Query 011279
Match_columns 489
No_of_seqs 252 out of 1648
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 23:35:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2067 Mitochondrial processi 100.0 4.2E-89 9E-94 640.2 34.6 425 56-489 7-460 (472)
2 KOG0960 Mitochondrial processi 100.0 1.5E-66 3.1E-71 487.7 36.8 403 77-487 32-463 (467)
3 COG0612 PqqL Predicted Zn-depe 100.0 1.1E-50 2.4E-55 418.3 40.5 390 77-479 15-437 (438)
4 TIGR02110 PQQ_syn_pqqF coenzym 100.0 1.7E-41 3.6E-46 357.6 39.1 306 81-406 2-345 (696)
5 PRK15101 protease3; Provisiona 100.0 1.3E-40 2.7E-45 375.1 37.6 381 75-474 40-463 (961)
6 KOG2583 Ubiquinol cytochrome c 100.0 5.7E-36 1.2E-40 282.8 37.7 387 78-482 22-429 (429)
7 PTZ00432 falcilysin; Provision 100.0 1.3E-32 2.9E-37 307.7 39.3 369 77-462 90-561 (1119)
8 PRK15101 protease3; Provisiona 100.0 5.3E-29 1.2E-33 280.9 36.3 370 78-474 522-930 (961)
9 COG1025 Ptr Secreted/periplasm 100.0 5.5E-27 1.2E-31 245.7 34.8 382 74-474 19-442 (937)
10 KOG0959 N-arginine dibasic con 100.0 7.5E-26 1.6E-30 241.3 35.5 380 77-473 26-446 (974)
11 COG1026 Predicted Zn-dependent 99.9 4.3E-22 9.2E-27 210.0 28.2 381 79-476 22-461 (978)
12 PF05193 Peptidase_M16_C: Pept 99.9 2.8E-22 6.1E-27 181.1 17.6 173 219-407 1-184 (184)
13 KOG0961 Predicted Zn2+-depende 99.8 1.1E-17 2.4E-22 167.9 28.0 372 86-482 28-460 (1022)
14 KOG2019 Metalloendoprotease HM 99.8 4.5E-17 9.7E-22 163.8 27.5 382 80-479 55-501 (998)
15 PF00675 Peptidase_M16: Insuli 99.8 8.2E-18 1.8E-22 147.3 14.2 126 89-214 1-149 (149)
16 COG1026 Predicted Zn-dependent 99.8 7.6E-16 1.6E-20 163.2 29.5 381 68-474 517-959 (978)
17 PTZ00432 falcilysin; Provision 99.7 7.4E-15 1.6E-19 165.5 30.2 368 83-478 664-1108(1119)
18 COG1025 Ptr Secreted/periplasm 99.7 4.6E-14 9.9E-19 149.3 33.8 390 56-473 476-909 (937)
19 KOG2019 Metalloendoprotease HM 99.6 1.7E-12 3.7E-17 131.3 26.1 364 82-473 564-985 (998)
20 KOG0959 N-arginine dibasic con 99.6 1.5E-11 3.2E-16 132.6 33.8 378 55-462 482-909 (974)
21 KOG0961 Predicted Zn2+-depende 98.7 3.9E-06 8.5E-11 86.0 21.5 381 80-487 542-997 (1022)
22 PF03410 Peptidase_M44: Protei 98.0 0.00012 2.6E-09 72.4 13.5 166 82-266 2-194 (590)
23 COG0612 PqqL Predicted Zn-depe 98.0 0.00022 4.7E-09 73.9 16.4 169 288-475 37-209 (438)
24 TIGR02110 PQQ_syn_pqqF coenzym 98.0 0.00078 1.7E-08 72.6 20.6 177 278-474 10-195 (696)
25 PHA03081 putative metalloprote 97.6 0.00085 1.8E-08 66.7 12.9 165 82-266 2-194 (595)
26 PF08367 M16C_assoc: Peptidase 97.2 0.0073 1.6E-07 57.3 13.4 114 67-182 59-184 (248)
27 KOG0960 Mitochondrial processi 96.8 0.032 7E-07 54.6 13.8 172 286-475 51-225 (467)
28 PF00675 Peptidase_M16: Insuli 96.5 0.23 5E-06 42.8 16.4 128 287-434 10-139 (149)
29 KOG2067 Mitochondrial processi 94.0 0.11 2.3E-06 51.2 5.7 120 342-471 90-212 (472)
30 PF09851 SHOCT: Short C-termin 81.2 2.3 4.9E-05 25.9 3.0 26 383-408 5-30 (31)
31 PF08367 M16C_assoc: Peptidase 70.9 94 0.002 29.2 13.9 116 288-415 90-210 (248)
32 KOG1374 Gamma tubulin [Cytoske 67.5 39 0.00084 33.6 9.0 171 310-485 118-324 (448)
33 KOG2583 Ubiquinol cytochrome c 63.6 1.7E+02 0.0037 29.5 15.2 168 283-474 37-211 (429)
34 cd05026 S-100Z S-100Z: S-100Z 46.6 1.1E+02 0.0024 23.7 7.1 77 372-449 2-83 (93)
35 cd05023 S-100A11 S-100A11: S-1 43.5 1.4E+02 0.003 23.1 7.1 76 374-450 3-83 (89)
36 COG5023 Tubulin [Cytoskeleton] 37.8 4.3E+02 0.0093 26.6 10.7 151 325-484 139-315 (443)
37 PRK11032 hypothetical protein; 32.7 80 0.0017 27.6 4.5 37 374-413 25-61 (160)
38 PF05193 Peptidase_M16_C: Pept 30.4 3.4E+02 0.0073 23.0 10.2 94 89-187 69-169 (184)
39 cd08779 Death_PIDD Death Domai 28.6 2.7E+02 0.0058 21.4 6.5 73 380-460 10-85 (86)
40 PF05120 GvpG: Gas vesicle pro 27.1 2.1E+02 0.0045 21.8 5.3 32 382-413 36-67 (79)
41 PF08756 YfkB: YfkB-like domai 23.6 1.6E+02 0.0036 24.9 4.5 41 437-477 2-44 (153)
42 PF11180 DUF2968: Protein of u 23.3 2.7E+02 0.0058 25.1 6.1 76 339-415 41-125 (192)
43 COG0012 Predicted GTPase, prob 22.9 6.8E+02 0.015 25.2 9.5 42 329-374 83-124 (372)
44 PF14659 Phage_int_SAM_3: Phag 22.4 71 0.0015 21.8 2.1 17 445-461 42-58 (58)
45 COG0593 DnaA ATPase involved i 21.4 8.9E+02 0.019 24.8 10.7 119 364-488 235-361 (408)
46 PF04558 tRNA_synt_1c_R1: Glut 21.0 5.2E+02 0.011 22.6 7.6 64 398-462 44-131 (164)
47 PF07295 DUF1451: Protein of u 20.7 2.7E+02 0.0058 24.0 5.5 42 372-416 13-54 (146)
48 cd04934 ACT_AK-Hom3_1 CT domai 20.6 2.9E+02 0.0063 20.3 5.1 47 138-185 19-66 (73)
49 cd08315 Death_TRAILR_DR4_DR5 D 20.6 4.3E+02 0.0093 20.8 7.1 63 392-462 29-91 (96)
50 cd04890 ACT_AK-like_1 ACT doma 20.6 2.6E+02 0.0056 19.3 4.8 44 138-182 18-61 (62)
51 PF00531 Death: Death domain; 20.5 3.6E+02 0.0077 19.8 7.8 60 393-461 23-83 (83)
52 TIGR00362 DnaA chromosomal rep 20.1 6.3E+02 0.014 25.6 9.3 116 366-487 261-385 (405)
No 1
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-89 Score=640.15 Aligned_cols=425 Identities=48% Similarity=0.745 Sum_probs=395.3
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCceEEEEcCCCcEEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCC
Q 011279 56 SLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR 135 (489)
Q Consensus 56 ~~~~plp~~~~p~~~~~~~~~~~~~~~~L~NGl~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~ 135 (489)
|+.+++| |++..+. ++.++++++|+||+||++++++++.++++++|++|++||.+...|++||+|+|+|++|.++
T Consensus 7 ~l~e~lP----p~~~~d~-~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~ 81 (472)
T KOG2067|consen 7 PLIEVLP----PKSTADP-EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERF 81 (472)
T ss_pred ccccCCC----CcccCCc-ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCC
Confidence 5555554 3323344 6679999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHcCCeeeEeeccceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHH
Q 011279 136 SHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLL 194 (489)
Q Consensus 136 s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~ 194 (489)
+..++.++||.+||+++|+++||++.|.+++.+++++.|+ ..|+.|++....+|+.++.
T Consensus 82 ~~~ei~~~LE~~GGn~~cqsSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~ 161 (472)
T KOG2067|consen 82 SSKEILAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLT 161 (472)
T ss_pred cHHHHHHHHHHhCCcccccccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHH
Confidence 9999999999999999999999999999999999999888 4556677788899999999
Q ss_pred HHHHHHhc-CCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEecCCHHHHHHHHHHhhCCCCCCCCC--CCCC
Q 011279 195 EAIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR--EEPK 271 (489)
Q Consensus 195 ~~l~~~~~-~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivGvd~~~l~~~i~~~~~~lp~~~~~--~~~~ 271 (489)
+++|+++| +++++.|.+|+.+.+++|+.+.|++|.+++|+|+||+++.|||+||++++.+++||++||+...+ ..++
T Consensus 162 e~iH~Aay~~ntlg~pl~cp~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~ 241 (472)
T KOG2067|consen 162 EMIHSAAYSGNTLGLPLLCPEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESK 241 (472)
T ss_pred HHHHHHHhccCcccccccCChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccch
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999985443 3456
Q ss_pred CCcCCCceEEecCC-----CCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCC
Q 011279 272 SVYTGGDYRCQADS-----GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFP 346 (489)
Q Consensus 272 ~~~~~~~~~~~~~~-----~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g 346 (489)
.+|+||...+..|. ....+||.++|++++ ++++|+++++|||.+|||||||||||||||||||||.+|.++++
T Consensus 242 aQYtGG~~~~~~d~~~~~~g~EltHv~lg~Eg~~--~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~ 319 (472)
T KOG2067|consen 242 AQYTGGELKIDTDAPQVTGGPELTHVVLGFEGCS--WNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYH 319 (472)
T ss_pred hhccccccccCCCCccccCccceeeeeEeeccCC--CCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhH
Confidence 79999976665432 127899999999997 58889999999999999999999999999999999999999999
Q ss_pred CEEEEEEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 011279 347 QVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIG 426 (489)
Q Consensus 347 ~~y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~ 426 (489)
|+|+|.||++.|.|+|+|+|+++++|+++.++++.+.+|+..+.. | ++++||+|||+++++.++||+|++...+++++
T Consensus 320 wv~sctAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~-~-v~~~el~RAK~qlkS~LlMNLESR~V~~EDvG 397 (472)
T KOG2067|consen 320 WVYSCTAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAG-G-VTQEELERAKTQLKSMLLMNLESRPVAFEDVG 397 (472)
T ss_pred HHHHhhhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHhcccccchhHHHHh
Confidence 999999999999999999999999999999999999999999976 4 99999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHhcCCHHHHHHHHHHhccCCceEEEEcCCCCCCCHHHHHHHhhcC
Q 011279 427 RQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK 489 (489)
Q Consensus 427 ~~~~~~g~~~~~~~~~~~i~~vT~edI~~~a~~~l~~~~~~~v~G~~~~lp~~~~~~~~~~~~ 489 (489)
||++.+|.+++++++++.|+++|++||.++++++|..+++++..||..++|+|+.+.+++++|
T Consensus 398 RQVL~~g~rk~p~e~~~~Ie~lt~~DI~rva~kvlt~~p~va~~Gd~~~lpt~~~i~~~~~~~ 460 (472)
T KOG2067|consen 398 RQVLTTGERKPPDEFIKKIEQLTPSDISRVASKVLTGKPSVAAFGDGTGLPTYDHIGNAVSSG 460 (472)
T ss_pred HHHHhccCcCCHHHHHHHHHhcCHHHHHHHHHHHhcCCceeccCCcccCCcchhhhhhhcccC
Confidence 999999999999999999999999999999999999999999999999999999999998764
No 2
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-66 Score=487.68 Aligned_cols=403 Identities=32% Similarity=0.578 Sum_probs=377.5
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEeec
Q 011279 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (489)
Q Consensus 77 ~~~~~~~L~NGl~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (489)
|++++++|+||++|+.+++...+++++++|++||++|++++.|.+||+|||+|+||++++...+..+++.+|+.+|++++
T Consensus 32 P~t~vttL~NGlrVaTE~~~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytS 111 (467)
T KOG0960|consen 32 PETEVTTLPNGLRVATEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTS 111 (467)
T ss_pred CcceEEEcCCCcEEEeccCCCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhccccc
Confidence 57899999999999999997779999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCCCCCCh
Q 011279 157 REQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 214 (489)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~g~~ 214 (489)
||+|.|+++++++++++++ +.|+.|.++.+.+-+...++.+|.++| ++|+++++.|+.
T Consensus 112 ReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~ 191 (467)
T KOG0960|consen 112 REQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPS 191 (467)
T ss_pred ccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChh
Confidence 9999999999999999888 667778888888889999999999999 999999999999
Q ss_pred hhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCC---CCCC-CCCCcCCCceEEecCCCCCc
Q 011279 215 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH---PREE-PKSVYTGGDYRCQADSGDQL 289 (489)
Q Consensus 215 ~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~---~~~~-~~~~~~~~~~~~~~~~~~~~ 289 (489)
++|++|+.+||++|.+.||.++||+++.+| |+||++++++++||+.++... .++. +++.|.|.+++...|. .|.
T Consensus 192 enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~~~~~~~~FtgsEvR~rdd~-lP~ 270 (467)
T KOG0960|consen 192 ENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDDD-LPL 270 (467)
T ss_pred hhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCCCCCCCccccCceeeecCCC-Cch
Confidence 999999999999999999999999999999 999999999999999976432 2222 3467899999887662 399
Q ss_pred eEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEEE
Q 011279 290 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 369 (489)
Q Consensus 290 ~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~~ 369 (489)
+|++++.++.+ | .++|++++.|.+.|+|...-+-.||+--+ |+|-+.+-+. +++.++.+|+..|.|+|+|++|+.
T Consensus 271 a~~AiAVEG~~-w-~~pD~~~l~van~iiG~wdr~~g~g~~~~--s~La~~~~~~-~l~~sfqsFnt~YkDTGLwG~y~V 345 (467)
T KOG0960|consen 271 AHIAIAVEGVS-W-AHPDYFALMVANTIIGNWDRTEGGGRNLS--SRLAQKIQQD-QLCHSFQSFNTSYKDTGLWGIYFV 345 (467)
T ss_pred hheeeeEecCC-c-CCccHHHHHHHHHHhhhhhcccCCccCCc--cHHHHHHHHH-HHHHHHhhhhcccccccceeEEEE
Confidence 99999999996 4 99999999999999999999999999888 9999888876 779999999999999999999999
Q ss_pred e-CcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcC
Q 011279 370 T-GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGV 448 (489)
Q Consensus 370 ~-~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~~~i~~v 448 (489)
| ++..++.++..+.++..++.. .+|+.|++|||++++.++...++...-++++||++++.+|.+.++.+..++|++|
T Consensus 346 ~~~~~~iddl~~~vl~eW~rL~~--~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grri~l~El~~rId~v 423 (467)
T KOG0960|consen 346 TDNLTMIDDLIHSVLKEWMRLAT--SVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRRIPLAELEARIDAV 423 (467)
T ss_pred ecChhhHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCcCChHHHHHHHhhc
Confidence 9 899999999999999999987 4999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcc-CCceEEEEcCCCCCCCHHHHHHHhh
Q 011279 449 TAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFK 487 (489)
Q Consensus 449 T~edI~~~a~~~l~-~~~~~~v~G~~~~lp~~~~~~~~~~ 487 (489)
|.+||+++|.+|+- +.+.++.+|+...+|+|..|+..|.
T Consensus 424 t~~~Vr~va~k~iyd~~iAia~vG~ie~lpdy~~irs~m~ 463 (467)
T KOG0960|consen 424 TAKDVREVASKYIYDKDIAIAAVGPIEGLPDYNRIRSGMS 463 (467)
T ss_pred cHHHHHHHHHHHhhcCCcceeeecccccCchHHHHhccch
Confidence 99999999999998 8899999999999999999998874
No 3
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=1.1e-50 Score=418.26 Aligned_cols=390 Identities=28% Similarity=0.426 Sum_probs=339.2
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEee
Q 011279 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 155 (489)
Q Consensus 77 ~~~~~~~L~NGl~V~~~~~~-~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 155 (489)
.+++.++|+||++++..+++ .+.+++++++++|+++|++...|+|||+|||+|+||.+++..++.+.++..|+..|++|
T Consensus 15 ~~~~~~~L~nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~t 94 (438)
T COG0612 15 PGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFT 94 (438)
T ss_pred ccceEEEcCCCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccc
Confidence 35899999999999987777 68999999999999999999999999999999999999888899999999999999999
Q ss_pred ccceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCCCCCC
Q 011279 156 SREQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAP 213 (489)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~g~ 213 (489)
++|.+.|.+++++++++.++ ..+.+|++...++|..+..+.++..+| ++||+++++|+
T Consensus 95 s~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~ 174 (438)
T COG0612 95 SFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGT 174 (438)
T ss_pred cchhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCC
Confidence 99999999999899998888 778889999999999999999999999 99999999999
Q ss_pred hhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCC-CCCCCCCCCCcCCC-ce-EEec--CCCC
Q 011279 214 ESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPS-IHPREEPKSVYTGG-DY-RCQA--DSGD 287 (489)
Q Consensus 214 ~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~-~~~~~~~~~~~~~~-~~-~~~~--~~~~ 287 (489)
.++|.+++.++|++||++||+|+||+|++|| |+++++..+++++|+.|+. .+.......++.++ .. .+.. ....
T Consensus 175 ~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (438)
T COG0612 175 EESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDL 254 (438)
T ss_pred HHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCccCCCCCCCCccccCCCceEEecCCCCchh
Confidence 9999999999999999999999999999999 9999999999999999997 22222222223323 22 2221 1223
Q ss_pred CceEEEEEeecCCCCCCCc-chHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEE
Q 011279 288 QLTHFVLAFELPGGWHKDK-DAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 366 (489)
Q Consensus 288 ~~~~v~l~~~~~~~~~~~~-~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i 366 (489)
.++++.++++.+. ...+ ++.++.+++.++|++ ++||||+++|++.|++|+++++...+.+.|.+.+
T Consensus 255 ~~~~~~~g~~~~~--~~~~~~~~~~~l~~~llgg~-----------~~SrLf~~~re~~glay~~~~~~~~~~~~~~~~~ 321 (438)
T COG0612 255 EQAWLALGYPGPD--YDSPDDYAALLLLNGLLGGG-----------FSSRLFQELREKRGLAYSVSSFSDFLSDSGLFSI 321 (438)
T ss_pred hhhhhhccccCcC--cCcchhhHHHHHHHHHhCCC-----------cchHHHHHHHHhcCceeeeccccccccccCCceE
Confidence 6888999999886 4444 788999999999876 4599999999999999999998888888999999
Q ss_pred EEEeCcccHHHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011279 367 QGTTGSDFVSKAIDLAARELISVATP--GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKT 444 (489)
Q Consensus 367 ~~~~~p~~~~~~i~~~~~el~~l~~~--g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~~~ 444 (489)
++.+.+.+.+++.+.+.+++..+.+. +.+++++++++|..+...+....+++...++.++......+...+.+++.+.
