
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.27 E-value=1.4e-09 Score=107.61 Aligned_cols=312 Identities=17% Similarity=0.194 Sum_probs=177.8
Q ss_pred HHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcc--cccccccccccccCCcccc
Q 011277 98 LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG--LGPTVAALYVTEVSPPFVR 175 (489)
Q Consensus 98 ~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g--~~~~~~~~~i~e~~~~~~R 175 (489)
.+...+.++..|.++||+|||..+.+......+..+...+.. ++ +++ +.|+..+ .......+|++|....++|
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R 146 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEER 146 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HH-Hhh---hcccccchhhhhhhhhhheeeccchhHH
Confidence 455568889999999999999999999888887776666555 33 333 5554433 3456777899999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCC
Q 011277 176 GTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGG 254 (489)
Q Consensus 176 g~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~ 254 (489)
....++...+...+...+|..+..+....+. -.+|+++....++. .....++||+-+ .+.+++ ....+....
T Consensus 147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~-a~~f~ia~~~~~~~~~y~~~~l~Esl~---~~~~~~---~~~~~~~~~ 219 (463)
T KOG2816|consen 147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGI-ALVFLIAAASGILSLLYMLLFLPESLQ---EKERSD---ATLRELTPG 219 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHhhccccccC---cccccc---ccccccCCC
Confidence 9999999999999988888888776655553 56666654444443 344567888832 111111 000000000
Q ss_pred CchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH---HHHHHHHHHHhhhhHH-HHHHhHHHHHHhcCCCcchHHHHH
Q 011277 255 SHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV---FIGSTLFALQQLSGIN-AIFYFSSSVFKSAGLSSGLANVFV 330 (489)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 330 (489)
....... ...+....+.++.|.. ....+........+.. ..++|....++......+......
T Consensus 220 ~~~~~~~-------------~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~ 286 (463)
T KOG2816|consen 220 SLDSSHV-------------ADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLV 286 (463)
T ss_pred cccchhh-------------hhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHH
Confidence 0000000 0001111111111111 1111111111111100 111222221111111122233344
Q ss_pred HHHHHHHHHHHH-HHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccccccccc
Q 011277 331 GIANLLGSVVAM-VLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP 409 (489)
Q Consensus 331 ~i~~~~g~~~~g-~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (489)
.+...++.++.. .+...+|.|+.+..|.....+......+.... +..+.. .....++....|......+
T Consensus 287 ~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~-----w~~~~~-----~v~~~~~~~~~pa~~s~~s 356 (463)
T KOG2816|consen 287 SILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATET-----WMMFAA-----GVVVALAGIVFPAIRAFAS 356 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccc-----hhhhHH-----HHHHHhhcchhHHHHhHHH
Confidence 455556665554 67888898888777777776666665544321 111211 1112233344566667788
Q ss_pred ccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 410 EIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 410 e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (489)
-..+++.+++.+++...+..+.+.++|..++.++.
T Consensus 357 ~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 357 ILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred hhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 88899999999999999999999999988776643
No 124
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.27 E-value=2.6e-11 Score=118.86 Aligned_cols=142 Identities=18% Similarity=0.090 Sum_probs=115.1
Q ss_pred hhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchH--HHHHHHHHHH
Q 011277 74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL--IGMLLGRFVV 151 (489)
Q Consensus 74 ~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~--~~l~~~R~l~ 151 (489)
.+.+.++++.+. .+.++..+.+.++..++.++.|+++||+|||+.+..+.++..++..+....++. ..+....++.
T Consensus 228 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T TIGR00890 228 YKPYGQSLGLSD--GFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305 (377)
T ss_pred HHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence 445567777653 345778888889999999999999999999999999988888888777766643 2344668888
Q ss_pred hhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHH
Q 011277 152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA 218 (489)
Q Consensus 152 G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~ 218 (489)
|++.|...+..+.++.|.+|+++|++..+++.....+|..+++.+.+.+.+..+ |++.|++.++..
T Consensus 306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~ 371 (377)
T TIGR00890 306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFA 371 (377)
T ss_pred HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHH
Confidence 998888877788889999999999999999999999999999988877776666 688887654433
No 125
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.27 E-value=4.7e-11 Score=118.38 Aligned_cols=150 Identities=16% Similarity=0.092 Sum_probs=116.7
Q ss_pred chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 011277 73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG 152 (489)
Q Consensus 73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G 152 (489)
.++.+..+.|.+ +.++..+.+.++..++.++.|++.||+|||+.+..+.++..++.++.+..++.+.+++.+++.|
T Consensus 238 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G 313 (399)
T PRK05122 238 FITLYYAARGWD----GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG 313 (399)
T ss_pred HHHHHHHHcccc----cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344445555552 1245567778888899999999999999999999998888888888888888888888999999
Q ss_pred hhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhh
Q 011277 153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227 (489)
Q Consensus 153 ~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~ 227 (489)
++.+...+.....+.|..|+++||++.++++....+|..+++.+.+.+.+..+ |++.|++.....++..+...+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHH
Confidence 99988887777778899999999999999999999987766666666666556 688888765555544444333
No 126
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.26 E-value=2.6e-11 Score=120.59 Aligned_cols=143 Identities=14% Similarity=0.154 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc----hHHHHHHHHHHHhhhcccccccccc
Q 011277 89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR----NLIGMLLGRFVVGTGMGLGPTVAAL 164 (489)
Q Consensus 89 ~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~----~~~~l~~~R~l~G~g~g~~~~~~~~ 164 (489)
..+...+...++..++.++.|+++||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+....
T Consensus 252 ~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~ 331 (418)
T TIGR00889 252 NASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSV 331 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888889999999999999999999999999888776666532 2456677899999999888888888
Q ss_pred cccccCCcccchhhhhHHH-HHHHHHHHHHHHhhcccccCCc-----hhHHHHHHHHHHHHHH-HHHhhhccCC
Q 011277 165 YVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAG-----WWRICFWVSIVPAAIL-CLAMVFCAES 231 (489)
Q Consensus 165 ~i~e~~~~~~Rg~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~-----~wr~~f~~~~i~~~~~-~~~~~~~~Es 231 (489)
+++|.+|+++||+..++++ ....+|..+||++++.+.+..+ .|+..|++.++..++. .+..++++|+
T Consensus 332 ~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 332 FVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999997 6788899899998887665432 1788887654444433 3444556665
No 127
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.25 E-value=7.5e-11 Score=117.17 Aligned_cols=152 Identities=24% Similarity=0.200 Sum_probs=120.9
Q ss_pred chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 011277 73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG 152 (489)
Q Consensus 73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G 152 (489)
..|.+.++.|.+.+ +.++..+.+.++..++.++.|+++||+|||+.+..+.+...++..+....++.+.+.+.-++.|
T Consensus 242 ~~p~~~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 319 (406)
T PRK11551 242 WLPSLLVGQGLSRS--QAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAG 319 (406)
T ss_pred HHHHHHHhCCCChh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45777788777644 4567888888899999999999999999999998877777776666677778877778888889
Q ss_pred hhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhh
Q 011277 153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV 226 (489)
Q Consensus 153 ~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~ 226 (489)
++.++..+....++.|.+|+++||+..++++....+|..+++.+++.+.+..++|...++......++..+..+
T Consensus 320 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 88777777888899999999999999999999999999999998888776655567777665444444333333
No 128
>PRK12382 putative transporter; Provisional
Probab=99.22 E-value=9.6e-11 Score=115.85 Aligned_cols=146 Identities=17% Similarity=0.139 Sum_probs=118.2
Q ss_pred chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 011277 73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG 152 (489)
Q Consensus 73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G 152 (489)
..|.+.++.+.+. .++..+.+.++..+++++.|++.||+|||+.+..+..+..++.++....++.+.+.+.+++.|
T Consensus 238 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 313 (392)
T PRK12382 238 FVSLYFASKGWAM----AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTG 313 (392)
T ss_pred HHHHHHHhcCCch----hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444555655532 245566677788899999999999999999999999888888888888888888888999999
Q ss_pred hhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH
Q 011277 153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL 223 (489)
Q Consensus 153 ~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~ 223 (489)
++.+...+.....+.|.+|+++||+..++++....+|..+++.+.+.+.+..+ |+..|++.....++..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 383 (392)
T PRK12382 314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGII 383 (392)
T ss_pred HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHH
Confidence 99988877777788999999999999999999999999888888887777667 68888876554444433
No 129
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.18 E-value=1.4e-10 Score=116.87 Aligned_cols=150 Identities=11% Similarity=0.071 Sum_probs=115.5
Q ss_pred eeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh--chhhHHHHH--hHHHHHHHHHHHhhcchHHHH
Q 011277 69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG--VGRRRAFQL--CALPMIIGASISATTRNLIGM 144 (489)
Q Consensus 69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr--~GRr~~~~~--~~~~~~i~~~l~~~~~~~~~l 144 (489)
.....+|.+.+++|.+. .+.++..+...++..++.++.|+++|| +++|+...+ +.++.+++.++....++++.+
T Consensus 259 ~~~~~l~~~~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 336 (455)
T TIGR00892 259 APIIFLVPYAKDKGVDE--YEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGL 336 (455)
T ss_pred chHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 33445676777877653 456788888888888999999999997 334443333 334444555566678899999
Q ss_pred HHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277 145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI 220 (489)
Q Consensus 145 ~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~ 220 (489)
++.+++.|++.+...+....++.|..|+++||+..++++....+|..+|+.+++.+.+..+.|++.|++.++..++
T Consensus 337 ~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li 412 (455)
T TIGR00892 337 VIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVS 412 (455)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHH
Confidence 9999999999998888888899999999999999999999999999999999888776554368888876554433
No 130
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.17 E-value=4.9e-10 Score=114.48 Aligned_cols=159 Identities=11% Similarity=0.033 Sum_probs=97.9
Q ss_pred chhhhhhhcCCCCchhH---------HHH-HHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc---
Q 011277 73 PLESISLDLGFNGNTLA---------EGL-VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--- 139 (489)
Q Consensus 73 ~~~~i~~~~~~~~~~~~---------~~~-~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~--- 139 (489)
..|.+.++.|++.++.. ... ......++..+|.++.++++||+|||++++.+..+.+++..+.+...
T Consensus 310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~ 389 (502)
T TIGR00887 310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL 389 (502)
T ss_pred ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777778887543210 001 22334456667889999999999999999888877776665554322
Q ss_pred -hHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCC--------c-hhHH
Q 011277 140 -NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA--------G-WWRI 209 (489)
Q Consensus 140 -~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~--------~-~wr~ 209 (489)
+...+...-+...++..+..+....+.+|.+|++.|++..++.+....+|..+++.+...+.+.. + ++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 469 (502)
T TIGR00887 390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH 469 (502)
T ss_pred chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence 11111111111222222334456677899999999999999999988888888877665554421 1 1244
Q ss_pred HHHHHHHHHHHHHHHhhhccCC
Q 011277 210 CFWVSIVPAAILCLAMVFCAES 231 (489)
Q Consensus 210 ~f~~~~i~~~~~~~~~~~~~Es 231 (489)
.|++.++..++..+..+++|||
T Consensus 470 ~~~i~~~~~~~~~i~~~~lpEt 491 (502)
T TIGR00887 470 VLEIFALFMFLGILFTLLIPET 491 (502)
T ss_pred HHHHHHHHHHHHHHHheEeccC
Confidence 5554444444444445677998
No 131
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.16 E-value=1.3e-10 Score=116.08 Aligned_cols=132 Identities=12% Similarity=0.012 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccccccccccc
Q 011277 88 LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT 167 (489)
Q Consensus 88 ~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~ 167 (489)
.+.+++.+...++..++.++.|+++||+|||+.+..+.++.+++.++.++++|.+.+.+.+++.|++.+...+....++.
T Consensus 262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 341 (420)
T PRK09528 262 RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYIT 341 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888899999999999999999999999999998888888999999999999999988877777778899
Q ss_pred ccCCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277 168 EVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI 220 (489)
Q Consensus 168 e~~~~~~Rg~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~ 220 (489)
|.+|++.|+...+. ++....+|..+++.+++.+.+..| ||..|...++..++
T Consensus 342 ~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i 394 (420)
T PRK09528 342 LNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLL 394 (420)
T ss_pred HHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHH
Confidence 99999999877654 567778888888888888777767 69888875444433
No 132
>PRK10054 putative transporter; Provisional
Probab=99.15 E-value=1.3e-09 Score=107.69 Aligned_cols=148 Identities=14% Similarity=0.070 Sum_probs=97.9
Q ss_pred HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHH
Q 011277 317 KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFV 393 (489)
Q Consensus 317 ~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (489)
+..+.+ .++......++..++.+..|+++||+|||+++..+.....++........+ . +..+.......
T Consensus 36 ~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~g 107 (395)
T PRK10054 36 RQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNN------V--TLVVLFFALIN 107 (395)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhH------H--HHHHHHHHHHH
Confidence 344554 345556666778888999999999999999888777666655544433221 1 11111111111
Q ss_pred HHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccC
Q 011277 394 LTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET 473 (489)
Q Consensus 394 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et 473 (489)
...+ ...|....+.+|.+|++.|+++.++.....+++..++|.+...+.+ .++...|.+.+.++++..+.....+||+
T Consensus 108 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 108 CAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2211 2245556678899999999999999999999999999988776654 6788888877776666655444445554
Q ss_pred C
Q 011277 474 K 474 (489)
Q Consensus 474 ~ 474 (489)
+
T Consensus 186 ~ 186 (395)
T PRK10054 186 E 186 (395)
T ss_pred c
Confidence 3
No 133
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.15 E-value=9.9e-08 Score=90.68 Aligned_cols=327 Identities=18% Similarity=0.119 Sum_probs=175.9
Q ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhch-----hhHHHHHh-HHHHHHHHHHHhh-----cc-------
Q 011277 78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQLC-ALPMIIGASISAT-----TR------- 139 (489)
Q Consensus 78 ~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~G-----Rr~~~~~~-~~~~~i~~~l~~~-----~~------- 139 (489)
..|+++. ....+...++..+- ....+.+|..||+.+ ||..|++. .+++..+..+..+ +.
T Consensus 7 IvEL~vp--A~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 7 IVELGVP--AWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred HHHhccH--HHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 3466654 22234455544433 356889999999999 88777654 4555554444432 22
Q ss_pred -hH-H--HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHH
Q 011277 140 -NL-I--GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215 (489)
Q Consensus 140 -~~-~--~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~ 215 (489)
.+ + .....-.+.|+|.+...+...++++|..|+++|+++.++......+|..++.++.+.+.+..+--|..-.+..
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~ 163 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG 163 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence 11 2 2234567788888888888889999999999999999999999999988777765544332332354444432
Q ss_pred HHHH--HHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHH
Q 011277 216 VPAA--ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG 293 (489)
Q Consensus 216 i~~~--~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (489)
...+ ++.+...+-.|.+. .+.. + ..++++..-...++++..+++-+..+..
T Consensus 164 ~a~i~~~l~~ia~wg~E~r~-------~~~~-----~---------------~~~~~~~~f~~a~~~~~~~~~a~~f~~f 216 (403)
T PF03209_consen 164 VALIALLLNLIALWGQEPRR-------SRRA-----A---------------AAERPRPPFREAWRQVWASPQARRFFVF 216 (403)
T ss_pred HHHHHHHHHHHHHHhcccCC-------cccc-----c---------------CCCCCCccHHHHHHHHHhCCChhHHHHH
Confidence 2222 22222333334311 0000 0 0001111112234455555655554433
Q ss_pred HHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHhh-hcCCchhHHHhhHHHHHHHHHHH
Q 011277 294 STLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMD-KLGRKALLQWSFFSMAVSMAIQV 369 (489)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~d-r~grr~~~~~~~~~~~i~~~~~~ 369 (489)
.++..+..+ ....+ ..|+--+..+++.+ ..+...+.+.++|-...+++.. |.++++...++.....++..++.
T Consensus 217 l~l~t~a~~-~QD~i--LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii 293 (403)
T PF03209_consen 217 LFLGTLAFF-MQDVI--LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII 293 (403)
T ss_pred HHHHHHHHH-hhHHH--cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 222211111 11111 11111122334433 4556677888888888888766 67777877777777777666655
Q ss_pred HHhhccCCCchhhHHHHHHHHHHHHHHhcCcccc-ccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 370 AASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV-PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (489)
...... .. +..-.....+++ +.|...+ .-...-++.+++..+..+|.=...+.+...++....+.+.|
T Consensus 294 ~a~~~~---~~--~~~~~~~~l~G~--g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 294 LAGPLG---SP--WLFRPGVFLLGL--GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HHHhcc---cc--hHHHHHHHHHHH--hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443221 11 111122222222 2222111 11134567777888898888777777666666665555444
No 134
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.14 E-value=8e-10 Score=112.38 Aligned_cols=158 Identities=17% Similarity=0.057 Sum_probs=103.8
Q ss_pred ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc--chHH--HHHH
Q 011277 71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLI--GMLL 146 (489)
Q Consensus 71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~--~~~~--~l~~ 146 (489)
....|.+.++.|.+.+.. .+......++..++.++.++++||+|||+++..+.++.+++.++.+.. .+.. ....
T Consensus 291 ~~~~p~i~~~~g~~~~~~--~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 368 (479)
T PRK10077 291 LYYAPEIFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 368 (479)
T ss_pred HHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 344577878888765432 344555666778999999999999999999999999988887776543 1211 2222
Q ss_pred HHHHHhhhccc-ccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhc------ccccCCchhHHHHHHHHHHHH
Q 011277 147 GRFVVGTGMGL-GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI------PVKEIAGWWRICFWVSIVPAA 219 (489)
Q Consensus 147 ~R~l~G~g~g~-~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~------~l~~~~~~wr~~f~~~~i~~~ 219 (489)
+-++.+++.+. ..+....++.|.+|+++|+++.++......+|..+++.+.. .+.+..+ |++.|++.++..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~ 447 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMGV 447 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHHHH
Confidence 33444444433 23566788999999999999999998888777666543332 2223344 4666766544444
Q ss_pred HHHH-HhhhccCC
Q 011277 220 ILCL-AMVFCAES 231 (489)
Q Consensus 220 ~~~~-~~~~~~Es 231 (489)
+..+ ..++.||+
T Consensus 448 ~~~~~~~~~~~e~ 460 (479)
T PRK10077 448 LAALFMWKFVPET 460 (479)
T ss_pred HHHHHHHhccccC
Confidence 3333 34456776
No 135
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.13 E-value=3.5e-10 Score=112.44 Aligned_cols=134 Identities=15% Similarity=0.168 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccccccccccccc
Q 011277 90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV 169 (489)
Q Consensus 90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~ 169 (489)
.+...+...++..++.+..|+++||+|||+.+..+.++..++.+.....++.+.+.+.+++.|++.+...+....++.|.
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN 339 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence 34556666777788899999999999999999999888888777777778888888999999999998888888888899
Q ss_pred CCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011277 170 SPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA 224 (489)
Q Consensus 170 ~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~ 224 (489)
.|+++||+..+++.....+|..+|+.+++.+.+..+ |++.|++..+..++..+.
T Consensus 340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~ 393 (408)
T PRK09874 340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVY 393 (408)
T ss_pred CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888777666 688888765555444333
No 136
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.12 E-value=8.3e-12 Score=126.41 Aligned_cols=176 Identities=19% Similarity=0.272 Sum_probs=3.0
Q ss_pred HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~ 133 (489)
+..++..+......+.++..++++.+.|+++.+ +.|++.+.+-++..+..++..++.+|..|-+.+-.+.++++++++
T Consensus 6 ~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~--~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~ 83 (539)
T PF03137_consen 6 VFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSS--QSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSL 83 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHH
Confidence 344555555566677888889999999998755 568999999999999999999999998888888888999999988
Q ss_pred HHhhc----c----------------------------------------------hHHHHHHHHHHHhhhccccccccc
Q 011277 134 ISATT----R----------------------------------------------NLIGMLLGRFVVGTGMGLGPTVAA 163 (489)
Q Consensus 134 l~~~~----~----------------------------------------------~~~~l~~~R~l~G~g~g~~~~~~~ 163 (489)
+.++= . -+..++++.++.|+|....+++..
T Consensus 84 l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~ 163 (539)
T PF03137_consen 84 LFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGI 163 (539)
T ss_dssp --------------------------------------------------------------------SSS---------
T ss_pred HHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcccee
Confidence 76530 0 023467899999999999999999
Q ss_pred ccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc------------------CCch---hHHHHHHHHHHHHHHH
Q 011277 164 LYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE------------------IAGW---WRICFWVSIVPAAILC 222 (489)
Q Consensus 164 ~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~------------------~~~~---wr~~f~~~~i~~~~~~ 222 (489)
+|+=|..+++.-+.+.+++.....+|+.+|.++|+.... ...| |..-|.+.+...++..
T Consensus 164 tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a 243 (539)
T PF03137_consen 164 TYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA 243 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988888754321 0112 5555555555555555
Q ss_pred HHhhhccCC
Q 011277 223 LAMVFCAES 231 (489)
Q Consensus 223 ~~~~~~~Es 231 (489)
+..+++|+.
T Consensus 244 ipl~~FPk~ 252 (539)
T PF03137_consen 244 IPLFFFPKK 252 (539)
T ss_dssp ---------
T ss_pred HHHHcCCcc
Confidence 555556654
No 137
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.10 E-value=2.7e-10 Score=112.36 Aligned_cols=143 Identities=20% Similarity=0.179 Sum_probs=105.6
Q ss_pred eccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH--HHHhh--cchHHHH
Q 011277 70 VNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA--SISAT--TRNLIGM 144 (489)
Q Consensus 70 ~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~--~l~~~--~~~~~~l 144 (489)
....+|.+. +++|.+.+ +.+...+...++..++.++.|+++||+|||+.+.....+..+.. .+... .++.+.+
T Consensus 238 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (394)
T TIGR00883 238 ITTYLPTYLTQTLGLSAN--SALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLF 315 (394)
T ss_pred HHHHHHHHHHHhcCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 334456555 55666543 45677778888889999999999999999998876555444433 12222 2466667
Q ss_pred HHHHHHHhhhcccccccccccccccCCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHH
Q 011277 145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214 (489)
Q Consensus 145 ~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~ 214 (489)
.+..++.|++.+...+....++.|.+|+++|+++.++ ++.+..+|..++|.+++.+.+..+.|++.++..
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~ 386 (394)
T TIGR00883 316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYL 386 (394)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence 7788999998888888889999999999999999887 566677888788888877777666456666544
No 138
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.09 E-value=1.4e-08 Score=101.13 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=102.3
Q ss_pred hhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc-----hhhHHHHHhHHHHHHHHHHHhhc----chHHHH
Q 011277 74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRAFQLCALPMIIGASISATT----RNLIGM 144 (489)
Q Consensus 74 ~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-----GRr~~~~~~~~~~~i~~~l~~~~----~~~~~l 144 (489)
.+-+.+++|.+.++.+ ...+...+.. ..-++.|.++|.+ -||+-++++.++..++....+.. .+....
T Consensus 13 ~~~l~~~l~ls~~~~~--~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQ--RLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHcCCCHHHHH--HHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 4557788998866543 3444444444 3568899999975 35565666666665544444432 345666
Q ss_pred HHHHHHHhhhcccccccccccccccCC--cccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH
Q 011277 145 LLGRFVVGTGMGLGPTVAALYVTEVSP--PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC 222 (489)
Q Consensus 145 ~~~R~l~G~g~g~~~~~~~~~i~e~~~--~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~ 222 (489)
.+.=++..+|....-..+-+.+.|... ++.||...+.......+|.+++..+++.+.+..+ +|+.|.+..+...+..
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHHHHH
Confidence 666678888888888888899999983 3447788888888888898888888887776666 4777776544433333
Q ss_pred -HHhhhccC
Q 011277 223 -LAMVFCAE 230 (489)
Q Consensus 223 -~~~~~~~E 230 (489)
...+..+|
T Consensus 169 ~~~~~~~~e 177 (433)
T PF03092_consen 169 IVALFLLEE 177 (433)
T ss_pred HHHHHhhhh
Confidence 33344444
No 139
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.08 E-value=8.1e-09 Score=102.01 Aligned_cols=154 Identities=15% Similarity=0.166 Sum_probs=107.2
Q ss_pred HHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277 313 SSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM 389 (489)
Q Consensus 313 ~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (489)
+.+.++.+.+. ++......++..++.++.|++.||+|||+++..+....+++..+..... + ... +. ..-
T Consensus 44 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-----~-~~~-l~-~~r 115 (394)
T PRK10213 44 TPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFAN-----S-FSL-LL-IGR 115 (394)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHC-----h-HHH-HH-HHH
Confidence 44445555543 4445566778888999999999999999999888877777655543221 1 111 11 111
Q ss_pred HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhh
Q 011277 390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN 469 (489)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 469 (489)
.+.+++.+. ..|....++.|.+|++.|+++.++......++..++|.+...+.+..+|.+.|.+.++++++..++....
T Consensus 116 ~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~ 194 (394)
T PRK10213 116 ACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKS 194 (394)
T ss_pred HHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 2345566788999999999999999999999999999988888888899888888877776666666566
Q ss_pred cccCCC
Q 011277 470 VVETKG 475 (489)
Q Consensus 470 ~~et~~ 475 (489)
+||+++
T Consensus 195 ~p~~~~ 200 (394)
T PRK10213 195 LPSLPG 200 (394)
T ss_pred CCCCCc
Confidence 788654
No 140
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.08 E-value=1.2e-09 Score=107.14 Aligned_cols=147 Identities=18% Similarity=0.284 Sum_probs=110.8
Q ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccc
Q 011277 78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL 157 (489)
Q Consensus 78 ~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~ 157 (489)
.+++|.+.+ +.++..+.......++.++.|+++||+|||+++..+.++..++..+....++.+.+.+.+++.|++.|.
T Consensus 227 ~~~~g~~~~--~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 227 IHELGLPDK--LAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHcCCCHH--HHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456676543 446666665556667889999999999999999887776666555555667888888899999999888
Q ss_pred ccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhc
Q 011277 158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC 228 (489)
Q Consensus 158 ~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~ 228 (489)
..+....++.|..|+ +|+++.+++.....+|..+++.+++.+.+..+ |+..|++..+..++..+...++
T Consensus 305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhee
Confidence 777777888998876 46799999998888999888888877766666 5888887655555544444433
No 141
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.06 E-value=1.5e-09 Score=106.98 Aligned_cols=160 Identities=19% Similarity=0.187 Sum_probs=103.6
Q ss_pred HHHhhhhccceeeccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhH--HHH------HhHHHH
Q 011277 58 LSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR--AFQ------LCALPM 128 (489)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~--~~~------~~~~~~ 128 (489)
+..++........+...|.+. +++|.+ +.+.++..+...++..++.++.|+++||+|||+ ... .+.++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (399)
T TIGR00893 222 LGQFLVNIGLGFFLTWFPTYLVQERGLS--ILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL 299 (399)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccc--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 333333333333444555554 445654 344577888888888999999999999999996 111 111111
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhH
Q 011277 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR 208 (489)
Q Consensus 129 ~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr 208 (489)
.+........++.......-.+.+.+.+ ..+....++.|..|+++||+..++++....+|..+++.+.+.+.+..+.|+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~ 378 (399)
T TIGR00893 300 SLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFA 378 (399)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchh
Confidence 1111112222344444444455555444 677888899999999999999999999999999999988888777666357
Q ss_pred HHHHHHHHHHHH
Q 011277 209 ICFWVSIVPAAI 220 (489)
Q Consensus 209 ~~f~~~~i~~~~ 220 (489)
..|++..+..++
T Consensus 379 ~~~~~~~~~~~~ 390 (399)
T TIGR00893 379 GALMVVAALALI 390 (399)
T ss_pred HHHHHHHHHHHH
Confidence 777765444443
No 142
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.06 E-value=1.4e-09 Score=110.08 Aligned_cols=148 Identities=18% Similarity=0.167 Sum_probs=99.8
Q ss_pred eccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH--HhhcchHHHHHH
Q 011277 70 VNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI--SATTRNLIGMLL 146 (489)
Q Consensus 70 ~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l--~~~~~~~~~l~~ 146 (489)
....+|.+. +++|++.. +.++..+...++..+|.++.|+++||+|||+.+.....+..++..+ .....+...+.+
T Consensus 277 ~~~~~p~yl~~~~g~s~~--~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (467)
T PRK09556 277 IDNWSPVYAFQELGFSKE--DAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLA 354 (467)
T ss_pred HHHHHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344566554 56777644 4567788888899999999999999999998876654444433222 223456666778
Q ss_pred HHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHH-HHHHHHHhhccccc------------CCchhHHHHHH
Q 011277 147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKE------------IAGWWRICFWV 213 (489)
Q Consensus 147 ~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~-G~~~g~~~~~~l~~------------~~~~wr~~f~~ 213 (489)
.+++.|++..+..........|.+|+++||.+.++.+....+ |...++.+.+.+.+ ..+ |+..|++
T Consensus 355 ~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~-~~~~f~~ 433 (467)
T PRK09556 355 SLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG-WAGTFAA 433 (467)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC-hHHHHHH
Confidence 888888654433333335667999999999999999877665 65555555444444 345 6888876
Q ss_pred HHHHHHH
Q 011277 214 SIVPAAI 220 (489)
Q Consensus 214 ~~i~~~~ 220 (489)
..+..++
T Consensus 434 ~~~~~~~ 440 (467)
T PRK09556 434 LDIAAIG 440 (467)
T ss_pred HHHHHHH
Confidence 5443333
No 143
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.06 E-value=1.2e-09 Score=111.53 Aligned_cols=140 Identities=16% Similarity=0.061 Sum_probs=104.4
Q ss_pred ccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc--chHHHHHHH
Q 011277 71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLIGMLLG 147 (489)
Q Consensus 71 ~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~--~~~~~l~~~ 147 (489)
...+|.+. +++|.+. .+.++..+...++..+|.++.|+++||+|||+++..+.++..++.++.... .+.+.+.+.
