BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011279
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 136/444 (30%), Positives = 219/444 (49%), Gaps = 51/444 (11%)
Query: 80 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
K+S+L NG+K+A+ + +++ LY+ GS +E G TH+L+R+AF+ST +
Sbjct: 7 KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRA 66
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMLT---------------------KV 178
+ +E +GGN Q ++SRE + Y V +ML
Sbjct: 67 MAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSA 126
Query: 179 KSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPR 237
+ EI EV P+ +L E +H+A YSG L +PL+ P I ++ L ++ + YT
Sbjct: 127 EYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPEN 186
Query: 238 MVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGDYRCQADS---GD--QLTH 291
V A GV H++ + + L D S HP K + YTGG+ C + G+ +L H
Sbjct: 187 TVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGE-SCIPPAPVFGNLPELFH 245
Query: 292 FVLAFE-LPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 350
+ FE LP D L LQ LL MYSRLY VLN++ V++
Sbjct: 246 IQIGFEGLP---IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVEN 302
Query: 351 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGE--VDQVQLDRAKQSTK 408
AF++ Y+ SG+FGI + +A+++ A+++ + + + + ++ RAK K
Sbjct: 303 CVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLK 362
Query: 409 SAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMA 468
S++LMNLES++V ED+GRQVL +G + PV + +E + DI+ VA+ + + + A
Sbjct: 363 SSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNA 422
Query: 469 ----------------SYGDVINV 476
S+GDV NV
Sbjct: 423 GNGKGRATVVMQGDRGSFGDVENV 446
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|O Chain O, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|B Chain B, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|O Chain O, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|O Chain O, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|O Chain O, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|B Chain B, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|O Chain O, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|B Chain B, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|O Chain O, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|B Chain B, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|O Chain O, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|B Chain B, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|O Chain O, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|B Chain B, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|O Chain O, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|B Chain B, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|O Chain O, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|B Chain B, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|O Chain O, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|B Chain B, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|O Chain O, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|B Chain B, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|O Chain O, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 441
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 128/422 (30%), Positives = 206/422 (48%), Gaps = 30/422 (7%)
Query: 80 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
+I+ LPNG+ IAS + SP + I +++ GS YE+ + GT HLL + +T+ S R
Sbjct: 27 EITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLLRLASPLTTKGASSFR 86
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYV-------------PE--------MLTKV 178
I R +EA+GG++ ++RE+M Y + L+ +V PE + ++
Sbjct: 87 ITRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVTDLQPQL 146
Query: 179 KSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRM 238
K + + +PQ +LE +H+A Y ALANPL P+ I ++ S L FV N+T RM
Sbjct: 147 KVDKAVAFQSPQVGVLENLHAAAYKTALANPLYCPDYRIGKITSEQLHHFVQNNFTSARM 206
Query: 239 VLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFEL 298
L GV+H L VAE L ++ S K+ Y GG+ R Q +G L H + E
Sbjct: 207 ALVGIGVKHSDLKQVAEQFL-NIRSGAGTSSAKATYWGGEIREQ--NGHSLVHAAVVTE- 262
