Query 011277
Match_columns 489
No_of_seqs 243 out of 2794
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 04:49:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.7E-51 5.9E-56 417.7 38.9 433 48-488 9-481 (491)
2 3o7q_A L-fucose-proton symport 100.0 6.6E-33 2.3E-37 276.7 28.6 366 52-465 27-428 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 6.2E-34 2.1E-38 285.2 16.2 392 50-467 27-431 (451)
4 4aps_A DI-OR tripeptide H+ sym 100.0 3.4E-29 1.2E-33 253.7 25.4 390 81-477 49-479 (491)
5 2gfp_A EMRD, multidrug resista 100.0 7.2E-30 2.5E-34 249.4 6.9 356 54-453 3-360 (375)
6 2cfq_A Lactose permease; trans 99.9 1.5E-26 5E-31 229.3 6.5 374 68-478 24-408 (417)
7 2xut_A Proton/peptide symporte 99.9 6.9E-25 2.3E-29 223.9 13.4 151 72-225 33-195 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.2 9.9E-11 3.4E-15 116.4 14.5 166 57-225 258-430 (451)
9 4gc0_A D-xylose-proton symport 99.1 5.4E-11 1.8E-15 119.8 7.5 157 71-231 297-466 (491)
10 3o7q_A L-fucose-proton symport 99.0 5.4E-10 1.8E-14 110.6 9.4 141 71-216 278-420 (438)
11 2cfq_A Lactose permease; trans 99.0 4.4E-10 1.5E-14 110.7 7.4 141 90-231 261-403 (417)
12 4aps_A DI-OR tripeptide H+ sym 98.9 7.6E-09 2.6E-13 104.0 13.3 139 319-466 49-193 (491)
13 2xut_A Proton/peptide symporte 98.9 1.8E-08 6.1E-13 102.2 15.6 136 323-466 56-195 (524)
14 2gfp_A EMRD, multidrug resista 98.9 3.6E-09 1.2E-13 102.4 8.3 155 313-476 24-181 (375)
15 2g9p_A Antimicrobial peptide l 51.0 6.1 0.00021 19.7 1.0 14 107-120 2-15 (26)
16 2dw3_A Intrinsic membrane prot 27.6 1.2E+02 0.004 20.7 4.6 31 447-477 31-61 (77)
17 4dve_A Biotin transporter BIOY 26.8 80 0.0027 26.4 4.7 24 95-118 100-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.7e-51 Score=417.71 Aligned_cols=433 Identities=30% Similarity=0.498 Sum_probs=335.4
Q ss_pred hHHHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCC------chhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHH
Q 011277 48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF 121 (489)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~ 121 (489)
..+...++++++.+++|||.++++.++|.+.++++.+. ++.+.+++.+.+.+|..+|++++|+++||+|||+++
T Consensus 9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l 88 (491)
T 4gc0_A 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 33445566788999999999999999999988875422 234468999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHh------------------hcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHH
Q 011277 122 QLCALPMIIGASISA------------------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ 183 (489)
Q Consensus 122 ~~~~~~~~i~~~l~~------------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~ 183 (489)
.++.+++.+++++++ .++|++.++++|+++|+|.|+..+..+.+++|++|+++|++..++.+
T Consensus 89 ~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~ 168 (491)
T 4gc0_A 89 KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQ 168 (491)
T ss_dssp HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhh
Confidence 999999999999998 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccC-------CchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCc
Q 011277 184 IATCLGLMGSLLIGIPVKEI-------AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSH 256 (489)
Q Consensus 184 ~~~~~G~~~g~~~~~~l~~~-------~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~ 256 (489)
.+..+|.+.+...+...... ..|||+.+....++.++..+..++.||||+|+..+++.+++++.+++..+++.
T Consensus 169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~ 248 (491)
T 4gc0_A 169 FAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL 248 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch
Confidence 99999988888776543221 23589999888888888888889999999999999999999888877654322
Q ss_pred hhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHHHH
Q 011277 257 VKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIA 333 (489)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~ 333 (489)
..+...+.....+.+ .+....... ...+..........++++.+.+.+.+|.+..++..+.+.. ......++.