T Consensus 295 ~~~lp~~l~~~~g~~~--~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (496)
T PRK03893 295 QALLPTYLKTDLGYDP--HTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL 372 (496)
T ss_pred HHHHHHHHHhhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34566666 4777754 356788899999999999999999999999999988877666655444332 334444455
Q ss_pred HHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277 148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (489)
Q Consensus 148 R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~ 213 (489)
.++.+....+..+..+.++.|.+|+++||+..+++.....+|..+|+++++.+.+..+ |+..++.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~ 437 (496)
T PRK03893 373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALAS 437 (496)
T ss_pred HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHH
Confidence 5555544434455667788999999999999999988889999999999888877777 4666544
No 144
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.05 E-value=1.7e-08 Score=101.18 Aligned_cols=155 Identities=16% Similarity=0.142 Sum_probs=106.2
Q ss_pred HhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011277 310 YFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV 386 (489)
Q Consensus 310 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
.+.+.+.++.+.+. ++......++..++.++.|++.||+|||+.+.++.+..+++..+.....+ .+...
T Consensus 44 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~l~ 115 (434)
T PRK11663 44 AAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSS--------LWAFA 115 (434)
T ss_pred HhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhH--------HHHHH
Confidence 34455566666653 45566677888899999999999999999988887777766654433211 11111
Q ss_pred HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277 387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
...++..+..+.+ .+....+..|.+|++.|++++++.+....+++.+++.+...+.+..||.+.|.+.++++++..++.
T Consensus 116 ~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~ 194 (434)
T PRK11663 116 LLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFL 194 (434)
T ss_pred HHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 1111222222222 244556789999999999999999999999999999888888888898888888777665554444
Q ss_pred HhhcccC
Q 011277 467 KRNVVET 473 (489)
Q Consensus 467 ~~~~~et 473 (489)
...+||+
T Consensus 195 ~~~~~~~ 201 (434)
T PRK11663 195 CWRLRDK 201 (434)
T ss_pred HHHcCCC
Confidence 4445543
No 145
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.05 E-value=2.5e-09 Score=105.26 Aligned_cols=133 Identities=12% Similarity=0.019 Sum_probs=115.6
Q ss_pred eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHH
Q 011277 70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF 149 (489)
Q Consensus 70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~ 149 (489)
+....|.+.+|+|.+.+ +.|+..+...++..++.++.+++.||+|+|+.+.++.++..+...+.+++++.+.+++.++
T Consensus 224 ~~~~~~~~l~~~g~s~~--~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 301 (382)
T TIGR00902 224 YYGFSAIYWQAAGISAS--ATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQI 301 (382)
T ss_pred HHHHHHHHHHHCCCCHh--HHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Confidence 44455666678777643 4577777888888899999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccccccccccCCcccchhhhhHHH-HHHHHHHHHHHHhhcccccCCc
Q 011277 150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAG 205 (489)
Q Consensus 150 l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~ 205 (489)
++|+..|...+....++.+. |+++|++..++++ ....+|..+++++++.+.+..+
T Consensus 302 l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g 357 (382)
T TIGR00902 302 LHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG 357 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998 9999999999986 5778899999999998888776
No 146
>TIGR00898 2A0119 cation transport protein.
Probab=99.05 E-value=9.4e-10 Score=112.65 Aligned_cols=133 Identities=14% Similarity=0.016 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchH--HHHHHHHHHHhhhcccccccccccccccCCcc
Q 011277 96 MCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL--IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF 173 (489)
Q Consensus 96 ~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~--~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~ 173 (489)
...+....+.++.++++||+|||+.+..+.++.+++.++....++. ....+.-++.+++.+...+....+..|.+|++
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 442 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV 442 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 3445566788999999999999999999998888888777766544 44555566777777777778888999999999
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccCC
Q 011277 174 VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231 (489)
Q Consensus 174 ~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Es 231 (489)
.|+.+.++.+....+|.+++|.+.. +.+ .+ +...+++.+...++..+...++||+
T Consensus 443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~lpet 497 (505)
T TIGR00898 443 VRNLGVGVCSTMARVGSIISPFLVY-LGE-KW-LFLPLVLFGGLALLAGILTLFLPET 497 (505)
T ss_pred HHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHHHHHHHcCcCC
Confidence 9999999999999999888888766 332 22 4556665555555555556678887
No 147
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.05 E-value=8.5e-09 Score=101.54 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=107.1
Q ss_pred HHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277 313 SSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM 389 (489)
Q Consensus 313 ~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (489)
+...++.+.+ .++......++..++.++.|++.||+|||+.+..+.....++......... .+......
T Consensus 29 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 100 (385)
T TIGR00710 29 PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN--------IETLLVLR 100 (385)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc--------HHHHHHHH
Confidence 4444555554 355666777888999999999999999999988877766666555433211 11111111
Q ss_pred HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhh
Q 011277 390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN 469 (489)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 469 (489)
++.+.+.+. ..+....+..|.+|++.|++..++......++..+++.+...+.+..++...+.+.+.++++..+.....
T Consensus 101 ~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 101 FVQAFGASA-GSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred HHHHcchhH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 122221111 1234456789999999999999999999999999999888877777888888888777777666666666
Q ss_pred cccCCCC
Q 011277 470 VVETKGK 476 (489)
Q Consensus 470 ~~et~~~ 476 (489)
.||++.+
T Consensus 180 ~~~~~~~ 186 (385)
T TIGR00710 180 LPETLPY 186 (385)
T ss_pred CCCCCCC
Confidence 7777554
No 148
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.04 E-value=8e-09 Score=102.72 Aligned_cols=153 Identities=15% Similarity=0.116 Sum_probs=103.5
Q ss_pred HHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011277 314 SVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML 390 (489)
Q Consensus 314 ~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (489)
.+-++.+.+.+ .......++..++.++.|+++||+|||+++..+.....++..+..... + ... +. ..-+
T Consensus 41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-----~-~~~-l~-~~r~ 112 (413)
T PRK15403 41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT-----S-MTQ-FL-IARF 112 (413)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC-----C-HHH-HH-HHHH
Confidence 33444454433 344556678888999999999999999998888766666554443221 1 111 11 1112
Q ss_pred HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhc
Q 011277 391 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNV 470 (489)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 470 (489)
+.+++.+. ..+....+..|.+|++.|++.+++......++..++|.+...+.+..||.+.|.+.+++.++..++....+
T Consensus 113 l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~l 191 (413)
T PRK15403 113 IQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAM 191 (413)
T ss_pred HHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22222111 12344567889999999999999999999999988888777777778898999888887777766655678
Q ss_pred ccCCC
Q 011277 471 VETKG 475 (489)
Q Consensus 471 ~et~~ 475 (489)
||++.
T Consensus 192 p~~~~ 196 (413)
T PRK15403 192 PETVK 196 (413)
T ss_pred CCCcc
Confidence 88754
No 149
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.04 E-value=1.6e-09 Score=106.67 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=110.5
Q ss_pred cchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 011277 72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV 151 (489)
Q Consensus 72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~ 151 (489)
..+|.+.++.|.+.+ +.++..+...++..+++++.|+++||+|||+++..+..+..++..... . ........++.
T Consensus 221 ~~lp~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~ 295 (381)
T PRK03633 221 GLMPLYLNHQGMSDA--SIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFIL 295 (381)
T ss_pred HHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHH
Confidence 346777777776543 456778888889999999999999999999999888877777655443 2 23344577888
Q ss_pred hhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHH
Q 011277 152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL 221 (489)
Q Consensus 152 G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~ 221 (489)
|++.+...+.....+.|..|+++++...+.+.....+|..+||.+++.+.++.+ |++.|.+.+...++.
T Consensus 296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~ 364 (381)
T PRK03633 296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIY 364 (381)
T ss_pred HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHH
Confidence 887777778888888999999888888888888889999999998888877777 577877654444433
No 150
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.04 E-value=1.5e-08 Score=100.79 Aligned_cols=155 Identities=19% Similarity=0.144 Sum_probs=105.7
Q ss_pred HHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011277 312 SSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388 (489)
Q Consensus 312 ~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
.+.+.++.+.+ .++......++..++.+..|++.||+|||+++..+.+...++..+.....+ .. .+.+ .
T Consensus 31 ~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~------~~-~l~~-~ 102 (412)
T TIGR02332 31 GLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATG------PE-SLYL-L 102 (412)
T ss_pred HHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC------HH-HHHH-H
Confidence 34444555544 345666677888899999999999999999988887777766655443211 11 1111 1
Q ss_pred HHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCchhhHHHHHHHHHH
Q 011277 389 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE------QLGPQLLYSIFGTFCLMA 462 (489)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~g~~~~~~~~~~~~~~~ 462 (489)
-++.+++.+ +..|....+..|.+|+++|+++.++.+....++..+++.+...+.+ ..||++.|.+.++..++.
T Consensus 103 r~l~G~~~~-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~ 181 (412)
T TIGR02332 103 RILVGIAEA-GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVIL 181 (412)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHH
Confidence 122222222 1235555678999999999999999999888888888887666553 258888998888777766
Q ss_pred HHHHHhhcccCCC
Q 011277 463 VAFVKRNVVETKG 475 (489)
Q Consensus 463 ~~~~~~~~~et~~ 475 (489)
.+..+..+||++.
T Consensus 182 ~~~~~~~~~~~p~ 194 (412)
T TIGR02332 182 GVMTWFWLDDSPD 194 (412)
T ss_pred HHHHhhccCCCcc
Confidence 6666667888763
No 151
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.03 E-value=3.1e-09 Score=105.06 Aligned_cols=158 Identities=17% Similarity=0.175 Sum_probs=112.7
Q ss_pred eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc-hHHHHHHHH
Q 011277 70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR-NLIGMLLGR 148 (489)
Q Consensus 70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~-~~~~l~~~R 148 (489)
....+|.+.+++|.+.+ +.+...+.+.++..+|.++.|++.||+|||+.+..+..+..++..+....+ +...+. -
T Consensus 224 ~~~~lp~~l~~~g~s~~--~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~ 299 (393)
T PRK09705 224 LIAWLPAFYIEIGASAQ--YSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--A 299 (393)
T ss_pred HHHHHHHHHHHcCCChh--hhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--H
Confidence 33456667777776643 457888899999999999999999999999999888777767665544323 222222 2
Q ss_pred HHHhhhcccccccccccccccCC-cccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHH-HHHhh
Q 011277 149 FVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL-CLAMV 226 (489)
Q Consensus 149 ~l~G~g~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~-~~~~~ 226 (489)
++.|++.+...+.......|..+ +++||+..++.+....++..++|.+.+.+.+..|.|+..|++..+..++. .....
T Consensus 300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK09705 300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLR 379 (393)
T ss_pred HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 46688887777766666667775 67899999998888888888888888877776665677777654433333 33345
Q ss_pred hccCC
Q 011277 227 FCAES 231 (489)
Q Consensus 227 ~~~Es 231 (489)
+.||+
T Consensus 380 ~~~~~ 384 (393)
T PRK09705 380 FAPAR 384 (393)
T ss_pred hcccc
Confidence 66776
No 152
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.03 E-value=3.9e-09 Score=107.01 Aligned_cols=161 Identities=15% Similarity=0.016 Sum_probs=112.0
Q ss_pred eeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh-----cc---
Q 011277 68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-----TR--- 139 (489)
Q Consensus 68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~-----~~--- 139 (489)
.......|.+.+++|.+.+ +.++......++..++.++.|+++||+|||+.+..+.++..++.++.+. ..
T Consensus 301 ~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (481)
T TIGR00879 301 NAIMYYSPTIFENAGVSTD--HAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS 378 (481)
T ss_pred eehHHHHHHHHHHcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 3344456777788887653 3467777788888899999999999999999999888877777666652 11
Q ss_pred ---hHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277 140 ---NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV 216 (489)
Q Consensus 140 ---~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i 216 (489)
+...+....++.+.......+....++.|.+|+++|++..++......+|..+++.+...+.+..+ |++.|++.+.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~-~~~~f~~~~~ 457 (481)
T TIGR00879 379 KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIG-VGGVFIFFGG 457 (481)
T ss_pred cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccceehhHHH
Confidence 233333333333333333445666778999999999999999999999998888887666655555 5777776544
Q ss_pred HHHHHHHH-hhhccCC
Q 011277 217 PAAILCLA-MVFCAES 231 (489)
Q Consensus 217 ~~~~~~~~-~~~~~Es 231 (489)
..++..+. .++.||+
T Consensus 458 ~~~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 458 LNVLGLIFVYFFLPET 473 (481)
T ss_pred HHHHHHHHHheecccC
Confidence 44443333 3455665
No 153
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.02 E-value=2.4e-08 Score=101.13 Aligned_cols=150 Identities=11% Similarity=0.066 Sum_probs=93.9
Q ss_pred hHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011277 311 FSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG 387 (489)
Q Consensus 311 ~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
+.+.+.++.+.+. +.......++..++.++.|+++||+|||+++..+.+...++.++..... + .... ..
T Consensus 58 ~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----s-~~~l--~~ 129 (476)
T PLN00028 58 LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS-----S-ATGF--IA 129 (476)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc-----C-HHHH--HH
Confidence 3445556666643 3445566678888999999999999999988777666665544433221 1 1111 11
Q ss_pred HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCCchhhHHHHHH
Q 011277 388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE---------QLGPQLLYSIFGTF 458 (489)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~g~~~~~~~~~~~ 458 (489)
..++.+++.+ +..+ ...+.+|.+|++.|+++.|+.+...++++.+++.+.+.+.. ..||++.|.+.+++
T Consensus 130 ~r~l~G~~~~-~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l 207 (476)
T PLN00028 130 VRFFIGFSLA-TFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLL 207 (476)
T ss_pred HHHHHHHHHH-hhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Confidence 1112222221 1122 23467899999999999999988888887777665543322 13688888888887
Q ss_pred HHHHHHHHHhhc
Q 011277 459 CLMAVAFVKRNV 470 (489)
Q Consensus 459 ~~~~~~~~~~~~ 470 (489)
+++..+...+..
T Consensus 208 ~l~~~l~~~~~~ 219 (476)
T PLN00028 208 HIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHc
Confidence 766655544443
No 154
>PRK03699 putative transporter; Provisional
Probab=99.02 E-value=2e-09 Score=106.41 Aligned_cols=149 Identities=13% Similarity=0.069 Sum_probs=112.8
Q ss_pred ccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHH
Q 011277 71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF 149 (489)
Q Consensus 71 ~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~ 149 (489)
...+|.+. +++|++.+ +.++..+.+.++..+|.++.|+++||+|||+.+.....+..+...+....++...+.+.-+
T Consensus 225 ~~~~p~~l~~~~g~s~~--~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (394)
T PRK03699 225 ISWVPEYAQKKFGMSLE--DAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAIL 302 (394)
T ss_pred HHHHHHHHHHHcCCChH--HhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 34566666 45677643 4578888888999999999999999999999998877777776666666777777777888
Q ss_pred HHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH
Q 011277 150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL 223 (489)
Q Consensus 150 l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~ 223 (489)
+.|++.+..++....+..|..|. ++++..+.......+|..++|.+.+.+.+..+ |+..++...+..++...
T Consensus 303 ~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 303 GLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFV 374 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHH
Confidence 99998887777777777787764 46777788878888899889888887777667 57777765444444333
No 155
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.02 E-value=1.2e-08 Score=100.85 Aligned_cols=158 Identities=15% Similarity=0.090 Sum_probs=105.5
Q ss_pred HhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011277 310 YFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV 386 (489)
Q Consensus 310 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
...+.+.++.+.+. ++......++..++.++.|+++||+|||+.+..+.....++..+..... + ... ..
T Consensus 24 ~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~-----~-~~~-~~- 95 (392)
T PRK10473 24 VGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE-----T-SSL-FL- 95 (392)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC-----c-HHH-HH-
Confidence 34555556656553 3455566678888899999999999999998888776666655543221 1 111 11
Q ss_pred HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277 387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
....+.+.+.+ ...+....+..|.+|++.|++..+..+....++..++|.+...+.+..++...+.+.+.++++..++.
T Consensus 96 ~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 96 AGRFLQGIGAG-CCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred HHHHHHHhhhh-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence 11111122111 11234556789999999999999999999888888888776666667788888888887777766666
Q ss_pred HhhcccCCCC
Q 011277 467 KRNVVETKGK 476 (489)
Q Consensus 467 ~~~~~et~~~ 476 (489)
...+||++.+
T Consensus 175 ~~~~~~~~~~ 184 (392)
T PRK10473 175 LFILKETRPA 184 (392)
T ss_pred HHHcCCCCCc
Confidence 6667776543
No 156
>TIGR00895 2A0115 benzoate transport.
Probab=99.01 E-value=9.7e-09 Score=101.48 Aligned_cols=156 Identities=21% Similarity=0.233 Sum_probs=107.1
Q ss_pred HhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011277 310 YFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV 386 (489)
Q Consensus 310 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
++.+.+.+..+.+. ++......++..++.++.|+++||+|||+.+..+.....++..+..... . .+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~ 109 (398)
T TIGR00895 38 FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT-----N---VTQLL 109 (398)
T ss_pred hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc-----c---hHHHH
Confidence 44555555555543 4555666788889999999999999999998887776666554433221 1 11111
Q ss_pred HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277 387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
...++.+++.+ ...+....+..|.+|++.|+++.++......++..+++.+.+.+.+..++...+.+.+.++++..+..
T Consensus 110 ~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 188 (398)
T TIGR00895 110 ILRFLAGLGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLL 188 (398)
T ss_pred HHHHHHhcccc-cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHH
Confidence 11222222221 22355667889999999999999999999999999999888888788888888877766666665555
Q ss_pred HhhcccCC
Q 011277 467 KRNVVETK 474 (489)
Q Consensus 467 ~~~~~et~ 474 (489)
...+||+.
T Consensus 189 ~~~~~~~~ 196 (398)
T TIGR00895 189 MRFLPESI 196 (398)
T ss_pred HHhCCCCC
Confidence 56677764
No 157
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.01 E-value=2.4e-09 Score=106.79 Aligned_cols=158 Identities=13% Similarity=0.068 Sum_probs=122.6
Q ss_pred ccchhhhhhh-cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHH
Q 011277 71 NEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF 149 (489)
Q Consensus 71 ~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~ 149 (489)
+...|.+.++ +|.+.. ..++..+.+.+|..++.++.+++.||.++|+.+..+.++..++.++.+..++...+.++.+
T Consensus 243 ~~~~p~~~~~~~g~~~~--~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (417)
T PRK10489 243 RVLYPALADEVWQMGAA--QIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA 320 (417)
T ss_pred HHhhHHHHHhccCCChh--HhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 3345666666 777543 4578888889999999999999999988888888888888888777888888887888899
Q ss_pred HHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHH-HHHHHHhhhc
Q 011277 150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA-AILCLAMVFC 228 (489)
Q Consensus 150 l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~-~~~~~~~~~~ 228 (489)
+.|++.+...+....++.|..|++.||+..+++.....+|..+|+.+.+.+.+..+. +..++..+... ++..+.....
T Consensus 321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T PRK10489 321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTP-VASASASGFGLLIIGVLLLLVL 399 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHhc
Confidence 999988877777778899999999999999999999999999999988887776663 55555443333 3333344445
Q ss_pred cCC
Q 011277 229 AES 231 (489)
Q Consensus 229 ~Es 231 (489)
+|.
T Consensus 400 ~~~ 402 (417)
T PRK10489 400 GEL 402 (417)
T ss_pred ccc
Confidence 554
No 158
>PRK03545 putative arabinose transporter; Provisional
Probab=98.99 E-value=2.8e-08 Score=98.23 Aligned_cols=154 Identities=16% Similarity=0.109 Sum_probs=104.8
Q ss_pred HHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011277 312 SSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388 (489)
Q Consensus 312 ~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
.+.+.++.+.+. ++......++..++.+..|++.||+|||+++..+.....++........+ ... +.+ .
T Consensus 32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~-l~~-~ 103 (390)
T PRK03545 32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWN------FTV-LLI-S 103 (390)
T ss_pred hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhcc------HHH-HHH-H
Confidence 345555556554 34445566777788888999999999999998887777766555433211 111 111 1
Q ss_pred HHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHh
Q 011277 389 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR 468 (489)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
.++.+.+.+ ...|....+..|.+|+++|++++|+......++..++|.+...+.+..||++.|.+.++++++..++...
T Consensus 104 r~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 104 RIGIAFAHA-IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1224445678899999999999999999999999998888777777789999998888877777666555
Q ss_pred hcccCC
Q 011277 469 NVVETK 474 (489)
Q Consensus 469 ~~~et~ 474 (489)
.+||.+
T Consensus 183 ~~~~~~ 188 (390)
T PRK03545 183 LLPLLP 188 (390)
T ss_pred hCCCCC
Confidence 666643
No 159
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.99 E-value=1.7e-08 Score=98.49 Aligned_cols=152 Identities=15% Similarity=0.039 Sum_probs=99.2
Q ss_pred HHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277 313 SSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM 389 (489)
Q Consensus 313 ~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (489)
+.+.++.+.+ .++......++..++.+..|+++||+|||+++.........+. ...... ... ..+. ..-
T Consensus 15 p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~~~-----~~~-~~l~-~~R 86 (368)
T TIGR00903 15 SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLLDP-----FNY-EWLL-ACQ 86 (368)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHHh-----ccH-HHHH-HHH
Confidence 3444444443 3455566778888999999999999999987654433222221 111110 111 1111 111
Q ss_pred HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhh
Q 011277 390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN 469 (489)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 469 (489)
++.+++ .+..+......+|.+|+++|++++++......++..+++.+...+.+..||+..|.+.+++.++..++.++.
T Consensus 87 ~l~G~g--~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~ 164 (368)
T TIGR00903 87 LLAALG--QPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAA 164 (368)
T ss_pred HHHHhH--hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 222222333458999999999999999999999999999888888888899999988888887777777778
Q ss_pred cccCC
Q 011277 470 VVETK 474 (489)
Q Consensus 470 ~~et~ 474 (489)
+||.+
T Consensus 165 lp~~p 169 (368)
T TIGR00903 165 LPALP 169 (368)
T ss_pred cCCCC
Confidence 88864
No 160
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.98 E-value=8.5e-09 Score=104.98 Aligned_cols=281 Identities=18% Similarity=0.258 Sum_probs=185.4
Q ss_pred HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~ 132 (489)
+++.++..+..+...+.++..+.++.+.|+++.++ .|++.+.+=+|..+...+..+..-|.-|-+.+-++.+++++++
T Consensus 99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~--sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQ--SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCc--ceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 45556667777877888888999999999997654 6899999999999999999999999999999999999999999
Q ss_pred HHHhhc--------------------c------------------------------h-HH-HHHHHHHHHhhhcccccc
Q 011277 133 SISATT--------------------R------------------------------N-LI-GMLLGRFVVGTGMGLGPT 160 (489)
Q Consensus 133 ~l~~~~--------------------~------------------------------~-~~-~l~~~R~l~G~g~g~~~~ 160 (489)
++.++- + + ++ .++++.++.|+|....++
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 987641 0 0 12 456799999999999999
Q ss_pred cccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc----C-----------Cch---hHHHHHHHHHHHHHHH
Q 011277 161 VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE----I-----------AGW---WRICFWVSIVPAAILC 222 (489)
Q Consensus 161 ~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~----~-----------~~~---wr~~f~~~~i~~~~~~ 222 (489)
....|+=|...+++-..+.+++.....+|+++|.++|..... . ..| |+.-|++.+...++..
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888764321 1 124 6677777666666666
Q ss_pred HHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCC----CCcchhHHHhhhccchhHHHHHHHHHH
Q 011277 223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD----DGDIVKFEELLYGRHFRVVFIGSTLFA 298 (489)
Q Consensus 223 ~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (489)
+.++++|.+.. ...+..+++ +.+. .+.+.. ..+.+... ..-....+++++++.+....++.++..
T Consensus 337 ~p~f~fPk~lp---~~~~~~~~~-~~~~-~k~~~~------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~ 405 (735)
T KOG3626|consen 337 VPLFFFPKELP---KSQKRKRAR-DLHV-LKTESG------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIES 405 (735)
T ss_pred HHHHhCcccCc---cccccchhh-hhcc-cccccc------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 66777776532 111111100 0000 000000 00000000 001123455666655544444333322
Q ss_pred HHhhhhHHHHHHhHHHHH-HhcCCCcchHHHHHHHH----HHHHHHHHHHHhhhcCC
Q 011277 299 LQQLSGINAIFYFSSSVF-KSAGLSSGLANVFVGIA----NLLGSVVAMVLMDKLGR 350 (489)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~----~~~g~~~~g~l~dr~gr 350 (489)
. .+.....|.|.++ .+.+.++..+++..+.. ..+|.+++|++..|+..
T Consensus 406 ~----~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl 458 (735)
T KOG3626|consen 406 L----AITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKL 458 (735)
T ss_pred H----HHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence 2 2333334444444 45677777666665543 34677888999998854
No 161
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.98 E-value=8.1e-09 Score=105.18 Aligned_cols=157 Identities=16% Similarity=0.074 Sum_probs=109.4
Q ss_pred hHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011277 311 FSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG 387 (489)
Q Consensus 311 ~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
..+.+.++.+.+ .++......++..++.++.|+++||+|||+.+..+.....++..+..... ... ..+.
T Consensus 24 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------~~~--~l~~ 95 (485)
T TIGR00711 24 AIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP------NLE--LMII 95 (485)
T ss_pred HHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC------CHH--HHHH
Confidence 344555555543 45677788899999999999999999999998888777666655433211 111 1111
Q ss_pred HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277 388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK 467 (489)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
...+.+++.+ ...|....+..|.+|++.|+++.++......++..+++.+.+.+.+..+|.+.|.+.+.++++..+...
T Consensus 96 ~~~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 174 (485)
T TIGR00711 96 FRVIQGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAF 174 (485)
T ss_pred HHHHHHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHH
Confidence 1122222211 233556678899999999999999999999999999998888777888888888887777666666665
Q ss_pred hhcccCCCC
Q 011277 468 RNVVETKGK 476 (489)
Q Consensus 468 ~~~~et~~~ 476 (489)
...||++.+
T Consensus 175 ~~~~~~~~~ 183 (485)
T TIGR00711 175 FILPRDKPA 183 (485)
T ss_pred HHcCCcccc
Confidence 667775543
No 162
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.97 E-value=2.4e-08 Score=97.36 Aligned_cols=140 Identities=15% Similarity=0.098 Sum_probs=95.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277 323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP 402 (489)
Q Consensus 323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (489)
.++......++..++.++.|+++||+|||+++..+.....++..+....... .. ...+.......+.+++.+. ..|
T Consensus 36 ~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~l~g~~~~~-~~~ 111 (365)
T TIGR00900 36 LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL--GG-LNIWQVYVLAGILAIAQAF-FTP 111 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc--CC-CcHHHHHHHHHHHHHHHHH-HHH
Confidence 4566677778888999999999999999999888776666555544333211 10 1111111222222222221 234
Q ss_pred cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277 403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
....+.+|.+|++.|++..++......++..+++.+...+.+..++.+.+.+.++..++..++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 112 AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5566889999999999999999999999999999888888888888888777666555554433
No 163
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.97 E-value=4.1e-09 Score=104.51 Aligned_cols=138 Identities=20% Similarity=0.151 Sum_probs=106.1
Q ss_pred hhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH-HHhhcchHHHHHHHHHHH
Q 011277 74 LESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS-ISATTRNLIGMLLGRFVV 151 (489)
Q Consensus 74 ~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~-l~~~~~~~~~l~~~R~l~ 151 (489)
+|.+ .+++|++. .+.++..+...++..++.++.|+++||+|||+.+..+.++..+... +....++.+.+.+..++.
T Consensus 261 ~~~~~~~~~g~s~--~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (405)
T TIGR00891 261 LPTYLKADLGLSP--HTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQ 338 (405)
T ss_pred hHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 4444 34566654 3557888888999999999999999999999999887766533322 333455666677777888
Q ss_pred hhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277 152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (489)
Q Consensus 152 G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~ 213 (489)
|+..++..+....++.|.+|+++||++.++......+|..+++++++.+.+..|.|+..+..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 339 QMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 87777777778889999999999999999999888999888998888887766645665543
No 164
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.96 E-value=2.5e-08 Score=101.72 Aligned_cols=156 Identities=15% Similarity=0.044 Sum_probs=105.7
Q ss_pred HHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011277 312 SSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388 (489)
Q Consensus 312 ~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
.|.+.++.+.+ .++....+.++...+.+..|+++||+|||+.+..+.....++.+...... + .+..+..