T Consensus 322 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (438)
T COG0612 322 YAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLITLEELLER 401 (438)
T ss_pred EEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCccCHHHHHHH
Confidence 99998776666666666666555543 2389999999999999999999999999999999888755777899999999
Q ss_pred HhcCCHHHHHHHHHHhcc-CCceEEEEcCCCCCCCH
Q 011279 445 VEGVTAKDIASVAQKLLS-SPLTMASYGDVINVPSY 479 (489)
Q Consensus 445 i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~~lp~~ 479 (489)
|++||++||+++|++++. .+.+++++||....+.+
T Consensus 402 i~~vt~~dv~~~a~~~~~~~~~~~~~~~p~~~~~~~ 437 (438)
T COG0612 402 IEAVTLEDVNAVAKKLLAPENLTIVVLGPEKALKDL 437 (438)
T ss_pred HHhcCHHHHHHHHHHhcCCCCcEEEEEccccccccC
Confidence 999999999999999999 66999999999876543
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=1.7e-41 Score=357.61 Aligned_cols=306 Identities=18% Similarity=0.184 Sum_probs=260.8
Q ss_pred EEEcCCCcEEEEecCC-CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChH-HHHHHHHHcCCeeeEeeccc
Q 011279 81 ISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHL-RIVREVEAIGGNVQASASRE 158 (489)
Q Consensus 81 ~~~L~NGl~V~~~~~~-~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~-~l~~~l~~~g~~~~~~~~~~ 158 (489)
.++|+||++|++.+.+ .+.+++.++|++||++|+++..|++||+|||+|+||++++.. ++.+.++.+|+.+|++|+.|
T Consensus 2 ~~tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d 81 (696)
T TIGR02110 2 RITLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLER 81 (696)
T ss_pred eEEcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCC
Confidence 4789999999975555 589999999999999999999999999999999999999985 79999999999999999999
Q ss_pred eEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCCCCCChhh
Q 011279 159 QMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESA 216 (489)
Q Consensus 159 ~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~g~~~~ 216 (489)
+|.|++++++++++.+| +++++|++...++|.....+.+.+.+| +|||+++.+|+.++
T Consensus 82 ~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~es 161 (696)
T TIGR02110 82 TTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDS 161 (696)
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 99999999999999888 667788888889999999999999999 99999999999999
Q ss_pred hccCC---HHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCCC--CCCcCCCceEEe-cCCCCCc
Q 011279 217 INRLN---STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTGGDYRCQ-ADSGDQL 289 (489)
Q Consensus 217 l~~i~---~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~~--~~~~~~~~~~~~-~~~~~~~ 289 (489)
|+.++ .++|++||++||.|+||+|+|+| +++++++++++++|+.|+.+..+... .+.+.++...+. .+. ++
T Consensus 162 L~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~q 239 (696)
T TIGR02110 162 LALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAPPAPLLRFDRLTLAGGSE--PR 239 (696)
T ss_pred HhCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCceeEEEecCc--ce
Confidence 99876 99999999999999999999999 99999999999999999866543221 122223322222 233 66
Q ss_pred eEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcc--eEEEE
Q 011279 290 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSG--MFGIQ 367 (489)
Q Consensus 290 ~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g--~~~i~ 367 (489)
.++.+.+++++ ..+++ ++.+++.+|+++.+ |+|+.+||+ +|++|++.+.. .+.+.| .|.|+
T Consensus 240 ~~l~~~~p~~~--~~d~~--al~lL~~iLg~g~s-----------SrL~~~LRe-~GLaysV~s~~-~~~~~g~~lf~I~ 302 (696)
T TIGR02110 240 LWLLFALAGLP--ATARD--NVTLLCEFLQDEAP-----------GGLLAQLRE-RGLAESVAATW-LYQDAGQALLALE 302 (696)
T ss_pred EEEEEeecCCC--CCChH--HHHHHHHHhCCCcc-----------hHHHHHHHH-CCCEEEEEEec-cccCCCCcEEEEE
Confidence 66666666543 44433 58999999998744 999999997 79999999865 455555 89999
Q ss_pred EEe---CcccHHHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 011279 368 GTT---GSDFVSKAIDLAARELISVATP--GEVDQVQLDRAKQS 406 (489)
Q Consensus 368 ~~~---~p~~~~~~i~~~~~el~~l~~~--g~it~~eL~~aK~~ 406 (489)
+.+ .+++.+++++.+.++|.+++++ + ++.+|++++|+.
T Consensus 303 ~~lt~~~~~~~~~v~~~i~~~L~~L~~~~~~-~~~eel~rlk~~ 345 (696)
T TIGR02110 303 FSARCISAAAAQQIEQLLTQWLGALAEQTWA-EQLEHYAQLAQR 345 (696)
T ss_pred EEEcCCCccCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHh
Confidence 997 3568999999999999999887 5 999999999987
No 5
>PRK15101 protease3; Provisional
Probab=100.00 E-value=1.3e-40 Score=375.06 Aligned_cols=381 Identities=13% Similarity=0.119 Sum_probs=308.0
Q ss_pred CCCceEEEEcCCCcEEEEe-cCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCC-hHHHHHHHHHcCCeee
Q 011279 75 EPGKTKISTLPNGVKIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQ 152 (489)
Q Consensus 75 ~~~~~~~~~L~NGl~V~~~-~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s-~~~l~~~l~~~g~~~~ 152 (489)
+...++.++|+||++|++. +...+.+.+.+++++|+.+|+++..|+|||+|||+|+||++++ ..++.+.++.+||.+|
T Consensus 40 d~~~~~~~~L~NGL~v~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~N 119 (961)
T PRK15101 40 DPRQYQAIRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHN 119 (961)
T ss_pred CccceEEEEeCCCCEEEEEeCCCCcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCcc
Confidence 3457888999999999964 4456899999999999999999999999999999999999996 5789999999999999
Q ss_pred EeeccceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCCC
Q 011279 153 ASASREQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 210 (489)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 210 (489)
++|+.++|.|++++++++++.+| .+|.+|++...++|..++.+.+.+.+| +|||+++.
T Consensus 120 A~T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~ 199 (961)
T PRK15101 120 ASTASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFS 199 (961)
T ss_pred ceECCCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCC
Confidence 99999999999999999999888 678888888888899999999999999 99999999
Q ss_pred CCChhhhccC----CHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCC--CCCCcC---CCceE
Q 011279 211 LAPESAINRL----NSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--PKSVYT---GGDYR 280 (489)
Q Consensus 211 ~g~~~~l~~i----~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~--~~~~~~---~~~~~ 280 (489)
.|+.++|+.+ +.++|++||++||.|+||+|+|+| ++++++.++++++|+.||....+.. ..+.+. .+...
T Consensus 200 ~G~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (961)
T PRK15101 200 GGNLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITVPVVTDAQKGIII 279 (961)
T ss_pred CCCHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHcCeEE
Confidence 9999999998 699999999999999999999999 9999999999999999987643211 112221 12221
Q ss_pred -EecCCCCCceEEEEEeecCCCCCC-CcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeeccc
Q 011279 281 -CQADSGDQLTHFVLAFELPGGWHK-DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIY 358 (489)
Q Consensus 281 -~~~~~~~~~~~v~l~~~~~~~~~~-~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~ 358 (489)
..... ++..+.+.|..|+ .. ..+.....++..+|+++++ +.|+..| ++.||+|+++++...+
T Consensus 280 ~~~~~~--~~~~l~l~~~~p~--~~~~~~~~~~~~l~~ll~~~~~-----------g~l~~~L-~~~gla~~v~s~~~~~ 343 (961)
T PRK15101 280 HYVPAQ--PRKVLRVEFRIDN--NSAKFRSKTDEYISYLIGNRSP-----------GTLSDWL-QKQGLAEGISAGADPM 343 (961)
T ss_pred EEEECC--CCcEEEEEEecCC--cHHHHhhCHHHHHHHHhcCCCC-----------CcHHHHH-HHcCccceeeeccccc
Confidence 12233 6788899999885 22 2223356789999987643 5566666 4789999999876533
Q ss_pred --CCcceEEEEEEeCcc---cHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHc
Q 011279 359 --NHSGMFGIQGTTGSD---FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM-NLESRMVVSEDIGRQVLTY 432 (489)
Q Consensus 359 --~~~g~~~i~~~~~p~---~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~-~~es~~~~~~~i~~~~~~~ 432 (489)
.+.|.|.|++.+.|+ +.+++++.+.++|..+++.| ++++||+++|+.+...+.. ...++....+.++..+. .
T Consensus 344 ~~~~~g~f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g-~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 421 (961)
T PRK15101 344 VDRNSGVFAISVSLTDKGLAQRDQVVAAIFSYLNLLREKG-IDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTML-R 421 (961)
T ss_pred cCCCceEEEEEEEcChHHHHhHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHhh-h
Confidence 467899999999885 78999999999999999988 9999999999998877644 23344445566665542 2
Q ss_pred CCCCCHHHHHHHHhcCCHHHHHHHHHHhcc-CCceEEEEcCCC
Q 011279 433 GERKPVEHFLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 433 g~~~~~~~~~~~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~ 474 (489)
............++++++++|+++++. |. ++..++++++..
T Consensus 422 ~~~~~~l~~~~~~~~~~~~~i~~~~~~-l~~~n~~i~~~~~~~ 463 (961)
T PRK15101 422 VPVEHTLDAPYIADRYDPKAIKARLAE-MTPQNARIWYISPQE 463 (961)
T ss_pred CCHHHheeCchhhhcCCHHHHHHHHhh-cCHhHEEEEEEeCCC
Confidence 222233345578899999999999988 56 888888888753
No 6
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=100.00 E-value=5.7e-36 Score=282.84 Aligned_cols=387 Identities=28% Similarity=0.410 Sum_probs=309.5
Q ss_pred ceEEEEcCCCcEEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEeecc
Q 011279 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (489)
Q Consensus 78 ~~~~~~L~NGl~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (489)
.....+|.||++|...+.+++..++.+.|++||+||+..+.|++|+++...++.|.+++...|.+..+..||.++..++|
T Consensus 22 ~~~~~kl~ngL~Vas~e~~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tR 101 (429)
T KOG2583|consen 22 ISKTTKLVNGLTVASREAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATR 101 (429)
T ss_pred hhhhhccccceEEEeccCCCcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeec
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEccCCCHHHHH------------------HHHHHHHH--hhcCChhHHHHHHHHHHhcCCCCCCCCCCChhhh
Q 011279 158 EQMGYSFDALKTYVPEML------------------TKVKSEIS--EVSNNPQSLLLEAIHSAGYSGALANPLLAPESAI 217 (489)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l------------------~~v~~el~--~~~~~p~~~~~~~l~~~~~~~~~~~~~~g~~~~l 217 (489)
|.+.|++++++++++..+ +.+...+. -...+|+....+.+|+++|.+.+|++++++.-.+
T Consensus 102 e~~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l~~~t~~~~a~e~lH~aAfRngLgnslY~p~~~v 181 (429)
T KOG2583|consen 102 ELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADLAYQTPYTIAIEQLHAAAFRNGLGNSLYSPGYQV 181 (429)
T ss_pred ceEEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHhhhcChHHHHHHHHHHHHHhcccCCcccCCcccc
Confidence 999999999999999877 11211111 1247899999999999999449999999988899
Q ss_pred ccCCHHHHHHHHHhhCCCCCeEEEEecCCHHHHHHHHHHhhCCCCCCCCCCCCCCCcCCCceEEecCCCCCceEEEEEee
Q 011279 218 NRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFE 297 (489)
Q Consensus 218 ~~i~~~~l~~f~~~~y~~~~~~l~ivGvd~~~l~~~i~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~ 297 (489)
.+++.++|.+|.+++|+.+|++++.+|+||+.++..+++++ .++........+..|.||+.+..... ...|+.++-+
T Consensus 182 g~vss~eL~~Fa~k~fv~gn~~lvg~nvd~~~L~~~~~~~~-~~~~~~~~k~a~a~~~gGe~Rk~~~g--~~~~v~vage 258 (429)
T KOG2583|consen 182 GSVSSSELKDFAAKHFVKGNAVLVGVNVDHDDLKQFADEYA-PIRDGLPLKPAPAKYSGGEARKDARG--NRVHVAVAGE 258 (429)
T ss_pred cCccHHHHHHHHHHHhhccceEEEecCCChHHHHHHHHHhc-cccCCCCCCCCCccccCCccccccCC--ceeEEEEecC
Confidence 99999999999999999999999999999999999999993 33333333333457889988776655 6778777755
Q ss_pred cCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHh-CCCEEEEEEeecccCCcceEEEEEEeCcccHH
Q 011279 298 LPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNE-FPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVS 376 (489)
Q Consensus 298 ~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~-~g~~y~~~a~~~~~~~~g~~~i~~~~~p~~~~ 376 (489)
+-. .-+.+...+..++.+.|+....- --|- +-+ -++-.. .+..-+++|++.+|.|.|+|++++..+..++.
T Consensus 259 gAA-a~~~k~~~a~av~~~~Lg~~~~~---k~~t---~~~-~~aa~~a~~~~~s~sA~~a~ysDsGL~gv~~~~~~~~a~ 330 (429)
T KOG2583|consen 259 GAA-AGNLKVLAAQAVLLAALGNSAPV---KRGT---GLL-SEAAGAAGEQGASASAFNAPYSDSGLFGVYVSAQGSQAG 330 (429)
T ss_pred ccc-ccchHHHHHHHHHHHHHhccccc---cccc---chH-HHHHhhccccCceeeeecccccCCceEEEEEEecCccHH
Confidence 553 22567888889999999865310 0011 222 222222 22345677899999999999999999888899
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCHHHHHHH
Q 011279 377 KAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASV 456 (489)
Q Consensus 377 ~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~~~i~~vT~edI~~~ 456 (489)
+++....+.++..+..+ ++......+++.++....+..+. +.... ... .+......++++.|++||..||.++
T Consensus 331 ~~v~s~v~~lks~~~~~-id~~~~~a~~~~l~~~~~ss~~a---~~~~~--~~~-a~~~~~~d~~i~~id~Vt~sdV~~a 403 (429)
T KOG2583|consen 331 KVVSSEVKKLKSALVSD-IDNAKVKAAIKALKASYLSSVEA---LELAT--GSQ-ANLVSEPDAFIQQIDKVTASDVQKA 403 (429)
T ss_pred HHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhhcchHH---HHHhh--HHH-hcCCCChHHHHHHhccccHHHHHHH
Confidence 99999999998887765 77777777777666665554433 22222 222 2222367899999999999999999
Q ss_pred HHHhccCCceEEEEcCCCCCCCHHHH
Q 011279 457 AQKLLSSPLTMASYGDVINVPSYDAV 482 (489)
Q Consensus 457 a~~~l~~~~~~~v~G~~~~lp~~~~~ 482 (489)
+++++..++.++.+|+...+|.+|++
T Consensus 404 ~kk~~s~kls~aA~Gnl~~vPY~DEL 429 (429)
T KOG2583|consen 404 AKKFLSGKLSLAAYGNLSNVPYLDEL 429 (429)
T ss_pred HHHhccCcceeeeeccccCCcccccC
Confidence 99999999999999999999999874
No 7
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=1.3e-32 Score=307.74 Aligned_cols=369 Identities=15% Similarity=0.124 Sum_probs=280.5
Q ss_pred CceEEEEcCCCcEEEEecCCC---CeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcC--Cee
Q 011279 77 GKTKISTLPNGVKIASETSVS---PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIG--GNV 151 (489)
Q Consensus 77 ~~~~~~~L~NGl~V~~~~~~~---~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g--~~~ 151 (489)
..+.....+||++|++..++. +.+.+.+++++|+ ....|++|++|||+|+||++++..++...++..| +.+
T Consensus 90 ~~~~~~H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~----~d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~l 165 (1119)
T PTZ00432 90 VATVYSHKKTGLQVISLKTNDSSGKEMCFDFYVPTPP----HNDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFL 165 (1119)
T ss_pred EEEEEEEcCCCCEEEEEecCCCccceeEEEEEecCCC----CCCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCc
Confidence 345666788999999655544 4789999999997 3467999999999999999999999999998866 779
Q ss_pred eEeeccceEEEEEEccCC-CHHHHH---------------H-------------------------------------HH
Q 011279 152 QASASREQMGYSFDALKT-YVPEML---------------T-------------------------------------KV 178 (489)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~-~l~~~l---------------~-------------------------------------~v 178 (489)
||+|+.|+|.|.+++.++ ++..++ . +|
T Consensus 166 NA~T~~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV 245 (1119)
T PTZ00432 166 NAYTFKDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIV 245 (1119)
T ss_pred cccCCCCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHH
Confidence 999999999999999875 576666 1 16
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHh
Q 011279 179 KSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPL 257 (489)
Q Consensus 179 ~~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~ 257 (489)
.+|++...++|..++.+.+.+.+|+|||+++..|++++|..++.+++++||++||+|+||+|+++| ++++++.++++++
T Consensus 246 ~~Emk~~~~~p~~~~~~~~~~~lf~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~ 325 (1119)
T PTZ00432 246 YSEMKKRFSDPLSFGYSVIYQNLFSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNY 325 (1119)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHH
Confidence 678888889999999999998888999999999999999999999999999999999999999999 9999999999999
Q ss_pred hCCCCCCCCC--------CCC-CC--CcCCCceEEe--c-CCCCCceEEEEE-eecCCCC----------CCCcchHHHH
Q 011279 258 LSDLPSIHPR--------EEP-KS--VYTGGDYRCQ--A-DSGDQLTHFVLA-FELPGGW----------HKDKDAMTLT 312 (489)
Q Consensus 258 ~~~lp~~~~~--------~~~-~~--~~~~~~~~~~--~-~~~~~~~~v~l~-~~~~~~~----------~~~~~~~~l~ 312 (489)
|+.+|..... ... .+ .+..+..++. . ..+..+.++.++ |..++.. .+.++..++.
T Consensus 326 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~ 405 (1119)
T PTZ00432 326 LTKHPKTGQLSHTAYREDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALL 405 (1119)
T ss_pred HhhcccccccccccccccccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHH
Confidence 9888754211 001 11 1111222221 1 111245666665 9874211 1235789999
Q ss_pred HHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEE-EeecccCCcceEEEEEE-eCc-------ccHHHHHHHHH
Q 011279 313 VLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFS-AFSNIYNHSGMFGIQGT-TGS-------DFVSKAIDLAA 383 (489)
Q Consensus 313 vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~-a~~~~~~~~g~~~i~~~-~~p-------~~~~~~i~~~~ 383 (489)
||+.+|+++++ |+|++.||+ .|++|++. +......+.+.|.|++. +++ ++++++.+.+.
T Consensus 406 VLs~lLggg~s-----------S~L~q~LrE-~GLa~svv~~~~~~~~~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I~ 473 (1119)
T PTZ00432 406 VLNYLLLGTPE-----------SVLYKALID-SGLGKKVVGSGLDDYFKQSIFSIGLKGIKETNEKRKDKVHYTFEKVVL 473 (1119)
T ss_pred HHHHHHcCCCc-----------cHHHHHHHh-cCCCcCCCcCcccCCCCceEEEEEEEcCChHhccchhhhHHHHHHHHH
Confidence 99999998765 999999996 69999964 34455567788988876 442 34778999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHcCCCCC---HHHHHHHHhc-C--CHHHH
Q 011279 384 RELISVATPGEVDQVQLDRAKQSTKSAILMNLES----RMVVSEDIGRQVLTYGERKP---VEHFLKTVEG-V--TAKDI 453 (489)
Q Consensus 384 ~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es----~~~~~~~i~~~~~~~g~~~~---~~~~~~~i~~-v--T~edI 453 (489)
++|.+++++| +++++|+++++++...+...... .-..+..+...+++++++.. .+..++.++. + +.+-+
T Consensus 474 ~~L~~l~~eG-i~~eele~a~~qlef~~rE~~~~~~p~gl~~~~~~~~~~~~g~dp~~~l~~~~~l~~lr~~~~~~~~y~ 552 (1119)
T PTZ00432 474 NALTKVVTEG-FNKSAVEASLNNIEFVMKELNLGTYPKGLMLIFLMQSRLQYGKDPFEILRFEKLLNELKLRIDNESKYL 552 (1119)
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHhcCCCHHHHHhhHHHHHHHHHHHhcccHHH
Confidence 9999999988 99999999999988877654221 23455666667764444322 2333333331 1 33568
Q ss_pred HHHHHHhcc
Q 011279 454 ASVAQKLLS 462 (489)
Q Consensus 454 ~~~a~~~l~ 462 (489)
.+++++||-
T Consensus 553 e~Li~k~ll 561 (1119)
T PTZ00432 553 EKLIEKHLL 561 (1119)
T ss_pred HHHHHHHcc
Confidence 999999997
No 8
>PRK15101 protease3; Provisional
Probab=99.97 E-value=5.3e-29 Score=280.87 Aligned_cols=370 Identities=10% Similarity=0.075 Sum_probs=279.4
Q ss_pred ceEEEEcCCCcEEEEecCC----CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeE
Q 011279 78 KTKISTLPNGVKIASETSV----SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQA 153 (489)
Q Consensus 78 ~~~~~~L~NGl~V~~~~~~----~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~ 153 (489)
.++.+.++||++|++.+.+ .|.+.+.+.+.+|...+++...|++.|+..|+ +.+..++....+..|..++.