T Consensus 249 ~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (491)
T 4gc0_A 249 ATQAVQEIKHSLDHG-RKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVI 324 (491)
T ss_dssp HHHHHHHHHHHHHHH-HHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhh-hhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHH
Confidence 222111111100000 000011111 2223344444555566677777788888888877766543 345667788
Q ss_pred HHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCC
Q 011277 334 NLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP 413 (489)
Q Consensus 334 ~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 413 (489)
.++++++++++.||+|||+.+..+...+.++++.+....... . .....+..++++...++.+.+|+.+.+.+|++|
T Consensus 325 ~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fP 400 (491)
T 4gc0_A 325 NLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--A--PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP 400 (491)
T ss_dssp HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT--C--CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc--c--chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC
Confidence 899999999999999999999888777777666554332221 1 122333445566677888889999999999999
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhhcC
Q 011277 414 SRIRAKAMAVCMSVHWVINFFVGLLFLRLLE------QLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLP 487 (489)
Q Consensus 414 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e~~~~~~~ 487 (489)
++.|++++|++..++++++++.+.+++.+.+ ..+....|.+++++++++.++.++++||||||++||||+.|++
T Consensus 401 t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~ 480 (491)
T 4gc0_A 401 NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP 480 (491)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence 9999999999999999999999988765533 3466678889999999999999999999999999999999976
Q ss_pred C
Q 011277 488 Q 488 (489)
Q Consensus 488 ~ 488 (489)
+
T Consensus 481 ~ 481 (491)
T 4gc0_A 481 E 481 (491)
T ss_dssp -
T ss_pred C
Confidence 4
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=6.6e-33 Score=276.72 Aligned_cols=366 Identities=13% Similarity=0.091 Sum_probs=262.8
Q ss_pred HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277 52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG 131 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~ 131 (489)
....+++..+..+++.+..++.+|.+.+++|.+.+ +.+++.+.+.+++.++++++|+++||+|||+++..+.++++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 104 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNF--QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSH--HHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34555666677788878888889999999998754 5689999999999999999999999999999999999999999
Q ss_pred HHHH---hhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc-cCCch-
Q 011277 132 ASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EIAGW- 206 (489)
Q Consensus 132 ~~l~---~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~-~~~~~- 206 (489)
.+++ +.+++++.++++|+++|++.|...+....+++|++|+++|+++.++++.+..+|..++++++..+. +..+.
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~ 184 (438)
T 3o7q_A 105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQ 184 (438)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCC
T ss_pred HHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999 889999999999999999999999999999999999999999999999999999999999988776 55554
Q ss_pred -----------------------hHHHHHHHHHHHHHHHHHhh--hccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHH
Q 011277 207 -----------------------WRICFWVSIVPAAILCLAMV--FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL 261 (489)
Q Consensus 207 -----------------------wr~~f~~~~i~~~~~~~~~~--~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (489)
||+.|++.....++..+..+ ..||+++. + +.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~-~~-------------------- 240 (438)
T 3o7q_A 185 SQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---N-HS-------------------- 240 (438)
T ss_dssp CHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---C-CC--------------------
T ss_pred cccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---c-cc--------------------
Confidence 79999765544444433333 24555320 0 00
Q ss_pred HHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHH-HHhc-CCCc---chHHHHHHHHHHH
Q 011277 262 AELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV-FKSA-GLSS---GLANVFVGIANLL 336 (489)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~i~~~~ 336 (489)
++++.....++++.++++.++......++...... ....+.+.. .++. +.+. +.......++..+
T Consensus 241 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 310 (438)
T 3o7q_A 241 ------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT----ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFI 310 (438)
T ss_dssp ------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------cccccchhhhHHHHHhChHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHH
Confidence 00111112345566666666665554443332222 222333333 3333 5543 4556667788899