T Consensus 29 ~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~-----~---~~~li~~ 100 (495)
T PRK14995 29 APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSP-----T---ASWLIAT 100 (495)
T ss_pred HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcC-----C---HHHHHHH
Confidence 44555554443 34566667778888889999999999999999888877777666544321 1 1111112
Q ss_pred HHHHHHHHhcCcccccccccccc-CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277 389 MLMFVLTFALGAGPVPSLLLPEI-FPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK 467 (489)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
-.+.+++.+. ..|.......+. .|++.|+++.|+......++..++|.+.+.+.+..+|++.|.+...++++..++..
T Consensus 101 r~l~G~g~~~-~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~ 179 (495)
T PRK14995 101 RALLAIGAAM-IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTA 179 (495)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHH
Confidence 2222222221 223333334454 47899999999999999999999999988888888999999888777777766666
Q ss_pred hhcccCCCC
Q 011277 468 RNVVETKGK 476 (489)
Q Consensus 468 ~~~~et~~~ 476 (489)
+.+||.+++
T Consensus 180 ~~l~~~~~~ 188 (495)
T PRK14995 180 RYVPRQAGR 188 (495)
T ss_pred HhCCCCCCC
Confidence 677775443
No 165
>PRK09952 shikimate transporter; Provisional
Probab=98.96 E-value=8.8e-09 Score=103.29 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=99.0
Q ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh---c-chHHHHHHHHHHHhh
Q 011277 78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT---T-RNLIGMLLGRFVVGT 153 (489)
Q Consensus 78 ~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~---~-~~~~~l~~~R~l~G~ 153 (489)
.+++|.+.+. .............++.++.|+++||+|||+++..+.++..++...... . ++...+++.-++.|+
T Consensus 278 ~~~~g~s~~~--~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (438)
T PRK09952 278 TQNLGLPREL--FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI 355 (438)
T ss_pred HHhcCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4566765432 223333444455678889999999999999998877665554433322 2 234444456677788
Q ss_pred hcccccccccccccccCCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCC-chhHHHHHHHHHHHHHHHHHhhhccCC
Q 011277 154 GMGLGPTVAALYVTEVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIA-GWWRICFWVSIVPAAILCLAMVFCAES 231 (489)
Q Consensus 154 g~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~g~~~~~~l~~~~-~~wr~~f~~~~i~~~~~~~~~~~~~Es 231 (489)
+.+...+....++.|.+|++.|+...++ +.++..+|...+|.+...+.+.. +.|+..+....+..++..+..+..+|+
T Consensus 356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 8777777778899999999999888887 44555577777777766664432 336777766555555544444455554
No 166
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.94 E-value=4.6e-08 Score=97.20 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=102.7
Q ss_pred HHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011277 314 SVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML 390 (489)
Q Consensus 314 ~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (489)
.+.++.+.+. +.......++..++.++.|+++||+|||+.+..+.....++........ + ... + +....
T Consensus 38 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----~-~~~-l-~~~~~ 109 (406)
T PRK15402 38 AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ-----S-IEQ-F-TLLRF 109 (406)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc-----c-HHH-H-HHHHH
Confidence 3444555443 3455667788889999999999999999998887766666555443221 1 111 1 11111
Q ss_pred HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhc
Q 011277 391 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNV 470 (489)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 470 (489)
+.+.+.+ ...+....+..|.+|++.|.+..++......++..++|.+...+.+..++.+.+.+.+.++++..+..+...
T Consensus 110 l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 188 (406)
T PRK15402 110 LQGIGLC-FIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAM 188 (406)
T ss_pred HHHhHhh-hHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhC
Confidence 1122111 112445567789999999999999988888888888888777777777888888888887777766666667
Q ss_pred ccCCC
Q 011277 471 VETKG 475 (489)
Q Consensus 471 ~et~~ 475 (489)
||+++
T Consensus 189 ~~~~~ 193 (406)
T PRK15402 189 PETAG 193 (406)
T ss_pred CCCCc
Confidence 88754
No 167
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.94 E-value=1.1e-08 Score=101.53 Aligned_cols=150 Identities=11% Similarity=0.062 Sum_probs=106.0
Q ss_pred ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHH-HhHHHHHHHHHHHhh-----cchHHHH
Q 011277 71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-LCALPMIIGASISAT-----TRNLIGM 144 (489)
Q Consensus 71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~-~~~~~~~i~~~l~~~-----~~~~~~l 144 (489)
....|.+.+++|.+.+ +.++..+...++..++.++.|+++||+|||+.+. .+.+...++...... .++.+.+
T Consensus 242 ~~~~p~~~~~~g~s~~--~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 319 (402)
T TIGR00897 242 AVFLPMFVAELGFSTS--EWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA 319 (402)
T ss_pred HHHHHHHHHHcCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence 3456777788887654 3467777788899999999999999999988764 333333333333221 3456667
Q ss_pred HHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011277 145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA 224 (489)
Q Consensus 145 ~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~ 224 (489)
.+..++.|++.+...+. ...+.|..| ++||+..++++....+|..++|.+++.+.+..| |+..+++.++..++..+.
T Consensus 320 ~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~~~~ 396 (402)
T TIGR00897 320 LIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVSAFL 396 (402)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHH
Confidence 77888899887765443 345677654 589999999999999999999988887777777 477777655544444443
Q ss_pred h
Q 011277 225 M 225 (489)
Q Consensus 225 ~ 225 (489)
.
T Consensus 397 ~ 397 (402)
T TIGR00897 397 T 397 (402)
T ss_pred H
Confidence 3
No 168
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.94 E-value=4.7e-08 Score=95.56 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=92.8
Q ss_pred HHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHH
Q 011277 315 VFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM 391 (489)
Q Consensus 315 ~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
+.++.+.+ .++......++..++.++.|+++||+|||+.+..+.+...++..+...... . .+......++
T Consensus 28 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~-----~--~~~~~~~~~~ 100 (366)
T TIGR00886 28 IKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ-----S--YSVLLLLRLF 100 (366)
T ss_pred HHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh-----h--HHHHHHHHHH
Confidence 33444544 456667778889999999999999999999998888777776655443320 1 1111111222
Q ss_pred HHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCchhh-HHHHHHHH
Q 011277 392 FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ----------LGPQLLY-SIFGTFCL 460 (489)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~g~~~~~-~~~~~~~~ 460 (489)
.+.+ .+..+....+.+|.+|++.|+++.++.....+++..+++.+.+.+... .+|.+.+ ...+.+..
T Consensus 101 ~g~~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 178 (366)
T TIGR00886 101 IGIA--GGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILL 178 (366)
T ss_pred HHHh--chhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Confidence 2222 122233445788999999999999999888888877777766555442 2567766 33344443
Q ss_pred HHHHHHHhhccc
Q 011277 461 MAVAFVKRNVVE 472 (489)
Q Consensus 461 ~~~~~~~~~~~e 472 (489)
+..+......+|
T Consensus 179 ~~~~~~~~~~~~ 190 (366)
T TIGR00886 179 LPALLIFFVGAD 190 (366)
T ss_pred HHHHHHHHhccc
Confidence 333333333444
No 169
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.93 E-value=4.1e-08 Score=98.19 Aligned_cols=154 Identities=20% Similarity=0.266 Sum_probs=99.6
Q ss_pred hHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011277 311 FSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG 387 (489)
Q Consensus 311 ~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
..+.+.++.+.+ .++......++..++.++.|+++||+|||+.+..+.....++..+...... .+....
T Consensus 40 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~ 111 (426)
T PRK12307 40 IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASG--------VIMLTL 111 (426)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhH--------HHHHHH
Confidence 334444455544 345566677888999999999999999999998888877777665443321 111111
Q ss_pred HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277 388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK 467 (489)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
.-.+.+++.+ +..+....+..|.+|++.|+++.++......++..+++.+...+.+..+|.+.+.+... ..+...+..
T Consensus 112 ~r~l~G~g~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~-~~~~~~~~~ 189 (426)
T PRK12307 112 SRFIVGMGMA-GEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL-PVLLVIYIR 189 (426)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH-HHHHHHHHH
Confidence 1111122111 12344556789999999999999999888888888888777766667788777765433 333333334
Q ss_pred hhcccCC
Q 011277 468 RNVVETK 474 (489)
Q Consensus 468 ~~~~et~ 474 (489)
...||++
T Consensus 190 ~~~p~~~ 196 (426)
T PRK12307 190 ARAPESK 196 (426)
T ss_pred HHCCCCh
Confidence 4466654
No 170
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.93 E-value=6.7e-09 Score=86.03 Aligned_cols=136 Identities=20% Similarity=0.173 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccc
Q 011277 329 FVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLL 408 (489)
Q Consensus 329 ~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (489)
...++.+++.+..+++.||+|||+.+..+.....++........ + .+.............+ ...+....+.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~g~~~~-~~~~~~~~~~ 76 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-----N---ITVLIIARFLQGFGAA-FALVAGAALI 76 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-----c---HHHHHHHHHHHHHHHH-HHHHhHHHHH
Confidence 34577788899999999999999988777666555544433211 1 1111111222222222 1234556678
Q ss_pred cccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccC
Q 011277 409 PEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET 473 (489)
Q Consensus 409 ~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et 473 (489)
.|.+|++.|++..++.+...+++..+++.+.+.+.+..++...+.+.+.+.++..+......|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999998888777777777788887777777777666667764
No 171
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.93 E-value=2.7e-08 Score=99.42 Aligned_cols=137 Identities=12% Similarity=0.069 Sum_probs=92.3
Q ss_pred cCCCc---chHHHHHHHHHHHHHHHHHHHhhhc-CCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHH
Q 011277 319 AGLSS---GLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVL 394 (489)
Q Consensus 319 ~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (489)
.+.+. +.......+...++.+++|+++||+ |||+.+.++.+...++.+++..... .....+ ..+.+...
T Consensus 40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~----~~~~~~---l~l~li~i 112 (493)
T PRK15462 40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI----HPSFLY---LSLAIIVC 112 (493)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc----chhHHH---HHHHHHHH
Confidence 45543 3444555567778889999999999 9999998888877776554321110 001111 11112122
Q ss_pred HHhcCccccccccccccCCch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHH
Q 011277 395 TFALGAGPVPSLLLPEIFPSR--IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV 463 (489)
Q Consensus 395 ~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 463 (489)
+.+ ...|....+.+|.||++ .|.++.++..+..++++.++|.+.+.+.+..|+...|.+.++..+++.
T Consensus 113 G~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l 182 (493)
T PRK15462 113 GYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL 182 (493)
T ss_pred hcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence 221 12355567899999986 799999999999999999999999988888898888877665444443
No 172
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.92 E-value=4e-08 Score=97.30 Aligned_cols=147 Identities=16% Similarity=0.111 Sum_probs=97.5
Q ss_pred HhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHH
Q 011277 317 KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFV 393 (489)
Q Consensus 317 ~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (489)
++.+.+. |+......+...+..++.|+++||+|||+++..+.....++........ . . ..+. ....+.+
T Consensus 39 ~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~-----~-~-~~l~-~~~~l~g 110 (400)
T PRK11646 39 DQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH-----E-P-WLLW-LSCILSG 110 (400)
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc-----c-H-HHHH-HHHHHHH
Confidence 4445543 4444444566666678899999999999999888777777665543321 1 1 1111 1122222
Q ss_pred HHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccC
Q 011277 394 LTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET 473 (489)
Q Consensus 394 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et 473 (489)
++.+ ...|....+..|.+|++.|+++.++.....+++..++|.+.+.+. ..++.+.|.+.+..+++..+......||.
T Consensus 111 ~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 111 LGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 2221 123445567889999999999999999999999999998877776 67888888777766665554444456664
No 173
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.92 E-value=1.2e-08 Score=102.16 Aligned_cols=151 Identities=18% Similarity=0.161 Sum_probs=118.4
Q ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhh--HHHHHhHHHHHHHHHHHhh--------cchHHHHHHH
Q 011277 78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQLCALPMIIGASISAT--------TRNLIGMLLG 147 (489)
Q Consensus 78 ~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr--~~~~~~~~~~~i~~~l~~~--------~~~~~~l~~~ 147 (489)
.+++|++..+. ....-...+..++|++++|++.||+|.| +++..+++++.+..+...+ .++-+.+.+.
T Consensus 309 ~~~lg~s~~~l--~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~ 386 (477)
T PF11700_consen 309 TEVLGMSTTQL--IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVL 386 (477)
T ss_pred HHhcCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHH
Confidence 44788876553 3444445666779999999999999999 8999988888776666655 6788888899
Q ss_pred HHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhh
Q 011277 148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227 (489)
Q Consensus 148 R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~ 227 (489)
-++.|+..|+..+.+..+.+|+.|+++.+...+++.+..-....+||++-+.+.+..+.-|+.++...+..++.+++...
T Consensus 387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999887776665554577776544444444444444
Q ss_pred ccC
Q 011277 228 CAE 230 (489)
Q Consensus 228 ~~E 230 (489)
+++
T Consensus 467 v~~ 469 (477)
T PF11700_consen 467 VDV 469 (477)
T ss_pred ccc
Confidence 433
No 174
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.92 E-value=7.8e-08 Score=91.99 Aligned_cols=152 Identities=17% Similarity=0.150 Sum_probs=112.2
Q ss_pred hHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011277 311 FSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG 387 (489)
Q Consensus 311 ~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
..+++-++.+.+. |+....++.+..+++++...+.||+.||++++....++.++.++....++.. .+.+.
T Consensus 35 LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~-------~Ll~a 107 (394)
T COG2814 35 LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFA-------VLLLA 107 (394)
T ss_pred chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHH
Confidence 3456666666664 5667778899999999999999999999999988888888887766554321 11111
Q ss_pred HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277 388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK 467 (489)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
- ++..+..+ ...++.....+++.|+++|++++++...-..+...++.-+...+-+.+||+.+|.+.+.+.++..+..+
T Consensus 108 R-~~~g~a~G-~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~ 185 (394)
T COG2814 108 R-ALAGLAHG-VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLW 185 (394)
T ss_pred H-HHHHHHHH-HHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111 112355668899999999999999998877776666666666666789999999999999999999888
Q ss_pred hhcc
Q 011277 468 RNVV 471 (489)
Q Consensus 468 ~~~~ 471 (489)
..+|
T Consensus 186 ~~lP 189 (394)
T COG2814 186 KLLP 189 (394)
T ss_pred HhCC
Confidence 8899
No 175
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.91 E-value=9.4e-08 Score=96.35 Aligned_cols=157 Identities=15% Similarity=0.074 Sum_probs=95.7
Q ss_pred hHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011277 311 FSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG 387 (489)
Q Consensus 311 ~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
..+.+.+. +.+ .++......++..++.++.|+++||+|||+++..+..+..++.+........ .. ..+..+.
T Consensus 51 ~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~--~~--~~~~~~~ 125 (452)
T PRK11273 51 AMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--TS--SIAVMFV 125 (452)
T ss_pred hhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc--cc--cHHHHHH
Confidence 33444444 544 3456667778888999999999999999999888877766666544332110 01 1111122
Q ss_pred HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277 388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF-LRLLEQLGPQLLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
...+.+++.+... |.......|.+|++.|++++++.+....+++.+.+.+. ..+....+|.+.|.+.+.++++..++.
T Consensus 126 ~~~l~gi~~g~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~ 204 (452)
T PRK11273 126 LLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFA 204 (452)
T ss_pred HHHHHHHHHhccc-hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 2222233333222 33334578899999999999998888777764433332 222233477778888777766655555
Q ss_pred HhhcccC
Q 011277 467 KRNVVET 473 (489)
Q Consensus 467 ~~~~~et 473 (489)
...+||+
T Consensus 205 ~~~~~~~ 211 (452)
T PRK11273 205 FAMMRDT 211 (452)
T ss_pred HHHccCC
Confidence 5566665
No 176
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.90 E-value=6.2e-08 Score=95.43 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=104.4
Q ss_pred HHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277 313 SSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM 389 (489)
Q Consensus 313 ~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (489)
+...++.+.+ .++......++..++.++.|++.||+|||+++..+....+++.++..... + ... +.+ ..
T Consensus 27 ~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~-----~-~~~-l~~-~r 98 (382)
T PRK10091 27 TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS-----S-YLM-LAI-GR 98 (382)
T ss_pred HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC-----c-HHH-HHH-HH
Confidence 3444455544 45666777899999999999999999999999888777776665543321 1 111 111 11
Q ss_pred HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhh
Q 011277 390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN 469 (489)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 469 (489)
.+.+.+.+. ..+....+..|.+|++.|++.++.......++..+++.+...+.+..++++.|.+.+.+.++..+...+.
T Consensus 99 ~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~ 177 (382)
T PRK10091 99 LVSGFPHGA-FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFW 177 (382)
T ss_pred HHHHhhhHH-HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222111 1233445678999999999999998888888888888776667677888888888888776666655667
Q ss_pred cccCCC
Q 011277 470 VVETKG 475 (489)
Q Consensus 470 ~~et~~ 475 (489)
+||.+.
T Consensus 178 lp~~~~ 183 (382)
T PRK10091 178 VPDIRD 183 (382)
T ss_pred CCCCCc
Confidence 888643
No 177
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.90 E-value=5.1e-08 Score=96.45 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=100.5
Q ss_pred HHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277 313 SSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM 389 (489)
Q Consensus 313 ~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (489)
+.+.++.+.+. ++......++..++.++.|+++||+|||+.+..+.....++........ + .. .+ ....
T Consensus 32 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-----~-~~-~l-~~~~ 103 (394)
T PRK11652 32 ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH-----S-LT-VL-IAAS 103 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-----c-HH-HH-HHHH
Confidence 34445555543 4556667788889999999999999999998887766666555433221 1 11 11 1111
Q ss_pred HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhh
Q 011277 390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN 469 (489)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 469 (489)
.+.+++.+. ..+....+..|.+|.+.|+.+.++......++..++|.+...+.+..++.+.|.+.+.+.++..+.....
T Consensus 104 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 182 (394)
T PRK11652 104 AIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARW 182 (394)
T ss_pred HHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHh
Confidence 111221111 1234445678889999999999988877777777888777777677788888887777666555555556
Q ss_pred cccCCCC
Q 011277 470 VVETKGK 476 (489)
Q Consensus 470 ~~et~~~ 476 (489)
.||++..
T Consensus 183 ~~~~~~~ 189 (394)
T PRK11652 183 MPETRPA 189 (394)
T ss_pred CCccCcc
Confidence 7886543
No 178
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.90 E-value=3.6e-08 Score=93.31 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=118.4
Q ss_pred HHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277 313 SSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM 389 (489)
Q Consensus 313 ~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (489)
+.+..+.+++ .|.......+..-++.++.|.++||.+.|..+..++++.+++.+++.... ...+.....
T Consensus 53 p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~--------s~~~~~~l~ 124 (448)
T COG2271 53 PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP--------SLFLFAVLW 124 (448)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh--------HHHHHHHHH
Confidence 3444444454 35667778889999999999999999999999999888888877765433 222333334
Q ss_pred HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277 390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF--LRLLEQLGPQLLYSIFGTFCLMAVAFVK 467 (489)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
.+-+...++|+.|+.. .+..-||++.||+..++=+..+++|+.+.+.+. ....++.++...|.+-++++++..++.+
T Consensus 125 ~lng~fQg~Gwpp~~~-~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~ 203 (448)
T COG2271 125 VLNGWFQGMGWPPCAR-TITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILL 203 (448)
T ss_pred HHHHHHhcCCCcHHHH-HHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence 4445566777766655 578889999999999999999999999999887 6666667888999988888877766554
Q ss_pred hh---cccCCCCCHHH
Q 011277 468 RN---VVETKGKSLQE 480 (489)
Q Consensus 468 ~~---~~et~~~~~~e 480 (489)
+. .||+.|.+--|
T Consensus 204 ~~~rd~Pqs~GLP~ie 219 (448)
T COG2271 204 FLLRDRPQSEGLPPIE 219 (448)
T ss_pred HHhCCCccccCCCCHH
Confidence 44 57777765433
No 179
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.89 E-value=6.1e-07 Score=86.35 Aligned_cols=180 Identities=16% Similarity=0.138 Sum_probs=125.1
Q ss_pred HHHHHHHHhhhhccceeeccch-hhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHH
Q 011277 53 VLVATLSSFLFGYHLGVVNEPL-ESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII 130 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i 130 (489)
..++|+..|+..+.-+ -|.+ |.+.+ |.|++.++... -+.-...-.+....++...++|..|-||+++++.+...+
T Consensus 7 ~~llc~~gf~~~frPs--EPfl~~yL~~~~kn~T~~qv~~-~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~ 83 (412)
T PF01770_consen 7 TLLLCLFGFFKEFRPS--EPFLTPYLTGPDKNFTEEQVNN-EIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYII 83 (412)
T ss_pred HHHHHHHHHHHhcCCC--CccchHHHcCCccCCCHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4555666566544322 1111 22333 36777655432 344445556667778899999999999999999999999
Q ss_pred HHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc-hhHH
Q 011277 131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRI 209 (489)
Q Consensus 131 ~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-~wr~ 209 (489)
...+.-+.++...+-+..++-|++.+... +..+|+--..|+++--++.+....+..+|-..+.++|-.+....+ ..+.
T Consensus 84 t~~lll~~~sv~~mq~~q~~yg~~~a~ev-ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~ 162 (412)
T PF01770_consen 84 TWLLLLFGTSVLAMQLMQFFYGLATAAEV-AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQ 162 (412)
T ss_pred HHHHHHHHCcHHHHHHHHHHHHHHHHHHH-HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999987754 555777777788777788888888888888777777765443221 1466
Q ss_pred HHHHHHHHHHHHHHHhhhccCChHHHH
Q 011277 210 CFWVSIVPAAILCLAMVFCAESPHWLY 236 (489)
Q Consensus 210 ~f~~~~i~~~~~~~~~~~~~Esp~~l~ 236 (489)
.+++......+.++..+++|..++-+.
T Consensus 163 L~~isl~~~~~a~~~~~fLP~~~~S~~ 189 (412)
T PF01770_consen 163 LNYISLASVSLALLIALFLPMPKRSLF 189 (412)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcccc
Confidence 666665555555566677777655333
No 180
>PRK10504 putative transporter; Provisional
Probab=98.89 E-value=1e-07 Score=96.70 Aligned_cols=154 Identities=14% Similarity=-0.003 Sum_probs=103.2
Q ss_pred hHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011277 311 FSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG 387 (489)
Q Consensus 311 ~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
..+.+.++.+.+. ++......++..++.++.|+++||+|||+++..+.....++.++.... .+ .. ..+.
T Consensus 32 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~-~~--~l~~ 103 (471)
T PRK10504 32 ALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-----GT-LN--ELLL 103 (471)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-----CC-HH--HHHH
Confidence 4455556566553 345566667888899999999999999999887766665555443221 11 11 1111
Q ss_pred HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277 388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK 467 (489)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
...+.+++.+. ..|....+..|.+|++.|+++.++.....+++..++|.+...+.+..+|.+.|.+....+.+..+...
T Consensus 104 ~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~ 182 (471)
T PRK10504 104 ARVLQGVGGAM-MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATL 182 (471)
T ss_pred HHHHHHhhhHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 12222222211 23455567889999999999999999999999999998888888888888888777666666655555
Q ss_pred hhcccC
Q 011277 468 RNVVET 473 (489)
Q Consensus 468 ~~~~et 473 (489)
...|+.
T Consensus 183 ~~~~~~ 188 (471)
T PRK10504 183 MLMPNY 188 (471)
T ss_pred HhCCCc
Confidence 555554
No 181
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.88 E-value=4.5e-08 Score=98.05 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcC-ccccccccc
Q 011277 330 VGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALG-AGPVPSLLL 408 (489)
Q Consensus 330 ~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 408 (489)
..++..+|+++.|+++||+|||+.+..+.....++.++.....+............ ..+-+..+.+.| ..|....++
T Consensus 72 ~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~R~l~G~g~g~~~~~~~~~i 149 (432)
T PRK10406 72 GFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALL--LLARLFQGLSVGGEYGTSATYM 149 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH--HHHHHHHHhhhhhhHhhHHHHH
Confidence 34555589999999999999999998888877777666543321100000001111 112222233332 346667789
Q ss_pred cccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCchhhHHHHHHHHHHHHHHHhhcccCCC
Q 011277 409 PEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL--------EQLGPQLLYSIFGTFCLMAVAFVKRNVVETKG 475 (489)
Q Consensus 409 ~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~ 475 (489)
+|.+|+++|+...++.......+..+++.+...+. ...||+..|.+.++..++. .+....+||++.
T Consensus 150 ~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~ 223 (432)
T PRK10406 150 SEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQ 223 (432)
T ss_pred HHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCch
Confidence 99999999999988876555555555444322221 2468888887766655544 344556788654
No 182
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.87 E-value=9.8e-09 Score=99.66 Aligned_cols=150 Identities=20% Similarity=0.177 Sum_probs=102.1
Q ss_pred HHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011277 314 SVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML 390 (489)
Q Consensus 314 ~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (489)
.+.++.+.+ .++......++..++.++.|+++||+|||+++..+.....++..+.... .+ .. ..+...+
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~-~~--~~~~~~~ 93 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-----SN-FW--LLLIARF 93 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-----CC-HH--HHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-----hh-HH--HHhhhcc
Confidence 334444443 4566667778889999999999999999999888888777773333322 11 11 1122222
Q ss_pred HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhc
Q 011277 391 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNV 470 (489)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 470 (489)
+.+++.+ ...+....+..|.+|++.|++..++......++..+++.+...+.+..++.+.|.+.+.++++..++.....
T Consensus 94 l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 94 LLGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp HHHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhh
Confidence 2222221 234556668999999999999999999999999999988877776677788888888888877766433334
Q ss_pred cc
Q 011277 471 VE 472 (489)
Q Consensus 471 ~e 472 (489)
+|
T Consensus 173 ~~ 174 (352)
T PF07690_consen 173 PE 174 (352)
T ss_dssp --
T ss_pred hh
Confidence 33
No 183
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.86 E-value=4e-08 Score=96.76 Aligned_cols=131 Identities=11% Similarity=0.016 Sum_probs=106.3
Q ss_pred chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 011277 73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG 152 (489)
Q Consensus 73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G 152 (489)
..|.+.+|.|.+. .+.|...+...++..++.++.|++.||+|+|+.+..+.++..++.++.+.+++.+.+++..++.|
T Consensus 227 ~~~~~~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 304 (382)
T PRK11128 227 FSAIYWQAAGYSA--STIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHC 304 (382)
T ss_pred HHHHHHHHCCCCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3455557777763 34577777777788889999999999999999999999988888888888899999999999999
Q ss_pred hhcccccccccccccccCCcccchhhhhHHH-HHHHHHHHHHHHhhcccccCCch
Q 011277 153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGW 206 (489)
Q Consensus 153 ~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~~ 206 (489)
++.+...+....++.+. +++++++..+.+. ....+|..+|+.+++.+.+..++
T Consensus 305 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~ 358 (382)
T PRK11128 305 GTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA 358 (382)
T ss_pred HHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 99988888888888886 5666788888775 66677878889998888777664
No 184
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.85 E-value=6.8e-08 Score=94.90 Aligned_cols=152 Identities=16% Similarity=0.148 Sum_probs=104.7
Q ss_pred HHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011277 314 SVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML 390 (489)
Q Consensus 314 ~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (489)
.+.++.+.+ .+.......++..++.++.|+++||+|||+.+..+.....++........ + .. .......
T Consensus 16 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~-----~-~~--~~~~~~~ 87 (377)
T PRK11102 16 VIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ-----T-ID--QLIYMRF 87 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc-----c-HH--HHHHHHH
Confidence 333444444 34555667788889999999999999999998888777666665543321 1 11 1111112
Q ss_pred HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhc
Q 011277 391 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNV 470 (489)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 470 (489)
+.+++.+ ...+....+..|.+|++.|++..++......++..+++.+...+.+..++.+.|.+.+.++++..++....+
T Consensus 88 l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (377)
T PRK11102 88 LHGLAAA-AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFI 166 (377)
T ss_pred HHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC
Confidence 2222221 123445567899999999999999999999999999998887787888888888888877777666655667
Q ss_pred ccCC
Q 011277 471 VETK 474 (489)
Q Consensus 471 ~et~ 474 (489)
||++
T Consensus 167 ~~~~ 170 (377)
T PRK11102 167 PETL 170 (377)
T ss_pred CccC
Confidence 7754
No 185
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.84 E-value=1.1e-07 Score=95.51 Aligned_cols=146 Identities=12% Similarity=0.038 Sum_probs=95.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277 323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP 402 (489)
Q Consensus 323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (489)
.++......++..++.++.|+++||+|||+.+..+.+..+++......... . . ...........+.+++.+.. .+
T Consensus 63 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~--~~~~~l~~~~~l~g~~~g~~-~~ 137 (438)
T TIGR00712 63 LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW-A-T--SSIAIMFVLLFLNGWFQGMG-WP 137 (438)
T ss_pred hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc-c-c--chHHHHHHHHHHHHHHhhcc-hH
Confidence 355666777888899999999999999999888776666665554322110 0 0 11111111122222222222 23
Q ss_pred cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCchhhHHHHHHHHHHHHHHHhhcccC
Q 011277 403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE-QLGPQLLYSIFGTFCLMAVAFVKRNVVET 473 (489)
Q Consensus 403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~et 473 (489)
.......|.+|++.|++++++.+....+++.+++.+.....+ ..+|+..|.+.++++++..+.....+||+
T Consensus 138 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 138 PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 334567899999999999999998888888888776554443 45788888888877766655555556664
No 186
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.82 E-value=3.4e-08 Score=96.86 Aligned_cols=153 Identities=13% Similarity=0.080 Sum_probs=102.4
Q ss_pred HHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277 313 SSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM 389 (489)
Q Consensus 313 ~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (489)
+.+.++.+.+ .++......++..++.++.|+++||+|||+.+..+.....++.++...... .+..+...