Query: 299 PGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIY 358
G +A +VLQ +L + S+LY+ V Q SAF+ Y
Sbjct: 263 -GAAVGSAEANAFSVLQHVL---GAGPLIKRGSSVTSKLYQGVAKATTQPFDASAFNVNY 318
Query: 359 NHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR 418
+ SG+FG + + + I A +L A G V + + +AK K+ LM++E+
Sbjct: 319 SDSGLFGFYTISQAAHAGEVIRAAMNQL-KAAAQGGVTEEDVTKAKNQLKATYLMSVETA 377
Query: 419 MVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPS 478
+ +IG + L G + ++ VT+ D+ + A+K +S +MA+ GD+ + P
Sbjct: 378 QGLLNEIGSEALLSGTHTAPSVVAQKIDSVTSADVVNAAKKFVSGKKSMAASGDLGSTPF 437
Query: 479 YD 480
D
Sbjct: 438 LD 439
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 174 bits (441), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 128/428 (29%), Positives = 208/428 (48%), Gaps = 34/428 (7%)
Query: 76 PGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR 135
P +I+ LPNG+ IAS + SP ++I +++ GS YE+ + GT+HLL + +T+
Sbjct: 4 PQDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKGA 63
Query: 136 SHLRIVREVEAIGGNVQASASREQMGYSFDALK-------------TYVPE--------M 174
S +I R +EA+GG + ++RE M Y+ + L+ T PE +
Sbjct: 64 SSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADL 123
Query: 175 LTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYT 234
++K + + NPQ+ ++E +H+A Y ALA+ L P+ I ++ S L +FV ++T
Sbjct: 124 QPQLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHFT 183
Query: 235 GPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVL 294
RM L GV H L +VAE LL+ + K+ Y GG+ R Q +GD L H +
Sbjct: 184 SARMALVGLGVSHPVLKNVAEQLLNIRGGL-GLSGAKAKYRGGEIREQ--NGDSLVHAAI 240
Query: 295 AFELP--GGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFS 352
E GG +A +VLQ +L S LY+ V Q S
Sbjct: 241 VAESAAIGG----AEANAFSVLQHVLGANPHVKRGLNAT---SSLYQAVAKGVHQPFDVS 293
Query: 353 AFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAIL 412
AF+ Y+ SG+FG + + + + I A ++ ++A G V + AK K+ L
Sbjct: 294 AFNASYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQ-GNVSNENVQAAKNKLKAKYL 352
Query: 413 MNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGD 472
M++ES E++G Q L G P L+ ++ V D+ A+K +S +MA+ G+
Sbjct: 353 MSVESSEGFLEEVGSQALAAGSYNPPSTVLQQIDAVADADVIKAAKKFVSRQKSMAASGN 412
Query: 473 VINVPSYD 480
+ + P D
Sbjct: 413 LGHTPFVD 420
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/429 (29%), Positives = 209/429 (48%), Gaps = 36/429 (8%)
Query: 76 PGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR 135
P +I+ LPNG+ IAS + SP ++I +++ GS YE+ + GT+HLL + +T+
Sbjct: 4 PQDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKGA 63
Query: 136 SHLRIVREVEAIGGNVQASASREQMGYSFDALK-------------TYVPE--------M 174
S +I R +EA+GG + ++RE M Y+ + L+ T PE +
Sbjct: 64 SSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADL 123
Query: 175 LTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYT 234
++K + + NPQ+ ++E +H+A Y ALA+ L P+ I ++ S L +FV ++T
Sbjct: 124 QPQLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHFT 183
Query: 235 GPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVL 294
RM L GV H L +VAE LL+ + K+ Y GG+ R Q +GD L H +
Sbjct: 184 SARMALVGLGVSHPVLKNVAEQLLNIRGGL-GLSGAKAKYRGGEIREQ--NGDSLVHAAI 240
Query: 295 AFELP--GGWHKDKDAMTLTVLQMLLXXX-XXXXXXXXXXXMYSRLYRRVLNEFPQVQSF 351
E GG +A +VLQ +L +Y + + V N F
Sbjct: 241 VAESAAIGG----AEANAFSVLQHVLGANPHVKRGLNATSSLYQAVAKGVHNPF----DV 292
Query: 352 SAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAI 411
SAF+ Y+ SG+FG + + + + I A ++ ++A G V + AK K+
Sbjct: 293 SAFNASYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQ-GNVSNENVQAAKNKLKAKY 351
Query: 412 LMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYG 471
LM++ES E++G Q L G P L+ ++ V D+ A+K +S +MA+ G
Sbjct: 352 LMSVESSEGFLEEVGSQALAAGSYNPPSTVLQQIDAVADADVIKAAKKFVSRQKSMAASG 411
Query: 472 DVINVPSYD 480
++ + P D
Sbjct: 412 NLGHTPFVD 420
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 127/447 (28%), Positives = 209/447 (46%), Gaps = 60/447 (13%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NGV++ASE S P ++ +++ GS YES + G + LE +AF+ T+NR
Sbjct: 13 ETQVSQLDNGVRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFLEHLAFKGTKNRPQ 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVP---EMLTKVKSEIS----------- 183