T Consensus 522 ~p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll-----~~~l~e~~y~a~~aG~~~~~ 596 (961)
T PRK15101 522 HPELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALNDYLA-----GLALDQLSNQASVGGISFST 596 (961)
T ss_pred CCeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHH-----HHHHHHHhchHHhcCcEEEE
Confidence 4588899999999965443 58999999999999999999999999999887 34555666777888999998
Q ss_pred eeccceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHH-Hhc-CCCCCCCC
Q 011279 154 SASREQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHS-AGY-SGALANPL 210 (489)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~-~~~-~~~~~~~~ 210 (489)
. ..+.+.+++++++++++.++ +.+.+++++... ...+...+.. ..| .|||+.+
T Consensus 597 ~-~~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~py~~~- 672 (961)
T PRK15101 597 N-ANNGLMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDSAEK--GKAYEQAIMPAQMLSQVPYFER- 672 (961)
T ss_pred c-cCCCEEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcc--cCcHHHHHHHHHHHhcCCCCCH-
Confidence 8 79999999999999999888 233344443322 1222233332 345 8999865
Q ss_pred CCChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCC-CCC--CCcCCCceEEecCCC
Q 011279 211 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPRE-EPK--SVYTGGDYRCQADSG 286 (489)
Q Consensus 211 ~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~-~~~--~~~~~~~~~~~~~~~ 286 (489)
.++.+.|++++.+++++||+++|.+.+++++|+| ++.+++.++++++++.++..+... ... ....+....+.....
T Consensus 673 ~~~~~~l~~it~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (961)
T PRK15101 673 DERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGADGTEWWRGKDVVVDKKQSVNFEKAGS 752 (961)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccCCcccccccceEeCCCCeEEEecCCC
Confidence 5688999999999999999999999999999999 999999999999988886532211 110 111122222222222
Q ss_pred CCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEE
Q 011279 287 DQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 366 (489)
Q Consensus 287 ~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i 366 (489)
..+..+.+.|..++ .+ .....+++.+|+++ |.+|||++||++.|++|+|+++.....+.+.+.+
T Consensus 753 ~~~~~~~~~~~~~g--~~---~~~~~v~~~lLg~~-----------~ssrlf~~LRtk~qLgY~V~s~~~~~~~~~~~~~ 816 (961)
T PRK15101 753 STDSALAAVYVPTG--YD---EYQSSAYSSLLGQI-----------IQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGF 816 (961)
T ss_pred CCCCeEEEEEEeCC--CC---CHHHHHHHHHHHHH-----------HhHHHHHHHHHHhhhceEEEEEeeccCCeeeEEE
Confidence 24566666665544 22 26677888888765 5599999999999999999998877766566666
Q ss_pred EEEe---CcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC-CCCCHHHHH
Q 011279 367 QGTT---GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYG-ERKPVEHFL 442 (489)
Q Consensus 367 ~~~~---~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g-~~~~~~~~~ 442 (489)
.+++ +|+.+.+.++.+.+++.+..+ + +|++||+++|++++.++....++....+..++..+..++ ..+..+++.
T Consensus 817 ~vqs~~~~~~~l~~~i~~f~~~~~~~l~-~-lt~eE~~~~k~~l~~~~~~~~~sl~~~a~~~~~~i~~~~~~fd~~~~~~ 894 (961)
T PRK15101 817 LLQSNDKQPAYLWQRYQAFFPQAEAKLR-A-MKPEEFAQYQQALINQLLQAPQTLGEEASRLSKDFDRGNMRFDSRDKII 894 (961)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCcChHHHHH
Confidence 6654 466777888888777644444 5 999999999999999999999999999999998886433 346779999
Q ss_pred HHHhcCCHHHHHHHHHHh-cc-CC--ceEEEEcCCC
Q 011279 443 KTVEGVTAKDIASVAQKL-LS-SP--LTMASYGDVI 474 (489)
Q Consensus 443 ~~i~~vT~edI~~~a~~~-l~-~~--~~~~v~G~~~ 474 (489)
+.|++||++||++++++| +. ++ .++.+.|...
T Consensus 895 ~~i~~vT~edv~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (961)
T PRK15101 895 AQIKLLTPQKLADFFHQAVIEPQGLAILSQISGSQN 930 (961)
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCEEEEEeeccCc
Confidence 999999999999999998 65 44 4455556544
No 9
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.5e-27 Score=245.73 Aligned_cols=382 Identities=19% Similarity=0.198 Sum_probs=289.2
Q ss_pred CCCCceEEEEcCCCcEEEE-ecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCCh-HHHHHHHHHcCCee
Q 011279 74 VEPGKTKISTLPNGVKIAS-ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH-LRIVREVEAIGGNV 151 (489)
Q Consensus 74 ~~~~~~~~~~L~NGl~V~~-~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~-~~l~~~l~~~g~~~ 151 (489)
.+...++..+|+||+++.+ .+...+.+...|.|++|+..+|.+..|+|||+|||+|.|+++++. ..+..+|+.+||..
T Consensus 19 ~d~r~y~~I~LpNGl~~LlisDP~a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~ 98 (937)
T COG1025 19 LDDRKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSH 98 (937)
T ss_pred ccCcceeEEECCCCceEEEecCCCCCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCcc
Confidence 4446899999999999985 455567999999999999999999999999999999999999764 56899999999999
Q ss_pred eEeeccceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCC
Q 011279 152 QASASREQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANP 209 (489)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~ 209 (489)
||+|..+.|.|.+++.++.++.+| .+|.+|......+...++++.....+- +||+.+.
T Consensus 99 NA~T~~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~srF 178 (937)
T COG1025 99 NASTAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKF 178 (937)
T ss_pred ccccCCCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCcccc
Confidence 999999999999999999999888 667777777777778888888777788 9999999
Q ss_pred CCCChhhhcc----CCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCCCC--CCcC----CCc
Q 011279 210 LLAPESAINR----LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVYT----GGD 278 (489)
Q Consensus 210 ~~g~~~~l~~----i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~~~--~~~~----~~~ 278 (489)
..|..++|.. ...++|.+||++||.+++|+++|.| -+.+++.+++.++|+.+|......... |++. +..
T Consensus 179 s~GN~~TL~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~p~p~~~d~~t~~i 258 (937)
T COG1025 179 STGNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTGKI 258 (937)
T ss_pred CCCChhhhccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCChHHhCce
Confidence 9999999988 5579999999999999999999999 999999999999999999765433222 3332 223
Q ss_pred eEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeeccc
Q 011279 279 YRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIY 358 (489)
Q Consensus 279 ~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~ 358 (489)
.++.... +...+.+.|+.+... ..-..-....+..++|..+. | |-+ ....+.||+-++.|+...+
T Consensus 259 i~i~p~~--~~~~L~i~f~i~~~~-~~~~~~~~~~~s~Lig~es~--------g--sL~--~~Lk~~Glit~l~a~~~~~ 323 (937)
T COG1025 259 IHIVPAK--PRPRLRIYFPIDDNS-AKFRSKPDEYLSHLIGNESP--------G--SLL--AWLKKQGLITELSAGLDPI 323 (937)
T ss_pred EEeccCC--CCceEEEEEEcCCcc-cccccCCHHHHHHHhccCCC--------c--hHH--HHHHhccchhhhccccccc
Confidence 3333333 677888999998622 22223467788889987643 2 222 3456789999999987766
Q ss_pred C-CcceEEEEEEeC---cccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC
Q 011279 359 N-HSGMFGIQGTTG---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE 434 (489)
Q Consensus 359 ~-~~g~~~i~~~~~---p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~ 434 (489)
. +.|.|.|...-. -.+.+++|..+.+.+.-+...| +....++...+-.-..+. +.+...-+....+... .-.
T Consensus 324 ~~n~~~f~is~~LT~~Gl~~~~~VI~~~F~yl~~l~~~~-~~~~~f~Elq~v~~l~f~--y~~~t~~~~~~~~l~~-~m~ 399 (937)
T COG1025 324 SGNYGVFAISYELTDKGLAHYDRVIALTFQYLNLLREKG-IPKYTFDELQNVLDLDFR--YPSKTRPMDYVSWLAD-NME 399 (937)
T ss_pred cCCcceEEEEeehhhcchhhHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHhhhc--ccccCChHHHHHHHHH-hcc
Confidence 5 778888876543 4578999999999999999888 888887766554433333 3332222222222222 222
Q ss_pred CCCHHHH---HHHHhcCCHHHHHHHHHHhccCCceEEEEcCCC
Q 011279 435 RKPVEHF---LKTVEGVTAKDIASVAQKLLSSPLTMASYGDVI 474 (489)
Q Consensus 435 ~~~~~~~---~~~i~~vT~edI~~~a~~~l~~~~~~~v~G~~~ 474 (489)
+.+++.+ .-.+..-.+++|+.+..-+.-++..+...++..
T Consensus 400 ~~p~~~~~~~~~~~~~yd~~~~~~~l~~~~pen~R~~lis~~~ 442 (937)
T COG1025 400 REPVEHTLYASLVLPRYDPKAIQERLALMTPENARLWLISKLE 442 (937)
T ss_pred cCChhhhhchhhcccccCHHHHHHHHHhhCccceEEEEecCCC
Confidence 2344443 345667788999999877665666666666553
No 10
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.5e-26 Score=241.29 Aligned_cols=380 Identities=16% Similarity=0.145 Sum_probs=282.2
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCC-hHHHHHHHHHcCCeeeEe
Q 011279 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQAS 154 (489)
Q Consensus 77 ~~~~~~~L~NGl~V~~~~~~-~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s-~~~l~~~l~~~g~~~~~~ 154 (489)
-.....+|+||+++.+...+ .+.++..+.|++||..||.+..|+|||+|||+|.||.+++ .+++..++.++||..||+
T Consensus 26 r~yr~~~L~Ngl~alLisDp~tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~ 105 (974)
T KOG0959|consen 26 REYRGIELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAY 105 (974)
T ss_pred cceeEEEecCCceEEEecCCCCCccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccc
Confidence 47899999999999854445 4588999999999999999999999999999999999976 556788899999999999
Q ss_pred eccceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCCCCC
Q 011279 155 ASREQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLA 212 (489)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~g 212 (489)
|+.++|.|++.+..++++.+| .+|.+|.+...++...+..+......- +||+++...|
T Consensus 106 T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~tG 185 (974)
T KOG0959|consen 106 TDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFSTG 185 (974)
T ss_pred cccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhcccc
Confidence 999999999999999999888 557777777777788888887777777 9999999999
Q ss_pred ChhhhccCC-----HHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCCC--CCCc----CCCceE
Q 011279 213 PESAINRLN-----STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVY----TGGDYR 280 (489)
Q Consensus 213 ~~~~l~~i~-----~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~~--~~~~----~~~~~~ 280 (489)
..++|.... .+.|++||++||.+++|+++|+| .+.+.+..++.+.|+.+++...+.+. .+++ .++.++
T Consensus 186 N~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~~~p~~~e~~~~~~~ 265 (974)
T KOG0959|consen 186 NKKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPEPPFLPEELKKLVR 265 (974)
T ss_pred chhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCcccCCCCChHHhCcEEE
Confidence 999999999 99999999999999999999999 99999999999999999876654421 1222 233344
Q ss_pred EecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeec-ccC
Q 011279 281 CQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSN-IYN 359 (489)
Q Consensus 281 ~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~-~~~ 359 (489)
+..-. .-..+.+.|..|+. ...-+.-....+..++|..|. .-|...|+ +.||+-++.|+.. ...
T Consensus 266 v~pik--~~~~l~is~~~p~~-~~~y~~kP~~y~~hLigheg~-----------GSL~~~Lk-~~gw~~sl~a~~~~~as 330 (974)
T KOG0959|consen 266 VVPIK--DGRSLMISWPVPPL-NHHYKSKPLRYLSHLIGHEGP-----------GSLLSYLK-RLGWATSLEAGIPEFAS 330 (974)
T ss_pred EEecc--ccceEEEEEecCCc-ccccccCcHHHHHHHhccCCc-----------chHHHHHH-HhhchheeecCCCcccc
Confidence 44333 56778889999973 244445567788888887643 23444555 4699999999876 334
Q ss_pred CcceEEEEEEeC---cccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHcCCC
Q 011279 360 HSGMFGIQGTTG---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTK-SAILMNLESRMVVSEDIGRQVLTYGER 435 (489)
Q Consensus 360 ~~g~~~i~~~~~---p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~-~~~~~~~es~~~~~~~i~~~~~~~g~~ 435 (489)
+.+.|.|.+.-. -+++++++..+.+.+..+...| .-+.-++.....-. ....+..+.+...+..++.... +-..
T Consensus 331 ~~~~f~v~idLtd~G~e~~~~ii~~~f~yi~~l~~~~-~~~~i~~E~~~~~~~~Frf~~k~~p~~~~~~~~~nlq-~~P~ 408 (974)
T KOG0959|consen 331 GYSFFNVSIDLTDEGLEHVDEIIGLVFNYIKLLQSAG-PEKWIFKELQLISEVKFRFQDKEPPMEYASEIASNLQ-YYPV 408 (974)
T ss_pred ccceEEEEEEeccccchhHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHhhhhheeecccCCcHHHHHHHHhhcc-cCCh
Confidence 556776665543 4578999999999999887765 33322332221111 1112233355555666665543 2222
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHhccCCceEEEEcCC
Q 011279 436 KPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDV 473 (489)
Q Consensus 436 ~~~~~~~~~i~~vT~edI~~~a~~~l~~~~~~~v~G~~ 473 (489)
...-..-..+....++-|+.+...+-..+..+++++..
T Consensus 409 ~~il~~~~ll~~~~p~~i~~~~~~L~p~n~~v~~~s~~ 446 (974)
T KOG0959|consen 409 EDVLTGSYLLTEFDPDLIQEVLSSLVPSNMRVILVSRS 446 (974)
T ss_pred HHhhcchhhhhhcChHHHHHHHHhcCcccceeeeeeec
Confidence 22233345677888999999887765566666665544
No 11
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.91 E-value=4.3e-22 Score=209.98 Aligned_cols=381 Identities=13% Similarity=0.111 Sum_probs=274.8
Q ss_pred eEEEEcCCCcEEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCC--eeeEeec
Q 011279 79 TKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGG--NVQASAS 156 (489)
Q Consensus 79 ~~~~~L~NGl~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~--~~~~~~~ 156 (489)
+....-++|++++...++.+.....+.+.. ++....|++|.|||+.+.|+.+++-.+..-.+-+... -+||.|.
T Consensus 22 ~~~~H~~TGa~l~hi~~~d~~~vFsi~F~T----~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~ 97 (978)
T COG1026 22 YILEHEKTGAELAHIKNEDPNNVFSIAFKT----EPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTF 97 (978)
T ss_pred EEEeeccCCceEEEecCCCcCceEEEEeec----CCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccC
Confidence 333444599999976666665555555544 4566889999999999999999998886555554433 3899999
Q ss_pred cceEEEEEEccCC-CHHHHH-----------------------------------HHHHHHHHhhcCChhHHHHHHHHHH
Q 011279 157 REQMGYSFDALKT-YVPEML-----------------------------------TKVKSEISEVSNNPQSLLLEAIHSA 200 (489)
Q Consensus 157 ~~~~~~~~~~~~~-~l~~~l-----------------------------------~~v~~el~~~~~~p~~~~~~~l~~~ 200 (489)
.|.|.|.+++... ++-.++ .+|-+|++....++..++++.+.+.
T Consensus 98 ~D~T~YP~sS~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~s 177 (978)
T COG1026 98 PDKTVYPASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGESVLSRAMQQS 177 (978)
T ss_pred CCcceeeccccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchhHHHHHHHHh
Confidence 9999999998654 333333 4566777777889999999999999
Q ss_pred hc-CCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHh-hCCCCCCCCCCCCC--CCcC
Q 011279 201 GY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPL-LSDLPSIHPREEPK--SVYT 275 (489)
Q Consensus 201 ~~-~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~-~~~lp~~~~~~~~~--~~~~ 275 (489)
+| +..|+....|.++.|..++.+++++||+++|+|+|+.++++| ++.++.++.+++. |...+........+ ..+.
T Consensus 178 lfp~~ty~~~SGG~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~~~~~i~~~~~~~ 257 (978)
T COG1026 178 LFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAFK 257 (978)
T ss_pred hCCCccccccCCCCcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccccCCCCCcccccC
Confidence 99 999999888999999999999999999999999999999999 9999999999887 55544433111111 1111
Q ss_pred ---CCc--eEEe-cCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEE
Q 011279 276 ---GGD--YRCQ-ADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQ 349 (489)
Q Consensus 276 ---~~~--~~~~-~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y 349 (489)
... ..+. ...+..+..+.++|.++. ..+..+..++.||..+|-++.+ +.|.+.|.+..-..+
T Consensus 258 ~~~~~~~~ypi~~~~~de~q~~~~lsWl~~~-~~d~~~~lal~vL~~iLl~~~a-----------sPl~~~liesglg~~ 325 (978)
T COG1026 258 KPRRKVLEYPISFDEEDEDQGLLSLSWLGGS-ASDAEDSLALEVLEEILLDSAA-----------SPLTQALIESGLGFA 325 (978)
T ss_pred cccccceeeccCCCCCCCceeEEEEEEecCC-cccHHHHHHHHHHHHHHccCcc-----------cHHHHHHHHcCCCcc
Confidence 111 1121 123447889999999987 2356788999999999998877 999999998633224
Q ss_pred EEEEeecccCCcceEEEEEE-eCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChH--HHHHHHH
Q 011279 350 SFSAFSNIYNHSGMFGIQGT-TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRM--VVSEDIG 426 (489)
Q Consensus 350 ~~~a~~~~~~~~g~~~i~~~-~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~--~~~~~i~ 426 (489)
.++.++...-....|.+.+. +..+++++.-+.+...|+++..+| ++.+.++.++.++.-++......+. .++.++.