Q ss_pred HHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchh
Q 011277 337 GSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI 416 (489)
Q Consensus 337 g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 416 (489)
+.++.++++||+|||+.+..+.+...++.++..... .. .. +....+..++.+ ...|....+..|.+|++
T Consensus 311 ~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~--~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~- 379 (438)
T 3o7q_A 311 GRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG------GH-VG--LIALTLCSAFMS-IQYPTIFSLGIKNLGQD- 379 (438)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC------HH-HH--HHHHHHHHHHHT-THHHHHHHHHHSSCGGG-
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC------Cc-HH--HHHHHHHHHHHH-HHHHHHHHHHHhhcccc-
Confidence 999999999999999988877766655544433211 11 11 111222222222 23456667778999966
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHHH
Q 011277 417 RAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAF 465 (489)
Q Consensus 417 r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~ 465 (489)
|+++.++.. .+++++.++|.+.+.+.+..| +...|.+.+++.++..++
T Consensus 380 ~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 380 TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 899998877 778999999999999999988 877877665555444443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=6.2e-34 Score=285.20 Aligned_cols=392 Identities=12% Similarity=0.070 Sum_probs=269.0
Q ss_pred HHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHH
Q 011277 50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI 129 (489)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~ 129 (489)
++.....+++.+..+++.....+.+|.+.+|+ .+.+ +.+++.+.+.++..++++++|+++||+|||+++..+.++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~--~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRG--DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSS--CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHh--HHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 34456667777888888888888999999998 6654 46899999999999999999999999999999999999999
Q ss_pred HHHHHHhh----cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc
Q 011277 130 IGASISAT----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205 (489)
Q Consensus 130 i~~~l~~~----~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~ 205 (489)
++.+++++ ++|++.++++|+++|++.|...+....++.|++|+++|+++.++...+..+|..+++.++..+.+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 99999999999999999999999999999999999999999999999999999999988876555454
Q ss_pred hhHHHHHHHHHHHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhc
Q 011277 206 WWRICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG 284 (489)
Q Consensus 206 ~wr~~f~~~~i~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (489)
.||+.|++.++..++. ++..+++||+|+....+++.+. + . ..+...++ +.++....+....++.+++
T Consensus 184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 251 (451)
T 1pw4_A 184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-K--------N-DYPDDYNE--KAEQELTAKQIFMQYVLPN 251 (451)
T ss_dssp CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-C--------C-C---------------CCTHHHHHHTSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-c--------c-cccccchh--hhhcccccccchHHHHHcC
Confidence 2599988866555544 3445678898764211111000 0 0 00000000 0000001111113445555
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cCCCc---chHHHHHHHHHHHHHHHHHHHhhhc--CCchhHHHhh
Q 011277 285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLSS---GLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSF 358 (489)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~ 358 (489)
+.++......++.... ......+.+..+++ .+.+. +.......++.+++.++.+++.||+ |||+.+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~ 327 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLL----RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF 327 (451)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 5555444333332221 22233344444444 45543 4566677788999999999999999 9998876665
Q ss_pred HHHH-HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHH-HHHHHH
Q 011277 359 FSMA-VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVG 436 (489)
Q Consensus 359 ~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~ 436 (489)
.... ++..+.. ..+. ...+......++.+.+.. +..+....+..|.+|++.|+++.|+.+.+.++ +..+++
T Consensus 328 ~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~ 400 (451)
T 1pw4_A 328 MTLVTIATIVYW-----MNPA-GNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAS 400 (451)
T ss_dssp HHHHHHHHHHTT-----SCCT-TCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----Hhcc-cCHHHHHHHHHHHHHHHh-chHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4444 3222211 1111 112222222222222221 22344456889999999999999999999999 999999
Q ss_pred HHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277 437 LLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK 467 (489)
Q Consensus 437 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
.+.+.+.+..|+...|.+.+++++++.+...