+ +EVE++G ++ A +SRE Y AL VP E+L + S
Sbjct: 73 NALEKEVESMGAHLNAYSSREHTAYYIKALSKDVPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 184 ----EVSNNPQSL---LLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTG 235
E+ N S+ + +H+ + G LA + P I +L+ L E+++ +YT
Sbjct: 133 VIVRELQENDTSMREVVFNYLHATAFQGTGLAQSVEGPSENIRKLSRADLTEYLSTHYTA 192
Query: 236 PRMVLAAS-GVEHDQLVSVAEPLLSDLPSIHPREE----PKSVYTGGDYRCQADSGDQLT 290
PRMVLAA+ GVEH QL+ +A+ +P + + K +TG R + D G L
Sbjct: 193 PRMVLAAAGGVEHQQLLELAQKHFGGVPFTYDDDAVPTLSKCRFTGSQIRHRED-GLPLA 251
Query: 291 HFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYR----------- 339
H +A E PG H D L LQ+ Y R Y
Sbjct: 252 HVAIAVEGPGWAHPD-----LVALQV----------ANAIIGHYDRTYGGGLHSSSPLAS 296
Query: 340 -RVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQV 398
V N+ QSF FS Y+ +G+FG + + + + + + T + +
Sbjct: 297 IAVTNKL--CQSFQTFSICYSETGLFGFYFVCDRMSIDDMMFVLQGQWMRLCT--SISES 352
Query: 399 QLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQ 458
++ R K ++A++ +L+ V EDIGR++LTYG R P+E + + + V A+ + V
Sbjct: 353 EVLRGKNFLRNALVSHLDGTTPVCEDIGRELLTYGRRIPLEEWEERLAEVDARMVREVCS 412
Query: 459 KLLSSPL-TMASYGDVINVPSYDAVSS 484
K + +A G + +P Y+ + S
Sbjct: 413 KYIYDQCPAVAGPGPIEQLPDYNRIRS 439
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/427 (28%), Positives = 201/427 (47%), Gaps = 30/427 (7%)
Query: 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
P + + LPNG+ IAS + +P + I L++ GS YE+ + GT+HLL + +T+
Sbjct: 20 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKG 79
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALK-------------TYVPE-------- 173
S +I R +EA+GG + +++RE M Y+ + L+ T PE
Sbjct: 80 ASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAA 139
Query: 174 MLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENY 233
+ +++ + + NPQ+ ++E +H+A Y ALAN L P+ I ++ L ++V ++
Sbjct: 140 LQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHF 199
Query: 234 TGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFV 293
T RM L GV H L VAE L+ + K+ Y GG+ R Q +GD L H
Sbjct: 200 TSARMALIGLGVSHPVLKQVAEQFLNIRGGLG-LSGAKAKYHGGEIREQ--NGDSLVHAA 256
Query: 294 LAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSA 353
L E +A +VLQ +L S LY+ V Q SA
Sbjct: 257 LVAE--SAAIGSAEANAFSVLQHVLGAGPHVKRGSNAT---SSLYQAVAKGVHQPFDVSA 311
Query: 354 FSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM 413
F+ Y+ SG+FG + + I A ++ ++A G + + AK K+ LM
Sbjct: 312 FNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLM 370
Query: 414 NLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDV 473
++ES +++G Q L G P L+ ++ V D+ + A+K +S +MA+ G++
Sbjct: 371 SVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNL 430
Query: 474 INVPSYD 480
+ P D
Sbjct: 431 GHTPFID 437
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/427 (28%), Positives = 202/427 (47%), Gaps = 30/427 (7%)
Query: 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
P + + LPNG+ IAS + +P + I L++ GS YE+ + GT+HLL + +T+
Sbjct: 4 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKG 63
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALK-------------TYVPE-------- 173
S +I R +EA+GG + +++RE M Y+ + L+ T PE
Sbjct: 64 ASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAA 123
Query: 174 MLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENY 233
+ +++ + + NPQ+ ++E +H+A Y ALAN L P+ I ++ L ++V ++
Sbjct: 124 LQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHF 183
Query: 234 TGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFV 293
T RM L GV H L VAE L+ + K+ Y GG+ R Q +GD L H
Sbjct: 184 TSARMALIGLGVSHPVLKQVAEQFLNIRGGL-GLSGAKAKYHGGEIREQ--NGDSLVHAA 240
Query: 294 LAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSA 353
L E + +A +VLQ +L S LY+ V Q SA
Sbjct: 241 LVAESAAIGSAEANA--FSVLQHVLGAGPHVKRGSNAT---SSLYQAVAKGVHQPFDVSA 295
Query: 354 FSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM 413
F+ Y+ SG+FG + + I A ++ ++A G + + AK K+ LM
Sbjct: 296 FNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLM 354
Query: 414 NLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDV 473
++ES +++G Q L G P L+ ++ V D+ + A+K +S +MA+ G++
Sbjct: 355 SVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNL 414