T Consensus 19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 90 (379)
T TIGR00881 19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS--------LWVMAALW 90 (379)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh--------HHHHHHHH
Confidence 3333444443 456667778889999999999999999999998887777766655443321 11111112
Q ss_pred HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhhHHHHHHHHHHHHHHHh
Q 011277 390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGL-LFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR 468 (489)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
.+.+++.+ ...|....+..|.+|++.|+++.++.+....++..+++. ....+.+..++.+.|.+.+.++++..+....
T Consensus 91 ~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (379)
T TIGR00881 91 ALNGIFQG-MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFL 169 (379)
T ss_pred HHHHhhcc-ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence 22222222 234566678899999999999999999998898888884 4444455667888887777776666555555
Q ss_pred hcccCC
Q 011277 469 NVVETK 474 (489)
Q Consensus 469 ~~~et~ 474 (489)
..||++
T Consensus 170 ~~~~~~ 175 (379)
T TIGR00881 170 LLRDSP 175 (379)
T ss_pred eeCCCc
Confidence 565543
No 187
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.82 E-value=1.2e-07 Score=93.77 Aligned_cols=137 Identities=12% Similarity=0.042 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccc
Q 011277 324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV 403 (489)
Q Consensus 324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (489)
++......+...+..++.|++.||+|||+++..+....+++.+....... .. ...++.+++ .....|.
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~--------~~---~~r~l~G~~-~a~~~pa 108 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH--------PL---LAYGLVGIG-AAAYSPA 108 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH--------HH---HHHHHHHHH-HHHHHHH
Confidence 45566677888899999999999999999998887776665544332211 01 111111221 2223466
Q ss_pred ccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCC
Q 011277 404 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETK 474 (489)
Q Consensus 404 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~ 474 (489)
...+.+|++|++.|+++.++......++..++|.+.+.+.+.. +...+.+.+.+.++. .+..+.+||.+
T Consensus 109 ~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~~~~~l~~~~ 177 (393)
T PRK11195 109 KYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-ALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 6778999999999999999999998888888998877776643 333343333333323 33345677654
No 188
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.81 E-value=9.9e-07 Score=82.62 Aligned_cols=110 Identities=21% Similarity=0.218 Sum_probs=78.7
Q ss_pred HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277 53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~ 132 (489)
+.+-.+....+........ .+.+++|++.++. +.+....+....+...+.|.++||+|||+..+...+++++.+
T Consensus 40 l~vY~La~~aDWLQGpY~Y----~LY~~yg~~~~qI--a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~sc 113 (354)
T PF05631_consen 40 LLVYLLAMAADWLQGPYLY----ALYESYGFSEHQI--AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSC 113 (354)
T ss_pred HHHHHHHHHHHHhhcchhH----HHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 4444555566665554333 2446788865443 344444455556778889999999999999999999998887
Q ss_pred HHHhhcchHHHHHHHHHHHhhhcccccccccc-ccccc
Q 011277 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAAL-YVTEV 169 (489)
Q Consensus 133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~-~i~e~ 169 (489)
+ .-..+++..++++|++.|++.......--. ++.|.
T Consensus 114 l-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh 150 (354)
T PF05631_consen 114 L-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEH 150 (354)
T ss_pred H-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 556789999999999999998877665444 35555
No 189
>PRK15075 citrate-proton symporter; Provisional
Probab=98.80 E-value=7.5e-08 Score=96.55 Aligned_cols=134 Identities=19% Similarity=0.113 Sum_probs=87.7
Q ss_pred eccchhhhhhh-cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH----HhhcchHHHH
Q 011277 70 VNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI----SATTRNLIGM 144 (489)
Q Consensus 70 ~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l----~~~~~~~~~l 144 (489)
.....|.+.++ +|++.+ +.++....+.++..++.++.|+++||+|||+++..+..+..+...+ ....+++..+
T Consensus 257 ~~~~~p~~l~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (434)
T PRK15075 257 ITVYTPTFGKTVLHLSAA--DSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARM 334 (434)
T ss_pred HHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 34446666654 677644 3466677777888899999999999999999987765444332221 1123344444
Q ss_pred HHHHHHHhhhcccccccccccccccCCcccchhhhhHH-HHHHHHHHHHHHHhhcccccCCc
Q 011277 145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAG 205 (489)
Q Consensus 145 ~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~ 205 (489)
.+..++.|++.+...+....++.|.+|+++|+...++. +.+..++..++|.+.+.+.+..+
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 335 LAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 45556666666665555667889999999999999885 44454434445665555555445
No 190
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.80 E-value=4e-08 Score=99.46 Aligned_cols=144 Identities=19% Similarity=0.177 Sum_probs=121.9
Q ss_pred eccchhhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHH
Q 011277 70 VNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR 148 (489)
Q Consensus 70 ~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R 148 (489)
+...+|.+.+ ++|. +....|++.+.+.+|..+|+++.+.+.+|+++++.+..+.++++++.+..+++++.+...+.-
T Consensus 237 ~~aLlPl~a~~~l~~--~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l 314 (524)
T PF05977_consen 237 VWALLPLFARDVLGG--GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIAL 314 (524)
T ss_pred HHHhhhHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3345676665 4454 455679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277 149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV 216 (489)
Q Consensus 149 ~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i 216 (489)
++.|++.........+.+-+..|++.||++++++.+....+..+|..+.+.+.+..|- +..+.++++
T Consensus 315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~-~~al~~a~~ 381 (524)
T PF05977_consen 315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGV-RTALLIAGA 381 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHH
Confidence 9999998888777788889999999999999999999999988888888888777664 666665443
No 191
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.80 E-value=2.5e-08 Score=98.70 Aligned_cols=134 Identities=13% Similarity=0.045 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccc
Q 011277 89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE 168 (489)
Q Consensus 89 ~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e 168 (489)
..+...+...+...++.+..|++.||+|||+.+.++.++++++..+...++|.+.+.+.++++|++..........+..|
T Consensus 255 ~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 334 (396)
T TIGR00882 255 VFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITS 334 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777778889999999999999999999999888888777888899989999999999876665566667788
Q ss_pred cCCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH
Q 011277 169 VSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL 223 (489)
Q Consensus 169 ~~~~~~Rg~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~ 223 (489)
..+++.|+...+. ++....+|..+++++++.+.+..| |+..|.+.++..++..+
T Consensus 335 ~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 335 QFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTL 389 (396)
T ss_pred hCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHH
Confidence 8888888876665 667888898888888888877667 58888876555444433
No 192
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.79 E-value=6.8e-08 Score=96.96 Aligned_cols=112 Identities=18% Similarity=0.114 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc-chHHHHHHHHHHHhhhccccccccccccc
Q 011277 89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-RNLIGMLLGRFVVGTGMGLGPTVAALYVT 167 (489)
Q Consensus 89 ~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~-~~~~~l~~~R~l~G~g~g~~~~~~~~~i~ 167 (489)
..++..+...++..++.+++++++||+|||+++..+.++.+++.++..+. .+.+.+.+..++.|++.+...+....+++
T Consensus 258 ~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 337 (437)
T TIGR00792 258 LFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVA 337 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777788889999999999999999999999988888877766654 45666777888999999888888888888
Q ss_pred ccCC-------cccchhhhhHHHHHHHHHHHHHHHhhccc
Q 011277 168 EVSP-------PFVRGTYGAFIQIATCLGLMGSLLIGIPV 200 (489)
Q Consensus 168 e~~~-------~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l 200 (489)
|..+ ++++|...++++....+|..+++.+.+.+
T Consensus 338 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 338 DTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred hhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8875 45678999999988888877776665543
No 193
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.78 E-value=2.8e-08 Score=92.41 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=81.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277 323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP 402 (489)
Q Consensus 323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (489)
.|.....+++.+++.+...|.++||+|||+++.++.++..++..+...... +......-+..+..-|.-.
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~----------F~afv~aR~l~Gi~kgnl~ 139 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN----------FAAFVLARFLGGIFKGNLS 139 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhhhccCchH
Confidence 456677788999999999999999999999999888877775554332211 1111111222222333334
Q ss_pred cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (489)
+..++++|++++|.|+.+++.......+|..++|++..++..
T Consensus 140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 566799999999999999999999999999999998776654
No 194
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.77 E-value=1.6e-10 Score=116.52 Aligned_cols=154 Identities=17% Similarity=0.145 Sum_probs=90.8
Q ss_pred chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHh----hcch------HH
Q 011277 73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA----TTRN------LI 142 (489)
Q Consensus 73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~----~~~~------~~ 142 (489)
..+.+.++.+.+.+ .. ......+...++.++...+.||+|||+.++.+..+.+++.+..+ ..++ ..
T Consensus 275 ~~~~i~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (451)
T PF00083_consen 275 YSPSIFENAGISNS-FL---ATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSIL 350 (451)
T ss_pred cccccccccccccc-cc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34566666666544 11 11222233345667778999999999999999888887777664 1111 22
Q ss_pred HHHHHHHH-HhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHH
Q 011277 143 GMLLGRFV-VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL 221 (489)
Q Consensus 143 ~l~~~R~l-~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~ 221 (489)
.+...... .+++. +..+....+..|.+|.+.|++..++......++..+++.+...+.+..+-+.......++..+..
T Consensus 351 ~i~~~~l~~~~~~~-g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 429 (451)
T PF00083_consen 351 SIVFLALFFAFFSL-GWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAI 429 (451)
T ss_pred cceeeeeccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHH
Confidence 22222211 12222 23345667889999999999999988777777766666554444433331122222233334444
Q ss_pred HHHhhhccCC
Q 011277 222 CLAMVFCAES 231 (489)
Q Consensus 222 ~~~~~~~~Es 231 (489)
.+..+++|||
T Consensus 430 i~~~~~lpET 439 (451)
T PF00083_consen 430 IFVYFFLPET 439 (451)
T ss_pred hheeEEEeeC
Confidence 4556789999
No 195
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.76 E-value=3.4e-08 Score=93.58 Aligned_cols=173 Identities=14% Similarity=0.143 Sum_probs=128.0
Q ss_pred HHHHHHHhhhhccceeeccchhhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277 54 LVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~ 132 (489)
.++.-..+.||.+..+. .-..+.+ ++|++.. +..+..-...+..++|+++.|+|.||+|-|+++..++++..+.+
T Consensus 257 FLiA~~~~~DGv~til~--~~~~fg~~~~gls~~--~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~ 332 (438)
T COG2270 257 FLIARFFYIDGVNTILA--MGGVFGAADLGLSST--ELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA 332 (438)
T ss_pred HHHHHHHHHhhHHHHHH--HHHHHHHHHcCccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence 33344445566554221 1122444 8888644 44566666777888999999999999999999999999999988
Q ss_pred HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (489)
Q Consensus 133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~ 212 (489)
+..-+...-..+.++-.+.|.+.|+..+.+..|.++..|+++-+++.++|++..-.+...||..-..+.+..+.-|.-+.
T Consensus 333 ~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~ 412 (438)
T COG2270 333 LYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL 412 (438)
T ss_pred HHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence 88877777777788889999999999999999999999999999999999999888888888876665555444576665
Q ss_pred HHHHHHHHHHHHhhhccC
Q 011277 213 VSIVPAAILCLAMVFCAE 230 (489)
Q Consensus 213 ~~~i~~~~~~~~~~~~~E 230 (489)
...+...+-++....+|+
T Consensus 413 ~i~vll~iGl~~L~~v~~ 430 (438)
T COG2270 413 SIIVLLLIGLLLLLRVKV 430 (438)
T ss_pred HHHHHHHhhHhhEEeecC
Confidence 433333333333444444
No 196
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.75 E-value=3.3e-07 Score=92.83 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHhhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccc
Q 011277 330 VGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLL 408 (489)
Q Consensus 330 ~~i~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (489)
......+..+++|+++|| +|||+++..+.....++.+........ .. .......+..++ .....|....+.
T Consensus 59 ~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~-----~~--ll~~~~~l~~ig-~g~~~~~~~~li 130 (489)
T PRK10207 59 FAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK-----PD--LIFIALGTIAVG-NGLFKANPASLL 130 (489)
T ss_pred HHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc-----hh--HHHHHHHHHHhc-cccccCCHHHHH
Confidence 334445556789999999 999999999988888877665433210 11 111112222221 112345666789
Q ss_pred cccCCch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHH
Q 011277 409 PEIFPSR--IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGT 457 (489)
Q Consensus 409 ~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 457 (489)
.|.||++ .|+++.++.....++++.++|.+.+.+.+..||++.|.+.++
T Consensus 131 ~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 131 SKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred HHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 9999887 457789999999999999999988888888898888877544
No 197
>PRK11043 putative transporter; Provisional
Probab=98.75 E-value=3.2e-07 Score=91.00 Aligned_cols=145 Identities=17% Similarity=0.131 Sum_probs=94.9
Q ss_pred HHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHH
Q 011277 315 VFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM 391 (489)
Q Consensus 315 ~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
+.++.+.+. ++......++..++.++.|+++||+|||+.+..+.....++..+..... + ... ......+
T Consensus 32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~-~~~--l~~~~~l 103 (401)
T PRK11043 32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE-----S-AAQ--LLVLRFV 103 (401)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc-----C-HHH--HHHHHHH
Confidence 444445443 4556667788889999999999999999998877766665554433221 1 111 1111122
Q ss_pred HHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHh
Q 011277 392 FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR 468 (489)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
.+++.+ ...+....+..|.+|++.|+...+.......++..++|.+...+.+..++...+.+.+.+.++..+....
T Consensus 104 ~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 104 QAVGVC-SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHhhhH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 222111 1122334567899999999999998888888888888888887778888888887777766665554433
No 198
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.74 E-value=1.9e-07 Score=94.50 Aligned_cols=130 Identities=12% Similarity=0.053 Sum_probs=92.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcC-c
Q 011277 323 SGLANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALG-A 400 (489)
Q Consensus 323 ~~~~~~~~~i~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 400 (489)
.+.......++..++.+++|+++|| +|||+++..+.....++..+..... . .+.......+. +.+.| .
T Consensus 50 ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~-----~---~~~~~~~~~l~--g~g~g~~ 119 (475)
T TIGR00924 50 AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI-----Y---PDLIFYGLGTI--AVGSGLF 119 (475)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc-----c---HhHHHHHHHHH--Hhccccc
Confidence 3456666778888999999999999 8999999888887777665543221 1 11111112222 22222 3
Q ss_pred cccccccccccCCchh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Q 011277 401 GPVPSLLLPEIFPSRI---RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA 462 (489)
Q Consensus 401 ~~~~~~~~~e~~p~~~---r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 462 (489)
.|....+.+|.+|++. |+++.++.....++++.+++.+.+.+.+..++.+.|.+.++.++++
T Consensus 120 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 120 KANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG 184 (475)
T ss_pred cCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 4566668889998754 8999999999999999999999888888888888887766554444
No 199
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.73 E-value=7e-08 Score=89.29 Aligned_cols=99 Identities=22% Similarity=0.212 Sum_probs=79.9
Q ss_pred HHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhh
Q 011277 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYG 179 (489)
Q Consensus 100 g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~ 179 (489)
.-.-|.++.+.+.||+|||+++..+.++++++.++...+++-....+.-+..-+...+.+.+.+.|.-|++|...|+...
T Consensus 393 aefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgv 472 (528)
T KOG0253|consen 393 AEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGV 472 (528)
T ss_pred hhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcch
Confidence 33468899999999999999999999999999998877665444333333333444555667889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q 011277 180 AFIQIATCLGLMGSLLIGI 198 (489)
Q Consensus 180 ~~~~~~~~~G~~~g~~~~~ 198 (489)
+.-....-+|.++.|+++.
T Consensus 473 GtcSsmaRIggI~~p~iA~ 491 (528)
T KOG0253|consen 473 GTCSSMARIGGIFSPVIAM 491 (528)
T ss_pred hhhhhHHhhhhhhhhHHHH
Confidence 9999999999999998873
No 200
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.70 E-value=7.4e-07 Score=90.73 Aligned_cols=116 Identities=19% Similarity=0.117 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCc
Q 011277 336 LGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPS 414 (489)
Q Consensus 336 ~g~~~~g~l~dr-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 414 (489)
...+++|+++|| +|||+.+..+.....++..+..... ... . .......+.+++.+. ..|....+..|.+|+
T Consensus 72 ~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-----~~~-~-~l~~~~~l~gig~g~-~~~~~~~l~~~~f~~ 143 (500)
T PRK09584 72 GLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-----HDA-G-IVYMGMATIAVGNGL-FKANPSSLLSTCYEK 143 (500)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-----ccH-H-HHHHHHHHHHHhhhc-ccCCHHHHHHHhcCC
Confidence 334678999999 5999999888877776655443221 111 1 111122222222221 235555688999986
Q ss_pred hh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHH
Q 011277 415 RI--RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFC 459 (489)
Q Consensus 415 ~~--r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 459 (489)
+. |..+.++.+...++++.++|.+.+.+.+..|+.+.|.+.++..
T Consensus 144 ~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~ 190 (500)
T PRK09584 144 DDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGM 190 (500)
T ss_pred CchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 43 4567888888899999999999888888889988887766433
No 201
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.69 E-value=1.8e-07 Score=94.69 Aligned_cols=143 Identities=15% Similarity=0.062 Sum_probs=98.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277 323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP 402 (489)
Q Consensus 323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (489)
.|.......++..++.+++|++.||+|||+.+..+.+...++..+....... . .+..+..-++.+++. ....|
T Consensus 78 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~---~---~~~l~~~r~~~G~~~-~~~~~ 150 (465)
T TIGR00894 78 QGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG---G---IALVVFCRVIQGLAQ-GSVSP 150 (465)
T ss_pred hhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc---C---chHHHHHHHHHHHhc-ccchh
Confidence 3556667778889999999999999999998887776655554443222110 0 111111111222221 12345
Q ss_pred cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhhHHHHHHHHHHHHHHHhhccc
Q 011277 403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LGPQLLYSIFGTFCLMAVAFVKRNVVE 472 (489)
Q Consensus 403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~e 472 (489)
....+.+|.+|++.|+++.++......++..+++.+...+.+. .++...|.+.+++.++..+..+...+|
T Consensus 151 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 151 ATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 6667899999999999999999999999999999888877777 488888888888776665555444444
No 202
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=2e-05 Score=77.31 Aligned_cols=102 Identities=14% Similarity=-0.051 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcc
Q 011277 94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF 173 (489)
Q Consensus 94 ~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~ 173 (489)
.++....+.+..++.+++.|+.|.|..+.++..++....... +-.|-+-+.+.-.+.|+|.+..+.....|++|.+++|
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gf-l~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGF-LFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHH-HhcchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 666677778999999999999999999999999988766544 3456666888999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHHHHHHh
Q 011277 174 VRGTYGAFIQIATCLGLMGSLLI 196 (489)
Q Consensus 174 ~Rg~~~~~~~~~~~~G~~~g~~~ 196 (489)
.+.+..++.-.....+.++|.++
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~ 157 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGII 157 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHh
Confidence 99999988877777776666544
No 203
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.67 E-value=9.6e-08 Score=93.07 Aligned_cols=134 Identities=17% Similarity=0.075 Sum_probs=96.9
Q ss_pred cchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc-hhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHH
Q 011277 72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV 150 (489)
Q Consensus 72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l 150 (489)
..+|.+.+|.|.+ ..+.+...+.+.++..++.++.|+++||+ +||+.+..+.++.+++.++.....+..... .-.+
T Consensus 218 ~~lp~~~~~~g~~--~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 294 (355)
T TIGR00896 218 GWLPAILISHGAS--AATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALV 294 (355)
T ss_pred HHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHH
Confidence 3567777787765 34567888899999999999999999999 567777777777777776666655433322 4567
Q ss_pred HhhhcccccccccccccccCC-cccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhH
Q 011277 151 VGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR 208 (489)
Q Consensus 151 ~G~g~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr 208 (489)
.|++.|...+.....+.+..+ +++++...++.+....+|..++|.+.+.+.++.+.|.
T Consensus 295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 899998888776666665554 5667888888777777777777877766666555443
No 204
>PTZ00207 hypothetical protein; Provisional
Probab=98.66 E-value=3.3e-06 Score=86.17 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=86.9
Q ss_pred HHhHHHHHHhcCCCcchHHHHHHHHHH--HHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011277 309 FYFSSSVFKSAGLSSGLANVFVGIANL--LGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV 386 (489)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~i~~~--~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
..+.+.+.+..+.+.........++.. ...+..|++.||+|+|+++.++.+...++.++............... +.+
T Consensus 47 sv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~-l~l 125 (591)
T PTZ00207 47 NLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVR-LSV 125 (591)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHH-HHH
Confidence 345566666677665433333333333 34456899999999999999998888888776655422111111111 111
Q ss_pred HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Q 011277 387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAF 465 (489)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 465 (489)
...+.+.+.+. ..+.....+.+.|| +.|+++.|+......+++.+.+.+...+.. .++...+.+.+++.++..+.
T Consensus 126 -~r~l~G~G~~~-~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 126 -YNGLMTLGCML-FDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGIL 200 (591)
T ss_pred -HHHHHHHHHHH-HHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Confidence 11111111111 11222335678887 789999999999999988766655544433 23445566666655554443
No 205
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.66 E-value=6.9e-07 Score=100.79 Aligned_cols=142 Identities=14% Similarity=0.098 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccc
Q 011277 325 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP 404 (489)
Q Consensus 325 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (489)
+......+..++.++++|+++||+|||+++........+.......... . .. .+..+...++.+++ .....|..
T Consensus 56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~--~-~s--~~~l~~~~~l~gi~-~a~~~p~~ 129 (1140)
T PRK06814 56 LAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH--L-NS--VPLLFAALFLMGIH-SALFGPIK 129 (1140)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH--H-hh--HHHHHHHHHHHHHH-HHhhchHH
Confidence 3445566777888999999999999999754322221111111111110 0 11 11112222222222 22345777
Q ss_pred cccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccC
Q 011277 405 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET 473 (489)
Q Consensus 405 ~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et 473 (489)
..++.|++|++.|+.++|+.++...++..++|.+.+.+....++...|...+.+.++. +++...+||+
T Consensus 130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 197 (1140)
T PRK06814 130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPKT 197 (1140)
T ss_pred HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCCC
Confidence 8899999999999999999999999999999999888888777777663333333333 3333445554
No 206
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.66 E-value=1.3e-06 Score=86.59 Aligned_cols=155 Identities=11% Similarity=0.022 Sum_probs=89.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccc
Q 011277 324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV 403 (489)
Q Consensus 324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (489)
++......++..++.+..|++.||+|.|++...+.+...+..........+.. +.....+.+ -.+.++ +.+..+.
T Consensus 73 g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~-~s~~~lli~--r~l~Gi--gg~~f~~ 147 (462)
T PRK15034 73 FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPN-TPFGIFIVI--ALLCGF--AGANFAS 147 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccC-CCHHHHHHH--HHHHHH--HHHhHHH
Confidence 34444455666677778899999999999888887776666655443321111 111111111 111111 1122234
Q ss_pred ccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHhC-------------CchhhHHHHHHHHHHHHH
Q 011277 404 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL-----EQLG-------------PQLLYSIFGTFCLMAVAF 465 (489)
Q Consensus 404 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~g-------------~~~~~~~~~~~~~~~~~~ 465 (489)
....+++.||+++|+++.|+....++++..+.+.+.+.+. ...| +..+..++..+.++..++
T Consensus 148 ~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~ 227 (462)
T PRK15034 148 SMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIA 227 (462)
T ss_pred HHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4457889999999999999998888888877766654432 2222 233334555555555444
Q ss_pred HHhhcccC--CCCCHHHHHH
Q 011277 466 VKRNVVET--KGKSLQEIEI 483 (489)
Q Consensus 466 ~~~~~~et--~~~~~~e~~~ 483 (489)
.++.+++. ++.+++|.-.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~ 247 (462)
T PRK15034 228 AWSGMNDIASSRASIADQLP 247 (462)
T ss_pred HHHhCCCccccccCHHHHHH
Confidence 44444443 3445555433
No 207
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.65 E-value=2.5e-07 Score=87.54 Aligned_cols=154 Identities=29% Similarity=0.413 Sum_probs=116.3
Q ss_pred hhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcch-
Q 011277 62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN- 140 (489)
Q Consensus 62 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~- 140 (489)
....+........+.+..+++.+......++..+.+.++..+++++.|.++||+|||+.+..+.....++.++.++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (338)
T COG0477 13 LLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNV 92 (338)
T ss_pred HHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccc
Confidence 3335555566667777777654421024578899999999999999999999999998888888776666777777766
Q ss_pred -HHHHHHHHHHHhhhcccccccccccccccCCc-ccchhhhhHHHH-HHHHHHHHHHHhhcccccC--CchhHHHHHHHH
Q 011277 141 -LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEI--AGWWRICFWVSI 215 (489)
Q Consensus 141 -~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~-~~Rg~~~~~~~~-~~~~G~~~g~~~~~~l~~~--~~~wr~~f~~~~ 215 (489)
...+++.|+++|++.|...+....++.|+.|+ ++|+...+.... ...+|...++.++..+... .+ ||+.|....
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 171 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG-WRAAFLLAA 171 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHH
Confidence 88899999999999999999999999999998 678888888777 5777777777665443322 23 788666543
Q ss_pred H
Q 011277 216 V 216 (489)
Q Consensus 216 i 216 (489)
.
T Consensus 172 ~ 172 (338)
T COG0477 172 L 172 (338)
T ss_pred H
Confidence 3
No 208
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.65 E-value=1e-06 Score=87.42 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=99.4
Q ss_pred HHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277 313 SSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM 389 (489)
Q Consensus 313 ~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (489)
+...++.+.+ .++......++.+++++..+++.||+|||+.+..+..+.+++..+...... ...... .+...
T Consensus 27 ~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~---~~~~~~--~l~~~ 101 (410)
T TIGR00885 27 PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE---IMNYTL--FLVGL 101 (410)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh---hccHHH--HHHHH
Confidence 4444444544 456777888999999999999999999999999988887777655432211 011111 11112
Q ss_pred HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Q 011277 390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ------------------------ 445 (489)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------------ 445 (489)
++.+.+.+.. .+....+..|+.|++.|++..++.+....++..+++.+...+...
T Consensus 102 ~l~G~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (410)
T TIGR00885 102 FILTAGLGFL-ETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHS 180 (410)
T ss_pred HHHHhhHHHH-HhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHH
Confidence 2222222211 122234677888999999999999999999999998877665421
Q ss_pred --hCCchhhHHHHHHHHHHHHHH-HhhcccC
Q 011277 446 --LGPQLLYSIFGTFCLMAVAFV-KRNVVET 473 (489)
Q Consensus 446 --~g~~~~~~~~~~~~~~~~~~~-~~~~~et 473 (489)
.++++.|.+.+++.++..++. ....||.
T Consensus 181 ~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~ 211 (410)
T TIGR00885 181 DLASVQTPYMIIGAVVLAVALLIMLTKMPAL 211 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 246677877777665554433 2346663
No 209
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.65 E-value=2.6e-07 Score=93.90 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=101.6
Q ss_pred hhhhhcCCCCchhHHHHHH-HHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHH---hhc-chHHHHHHHHHH
Q 011277 76 SISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---ATT-RNLIGMLLGRFV 150 (489)
Q Consensus 76 ~i~~~~~~~~~~~~~~~~~-s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~---~~~-~~~~~l~~~R~l 150 (489)
.+.+++|++.+ +.++.. ....++..+|.++.|+++||+|||+.+..+.++..++..+. +.. ++...+.+.-++
T Consensus 248 ~l~~~~G~s~~--~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l 325 (491)
T PRK11010 248 FLIRGVGFDAG--EVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF 325 (491)
T ss_pred HHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 34456777644 456665 45567889999999999999999998876666555443322 222 355444545566
Q ss_pred HhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccC
Q 011277 151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230 (489)
Q Consensus 151 ~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~E 230 (489)
+.+..|...+....+..|..+++.+++..++.+....+|..+++.+.+.+.+..| |+..|.+..+..+...+....+++
T Consensus 326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5554454445556788899999999999999988888886655555556666566 688888766555555444444443
No 210
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.64 E-value=1.4e-07 Score=91.92 Aligned_cols=116 Identities=19% Similarity=0.211 Sum_probs=89.4
Q ss_pred eccchhhhhhhcCCCCchhHHHHHHHHHH-HHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc----------
Q 011277 70 VNEPLESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---------- 138 (489)
Q Consensus 70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~-~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~---------- 138 (489)
.....|.+.+++|++.+ +.+...+... ++..+|.+++|++.||+|||+.+..+.++..++..+....