T Consensus 401 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 401 AIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999998988888888888777766655443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=3.4e-29 Score=253.71 Aligned_cols=390 Identities=14% Similarity=0.111 Sum_probs=232.3
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh-chhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccc
Q 011277 81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159 (489)
Q Consensus 81 ~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~ 159 (489)
+|.+ ..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++++++.+++++++|++.++++|+++|++.|...
T Consensus 49 ~~~s--~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 49 LHIT--RATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp CCSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 7775 4456899999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCccc--chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhh-ccCChH---
Q 011277 160 TVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF-CAESPH--- 233 (489)
Q Consensus 160 ~~~~~~i~e~~~~~~--Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~-~~Esp~--- 233 (489)
+....+++|++|+++ |+...++++.+..+|..+++.++..+.+..+ ||+.|++.++..++..+...+ .++..+
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY 205 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 999999999999999 7778888899999999999999888776666 699998865544443333322 121100
Q ss_pred -HHHhcCCHHHHHHHHHH----------------HhCCCchhHHHHH---------HHhhccCCCCcchhHHHhhhccch
Q 011277 234 -WLYKKGRTAEAEAEFEK----------------LLGGSHVKSSLAE---------LSKLDRGDDGDIVKFEELLYGRHF 287 (489)
Q Consensus 234 -~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 287 (489)
....+.+.++.++..++ ..+....++.... .....+..+... .....+++..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 283 (491)
T 4aps_A 206 LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVK--VTSTEHLRVV 283 (491)
T ss_dssp SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------------CT
T ss_pred cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhccc--ccHHHHHHHH
Confidence 00001122222222221 0000000000000 000000000000 0000111111
Q ss_pred --hHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHH-----HhhHH
Q 011277 288 --RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ-----WSFFS 360 (489)
Q Consensus 288 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~-----~~~~~ 360 (489)
........+............+.|....++......+.......++.+++.++.+++.||++||+... .+...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 11222222222222212222222322222222234566677778888888999999999999986543 44444
Q ss_pred HHHHHHHHHHHhhccC-CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 011277 361 MAVSMAIQVAASSSYI-PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF 439 (489)
Q Consensus 361 ~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~ 439 (489)
.+++..+......... ......+..+...++.+.+.. ...|....+..|.+|++.|++++|+.+...++++.+++.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~ 442 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM-LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV 442 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433322211100 011112222222233333322 23566677899999999999999999999999999999876
Q ss_pred HHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011277 440 LRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS 477 (489)
Q Consensus 440 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 477 (489)
+.+. ..+....|.+++.++++..+..+...|+++++.
T Consensus 443 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (491)
T 4aps_A 443 TLYN-AKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM 479 (491)
T ss_dssp GGGG-GSSTTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred HHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443 446667777888887777777666777776653
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=7.2e-30 Score=249.44 Aligned_cols=356 Identities=14% Similarity=0.108 Sum_probs=242.4
Q ss_pred HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277 54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~ 133 (489)
+.+++..+..+++.+...+.+|.+.+++|.+.+ +.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREG--AVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTH--HHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 345666677778888888899999999988654 568999999999999999999999999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV 213 (489)
Q Consensus 134 l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~ 213 (489)
+.+.++|++.+++.|+++|++.+...+....++.|++|+++|++..+++.....+|..+++.++..+.+..+ ||+.|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888776555 7999987
Q ss_pred HHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011277 214 SIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292 (489)
Q Consensus 214 ~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (489)
..+..++..+ ..+..||+++. ++++ +....++++.++++.++....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~---~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 206 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPV---DAPR------------------------------TRLLTSYKTLFGNSGFNCYLL 206 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTT---TCCC------------------------------CCTTTCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccCCC---Cccc------------------------------ccHHHHHHHHhcCcchHHHHH
Confidence 6655555444 34567887531 0000 001112334455555554443
Q ss_pred HHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHH-HHHHHHHHHHH
Q 011277 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS-MAVSMAIQVAA 371 (489)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~-~~i~~~~~~~~ 371 (489)
...+............+.+..+.++......+.......++.+++.++.+++.||++++. ..+... ...+.......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~ 284 (375)
T 2gfp_A 207 MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPD 284 (375)
T ss_dssp HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 333322221111111122223323322223455666677888888888899999887732 222221 11111110110
Q ss_pred hhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 011277 372 SSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLL 451 (489)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 451 (489)
.. .....+......++..++.+. ..|....+..|.+| +.|+++.|+.+...+++..++|.+.+.+.+..++...