T Consensus 326 ~~~g~~~~~~~~~~f~v~~~gv~~ek~~~~k~lV~~~L~~l~~~g-i~~~~ie~~~~q~E~s~ke~~s~pfgl~l~~~~~ 404 (978)
T COG1026 326 DVSGSYDSDLKETIFSVGLKGVSEEKIAKLKNLVLSTLKELVKNG-IDKKLIEAILHQLEFSLKEVKSYPFGLGLMFRSL 404 (978)
T ss_pred cccceeccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhhhcCCCccHHHHHHhc
Confidence 43333333333456666555 456778888899999999999999 9999999999998877766533333 3345555
Q ss_pred HHHHHcCCCCC---HHHHHHHHhcCCHHH--HHHHHHHhcc-CC-ceEEEEcCCCCC
Q 011279 427 RQVLTYGERKP---VEHFLKTVEGVTAKD--IASVAQKLLS-SP-LTMASYGDVINV 476 (489)
Q Consensus 427 ~~~~~~g~~~~---~~~~~~~i~~vT~ed--I~~~a~~~l~-~~-~~~~v~G~~~~l 476 (489)
..++.++++.. ..++.+.|++=-.++ +.+++++||- ++ .+++++=|...+
T Consensus 405 ~gw~~G~dp~~~Lr~~~~~~~Lr~~le~~~~fe~LI~ky~l~N~h~~~v~~~Ps~~~ 461 (978)
T COG1026 405 YGWLNGGDPEDSLRFLDYLQNLREKLEKGPYFEKLIRKYFLDNPHYVTVIVLPSPEL 461 (978)
T ss_pred cccccCCChhhhhhhHHHHHHHHHhhhcChHHHHHHHHHhhcCCccEEEEEecChHH
Confidence 55655555432 344555555433344 9999999998 55 566666555443
No 12
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.89 E-value=2.8e-22 Score=181.13 Aligned_cols=173 Identities=26% Similarity=0.375 Sum_probs=144.8
Q ss_pred cCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCC---CCCC-CCC----CcCCCceEEe-cCCCCC
Q 011279 219 RLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH---PREE-PKS----VYTGGDYRCQ-ADSGDQ 288 (489)
Q Consensus 219 ~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~---~~~~-~~~----~~~~~~~~~~-~~~~~~ 288 (489)
+|+.++|++||++||+|+||+++++| ++++++.++++++|+.||... .... ... ...+...... .+. +
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 78 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKDE--S 78 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESSS--S
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccccc--c
Confidence 57999999999999999999999999 999999999999999998653 1111 111 1112222222 233 7
Q ss_pred ceEEEEEeecCCCCC-CCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEE
Q 011279 289 LTHFVLAFELPGGWH-KDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 367 (489)
Q Consensus 289 ~~~v~l~~~~~~~~~-~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~ 367 (489)
+..+.++|.+++ . +.++..++.++..+|+++ +.++|+..||++.+++|++.++...+.+.+.|.|+
T Consensus 79 ~~~v~~~~~~~~--~~~~~~~~~~~~l~~~l~~~-----------~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~ 145 (184)
T PF05193_consen 79 QSIVSIAFPGPP--IKDSKDYFALNLLSSLLGNG-----------MSSRLFQELREKQGLAYSVSASNSSYRDSGLFSIS 145 (184)
T ss_dssp SEEEEEEEEEEE--TGTSTTHHHHHHHHHHHHCS-----------TTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEE
T ss_pred cccccccccccc--ccccchhhHHHHHHHHHhcC-----------ccchhHHHHHhccccceEEEeeeeccccceEEEEE
Confidence 999999999997 4 788999999999999986 56999999999999999999997777788999999
Q ss_pred EEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011279 368 GTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQST 407 (489)
Q Consensus 368 ~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l 407 (489)
+.+.|++..++++.+.++++++++.| ++++||+++|++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~l~~l~~~~-~s~~el~~~k~~L 184 (184)
T PF05193_consen 146 FQVTPENLDEAIEAILQELKRLREGG-ISEEELERAKNQL 184 (184)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHHHHC-S-HHHHHHHHHHH
T ss_pred EEcCcccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHhcC
Confidence 99999999999999999999999987 9999999999975
No 13
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.1e-17 Score=167.88 Aligned_cols=372 Identities=15% Similarity=0.155 Sum_probs=254.9
Q ss_pred CCcEEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcC-CeeeEeeccceEEEEE
Q 011279 86 NGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIG-GNVQASASREQMGYSF 164 (489)
Q Consensus 86 NGl~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g-~~~~~~~~~~~~~~~~ 164 (489)
-|++|++.+++++.+.=.+.+.. |...+.|+.|-+||+.|.|+++++...+...+.... ++.||.|+.|+|.|+.
T Consensus 28 Tkl~va~~~~pts~vhG~f~v~T----Ea~~d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~dtNAwTDtD~T~YtL 103 (1022)
T KOG0961|consen 28 TKLRVAIGEVPTSMVHGAFSVVT----EADSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTL 103 (1022)
T ss_pred cceEEEEeecCCcceeeeEEeee----eecCCCCCchhHHHHhhhccccCCcccHHHHhhcchhcccccccccCcceEEe
Confidence 57888887777775443333332 334578999999999999999999998877666654 5799999999999999
Q ss_pred EccCC-CHHHHH-------------------------------HHHHHHHHhhcCChhHHHHHHHHHHhc--CCCCCCCC
Q 011279 165 DALKT-YVPEML-------------------------------TKVKSEISEVSNNPQSLLLEAIHSAGY--SGALANPL 210 (489)
Q Consensus 165 ~~~~~-~l~~~l-------------------------------~~v~~el~~~~~~p~~~~~~~l~~~~~--~~~~~~~~ 210 (489)
++.-. .+-.+| .+|-.|.+..+..-+..+.+...+..| .++|....
T Consensus 104 Stag~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eT 183 (1022)
T KOG0961|consen 104 STAGSDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVET 183 (1022)
T ss_pred ecccccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhhhhhheeecCCCCCceecc
Confidence 98653 333333 567777877777777788888888899 78898888
Q ss_pred CCChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCC--CCCCC-C------CcC---CC
Q 011279 211 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHP--REEPK-S------VYT---GG 277 (489)
Q Consensus 211 ~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~--~~~~~-~------~~~---~~ 277 (489)
.|-.+.|+.++.+.+++||++.|+++||++.++| |++++++...+..-..++.... |+..+ | .+. ..
T Consensus 184 GG~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~t 263 (1022)
T KOG0961|consen 184 GGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKEST 263 (1022)
T ss_pred CCChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCccc
Confidence 8999999999999999999999999999999999 9999999987765554432221 11111 1 111 11
Q ss_pred ceEEecC-CCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhC-CCEEEEEEee
Q 011279 278 DYRCQAD-SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEF-PQVQSFSAFS 355 (489)
Q Consensus 278 ~~~~~~~-~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~-g~~y~~~a~~ 355 (489)
..+++.+ .+..+..|.++|.+++ ..+.....++.||..+|....- +.+.+.+.+-. ..+-+++..
T Consensus 264 ~~tVefp~~Des~G~v~~aW~g~s-~sD~~t~~a~~vL~dyls~sav-----------apf~~~fVeieDP~assv~f~- 330 (1022)
T KOG0961|consen 264 VHTVEFPTDDESRGAVEVAWFGHS-PSDLETHSALHVLFDYLSNSAV-----------APFQKDFVEIEDPLASSVSFH- 330 (1022)
T ss_pred eeeeecCCcccccceEEEEEcCCC-HHHhhhHHHHHHHHHHhccccc-----------cccccceEEecCccccceeee-
Confidence 2334432 2336888999999987 2355777899999999987542 55655555432 334333332
Q ss_pred cccCCcceEEEEEE-eCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHH--HHHHHHHHHHHc
Q 011279 356 NIYNHSGMFGIQGT-TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMV--VSEDIGRQVLTY 432 (489)
Q Consensus 356 ~~~~~~g~~~i~~~-~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~--~~~~i~~~~~~~ 432 (489)
..+.-...+.+.+. .+-+++...-..+++.+.+-+ .|+-+.+.....+.+-+++.++|.+.. .+..+...++ +
T Consensus 331 ~~~~vrc~i~L~f~gVP~EKi~~~~~k~l~~l~et~---~iDm~Rm~~~i~~t~~~yL~nlE~n~~s~fms~ii~d~~-y 406 (1022)
T KOG0961|consen 331 IAEGVRCDIRLNFAGVPVEKIDECAPKFLDKLVETA---NIDMERMGYLIDQTILNYLVNLETNAPSDFMSHIIGDQL-Y 406 (1022)
T ss_pred eecccceeEEEeecCCcHHHhhhhhHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHhhhhh-c
Confidence 22322344555454 444666666666666654433 388888888888888888889887543 2333333333 3
Q ss_pred CCC--CC------HHHHHHHHhcCCHHHHHHHHHHhccCCceEEEEcCCCCCCCHHHH
Q 011279 433 GER--KP------VEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 482 (489)
Q Consensus 433 g~~--~~------~~~~~~~i~~vT~edI~~~a~~~l~~~~~~~v~G~~~~lp~~~~~ 482 (489)
|.. .. --++.+.+.+-..+|.+++.+|||.++..+.|. .+|+.+.+
T Consensus 407 gnedg~~l~~~lk~l~~~~~L~~w~~kdW~~Llnk~Fven~s~tVi----a~Ps~em~ 460 (1022)
T KOG0961|consen 407 GNEDGELLKKRLKELDFLKKLKSWPAKDWVQLLNKYFVENPSATVI----AVPSEEMV 460 (1022)
T ss_pred cCcchhHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhccCCCeEEE----ecCcHHHH
Confidence 332 11 134678888999999999999999944444443 34555443
No 14
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.5e-17 Score=163.76 Aligned_cols=382 Identities=14% Similarity=0.109 Sum_probs=265.2
Q ss_pred EEEEcCCCcEEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHH-HHHHHHHc-CCeeeEeecc
Q 011279 80 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR-IVREVEAI-GGNVQASASR 157 (489)
Q Consensus 80 ~~~~L~NGl~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~-l~~~l~~~-g~~~~~~~~~ 157 (489)
....=.-|.+++..++..+--.+++.++ ..++...|+.|.+||-...|+.+++-.+ +.+.|.+. .--+||+|..
T Consensus 55 ~lkH~~Tgae~lhl~reD~N~vFsI~Fr----Tpp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~p 130 (998)
T KOG2019|consen 55 LLKHKKTGAEVLHLDREDENNVFSIVFR----TPPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAP 130 (998)
T ss_pred eeeecCCCceeEeeccCCCCceeEEEee----cCCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCC
Confidence 3344457899987665543333344444 3446678999999999999999977544 44555442 3358999999
Q ss_pred ceEEEEEEccCC-CHHHHH---------------------------------------HHHHHHHHhhcCChhHHHHHHH
Q 011279 158 EQMGYSFDALKT-YVPEML---------------------------------------TKVKSEISEVSNNPQSLLLEAI 197 (489)
Q Consensus 158 ~~~~~~~~~~~~-~l~~~l---------------------------------------~~v~~el~~~~~~p~~~~~~~l 197 (489)
|+|.|-+++.+. ++..+. .+|-+|.+..-.+|...+...+
T Consensus 131 D~T~yPfattN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~ 210 (998)
T KOG2019|consen 131 DYTFYPFATTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLF 210 (998)
T ss_pred CcceeecccCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHH
Confidence 999999988653 333222 4566677777788999999999
Q ss_pred HHHhc-CCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCCCC-CCc
Q 011279 198 HSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK-SVY 274 (489)
Q Consensus 198 ~~~~~-~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~~~-~~~ 274 (489)
.+.+| ++.||....|.+..|..++.+++++||++||+|+|..+...| +..+++.++++.-|....+........ ...
T Consensus 211 Qq~L~p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~~qk~ 290 (998)
T KOG2019|consen 211 QQALFPENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVTFQKL 290 (998)
T ss_pred HHhhCccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCccccccc
Confidence 99999 999999888999999999999999999999999999999999 999999999987776553332221111 111
Q ss_pred CCCceEE--e--c---CCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhC-C
Q 011279 275 TGGDYRC--Q--A---DSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEF-P 346 (489)
Q Consensus 275 ~~~~~~~--~--~---~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~-g 346 (489)
-....++ . . +.+..++.+.+.|..+. ..+..+..++.+|..+|-+|.| |.+|+.|.|.. |
T Consensus 291 f~kp~rvve~~p~d~~~~p~Kq~~~s~s~L~~~-p~d~~etfaL~~L~~Ll~~gps-----------Sp~yk~LiESGLG 358 (998)
T KOG2019|consen 291 FDKPRRVVEKGPADPGDLPKKQTKCSNSFLSND-PLDTYETFALKVLSHLLLDGPS-----------SPFYKALIESGLG 358 (998)
T ss_pred cccCceeeeecCCCCCCCccceeEEEEEeecCC-chhHHHHHHHHHHHHHhcCCCc-----------cHHHHHHHHcCCC
Confidence 1111111 1 1 12336788888888876 3466788999999999998876 99999999863 3
Q ss_pred CEEEEEEeecccCCcceEEEEEEeC-cccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCh-HHHHHH
Q 011279 347 QVQSFSAFSNIYNHSGMFGIQGTTG-SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR-MVVSED 424 (489)
Q Consensus 347 ~~y~~~a~~~~~~~~g~~~i~~~~~-p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~-~~~~~~ 424 (489)
.-.++.+.+..+.-.+.|+|-...- .++++++-+.+...+.++++.| ++.+.++...+++.-++..+--.. -.++..
T Consensus 359 tEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~g-fd~drieAil~qiEislk~qst~fGL~L~~~ 437 (998)
T KOG2019|consen 359 TEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETG-FDNDRIEAILHQIEISLKHQSTGFGLSLMQS 437 (998)
T ss_pred cccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHhhhhhhccccchhHHHHHH
Confidence 3567777776666678888877754 4567788888899999999988 999888887777655544332221 123445
Q ss_pred HHHHHHHcCCCCCH---HH----HHHHHhcCCHHHHHHHHHHhcc-CC--ceEEEEcCCCCCCCH
Q 011279 425 IGRQVLTYGERKPV---EH----FLKTVEGVTAKDIASVAQKLLS-SP--LTMASYGDVINVPSY 479 (489)
Q Consensus 425 i~~~~~~~g~~~~~---~~----~~~~i~~vT~edI~~~a~~~l~-~~--~~~~v~G~~~~lp~~ 479 (489)
+...|.+..++..+ ++ +...+..-...=++..+++|+. ++ +++.+.++.+ .++.
T Consensus 438 i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~ek~~~lfq~lIkkYilnn~h~~t~smqpd~e-~~~~ 501 (998)
T KOG2019|consen 438 IISKWINDMDPFEPLKFEEQLKKLKQRLAEKSKKLFQPLIKKYILNNPHCFTFSMQPDPE-FAEK 501 (998)
T ss_pred HhhhhccCCCccchhhhhhHHHHHHHHHhhhchhHHHHHHHHHHhcCCceEEEEecCCch-hhHH
Confidence 55555445554222 22 3334443356668899999998 33 4444555543 3443
No 15
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.76 E-value=8.2e-18 Score=147.26 Aligned_cols=126 Identities=37% Similarity=0.585 Sum_probs=115.3
Q ss_pred EEEEecC-CCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEeeccceEEEEEEcc
Q 011279 89 KIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDAL 167 (489)
Q Consensus 89 ~V~~~~~-~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 167 (489)
||++..+ ..+.+.+++++++|+++|++...|++|+++||+++|+.+++..++.+.++..|+.++++++++++.|.++++
T Consensus 1 ~V~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~ 80 (149)
T PF00675_consen 1 KVVLVEDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSASVL 80 (149)
T ss_dssp EEEEEESTTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEEEe
Confidence 6786555 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCCCCCCh
Q 011279 168 KTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 214 (489)
Q Consensus 168 ~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~g~~ 214 (489)
+++++.+| ..+..++++...+|...+.+.+++.+| ++||++|+.||.
T Consensus 81 ~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~~~~~~~~~ 149 (149)
T PF00675_consen 81 SEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHPYGNPLLGPK 149 (149)
T ss_dssp GGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGGGSHSS-TG
T ss_pred cccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCCCCCCCCCC
Confidence 99999888 556678888899999999999999999 999999988863
No 16
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.75 E-value=7.6e-16 Score=163.17 Aligned_cols=381 Identities=18% Similarity=0.183 Sum_probs=243.7
Q ss_pred CCCCCCCCCCceEEEEcCCCcEEEEecC-CCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHH
Q 011279 68 PSLPDYVEPGKTKISTLPNGVKIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA 146 (489)
Q Consensus 68 ~~~~~~~~~~~~~~~~L~NGl~V~~~~~-~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~ 146 (489)
.++|+..+... .++.-.|..+|+.-+. ++..+.+.++++.+.... ...+-+.-|..-+...||.+++..++..+++.
T Consensus 517 ~dvp~~~~k~~-l~~~~~~~~~v~~~~~~tn~i~yl~~~~~~~~l~~-~llpyL~L~~~~l~~lgt~~~~y~e~~~~i~~ 594 (978)
T COG1026 517 GDVPDPIEKTS-LETEVSNEAKVLHHDLFTNGITYLRLYFDLDMLPS-ELLPYLPLFAFALTNLGTETYSYKELLNQIER 594 (978)
T ss_pred hcCCCcccccc-eeeeccCCcceEEeecCCCCeEEEEEEeecCCCCh-hhhhhHHHHHHHHHhcCCCCcCHHHHHHHHHH
Confidence 33444444333 3344568888885554 567999999999955443 33455566666666689999999999999999
Q ss_pred cCCeeeEeec-----------cceEEEEEEccCCCHHHHHHHHHHHHHhhcCChhHHHHHHHHH----------------
Q 011279 147 IGGNVQASAS-----------REQMGYSFDALKTYVPEMLTKVKSEISEVSNNPQSLLLEAIHS---------------- 199 (489)
Q Consensus 147 ~g~~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~~v~~el~~~~~~p~~~~~~~l~~---------------- 199 (489)
+.|.+++..+ +...++.+.++.++.+.+++.|++-+....-+...++.+.+.+
T Consensus 595 ~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~ 674 (978)
T COG1026 595 HTGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSI 674 (978)
T ss_pred HhCCceeeEeeccCCCccccccceEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHH
Confidence 8776555443 3568899999999999988444443332221111111111111
Q ss_pred -------Hhc-CCCCCCCCCC--ChhhhccC--------C---HHHHHHHHHhhCCCCCeEEEEec-CC-HHHHHHHHHH
Q 011279 200 -------AGY-SGALANPLLA--PESAINRL--------N---STLLEEFVAENYTGPRMVLAASG-VE-HDQLVSVAEP 256 (489)
Q Consensus 200 -------~~~-~~~~~~~~~g--~~~~l~~i--------~---~~~l~~f~~~~y~~~~~~l~ivG-vd-~~~l~~~i~~ 256 (489)
..+ ...+.....| -.+-|..+ . .+.|.+.+++.+..+|+-+++.| .+ ..++.+ ++
T Consensus 675 A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~~~~~~~e--~~ 752 (978)
T COG1026 675 ASSLANSRLSSAGALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDIDKILDLLE--NP 752 (978)
T ss_pred HHHHhhcccccchhHHHHhcChhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEecChhhhHHHHH--HH
Confidence 111 1111111000 00111111 1 35778888888888999778888 43 222222 33
Q ss_pred hhCCCC---CCC-CCCCCC---CCcCC-CceEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCC
Q 011279 257 LLSDLP---SIH-PREEPK---SVYTG-GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGG 328 (489)
Q Consensus 257 ~~~~lp---~~~-~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg 328 (489)
++...+ ... .+..+. ....+ .......++ +.++.+++|..-...+.++|+.++.|+..+|+.
T Consensus 753 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~--p~a~~~l~fs~~~~~y~hpd~~~l~vls~~L~~-------- 822 (978)
T COG1026 753 LLKFLEHLLPGFELPTPPKNPHLDLISSLSEATIIPS--PVAYNALAFSIGGLPYTHPDYAALQVLSEYLGS-------- 822 (978)
T ss_pred hhhhhcccCcccccCCCCCCcchhhhccccceEEecc--HHHHHHHhhhccCCCCCCccchHHHHHHHHhcc--------
Confidence 333332 111 111111 11112 222222333 445555666444444789999999999999994
Q ss_pred CCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011279 329 PGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTK 408 (489)
Q Consensus 329 ~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~ 408 (489)
..||.+||++ |++|++++.... +.|.|.++...+|+ ..+..+++.+.++.++.. .+++.|+++++-..+
T Consensus 823 ------~~lw~~IR~~-GGAYGa~as~~~--~~G~f~f~sYRDPn-~~kt~~v~~~~v~~l~s~-~~~~~d~~~~ilg~i 891 (978)
T COG1026 823 ------GYLWNKIREK-GGAYGASASIDA--NRGVFSFASYRDPN-ILKTYKVFRKSVKDLASG-NFDERDLEEAILGII 891 (978)
T ss_pred ------chhHHHHHhh-cccccccccccc--CCCeEEEEecCCCc-HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhh
Confidence 7899999998 669999887554 46899999999997 888899999999999885 599999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCHHHHHHHHHHhcc---CCceEEEEcCCC
Q 011279 409 SAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLS---SPLTMASYGDVI 474 (489)
Q Consensus 409 ~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~~~i~~vT~edI~~~a~~~l~---~~~~~~v~G~~~ 474 (489)
+.+.+ .+++......-....+.+-.+...+.+.+.|.++|++||++++++||. +.-+++++|...