T Consensus 228 ~~~~~~~~l~~~g~~~~--~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (356)
T TIGR00901 228 ATVLTTLFLLDMGFSKE--EIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGIT 305 (356)
T ss_pred HHHHHHHHHHHcCCCHH--HHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 34455666677776543 4455555433 5677999999999999999999988888877766654432
Q ss_pred -chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHH
Q 011277 139 -RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATC 187 (489)
Q Consensus 139 -~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~ 187 (489)
++.+.+..+.++.+++.+...+....++.|.+|+++||+..++++...+
T Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 306 FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 3456677889999999999999999999999999999999998876543
No 211
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.63 E-value=2.6e-07 Score=91.30 Aligned_cols=144 Identities=15% Similarity=0.004 Sum_probs=100.4
Q ss_pred hhhhhhhcCCCCchhHHHHHHHHHH-HHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh------cchHHHHHH
Q 011277 74 LESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT------TRNLIGMLL 146 (489)
Q Consensus 74 ~~~i~~~~~~~~~~~~~~~~~s~~~-~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~------~~~~~~l~~ 146 (489)
.+.+.+|.|++.+ +.++...... .+..+|.++.|++.||+|+|+.+..+.++..+....... ..+...+..
T Consensus 231 ~~~~l~~~G~s~~--~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (390)
T TIGR02718 231 SKLYLVDAGWPLE--WIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWS 308 (390)
T ss_pred hhHHHHhcCCCHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHH
Confidence 3455677777654 4466665553 466788999999999999999998877665333322211 233444455
Q ss_pred HHHHHhhhcccccccccccccccCCc-ccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277 147 GRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI 220 (489)
Q Consensus 147 ~R~l~G~g~g~~~~~~~~~i~e~~~~-~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~ 220 (489)
.-.+++++.|...+.....+.+..++ +++|+..++++....+|..+++.+++.+.+..| ++..|+......++
T Consensus 309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~ 382 (390)
T TIGR02718 309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVL 382 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHH
Confidence 55666666676666666676677766 889999999999999999999999888777666 57888765444433
No 212
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.62 E-value=1.9e-07 Score=94.11 Aligned_cols=173 Identities=15% Similarity=0.169 Sum_probs=138.3
Q ss_pred HHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhch--hhHHHHHhHHHHHHHH
Q 011277 55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG--RRRAFQLCALPMIIGA 132 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~G--Rr~~~~~~~~~~~i~~ 132 (489)
...++..+...........+|...++.+.+.+ +.....+...+...+|-++.|+++|+.. ++.++.++++..+++.
T Consensus 302 ~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~--~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 302 LLALSNLFAYLGFNVPFVYLPSYAKSLGLSSN--DAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh--hhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 33444444444444455667888888777644 4568899999999999999999999988 6777788888888889
Q ss_pred HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212 (489)
Q Consensus 133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~ 212 (489)
..+.++++++.+...-.+.|+..|........++.|+.+.++-..+.++..+...++.+.||.+.+.+.+..+.|...|+
T Consensus 380 ~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~ 459 (509)
T KOG2504|consen 380 LFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFY 459 (509)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehh
Confidence 99999999999999999999999999888888999999999999999999999999999888888887777665677787
Q ss_pred HHHHHHHHHHHHhhhcc
Q 011277 213 VSIVPAAILCLAMVFCA 229 (489)
Q Consensus 213 ~~~i~~~~~~~~~~~~~ 229 (489)
.+.+..++....++..+
T Consensus 460 ~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 460 FCGLCFLLSAVLLLILR 476 (509)
T ss_pred hcChHHHHHHHHHHHhH
Confidence 76555555444444433
No 213
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.62 E-value=2.2e-07 Score=104.95 Aligned_cols=128 Identities=18% Similarity=0.142 Sum_probs=106.3
Q ss_pred chhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 011277 73 PLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV 151 (489)
Q Consensus 73 ~~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~ 151 (489)
.+|.+ .+++|.+.. ...+++.+...+|..+|+++.|+++||+++|+++.++.++.+++.++.....+.+.+++.-++.
T Consensus 254 ~~~~~~~~~~g~s~~-~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1146)
T PRK08633 254 NFPAYAKEVLGLDNT-FQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLF 332 (1146)
T ss_pred hhHHHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34433 455676543 1457888889999999999999999999999999888888888888888888888888889999
Q ss_pred hhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc
Q 011277 152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201 (489)
Q Consensus 152 G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~ 201 (489)
|++.+...+....++.+..|+++||++.+++++...+|..+++.++..+.
T Consensus 333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888889999999999999999999888888877777665443
No 214
>PRK09848 glucuronide transporter; Provisional
Probab=98.59 E-value=5.7e-07 Score=90.60 Aligned_cols=108 Identities=18% Similarity=0.102 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhhcccccccccccccc
Q 011277 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTE 168 (489)
Q Consensus 91 ~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~--~~~~l~~~R~l~G~g~g~~~~~~~~~i~e 168 (489)
++......++..++.++.++++||+|+|+++..+.++..++.++..+.+ +++.+.+.-++.|+|.+...+...+..+|
T Consensus 267 ~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~ 346 (448)
T PRK09848 267 VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEAD 346 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333434566778999999999999999999999988888777766643 56667777889999999988888888899
Q ss_pred cCCcc-------cchhhhhHHHHHHHHHHHHHHHhhc
Q 011277 169 VSPPF-------VRGTYGAFIQIATCLGLMGSLLIGI 198 (489)
Q Consensus 169 ~~~~~-------~Rg~~~~~~~~~~~~G~~~g~~~~~ 198 (489)
..|.+ ++|...+.+++...+|..+|+.+.+
T Consensus 347 ~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g 383 (448)
T PRK09848 347 TVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA 383 (448)
T ss_pred hhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 98765 3588888998888888776665543
No 215
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.58 E-value=6.1e-07 Score=85.34 Aligned_cols=137 Identities=12% Similarity=0.106 Sum_probs=97.3
Q ss_pred ccchhhhhhh---cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHH
Q 011277 71 NEPLESISLD---LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG 147 (489)
Q Consensus 71 ~~~~~~i~~~---~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~ 147 (489)
+...+.+.+| +|++ +.+.++..+.+..++.+|.++.++++||+|+|+.+..+.++.+++.++....++... ..+
T Consensus 160 ~~w~~~yl~~~~~~g~s--~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~ 236 (310)
T TIGR01272 160 GSFLVNFLSDPHALGLP--EDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWF 236 (310)
T ss_pred HHHHHHHHHhcccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHH
Confidence 3344555543 3554 445678899999999999999999999999999998888888777766655554332 334
Q ss_pred HHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277 148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (489)
Q Consensus 148 R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~ 213 (489)
=++.|++.+..+|.......+..|++ .+.+.++... ..+|..+.|.+-+.+.+..+ .+..|++
T Consensus 237 ~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~~~-~~~Gg~i~P~l~G~lad~~g-~~~a~~v 299 (310)
T TIGR01272 237 VLALGLFNSIMFPTIFSLALNALGRH-TSQGSGILCL-AIVGGAIVPLLQGSLADCLG-IQLAFAL 299 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHH-HHhcchHHHHHHHHHHHhcc-chHHHHH
Confidence 55889999999999888888887765 4566666544 44666666665555655555 4677664
No 216
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.58 E-value=3.3e-08 Score=94.50 Aligned_cols=159 Identities=12% Similarity=0.073 Sum_probs=110.3
Q ss_pred HHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHH
Q 011277 316 FKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLT 395 (489)
Q Consensus 316 ~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
++......|+......+...+.+++.|++.||+.||+++..|..+-.++.++..... . .|.....-.+.+++
T Consensus 63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~-~-------Fwq~~l~R~~vGiG 134 (493)
T KOG1330|consen 63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN-H-------FWQVLLCRGFVGIG 134 (493)
T ss_pred cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHhccc
Confidence 333444567888888999999999999999999999999888777666665543321 1 11111111111111
Q ss_pred HhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHHHHHhhcccCC
Q 011277 396 FALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAFVKRNVVETK 474 (489)
Q Consensus 396 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~et~ 474 (489)
-.+..|+...+++|+||...|++..++.+....+|..++-.....+-+..+ |++.|.+.+++.++..+++..+++|..
T Consensus 135 -eAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 135 -EASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred -hhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 123457777789999999999999999998888776655544333333334 788898889888888888877888877
Q ss_pred CCCHHHHHH
Q 011277 475 GKSLQEIEI 483 (489)
Q Consensus 475 ~~~~~e~~~ 483 (489)
++..+|.++
T Consensus 214 rga~~~~~~ 222 (493)
T KOG1330|consen 214 RGARDEVDG 222 (493)
T ss_pred ccccccccc
Confidence 655566554
No 217
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.54 E-value=3.1e-06 Score=86.75 Aligned_cols=157 Identities=19% Similarity=0.131 Sum_probs=92.5
Q ss_pred eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchH--------
Q 011277 70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL-------- 141 (489)
Q Consensus 70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~-------- 141 (489)
.....+++.+..+.+.+. .+.......-..++..+...+.||+|||+.++.+...+.++.++.+.....
T Consensus 314 ~~~Y~~~if~~~g~~~~~---~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~ 390 (513)
T KOG0254|consen 314 VFYYSTTIFKSAGLKSDT---FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSS 390 (513)
T ss_pred EEeehHHHHHhcCCCCch---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 344456677777776543 123333444445677778999999999999999999999998887643111
Q ss_pred ---H--HHH-HHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH-HH
Q 011277 142 ---I--GML-LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW-VS 214 (489)
Q Consensus 142 ---~--~l~-~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~-~~ 214 (489)
. .+. ..-++..+.. +..++...+.+|.+|.+.|++..++......+....-...........+ +...|. ..
T Consensus 391 ~~~~~~~~~~~~~~v~~f~~-g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~-~~~~f~~f~ 468 (513)
T KOG0254|consen 391 KGAGWLAIVFLCLFIFSFAI-GWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG-IGGTFGYFG 468 (513)
T ss_pred cchhHHHHHHHHHHHHHHhc-ccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 1 112 2233333333 3334555788999999999999888766555553322222112211111 122332 23
Q ss_pred HHHHHHHH-HHhhhccCC
Q 011277 215 IVPAAILC-LAMVFCAES 231 (489)
Q Consensus 215 ~i~~~~~~-~~~~~~~Es 231 (489)
++..+... +..+++|||
T Consensus 469 ~~~~~~~~~fv~~~~pET 486 (513)
T KOG0254|consen 469 GICLLSLIIFVFFFVPET 486 (513)
T ss_pred HHHHHHHHHHheEEcccC
Confidence 33333333 566788998
No 218
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.52 E-value=1.8e-06 Score=78.06 Aligned_cols=153 Identities=17% Similarity=0.179 Sum_probs=104.3
Q ss_pred ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc-------chHHH
Q 011277 71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-------RNLIG 143 (489)
Q Consensus 71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~-------~~~~~ 143 (489)
+..-|++.+.+|+++++. ..+...-.+|..+| ++.|.+.|++|+|.++.++.+...+|-.+...+ .+++.
T Consensus 22 s~yS~~Lk~~l~~sq~~l--~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~ 98 (250)
T PF06813_consen 22 SAYSPQLKSRLGYSQSQL--NTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWL 98 (250)
T ss_pred hhhhHHHHHHhCCCHHHH--HHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHH
Confidence 334567888999876654 46677777887775 888999999999999999999888887665432 46778
Q ss_pred HHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHH-HHHhhcccccCCchhHHHHHHHHHHHHHHH
Q 011277 144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMG-SLLIGIPVKEIAGWWRICFWVSIVPAAILC 222 (489)
Q Consensus 144 l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~-g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~ 222 (489)
+.+..++.|.+.+.....+.....+.||. +||++.++.-....++..+ ..+......+ +. -+..+.+...+.++.+
T Consensus 99 ~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~-~~fll~la~~~~~v~l 175 (250)
T PF06813_consen 99 MCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DP-SSFLLFLAVLPAVVCL 175 (250)
T ss_pred HHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC-Ch-HHHHHHHHHHHHHHHH
Confidence 88888888887666555555666788875 6999999987777776433 3333322222 22 2455555555555554
Q ss_pred HHhhhcc
Q 011277 223 LAMVFCA 229 (489)
Q Consensus 223 ~~~~~~~ 229 (489)
+..+++.
T Consensus 176 ~~~~~vr 182 (250)
T PF06813_consen 176 VAMFFVR 182 (250)
T ss_pred HHhhhee
Confidence 4444443
No 219
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=2.1e-07 Score=87.21 Aligned_cols=148 Identities=16% Similarity=0.107 Sum_probs=112.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCc
Q 011277 321 LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGA 400 (489)
Q Consensus 321 ~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (489)
...|+.+...++.+++.+.+.|.+.||+|+|..+.+|+..+..+.+++.+..+.. +.+..-.+-+++.+...
T Consensus 106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~--------~l~vAR~LQgvgsA~~~ 177 (464)
T KOG3764|consen 106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYP--------MLFVARSLQGVGSAFAD 177 (464)
T ss_pred cchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhH--------HHHHHHHHhhhhHHHHH
Confidence 3467888888999999999999999999999999999999998888776543221 11111222223222221
Q ss_pred cccccccccccCCchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011277 401 GPVPSLLLPEIFPSRI-RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS 477 (489)
Q Consensus 401 ~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 477 (489)
.....+.++.||.++ |++++|+...+-.+|..++|-+.+.+++..|....|.+++.++++...+-...++.+|..+
T Consensus 178 -tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 178 -TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred -hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 122347889999887 6999999999999999999999899999999999999999999888776665565555444
No 220
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.50 E-value=3.3e-06 Score=85.70 Aligned_cols=142 Identities=15% Similarity=0.203 Sum_probs=88.0
Q ss_pred HHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011277 313 SSVFKSAGLS--SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML 390 (489)
Q Consensus 313 ~~~~~~~~~~--~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (489)
+.+..+.|-+ ..+......++..++.++.|+++|.+|||..++.+.++..++.+....+. .... .+.+..
T Consensus 68 ~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~------~~~~--~iag~~ 139 (599)
T PF06609_consen 68 PYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ------NMNT--FIAGMV 139 (599)
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC------cHHH--HHHHHH
Confidence 3444444433 23566667788888999999999999999999888877777766543221 1122 233444
Q ss_pred HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHH
Q 011277 391 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA 464 (489)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 464 (489)
+++++. |...+....++|+.|.+.|..+.++.....-.....++.+...+..+.+|+|.|.+......+.++
T Consensus 140 l~Gvga--G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~v 211 (599)
T PF06609_consen 140 LYGVGA--GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALV 211 (599)
T ss_pred HHHHhh--HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence 444332 222344456899999999988877665433222333444443333456788888887776555443
No 221
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.47 E-value=5e-07 Score=86.35 Aligned_cols=180 Identities=16% Similarity=0.047 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHH--H-----HHHHHHHHHHHHHHHhhHhhhhhchhhHHHHH
Q 011277 51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAE--G-----LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL 123 (489)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~-----~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~ 123 (489)
++++..+...|+......-.+.....+....++..++... - +-.-+...++..|..+...+.|++|||+..+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 3455666666665544444555666777777764432221 0 11112233455577788889999999999999
Q ss_pred hHHHHHHHHHHHhhcchH----HHHHHH-HHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhc
Q 011277 124 CALPMIIGASISATTRNL----IGMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI 198 (489)
Q Consensus 124 ~~~~~~i~~~l~~~~~~~----~~l~~~-R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~ 198 (489)
+.+++++..+..+...|- ..+++. -+.+=++.-+.-.....+.+|.+|.+.||..-++-..+.-+|.++|...-.
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 999999998888877661 122222 222223333444566678899999999999999988888888888887766
Q ss_pred cccc-----CCchhHHHHHHHHHHHHHHHHHhhhccCC
Q 011277 199 PVKE-----IAGWWRICFWVSIVPAAILCLAMVFCAES 231 (489)
Q Consensus 199 ~l~~-----~~~~wr~~f~~~~i~~~~~~~~~~~~~Es 231 (489)
++.+ ..+ -|+.|++.....++-.+...++|||
T Consensus 464 ~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEt 500 (538)
T KOG0252|consen 464 YLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPET 500 (538)
T ss_pred HhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeecc
Confidence 6665 334 5889988766666666667788998
No 222
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.45 E-value=8.6e-06 Score=81.32 Aligned_cols=160 Identities=13% Similarity=0.033 Sum_probs=91.3
Q ss_pred HHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHhh----hcCCchhHHHh-hHHHHHHHHHHHHHhhcc---C---CCc-
Q 011277 315 VFKSAGLSSG---LANVFVGIANLLGSVVAMVLMD----KLGRKALLQWS-FFSMAVSMAIQVAASSSY---I---PGS- 379 (489)
Q Consensus 315 ~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~d----r~grr~~~~~~-~~~~~i~~~~~~~~~~~~---~---~~~- 379 (489)
+++..+.+.. .......+..++..++.|+++| |+|||+..+.. .....++..++....... . ...
T Consensus 30 yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~ 109 (477)
T TIGR01301 30 YVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKT 109 (477)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccc
Confidence 4556666543 4445556777788889999999 59999987764 333334333332221100 0 000
Q ss_pred --hhhHHHHHHHHHHHHHHhcCccccccccccccCCchhh--hhHHHHHHHHHHHHHHHHHHHHHHH--HHHh-------
Q 011277 380 --ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIR--AKAMAVCMSVHWVINFFVGLLFLRL--LEQL------- 446 (489)
Q Consensus 380 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~------- 446 (489)
...+..+.++.+..+..+....|. .++.+|+.|++.| +.+.++.+....+|+.+++.+.... .+..
T Consensus 110 ~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~ 188 (477)
T TIGR01301 110 KPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEA 188 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccc
Confidence 111222222323333333333444 4689999998866 5688887777778777777654332 1111
Q ss_pred ------CCchhhHHHHHHHHHHHHHHHhhcccCCC
Q 011277 447 ------GPQLLYSIFGTFCLMAVAFVKRNVVETKG 475 (489)
Q Consensus 447 ------g~~~~~~~~~~~~~~~~~~~~~~~~et~~ 475 (489)
+....|.+-+++.++...+.....+|..-
T Consensus 189 ~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 189 CGVSCANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 22456666666666666677777888653
No 223
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.44 E-value=2.7e-06 Score=85.17 Aligned_cols=136 Identities=15% Similarity=0.119 Sum_probs=103.2
Q ss_pred HHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc
Q 011277 59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT 138 (489)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~ 138 (489)
..++........+...+.+.++. ++.++ ..+.......++..++.+++++++||+|||+++..+.++.+++.++..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~y~~~~v-l~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~ 310 (428)
T PF13347_consen 233 AFFLQWLAFALMNTFLPYYFTYV-LGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL 310 (428)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHH-hcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence 33444444444455555454442 33232 34567778888889999999999999999999999999999999988877
Q ss_pred c--hHHHHHHHHHHHhhhcccccccccccccccCCcc-------cchhhhhHHHHHHHHHHHHHHHh
Q 011277 139 R--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF-------VRGTYGAFIQIATCLGLMGSLLI 196 (489)
Q Consensus 139 ~--~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~-------~Rg~~~~~~~~~~~~G~~~g~~~ 196 (489)
+ |.+.+++.-++.|++.|........+++|..+.+ +.|...+.++...-+|..++..+
T Consensus 311 ~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i 377 (428)
T PF13347_consen 311 GPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI 377 (428)
T ss_pred HhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 5 9999999999999999999999999999999843 34677777777777775555544
No 224
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.41 E-value=1.9e-06 Score=84.68 Aligned_cols=150 Identities=21% Similarity=0.249 Sum_probs=111.3
Q ss_pred HHHHHHHhhhhccceeeccchhhhhhhcC-CCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277 54 LVATLSSFLFGYHLGVVNEPLESISLDLG-FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~ 132 (489)
+...+..++.+...+.++...+...+|.| .+.+ ..+...+...+.-.+.-...+++..|+|-|+++.++.+.+++=.
T Consensus 210 ~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~--~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~ 287 (400)
T PF03825_consen 210 LVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGS--TIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRW 287 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 33444445555555555556666677776 4332 23445555556666777889999999999999999999998888
Q ss_pred HHHhhc-chHHHHH----HHHHHHhhhcccccccccccccccCCcccchhhhhHHHH-HHHHHHHHHHHhhcccccCCc
Q 011277 133 SISATT-RNLIGML----LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEIAG 205 (489)
Q Consensus 133 ~l~~~~-~~~~~l~----~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~-~~~~G~~~g~~~~~~l~~~~~ 205 (489)
.+.+.. ++.+... ....++|+.-|.....+..|+.+..|++.|+++.++++. ...+|..+|..+++.+.+..+
T Consensus 288 ~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 288 LLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 787776 5544433 345679999999999999999999999999999999875 467889999988888766544
No 225
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.41 E-value=3.1e-06 Score=87.03 Aligned_cols=136 Identities=18% Similarity=0.169 Sum_probs=93.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHH-hcCccc
Q 011277 324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTF-ALGAGP 402 (489)
Q Consensus 324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 402 (489)
.+......++.++|+++.|.++||+|||+++..+.++..++.+......+ ... + ..+-+..++ ..+...
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~------~~~-~---~~~Rfl~G~~~~~~~~ 190 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN------YWM-F---LIFRFLSGFFGSGPLT 190 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc------HHH-H---HHHHHHHHhhccchhH
Confidence 45567778999999999999999999999999988887777655443322 111 1 122222222 233445
Q ss_pred cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccC
Q 011277 403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET 473 (489)
Q Consensus 403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et 473 (489)
+.+.+..|+++++.|+.+..+ ....+.++.+.+....++.. +|++.+.+.........++ +...||.
T Consensus 191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 667788999999999999999 77777777777776666655 6666666666555555444 4445575
No 226
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.40 E-value=2.3e-05 Score=74.72 Aligned_cols=149 Identities=18% Similarity=0.114 Sum_probs=94.8
Q ss_pred HhcCCCcchHHHHHH---HHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHH
Q 011277 317 KSAGLSSGLANVFVG---IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFV 393 (489)
Q Consensus 317 ~~~~~~~~~~~~~~~---i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (489)
+..+++.+...+... +...+..+.-|.+.||+|.|+....+.+...+-++......... .... +.+..+++
T Consensus 42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~---~~~~-ll~~gll~-- 115 (417)
T COG2223 42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP---STWQ-LLVIGLLL-- 115 (417)
T ss_pred cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC---chHH-HHHHHHHH--
Confidence 555666554444444 44445556789999999999998888887777777665554321 1112 22222222
Q ss_pred HHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CchhhHHHHHHHHHHHH---HHH
Q 011277 394 LTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG---PQLLYSIFGTFCLMAVA---FVK 467 (489)
Q Consensus 394 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g---~~~~~~~~~~~~~~~~~---~~~ 467 (489)
+.+-+...+...++++-||+|++|.+.|+.. .+|+|..+..++.+.+....+ +..+..++.+..++..+ +..
T Consensus 116 -G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~ 193 (417)
T COG2223 116 -GLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGM 193 (417)
T ss_pred -hcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222223344457899999999999999988 999999999988888877777 55555555544444333 223
Q ss_pred hhcccC
Q 011277 468 RNVVET 473 (489)
Q Consensus 468 ~~~~et 473 (489)
...||.
T Consensus 194 ~d~p~~ 199 (417)
T COG2223 194 NDVPEH 199 (417)
T ss_pred CCChhh
Confidence 345663
No 227
>PRK09669 putative symporter YagG; Provisional
Probab=98.40 E-value=3.1e-06 Score=85.14 Aligned_cols=108 Identities=16% Similarity=0.072 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh--cchHHHHHHHHHHHhhhcccccccccccccc
Q 011277 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTE 168 (489)
Q Consensus 91 ~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~--~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e 168 (489)
+.......+...++.+++++++||+|||+.+..+.++.+++.....+ .++.+.+.+..++.|++.+...+....+++|
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad 346 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD 346 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556677788899999999999999999887766654433222 3567777888899999999999999999999
Q ss_pred cCCcc-------cchhhhhHHHHHHHHHHHHHHHhhc
Q 011277 169 VSPPF-------VRGTYGAFIQIATCLGLMGSLLIGI 198 (489)
Q Consensus 169 ~~~~~-------~Rg~~~~~~~~~~~~G~~~g~~~~~ 198 (489)
..+.+ +.|...+.++....+|..+|+.+++
T Consensus 347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g 383 (444)
T PRK09669 347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG 383 (444)
T ss_pred hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 98632 2345667777677777666665543
No 228
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.35 E-value=7e-06 Score=85.80 Aligned_cols=122 Identities=19% Similarity=0.048 Sum_probs=83.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhc---cCC--------------------
Q 011277 321 LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS---YIP-------------------- 377 (489)
Q Consensus 321 ~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~---~~~-------------------- 377 (489)
...|+......++.+++.++.+++.||.|||+.+.++.++++++.++....... +..
T Consensus 68 ~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~ 147 (633)
T TIGR00805 68 SSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCME 147 (633)
T ss_pred CcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccC
Confidence 345667777889999999999999999999999999988888888776543200 000
Q ss_pred ------------------C--chhhHHHHHHHHHHHHHHhc-CccccccccccccCCchhhhhHHHHHHHHHHHHHHHHH
Q 011277 378 ------------------G--SASLYLSVGGMLMFVLTFAL-GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVG 436 (489)
Q Consensus 378 ------------------~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~ 436 (489)
. .....+.+.. -+..+.+. ...++...++.|.+|++.|+...++......++..+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~ 225 (633)
T TIGR00805 148 NLTQALRPTQCPSECQKQHKESLMWLLFLVS--QLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGY 225 (633)
T ss_pred CCCCCccccccccccccccCCCceehhhHHH--HHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHH
Confidence 0 0011111111 11222222 12355667999999999999999999999988888888
Q ss_pred HHHHHHHH
Q 011277 437 LLFLRLLE 444 (489)
Q Consensus 437 ~~~~~l~~ 444 (489)
.+.+.+.+
T Consensus 226 llgg~l~~ 233 (633)
T TIGR00805 226 LLGSFCLQ 233 (633)
T ss_pred HHHHHHHh
Confidence 77666554
No 229
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.35 E-value=4.3e-06 Score=84.82 Aligned_cols=108 Identities=8% Similarity=0.032 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh-----cchHHHHHHHHHHHhhhcccccccccc
Q 011277 90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-----TRNLIGMLLGRFVVGTGMGLGPTVAAL 164 (489)
Q Consensus 90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~-----~~~~~~l~~~R~l~G~g~g~~~~~~~~ 164 (489)
.++..+...++..++.+++++++||+|||+++..+.++.+++.+.... ..+.+.+++.-++.|++.+...+...+
T Consensus 268 ~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~a 347 (473)
T PRK10429 268 FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVI 347 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666778899999999999999999999888877666555432 345666667778889998888888888
Q ss_pred cccccCCc-------ccchhhhhHHHHHHHHHHHHHHHhh
Q 011277 165 YVTEVSPP-------FVRGTYGAFIQIATCLGLMGSLLIG 197 (489)
Q Consensus 165 ~i~e~~~~-------~~Rg~~~~~~~~~~~~G~~~g~~~~ 197 (489)
+++|..+. ++.|...+......-+|..+++.+.
T Consensus 348 m~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~ 387 (473)
T PRK10429 348 MVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFI 387 (473)
T ss_pred HHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999662 2234577777777667665555443
No 230
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.35 E-value=2.2e-05 Score=77.95 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=94.3
Q ss_pred HHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHhhhc-----CCch-hHHHhhHHHHHHHHHHHHHhhccCCCchhh
Q 011277 312 SSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKL-----GRKA-LLQWSFFSMAVSMAIQVAASSSYIPGSASL 382 (489)
Q Consensus 312 ~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~-----grr~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 382 (489)
.|..+++.|.+.. +....... .+..++.|+++||+ |||| .+..+....+++...+.... + ....
T Consensus 22 ~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~----~-~~~~ 94 (402)
T PRK11902 22 LQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP----P-HAAL 94 (402)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC----c-cchH
Confidence 3455666676643 22222221 57778999999999 7776 56565555555554433221 1 1111
Q ss_pred HHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhhHHHHHHHHH
Q 011277 383 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LGPQLLYSIFGTFCLM 461 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~~ 461 (489)
+......++.. .+.....|....+.+|.+|+++|+++.++......++..+++.+...+.+. .||...|.+.+++.++
T Consensus 95 ~~l~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~ 173 (402)
T PRK11902 95 WPLAGLAVLVA-FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLA 173 (402)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence 21111111222 223334566667899999999999999999888788888888777666664 4888888887776655
Q ss_pred HHHHHHhhcccCC
Q 011277 462 AVAFVKRNVVETK 474 (489)
Q Consensus 462 ~~~~~~~~~~et~ 474 (489)
..+. ....||++
T Consensus 174 ~~l~-~~~~~e~~ 185 (402)
T PRK11902 174 GALT-TLWAPEPE 185 (402)
T ss_pred HHHH-HHhcCCCc
Confidence 5443 34567664
No 231
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.29 E-value=5.8e-05 Score=74.04 Aligned_cols=129 Identities=16% Similarity=0.100 Sum_probs=89.2
Q ss_pred HHHHHHhcCCC----cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011277 312 SSSVFKSAGLS----SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG 387 (489)
Q Consensus 312 ~~~~~~~~~~~----~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
.+.+.++.|++ .|...-....+..+..+.+|++.||+|-|+++..+.+.-.+...+.....+ ......
T Consensus 49 ~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S--------l~~L~i 120 (511)
T TIGR00806 49 TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS--------VWHMQL 120 (511)
T ss_pred HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 34444455543 456667778899999999999999999999988887776666665554321 111111
Q ss_pred HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 011277 388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLL 451 (489)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 451 (489)
.-++++++-+... ..+.++...+|++.|+++.|+..+...+|.++++.+... ....||...