T Consensus 285 ~~----~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 358 (375)
T 2gfp_A 285 WF----GVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLG 358 (375)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHH
T ss_pred hh----ccccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHH
Confidence 00 000112222222333333332 34666678899998 8999999999999999999998887777665554444
Q ss_pred hH
Q 011277 452 YS 453 (489)
Q Consensus 452 ~~ 453 (489)
+.
T Consensus 359 ~~ 360 (375)
T 2gfp_A 359 LL 360 (375)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.93 E-value=1.5e-26 Score=229.27 Aligned_cols=374 Identities=16% Similarity=0.081 Sum_probs=212.6
Q ss_pred eeeccchhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH---HHhhcchH-H
Q 011277 68 GVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS---ISATTRNL-I 142 (489)
Q Consensus 68 ~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~---l~~~~~~~-~ 142 (489)
+...+.+|.. .+++|.+.. +.|++.+.+.+++.++++++|+++||+|||+++..+..+++++.. ..+.+... .
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~--~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKS--DTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTT--TSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566664 456787654 458999999999999999999999999999999988877655321 11222221 1
Q ss_pred HHHHHHHHHhhhcccccccccccccccCCc--ccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI 220 (489)
Q Consensus 143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~--~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~ 220 (489)
.+..+|.+.|++.|...+.....+.++.++ ++|+...+.......+|..+++.++..+.+. + ||+.|++..+..++
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~-~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N-NQFVFWLGSGCALI 179 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C-SHHHHTTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c-hhHHHHHHHHHHHH
Confidence 234566776666555444444444444443 3456555666555666766777766655442 3 69999876555444
Q ss_pred HHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHH
Q 011277 221 LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300 (489)
Q Consensus 221 ~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (489)
..+..++.+|+|+. +.+.++. . .++.++......++.++++.++............
T Consensus 180 ~~~~~~~~~~~~~~---~~~~~~~---------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (417)
T 2cfq_A 180 LAVLLFFAKTDAPS---SATVANA---------V------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT 235 (417)
T ss_dssp HHHHSCSSCCCCSC---SSCSSSS---------S------------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccccc---ccccccc---------c------------ccccccccHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 44444444443210 0000000 0 0000011112334555555554433322221111
Q ss_pred hhhhHHHHHHhHHHHHHhcCC---CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCC
Q 011277 301 QLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP 377 (489)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 377 (489)
........+.|....++..+. ..+.......++..++.++.++++||+|||+++..+....++...... ..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~-----~~- 309 (417)
T 2cfq_A 236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-----FA- 309 (417)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-----TC-
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-----Hh-
Confidence 111111112222211110000 113344455567788899999999999999988776655554433221 11
Q ss_pred CchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCchhhHHHH
Q 011277 378 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVC-MSVHWVINFFVGLLFLRLLEQLGPQLLYSIFG 456 (489)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 456 (489)
..... + +....+....+.. ..+..+.+.+|.+|++.|+++.++. +..+++++.++|.+.+.+.+..|+...|.+++
T Consensus 310 ~~~~~-~-~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 310 TSALE-V-VILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp CSHHH-H-HHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred ccHHH-H-HHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 11111 1 1111111111111 1123356899999999999999995 77788999999999888888777777788888
Q ss_pred HHHHHHHHHHHhhcccCCCCCH
Q 011277 457 TFCLMAVAFVKRNVVETKGKSL 478 (489)
Q Consensus 457 ~~~~~~~~~~~~~~~et~~~~~ 478 (489)