Query: 474 INVPSYD 480
+ P D
Sbjct: 415 GHTPFID 421
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/427 (28%), Positives = 201/427 (47%), Gaps = 30/427 (7%)
Query: 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
P + + LPNG+ IAS + +P + I L++ GS YE+ + GT+HLL + +T+
Sbjct: 34 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKG 93
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALK-------------TYVPE-------- 173
S +I R +EA+GG + +++RE M Y+ + L+ T PE
Sbjct: 94 ASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAA 153
Query: 174 MLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENY 233
+ +++ + + NPQ+ ++E +H+A Y ALAN L P+ I ++ L ++V ++
Sbjct: 154 LQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHF 213
Query: 234 TGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFV 293
T RM L GV H L VAE L+ + K+ Y GG+ R Q +GD L H
Sbjct: 214 TSARMALIGLGVSHPVLKQVAEQFLNIRGGL-GLSGAKAKYHGGEIREQ--NGDSLVHAA 270
Query: 294 LAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSA 353
L E +A +VLQ +L S LY+ V Q SA
Sbjct: 271 LVAE--SAAIGSAEANAFSVLQHVLGAGPHVKRGSNAT---SSLYQAVAKGVHQPFDVSA 325
Query: 354 FSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM 413
F+ Y+ SG+FG + + I A ++ ++A G + + AK K+ LM
Sbjct: 326 FNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLM 384
Query: 414 NLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDV 473
++ES +++G Q L G P L+ ++ V D+ + A+K +S +MA+ G++
Sbjct: 385 SVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNL 444
Query: 474 INVPSYD 480
+ P D
Sbjct: 445 GHTPFID 451
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 114/435 (26%), Positives = 197/435 (45%), Gaps = 36/435 (8%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NG+++ASE S P ++ +++ GS YES + G + +E +AF+ T+NR
Sbjct: 13 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVP---EMLTKVKSEIS----------- 183
+ +EVE++G ++ A ++RE Y AL +P E+L + S
Sbjct: 73 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 184 ----EVSNNPQSL---LLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTG 235
E+ N S+ + +H+ + G LA + P + +L+ L E+++ +Y
Sbjct: 133 VILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 192
Query: 236 PRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKSV----YTGGDYRCQADSGDQLT 290
PRMVLAA+G +EH QL+ +A+ S L + + ++ +TG C + G L
Sbjct: 193 PRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLA 251
Query: 291 HFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 350
H +A E PG H D A LQ+ S + QS
Sbjct: 252 HVAIAVEGPGWAHPDNVA-----LQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQS 306
Query: 351 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSA 410
F F+ Y +G+ G + + + + + + T +V R K ++A
Sbjct: 307 FQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVL--RGKNLLRNA 364
Query: 411 ILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPL-TMAS 469
++ +L+ V EDIGR +LTYG R P+ + + V A+ + V K +A
Sbjct: 365 LVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAG 424
Query: 470 YGDVINVPSYDAVSS 484
+G V +P Y+ + S
Sbjct: 425 FGPVEQLPDYNRIRS 439
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/435 (25%), Positives = 197/435 (45%), Gaps = 36/435 (8%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NG+++ASE S P ++ +++ GS YES + G + +E +AF+ T+NR
Sbjct: 47 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 106
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVP---EMLTKVKSEIS----------- 183
+ +EVE++G ++ A ++RE Y AL +P E+L + S
Sbjct: 107 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 166
Query: 184 ----EVSNNPQSL---LLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTG 235
E+ N S+ + +H+ + G LA + P + +L+ L E+++ +Y
Sbjct: 167 VILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 226
Query: 236 PRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKSV----YTGGDYRCQADSGDQLT 290
PRMVLAA+G +EH QL+ +A+ S L + + ++ +TG C + G L
Sbjct: 227 PRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLA 285
Query: 291 HFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 350
H +A E PG H D A LQ+ S + QS
Sbjct: 286 HVAIAVEGPGWAHPDNVA-----LQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQS 340