T Consensus 892 ~~~d~-p~sp~~~~~~s~~~~~sg~~~~~~qa~re~~l~vt~~di~~~~~~yl~~~~~e~~i~~~~~~e 959 (978)
T COG1026 892 STLDT-PESPASEGSKSFYRDLSGLTDEERQAFRERLLDVTKEDIKEVMDKYLLNFSSENSIAVFAGEE 959 (978)
T ss_pred ccccc-ccCCcceehhhHHHHHhcCCHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccceEEEEechh
Confidence 88866 456665554333344323333556789999999999999999999997 566777777643
No 17
>PTZ00432 falcilysin; Provisional
Probab=99.70 E-value=7.4e-15 Score=165.49 Aligned_cols=368 Identities=14% Similarity=0.073 Sum_probs=241.2
Q ss_pred EcCCCcEEEEecCCCC-eEEEEEEEccccCCCCCCCCcHHHHHHHh-hcccCCCCChHHHHHHHHHcCCeeeEe----ec
Q 011279 83 TLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERM-AFRSTRNRSHLRIVREVEAIGGNVQAS----AS 156 (489)
Q Consensus 83 ~L~NGl~V~~~~~~~~-~~~i~l~i~~Gs~~e~~~~~G~a~lle~l-~~~gt~~~s~~~l~~~l~~~g~~~~~~----~~ 156 (489)
...+|++|+..+.++. .+++.++++.....+. ......|+..+ ...||.++++.++...++...|+++++ ++
T Consensus 664 ~~~~~~~~~~~~~~TnGi~y~~~~fdl~~l~~e--~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~ 741 (1119)
T PTZ00432 664 SDGGSVTVLVHPIESRGILYLDFAFSLDSLTVD--ELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSE 741 (1119)
T ss_pred ccCCCcceEEEecCCCCeEEEEEEecCCCCCHH--HHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEecc
Confidence 3468999997676665 9999999999876542 33344455444 447999999999999999987776654 22
Q ss_pred ------------cceEEEEEEccCCCHHHHHHH---------------HHHHHHhhcCChhHHHHHHHHHHhc---CCCC
Q 011279 157 ------------REQMGYSFDALKTYVPEMLTK---------------VKSEISEVSNNPQSLLLEAIHSAGY---SGAL 206 (489)
Q Consensus 157 ------------~~~~~~~~~~~~~~l~~~l~~---------------v~~el~~~~~~p~~~~~~~l~~~~~---~~~~ 206 (489)
.....+++.|+.++++.+++. +++-+++...+-...+...-|..+. ...+
T Consensus 742 ~~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~ 821 (1119)
T PTZ00432 742 TNNLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKF 821 (1119)
T ss_pred ccccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcC
Confidence 336889999999999999822 2222222211111111111111110 0000
Q ss_pred C-----CCCC-C--ChhhhccC-----------CHHHHHHHHHhhCCCCCeEEEEec-C-CHHHHHHHHHHhhCCCCCCC
Q 011279 207 A-----NPLL-A--PESAINRL-----------NSTLLEEFVAENYTGPRMVLAASG-V-EHDQLVSVAEPLLSDLPSIH 265 (489)
Q Consensus 207 ~-----~~~~-g--~~~~l~~i-----------~~~~l~~f~~~~y~~~~~~l~ivG-v-d~~~l~~~i~~~~~~lp~~~ 265 (489)
. ...+ | -..-|..+ =.+.|.+.++..|+.+|+.+.++| . ..+.+.+.+..++..++...
T Consensus 822 S~~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~ 901 (1119)
T PTZ00432 822 SVSDYADELVNGYSQLLFLKETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSSTF 901 (1119)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhccccc
Confidence 0 0000 0 01111111 134577888889999999999999 5 45677777777777775321
Q ss_pred ---C---CC-CCCC-C-----cCC--CceEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCC
Q 011279 266 ---P---RE-EPKS-V-----YTG--GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPG 330 (489)
Q Consensus 266 ---~---~~-~~~~-~-----~~~--~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~g 330 (489)
. .. .... . +.. ...-+..++ ...+++.+..... +.+++..++.|+..+|..
T Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~--~V~yv~~~~~~~~--~~~~~~~~l~Vl~~~L~~---------- 967 (1119)
T PTZ00432 902 KENDNKSSDKVWVKEVLDKKLMESVDKNEFIVLPT--RVNFVGMGGKLFD--KSDKVDGSFQVIVHYLKN---------- 967 (1119)
T ss_pred ccccccccccccccccccccccCCcccceEEEccC--ceeEEEEeccccc--CCCccCHHHHHHHHHHcc----------
Confidence 1 00 0000 0 111 111122333 5556666643332 456778999999999984
Q ss_pred CCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHH
Q 011279 331 KGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVAT--PGEVDQVQLDRAKQSTK 408 (489)
Q Consensus 331 kgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~i~~~~~el~~l~~--~g~it~~eL~~aK~~l~ 408 (489)
..||+.||++ |++|++++... ..|.|.++...+|+ ..+.++++.+....+.+ . .+|+++|+++|-..+
T Consensus 968 ----~yLw~~IR~~-GGAYG~~~~~~---~~G~~~f~SYRDPn-~~~Tl~~f~~~~~~l~~~~~-~~~~~~l~~~iig~~ 1037 (1119)
T PTZ00432 968 ----SYLWKTVRMS-LGAYGVFADLL---YTGHVIFMSYADPN-FEKTLEVYKEVASALREAAE-TLTDKDLLRYKIGKI 1037 (1119)
T ss_pred ----ccchHHHccc-CCccccCCccC---CCCeEEEEEecCCC-HHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHH
Confidence 7899999998 66999986543 25899998888987 77888888888777766 3 399999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHcCC-CCCHHHHHHHHhcCCHHHHHHHHHHhcc--CCceEEEEcCCCCCCC
Q 011279 409 SAILMNLESRMVVSEDIGRQVLTYGE-RKPVEHFLKTVEGVTAKDIASVAQKLLS--SPLTMASYGDVINVPS 478 (489)
Q Consensus 409 ~~~~~~~es~~~~~~~i~~~~~~~g~-~~~~~~~~~~i~~vT~edI~~~a~~~l~--~~~~~~v~G~~~~lp~ 478 (489)
+.+...+ ++..........++ .|. ....+++.+.|-++|++||+++|++|+. +...++|+|+..++-+
T Consensus 1038 ~~~D~p~-~p~~~g~~~~~~~l-~g~t~e~rq~~R~~il~~t~edi~~~a~~~~~~~~~~~~~v~g~~~~~~~ 1108 (1119)
T PTZ00432 1038 SNIDKPL-HVDELSKLALLRII-RNESDEDRQKFRKDILETTKEDFYRLADLMEKSKEWEKVIAVVNSKTSDT 1108 (1119)
T ss_pred hccCCCC-ChHHHHHHHHHHHH-cCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEEEECHHHhhh
Confidence 8876644 55555554444444 444 4667889999999999999999999998 5578999999876543
No 18
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.6e-14 Score=149.28 Aligned_cols=390 Identities=14% Similarity=0.133 Sum_probs=266.3
Q ss_pred CCCcCCCCCCCCCCCCC-CCCC---CceEEEEcCCCcEEEEecCC--C-CeEEEEEEEccccCCCCCCCCcHHHHHHHhh
Q 011279 56 SLDFPLPGVSLPPSLPD-YVEP---GKTKISTLPNGVKIASETSV--S-PVASISLYVGCGSIYESPISFGTTHLLERMA 128 (489)
Q Consensus 56 ~~~~plp~~~~p~~~~~-~~~~---~~~~~~~L~NGl~V~~~~~~--~-~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~ 128 (489)
.+..|.|+..+|..+.. +.++ .+.-....+|+..++.++.. . |...+.+.++......++...-+..|+..++
T Consensus 476 ~l~lP~~N~fIp~~~~~~~~~~~~~~p~ll~~~~~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la 555 (937)
T COG1025 476 ELSLPEPNPFIPDDVSLIKSEKKFTFPQLLSEDPNLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYLA 555 (937)
T ss_pred cccCCCCCCCCCccccccccccCCCCchhhhcCCCceEEEecCCccccCCcceeEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 45567777777766532 1111 12222334444444444443 4 8999999999888888777777777777777
Q ss_pred cccCCCCChHHHHHHHHHcCCeeeEeeccceEEEEEEccCCCHHHHHHHHHHHHHhhc----------------------
Q 011279 129 FRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMLTKVKSEISEVS---------------------- 186 (489)
Q Consensus 129 ~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~v~~el~~~~---------------------- 186 (489)
+.....++. -....|..++...+.+...+++++.++.++.++..+..-+....
T Consensus 556 ~dal~~~~y-----~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~ 630 (937)
T COG1025 556 NDALDKLSY-----QASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNALT 630 (937)
T ss_pred HHHHHhhhh-----HHHhcceEEEeecCCCceEEEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 654444443 36667888998889999999999999999988833333333222
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCC
Q 011279 187 NNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH 265 (489)
Q Consensus 187 ~~p~~~~~~~l~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~ 265 (489)
.+|...+.+.+.... .+...+.....+.++.++.+++..|....+.+....+.++| +..+++.++++.....++...
T Consensus 631 ~~p~~~~~~~l~~l~--~~~~~s~~e~~~~l~~v~~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~ 708 (937)
T COG1025 631 GKPYRQALDGLTGLL--QVPYWSREERRNALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAIG 708 (937)
T ss_pred cCCHHHHHHHhhhhh--CCCCcCHHHHHHHhhhccHHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcccC
Confidence 344444433333222 11112211234678999999999999999999999999999 999999999887666665444
Q ss_pred CCCC-CCC--CcCCCceE-EecCCCCCceEEEEEeecCCCCCC-CcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHH
Q 011279 266 PREE-PKS--VYTGGDYR-CQADSGDQLTHFVLAFELPGGWHK-DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRR 340 (489)
Q Consensus 266 ~~~~-~~~--~~~~~~~~-~~~~~~~~~~~v~l~~~~~~~~~~-~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~ 340 (489)
...- .+. ...++... .........+..++.+... ++ .++.+...++.+++. -.+|.+
T Consensus 709 s~~~~~~~~~~~~~~~~~~e~~~~~~~~an~~i~~~~~---~~~~~~~a~s~Ll~~l~~---------------~~ff~~ 770 (937)
T COG1025 709 STWYRNPSVYLLKGGTRIFETVGGESDSANAAILYPQQ---YDEIKSSALSSLLGQLIH---------------PWFFDQ 770 (937)
T ss_pred CcccCCCceeccCCCeeEeeeccCCcccccceeEeccc---cchHHHHHHHHHHHHHHh---------------HHhHHH
Confidence 3221 111 12233322 2222111334444444443 34 344444457777776 889999
Q ss_pred HHHhCCCEEEEEEeecccCCcceEEEEEEeC---cccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 011279 341 VLNEFPQVQSFSAFSNIYNHSGMFGIQGTTG---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLES 417 (489)
Q Consensus 341 lR~~~g~~y~~~a~~~~~~~~g~~~i~~~~~---p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es 417 (489)
||++.++.|-|.+++....++..+.|+++++ |+...+.+..+.+.+..... ++++++++..|..+++++.....+
T Consensus 771 LRTkeQLGY~Vfs~~~~v~~~~gi~f~vqS~~~~p~~L~~r~~~F~~~~~~~l~--~ms~e~Fe~~k~alin~il~~~~n 848 (937)
T COG1025 771 LRTKEQLGYAVFSGPREVGRTPGIGFLVQSNSKSPSYLLERINAFLETAEPELR--EMSEEDFEQIKKALINQILQPPQN 848 (937)
T ss_pred hhhhhhcceEEEecceeecCccceEEEEeCCCCChHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999988777666666777765 66777888888888877766 399999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCC--CCHHHHHHHHhcCCHHHHHHHHHHhcc----CCceEEEEcCC
Q 011279 418 RMVVSEDIGRQVLTYGER--KPVEHFLKTVEGVTAKDIASVAQKLLS----SPLTMASYGDV 473 (489)
Q Consensus 418 ~~~~~~~i~~~~~~~g~~--~~~~~~~~~i~~vT~edI~~~a~~~l~----~~~~~~v~G~~ 473 (489)
....+..++..+. .|.. +..+..++.++.+|.+++.++....+. ..+.+-+.|+.
T Consensus 849 l~e~a~r~~~~~~-~g~~~Fd~~ek~i~~vk~LT~~~l~~f~~~~l~~~~g~~l~~~i~g~~ 909 (937)
T COG1025 849 LAEEASRLWKAFG-RGNLDFDHREKKIEAVKTLTKQKLLDFFENALSYEQGSKLLSHIRGQN 909 (937)
T ss_pred HHHHHHHHHHHhc-cCCCCcCcHHHHHHHHHhcCHHHHHHHHHHhhcccccceeeeeeeccc
Confidence 9988888885543 4432 567889999999999999999998887 24667777744
No 19
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.7e-12 Score=131.25 Aligned_cols=364 Identities=16% Similarity=0.092 Sum_probs=229.8
Q ss_pred EEcCCCcEEEEecCCC-CeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEeec----
Q 011279 82 STLPNGVKIASETSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS---- 156 (489)
Q Consensus 82 ~~L~NGl~V~~~~~~~-~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~---- 156 (489)
...-||++|...+... ..+++++.++.|+..+.- -+-+.-|++.++..||+..+..++...+..+.|.++++..
T Consensus 564 v~dingvkv~~~dl~tngi~Y~r~~~~l~~~p~eL-~PylPlfc~sll~lGt~~lsf~el~qqI~rkTGGiS~~p~~~s~ 642 (998)
T KOG2019|consen 564 VGDINGVKVQRCDLFTNGITYTRVVFDLNSLPEEL-LPYLPLFCQSLLNLGTGDLSFVELEQQIGRKTGGISVSPLVSSD 642 (998)
T ss_pred eeeccCceeEEeeccCCceEEEEEeeccccCcHHh-hcchHHHHHHHHhcCCCcccHHHHHHHhhhhcCceeecceeccC
Confidence 4456999999776664 599999999999976642 4557888888889999999999999999998776665432
Q ss_pred ------cceEEEEEEccCCCHHHHHHHHHHHHHhhc---CChhHHHHHHHHHH-----hc-CCCCC-------CCCCCC-
Q 011279 157 ------REQMGYSFDALKTYVPEMLTKVKSEISEVS---NNPQSLLLEAIHSA-----GY-SGALA-------NPLLAP- 213 (489)
Q Consensus 157 ------~~~~~~~~~~~~~~l~~~l~~v~~el~~~~---~~p~~~~~~~l~~~-----~~-~~~~~-------~~~~g~- 213 (489)
.-...|...++..+.+.+++.+..-+.+-. .+--..+..+..+. += +|.++ ....|.
T Consensus 643 ~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~~rs~a~l~~ag~i 722 (998)
T KOG2019|consen 643 DGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAGWI 722 (998)
T ss_pred CCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchhHhhhhhcccCcccch
Confidence 123667778888888887722111111110 00000111100000 00 11110 000011
Q ss_pred hhhhccCC-------------------HHHHHHHHHhhCCCCCeEEEEec--CCHHHHHHHHHHhhCCCCCC-CCCCC--
Q 011279 214 ESAINRLN-------------------STLLEEFVAENYTGPRMVLAASG--VEHDQLVSVAEPLLSDLPSI-HPREE-- 269 (489)
Q Consensus 214 ~~~l~~i~-------------------~~~l~~f~~~~y~~~~~~l~ivG--vd~~~l~~~i~~~~~~lp~~-~~~~~-- 269 (489)
-+.+..++ .+.|.++.+.....++|.+.+.- ..+..+++.+++++..+|.. +....
T Consensus 723 ~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp~e~p~g~~st 802 (998)
T KOG2019|consen 723 SEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDSLPRENPSGSKST 802 (998)
T ss_pred HhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHhccccCCCCCccC
Confidence 12222221 23455555555578999999888 89999999999999988842 22221
Q ss_pred CCCC-cCC-CceEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCC
Q 011279 270 PKSV-YTG-GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQ 347 (489)
Q Consensus 270 ~~~~-~~~-~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~ 347 (489)
..+. ..+ ..+++..+. -+..++.-+..+-+ +..++...+.|+..+|.. ..|+.+||++ |+
T Consensus 803 ~d~r~p~~~~~i~~~~P~-fqvnyvgka~~~vp--yt~~d~asl~vlS~~lt~--------------k~Lh~evRek-GG 864 (998)
T KOG2019|consen 803 WDARLPLRSEAIRVVIPT-FQVNYVGKAGLGVP--YTHPDGASLQVLSKLLTN--------------KWLHDEVREK-GG 864 (998)
T ss_pred ccccCCCCceeEEEeccc-cchhhhhhhccccc--CCCCCCcHHHHHHHHHHH--------------HHHHHHHHHh-cC
Confidence 1111 111 122333331 02334444444433 788999999999999984 8999999998 55
Q ss_pred EEEEEEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011279 348 VQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGR 427 (489)
Q Consensus 348 ~y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~ 427 (489)
+|+.++.++.+ .|+|+++...+|+ .-+.++.+...-.-++.. .+++++|+.||-....+... ...+...- +.+
T Consensus 865 AYGgg~s~~sh--~GvfSf~SYRDpn-~lktL~~f~~tgd~~~~~-~~~~~dldeAkl~~f~~VDa-p~~P~~kG--~~~ 937 (998)
T KOG2019|consen 865 AYGGGCSYSSH--SGVFSFYSYRDPN-PLKTLDIFDGTGDFLRGL-DVDQQDLDEAKLGTFGDVDA-PQLPDAKG--LLR 937 (998)
T ss_pred ccCCccccccc--cceEEEEeccCCc-hhhHHHhhcchhhhhhcC-CccccchhhhhhhhcccccC-CcCCcccc--hHH
Confidence 99988876654 7899999999987 556666666655445443 49999999999998877643 22232221 223
Q ss_pred HHHHcCCC-CCHHHHHHHHhcCCHHHHHHHHHHhcc-CC--ceEEEEcCC
Q 011279 428 QVLTYGER-KPVEHFLKTVEGVTAKDIASVAQKLLS-SP--LTMASYGDV 473 (489)
Q Consensus 428 ~~~~~g~~-~~~~~~~~~i~~vT~edI~~~a~~~l~-~~--~~~~v~G~~ 473 (489)
++ .|.. ...+...+.|-+++.+|+.++|.+|+. .. ..+++.|+-
T Consensus 938 -fl-~gvtDemkQarREqll~vSl~d~~~vae~yl~~~~~~~~vav~g~E 985 (998)
T KOG2019|consen 938 -FL-LGVTDEMKQARREQLLAVSLKDFKAVAEAYLGVGDKGVAVAVAGPE 985 (998)
T ss_pred -HH-hcCCHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCcceEEEeeCcc
Confidence 32 4443 445667889999999999999999998 33 556666554
No 20
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.5e-11 Score=132.64 Aligned_cols=378 Identities=14% Similarity=0.168 Sum_probs=265.7
Q ss_pred CCCCcCCCCCCCCCCC-----C-CCCCCCceEEEEcCCCcEEEEecCC---CCeEEEEEEEccccCCCCCCCCcHHHHHH
Q 011279 55 PSLDFPLPGVSLPPSL-----P-DYVEPGKTKISTLPNGVKIASETSV---SPVASISLYVGCGSIYESPISFGTTHLLE 125 (489)
Q Consensus 55 ~~~~~plp~~~~p~~~-----~-~~~~~~~~~~~~L~NGl~V~~~~~~---~~~~~i~l~i~~Gs~~e~~~~~G~a~lle 125 (489)
+.+..|.|+..+|..- + +..+.| ....=....+++++..+ .|.+.+.+.+.+.-....+...+++.++.
T Consensus 482 ~~l~lP~~nefI~t~f~~~~~~~~~~~~P--~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~ 559 (974)
T KOG0959|consen 482 PELHLPTPNEFIPTDFSILPAPIPKLEYP--VLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSVLSTLYV 559 (974)
T ss_pred ccccCCCCCcccccccccccccCccccCC--eeeecCCcceeEEecccccccchhheeeeecCcccccCHHHHHHHHHHH
Confidence 4667788877766431 1 112222 33333456688864433 47999999999999999999999999999
Q ss_pred HhhcccCCCCChHHHHHHHHHcCCeeeEeeccceEEEEEEccCCCHHHHHHH---------------------HHHHHHh
Q 011279 126 RMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMLTK---------------------VKSEISE 184 (489)
Q Consensus 126 ~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---------------------v~~el~~ 184 (489)
.++...... ........|..+..+.+.......+.+.++.++.+++. +..++++
T Consensus 560 ~~l~d~l~E-----~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~n 634 (974)
T KOG0959|consen 560 RLLKDQLNE-----YLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELRN 634 (974)
T ss_pred HHHHHHHhH-----HHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh
Confidence 887543333 34446778889999999999999999999999887722 2333333
Q ss_pred -hcCChhHHHHHHHHHHhc-CCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCC
Q 011279 185 -VSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDL 261 (489)
Q Consensus 185 -~~~~p~~~~~~~l~~~~~-~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~l 261 (489)
...+|.....+.+.- +. ...+... ...+.++.++.+++..|..+++.+.-+..+|.| ++.++..++++.....+
T Consensus 635 ~~~~~p~~~a~~~~~l-ll~~~~W~~~--e~~~al~~~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l 711 (974)
T KOG0959|consen 635 HAFDNPYQLANDYLLL-LLEESIWSKE--ELLEALDDVTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDIL 711 (974)
T ss_pred hhhccHHHHHHHHHHH-HhhccccchH--HHHHHhhcccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhh
Confidence 234555444443333 33 3333332 244778889999999999999999999999999 99999999866655555
Q ss_pred CCCCCCCC-C-------C---CCc-CCCceEEe-c-CCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCC
Q 011279 262 PSIHPREE-P-------K---SVY-TGGDYRCQ-A-DSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAG 327 (489)
Q Consensus 262 p~~~~~~~-~-------~---~~~-~~~~~~~~-~-~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~g 327 (489)
....+.. + . ... .|....+. . ....+.+.+.+.+.... .+..+...+.++.+++.