T Consensus 121 ~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y 181 (511)
T TIGR00806 121 MEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISY 181 (511)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhH
Confidence 2222333222222 455688899999999999999999999999999988766 556777543
No 232
>PRK10133 L-fucose transporter; Provisional
Probab=98.27 E-value=8.6e-06 Score=81.63 Aligned_cols=131 Identities=15% Similarity=0.055 Sum_probs=94.1
Q ss_pred hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccc
Q 011277 79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLG 158 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~ 158 (489)
+.+|.+ +.+.++....+.++..+|.++.+++.||+|||+++..+.++.+++..+..+.++.. .+..=.+.|++.+..
T Consensus 288 ~~~g~s--~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i 364 (438)
T PRK10133 288 EIPGMT--AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQ 364 (438)
T ss_pred hcCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHH
Confidence 345665 44567888999999999999999999999999999888877777666665655542 345567899999999
Q ss_pred cccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHH
Q 011277 159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214 (489)
Q Consensus 159 ~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~ 214 (489)
+|.......|..|++ .+.+.++..+....|.+++++.| .+.+..|.-|..|++.
T Consensus 365 ~P~~~s~a~~~~~~~-~~~as~l~~~~~~g~~~~~~i~G-~l~~~~g~~~~~~~v~ 418 (438)
T PRK10133 365 YPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMG-FVSDAAGNIPTAELIP 418 (438)
T ss_pred HHHHHHHHHcccchh-hccchhHHhHHhccchHHHHHHH-HHHHhccchHHHHHHH
Confidence 999999888887764 56777777654433344444444 4444443236666653
No 233
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.23 E-value=2e-05 Score=77.27 Aligned_cols=112 Identities=19% Similarity=0.240 Sum_probs=87.3
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhhccc
Q 011277 80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGL 157 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~--~~~~l~~~R~l~G~g~g~ 157 (489)
++.++.++....+.......+..++.+++.+|++|+|||+++.++.++.+++..+.-+.+ +....++..++.++|.+.
T Consensus 264 ~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~ 343 (467)
T COG2211 264 TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGI 343 (467)
T ss_pred EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhc
Confidence 455666776666667777777778899999999999999999999999999988877665 778888899999999999
Q ss_pred ccccccccccccCCcc-----cc--hhhhhHHHHHHHHHHH
Q 011277 158 GPTVAALYVTEVSPPF-----VR--GTYGAFIQIATCLGLM 191 (489)
Q Consensus 158 ~~~~~~~~i~e~~~~~-----~R--g~~~~~~~~~~~~G~~ 191 (489)
..+...+.++|..+-. +| |...+.+....=+|..
T Consensus 344 ~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~a 384 (467)
T COG2211 344 ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLA 384 (467)
T ss_pred cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 9999999999887632 22 4444555544444533
No 234
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.10 E-value=7.2e-06 Score=79.49 Aligned_cols=133 Identities=16% Similarity=0.086 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccccccccccccc
Q 011277 90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV 169 (489)
Q Consensus 90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~ 169 (489)
.|...+.-.+.-++.-.+..++.+|+|.|+.++++..++++=.+++++++|.+.+.+.+.+.|+-.+........|+++.
T Consensus 261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~ 340 (412)
T PF01306_consen 261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH 340 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchhhhhHH-HHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH
Q 011277 170 SPPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL 223 (489)
Q Consensus 170 ~~~~~Rg~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~ 223 (489)
+|++..++...+. +.+..+|..+.+..++.+.+..| .+..|++.+...+...+
T Consensus 341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~l 394 (412)
T PF01306_consen 341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTL 394 (412)
T ss_dssp S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHH
Confidence 9998876665553 56777777777777777766666 36667664444443333
No 235
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.05 E-value=0.0018 Score=67.59 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=95.5
Q ss_pred hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh-hchhhHHHHHhHHHHHHHHHHHhhcch--------HHHHHHHHH
Q 011277 79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASISATTRN--------LIGMLLGRF 149 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D-r~GRr~~~~~~~~~~~i~~~l~~~~~~--------~~~l~~~R~ 149 (489)
+.+|.+.+. ...+...+..-.-+.++++|.++| ++||++.+.++.++..+|.++.+++.. ....+++=.
T Consensus 16 ~~lg~~~~~--A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLa 93 (654)
T TIGR00926 16 NFLGFSEST--STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLA 93 (654)
T ss_pred HHcCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHH
Confidence 345665433 334444555555577889999999 599999999999999999888766421 123556778
Q ss_pred HHhhhcccccccccccccccCCccc---chhhhhHHHHHHHHHHHHHHHhhccccc-------CCchhHHHHHHHHHHHH
Q 011277 150 VVGTGMGLGPTVAALYVTEVSPPFV---RGTYGAFIQIATCLGLMGSLLIGIPVKE-------IAGWWRICFWVSIVPAA 219 (489)
Q Consensus 150 l~G~g~g~~~~~~~~~i~e~~~~~~---Rg~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~~~wr~~f~~~~i~~~ 219 (489)
+..+|.|+.-+...+...|.+++++ |..+..++..+.++|.++++.+...+.+ ..+ |...|.+..+..+
T Consensus 94 Lia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~-~~~aF~i~~i~m~ 172 (654)
T TIGR00926 94 LIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC-YPLAFGVPAILMI 172 (654)
T ss_pred HHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc-hHHHHHHHHHHHH
Confidence 8888999999999999999998654 4455666667777777766665544432 124 5777776544444
Q ss_pred HH
Q 011277 220 IL 221 (489)
Q Consensus 220 ~~ 221 (489)
+.
T Consensus 173 ia 174 (654)
T TIGR00926 173 LA 174 (654)
T ss_pred HH
Confidence 33
No 236
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.02 E-value=6.8e-05 Score=66.78 Aligned_cols=73 Identities=23% Similarity=0.299 Sum_probs=50.9
Q ss_pred HHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccc-cccccCCcccchhh
Q 011277 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAAL-YVTEVSPPFVRGTY 178 (489)
Q Consensus 103 ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~-~i~e~~~~~~Rg~~ 178 (489)
+...+.|.|+||-|||+..+.-.+.+++++ +.-.+++|-+++++|.+.|++.+..+..--. ++.|.- ++|+.-
T Consensus 87 LFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~Fe 160 (454)
T KOG4332|consen 87 LFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN--EKRGFE 160 (454)
T ss_pred HHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh--hccCCh
Confidence 444677889999999998766555554433 4456788999999999999998876654333 455543 455543
No 237
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.00 E-value=6.4e-05 Score=62.79 Aligned_cols=104 Identities=18% Similarity=0.104 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCc
Q 011277 93 VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172 (489)
Q Consensus 93 ~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~ 172 (489)
..++......+.+++.+.+.+++|.|+.++++.+++.+-.. +-+-++.+.++.+-.+.|++.+..+.....++.+..++
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~-~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIA-SFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 45555666778889999999999999999999999886443 33567788899999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHhh
Q 011277 173 FVRGTYGAFIQIATCLGLMGSLLIG 197 (489)
Q Consensus 173 ~~Rg~~~~~~~~~~~~G~~~g~~~~ 197 (489)
+.|++..+++......+.++|.++.
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887777666766665554
No 238
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.99 E-value=3.8e-05 Score=77.58 Aligned_cols=149 Identities=11% Similarity=0.006 Sum_probs=108.6
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc----------chHHHHHHHHH
Q 011277 80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT----------RNLIGMLLGRF 149 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~----------~~~~~l~~~R~ 149 (489)
++|.+.+ +.|+......++..+|....+++.+|++.|+++.++.++.+++....... ++.+.....-+
T Consensus 282 ~lG~s~~--~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~ 359 (468)
T TIGR00788 282 CLPGGPS--FSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI 359 (468)
T ss_pred cCCCCcc--hhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence 4566544 45777777778999999999999999999999999999998877554311 33334555678
Q ss_pred HHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc-----h-hHHHHH-HHHHHHHHHH
Q 011277 150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-----W-WRICFW-VSIVPAAILC 222 (489)
Q Consensus 150 l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-----~-wr~~f~-~~~i~~~~~~ 222 (489)
+++++.+........++.+.+|++.+|...++++...++|..+++.+|+.+.+..| . .++... ++.++.++.+
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l 439 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPL 439 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence 88888888888889999999999999999999999999998888887766544332 1 122222 2334444444
Q ss_pred HHhhhccC
Q 011277 223 LAMVFCAE 230 (489)
Q Consensus 223 ~~~~~~~E 230 (489)
.+.+++|+
T Consensus 440 ~~~~llP~ 447 (468)
T TIGR00788 440 PLLHLLPR 447 (468)
T ss_pred HHHHhCCC
Confidence 44457775
No 239
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.0003 Score=66.90 Aligned_cols=160 Identities=17% Similarity=0.126 Sum_probs=106.1
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHH
Q 011277 314 SVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFV 393 (489)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (489)
..++....++++.......+.+++++..+++.+|+|.|+-+..++.++++++.+..-+.... .. .......|.
T Consensus 41 ~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~----~y---~~FL~~lFi 113 (422)
T COG0738 41 EVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK----SY---GFFLVALFI 113 (422)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh----hH---HHHHHHHHH
Confidence 33444444567788888899999999999999999999999999999999888775433211 11 111122233
Q ss_pred HHHhcCc-cccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hCCchhhH
Q 011277 394 LTFALGA-GPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-------------------LGPQLLYS 453 (489)
Q Consensus 394 ~~~~~~~-~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------------~g~~~~~~ 453 (489)
.+.+.+. -.....|+..+.|++..+.-+.+...++.+|+.++|.+...+..+ ..+...|.
T Consensus 114 la~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl 193 (422)
T COG0738 114 LASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYL 193 (422)
T ss_pred HHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHH
Confidence 3333321 112223778888988889999999999999999999987776552 12456677
Q ss_pred HHHHHHHHHHHHH-HhhcccCCCCCHHH
Q 011277 454 IFGTFCLMAVAFV-KRNVVETKGKSLQE 480 (489)
Q Consensus 454 ~~~~~~~~~~~~~-~~~~~et~~~~~~e 480 (489)
.++..+++..+.. ....||.+-.+.++
T Consensus 194 ~~~~~lvll~v~~~~~k~p~~~~~~~~~ 221 (422)
T COG0738 194 ILAGLLVLLAVLILLSKLPDLQVAAPSL 221 (422)
T ss_pred HHHHHHHHHHHHHHhccCCcCCcccccc
Confidence 7776665555433 34456665444333
No 240
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.00019 Score=71.69 Aligned_cols=153 Identities=20% Similarity=0.143 Sum_probs=101.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277 323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP 402 (489)
Q Consensus 323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (489)
.++.......|.+++.+.++++.||+|-|+++..+.++..+..++.=..... + .+..+..-++.+++.+. ..|
T Consensus 75 k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~---~---~~~~~~~R~lqGl~~g~-~~p 147 (466)
T KOG2532|consen 75 KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI---G---FYLLLVLRFLQGLGQGV-LFP 147 (466)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh---c---chhhHHHHHHhHHHHhH-HHh
Confidence 4566777889999999999999999999999888777666655543222111 0 01111112222222221 235
Q ss_pred cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhhHHHHHHHHHHHHHH-Hhh--cccC-CCCC
Q 011277 403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LGPQLLYSIFGTFCLMAVAFV-KRN--VVET-KGKS 477 (489)
Q Consensus 403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~-~~~--~~et-~~~~ 477 (489)
....+.+.-.|++.|++..++..+...++.++.-.+.+.+-++ .||...|++.+++.++..+.. ++. -|+. +..+
T Consensus 148 a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is 227 (466)
T KOG2532|consen 148 AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNIS 227 (466)
T ss_pred hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCC
Confidence 6666888999999999999999988877776665566666666 899999999998876665432 222 3443 4455
Q ss_pred HHHHH
Q 011277 478 LQEIE 482 (489)
Q Consensus 478 ~~e~~ 482 (489)
.+|.+
T Consensus 228 ~~El~ 232 (466)
T KOG2532|consen 228 EKELK 232 (466)
T ss_pred HHHHH
Confidence 55543
No 241
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=97.96 E-value=0.00024 Score=64.39 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=83.7
Q ss_pred HHHHHhHHHHHHhcCCCcchHH---HHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhh
Q 011277 306 NAIFYFSSSVFKSAGLSSGLAN---VFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL 382 (489)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 382 (489)
+....|.+.+.+..+++....+ ....++..+| ++.|.+.|++|.+.++.++.....++..++........+....+
T Consensus 19 Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~ 97 (250)
T PF06813_consen 19 YTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVW 97 (250)
T ss_pred cchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchH
Confidence 3445678888888888765433 3344666554 78899999999999999998888888877766655443322111
Q ss_pred HHHHHHHHHHHHHHhcCc-cccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 383 YLSVGGMLMFVLTFALGA-GPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (489)
.+. +..+..+.+.+. ......-..+.|| ++||++.|+.-...-+.+.+...+......
T Consensus 98 ~~~---~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 98 LMC---LFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHH---HHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 111 111111111111 1111123457898 689999999998888877777766554443
No 242
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.93 E-value=4.1e-05 Score=56.06 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=66.1
Q ss_pred eeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHH
Q 011277 69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM 144 (489)
Q Consensus 69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l 144 (489)
.+++.+|.+.+|.+++.+ +.+++.+...+||.+|++...++.++..+|+.+..+.+...+....+++.++++..
T Consensus 10 ayTplLP~M~~~~~ls~~--~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w 83 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLS--QAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW 83 (85)
T ss_pred HHHhHhHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 467789999999988754 56899999999999999999999999999999999999999999999998887654
No 243
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.92 E-value=7.9e-05 Score=66.99 Aligned_cols=125 Identities=22% Similarity=0.156 Sum_probs=87.7
Q ss_pred hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHH-HHHHHhhcchHHHHHHHHHHHhhhc
Q 011277 77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII-GASISATTRNLIGMLLGRFVVGTGM 155 (489)
Q Consensus 77 i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i-~~~l~~~~~~~~~l~~~R~l~G~g~ 155 (489)
+.+.+|+|..+ .+.+.+....-.++.+++.|.++||+||+...+.+..+..+ +.....++ ++.=..+-.+.|++.
T Consensus 291 F~~rfGlS~~~--a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsy 366 (459)
T KOG4686|consen 291 FQKRFGLSAVS--AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSY 366 (459)
T ss_pred HHHhhCCChhh--ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhH
Confidence 67888887543 34556665555678899999999999999888766544333 33222222 111223456677766
Q ss_pred ccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc
Q 011277 156 GLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205 (489)
Q Consensus 156 g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~ 205 (489)
........-.++-+.|.++.|++.++.+...++|..+-+++.+.+.+..+
T Consensus 367 sllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 367 SLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 55544445567788899999999999999999999988998888877655
No 244
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.91 E-value=5.9e-05 Score=73.62 Aligned_cols=126 Identities=15% Similarity=0.207 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhhhc-CCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCC
Q 011277 335 LLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP 413 (489)
Q Consensus 335 ~~g~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 413 (489)
-+..+++||++||+ |+|+.+..+.+++.++.+++.... ..+....++. +.+.. ......=|..+....|+||
T Consensus 75 Y~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---~~~~~gl~i~---L~~I~-iG~Gl~K~NiS~llg~ly~ 147 (498)
T COG3104 75 YLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---VSGPGGLYIG---LALII-VGTGLFKPNISSLLGELYP 147 (498)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---cccccHHHHH---HHHHH-hccccccccHHHHHHHhcC
Confidence 35678899999995 999999999998888887765432 0112222222 22212 2222234777888999997
Q ss_pred chh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277 414 SRI--RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK 467 (489)
Q Consensus 414 ~~~--r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
++. |-.+.++.....++|+++.|.+.+.+-+..|+...|...++-...+.+..+
T Consensus 148 ~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 148 KDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred CCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 543 667777777778899999999988888888988888888877766665443
No 245
>PRK11462 putative transporter; Provisional
Probab=97.87 E-value=0.00022 Score=71.93 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhhcccccccccccccc
Q 011277 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTE 168 (489)
Q Consensus 91 ~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~--~~~~l~~~R~l~G~g~g~~~~~~~~~i~e 168 (489)
+.....+.++..+|.+++++++||+|||+++..+..+.++..++..+.+ +...+.+.-++.|++.+...+....+++|
T Consensus 266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad 345 (460)
T PRK11462 266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD 345 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778889999999999999999998765554444333333322 22234444566777777666666677777
Q ss_pred cCC
Q 011277 169 VSP 171 (489)
Q Consensus 169 ~~~ 171 (489)
..+
T Consensus 346 ~~d 348 (460)
T PRK11462 346 TVD 348 (460)
T ss_pred hHh
Confidence 766
No 246
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=97.85 E-value=0.0003 Score=65.86 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=106.4
Q ss_pred ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh-chhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHH
Q 011277 71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF 149 (489)
Q Consensus 71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~ 149 (489)
..-+|.+..|-|+|.. +.|+..+...+.....++....+++| -.+|+.......++.+|.+...+.+.-..+.. -+
T Consensus 228 ~~WLP~ili~~G~sa~--~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~ 304 (395)
T COG2807 228 IGWLPAILIDRGLSAA--EAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-AL 304 (395)
T ss_pred HHHHHHHHHHcCCCHH--HhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HH
Confidence 3457999999998744 56899999999999999999999994 66888888888888887777666665544444 39
Q ss_pred HHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHH---HHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277 150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL---MGSLLIGIPVKEIAGWWRICFWVSIVPAAI 220 (489)
Q Consensus 150 l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~---~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~ 220 (489)
+.|+|.|+.++.+...+.+-.+..++. ..+-.+++.+|. ..||.+.+.+.+..|.|+...+......+.
T Consensus 305 llG~G~G~~F~laL~li~~rs~~a~~A--a~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~ 376 (395)
T COG2807 305 LLGLGQGGAFPLALTLILLRSSDAAIA--AALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLL 376 (395)
T ss_pred HHhCccchHHHHHHHHHHhhcCChHHH--HHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHH
Confidence 999999999999999988888655442 333344555553 456667677777777788877654443333
No 247
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.85 E-value=0.00018 Score=71.65 Aligned_cols=139 Identities=15% Similarity=0.131 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccccccccc
Q 011277 330 VGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP 409 (489)
Q Consensus 330 ~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (489)
.++..++.+..-|.++||+|||..+........+......... +|+.+ +....+...........|.+
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---------~~~~~---~~~l~g~~~~~~s~~~a~va 138 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---------YWFFL---LLGLSGGFSAIFSVGFAYVA 138 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---------HHHhh---hcccccchhhhhhhhhhhee
Confidence 4567778888889999999999988777666555554443332 11111 00000111111223445889
Q ss_pred ccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 011277 410 EIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480 (489)
Q Consensus 410 e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e 480 (489)
+.-.++.|...+|+.+..-..+..++|..........+....+.+-.+..++..++....+||+..++.++
T Consensus 139 dis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~ 209 (463)
T KOG2816|consen 139 DISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS 209 (463)
T ss_pred eccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence 99999999999999999888888888888877777777777777778888888888888999997766554
No 248
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.80 E-value=0.022 Score=56.18 Aligned_cols=117 Identities=23% Similarity=0.254 Sum_probs=65.4
Q ss_pred HhcCCCcch---HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCC--chhhHHHHHHHHH
Q 011277 317 KSAGLSSGL---ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG--SASLYLSVGGMLM 391 (489)
Q Consensus 317 ~~~~~~~~~---~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 391 (489)
...|++... .-....+..+.|+++..++.+|+|..+.=.++.....++..+..........+ .......+.++..
T Consensus 286 ~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~ 365 (432)
T PF06963_consen 286 KSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIAL 365 (432)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Confidence 334655443 33344567778899999999999987765555554444333322111111111 1122222222222
Q ss_pred HHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHH
Q 011277 392 FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFF 434 (489)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~ 434 (489)
--++ -.+.......+.-|..|++.|++..|+-.+.+++.-.+
T Consensus 366 SR~G-LW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll 407 (432)
T PF06963_consen 366 SRIG-LWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELL 407 (432)
T ss_pred HHHH-HHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHH
Confidence 2121 11223334456789999999999999999998875544
No 249
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.76 E-value=1.2e-05 Score=78.53 Aligned_cols=137 Identities=20% Similarity=0.122 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccccccccccc
Q 011277 88 LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT 167 (489)
Q Consensus 88 ~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~ 167 (489)
...|.....-..|-.+.-++.+++.+|+|+-+++.+++.++.+=-+.....+|.|..+-..++||+..+..+.....|++
T Consensus 406 ~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s 485 (618)
T KOG3762|consen 406 TLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYAS 485 (618)
T ss_pred eeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556676777788899999999999999999998887777888999999999999999999999999999999
Q ss_pred ccCCcccchhhhhHHHH-HHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHh
Q 011277 168 EVSPPFVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225 (489)
Q Consensus 168 e~~~~~~Rg~~~~~~~~-~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~ 225 (489)
+..||+.|..+.++.+. ...+|--.|.++|+.+.+..+ -|..|...++..++.+++.
T Consensus 486 ~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 486 HVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACLVTLALF 543 (618)
T ss_pred hhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHHHHHHHH
Confidence 99999999999888754 445677778888887777665 3888877655555544443
No 250
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=97.71 E-value=0.00083 Score=62.37 Aligned_cols=345 Identities=12% Similarity=0.127 Sum_probs=179.2
Q ss_pred HHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhh
Q 011277 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYG 179 (489)
Q Consensus 100 g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~ 179 (489)
.+.++-.+.=.+.|..--||+++.-.+...+...+.-+.++.+.+=+.-++-|...+... ..++|+-+..+|+++.++.
T Consensus 54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEI-AYysYIYs~Vd~~~Yqrvt 132 (433)
T KOG3810|consen 54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEI-AYYSYIYSKVDPEMYKRVT 132 (433)
T ss_pred HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHH-hhhheeeeecCHHHHHHHH
Confidence 334444556678999988999999888888888888899999999999999998776554 6778899999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcccccCCch-hHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHH-HHHHHHhCCCch
Q 011277 180 AFIQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAE-AEFEKLLGGSHV 257 (489)
Q Consensus 180 ~~~~~~~~~G~~~g~~~~~~l~~~~~~-wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~-~~~~~~~~~~~~ 257 (489)
+.--.+...|-..|.+.+-.+.....+ ....-.+......+..+...++|.-+|-+..+.++++.. .+.+........
T Consensus 133 ~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~ 212 (433)
T KOG3810|consen 133 GYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMNPQASY 212 (433)
T ss_pred HHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhcCccchh
Confidence 998888888887777776555433211 233333443333344455566776665444433333211 111111000000
Q ss_pred hHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcC-CC----cchHHHHHHH
Q 011277 258 KSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAG-LS----SGLANVFVGI 332 (489)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~i 332 (489)
.+..++... .-...+.+..++++ .....+++....++++-..+|.+..-+... -+ -|..-....+
T Consensus 213 ~~~l~~~~~------~l~~~l~~~y~np~----ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tl 282 (433)
T KOG3810|consen 213 MSYLRGAFV------LLWRDLQECYSNPR----LLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTL 282 (433)
T ss_pred hHHHHHHHH------HHHHHHHHHhcCch----hhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHH
Confidence 000000000 00001122222222 222334444444555666677776666542 11 1333344455
Q ss_pred HHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccC
Q 011277 333 ANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIF 412 (489)
Q Consensus 333 ~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 412 (489)
...++.+..|.+--.+.|..-+.++......+..++....+. ..|.+-.+.++|...|.+...-... -+++..
T Consensus 283 LGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~------~Iw~~Ya~yvlfr~~y~l~itiA~~-~iA~nL 355 (433)
T KOG3810|consen 283 LGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQ------HIWVCYAGYVLFRVIYQLTITIATF-QIARNL 355 (433)
T ss_pred HHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhccc------ceehhhhhHHHHHhhHhhhhhHHHH-HHHHhh
Confidence 666777888888666666533333322222222222222211 1233333444454444433222222 233333
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CchhhHHHHHHHHHHHHH
Q 011277 413 PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-----------PQLLYSIFGTFCLMAVAF 465 (489)
Q Consensus 413 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-----------~~~~~~~~~~~~~~~~~~ 465 (489)
..+.-|-..|+..++.-+...+.+.+. .|.-| +..-|.+.+++.++....
T Consensus 356 ~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~ 416 (433)
T KOG3810|consen 356 SSELFGLVFGINTFVALILQSILTLIV---VDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGI 416 (433)
T ss_pred hhhhheeeeehHHHHHHHHHHhheEEE---EcccccCCCcceeEEEEeehHHHHHHHHHHHHHH
Confidence 455555555655554443333333221 12111 123466677777666543
No 251
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.70 E-value=0.07 Score=53.42 Aligned_cols=111 Identities=6% Similarity=-0.083 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHH-HHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc--c--h------------------------
Q 011277 90 EGLVVSMCLGGAFIG-STLSGWIADGVGRRRAFQLCALPMIIGASISATT--R--N------------------------ 140 (489)
Q Consensus 90 ~~~~~s~~~~g~~ig-~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~--~--~------------------------ 140 (489)
..++-+...+...+. .++.+++++|++|++++......+...-.+.++. + +
T Consensus 45 i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~ 124 (472)
T TIGR00769 45 IPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIA 124 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHH
Confidence 345555555555555 7889999999999999988777776655554433 1 0
Q ss_pred ---HHHHHHHHHHHhhhcccccc-cccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccc
Q 011277 141 ---LIGMLLGRFVVGTGMGLGPT-VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV 200 (489)
Q Consensus 141 ---~~~l~~~R~l~G~g~g~~~~-~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l 200 (489)
.|...+.-....+-...... +-..+++|.++.+|-.|..++++++.++|.++++.+...+
T Consensus 125 ~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 125 ILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222233333333333 5677899999999999999999999999988777664443
No 252
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.00055 Score=66.01 Aligned_cols=97 Identities=15% Similarity=0.208 Sum_probs=68.5
Q ss_pred HHHHHhhHhhhh----hchhhHHHHHhHHHH-HHHHHHHhhcchHHHHH------------HHHHHHh-----hhccccc
Q 011277 102 FIGSTLSGWIAD----GVGRRRAFQLCALPM-IIGASISATTRNLIGML------------LGRFVVG-----TGMGLGP 159 (489)
Q Consensus 102 ~ig~~~~g~l~D----r~GRr~~~~~~~~~~-~i~~~l~~~~~~~~~l~------------~~R~l~G-----~g~g~~~ 159 (489)
.+-+++.|..+| ||||||.++...... .++.++...+.++..++ +.-++.| ++.-...
T Consensus 81 ~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~q 160 (498)
T KOG0637|consen 81 LLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQ 160 (498)
T ss_pred ceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhh
Confidence 366888999999 599999888765544 55555666665544322 2223333 4444566
Q ss_pred ccccccccccCCcccchh-hhhHHHHHHHHHHHHHHHhhc
Q 011277 160 TVAALYVTEVSPPFVRGT-YGAFIQIATCLGLMGSLLIGI 198 (489)
Q Consensus 160 ~~~~~~i~e~~~~~~Rg~-~~~~~~~~~~~G~~~g~~~~~ 198 (489)
..+.++++|.+..+++.+ +.+++.....+|..+|...|.
T Consensus 161 gp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 161 GPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 678899999998777766 999999999988887777765
No 253
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.49 E-value=0.016 Score=56.19 Aligned_cols=123 Identities=15% Similarity=0.099 Sum_probs=71.9
Q ss_pred HHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhH
Q 011277 102 FIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF 181 (489)
Q Consensus 102 ~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~ 181 (489)
.+-.++..+..+|+.-+.=...+.++.+++-++.++++|.+.-+++=.+.+++.|.....-..+ +..+++. ..+.
T Consensus 73 l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~~----~l~~ 147 (402)
T PF02487_consen 73 LLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGKS----SLSA 147 (402)
T ss_pred HHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCcc----cccc
Confidence 3445566677787653333445566777888888999999998999999999988877666565 4455543 3444
Q ss_pred HHHHHHHHHHHHHHhhcccccCCch-hHHHHHHH-HHHHHHHHHHhhhccC
Q 011277 182 IQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVS-IVPAAILCLAMVFCAE 230 (489)
Q Consensus 182 ~~~~~~~G~~~g~~~~~~l~~~~~~-wr~~f~~~-~i~~~~~~~~~~~~~E 230 (489)
+..+...+.++|+..=..+.+ .++ -|..+... .+|.+.....++.+|.
T Consensus 148 wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 148 WSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred ccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 555555555555443223333 222 35455443 3443333333334443
No 254
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.039 Score=52.32 Aligned_cols=143 Identities=12% Similarity=0.084 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh-----hchhhHHHHHhH-
Q 011277 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-----GVGRRRAFQLCA- 125 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D-----r~GRr~~~~~~~- 125 (489)
.+.++.+-..+.|...+... ++|-+.+.-|.|.++. + +.+....-+ .--+.|.|+.| |+|||+..+.-.
T Consensus 32 ~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~--a-~fS~ay~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q 106 (510)
T KOG3574|consen 32 SILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ--A-IFSFAYWPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQ 106 (510)
T ss_pred hHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh--h-hhhhhhhHH-HHHHHHHhhhHHHHHHhhccccceeeehH
Confidence 34444444566677777777 8888887667765542 1 233333332 33578999999 999999865322
Q ss_pred HHHHHHHHHHh-----------hcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHH
Q 011277 126 LPMIIGASISA-----------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL 194 (489)
Q Consensus 126 ~~~~i~~~l~~-----------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~ 194 (489)
.+.+....+.+ ..++...+...-++.=+.++..-...-.....+-.+++-|.++....++...|.+.+.