Query: 351 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSA 410
F F+ Y +G+ G + + + + + + T +V R K ++A
Sbjct: 341 FQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVL--RGKNLLRNA 398
Query: 411 ILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPL-TMAS 469
++ +L+ V EDIGR +LTYG R P+ + + V A+ + V K +A
Sbjct: 399 LVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAG 458
Query: 470 YGDVINVPSYDAVSS 484
+G + +P Y+ + S
Sbjct: 459 FGPIEQLPDYNRIRS 473
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/435 (25%), Positives = 197/435 (45%), Gaps = 36/435 (8%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NG+++ASE S P ++ +++ GS YES + G + +E +AF+ T+NR
Sbjct: 13 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVP---EMLTKVKSEIS----------- 183
+ +EVE++G ++ A ++RE Y AL +P E+L + S
Sbjct: 73 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 184 ----EVSNNPQSL---LLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTG 235
E+ N S+ + +H+ + G LA + P + +L+ L E+++ +Y
Sbjct: 133 VILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 192
Query: 236 PRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKSV----YTGGDYRCQADSGDQLT 290
PRMVLAA+G +EH QL+ +A+ S L + + ++ +TG C + G L
Sbjct: 193 PRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLA 251
Query: 291 HFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 350
H +A E PG H D A LQ+ S + QS
Sbjct: 252 HVAIAVEGPGWAHPDNVA-----LQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQS 306
Query: 351 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSA 410
F F+ Y +G+ G + + + + + + T +V R K ++A
Sbjct: 307 FQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVL--RGKNLLRNA 364
Query: 411 ILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPL-TMAS 469
++ +L+ V EDIGR +LTYG R P+ + + V A+ + V K +A
Sbjct: 365 LVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAG 424
Query: 470 YGDVINVPSYDAVSS 484
+G + +P Y+ + S
Sbjct: 425 FGPIEQLPDYNRIRS 439
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/435 (25%), Positives = 195/435 (44%), Gaps = 36/435 (8%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T ++TL NG+++ASE S P ++ +++G GS YE+ + G + +E +AF+ T+ R
Sbjct: 13 ETNVTTLDNGLRVASEESSQPTCTVGVWIGAGSRYENEKNNGAGYFVEHLAFKGTKKRPC 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVP---EMLTKVK--------------- 179
+EVE++G + SREQ + AL +P E+L V
Sbjct: 73 AAFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVELLADVVQNCALEESQIEKERG 132
Query: 180 ---SEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTG 235
E+ E+ N+ ++ + +H+ + G ALA + I L L ++ ++
Sbjct: 133 VILQELKEMDNDMTNVTFDYLHATAFQGTALARTVEGTTENIKHLTRADLASYIDTHFKA 192
Query: 236 PRMVLAAS-GVEHDQLVSVAEPLLSDLPSIHPREE----PKSVYTGGDYRCQADSGDQLT 290
PRMVLAA+ G+ H +LV A S + + + P+ +TG + R + D +
Sbjct: 193 PRMVLAAAGGISHKELVDAARQHFSGVSFTYKEDAVPILPRCRFTGSEIRAR-DDALPVA 251
Query: 291 HFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 350
H LA E P GW D D + L V ++ + SRL + E S
Sbjct: 252 HVALAVEGP-GW-ADPDNVVLHVANAII--GRYDRTFGGGKHLSSRLAALAV-EHKLCHS 306
Query: 351 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSA 410
F F+ Y+ +G+FG + + A E + + T +V+ RAK +SA
Sbjct: 307 FQTFNTSYSDTGLFGFHFVADPLSIDDMMFCAQGEWMRLCTSTTESEVK--RAKNHLRSA 364
Query: 411 ILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPL-TMAS 469
++ L+ V E IG +L YG R +E + + V A+ + V K + +A+
Sbjct: 365 MVAQLDGTTPVCETIGSHLLNYGRRISLEEWDSRISAVDARMVRDVCSKYIYDKCPALAA 424
Query: 470 YGDVINVPSYDAVSS 484
G + + Y+ + S
Sbjct: 425 VGPIEQLLDYNRIRS 439
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 124/445 (27%), Positives = 205/445 (46%), Gaps = 42/445 (9%)
Query: 76 PGKTKISTLPNGVKIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
PG T+ S LPNG+ IA+E + A++ ++V GS E+ + GT H LE +AF+ T+N
Sbjct: 5 PG-TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQN 63
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVP-------EMLTK---------- 177
R I E+E IG ++ A SRE Y +L+ +P ++LTK
Sbjct: 64 RPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIER 123
Query: 178 ----VKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAEN 232
+ E EV ++ + +H Y L +L P I + T L++++ +N
Sbjct: 124 ERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKN 183