T Consensus 712 -~~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~~n~~~~ns~i~~~~Q~~~--~~~~~~~~~~L~~~li~-------- 780 (974)
T KOG0959|consen 712 -KSAAPNSRPLFRSEHLPRREIQLPNGDYYFYRHLLNKTDDNSCIEVYYQIGV--QDTRDNAVLGLLEQLIK-------- 780 (974)
T ss_pred -hccCCCCccccccccCcccceeccCCceEEEEcccccCCCCceEEEEEEccc--chhHHHHHHHHHHHHhc--------
Confidence 2211111 1 0 112 23333222 1 22336777888888643 56778888999999998
Q ss_pred CCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEEE--eCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 011279 328 GPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT--TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQ 405 (489)
Q Consensus 328 g~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~~--~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~ 405 (489)
..+|+.||++.++.|-+.+......+.-.+.|.++ -.++.++.-|+.+++.+.+... ..++++++.-+.
T Consensus 781 -------ep~Fd~LRTkeqLGYiv~~~~r~~~G~~~~~i~Vqs~~~~~~le~rIe~fl~~~~~~i~--~m~~e~Fe~~~~ 851 (974)
T KOG0959|consen 781 -------EPAFDQLRTKEQLGYIVSTGVRLNYGTVGLQITVQSEKSVDYLEERIESFLETFLEEIV--EMSDEEFEKHKS 851 (974)
T ss_pred -------cchHHhhhhHHhhCeEeeeeeeeecCcceeEEEEccCCCchHHHHHHHHHHHHHHHHHH--hcchhhhhhhHH
Confidence 78899999988888888876654443333444444 3477888888888888888776 489999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCCHHHHHHHHHHhcc
Q 011279 406 STKSAILMNLESRMVVSEDIGRQVLTYGER-KPVEHFLKTVEGVTAKDIASVAQKLLS 462 (489)
Q Consensus 406 ~l~~~~~~~~es~~~~~~~i~~~~~~~g~~-~~~~~~~~~i~~vT~edI~~~a~~~l~ 462 (489)
.++......-.+......++|..+...... ...+..++.+..||.+|+-.+...++.
T Consensus 852 ~lI~~~~ek~~~l~~e~~~~w~ei~~~~y~f~r~~~~v~~l~~i~k~~~i~~f~~~~~ 909 (974)
T KOG0959|consen 852 GLIASKLEKPKNLSEESSRYWDEIIIGQYNFDRDEKEVEALKKITKEDVINFFDEYIR 909 (974)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHHhhhhcchhhHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 999999888777777777777777633332 445677888999999999999999887
No 21
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.9e-06 Score=85.95 Aligned_cols=381 Identities=14% Similarity=0.132 Sum_probs=207.3
Q ss_pred EEEEcCCCcEEE-EecCCCCeEEEEEEEccccCCCC--CCCCcHHHHHHHh--hcccCCCC----ChHHHHHHHHHcCCe
Q 011279 80 KISTLPNGVKIA-SETSVSPVASISLYVGCGSIYES--PISFGTTHLLERM--AFRSTRNR----SHLRIVREVEAIGGN 150 (489)
Q Consensus 80 ~~~~L~NGl~V~-~~~~~~~~~~i~l~i~~Gs~~e~--~~~~G~a~lle~l--~~~gt~~~----s~~~l~~~l~~~g~~ 150 (489)
+.+.++|=--.+ +...+...+.+..+++..+..-. |+..-.+.+++.- +..|+-+- +.+++.+.+.....+
T Consensus 542 ~~T~~~~fp~fi~l~h~ps~Fvel~fl~dss~i~~sl~pYl~~f~~l~~~~pa~ldgtiptp~~~s~~~v~~~~~s~~id 621 (1022)
T KOG0961|consen 542 QSTFLAQFPFFINLHHCPSKFVELFFLLDSSNISISLRPYLFLFTDLLFESPAMLDGTIPTPVLTSADDVAKHFTSDLID 621 (1022)
T ss_pred eecccccCCceeecccCchHHHhHhhhhccccCchhhhhHHHHHHHHHhcCHHHhcCCCCcchhhhHHHHHHHHHhhhhh
Confidence 334444433333 34445667777777777665522 2222233333221 23466553 445555555443332
Q ss_pred eeEe-----eccceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-C
Q 011279 151 VQAS-----ASREQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-S 203 (489)
Q Consensus 151 ~~~~-----~~~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~ 203 (489)
.+.. +-++-..+.+.+.+++.+..+ +....++.....|....+.......+| .
T Consensus 622 ~si~~g~~G~~~~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg~~vlss~~~~~lY~~ 701 (1022)
T KOG0961|consen 622 HSIQVGVSGLYDRLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDGCTVLSSAVASMLYGK 701 (1022)
T ss_pred hhhcccccccchhheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCccEehHHHHHHHHhcc
Confidence 2222 346778899999988777655 222333334445555566677777777 6
Q ss_pred CCCCCCC--CCChhhhccCC-------------HHHHHHHHHhhCCCCCeEEEEec-CCH-HH-HHHHHHHhhCCCCCCC
Q 011279 204 GALANPL--LAPESAINRLN-------------STLLEEFVAENYTGPRMVLAASG-VEH-DQ-LVSVAEPLLSDLPSIH 265 (489)
Q Consensus 204 ~~~~~~~--~g~~~~l~~i~-------------~~~l~~f~~~~y~~~~~~l~ivG-vd~-~~-l~~~i~~~~~~lp~~~ 265 (489)
+.+.... +--++-++.|. .++++.|. ..-+.+.+.++| ++. +. +..+ .....+...+.
T Consensus 702 ~slk~s~d~L~~Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~---l~~n~~~ihvvgDI~kid~~~~~W-n~l~~~~~~~n 777 (1022)
T KOG0961|consen 702 NSLKISFDELVLEKLLEEISKDVMNNPEAILEKLEQMRSYA---LFSNGVNIHVVGDIDKIDPKMLSW-NWLQADPRFGN 777 (1022)
T ss_pred cchhhcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HhhcceEEEEEeehhcCCccccCc-hhhhcCcccCC
Confidence 5554432 11112222221 12333311 234788899999 752 21 1111 11111111110
Q ss_pred CCCC---------CCC-CcCCCc--eEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCc
Q 011279 266 PREE---------PKS-VYTGGD--YRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGM 333 (489)
Q Consensus 266 ~~~~---------~~~-~~~~~~--~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm 333 (489)
+... ..+ .+..+. ..+..+. ++.+.+...-++..- +.+++.+...++.++|+- |
T Consensus 778 P~~~f~~tf~~~~~~s~e~gsssk~~~I~~p~-sESs~l~~sip~~~~-w~dpel~~~~l~~~YL~~------------~ 843 (1022)
T KOG0961|consen 778 PGHQFSATFEAGENVSLELGSSSKELLIGVPG-SESSFLYQSIPLDAN-WNDPELIPAMLFGQYLSQ------------C 843 (1022)
T ss_pred chhhcccccccCcccceeccCCcceeEecCCC-ccccceeeecccccc-cCCcchhHHHHHHHHHHh------------c
Confidence 1000 011 111122 2222222 244555545445433 367888999999999986 4
Q ss_pred ccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHHHH
Q 011279 334 YSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVAT-PGEVDQVQLDRAKQSTKSAIL 412 (489)
Q Consensus 334 ~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~i~~~~~el~~l~~-~g~it~~eL~~aK~~l~~~~~ 412 (489)
..++|+.+|-. |++|+++.+..+..+.-.+.||-+.+| .++.+.-.+.++.+.. .+++++.+++-||......+.
T Consensus 844 eGPfW~~IRG~-GLAYGanm~~~~d~~~~~~~iyr~ad~---~kaye~~rdiV~~~vsG~~e~s~~~~egAk~s~~~~~~ 919 (1022)
T KOG0961|consen 844 EGPFWRAIRGD-GLAYGANMFVKPDRKQITLSIYRCADP---AKAYERTRDIVRKIVSGSGEISKAEFEGAKRSTVFEMM 919 (1022)
T ss_pred ccchhhhhccc-chhccceeEEeccCCEEEEEeecCCcH---HHHHHHHHHHHHHHhcCceeecHHHhccchHHHHHHHH
Confidence 58899999986 899999988777666666777766665 4455555566666655 457999999999999887764
Q ss_pred HhcCChHHH---HHHHHHHHHHcCCCCCHHHHHHHHhcCCHHHHHHHHHHhcc----CC-ceEEEEcCCCCCCCHHHHHH
Q 011279 413 MNLESRMVV---SEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLS----SP-LTMASYGDVINVPSYDAVSS 484 (489)
Q Consensus 413 ~~~es~~~~---~~~i~~~~~~~g~~~~~~~~~~~i~~vT~edI~~~a~~~l~----~~-~~~~v~G~~~~lp~~~~~~~ 484 (489)
. +|..... ...+-......+ ......++++|.+||.+|+.+..+.|+. ++ .+-++.--.. ..+++++
T Consensus 920 ~-~Eng~~~~a~~~~~l~~~~q~~-~~fn~~~leri~nvT~~~~~~~~~~y~~~~Fds~~~va~i~~hpa---Kle~~~e 994 (1022)
T KOG0961|consen 920 K-RENGTVSGAAKISILNNFRQTP-HPFNIDLLERIWNVTSEEMVKIGGPYLARLFDSKCFVASIAVHPA---KLEEMKE 994 (1022)
T ss_pred H-HhccceechHHHHHHHHHHhcC-CcccHHHHHHHHHhhHHHHHHhcccceehhhcccCceEEEeccHH---HHHHHHH
Confidence 4 4433221 112222332222 2344789999999999999999887664 33 3333332222 3466666
Q ss_pred Hhh
Q 011279 485 KFK 487 (489)
Q Consensus 485 ~~~ 487 (489)
.|-
T Consensus 995 ~F~ 997 (1022)
T KOG0961|consen 995 AFP 997 (1022)
T ss_pred Hhh
Confidence 553
No 22
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=98.00 E-value=0.00012 Score=72.45 Aligned_cols=166 Identities=23% Similarity=0.339 Sum_probs=105.5
Q ss_pred EEcCCCcEEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEeeccceEE
Q 011279 82 STLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMG 161 (489)
Q Consensus 82 ~~L~NGl~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 161 (489)
.+|+||+||...+.-..-+++|+. +-|--.+-.+-.|+|||+||.+- .+++..+ ..||+|+|.+|+
T Consensus 2 IvL~NGVRiFin~~M~KDIYlGIs-~FGFe~DI~~iLGiAHLLEHILI----sFD~~~F---------~ANASTaRsYMS 67 (590)
T PF03410_consen 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILI----SFDSSKF---------LANASTARSYMS 67 (590)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHee----ecchHHh---------hcccchhhhhhh
Confidence 479999999998887788888876 44555555678899999999974 2444332 467899999999
Q ss_pred EEEEccCCC-----HHHHH---------------HHHHHHHHhhcCChhHHHHHHHH---HHhc--CCCCCCCCCCChhh
Q 011279 162 YSFDALKTY-----VPEML---------------TKVKSEISEVSNNPQSLLLEAIH---SAGY--SGALANPLLAPESA 216 (489)
Q Consensus 162 ~~~~~~~~~-----l~~~l---------------~~v~~el~~~~~~p~~~~~~~l~---~~~~--~~~~~~~~~g~~~~ 216 (489)
|-+.+.+.. +.+++ ..++.-++++++. +..-++.+| -..| ++.+-+- |-.+.
T Consensus 68 FWC~si~g~~~~DAvrtliSWFF~~g~Lk~~F~~~~i~~hikELENE-YYFRnEvfHCmDvLtfL~gGDLYNG--GRi~M 144 (590)
T PF03410_consen 68 FWCKSIRGRTYIDAVRTLISWFFDNGKLKDNFSRSKIKNHIKELENE-YYFRNEVFHCMDVLTFLGGGDLYNG--GRIDM 144 (590)
T ss_pred hhhhhccCCChhHHHHHHHHHhhcCCcccccccHhHHHHHHHHHhhh-hhhhhhHHHHHHHHHHhcCCcccCC--chHHH
Confidence 988887654 22222 5566666666432 222222222 2344 4444332 45566
Q ss_pred hccCCH--HHHHHHHHhhCCCCCeEEEEecCCHHHHHHHHHHhhCCCCCCCC
Q 011279 217 INRLNS--TLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHP 266 (489)
Q Consensus 217 l~~i~~--~~l~~f~~~~y~~~~~~l~ivGvd~~~l~~~i~~~~~~lp~~~~ 266 (489)
+++++. +-|.+-.++. ...|+++++=-.+ +.++.++++.||.||.-+.
T Consensus 145 L~~l~~i~~mL~~RM~~I-~GpniVIFVk~l~-~~~l~lL~~TFGtLP~cP~ 194 (590)
T PF03410_consen 145 LNNLNDIRNMLSNRMHRI-IGPNIVIFVKELN-PNILSLLSNTFGTLPSCPL 194 (590)
T ss_pred HhhhHHHHHHHHHHHHhh-cCCcEEEEEeccC-HHHHHHHHHhcCCCCCCcc
Confidence 666542 1222222222 4457666655587 6678999999999997654
No 23
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=97.99 E-value=0.00022 Score=73.87 Aligned_cols=169 Identities=17% Similarity=0.154 Sum_probs=115.6
Q ss_pred CceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCC-CCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEE
Q 011279 288 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGG-SFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 366 (489)
Q Consensus 288 ~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~-sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i 366 (489)
+...+.+.+.....+...........|..++..|. ...+ .-+.+.+ ++.|.. ..|+.+. + ....
T Consensus 37 ~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~--------~~i~~~~-~~~G~~--~na~ts~--d--~t~y 101 (438)
T COG0612 37 PTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPS--------AELAEAF-EKLGGQ--LNAFTSF--D--YTVY 101 (438)
T ss_pred CEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCCh--------HHHHHHH-HHhcCe--eeccccc--h--hhhh
Confidence 56666666664332223344456678888886541 1000 0344444 344544 3333221 1 1222
Q ss_pred EEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 011279 367 QGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHFLKT 444 (489)
Q Consensus 367 ~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~--~~~~~~~~~ 444 (489)
++.+.+++.+++++.+.+.+.+- .|+++++++.|..++..+.+..+++...+.......+..+.+ .++.-..+.
T Consensus 102 ~~~~l~~~~~~~l~llad~l~~p----~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~~e~ 177 (438)
T COG0612 102 YLSVLPDNLDKALDLLADILLNP----TFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEES 177 (438)
T ss_pred hhhhchhhhHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCCHHH
Confidence 23357888999988888877664 399999999999999999999999998888777777644343 233445789
Q ss_pred HhcCCHHHHHHHHHHhcc-CCceEEEEcCCCC
Q 011279 445 VEGVTAKDIASVAQKLLS-SPLTMASYGDVIN 475 (489)
Q Consensus 445 i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~~ 475 (489)
|+++|++|+.++.++|.. ++.+++++||+..
T Consensus 178 I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~ 209 (438)
T COG0612 178 IEAITREDLKDFYQKWYQPDNMVLVVVGDVDA 209 (438)
T ss_pred HHhCCHHHHHHHHHHhcCcCceEEEEecCCCH
Confidence 999999999999999999 8999999999854
No 24
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=97.98 E-value=0.00078 Score=72.65 Aligned_cols=177 Identities=7% Similarity=-0.024 Sum_probs=115.1
Q ss_pred ceEEecCCCCCceEEEEEeecCCCCCCCc--chHHHHHHHHhhcCCCCCCCCCCCCCcccH-HHHHHHHhCCCEEEEEEe
Q 011279 278 DYRCQADSGDQLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGGSFSAGGPGKGMYSR-LYRRVLNEFPQVQSFSAF 354 (489)
Q Consensus 278 ~~~~~~~~~~~~~~v~l~~~~~~~~~~~~--~~~~l~vl~~lL~~~~sf~~gg~gkgm~sr-L~~~lR~~~g~~y~~~a~ 354 (489)
.+.+..+...+.+.+.+.+.... .+++ ..-...++..+|..|.. .+... =+.+..+..|..++++..
T Consensus 10 rVllv~~p~~p~vav~l~v~aGS--~~Ep~~~~GLAHfLEHMLFkGT~--------~~~~~~~i~~~le~lGG~lNA~Ts 79 (696)
T TIGR02110 10 RVHLYHQPDAKRAAALLRVAAGS--HDEPSAWPGLAHFLEHLLFLGGE--------RFQGDDRLMPWVQRQGGQVNATTL 79 (696)
T ss_pred EEEEEECCCCCEEEEEEEEeecc--CCCCCCCCcHHHHHHHHHhcCCC--------CCCcHHHHHHHHHHhCCeEEEEEc
Confidence 33333333336677777777654 4442 23455677777655421 12221 244555666766554433
Q ss_pred ecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC
Q 011279 355 SNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE 434 (489)
Q Consensus 355 ~~~~~~~g~~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~ 434 (489)
.....+++.+.+++.+++++.+.+.+.+- .++++++++.|+..+..+.+..+++..++.......++.+.
T Consensus 80 ------~d~T~y~~~v~~~~l~~aL~lLaD~l~~P----~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~H 149 (696)
T TIGR02110 80 ------ERTTAFFFELPAAALAAGLARLCDMLARP----LLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGH 149 (696)
T ss_pred ------CCeEEEEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCC
Confidence 23456777788888888887777665443 49999999999999999999888888877766655543332
Q ss_pred C--CCHHHHHHHHhc---CCHHHHHHHHHHhcc-CCceEEEEcCCC
Q 011279 435 R--KPVEHFLKTVEG---VTAKDIASVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 435 ~--~~~~~~~~~i~~---vT~edI~~~a~~~l~-~~~~~~v~G~~~ 474 (489)
+ .+..--.+.|++ +|.+||+++.+++.. ++.+++++||..
T Consensus 150 Py~~~~iGt~esL~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs 195 (696)
T TIGR02110 150 PLRRFHAGSRDSLALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQS 195 (696)
T ss_pred CCCCCCCCCHHHHhCcccchHHHHHHHHHHhcchhcEEEEEEeCCC
Confidence 2 121112344444 559999999999998 899999999974
No 25
>PHA03081 putative metalloprotease; Provisional
Probab=97.64 E-value=0.00085 Score=66.69 Aligned_cols=165 Identities=21% Similarity=0.331 Sum_probs=103.4
Q ss_pred EEcCCCcEEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEeeccceEE
Q 011279 82 STLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMG 161 (489)
Q Consensus 82 ~~L~NGl~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 161 (489)
.+|+||+||...+.-...+.+++. +.|.-.+-.+-.|+|||+||.+-+ +++..+ ..|++|.+.++.
T Consensus 2 i~~~ngvr~f~~~~m~kdiy~gi~-~fgfe~di~~~lg~ahllehili~----fd~~~f---------~anast~r~yms 67 (595)
T PHA03081 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILIS----FDSSKF---------VANASTARSYMS 67 (595)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHeee----cchHHh---------cccchhhhhhHh
Confidence 479999999988877778888875 445555556678999999999742 333222 457888899988
Q ss_pred EEEEccCCCH-----HHHH---------------HHHHHHHHhhcCChhHHHHHHHH---HHhc--CCCCCCCCCCChhh
Q 011279 162 YSFDALKTYV-----PEML---------------TKVKSEISEVSNNPQSLLLEAIH---SAGY--SGALANPLLAPESA 216 (489)
Q Consensus 162 ~~~~~~~~~l-----~~~l---------------~~v~~el~~~~~~p~~~~~~~l~---~~~~--~~~~~~~~~g~~~~ 216 (489)
|-+.+.+..- .+++ ..++.-++++++. +..-++.+| -..| ++.+-+- |-.+.