T Consensus 107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~ 186 (510)
T KOG3574|consen 107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN 186 (510)
T ss_pred HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence 12111111111 1233333333334444444444444555666677788899998888888888887776
Q ss_pred Hhhcc
Q 011277 195 LIGIP 199 (489)
Q Consensus 195 ~~~~~ 199 (489)
.+-..
T Consensus 187 ~ifLa 191 (510)
T KOG3574|consen 187 VVFLA 191 (510)
T ss_pred ceeeE
Confidence 66443
No 255
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.29 E-value=0.00095 Score=48.46 Aligned_cols=61 Identities=26% Similarity=0.353 Sum_probs=49.1
Q ss_pred cceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHH
Q 011277 66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128 (489)
Q Consensus 66 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~ 128 (489)
..+...|.+|...++.|++. .+.|.+.++..+...++++++|.++||+||++..+....++
T Consensus 15 ~~g~~~Pfl~~~~~~~Gl~~--~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 15 ALGCLYPFLPLYLKQLGLSP--SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHhhhhHhhhhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34456677777888878764 46789999999999999999999999999999887765543
No 256
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.0023 Score=64.36 Aligned_cols=144 Identities=16% Similarity=0.089 Sum_probs=95.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277 323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP 402 (489)
Q Consensus 323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (489)
-+.......++..++.+.++.+.||++..+.+....+..++..++.....+ . ...+..-++.+..-+. ..|
T Consensus 83 l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s------~--~~~ialr~llGl~es~-~wP 153 (495)
T KOG2533|consen 83 LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS------F--PGLIALRFLLGLFESG-GWP 153 (495)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh------h--HHHHHHHHHHHHHhcc-cch
Confidence 345667788999999999999999999555443322222221111111110 1 1111222223333333 346
Q ss_pred cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCchhhHHHHHHHHHHHHHHHhhcccCCC
Q 011277 403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE------QLGPQLLYSIFGTFCLMAVAFVKRNVVETKG 475 (489)
Q Consensus 403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~ 475 (489)
....++..-|.++.|++-+|+-+....+++++++++...++. ..||++.|++-|++.+...+++++.+|+-.-
T Consensus 154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 666688999999999999999999999999999987665432 3578999999999999988888777776443
No 257
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.23 E-value=0.0054 Score=58.97 Aligned_cols=120 Identities=17% Similarity=0.214 Sum_probs=94.9
Q ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh-hchhhHHHHHhHHHHHHHHHH---HhhcchHHHHHHHHHHHhh
Q 011277 78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASI---SATTRNLIGMLLGRFVVGT 153 (489)
Q Consensus 78 ~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D-r~GRr~~~~~~~~~~~i~~~l---~~~~~~~~~l~~~R~l~G~ 153 (489)
.+-||++..+. .-..+.+..|..+|-...|++.. |.++|+.-.+++.+..++-.+ ++...+.+.+..+-++.|+
T Consensus 236 g~Vfgmsv~eT--T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~ 313 (403)
T PF03209_consen 236 GEVFGMSVGET--TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGL 313 (403)
T ss_pred hHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 34567765543 46778888898999999998777 788887776776666555433 4556778888899999999
Q ss_pred hcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 011277 154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP 199 (489)
Q Consensus 154 g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~ 199 (489)
+.|.........+-|..++++-|.+++.++..+.++..++.+.|+.
T Consensus 314 g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~ 359 (403)
T PF03209_consen 314 GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGA 359 (403)
T ss_pred hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888889999999999999999999998887777777654
No 258
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.16 E-value=0.0056 Score=59.23 Aligned_cols=115 Identities=18% Similarity=0.147 Sum_probs=73.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277 323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP 402 (489)
Q Consensus 323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (489)
..+.++++.+..++-.+.+.|+.||+|-|....++.....++..+=........++.....+.+.+-..-......-.+
T Consensus 81 ~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~- 159 (480)
T KOG2563|consen 81 ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILG- 159 (480)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhc-
Confidence 3467788888899999999999999999999999888888877765444333222222211222222222222111111
Q ss_pred cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 011277 403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL 438 (489)
Q Consensus 403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 438 (489)
++.-...--||+++|+++..+..+.+.+|..++..+
T Consensus 160 lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 160 LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 222234456899999999999998888777665543
No 259
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.05 E-value=0.021 Score=59.79 Aligned_cols=130 Identities=13% Similarity=0.144 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCC
Q 011277 335 LLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP 413 (489)
Q Consensus 335 ~~g~~~~g~l~dr-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 413 (489)
-+..+++|++.|+ +||++.+..+.++..++..++...................++.+ +....-+.-|...+...|.++
T Consensus 37 yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaL-ia~G~GgiKp~vsaf~gdqf~ 115 (654)
T TIGR00926 37 YLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLAL-IALGTGGIKPCVSAFGGDQFE 115 (654)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHH-HHhhccccccCchhhhHhhcC
Confidence 3556678899997 69999888887777777665543221111011111111112111 111122233666677788886
Q ss_pred ch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCchhhHHHHHHHHHHHHH
Q 011277 414 SR---IRAKAMAVCMSVHWVINFFVGLLFLRLLEQL-------GPQLLYSIFGTFCLMAVAF 465 (489)
Q Consensus 414 ~~---~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------g~~~~~~~~~~~~~~~~~~ 465 (489)
++ .|.+...+.....++++.+++.+.+.+.+.. ++...|.+.+++.+++.+.
T Consensus 116 ~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 116 ERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 43 4777888888889999998888777665433 4566777666666555443
No 260
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=96.80 E-value=0.16 Score=48.25 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=78.4
Q ss_pred HHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011277 314 SVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML 390 (489)
Q Consensus 314 ~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (489)
..|++.++.. +..+........+...+.|.+.||+|||+.-+...++..++++.... +... ..+.+-+
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~------~~~~---~L~~GRv 129 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS------SNYP---VLLLGRV 129 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc------cccH---HHHHHHH
Confidence 3455666653 34444555566666677889999999999776666666665543211 1111 1111111
Q ss_pred HHHHHHhcCcc----ccccccccccCCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHH
Q 011277 391 MFVLTFALGAG----PVPSLLLPEIFPSRIRAKAMAVCMSV-HWVINFFVGLLFLRLLEQL--GPQLLYSIFGTFCLMAV 463 (489)
Q Consensus 391 ~~~~~~~~~~~----~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~--g~~~~~~~~~~~~~~~~ 463 (489)
+.++..++-.. =+....-..=+|.+..+...+..... +.+.+++++.+...+.+.. |+..+|..-..+.+++.
T Consensus 130 lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~ 209 (354)
T PF05631_consen 130 LGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAA 209 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 11111110000 00011112335666556655554433 3344555565555555554 44677776666666666
Q ss_pred HHHHhhcccCCCC
Q 011277 464 AFVKRNVVETKGK 476 (489)
Q Consensus 464 ~~~~~~~~et~~~ 476 (489)
+++...=+|..|.
T Consensus 210 ~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 210 VLILKTWPENYGD 222 (354)
T ss_pred HHHHhcccccCCC
Confidence 6665555666554
No 261
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=96.75 E-value=0.011 Score=58.51 Aligned_cols=132 Identities=16% Similarity=0.212 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccc
Q 011277 324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV 403 (489)
Q Consensus 324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (489)
|......-.+.++..++.+++++|+|+-+++..++....+=.+.+..... .|..+..=++-.+.++.-+. .
T Consensus 409 Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n--------~W~vLPieilqgit~aliWa-a 479 (618)
T KOG3762|consen 409 GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN--------PWMVLPIEILQGITHALIWA-A 479 (618)
T ss_pred eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC--------chheeeHHHHHHHHHHHHHH-H
Confidence 45555666788888899999999999988876665444333332222211 11111111222222222111 2
Q ss_pred ccccccccCCchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHH
Q 011277 404 PSLLLPEIFPSRIRAKAMAVCMSVHW-VINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA 464 (489)
Q Consensus 404 ~~~~~~e~~p~~~r~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 464 (489)
...|++...|++.|++++++...... +|-.++.++.+.+....|....|-++++.|++..+
T Consensus 480 ~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~ 541 (618)
T KOG3762|consen 480 IISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLA 541 (618)
T ss_pred HHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence 23488899999999999999876643 23444555555555667766777777776655543
No 262
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=96.65 E-value=0.047 Score=54.58 Aligned_cols=155 Identities=22% Similarity=0.225 Sum_probs=86.1
Q ss_pred HHhcCCCcchHHHHHHHHHH--HHHHHHHHHhhhcC-----CchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011277 316 FKSAGLSSGLANVFVGIANL--LGSVVAMVLMDKLG-----RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388 (489)
Q Consensus 316 ~~~~~~~~~~~~~~~~i~~~--~g~~~~g~l~dr~g-----rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
.++.+.+.........+..+ ...++.|.++|-+. ||+-+.++.++..++...+....... . .... ....
T Consensus 17 ~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~-~-s~~~--~~~~ 92 (433)
T PF03092_consen 17 KDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE-S-SAAI--AVVL 92 (433)
T ss_pred HHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc-c-hhhh--HHHH
Confidence 34566665555555555555 35578899999873 44555555554443333333222111 1 1111 1111
Q ss_pred HHHHHHHHhcCccccccccccccC---CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Q 011277 389 MLMFVLTFALGAGPVPSLLLPEIF---PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAF 465 (489)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 465 (489)
+++..+++.+. ..+.-...+|.. |.+ |+.-++.+.....+++.++..+.+++.+..++...|.+.+.+..+..+.
T Consensus 93 l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~ 170 (433)
T PF03092_consen 93 LFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIV 170 (433)
T ss_pred HHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence 11112222211 111222344443 555 8888999988888898888888888888888888888777776666555
Q ss_pred HHhhcccCCCC
Q 011277 466 VKRNVVETKGK 476 (489)
Q Consensus 466 ~~~~~~et~~~ 476 (489)
.....+|.+.+
T Consensus 171 ~~~~~~e~~~~ 181 (433)
T PF03092_consen 171 ALFLLEERKVR 181 (433)
T ss_pred HHHhhhhcccc
Confidence 55566664433
No 263
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.61 Score=45.25 Aligned_cols=32 Identities=3% Similarity=-0.151 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHhhhcccccccccccccccCC
Q 011277 140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171 (489)
Q Consensus 140 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~ 171 (489)
.+...++.-.+.+.+.|..........++.-+
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~ 147 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLFPS 147 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhcCCH
Confidence 45566677788888888777776666665543
No 264
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.10 E-value=0.022 Score=55.77 Aligned_cols=105 Identities=11% Similarity=0.154 Sum_probs=78.2
Q ss_pred HHHHHhHHHHHHHHHHHhhc---ch------HHHHHHHHHHHhhhcccccccccccccccCCccc---chhhhhHHHHHH
Q 011277 119 RAFQLCALPMIIGASISATT---RN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV---RGTYGAFIQIAT 186 (489)
Q Consensus 119 ~~~~~~~~~~~i~~~l~~~~---~~------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~---Rg~~~~~~~~~~ 186 (489)
+++.++.+++.+|.++...+ .+ ...+.++-.+.++|.|+.=+....+.+|.+++++ |.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 45677888888888873332 22 2568888999999999999999999999998763 556777888999
Q ss_pred HHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011277 187 CLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA 224 (489)
Q Consensus 187 ~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~ 224 (489)
++|.+++......+.+..+ |.+.|++..+..++.++.
T Consensus 82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~ 118 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIV 118 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHH
Confidence 9999999888888877777 588888765544444443
No 265
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.09 E-value=0.088 Score=52.41 Aligned_cols=144 Identities=15% Similarity=0.154 Sum_probs=86.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCC-chhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277 324 GLANVFVGIANLLGSVVAMVLMDKLGR-KALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP 402 (489)
Q Consensus 324 ~~~~~~~~i~~~~g~~~~g~l~dr~gr-r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (489)
|+......++..+++++.++...|.+. |+.++.+.+++.++.++..... +.+.. ..++.+.+-++ .+.+.+...
T Consensus 74 G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~--~~~~~-~~y~mL~~R~l--~Gvg~~n~a 148 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALA--YVPNG-VKYLMLVARIL--TGVGVGNFA 148 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHH--hcccc-hHHHHHHHHHH--cCcCcccHH
Confidence 566667789999999999999999885 6667788888888887763332 12222 23332222222 233333444
Q ss_pred cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CchhhHHHHHHHHHHHHHHHh
Q 011277 403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG--------------PQLLYSIFGTFCLMAVAFVKR 468 (489)
Q Consensus 403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--------------~~~~~~~~~~~~~~~~~~~~~ 468 (489)
....|.++.--.+.|.++++......-++..++|.+ ...+..++ +..+-.+++++.++..+++..
T Consensus 149 ~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~-q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~ 227 (488)
T KOG2325|consen 149 VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI-QLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF 227 (488)
T ss_pred HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH-HHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence 566788887667888888888776444555555543 22222111 123344566666666666666
Q ss_pred hcccC
Q 011277 469 NVVET 473 (489)
Q Consensus 469 ~~~et 473 (489)
+.+|-
T Consensus 228 ~f~E~ 232 (488)
T KOG2325|consen 228 FFKEV 232 (488)
T ss_pred heeec
Confidence 66653
No 266
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=95.97 E-value=0.79 Score=45.57 Aligned_cols=140 Identities=15% Similarity=0.097 Sum_probs=72.0
Q ss_pred HHHHhhhhccceeeccchhhhhhh--cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh-----hchhhHHHHHhHH---
Q 011277 57 TLSSFLFGYHLGVVNEPLESISLD--LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-----GVGRRRAFQLCAL--- 126 (489)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D-----r~GRr~~~~~~~~--- 126 (489)
.+-.++.|.-.+.....+|-+.++ -+.+.++. + +.|+...-+. --++|.|+.| |+||||..++-.=
T Consensus 6 ~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~--~-~fSla~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~ 81 (544)
T PF13000_consen 6 VLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ--A-IFSLASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS 81 (544)
T ss_pred HHHHHHcCcccccccccchhhhccccCCCChhHh--e-eeeeeechhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence 334466677777766677777666 34554432 2 1222211221 2356666666 8999999765332
Q ss_pred ---HHHHHHHH----------Hhh-------cchHH--HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHH
Q 011277 127 ---PMIIGASI----------SAT-------TRNLI--GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI 184 (489)
Q Consensus 127 ---~~~i~~~l----------~~~-------~~~~~--~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~ 184 (489)
+..++.-. -.. ..+.. .+...-++.=+-.+-.-...-...-.+..++.++.++.-..+
T Consensus 82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv 161 (544)
T PF13000_consen 82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV 161 (544)
T ss_pred HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence 22222211 000 00111 112222112122222223444555566678889999888888
Q ss_pred HHHHHHHHHHHhhccc
Q 011277 185 ATCLGLMGSLLIGIPV 200 (489)
Q Consensus 185 ~~~~G~~~g~~~~~~l 200 (489)
+...|..++..+...+
T Consensus 162 G~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 162 GQTAGYFLSFTVFLAL 177 (544)
T ss_pred HhhhhHHHHHHHHHhh
Confidence 8888887776664433
No 267
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=95.75 E-value=0.048 Score=53.04 Aligned_cols=106 Identities=20% Similarity=0.199 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHH-----HHHHHhhcchHHHHHHHHHHHhhhccccccccccc
Q 011277 91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII-----GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165 (489)
Q Consensus 91 ~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i-----~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~ 165 (489)
-+-...|.+|-.++---...+ |+ |++.+.+.+-..- ...+.-+.++.+.+++.-+..|+-.|..+......
T Consensus 284 ~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~ 359 (402)
T PF02487_consen 284 RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR 359 (402)
T ss_pred HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 345555666654442221111 33 4555554443322 22233356888988899999999999999999999
Q ss_pred ccccCCcccchhhhhHHHHHHHHHHHHHHHhhccc
Q 011277 166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV 200 (489)
Q Consensus 166 i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l 200 (489)
+.|-.|+++|...++..+++-++|..++.+++.++
T Consensus 360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888654
No 268
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=95.72 E-value=0.35 Score=49.87 Aligned_cols=147 Identities=17% Similarity=0.257 Sum_probs=104.2
Q ss_pred eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh-hchhhHHHHHhHHHHHHHHHHHhhcc---------
Q 011277 70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASISATTR--------- 139 (489)
Q Consensus 70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D-r~GRr~~~~~~~~~~~i~~~l~~~~~--------- 139 (489)
....+..+.+++|.+.. ...-.++.+..-....++..++++| .+||=+++.++.++..+|.++...+.
T Consensus 57 ~~nlv~ylt~~~~~~~~--~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~ 134 (571)
T KOG1237|consen 57 VSNLVTYLTLELHASGG--GAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM 134 (571)
T ss_pred hhHHHHHHHHHhccchH--HHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence 34455667778887653 3345677777777788899999999 58999999999998888755432211
Q ss_pred ----------------hHHHHHHHHHHHhhhcccccccccccccccCC---ccc-ch--hhhhHHHHHHHHHHHHHHHhh
Q 011277 140 ----------------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP---PFV-RG--TYGAFIQIATCLGLMGSLLIG 197 (489)
Q Consensus 140 ----------------~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~---~~~-Rg--~~~~~~~~~~~~G~~~g~~~~ 197 (489)
....+..+..+..+|.|+.-+....+-+|-++ +++ +. ....++.....+|.+++..+-
T Consensus 135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~ 214 (571)
T KOG1237|consen 135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL 214 (571)
T ss_pred ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence 11245567777888999988888899999998 322 23 577888888899988877776
Q ss_pred cccccCCchhHHHHHHHHHHHH
Q 011277 198 IPVKEIAGWWRICFWVSIVPAA 219 (489)
Q Consensus 198 ~~l~~~~~~wr~~f~~~~i~~~ 219 (489)
....+..+ |.+-|.+......
T Consensus 215 vyiq~~~~-w~lgf~i~~~~~~ 235 (571)
T KOG1237|consen 215 VYIQDNVG-WKLGFGIPTVLNA 235 (571)
T ss_pred Hhhhhccc-ceeeccHHHHHHH
Confidence 66666666 5877776543333
No 269
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=95.57 E-value=2.9 Score=41.81 Aligned_cols=90 Identities=14% Similarity=0.054 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhc----ccccCC-chhH--HHHH
Q 011277 140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI----PVKEIA-GWWR--ICFW 212 (489)
Q Consensus 140 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~----~l~~~~-~~wr--~~f~ 212 (489)
.++..++.-++.|++.|.......++.+ .+|++ .+..+..+.+++.+++.++-. ...+.. ..++ ..|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 4666677778899998888877777666 55554 333334444443333322211 111100 1122 3344
Q ss_pred HHHHHHHHHHHHhhhccCChHH
Q 011277 213 VSIVPAAILCLAMVFCAESPHW 234 (489)
Q Consensus 213 ~~~i~~~~~~~~~~~~~Esp~~ 234 (489)
+..+..++.++....++.+|..
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~~ 201 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPFA 201 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHHH
Confidence 4444444444555566777654
No 270
>PRK03612 spermidine synthase; Provisional
Probab=95.57 E-value=0.25 Score=50.58 Aligned_cols=131 Identities=15% Similarity=0.052 Sum_probs=65.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHH-HHH-HHHHHH----hhcchH-HHHHHHHHHHhhhcc
Q 011277 84 NGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL-PMI-IGASIS----ATTRNL-IGMLLGRFVVGTGMG 156 (489)
Q Consensus 84 ~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~-~~~-i~~~l~----~~~~~~-~~l~~~R~l~G~g~g 156 (489)
+.+..+++.+.+.++.|.++|+.+.+++.++--|+....-..+ +.+ +...+. +....+ ..+...-++.|+..|
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIG 125 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567899999999999999999988754434332221111 111 011011 111111 112334556677778
Q ss_pred cccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhh-cccccCCchhHHHHHHHH
Q 011277 157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG-IPVKEIAGWWRICFWVSI 215 (489)
Q Consensus 157 ~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~-~~l~~~~~~wr~~f~~~~ 215 (489)
+..|....+..+.... +-|...+-......+|.++|.++. ..+....|-++..+.++.
T Consensus 126 ~~~Pl~~~~~~~~~~~-~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~ 184 (521)
T PRK03612 126 MEIPLLMRILQRIRDQ-HLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGS 184 (521)
T ss_pred HHHHHHHHHHHhcccc-chhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 7777765555443221 123334444455555555554443 233333343455555443
No 271
>PF12832 MFS_1_like: MFS_1 like family
Probab=95.53 E-value=0.1 Score=37.83 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=34.8
Q ss_pred HhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh
Q 011277 310 YFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS 357 (489)
Q Consensus 310 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~ 357 (489)
-|.+..+++.|.+. |......-+..+++.++.|.++||+++++.....
T Consensus 21 Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~ 71 (77)
T PF12832_consen 21 PFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG 71 (77)
T ss_pred hhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence 34455566677764 4455555677889999999999999998876543
No 272
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=95.27 E-value=3.9 Score=41.43 Aligned_cols=101 Identities=11% Similarity=0.033 Sum_probs=62.8
Q ss_pred HHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc---------ch----------------------HHHHHHHH
Q 011277 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---------RN----------------------LIGMLLGR 148 (489)
Q Consensus 100 g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~---------~~----------------------~~~l~~~R 148 (489)
...+...+..+++++++|.+++......+...-.+.++. ++ .|...+.-
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 334556778999999999999988777776654444431 11 01111111
Q ss_pred HHHhhhcccccc-cccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccc
Q 011277 149 FVVGTGMGLGPT-VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV 200 (489)
Q Consensus 149 ~l~G~g~g~~~~-~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l 200 (489)
++.-+-...... .-..+.+|.++.+|-.+..++++.+.++|.+++......+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111112222 3467889999999999999999999999876555544333
No 273
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.07 E-value=1.6 Score=43.55 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=72.6
Q ss_pred HHHHHHHhhHhhhh---hchhhHHHHHhHHHHHHHHHHHhhc------------------chHHHHHHHHHHHhhhcccc
Q 011277 100 GAFIGSTLSGWIAD---GVGRRRAFQLCALPMIIGASISATT------------------RNLIGMLLGRFVVGTGMGLG 158 (489)
Q Consensus 100 g~~ig~~~~g~l~D---r~GRr~~~~~~~~~~~i~~~l~~~~------------------~~~~~l~~~R~l~G~g~g~~ 158 (489)
|..++....+.+++ ++||++.+..+..+..++.++.-.. +++...++.-++.|++-+..
T Consensus 291 g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~ 370 (461)
T KOG3098|consen 291 GEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACF 370 (461)
T ss_pred HHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHH
Confidence 44455566677775 6999999999988888877766432 24556677789999999988
Q ss_pred cccccccccccCCcccchhhhhHHHHHHHHHHHHHHHh
Q 011277 159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI 196 (489)
Q Consensus 159 ~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~ 196 (489)
......++.+.. +++|..+.+++-.-..++..++.+.
T Consensus 371 ~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 371 NTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 888888999999 6778888888877777777665554
No 274
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=94.00 E-value=1.5 Score=40.55 Aligned_cols=108 Identities=24% Similarity=0.220 Sum_probs=60.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhc-Cccc
Q 011277 324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFAL-GAGP 402 (489)
Q Consensus 324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 402 (489)
+.......+...++.+..|.+.||+|||+.+..+.....++......... .......+. ... .+... ...|
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~--~g~~~~~~~~ 113 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN-----VGLALLLIL-RLL--QGLGGGGLLP 113 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-----chHHHHHHH-HHH--HHhhhHHHHH
Confidence 45555666777777789999999999997766665442332222111111 011111111 111 11111 2345
Q ss_pred cccccccccCCc-hhhhhHHHHHHH-HHHHHHHHHHHHH
Q 011277 403 VPSLLLPEIFPS-RIRAKAMAVCMS-VHWVINFFVGLLF 439 (489)
Q Consensus 403 ~~~~~~~e~~p~-~~r~~~~~~~~~-~~~~~~~~~~~~~ 439 (489)
....+..|.+|. +.|+...+.... ...++..+++.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T COG0477 114 VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLA 152 (338)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666788899987 678888888777 4555556665433
No 275
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=93.99 E-value=3.2 Score=34.76 Aligned_cols=102 Identities=14% Similarity=0.080 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccc
Q 011277 327 NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSL 406 (489)
Q Consensus 327 ~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (489)
.........+.+++++.+.+++|.|+.+.++.+...+-...... +. .+..+..-.+.+++.+.-+ .....
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------~~---~~~l~~~s~l~G~~~a~lW-~aqg~ 112 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------PN---SYTLYPASALLGFGAALLW-TAQGT 112 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------hh---HHHHHHHHHHHhhhhHHhh-HhhhH
Confidence 34445566778888899999999999888776655443332221 11 1121122222222222211 12234
Q ss_pred cccccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 011277 407 LLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL 438 (489)
Q Consensus 407 ~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 438 (489)
|+.+...++.|++..++...+......+++.+
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 67788888899999998888877665555544
No 276
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=93.75 E-value=6.1 Score=39.32 Aligned_cols=138 Identities=13% Similarity=0.055 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHH----HHHHHHHHHHhhccCCC---chhhHHHHHHHHHHHHH---
Q 011277 326 ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM----AVSMAIQVAASSSYIPG---SASLYLSVGGMLMFVLT--- 395 (489)
Q Consensus 326 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~----~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--- 395 (489)
..+...+..++.+..-|.+.||..|.+......+.. ++++.++.......... .............+...
T Consensus 43 ygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~L 122 (432)
T PF06963_consen 43 YGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERL 122 (432)
T ss_pred HHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 334455566666667788999999988766554432 23333322221111110 11111112222222221
Q ss_pred HhcCcc-ccccccccccC--CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHH
Q 011277 396 FALGAG-PVPSLLLPEIF--PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV 463 (489)
Q Consensus 396 ~~~~~~-~~~~~~~~e~~--p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 463 (489)
.+.+.. .+-.=++..+. +++..++..+...-+--+...++|.+.+.+.+..++.....+.++..++..
T Consensus 123 as~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~ 193 (432)
T PF06963_consen 123 ASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASV 193 (432)
T ss_pred HHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 111111 11111222232 344455555555555555788899988888776776655555555554443
No 277
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=93.44 E-value=3.2 Score=37.72 Aligned_cols=52 Identities=10% Similarity=0.018 Sum_probs=29.1
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHhhccc---cc-CCchhHHHHHHHHHHHHHHHHH
Q 011277 173 FVRGTYGAFIQIATCLGLMGSLLIGIPV---KE-IAGWWRICFWVSIVPAAILCLA 224 (489)
Q Consensus 173 ~~Rg~~~~~~~~~~~~G~~~g~~~~~~l---~~-~~~~wr~~f~~~~i~~~~~~~~ 224 (489)
++|+..+.+-..+..+|.++..+..... .+ ....|++++.+.++..++-++.
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIl 57 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLIL 57 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777778888865544432211 11 1122788887755444443333
No 278
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=93.22 E-value=9.9 Score=37.97 Aligned_cols=111 Identities=9% Similarity=-0.047 Sum_probs=69.3
Q ss_pred HHHHHHHHH-HHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc---------chH-------------------
Q 011277 91 GLVVSMCLG-GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---------RNL------------------- 141 (489)
Q Consensus 91 ~~~~s~~~~-g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~---------~~~------------------- 141 (489)
.++=+.+.+ +..+..++.+++.++.-|.+++-.....+..+-+++++. +++
T Consensus 64 ~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~il 143 (509)
T COG3202 64 SFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFIL 143 (509)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeE
Confidence 444444444 556777889999999999999988888877777776642 110
Q ss_pred ----HHHHHHHHHHhhhcccccc-cccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc
Q 011277 142 ----IGMLLGRFVVGTGMGLGPT-VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201 (489)
Q Consensus 142 ----~~l~~~R~l~G~g~g~~~~-~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~ 201 (489)
|...+.-.+.=+-...... .-.....|++..+|-.|..+++++..+++.+++..+...+.
T Consensus 144 i~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~ 208 (509)
T COG3202 144 IVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLS 208 (509)
T ss_pred eecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111111111111111 23445788898899999999999999998766655554443
No 279
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=91.57 E-value=2 Score=42.87 Aligned_cols=106 Identities=11% Similarity=0.054 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhhchhh--HHHH--HhHHHHHHHHHHHhhc---------chHHHHHHHHHHHhhhcccc
Q 011277 92 LVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQ--LCALPMIIGASISATT---------RNLIGMLLGRFVVGTGMGLG 158 (489)
Q Consensus 92 ~~~s~~~~g~~ig~~~~g~l~Dr~GRr--~~~~--~~~~~~~i~~~l~~~~---------~~~~~l~~~R~l~G~g~g~~ 158 (489)
.....|.+|-.+|-.+..+.. .-++| .++. ++-+++.-.-++|..- ++-+..++.-++.|+..|-.
T Consensus 311 i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~ 389 (437)
T TIGR00939 311 ICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYL 389 (437)
T ss_pred HHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHH
Confidence 566677888888777554321 11222 3333 2333444444455322 45566777899999999999
Q ss_pred cccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhc
Q 011277 159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI 198 (489)
Q Consensus 159 ~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~ 198 (489)
...+..+..+..++++|..+..+...+..+|...|..++.
T Consensus 390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889899999999999999999999999999988887764
No 280
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=91.40 E-value=16 Score=36.83 Aligned_cols=41 Identities=12% Similarity=-0.119 Sum_probs=36.1
Q ss_pred cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL 443 (489)
Q Consensus 403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~ 443 (489)
+.|.+.+|++..+...+-.++....++++..+++.+...+.