Query: 233 YTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH-------PREEPKSVYTGGDYRCQAD 284
Y G RMVLA +G V+H++LV A+ +P PR P V+ G+ R +
Sbjct: 184 YKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPR-GPLPVFCRGE-RFIKE 241
Query: 285 SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNE 344
+ TH +A E G D Q ++ S L
Sbjct: 242 NTLPTTHIAIALE--GVSWSAPDYFVALATQAIVGNWDRAIGTGTNSP--SPLAVAASQN 297
Query: 345 FPQVQSFSAFSNIYNHSGMFGIQGTTGSD--FVSKAIDLAARELISVATPGEVDQVQLDR 402
S+ +FS Y SG++G+ T S+ V ++ +E + + G++ +++R
Sbjct: 298 GSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKS-GKISDAEVNR 356
Query: 403 AKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQ-KLL 461
AK K+A+L++L+ + EDIGRQV+T G+R E + V+ +T DI A +L
Sbjct: 357 AKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQ 416
Query: 462 SSPLTMASYGDVINVPSYDAVSSKF 486
+ P++M + G+ VP+ + K
Sbjct: 417 NKPVSMVALGNTSTVPNVSYIEEKL 441
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 123/445 (27%), Positives = 205/445 (46%), Gaps = 42/445 (9%)
Query: 76 PGKTKISTLPNGVKIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
PG T+ S LPNG+ IA+E + A++ ++V GS E+ + GT H L+ +AF+ T+N
Sbjct: 5 PG-TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLQHLAFKGTQN 63
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVP-------EMLTK---------- 177
R I E+E IG ++ A SRE Y +L+ +P ++LTK
Sbjct: 64 RPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIER 123
Query: 178 ----VKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAEN 232
+ E EV ++ + +H Y L +L P I + T L++++ +N
Sbjct: 124 ERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKN 183
Query: 233 YTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH-------PREEPKSVYTGGDYRCQAD 284
Y G RMVLA +G V+H++LV A+ +P PR P V+ G+ R +
Sbjct: 184 YKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPR-GPLPVFCRGE-RFIKE 241
Query: 285 SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNE 344
+ TH +A E G D Q ++ S L
Sbjct: 242 NTLPTTHIAIALE--GVSWSAPDYFVALATQAIVGNWDRAIGTGTNSP--SPLAVAASQN 297
Query: 345 FPQVQSFSAFSNIYNHSGMFGIQGTTGSD--FVSKAIDLAARELISVATPGEVDQVQLDR 402
S+ +FS Y SG++G+ T S+ V ++ +E + + G++ +++R
Sbjct: 298 GSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKS-GKISDAEVNR 356
Query: 403 AKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQ-KLL 461
AK K+A+L++L+ + EDIGRQV+T G+R E + V+ +T DI A +L
Sbjct: 357 AKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQ 416
Query: 462 SSPLTMASYGDVINVPSYDAVSSKF 486
+ P++M + G+ VP+ + K
Sbjct: 417 NKPVSMVALGNTSTVPNVSYIEEKL 441
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 180/405 (44%), Gaps = 40/405 (9%)
Query: 83 TLPNGVKIASET-SVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIV 141
TL NGV+I +E S SI ++VG GS YES G +H LE M F+ T RS I
Sbjct: 6 TLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIA 65
Query: 142 REVEAIGGNVQASASRE-----------QMGYSFDAL------KTYVPEMLTK----VKS 180
++IGG V A S+E G + D L T+ E L K V
Sbjct: 66 EFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFE 125
Query: 181 EISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMV 239
EI V + P ++ + + SA Y +L P+L +N N +L ++ YTG +V
Sbjct: 126 EIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVV 185
Query: 240 LAASGVEHDQLVSVAEPLLSDL-PSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFEL 298
++ +G HD+L+ + S + P+ + + K ++ R + H L +
Sbjct: 186 ISVAGNVHDELIDKIKETFSQVKPTTYNYQGEKPMFLPN--RIVRKKETEQAHLCLGY-- 241
Query: 299 PGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIY 358
PG DKD L +L +L M SRL++ + + S ++ + +
Sbjct: 242 PGLPIGDKDVYALVLLNNVL-----------GGSMSSRLFQDIREKRGLCYSVFSYHSSF 290
Query: 359 NHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR 418
SGM I TG D + + + +E S + + +L+ K+ K +++++LES
Sbjct: 291 RDSGMLTIYAGTGHDQLDDLV-YSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLEST 349
Query: 419 MVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSS 463
G+ L + + ++ ++ + V +D++ +A+ LLS+
Sbjct: 350 NSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLAKILLSA 394
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|B Chain B, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|M Chain M, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|B Chain B, Yeast Cytochrome Bc1 Complex