T Consensus 68 fwc~sirg~~y~DAvrtliSWFF~~~~Lr~~F~~~~ik~~ikELENE-YYFRnEvfHCmDvLTfL~gGDLYNG--GRi~M 144 (595)
T PHA03081 68 FWCKSIRGRSYIDAIRTLISWFFDNGKLKDNFSLSKIRNHIKELENE-YYFRNEVFHCMDVLTFLGGGDLYNG--GRIDM 144 (595)
T ss_pred HhhHhhcCCchHHHHHHHHHHhccCCccccccchhhHHHHHHHHhhh-hhhhhhhHHHHHHHHHhcCCcccCC--chHHH
Confidence 8777765432 2222 5566666666432 222222222 2344 4444332 45566
Q ss_pred hccCCHHHHHHHHHhh---CCCCCeEEEEecCCHHHHHHHHHHhhCCCCCCCC
Q 011279 217 INRLNSTLLEEFVAEN---YTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHP 266 (489)
Q Consensus 217 l~~i~~~~l~~f~~~~---y~~~~~~l~ivGvd~~~l~~~i~~~~~~lp~~~~ 266 (489)
|++++ ++++...+. ....|+++++=-.+ +....++++.||.||.-+.
T Consensus 145 L~~l~--~i~~~L~~RM~~I~GpniVIFVk~ln-~~~l~lL~~TFGtLP~~P~ 194 (595)
T PHA03081 145 LDNLN--DVRDMLSNRMHRISGPNIVIFVKELN-PNTLSLLNNTFGTLPSCPE 194 (595)
T ss_pred HhhhH--HHHHHHHHHHHhhcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCcc
Confidence 66654 333333322 24457666655577 6678999999999997654
No 26
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=97.21 E-value=0.0073 Score=57.33 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=72.3
Q ss_pred CCCCCCCCCCCceEEEEcCCCcEEEEecCC-CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHH
Q 011279 67 PPSLPDYVEPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE 145 (489)
Q Consensus 67 p~~~~~~~~~~~~~~~~L~NGl~V~~~~~~-~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~ 145 (489)
..+++...+..++++..+ +|++|+..+.+ +..+++.++++.+...+. ...-+.-|..-+...||+++++.++...+.
T Consensus 59 ~~Di~~~~~~~~~~~~~~-~~~~v~~~~~~TnGI~Y~~l~fdl~~l~~e-~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~ 136 (248)
T PF08367_consen 59 LSDIPREIEKIPLEVEKL-GGIPVLFHEQPTNGIVYVRLYFDLSDLPEE-DLPYLPLLTDLLGELGTKNYSYEELSNEID 136 (248)
T ss_dssp GGGS-SS------EECCC-TTCEEEEEE---TTEEEEEEEEE-TTS-CC-CHCCHHHHHHHCCCS-BSSS-HHHHHHHHH
T ss_pred HHhcCCCCCCCCceeeec-CCccEEEEEcCCCCeEEEEEEecCCCCCHH-HHHhHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 344444444455555554 78999965555 459999999999865543 234455555444557999999999999999
Q ss_pred HcCCeeeEeec-----------cceEEEEEEccCCCHHHHHHHHHHHH
Q 011279 146 AIGGNVQASAS-----------REQMGYSFDALKTYVPEMLTKVKSEI 182 (489)
Q Consensus 146 ~~g~~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~~v~~el 182 (489)
.+.|++++++. .....+++.|+.++++.+++.+.+-+
T Consensus 137 ~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil 184 (248)
T PF08367_consen 137 LYTGGISFSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEIL 184 (248)
T ss_dssp HHSSEEEEEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHH
T ss_pred HhCCCeEEEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHH
Confidence 99887777653 23578899999999999994444333
No 27
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.032 Score=54.58 Aligned_cols=172 Identities=15% Similarity=0.127 Sum_probs=115.5
Q ss_pred CCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEE
Q 011279 286 GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 365 (489)
Q Consensus 286 ~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~ 365 (489)
....+.|.+.+......-+.++..+.-.|..+...|.. .|--..+-.+ +.++++....|...-.-.
T Consensus 51 ~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~-----------~Rs~~alElE---ieniGahLNAytSReqT~ 116 (467)
T KOG0960|consen 51 SASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTK-----------NRSQAALELE---IENIGAHLNAYTSREQTV 116 (467)
T ss_pred CCcceEEEEEeccCccccccccccHHHHHHHHHhcCCC-----------cchhHHHHHH---HHHHHHHhccccccccee
Confidence 33677787777665533356777788888885443211 3322222211 122333333343333455
Q ss_pred EEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCC--CHHHHHH
Q 011279 366 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK--PVEHFLK 443 (489)
Q Consensus 366 i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~--~~~~~~~ 443 (489)
.|+.|-+++++++++.+.+.+.+- .+.+.++++-+.-++.......++-....-++.+...+.|.+. +..--.+
T Consensus 117 yyakal~~dv~kavdiLaDIlqns----~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~e 192 (467)
T KOG0960|consen 117 YYAKALSKDVPKAVDILADILQNS----KLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPSE 192 (467)
T ss_pred eehhhccccchHHHHHHHHHHHhC----ccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChhh
Confidence 677888999999999999877664 3889999999999888877655555545455555555566653 3455678
Q ss_pred HHhcCCHHHHHHHHHHhcc-CCceEEEEcCCCC
Q 011279 444 TVEGVTAKDIASVAQKLLS-SPLTMASYGDVIN 475 (489)
Q Consensus 444 ~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~~ 475 (489)
.|++|+.+|++++++.... .+++++..|.++.
T Consensus 193 nI~si~r~DL~~yi~thY~~~RmVlaaaGgV~H 225 (467)
T KOG0960|consen 193 NIKSISRADLKDYINTHYKASRMVLAAAGGVKH 225 (467)
T ss_pred hhhhhhHHHHHHHHHhcccCccEEEEecCCcCH
Confidence 9999999999999999888 8899999997754
No 28
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=96.55 E-value=0.23 Score=42.82 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=85.8
Q ss_pred CCceEEEEEeecCCCCCCCcc--hHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceE
Q 011279 287 DQLTHFVLAFELPGGWHKDKD--AMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 364 (489)
Q Consensus 287 ~~~~~v~l~~~~~~~~~~~~~--~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~ 364 (489)
.+.+.+.+.|.+.. ..++. .-...++..++..+. +++.+.=+.+..++.|..+++... ....
T Consensus 10 ~~~~~~~l~~~~Gs--~~e~~~~~G~a~ll~~l~~~gs--------~~~~~~~l~~~l~~~G~~~~~~t~------~d~t 73 (149)
T PF00675_consen 10 SPVVSVSLVFKAGS--RYEPPGKPGLAHLLEHLLFRGS--------KKYSSDELQEELESLGASFNASTS------RDST 73 (149)
T ss_dssp SSEEEEEEEES-SG--GGSCTTTTTHHHHHHHHTTSBB--------SSSBHHHHHHHHHHTTCEEEEEEE------SSEE
T ss_pred CCEEEEEEEEeecc--CCCCCCCCchhhhhhhhccccc--------chhhhhhhHHHhhhhccccceEec------ccce
Confidence 37788888887764 44332 355667777666442 123233344555667877765544 3457
Q ss_pred EEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC
Q 011279 365 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE 434 (489)
Q Consensus 365 ~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~ 434 (489)
.+++.+.+++.+++++.+.+.+.+- .++++++++.|..++..+....+++...+....+..+..+.
T Consensus 74 ~~~~~~~~~~~~~~l~~l~~~~~~P----~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~ 139 (149)
T PF00675_consen 74 SYSASVLSEDLEKALELLADMLFNP----SFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGH 139 (149)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHSB----GGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTS
T ss_pred EEEEEEecccchhHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccC
Confidence 7788888889888888888776554 39999999999999999988877776666655555554433
No 29
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.11 Score=51.21 Aligned_cols=120 Identities=11% Similarity=0.156 Sum_probs=83.9
Q ss_pred HHhCCCEEEEEEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHH
Q 011279 342 LNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVV 421 (489)
Q Consensus 342 R~~~g~~y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~ 421 (489)
.|+.|+.|.|.+.-. .++-.+++..+.++.+++++.+.+.+ + .++++|++.+|...+-.+..-...+..+
T Consensus 90 LE~~GGn~~cqsSRe------tm~Yaas~~~~~v~sm~~lLadtV~~---P-~~~d~ev~~~~~~v~~E~~el~~~Pe~l 159 (472)
T KOG2067|consen 90 LEKLGGNCDCQSSRE------TMMYAASADSDGVDSMVELLADTVLN---P-KFTDQEVEEARRAVKYEIEELWMRPEPL 159 (472)
T ss_pred HHHhCCcccccccHh------hhHHHHHhhhcccHHHHHHHHHHHhc---c-cccHHHHHHHHHhhhheccccccCchhh
Confidence 466788888877522 23334556667788888877766544 3 3999999999998877766655566666
Q ss_pred HHHHHHHHHHcCCCCCHHHH--HHHHhcCCHHHHHHHHHHhcc-CCceEEEEc
Q 011279 422 SEDIGRQVLTYGERKPVEHF--LKTVEGVTAKDIASVAQKLLS-SPLTMASYG 471 (489)
Q Consensus 422 ~~~i~~~~~~~g~~~~~~~~--~~~i~~vT~edI~~~a~~~l~-~~~~~~v~G 471 (489)
.-++.+...+.+...-.-.+ .+.|++|+.+.+.++.+.+.. ++.+++.+|
T Consensus 160 L~e~iH~Aay~~ntlg~pl~cp~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vG 212 (472)
T KOG2067|consen 160 LTEMIHSAAYSGNTLGLPLLCPEENIDKINREVLEEYLKYFYTPERMVLAGVG 212 (472)
T ss_pred HHHHHHHHHhccCcccccccCChhhhhhhhHHHHHHHHHhcCChhheEeeecC
Confidence 66666665544433222233 578999999999999999888 778877776
No 30
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=81.22 E-value=2.3 Score=25.90 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=20.9
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011279 383 ARELISVATPGEVDQVQLDRAKQSTK 408 (489)
Q Consensus 383 ~~el~~l~~~g~it~~eL~~aK~~l~ 408 (489)
.+.+..+...|.||++|+++.|+.++
T Consensus 5 L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 45566777778899999999998865
No 31
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=70.90 E-value=94 Score=29.24 Aligned_cols=116 Identities=18% Similarity=0.195 Sum_probs=71.3
Q ss_pred CceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCC-EEEEEEeeccc---CCcce
Q 011279 288 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQ-VQSFSAFSNIY---NHSGM 363 (489)
Q Consensus 288 ~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~-~y~~~a~~~~~---~~~g~ 363 (489)
.-+++.+.|..+. .+.++..-+.++..+|+.-|. ... =+..|-..+...-|+ ..++....... .-...
T Consensus 90 GI~Y~~l~fdl~~--l~~e~l~yl~Ll~~ll~~lgT-----~~~-sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~ 161 (248)
T PF08367_consen 90 GIVYVRLYFDLSD--LPEEDLPYLPLLTDLLGELGT-----KNY-SYEELSNEIDLYTGGISFSIEVYTDYDDDDKYRPY 161 (248)
T ss_dssp TEEEEEEEEE-TT--S-CCCHCCHHHHHHHCCCS-B-----SSS--HHHHHHHHHHHSSEEEEEEEEEEEECTECCCEEE
T ss_pred CeEEEEEEecCCC--CCHHHHHhHHHHHHHHHhCCC-----CCC-CHHHHHHHHHHhCCCeEEEeeeccCCCCccceeEE
Confidence 6789999999987 677788889999999986532 222 234455555555443 33333333321 12356
Q ss_pred EEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHHHHHhc
Q 011279 364 FGIQGTTGSDFVSKAIDLAARELISVATPGEVDQV-QLDRAKQSTKSAILMNL 415 (489)
Q Consensus 364 ~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~-eL~~aK~~l~~~~~~~~ 415 (489)
|.|.+.|-.++++++++.+.+.+.+. .+++. .|.....+.++.+..++
T Consensus 162 l~is~k~L~~~~~~~~~ll~eil~~~----~f~d~~rl~~ll~~~~s~~~~~i 210 (248)
T PF08367_consen 162 LVISAKCLDEKLDEAFELLSEILTET----DFDDKERLKELLKELKSDMESSI 210 (248)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHCB-----TT-HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeHhhhHHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHHHHHHhh
Confidence 88888899999999999998888665 26654 44444444444444433
No 32
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=67.54 E-value=39 Score=33.60 Aligned_cols=171 Identities=20% Similarity=0.251 Sum_probs=90.0
Q ss_pred HHHHHHHhhcCCCCC--------CCCCCCCCcccHHHHHHHHhCC----CEEEEEEeecccCC------cceEEE-EEEe
Q 011279 310 TLTVLQMLLGGGGSF--------SAGGPGKGMYSRLYRRVLNEFP----QVQSFSAFSNIYNH------SGMFGI-QGTT 370 (489)
Q Consensus 310 ~l~vl~~lL~~~~sf--------~~gg~gkgm~srL~~~lR~~~g----~~y~~~a~~~~~~~------~g~~~i-~~~~ 370 (489)
.++++..=..+-.|| -|||-|.||.|.|.++|++++. ..|+|........+ ..++.+ ...-
T Consensus 118 ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~ 197 (448)
T KOG1374|consen 118 IMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTE 197 (448)
T ss_pred HHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhh
Confidence 456666666666666 5899999999999999999765 46777554311111 011111 0111
Q ss_pred Cccc----HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-----------cCC-
Q 011279 371 GSDF----VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLT-----------YGE- 434 (489)
Q Consensus 371 ~p~~----~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~-----------~g~- 434 (489)
+++. -..++..+....-++. .+|=.++.......++.-...+..+.+.-..+..-+.. .+.
T Consensus 198 nsD~vVVlDN~AL~ria~~~l~i~---~ptF~~iNqLvstims~st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~t 274 (448)
T KOG1374|consen 198 NSDCVVVLDNTALHRIAADRLHIQ---NPTFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYT 274 (448)
T ss_pred CCCeEEEeccHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhhccccccchhhccCcHHHHHhhcCCCCCeeeeeccCC
Confidence 1111 1223333333322332 36666666665555555555555555554444422211 111
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHhccCCceEEEEcC-CCCCCCHHHHHHH
Q 011279 435 RKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGD-VINVPSYDAVSSK 485 (489)
Q Consensus 435 ~~~~~~~~~~i~~vT~edI~~~a~~~l~~~~~~~v~G~-~~~lp~~~~~~~~ 485 (489)
+..-+...+. +++...+-++.+++|..+-.++..++ ....|.|-.|...
T Consensus 275 P~~sd~~~~~--~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~si~n~ 324 (448)
T KOG1374|consen 275 PLTSDNSLAT--AVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYISILNI 324 (448)
T ss_pred cccChhhhhh--hhhcchHHHHHHHHhCcchhhhhccccccCCcchHhHHhh
Confidence 1111222222 56777778888899984444445544 6677777666543
No 33
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=63.60 E-value=1.7e+02 Score=29.50 Aligned_cols=168 Identities=11% Similarity=0.111 Sum_probs=91.1
Q ss_pred cCCCCCceEEEEEeecCCCCCCCcch--HHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCC
Q 011279 283 ADSGDQLTHFVLAFELPGGWHKDKDA--MTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNH 360 (489)
Q Consensus 283 ~~~~~~~~~v~l~~~~~~~~~~~~~~--~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~ 360 (489)
.+.+.+-+++.+.|.... +-.+.. -..-+|...-+... ++ ..=++-+|+-.... .......+
T Consensus 37 ~e~~~~is~l~l~~~AGS--RYe~~~~~G~sHllr~f~g~~T--------q~--~sal~ivr~se~~G----G~Lss~~t 100 (429)
T KOG2583|consen 37 REAPTAISSLSLAFRAGS--RYEPADQQGLSHLLRNFVGRDT--------QE--RSALKIVRESEQLG----GTLSSTAT 100 (429)
T ss_pred ccCCCcceEEEEEEecCc--cCCccccccHHHHHHHhcccCc--------cc--cchhhhhhhhHhhC----ceeeeeee
Confidence 344448899999998865 433322 22223332222110 00 11123345432211 11122234
Q ss_pred cceEEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH-HHHHHHHHhcCChHHHH-HHHHHHHHHcCCCCCH
Q 011279 361 SGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQ-STKSAILMNLESRMVVS-EDIGRQVLTYGERKPV 438 (489)
Q Consensus 361 ~g~~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~-~l~~~~~~~~es~~~~~-~~i~~~~~~~g~~~~~ 438 (489)
.-+|++.+.+.-++.+-.+.. |.++.....|-+.||+..+- .+... ...+++...+ +++-..-...|.-.+
T Consensus 101 Re~~~~tvt~lrd~~~~~l~~----L~~V~~~paFkPwEl~D~~~~ti~~~--l~~~t~~~~a~e~lH~aAfRngLgns- 173 (429)
T KOG2583|consen 101 RELIGLTVTFLRDDLEYYLSL----LGDVLDAPAFKPWELEDVVLATIDAD--LAYQTPYTIAIEQLHAAAFRNGLGNS- 173 (429)
T ss_pred cceEEEEEEEecccHHHHHHH----HHHhhcccCcCchhhhhhhhhhhHHH--hhhcChHHHHHHHHHHHHHhcccCCc-
Confidence 567888888887777555444 44554442388888888773 33332 2344554444 444333322332222
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHhcc-CCceEEEEcCCC
Q 011279 439 EHFL--KTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 439 ~~~~--~~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~ 474 (489)
-|. -.+.+++.+||..++.+.|. .+..++-+|...
T Consensus 174 -lY~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd~ 211 (429)
T KOG2583|consen 174 -LYSPGYQVGSVSSSELKDFAAKHFVKGNAVLVGVNVDH 211 (429)
T ss_pred -ccCCcccccCccHHHHHHHHHHHhhccceEEEecCCCh
Confidence 233 36999999999999999888 788877777553
No 34
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=46.57 E-value=1.1e+02 Score=23.74 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=44.1
Q ss_pred cccHHHHHHHHHHHHHHhh---CCC-CCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC-CCCHHHHHHHHh
Q 011279 372 SDFVSKAIDLAARELISVA---TPG-EVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE-RKPVEHFLKTVE 446 (489)
Q Consensus 372 p~~~~~~i~~~~~el~~l~---~~g-~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~-~~~~~~~~~~i~ 446 (489)
|...++++..+.+.+.... .+| .|+.+||..+-............+... .+.+.+.+=..++ ..+.++++..+.
T Consensus 2 ~~~le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~-v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 2 PTQLEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPML-VDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHH-HHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 4567888888888887776 234 389999987655433332222223333 3334444321222 356777877776
Q ss_pred cCC
Q 011279 447 GVT 449 (489)
Q Consensus 447 ~vT 449 (489)
.++
T Consensus 81 ~l~ 83 (93)
T cd05026 81 ALT 83 (93)
T ss_pred HHH
Confidence 653
No 35
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=43.54 E-value=1.4e+02 Score=23.11 Aligned_cols=76 Identities=9% Similarity=0.169 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHHH-hhCCC---CCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC-CCCHHHHHHHHhcC
Q 011279 374 FVSKAIDLAARELIS-VATPG---EVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE-RKPVEHFLKTVEGV 448 (489)
Q Consensus 374 ~~~~~i~~~~~el~~-l~~~g---~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~-~~~~~~~~~~i~~v 448 (489)
..++++..+...+.. ...+| .++.+||...-......+.....+...+-+ +...+=..++ ....++++..+..+
T Consensus 3 ~le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~-ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 3 ETERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDR-MMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHH-HHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 367777778887777 32322 499999988877665555443333333333 3333211222 35678888877766
Q ss_pred CH
Q 011279 449 TA 450 (489)
Q Consensus 449 T~ 450 (489)
+.