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778999999999999999999999999999998765544
No 281
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=90.47 E-value=1.3 Score=43.32 Aligned_cols=113 Identities=12% Similarity=0.011 Sum_probs=66.5
Q ss_pred hHHHhhHHHHHHHHHHHHHhhccCC-CchhhHHHHHHHHHHHHHHhcCccccccccccccCCch---hhhhHHHHHHHHH
Q 011277 353 LLQWSFFSMAVSMAIQVAASSSYIP-GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSR---IRAKAMAVCMSVH 428 (489)
Q Consensus 353 ~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~ 428 (489)
.+..+.+...++.+++......... ..........++.+..+ ...+.=|+...+.+|.|+++ .|.+.........
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~-G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAV-GTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHH-HHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHh-ccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 4556666666666664433322111 11111122222332222 22234466777888888765 4667777778888
Q ss_pred HHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277 429 WVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 429 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
++|+.++....+.+.+..|+...|.+.++..+++.+..
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence 99999888888888788888888888887777766544
No 282
>PRK03612 spermidine synthase; Provisional
Probab=89.03 E-value=9.4 Score=39.19 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCchhhHHHHHHHHHH
Q 011277 417 RAKAMAVCMSVHWVINFFVGLLFLRLL-EQLGPQLLYSIFGTFCLMA 462 (489)
Q Consensus 417 r~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~~~~~ 462 (489)
-+...|-...++.+|+.+++++.+.++ ..+|......+.+.+.++.
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~ 189 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLA 189 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 356677788888888888888766544 4567655544555444333
No 283
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=88.84 E-value=0.099 Score=49.68 Aligned_cols=34 Identities=15% Similarity=0.013 Sum_probs=1.8
Q ss_pred ccccccccccCCchhhhhHHHHHHHHHHHHHHHH
Q 011277 402 PVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFV 435 (489)
Q Consensus 402 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~ 435 (489)
.+...+.++..+++.|-.+-.+......+|-.++
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~G 300 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIG 300 (309)
T ss_dssp HHHH------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566777777777666665555444443333
No 284
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=87.69 E-value=5.5 Score=29.36 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=42.0
Q ss_pred HHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHH
Q 011277 312 SSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV 369 (489)
Q Consensus 312 ~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~ 369 (489)
.|.+.++.+++ .++......+++++|++...++.++..+++.+..+.+...++...+.
T Consensus 15 LP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma 75 (85)
T PF06779_consen 15 LPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA 75 (85)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 35555666655 35677788899999999999999987777877777666666555443
No 285
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=87.07 E-value=11 Score=36.91 Aligned_cols=106 Identities=16% Similarity=0.072 Sum_probs=74.9
Q ss_pred HHHHHH-HHHHHHHHHHhhHhhhhhchhhHHHHHhHH--HHHHHHHHH------hhcchHHHHHHHHHHHhhhccccccc
Q 011277 91 GLVVSM-CLGGAFIGSTLSGWIADGVGRRRAFQLCAL--PMIIGASIS------ATTRNLIGMLLGRFVVGTGMGLGPTV 161 (489)
Q Consensus 91 ~~~~s~-~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~--~~~i~~~l~------~~~~~~~~l~~~R~l~G~g~g~~~~~ 161 (489)
.+.... |.+...+|.+...++-++= ||...+.+.+ ++.-.-.+| ..-.+-+++++.-.+.|+..|-....
T Consensus 285 ~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl 363 (406)
T KOG1479|consen 285 LLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL 363 (406)
T ss_pred HHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence 345555 8888888866666665554 4443333222 111111111 23456677888899999999999889
Q ss_pred ccccccccCCcccchhhhhHHHHHHHHHHHHHHHhh
Q 011277 162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG 197 (489)
Q Consensus 162 ~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~ 197 (489)
...+..+..|++++-.+..+.......|...|.+++
T Consensus 364 ~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 364 IMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred eehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999988888775
No 286
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=86.02 E-value=0.19 Score=47.79 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHhhHhhhhh-chhhHHHHH--hHHHHHHHHHHHh----------hcchHHHHHHHHHHHhhhccccc
Q 011277 93 VVSMCLGGAFIGSTLSGWIADG-VGRRRAFQL--CALPMIIGASISA----------TTRNLIGMLLGRFVVGTGMGLGP 159 (489)
Q Consensus 93 ~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~--~~~~~~i~~~l~~----------~~~~~~~l~~~R~l~G~g~g~~~ 159 (489)
....|.+|-.+|-.+.++.-=+ -.+|.++.. .-+++.-.-++|. ..+|-+..++.-++.|+..|-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4556788888888877653211 135554443 2223322222331 23344566777889999999999
Q ss_pred ccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 011277 160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP 199 (489)
Q Consensus 160 ~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~ 199 (489)
.....+..+..++++|..+..+...+..+|...|.+++..
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp HHHH------------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888888898888877643
No 287
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.39 E-value=18 Score=38.27 Aligned_cols=155 Identities=17% Similarity=0.080 Sum_probs=90.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhc---------------cCC---------
Q 011277 322 SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS---------------YIP--------- 377 (489)
Q Consensus 322 ~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~---------------~~~--------- 377 (489)
.+|+.....-+++.+..++..+...|..|.+.+.+|.+.++++.++..+.... ..+
T Consensus 133 ~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~ 212 (735)
T KOG3626|consen 133 QSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCC 212 (735)
T ss_pred cceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhc
Confidence 35665556667777777777888889888888888888888888776543100 000
Q ss_pred ------------Cc----hhhHHHHHHHHHHHHHHhcCccc---cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 011277 378 ------------GS----ASLYLSVGGMLMFVLTFALGAGP---VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL 438 (489)
Q Consensus 378 ------------~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 438 (489)
.. .........+++-.+..++|..| +-..|+-|...+++-..-.|+..++..+|.+++-++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfll 292 (735)
T KOG3626|consen 213 NKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLL 292 (735)
T ss_pred cCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHH
Confidence 00 00000111112222334455444 445688899999999999999888877766655544
Q ss_pred HHHHHH---Hh---------------C-CchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011277 439 FLRLLE---QL---------------G-PQLLYSIFGTFCLMAVAFVKRNVVETKGKS 477 (489)
Q Consensus 439 ~~~l~~---~~---------------g-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 477 (489)
.+.+.. .+ | |+..|.+.+.+.++..+.+ ++.|+++.++
T Consensus 293 gS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~-f~fPk~lp~~ 349 (735)
T KOG3626|consen 293 GSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL-FFFPKELPKS 349 (735)
T ss_pred HHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-HhCcccCccc
Confidence 433321 11 1 2345666666666665544 4555555443
No 288
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=82.26 E-value=9.3 Score=36.07 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=54.0
Q ss_pred HHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCC
Q 011277 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171 (489)
Q Consensus 100 g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~ 171 (489)
..+..+++.+.+..++|-|.++.++...+... +..=.=+.+..++-.-...|+|.+.....--.|+++.-.
T Consensus 70 ~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 70 SLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 33466777779999999999998877766542 222244677888899999999999998888888877664
No 289
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=79.74 E-value=66 Score=31.77 Aligned_cols=91 Identities=16% Similarity=0.098 Sum_probs=51.1
Q ss_pred HHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhh
Q 011277 340 VAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAK 419 (489)
Q Consensus 340 ~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 419 (489)
....+.|.++-|++++.+.+...+...++....+. ... -..-+.++...+ .....+.|+--..|+++-.+
T Consensus 60 ~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv-------~~m-q~~q~~yg~~~a--~evay~sYiys~v~~~~yq~ 129 (412)
T PF01770_consen 60 PVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSV-------LAM-QLMQFFYGLATA--AEVAYYSYIYSVVDKEHYQK 129 (412)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcH-------HHH-HHHHHHHHHHHH--HHHHHHHHheeecCHHHHHH
Confidence 44577899999999888766555554444332211 111 111122222211 22233345555568888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011277 420 AMAVCMSVHWVINFFVGLLFL 440 (489)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~ 440 (489)
+.+.+.+...+|.+++..+.-
T Consensus 130 vts~~raa~l~g~~~s~~lgQ 150 (412)
T PF01770_consen 130 VTSYTRAATLVGRFISSLLGQ 150 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777666665543
No 290
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=78.63 E-value=4.4 Score=37.78 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc
Q 011277 124 CALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201 (489)
Q Consensus 124 ~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~ 201 (489)
-.+++.+...+.-+.++++..++.-+..|+-.|..+....--+.+-.++++|-.+++....+-+.|..++..++.++.
T Consensus 325 vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh 402 (409)
T KOG3880|consen 325 VNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH 402 (409)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence 344555566667788999999999999999888888877777777788889999999999999999988888887653
No 291
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=78.59 E-value=1.4 Score=43.36 Aligned_cols=67 Identities=18% Similarity=0.108 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccc
Q 011277 90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLG 158 (489)
Q Consensus 90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~ 158 (489)
+|+.......| +-++..-++.||+|-|+.+..+...+.++..+.+...+..+...-|-..|+-.+..
T Consensus 336 ~GL~ins~~lg--i~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~ 402 (498)
T KOG0637|consen 336 LGLMLNSIVLG--IYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPL 402 (498)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecch
Confidence 34444444444 88899999999999888887888878999888888888888887777777444433
No 292
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=74.71 E-value=1.1e+02 Score=31.81 Aligned_cols=133 Identities=13% Similarity=0.083 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhhhc-CCchhHHHhhHHHHHHHHHHHHHhh---ccCC-----------Cc-hhhHHHHHHHHHHHH-
Q 011277 332 IANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASS---SYIP-----------GS-ASLYLSVGGMLMFVL- 394 (489)
Q Consensus 332 i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~---~~~~-----------~~-~~~~~~~~~~~~~~~- 394 (489)
-......+++++++|-+ ||-+++.++.++..++..++-.... ...+ .. ......+....++..
T Consensus 84 G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia 163 (571)
T KOG1237|consen 84 GTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIA 163 (571)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHhe
Confidence 34445667889999975 8878877776666655443322211 1110 00 111111111111111
Q ss_pred HHhcCccccccccccccCCc----hhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHH
Q 011277 395 TFALGAGPVPSLLLPEIFPS----RIRA--KAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA 464 (489)
Q Consensus 395 ~~~~~~~~~~~~~~~e~~p~----~~r~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 464 (489)
....|.-|....+-+|-++. +.+. .-..+...-.+++..++-.+..+..+..+|.+.|.+..++..++.+
T Consensus 164 ~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~ 239 (571)
T KOG1237|consen 164 LGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAIL 239 (571)
T ss_pred eccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHH
Confidence 11222335666677888872 2223 4555555556666666665555666778888878777776655543
No 293
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=67.54 E-value=1.8 Score=44.57 Aligned_cols=116 Identities=12% Similarity=0.035 Sum_probs=1.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCC---C------------------
Q 011277 320 GLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP---G------------------ 378 (489)
Q Consensus 320 ~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~---~------------------ 378 (489)
....|+.....-++.++..++..++.+|-.|.+.+.++.++++++.++.........+ .
T Consensus 37 S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~ 116 (539)
T PF03137_consen 37 SSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDS 116 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccc
Confidence 3345666777778888888877888888777777778888888877765432210000 0
Q ss_pred -----------------chhhHHHHHHHHHHHHHHhcCcc---ccccccccccCCchhhhhHHHHHHHHHHHHHHHH
Q 011277 379 -----------------SASLYLSVGGMLMFVLTFALGAG---PVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFV 435 (489)
Q Consensus 379 -----------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~ 435 (489)
..........+++-.+..++|.. ++-..|+-|..+++..+.-.|+..++..+|..++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~G 193 (539)
T PF03137_consen 117 SSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALG 193 (539)
T ss_dssp -----------------------------------SSS---------------------------------------
T ss_pred cccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHH
Confidence 00001011111122223344443 4455789999999999999998888776665543
No 294
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=62.83 E-value=1e+02 Score=30.22 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=13.4
Q ss_pred HHHHHHhh-----hcCCchhHHH
Q 011277 339 VVAMVLMD-----KLGRKALLQW 356 (489)
Q Consensus 339 ~~~g~l~d-----r~grr~~~~~ 356 (489)
++..++.| |+|||+..+.
T Consensus 81 llWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 81 LLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred HHHHhhhHHHHHHhhccccceee
Confidence 45667788 9999986654
No 295
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=60.27 E-value=93 Score=27.38 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhHhhh---hhchhhHHHHHhHHH
Q 011277 94 VSMCLGGAFIGSTLSGWIA---DGVGRRRAFQLCALP 127 (489)
Q Consensus 94 ~s~~~~g~~ig~~~~g~l~---Dr~GRr~~~~~~~~~ 127 (489)
......++.+|..+.+.+. ++..+|+.....+.+
T Consensus 52 ~~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~ 88 (209)
T PF06912_consen 52 YLLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLL 88 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 3344556667777777772 333344444444433
No 296
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=57.65 E-value=68 Score=29.67 Aligned_cols=31 Identities=26% Similarity=0.131 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcCCchhH
Q 011277 324 GLANVFVGIANLLGSVVAMVLMDKLGRKALL 354 (489)
Q Consensus 324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~ 354 (489)
+..++......++...+.|-+.||.|||+.-
T Consensus 75 gqLfiaGfgSsmLFGtivgSLaDkqGRKrac 105 (454)
T KOG4332|consen 75 GQLFIAGFGSSMLFGTIVGSLADKQGRKRAC 105 (454)
T ss_pred ceeeecccchHHHHHHHHHHHHhhhccccce
Confidence 3333333333344445667899999999854
No 297
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.90 E-value=1.1e+02 Score=30.40 Aligned_cols=20 Identities=5% Similarity=-0.049 Sum_probs=10.0
Q ss_pred HHhhhccchhHHHHHHHHHH
Q 011277 279 EELLYGRHFRVVFIGSTLFA 298 (489)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~ 298 (489)
.+.|+.+..+.++.+..-..
T Consensus 283 gDVFR~p~~~~Lfsa~lGsG 302 (593)
T KOG1277|consen 283 GDVFRFPSHPLLFSAVLGSG 302 (593)
T ss_pred cccccCCCccHHHHHHhccc
Confidence 35566555555554443333
No 298
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=53.62 E-value=26 Score=28.42 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=19.0
Q ss_pred ccccCCchhhhhHHHHHHHHHHHH
Q 011277 408 LPEIFPSRIRAKAMAVCMSVHWVI 431 (489)
Q Consensus 408 ~~e~~p~~~r~~~~~~~~~~~~~~ 431 (489)
+.|++|++.|....+..+...+..
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~~~ 83 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSSAV 83 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHH
Confidence 569999999999988877665543
No 299
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=53.44 E-value=2.6e+02 Score=28.50 Aligned_cols=42 Identities=12% Similarity=-0.115 Sum_probs=36.5
Q ss_pred cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277 403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~ 444 (489)
+.|.+++|+++.+...+-.++....++++..+++.+...+.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999998887665544
No 300
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=50.40 E-value=1.4e+02 Score=28.79 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=59.3
Q ss_pred hhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH-----Hhhc----chHHHHH
Q 011277 75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI-----SATT----RNLIGML 145 (489)
Q Consensus 75 ~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l-----~~~~----~~~~~l~ 145 (489)
.++...+. +....+++++.+.|....++|+...-++.|.--.-+-...-.++-.++.+- ..++ ++-+.+.
T Consensus 31 ~tLatyLl-G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly 109 (508)
T COG4262 31 GTLATYLL-GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLY 109 (508)
T ss_pred HHHHHHhc-CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHH
Confidence 33444443 334567789999999999999999999888654433333333333222211 1222 3556777
Q ss_pred HHHHHHhhhcccccccccccccc
Q 011277 146 LGRFVVGTGMGLGPTVAALYVTE 168 (489)
Q Consensus 146 ~~R~l~G~g~g~~~~~~~~~i~e 168 (489)
++-++.|.=.|...|....++..
T Consensus 110 ~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 110 ALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHHHHHHHHhcchHHHHHHHHH
Confidence 88899999899988887666543
No 301
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=49.08 E-value=61 Score=29.68 Aligned_cols=99 Identities=12% Similarity=0.092 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhhHhhhhh-chhhHHHH----HhHHHHHHHHHHHh-hc----chHHHHHHHHHHHhhhcccccccc
Q 011277 93 VVSMCLGGAFIGSTLSGWIADG-VGRRRAFQ----LCALPMIIGASISA-TT----RNLIGMLLGRFVVGTGMGLGPTVA 162 (489)
Q Consensus 93 ~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~----~~~~~~~i~~~l~~-~~----~~~~~l~~~R~l~G~g~g~~~~~~ 162 (489)
..-.+..|+.+|....|+.... +-||+-+. .+++.+.+..+... .. .++..+.+.-++.|+..=+..++.
T Consensus 146 ~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~Vi 225 (267)
T PF07672_consen 146 FQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVI 225 (267)
T ss_pred HHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3445777888999999999885 54555443 22223333332221 11 134556777778886642333222
Q ss_pred cccccccCCcccchhhhhHHHHHHHHHHHH
Q 011277 163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMG 192 (489)
Q Consensus 163 ~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~ 192 (489)
.++-+-++...+.+..-.++..+.+|.++
T Consensus 226 -L~lPhEyK~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 226 -LNLPHEYKGYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred -hcChhhhcCCCcceehhHHHHHHHHHHHH
Confidence 23333334444555666666777777543
No 302
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=46.29 E-value=1.8e+02 Score=29.92 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=13.4
Q ss_pred HHHhhhccchhHHHHHHHHHHHHhh
Q 011277 278 FEELLYGRHFRVVFIGSTLFALQQL 302 (489)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (489)
-.++|+.+....++...+-..+|.+
T Consensus 251 hgDVFR~P~~~~lls~lvG~G~Qll 275 (521)
T PF02990_consen 251 HGDVFRPPKHPMLLSALVGTGIQLL 275 (521)
T ss_pred hHHHhcCcCCchHHHhHhcchhhhh
Confidence 3567776665555544444444433
No 303
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=45.82 E-value=41 Score=27.39 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=18.2
Q ss_pred ccccCCchhhhhHHHHHHHHHHH
Q 011277 408 LPEIFPSRIRAKAMAVCMSVHWV 430 (489)
Q Consensus 408 ~~e~~p~~~r~~~~~~~~~~~~~ 430 (489)
+.|++|+..|.......+...+.
T Consensus 58 LkDm~Pp~~R~~i~~~~s~t~s~ 80 (145)
T TIGR00986 58 LKDIVPPTTRGWIYHKYSTTTNF 80 (145)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHH
Confidence 56999999999988887765444
No 304
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=44.15 E-value=70 Score=27.57 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhHhhhhhchhhH
Q 011277 95 SMCLGGAFIGSTLSGWIADGVGRRR 119 (489)
Q Consensus 95 s~~~~g~~ig~~~~g~l~Dr~GRr~ 119 (489)
..|.+|+.+++.+.|+++||.-+|+
T Consensus 89 gGyL~gfi~aa~l~G~l~~k~~~~~ 113 (184)
T COG1268 89 GGYLIGFIIAAFLIGLLAEKIRKRN 113 (184)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccc
Confidence 3588899999999999999998633
No 305
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=43.41 E-value=1.1e+02 Score=23.47 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhhcCCchhHHHhhHHHHH
Q 011277 332 IANLLGSVVAMVLMDKLGRKALLQWSFFSMAV 363 (489)
Q Consensus 332 i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i 363 (489)
+..++|..++-|+-.+++-++...+.+++.++
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv 85 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGV 85 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 33455566666666667776654444444443
No 306
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=41.17 E-value=90 Score=22.24 Aligned_cols=31 Identities=23% Similarity=0.143 Sum_probs=23.8
Q ss_pred hhhhchhhHHHHHhHHHHHHHHHHHhhcchH
Q 011277 111 IADGVGRRRAFQLCALPMIIGASISATTRNL 141 (489)
Q Consensus 111 l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~ 141 (489)
--|+-.|++-|.+.+.+-..+-++++.....
T Consensus 10 ~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~~~ 40 (73)
T PF11298_consen 10 SQDQRRRRRRYLIMMGIRIPCFVLAAVVYRL 40 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4577889999998888887777777766654
No 307
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=40.54 E-value=1.4e+02 Score=24.78 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHH
Q 011277 139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM 191 (489)
Q Consensus 139 ~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~ 191 (489)
+++..++..-.+.|+|. ..+.+.+++-.+++++-|...++-..-.+++-+
T Consensus 95 P~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSllG~~e~~~N~~r~ 144 (153)
T PF11947_consen 95 PPWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSLLGWEEFKRNWGRM 144 (153)
T ss_pred CchHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCcccHHHHHHhHHHH
Confidence 34444554444444443 234556678888999899888887776666644
No 308
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.82 E-value=1.1e+02 Score=23.49 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhhc-CCchhHHHhhHH
Q 011277 335 LLGSVVAMVLMDKL-GRKALLQWSFFS 360 (489)
Q Consensus 335 ~~g~~~~g~l~dr~-grr~~~~~~~~~ 360 (489)
++|. .-||+.||+ |.++.-++.+++
T Consensus 57 lVGa-~iG~llD~~agTsPwglIv~ll 82 (116)
T COG5336 57 LVGA-GIGWLLDKFAGTSPWGLIVFLL 82 (116)
T ss_pred HHHH-HHHHHHHHhcCCCcHHHHHHHH
Confidence 3444 347888986 566654444433
No 309
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.48 E-value=1.9e+02 Score=22.32 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=29.3
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011277 413 PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL 446 (489)
Q Consensus 413 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 446 (489)
.++.++.++++-.+.-.+.+.+.+..++++++.+
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577889999999999999999999999998875
No 310
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=34.58 E-value=1.2e+02 Score=25.19 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhHhhhhhchhhHH
Q 011277 96 MCLGGAFIGSTLSGWIADGVGRRRA 120 (489)
Q Consensus 96 ~~~~g~~ig~~~~g~l~Dr~GRr~~ 120 (489)
.|.+|+.+.+.+.|++.+|..|++.
T Consensus 61 Gyl~gf~~~a~i~g~~~~~~~~~~~ 85 (148)
T PF02632_consen 61 GYLLGFPLAALIIGLLAERLKRSRS 85 (148)
T ss_pred hHHHHHHHHHHHHHHHHHhccccch
Confidence 5888999999999999999988643
No 311
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=33.65 E-value=1e+02 Score=29.19 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=40.4
Q ss_pred HHHHhhHhhhhh--chhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccc
Q 011277 103 IGSTLSGWIADG--VGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAAL 164 (489)
Q Consensus 103 ig~~~~g~l~Dr--~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~ 164 (489)
+-.+......|| ||.|-.+ ..++.+.+-++.+++++.+.-+.+-.+..++.|.....-..
T Consensus 77 ~iKl~~Pff~~rfpf~~Ri~~--~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~ 138 (409)
T KOG3880|consen 77 AIKLTAPFFIHRFPFGFRIAL--VVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLA 138 (409)
T ss_pred HHHHhchhhhhhcccchHHHH--HHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhh
Confidence 445556666776 5666543 34555666677888999998888888888887766644433
No 312
>COG3619 Predicted membrane protein [Function unknown]
Probab=32.82 E-value=3.7e+02 Score=24.15 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhHhhhhhchh
Q 011277 87 TLAEGLVVSMCLGGAFIGSTLSGWIADGVGR 117 (489)
Q Consensus 87 ~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GR 117 (489)
+...........+.+.+|......+..|..|
T Consensus 54 ~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~ 84 (226)
T COG3619 54 DAALAVLLLLPILAFVLGVAAAELISRRATR 84 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444566666777777886666666666665
No 313
>PRK14229 camphor resistance protein CrcB; Provisional
Probab=29.93 E-value=1.7e+02 Score=22.67 Aligned_cols=26 Identities=19% Similarity=0.089 Sum_probs=16.4
Q ss_pred HHHHHhhhcccccccccccccccCCc
Q 011277 147 GRFVVGTGMGLGPTVAALYVTEVSPP 172 (489)
Q Consensus 147 ~R~l~G~g~g~~~~~~~~~i~e~~~~ 172 (489)
.|.+.+.|.-+.++.-+++..|...-
T Consensus 55 ~~~~l~tGf~GgfTTFSTf~~e~~~l 80 (108)
T PRK14229 55 VYAILATGFCGGLTTFSTLNDELQRL 80 (108)
T ss_pred HHHHHHhhHccccccHHHHHHHHHHH
Confidence 34455555555666777777777754
No 314
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=26.26 E-value=5.1e+02 Score=23.77 Aligned_cols=29 Identities=10% Similarity=0.041 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhhcCCchhHHHhhHH
Q 011277 332 IANLLGSVVAMVLMDKLGRKALLQWSFFS 360 (489)
Q Consensus 332 i~~~~g~~~~g~l~dr~grr~~~~~~~~~ 360 (489)
++..++.+-+-.++.|+.-|++.+++.++
T Consensus 251 lCT~lAVigGk~lAskIS~rtVt~~ggi~ 279 (294)
T KOG2881|consen 251 LCTGLAVIGGKYLASKISVRTVTLIGGIL 279 (294)
T ss_pred HHHHHHHhhhHHHhhhheeEEEEEecchh
Confidence 33444444445678888888766555443
No 315
>COG4769 Predicted membrane protein [Function unknown]
Probab=23.82 E-value=90 Score=26.14 Aligned_cols=46 Identities=28% Similarity=0.204 Sum_probs=33.7
Q ss_pred HHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 011277 102 FIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGT 153 (489)
Q Consensus 102 ~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~ 153 (489)
++.+...-++..++|.|.+-.++. +...++.+|..++.++|++.|-
T Consensus 87 ~i~S~L~m~~l~~f~~k~~S~lgi------S~mGaF~hNl~QLivas~Lv~~ 132 (181)
T COG4769 87 AILSTLFMYFLYQFGPKYLSLLGI------SVMGAFTHNLGQLIVASFLVFT 132 (181)
T ss_pred HHHHHHHHHHHHHcCCceEeeeeh------hhHHHHHHhHHHHHHHHHHHhc
Confidence 455666777888999887644433 2345678899999999999874
No 316
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=23.23 E-value=4.2e+02 Score=22.10 Aligned_cols=28 Identities=4% Similarity=-0.216 Sum_probs=18.4
Q ss_pred cccccccCCchhhhhHHHHHHHHHHHHH
Q 011277 405 SLLLPEIFPSRIRAKAMAVCMSVHWVIN 432 (489)
Q Consensus 405 ~~~~~e~~p~~~r~~~~~~~~~~~~~~~ 432 (489)
|...+-.-.++.-|+..|+-.+-.+++-
T Consensus 116 YGilSaSWD~~r~GSllG~~e~~~N~~r 143 (153)
T PF11947_consen 116 YGILSASWDPEREGSLLGWEEFKRNWGR 143 (153)
T ss_pred hhhcccccCCCCCCCcccHHHHHHhHHH
Confidence 3345555577778888888777666543
No 317
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=22.94 E-value=2.5e+02 Score=19.53 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhcccCCCC
Q 011277 458 FCLMAVAFVKRNVVETKGK 476 (489)
Q Consensus 458 ~~~~~~~~~~~~~~et~~~ 476 (489)
+.+.++-++-..+||..+.
T Consensus 40 ~~l~~~~~iG~~LPe~s~~ 58 (67)
T PF11511_consen 40 FLLVALYFIGLLLPERSRQ 58 (67)
T ss_dssp HHHHHHHHHHHSSTTTCSS
T ss_pred HHHHHHHHHHHhCchhccc
Confidence 3344444555678987654
No 318
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.42 E-value=3.7e+02 Score=20.60 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=13.5
Q ss_pred HHHhhHhhhhhchhhHHHHHhHHHHHH
Q 011277 104 GSTLSGWIADGVGRRRAFQLCALPMII 130 (489)
Q Consensus 104 g~~~~g~l~Dr~GRr~~~~~~~~~~~i 130 (489)
|..++-+|=.+||-++.+.+..++.++
T Consensus 59 G~~lG~WLD~~~~t~~~~tl~~lllGv 85 (100)
T TIGR02230 59 GVAVGIWLDRHYPSPFSWTLTMLIVGV 85 (100)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 333344444467776655554444433
No 319
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.28 E-value=7.9e+02 Score=28.59 Aligned_cols=17 Identities=24% Similarity=0.301 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhhcC
Q 011277 333 ANLLGSVVAMVLMDKLG 349 (489)
Q Consensus 333 ~~~~g~~~~g~l~dr~g 349 (489)
++.+|..++..+..-+|
T Consensus 64 ~GiVGA~LAD~L~~LFG 80 (1355)
T PRK10263 64 GGMPGAWLADTLFFIFG 80 (1355)
T ss_pred cchHHHHHHHHHHHHHh
Confidence 33444444444444444
No 320
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=20.26 E-value=4.3e+02 Score=20.69 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=26.7
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhH
Q 011277 319 AGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF 359 (489)
Q Consensus 319 ~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~ 359 (489)
.+.+.........+...++.+++|..+-|..++|=+..+..
T Consensus 32 ~~~~e~~~~~~~~~i~~ls~~~GG~~a~~~~~~kG~l~G~~ 72 (116)
T PF12670_consen 32 TSLSESILPWLVVIIYILSVFIGGFYAGRKAGSKGWLHGLL 72 (116)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 44555566666667778888888888777655554545543
Done!