pdb|1P84|B Chain B, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|B Chain B, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|B Chain B, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|M Chain M, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|B Chain B, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|M Chain M, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 352
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 30/208 (14%)
Query: 90 IASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGG 149
+++ + + ++++++ V GS Y + G HLL R F++T RS L++VRE E +GG
Sbjct: 3 VSARDAPTKISTLAVKVHGGSRYATKD--GVAHLLNRFNFQNTNTRSALKLVRESELLGG 60
Query: 150 NVQASASREQMGYSFDALKTYVPEMLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALA-- 207
+++ RE + LK +P + + + + + P L + +A Y A+A
Sbjct: 61 TFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQ 120
Query: 208 --------------------NPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE 246
NPLL + R++ +++F + YT + ++ VE
Sbjct: 121 CPVKSAEDQLYAITFRKGLGNPLLY--DGVERVSLQDIKDFADKVYTKENLEVSGENVVE 178
Query: 247 HDQLVSVAEPLLSDLP---SIHPREEPK 271
D V E LLS LP S+ + EPK
Sbjct: 179 ADLKRFVDESLLSTLPAGKSLVSKSEPK 206
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 111/270 (41%), Gaps = 37/270 (13%)
Query: 82 STLPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI 140
+TLPNG+K+ E +P ++ GS+ E+ + G H LE M F+ T++
Sbjct: 10 TTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEF 69
Query: 141 VREVEAIGGNVQASASREQ---------------MGYSFDALKTYV--PEMLTKVKSEIS 183
+ V A+GG A +R+ MG D + V E+ K I+
Sbjct: 70 SKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIA 129
Query: 184 E-----VSNNPQSLLLEAIHSAGYSGALANPLLAP----ESAINRLNSTLLEEFVAENYT 234
E + P+S EA+ +A Y +A+P P + I + + + ++ Y
Sbjct: 130 EERRWRTDDKPRSKAYEALMAASY---VAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWY- 185
Query: 235 GPR--MVLAASGVEHDQLVSVAEPLLSDLPSIH--PREEPKSVYTGGDYRCQADSGDQLT 290
GP V+ VEH+ + +AE L + R++ G R + +L
Sbjct: 186 GPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAELP 245
Query: 291 HFVLAFELPG--GWHKDKDAMTLTVLQMLL 318
+ LA+ +P K +DA L +L +L
Sbjct: 246 YLALAWHVPAIVDLDKSRDAYALEILAAVL 275
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 111/270 (41%), Gaps = 37/270 (13%)
Query: 82 STLPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI 140
+TLPNG+K+ E +P ++ GS+ E+ + G H LE M F+ T++
Sbjct: 10 TTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEF 69
Query: 141 VREVEAIGGNVQASASREQ---------------MGYSFDALKTYV--PEMLTKVKSEIS 183
+ V A+GG A +R+ MG D + V E+ K I+
Sbjct: 70 SKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIA 129
Query: 184 E-----VSNNPQSLLLEAIHSAGYSGALANPLLAP----ESAINRLNSTLLEEFVAENYT 234
E + P+S EA+ +A Y +A+P P + I + + + ++ Y
Sbjct: 130 EERRWRTDDKPRSKAYEALMAASY---VAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWY- 185
Query: 235 GPR--MVLAASGVEHDQLVSVAEPLLSDLPSIH--PREEPKSVYTGGDYRCQADSGDQLT 290
GP V+ VEH+ + +AE L + R++ G R + +L
Sbjct: 186 GPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAELP 245
Query: 291 HFVLAFELPG--GWHKDKDAMTLTVLQMLL 318
+ LA+ +P K +DA L +L +L
Sbjct: 246 YLALAWHVPAIVDLDKSRDAYALEILAAVL 275
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 95/452 (21%), Positives = 189/452 (41%), Gaps = 87/452 (19%)
Query: 80 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
+++ L NG+ +A+E + + AS+ + G G+ E+P + G ++L + + F S N +
Sbjct: 2 EVTQLSNGIVVATEHNPAHTASVGVVFGSGAANENPYNNGVSNLWKNI-FLSKENSA--V 58
Query: 140 IVREVEAIGGNVQASASREQMGY-----------SFDAL-KTYVPE---MLTKVKSEISE 184
+E A+ N+ SR+ Y S D L ++++ + +L+ E ++
Sbjct: 59 AAKEGLALSSNI----SRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATK 114
Query: 185 VS----------NNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENY 233
S N+ + +LE +HS + L+ P ++ L LE F ++
Sbjct: 115 KSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHF 174
Query: 234 TGPRMVLAASG-VEHDQLV-SVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADS------ 285
V+ +G ++H+ LV S+ LS P + K+ + G + R + D+
Sbjct: 175 LNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAWI 234