T Consensus 82 ~~ 83 (89)
T cd05023 82 AV 83 (89)
T ss_pred HH
Confidence 43
No 36
>COG5023 Tubulin [Cytoskeleton]
Probab=37.83 E-value=4.3e+02 Score=26.56 Aligned_cols=151 Identities=17% Similarity=0.127 Sum_probs=78.7
Q ss_pred CCCCCCCCcccHHHHHHHHhCC----CEEEEEEee-------cccCCcceEEEEEEeCcccHHHH--HHHHHHHHH-Hhh
Q 011279 325 SAGGPGKGMYSRLYRRVLNEFP----QVQSFSAFS-------NIYNHSGMFGIQGTTGSDFVSKA--IDLAARELI-SVA 390 (489)
Q Consensus 325 ~~gg~gkgm~srL~~~lR~~~g----~~y~~~a~~-------~~~~~~g~~~i~~~~~p~~~~~~--i~~~~~el~-~l~ 390 (489)
=+||-|.||.+-|..+|+++++ ..|+|.-.. .+|+ ..+.++...+-.+..-+ -+.+...-. .+.
T Consensus 139 ~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p~~Sd~VVePYN--svLt~h~l~ensD~tf~~DNeal~di~~~~L~ 216 (443)
T COG5023 139 LGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYN--SVLTLHRLLENSDCTFVVDNEALYDICRRNLR 216 (443)
T ss_pred ccCcCcccHHHHHHHHHHHhcchhheeEEEeccCCccCcceecccH--HHHHHHHHHhcCCceEEechHHHHHHHHHhcC
Confidence 3688999999999999999877 456664311 1221 11111111100000000 012222222 333
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCH------------HHHHHHHhcCCHHHHHHHHH
Q 011279 391 TPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPV------------EHFLKTVEGVTAKDIASVAQ 458 (489)
Q Consensus 391 ~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~------------~~~~~~i~~vT~edI~~~a~ 458 (489)
.+ .++=+++.+...+..+....++.-+.++-.++..... +--+-+. ..--...++.|..| +.+
T Consensus 217 i~-~P~y~~lN~LIs~VmSsvTtslRfpG~ln~dl~~~~~-nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~e---vt~ 291 (443)
T COG5023 217 IQ-NPSYDDLNQLISTVMSSVTTSLRFPGYLNVDLRSIQT-NLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSE---VTN 291 (443)
T ss_pred CC-CCChHHHHHHHHHHHHhhhheeecCccccchHHHHHh-cCCCCCcccccccccCcccchhhHHHhcccHHH---HHH
Confidence 33 4888999999999999988888777776665554322 2111111 22334566666555 456
Q ss_pred HhccCCceEEEEcCCCCCCCHHHHHH
Q 011279 459 KLLSSPLTMASYGDVINVPSYDAVSS 484 (489)
Q Consensus 459 ~~l~~~~~~~v~G~~~~lp~~~~~~~ 484 (489)
++|..+-.++..-+ +-+.|-.+..
T Consensus 292 ~~f~p~N~mv~~dp--r~g~y~~~~~ 315 (443)
T COG5023 292 QLFDPKNQMVSCDP--RKGRYMAVCL 315 (443)
T ss_pred HHhCcccceeeecC--CCCeeeehhH
Confidence 67773333344433 3344444433
No 37
>PRK11032 hypothetical protein; Provisional
Probab=32.67 E-value=80 Score=27.59 Aligned_cols=37 Identities=8% Similarity=0.163 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 011279 374 FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM 413 (489)
Q Consensus 374 ~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~ 413 (489)
.+.++++.+.+.+.... .+|++|++.+++.++..+..
T Consensus 25 ~l~~~ve~a~~~~~~~~---elT~dEl~lv~~ylkRDL~e 61 (160)
T PRK11032 25 DIDALVESARKRVDAAG---ELTRDEVDLITRAVRRDLEE 61 (160)
T ss_pred HHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHH
Confidence 37777777777766654 49999999999999887755
No 38
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=30.42 E-value=3.4e+02 Score=22.99 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=56.7
Q ss_pred EEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHH-HcCC--eeeEeec----cceEE
Q 011279 89 KIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE-AIGG--NVQASAS----REQMG 161 (489)
Q Consensus 89 ~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~-~~g~--~~~~~~~----~~~~~ 161 (489)
.+.....+.+...+.+.+.+..... ........++.+++..+ ....|...+. ..+. .++++.. .....
T Consensus 69 ~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~l~~~l~~~----~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~ 143 (184)
T PF05193_consen 69 EIVIPSKDESQSIVSIAFPGPPIKD-SKDYFALNLLSSLLGNG----MSSRLFQELREKQGLAYSVSASNSSYRDSGLFS 143 (184)
T ss_dssp EEEEEESSSSSEEEEEEEEEEETGT-STTHHHHHHHHHHHHCS----TTSHHHHHHHTTTTSESEEEEEEEEESSEEEEE
T ss_pred ccccccccccccccccccccccccc-cchhhHHHHHHHHHhcC----ccchhHHHHHhccccceEEEeeeeccccceEEE
Confidence 3444444446666666666655522 23556777888887654 3445666666 4443 3333322 24466
Q ss_pred EEEEccCCCHHHHHHHHHHHHHhhcC
Q 011279 162 YSFDALKTYVPEMLTKVKSEISEVSN 187 (489)
Q Consensus 162 ~~~~~~~~~l~~~l~~v~~el~~~~~ 187 (489)
+.+.+.+++++.+++.+.++++....
T Consensus 144 i~~~~~~~~~~~~~~~~~~~l~~l~~ 169 (184)
T PF05193_consen 144 ISFQVTPENLDEAIEAILQELKRLRE 169 (184)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCcccHHHHHHHHHHHHHHHHH
Confidence 77777777999999888888876643
No 39
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=28.65 E-value=2.7e+02 Score=21.38 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH--cCCCCCHHHHHHHHhcCCHHHHHHH
Q 011279 380 DLAARELISVATP-GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLT--YGERKPVEHFLKTVEGVTAKDIASV 456 (489)
Q Consensus 380 ~~~~~el~~l~~~-g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~--~g~~~~~~~~~~~i~~vT~edI~~~ 456 (489)
..+-.....+... | +++.++++++...- .+.......+...+.. .+.......+.+.+.++...|+.+-
T Consensus 10 ~~LG~~Wk~lar~LG-lse~~Id~Ie~~~~-------~dl~eq~~~mL~~W~~~~~~~~atv~~L~~AL~~~gr~dlae~ 81 (86)
T cd08779 10 GRLGLDWQAIGLHLG-LSYRELQRIKYNNR-------DDLDEQIFDMLFSWAQRQAGDPDAVGKLVTALEESGRQDLADE 81 (86)
T ss_pred HHHhHHHHHHHHHcC-CCHHHHHHHHHHCc-------cCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCHHHHHHH
Confidence 3333344444332 5 99999999987632 1222222333333322 2333456788999999999999887
Q ss_pred HHHh
Q 011279 457 AQKL 460 (489)
Q Consensus 457 a~~~ 460 (489)
.+..
T Consensus 82 l~~~ 85 (86)
T cd08779 82 VRAV 85 (86)
T ss_pred HHhh
Confidence 7654
No 40
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=27.15 E-value=2.1e+02 Score=21.79 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=23.4
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 011279 382 AARELISVATPGEVDQVQLDRAKQSTKSAILM 413 (489)
Q Consensus 382 ~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~ 413 (489)
-+.++......|.||++++++....++..+..
T Consensus 36 ~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~ 67 (79)
T PF05120_consen 36 ELAELQEALEAGEISEEEFERREDELLDRLEE 67 (79)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 33344444555789999999999998887754
No 41
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=23.60 E-value=1.6e+02 Score=24.87 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=34.3
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHhcc--CCceEEEEcCCCCCC
Q 011279 437 PVEHFLKTVEGVTAKDIASVAQKLLS--SPLTMASYGDVINVP 477 (489)
Q Consensus 437 ~~~~~~~~i~~vT~edI~~~a~~~l~--~~~~~~v~G~~~~lp 477 (489)
++.++...+.-++.+++++.+.++|. ++-++...|...-.|
T Consensus 2 YpsdFAs~L~vLsL~e~r~aIh~LLd~Rd~~~WMLFGTLPfy~ 44 (153)
T PF08756_consen 2 YPSDFASNLEVLSLDEMREAIHRLLDIRDPNVWMLFGTLPFYP 44 (153)
T ss_pred chhHhhhhCccCCHHHHHHHHHHHHhccCCCeeEEeccccccc
Confidence 35678888999999999999999999 678888899876443
No 42
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=23.30 E-value=2.7e+02 Score=25.05 Aligned_cols=76 Identities=11% Similarity=0.075 Sum_probs=48.6
Q ss_pred HHHHHhCCCEEEEEEeecc---------cCCcceEEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 011279 339 RRVLNEFPQVQSFSAFSNI---------YNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKS 409 (489)
Q Consensus 339 ~~lR~~~g~~y~~~a~~~~---------~~~~g~~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~ 409 (489)
.+||.-+.+.|+.+-++.+ +.+..+|-+.-+.+....+.+...+.+.-..+.... +-...|+.-|..+..
T Consensus 41 tElRTtyNGsYGASLlF~~~eltYYVALfq~k~fWRViKt~d~~~AE~~Y~~F~~Qt~~LA~~e-irR~~LeAQka~~eR 119 (192)
T PF11180_consen 41 TELRTTYNGSYGASLLFYPKELTYYVALFQQKAFWRVIKTQDEARAEAIYRDFAQQTARLADVE-IRRAQLEAQKAQLER 119 (192)
T ss_pred hhhhhhccCCccceeeecCCcceeeeeeeecCceeEeeecCChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 5899999999998875543 235556677666777777777777777666665432 444555555555555
Q ss_pred HHHHhc
Q 011279 410 AILMNL 415 (489)
Q Consensus 410 ~~~~~~ 415 (489)
.+..+.
T Consensus 120 ~ia~~~ 125 (192)
T PF11180_consen 120 LIAESE 125 (192)
T ss_pred HHHHHH
Confidence 554443
No 43
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=22.91 E-value=6.8e+02 Score=25.22 Aligned_cols=42 Identities=10% Similarity=0.234 Sum_probs=29.3
Q ss_pred CCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEEEeCccc
Q 011279 329 PGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDF 374 (489)
Q Consensus 329 ~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~~~~p~~ 374 (489)
-|.||..++..+||+-..++.-|.+|-. .....+....+|-.
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~d----~di~hv~~~vDP~~ 124 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFGD----TDIEHVEGKVDPVE 124 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecCC----CcccCCCCCcCcHH
Confidence 4677889999999998888888888744 22333444467653
No 44
>PF14659 Phage_int_SAM_3: Phage integrase, N-terminal SAM-like domain; PDB: 2KD1_A 2KOB_A 2KHQ_A 3LYS_E 2KIW_A 2KKP_A.
Probab=22.44 E-value=71 Score=21.81 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=12.2
Q ss_pred HhcCCHHHHHHHHHHhc
Q 011279 445 VEGVTAKDIASVAQKLL 461 (489)
Q Consensus 445 i~~vT~edI~~~a~~~l 461 (489)
|++||+.+|+++.++++
T Consensus 42 i~~It~~~i~~~~~~l~ 58 (58)
T PF14659_consen 42 IKDITPRDIQNFINELL 58 (58)
T ss_dssp GGG--HHHHHHHHHHH-
T ss_pred HHHCCHHHHHHHHHHcC
Confidence 77899999999988864
No 45
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=21.42 E-value=8.9e+02 Score=24.79 Aligned_cols=119 Identities=9% Similarity=0.067 Sum_probs=64.1
Q ss_pred EEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCH---HH
Q 011279 364 FGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPV---EH 440 (489)
Q Consensus 364 ~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~---~~ 440 (489)
+++.+...|-..+..+..+.+..... .- .++++-++..-.. +..++.+.......+.......+...+. .+
T Consensus 235 ~Gl~~~I~~Pd~e~r~aiL~kka~~~-~~-~i~~ev~~~la~~----~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e 308 (408)
T COG0593 235 WGLVVEIEPPDDETRLAILRKKAEDR-GI-EIPDEVLEFLAKR----LDRNVRELEGALNRLDAFALFTKRAITIDLVKE 308 (408)
T ss_pred ceeEEeeCCCCHHHHHHHHHHHHHhc-CC-CCCHHHHHHHHHH----hhccHHHHHHHHHHHHHHHHhcCccCcHHHHHH
Confidence 45555555555555556555532222 21 3666555544333 3344444445555555554444443332 22
Q ss_pred HH-HHHh---cCCHHHHHHHHHHhcc-CCceEEEEcCCCCCCCHHHHHHHhhc
Q 011279 441 FL-KTVE---GVTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFKS 488 (489)
Q Consensus 441 ~~-~~i~---~vT~edI~~~a~~~l~-~~~~~~v~G~~~~lp~~~~~~~~~~~ 488 (489)
.+ +.+. ++|+++|++.+.+|+. +.--+..-.-...+-...+|+-+|.+
T Consensus 309 ~L~~~~~~~~~itie~I~~~Va~~y~v~~~dl~s~~R~~~i~~~RqiamyL~r 361 (408)
T COG0593 309 ILKDLLRAGEKITIEDIQKIVAEYYNVKVSDLLSKSRTRNIVRPRQIAMYLAR 361 (408)
T ss_pred HHHHhhcccccCCHHHHHHHHHHHhCCCHHHhhccccccccchHHHHHHHHHH
Confidence 21 2222 2999999999999998 54444455555566666776666543
No 46
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=20.96 E-value=5.2e+02 Score=22.63 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHcCCCCCHHH------HHHHHh-----------------cCCHHHH
Q 011279 398 VQLDRAKQSTKSAILMNLESRMV-VSEDIGRQVLTYGERKPVEH------FLKTVE-----------------GVTAKDI 453 (489)
Q Consensus 398 ~eL~~aK~~l~~~~~~~~es~~~-~~~~i~~~~~~~g~~~~~~~------~~~~i~-----------------~vT~edI 453 (489)
..+++.+..++-.+...+..... ....+..+++ .|...+..+ |+..-. .||+|||
T Consensus 44 ~~~dk~~g~LLy~lAtk~k~~~~~~r~~iv~~I~-~gklkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGVGV~VT~E~I 122 (164)
T PF04558_consen 44 SGCDKKQGNLLYQLATKLKPQALPHRPFIVKYIV-DGKLKTNLQLDAALKYLKSNPSEPIDVAEFEKACGVGVVVTPEQI 122 (164)
T ss_dssp ----HHHHHHHHHHHHHHTT---TTHHHHHHHHH-TTS--SHHHHHHHHHHHHHHGG-G--HHHHHHTTTTT----HHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHH-hCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHcCCCeEECHHHH
Confidence 56777788887777665543331 1123344443 554433222 222211 5899999
Q ss_pred HHHHHHhcc
Q 011279 454 ASVAQKLLS 462 (489)
Q Consensus 454 ~~~a~~~l~ 462 (489)
.+.+.+|+.
T Consensus 123 ~~~V~~~i~ 131 (164)
T PF04558_consen 123 EAAVEKYIE 131 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999987
No 47
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=20.73 E-value=2.7e+02 Score=23.97 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 011279 372 SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLE 416 (489)
Q Consensus 372 p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~e 416 (489)
+..+.++++.+.+.+.... .+|++|++.++..++..+..-.+
T Consensus 13 ~~~L~~~le~a~e~~~~~~---elT~eEl~lv~~ylkRDl~~~a~ 54 (146)
T PF07295_consen 13 EEELQEALEKAKEYLVAAG---ELTREELALVSAYLKRDLEEFAR 54 (146)
T ss_pred HHHHHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777776654 49999999999999888765433
No 48
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=20.61 E-value=2.9e+02 Score=20.33 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCeeeEeeccceEEEEEEccCCCHHH-HHHHHHHHHHhh
Q 011279 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPE-MLTKVKSEISEV 185 (489)
Q Consensus 138 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~v~~el~~~ 185 (489)
.++...++..|.+++...+.+ ..+++.+...+++. .++.+..|++..
T Consensus 19 ~~If~~la~~~I~vd~I~~s~-~~isftv~~~~~~~~~l~~l~~el~~~ 66 (73)
T cd04934 19 ARIFAILDKYRLSVDLISTSE-VHVSMALHMENAEDTNLDAAVKDLQKL 66 (73)
T ss_pred HHHHHHHHHcCCcEEEEEeCC-CEEEEEEehhhcChHHHHHHHHHHHHh
Confidence 456777899999988876544 77888887777654 777777777653
No 49
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.60 E-value=4.3e+02 Score=20.79 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCHHHHHHHHHHhcc
Q 011279 392 PGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLS 462 (489)
Q Consensus 392 ~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~~~i~~vT~edI~~~a~~~l~ 462 (489)
-| +++.+++.++..- ..+.....+.+-......|...+...+++.+.++...++.+-++..+.
T Consensus 29 LG-Lse~~I~~i~~~~-------~~~~eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 29 LG-LSENEIDVAKANE-------RVTREQLYQMLLTWVNKTGRKASVNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred cC-CCHHHHHHHHHHC-------CCCHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 37 9999999998762 122222223233333346666778899999998888887777765543
No 50
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=20.59 E-value=2.6e+02 Score=19.30 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCeeeEeeccceEEEEEEccCCCHHHHHHHHHHHH
Q 011279 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMLTKVKSEI 182 (489)
Q Consensus 138 ~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~v~~el 182 (489)
.++.+.++..+.++...+..+ ..+++.....+.+..++.+..++
T Consensus 18 ~~if~~l~~~~i~v~~i~t~~-~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 18 RKIFEILEKHGISVDLIPTSE-NSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred HHHHHHHHHcCCeEEEEecCC-CEEEEEEehhhhhHHHHHHHHhh
Confidence 456777899999888876543 56666666666666665555554
No 51
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=20.54 E-value=3.6e+02 Score=19.84 Aligned_cols=60 Identities=10% Similarity=0.282 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-cCCCCCHHHHHHHHhcCCHHHHHHHHHHhc
Q 011279 393 GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLT-YGERKPVEHFLKTVEGVTAKDIASVAQKLL 461 (489)
Q Consensus 393 g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~-~g~~~~~~~~~~~i~~vT~edI~~~a~~~l 461 (489)
| +++.+++..+... .. .......+...+.. .+...+...+.+.+..+...|+.+.++.++
T Consensus 23 g-~~~~~i~~i~~~~-------~~-~~~~~~~~L~~W~~~~~~~at~~~L~~aL~~~~~~d~~~~i~~~~ 83 (83)
T PF00531_consen 23 G-LSESEIENIEEEN-------PD-LREQTYEMLQRWRQREGPNATVDQLIQALRDIGRNDLAEKIEQML 83 (83)
T ss_dssp T-S-HHHHHHHHHHS-------TS-HHHHHHHHHHHHHHHHGSTSSHHHHHHHHHHTTHHHHHHHHHHH-
T ss_pred C-cCHHHHHHHHHhC-------CC-hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHCCcHHHHHHHHhhC
Confidence 5 9999998887731 11 22233333333332 356678899999999999999999888764
No 52
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=20.12 E-value=6.3e+02 Score=25.59 Aligned_cols=116 Identities=10% Similarity=0.056 Sum_probs=59.2
Q ss_pred EEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCH---HHHH
Q 011279 366 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPV---EHFL 442 (489)
Q Consensus 366 i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~---~~~~ 442 (489)
+.+...|-+.+.....+.+.+... . ..++++.++..-...... ..........+.......+...+. .+.+
T Consensus 261 ~~v~i~~pd~~~r~~il~~~~~~~-~-~~l~~e~l~~ia~~~~~~----~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L 334 (405)
T TIGR00362 261 LVVDIEPPDLETRLAILQKKAEEE-G-LELPDEVLEFIAKNIRSN----VRELEGALNRLLAYASLTGKPITLELAKEAL 334 (405)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 444445545555566666555543 2 247777666554332221 111222333333333234444343 2222
Q ss_pred HHH-----hcCCHHHHHHHHHHhcc-CCceEEEEcCCCCCCCHHHHHHHhh
Q 011279 443 KTV-----EGVTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFK 487 (489)
Q Consensus 443 ~~i-----~~vT~edI~~~a~~~l~-~~~~~~v~G~~~~lp~~~~~~~~~~ 487 (489)
..+ ..+|+++|.+++.+++. +.--+..-+-...+....+|+-++.
T Consensus 335 ~~~~~~~~~~it~~~I~~~Va~~~~v~~~~l~~~~r~~~~~~~R~~amyl~ 385 (405)
T TIGR00362 335 KDLLRAKKKEITIENIQEVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLA 385 (405)
T ss_pred HHhccccCCCCCHHHHHHHHHHHcCCCHHHHhCCCCCcccchHHHHHHHHH
Confidence 222 35899999999999998 5444444444445655666655544
Done!