++++++.+......||+|..++
T Consensus 387 ~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 387 LVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHHHHHHhhhcCCCchHH
Confidence 8888777776677888776654
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.92 E-value=6.9e-25 Score=223.94 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=128.1
Q ss_pred cchhh-hhhhcC------CCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc-hhhHHHHHhHHHHHHHHHHHhhcc-hHH
Q 011277 72 EPLES-ISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTR-NLI 142 (489)
Q Consensus 72 ~~~~~-i~~~~~------~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-GRr~~~~~~~~~~~i~~~l~~~~~-~~~ 142 (489)
+.++. +.+++| .+.+ +.+++.+.+.++..+++++.|+++||+ |||+++..+.++++++.++.++++ +++
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~--~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGA--VAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ 110 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTT--THHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHhccccccccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 34443 456777 6544 568999999999999999999999999 999999999999999999999998 999
Q ss_pred HHHHHHHHHhhhcccccccccccccccCCcccchhhhhH---HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHH
Q 011277 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF---IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219 (489)
Q Consensus 143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~---~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~ 219 (489)
.++++|+++|++.|...+....++.|++|+++|++..+. +..+..+|..+++.++..+.+..+ ||+.|++.++..+
T Consensus 111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~ 189 (524)
T 2xut_A 111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAVAFGIPGVLMF 189 (524)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887766 888889999999998887766666 6999988665555
Q ss_pred HHHHHh
Q 011277 220 ILCLAM 225 (489)
Q Consensus 220 ~~~~~~ 225 (489)
+..+..
T Consensus 190 ~~~~~~ 195 (524)
T 2xut_A 190 VATVFF 195 (524)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.22 E-value=9.9e-11 Score=116.36 Aligned_cols=166 Identities=17% Similarity=0.165 Sum_probs=126.6
Q ss_pred HHHHhhhhccceeeccchhhhhhh-cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc--hhhHHHHHhHHHHH-HHH
Q 011277 57 TLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMI-IGA 132 (489)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~--GRr~~~~~~~~~~~-i~~ 132 (489)
.+..++............|.+.++ +|.+ +.+.++..+...++..++.++.|+++||+ |||+.+..+..+.. ++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (451)
T 1pw4_A 258 AIANVFVYLLRYGILDWSPTYLKEVKHFA--LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBTTBSCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 333333333333345556666666 6765 44567888889999999999999999999 99999988877766 666
Q ss_pred HHHhhc--chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHH-HHHHHHHhhcccccCCchhHH
Q 011277 133 SISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAGWWRI 209 (489)
Q Consensus 133 ~l~~~~--~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~~wr~ 209 (489)
++.... .+.+.+.+.-++.|++.+...+....++.|.+|+++||++.++++....+ |..+++.+.+.+.+..+ |+.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~ 414 (451)
T 1pw4_A 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDG 414 (451)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHH
Confidence 666655 36777788889999988888888888999999999999999999999999 99999988877777666 588
Q ss_pred HHHHHHHHHHHHHHHh
Q 011277 210 CFWVSIVPAAILCLAM 225 (489)
Q Consensus 210 ~f~~~~i~~~~~~~~~ 225 (489)
.|++..+..++..+..
T Consensus 415 ~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 415 GFMVMIGGSILAVILL 430 (451)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877655444444433
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.13 E-value=5.4e-11 Score=119.80 Aligned_cols=157 Identities=17% Similarity=0.081 Sum_probs=97.7
Q ss_pred ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc-----chHHHHH
Q 011277 71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----RNLIGML 145 (489)
Q Consensus 71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~-----~~~~~l~ 145 (489)
....+.+.++.+.+... .........+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+.