Query: 286 -----GDQL---THFV--LAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYS 335
G+ + +FV LA ++ G ++ + A L +++L
Sbjct: 235 SLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLL------------------ 276
Query: 336 RLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGS-----DFVSKAIDLAARELISVA 390
+ E+ +F+ FS Y SG++G T + D + + R ISV
Sbjct: 277 ----DNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVT 332
Query: 391 TPGEVDQVQLDRAKQSTKSAILMNLESRMVVSED--IGRQVLTYGERKPVEHFLKTVEGV 448
+++RAK K + ES V++ +G +VL G + + K ++ +
Sbjct: 333 ------DTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAI 386
Query: 449 TAKDIASVA-QKLLSSPLTMASYGDVINVPSY 479
T KD+ + A ++L + +A G + + Y
Sbjct: 387 TVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDY 418
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 96/453 (21%), Positives = 189/453 (41%), Gaps = 88/453 (19%)
Query: 80 KISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHL 138
+++ L NG+ +A+E + S AS+ + G G+ E+P + G ++L + + F S N +
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNI-FLSKENSA-- 58
Query: 139 RIVREVEAIGGNVQASASREQMGY-----------SFDAL-KTYVPE---MLTKVKSEIS 183
+E A+ N+ SR+ Y S D L ++++ + +L+ E +
Sbjct: 59 VAAKEGLALSSNI----SRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEAT 114
Query: 184 EVS----------NNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAEN 232
+ S N+ + +LE +HS + L+ P ++ L LE F +
Sbjct: 115 KKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNH 174
Query: 233 YTGPRMVLAASG-VEHDQLV-SVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADS----- 285
+ V+ +G ++H+ LV S+ LS P + K+ + G + R + D+
Sbjct: 175 FLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAW 234
Query: 286 ------GDQL---THFV--LAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMY 334
G+ + +FV LA ++ G ++ + A L +++L
Sbjct: 235 ISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLL----------------- 277
Query: 335 SRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGS-----DFVSKAIDLAARELISV 389
+ E+ +F+ FS Y SG++G T + D + + R ISV
Sbjct: 278 -----DNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISV 332
Query: 390 ATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSED--IGRQVLTYGERKPVEHFLKTVEG 447
+++RAK K + ES V++ +G +VL G + + K ++
Sbjct: 333 T------DTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDA 386
Query: 448 VTAKDIASVA-QKLLSSPLTMASYGDVINVPSY 479
+T KD+ + A ++L + +A G + + Y
Sbjct: 387 ITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDY 419
>pdb|3V6O|A Chain A, Leptin Receptor-Antibody Complex
pdb|3V6O|B Chain B, Leptin Receptor-Antibody Complex
Length = 206
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 259 SDLPSIHPREEPKSVYTGGD--YRC 281
SD+PSIHP EPK Y D Y C
Sbjct: 47 SDIPSIHPISEPKDCYLQSDGFYEC 71
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H LE M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLEHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFD 165
+ + G+ A S E Y FD
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFD 123
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 27 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 86
Query: 143 E-VEAIGGNVQASASREQMGYSFD 165
+ + G+ A S E Y FD
Sbjct: 87 QFLSEHAGSSNAFTSGEHTNYYFD 110
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFD 165
+ + G+ A S E Y FD
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFD 123
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFD 165
+ + G+ A S E Y FD
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFD 123
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 69 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 128
Query: 143 E-VEAIGGNVQASASREQMGYSFD 165
+ + G+ A S E Y FD
Sbjct: 129 QFLSEHAGSSNAFTSGEHTNYYFD 152
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFD 165
+ + G+ A S E Y FD
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFD 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,779,166
Number of Sequences: 62578
Number of extensions: 419589
Number of successful extensions: 1078
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 32
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)