T Consensus 297 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 374 (491)
T 4gc0_A 297 LYYAPEVFKTLGASTDI--ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 374 (491)
T ss_dssp HHHHHHHHHHSSCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HhcchHHHHhcCCCccc--hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence 33456677776654332 2344455566777899999999999999999998888877776654432 2222222
Q ss_pred H-HHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC------CchhHHHHHHHHHHH
Q 011277 146 L-GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI------AGWWRICFWVSIVPA 218 (489)
Q Consensus 146 ~-~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~------~~~wr~~f~~~~i~~ 218 (489)
. .-+..+++.+ ..++...+.+|.+|.+.|++..++......+|..+++.+...+.+. .+ +.+.|++.+...
T Consensus 375 ~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~-~~~~~~i~~~~~ 452 (491)
T 4gc0_A 375 SMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMG 452 (491)
T ss_dssp HHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 2 2222233322 3356678899999999999999998888777766665543322211 11 234455433333
Q ss_pred H-HHHHHhhhccCC
Q 011277 219 A-ILCLAMVFCAES 231 (489)
Q Consensus 219 ~-~~~~~~~~~~Es 231 (489)
+ ...+..+++|||
T Consensus 453 ~~~~i~~~~~~PET 466 (491)
T 4gc0_A 453 VLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHCCCC
T ss_pred HHHHHHHHheecCC
Confidence 3 334456789999
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.02 E-value=5.4e-10 Score=110.59 Aligned_cols=141 Identities=14% Similarity=0.028 Sum_probs=109.2
Q ss_pred ccchhhh-hhhc-CCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHH
Q 011277 71 NEPLESI-SLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR 148 (489)
Q Consensus 71 ~~~~~~i-~~~~-~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R 148 (489)
...+|.+ .++. |.+ +.+.++..+.+.++..++.++.|+++||+|||+++..+.++..++.++....++...+...
T Consensus 278 ~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 354 (438)
T 3o7q_A 278 WSYLIRYAVEEIPGMT--AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL- 354 (438)
T ss_dssp HHHHHHHHHHHSTTCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-
T ss_pred HHHHHHHhhhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-
Confidence 3445555 5554 665 4456788888899999999999999999999999999999999998888888887765555
Q ss_pred HHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277 149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV 216 (489)
Q Consensus 149 ~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i 216 (489)
++.|++.+...+....+..|..|++ |+...++.. ...+|..+++.+.+.+.+..+.++..|++..+
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 420 (438)
T 3o7q_A 355 TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL 420 (438)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 8889999988888888889999977 888888776 44577777777776666555524666665433
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.99 E-value=4.4e-10 Score=110.72 Aligned_cols=141 Identities=13% Similarity=-0.004 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccccccccccccc
Q 011277 90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV 169 (489)
Q Consensus 90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~ 169 (489)
.++..+...++..++.++.|+++||+|||+++..+.++.+++.++.+..++.+.+++..++.+++.+...+....++.|.
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ 340 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777778888999999999999999999988888888877777888888888888888887666556667899999
Q ss_pred CCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH-hhhccCC
Q 011277 170 SPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-MVFCAES 231 (489)
Q Consensus 170 ~~~~~Rg~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~-~~~~~Es 231 (489)
+|++.||...++ ++....+|..++|.+++.+.+..+ ++..|++.++..++..+. ....||.
T Consensus 341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 999999998888 477788888888888777665555 577777655444444333 3445554
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.92 E-value=7.6e-09 Score=103.99 Aligned_cols=139 Identities=12% Similarity=0.192 Sum_probs=96.7
Q ss_pred cCCCc---chHHHHHHHHHHHHHHHHHHHhhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHH
Q 011277 319 AGLSS---GLANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVL 394 (489)
Q Consensus 319 ~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (489)
.+.+. ++......++..++.+++|+++|| +|||+++..+..+..++.++.... .+ .... +...++.++
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~-~~~~--~~~~~l~g~ 120 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-----FG-ASAL--FGSIILIII 120 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-----CS-TTHH--HHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-----hh-HHHH--HHHHHHHHH
Confidence 45543 456677778899999999999999 899999988877777666554321 11 1111 111222222
Q ss_pred HHhcCccccccccccccCCchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277 395 TFALGAGPVPSLLLPEIFPSRI--RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 395 ~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
+.+. ..|....+.+|.+|++. |+++.+..+....++..++|.+...+.+..++.+.|.+.++..+++.+..
T Consensus 121 ~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 121 GTGF-LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHH-HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2221 23556678999999988 77788878889999999999988888888898888888766665554443
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.90 E-value=1.8e-08 Score=102.19 Aligned_cols=136 Identities=18% Similarity=0.214 Sum_probs=94.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhc-CCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcc
Q 011277 323 SGLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG 401 (489)
Q Consensus 323 ~~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (489)
.++......++..++.+++|+++||+ |||+++..+.++..++.++..... ... +......++.+++.+ ...
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~l~g~~~~-~~~ 127 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-----HSV--QGFYTGLFLIALGSG-GIK 127 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-----SCH--HHHHHHHHHHHHHHH-TTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-----ccH--HHHHHHHHHHHHhcc-ccc
Confidence 45666777788899999999999999 999998888777666655543221 011 111122222233222 234
Q ss_pred ccccccccccCCchhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277 402 PVPSLLLPEIFPSRIRAKAMAV---CMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV 466 (489)
Q Consensus 402 ~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
|....+.+|.+|++.|++..+. .....+++..++|.+...+.+..++.+.|.+.+++.++..+..
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 5666789999999999876666 8888888999999887777777888888887777766555444
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.86 E-value=3.6e-09 Score=102.42 Aligned_cols=155 Identities=12% Similarity=0.063 Sum_probs=108.7
Q ss_pred HHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277 313 SSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM 389 (489)
Q Consensus 313 ~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (489)
+.+.++.+.+. ++......++..++.++.|+++||+|||+.+..+.....++..+...... .+......
T Consensus 24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~ 95 (375)
T 2gfp_A 24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS--------LTVLIAAS 95 (375)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc--------HHHHHHHH
Confidence 44445555553 45566677888899999999999999999998888777777665544321 11111112
Q ss_pred HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhh
Q 011277 390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN 469 (489)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 469 (489)
++.+.+.+ ...+....+..|.+|+++|+++.+.......++..+++.+...+.+..++...+.+.+.+.++..+.....
T Consensus 96 ~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (375)
T 2gfp_A 96 AMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARW 174 (375)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 12345566889999999999999999999999999999887777666677788887777777666655567
Q ss_pred cccCCCC
Q 011277 470 VVETKGK 476 (489)
Q Consensus 470 ~~et~~~ 476 (489)
+||++.+
T Consensus 175 ~~~~~~~ 181 (375)
T 2gfp_A 175 MPETRPV 181 (375)
T ss_dssp SCCCSTT
T ss_pred CcccCCC
Confidence 8887654
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=50.96 E-value=6.1 Score=19.72 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=11.3
Q ss_pred hhHhhhhhchhhHH
Q 011277 107 LSGWIADGVGRRRA 120 (489)
Q Consensus 107 ~~g~l~Dr~GRr~~ 120 (489)
++|.|..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999864
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=27.62 E-value=1.2e+02 Score=20.75 Aligned_cols=31 Identities=10% Similarity=-0.153 Sum_probs=15.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011277 447 GPQLLYSIFGTFCLMAVAFVKRNVVETKGKS 477 (489)
Q Consensus 447 g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 477 (489)
|+...+.+...+.+.++-++-..+||..+..
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~a 61 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQA 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccC
Confidence 3333333333333444445556789876543
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=26.83 E-value=80 Score=26.43 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhHhhhhhchhh
Q 011277 95 SMCLGGAFIGSTLSGWIADGVGRR 118 (489)
Q Consensus 95 s~~~~g~~ig~~~~g~l~Dr~GRr 118 (489)
..|.+|+.+++.+.|++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 358889999999999999997654
Done!