Query 011279
Match_columns 489
No_of_seqs 252 out of 1648
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 04:51:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hr6_A Alpha-MPP, mitochondria 100.0 6E-62 2.1E-66 507.1 50.4 408 77-487 4-451 (475)
2 3hdi_A Processing protease; CA 100.0 8.2E-57 2.8E-61 461.0 46.6 385 79-480 2-411 (421)
3 1hr6_B Beta-MPP, mitochondrial 100.0 1.3E-56 4.6E-61 462.4 48.1 407 75-487 3-442 (443)
4 1pp9_A Ubiquinol-cytochrome C 100.0 1.4E-56 4.6E-61 463.0 47.4 402 77-487 12-442 (446)
5 3eoq_A Putative zinc protease; 100.0 1.5E-56 5E-61 457.1 45.5 379 79-474 2-405 (406)
6 1pp9_B Ubiquinol-cytochrome C 100.0 1.1E-54 3.7E-59 447.4 50.0 399 75-482 20-439 (439)
7 3ami_A Zinc peptidase; alpha/b 100.0 1.9E-54 6.6E-59 446.7 43.3 396 77-486 5-435 (445)
8 3gwb_A Peptidase M16 inactive 100.0 4.6E-52 1.6E-56 427.1 42.4 388 77-480 12-428 (434)
9 3cx5_A Cytochrome B-C1 complex 100.0 2.9E-51 9.8E-56 420.7 41.8 392 80-487 2-427 (431)
10 3amj_B Zinc peptidase inactive 100.0 4.6E-51 1.6E-55 418.5 42.7 384 77-478 2-419 (424)
11 3d3y_A Uncharacterized protein 100.0 4.3E-45 1.5E-49 373.9 40.8 370 82-474 6-423 (425)
12 3go9_A Insulinase family prote 100.0 1.1E-45 3.8E-50 385.5 36.7 383 77-486 24-461 (492)
13 1q2l_A Protease III; hydrolase 100.0 9.2E-45 3.1E-49 407.7 40.5 386 75-475 17-441 (939)
14 3cww_A Insulysin, insulin-degr 100.0 1.5E-41 5E-46 383.6 34.6 385 75-474 31-456 (990)
15 2fge_A Atprep2;, zinc metallop 100.0 3.3E-41 1.1E-45 380.8 35.1 382 77-476 36-487 (995)
16 3s5m_A Falcilysin; M16 metallo 100.0 1.6E-39 5.6E-44 364.5 37.7 384 76-474 84-588 (1193)
17 3cx5_B Cytochrome B-C1 complex 100.0 5E-39 1.7E-43 321.1 25.3 326 88-481 1-351 (352)
18 1q2l_A Protease III; hydrolase 100.0 2E-31 6.8E-36 299.3 31.6 369 79-474 500-907 (939)
19 2fge_A Atprep2;, zinc metallop 100.0 3.7E-31 1.3E-35 298.7 25.6 374 77-479 552-981 (995)
20 3cww_A Insulysin, insulin-degr 100.0 1.9E-28 6.3E-33 276.6 30.7 371 80-476 520-936 (990)
21 3s5m_A Falcilysin; M16 metallo 99.9 4.2E-26 1.4E-30 256.2 20.5 361 85-475 724-1175(1193)
22 3ih6_A Putative zinc protease; 99.9 1.8E-24 6E-29 197.5 20.9 171 288-474 23-195 (197)
23 3amj_B Zinc peptidase inactive 98.2 6.6E-05 2.3E-09 75.6 18.1 169 288-474 24-199 (424)
24 3hdi_A Processing protease; CA 98.1 0.00011 3.7E-09 74.0 19.3 167 288-474 22-193 (421)
25 3cx5_A Cytochrome B-C1 complex 98.1 0.00013 4.4E-09 73.5 19.4 163 288-474 21-189 (431)
26 3gwb_A Peptidase M16 inactive 98.1 8.8E-05 3E-09 74.9 17.8 167 288-474 34-206 (434)
27 3eoq_A Putative zinc protease; 98.1 0.00018 6.3E-09 71.9 20.1 165 288-474 22-192 (406)
28 1pp9_B Ubiquinol-cytochrome C 98.0 0.00026 9E-09 71.4 19.2 171 279-472 35-211 (439)
29 3cx5_B Cytochrome B-C1 complex 98.0 0.00028 9.7E-09 69.0 17.9 169 288-484 11-183 (352)
30 3d3y_A Uncharacterized protein 98.0 0.00021 7.2E-09 71.7 17.4 174 288-474 23-210 (425)
31 3ami_A Zinc peptidase; alpha/b 97.9 0.00061 2.1E-08 69.0 20.1 166 288-474 27-199 (445)
32 1hr6_B Beta-MPP, mitochondrial 97.9 0.00064 2.2E-08 68.7 20.2 167 288-474 27-198 (443)
33 1pp9_A Ubiquinol-cytochrome C 97.9 0.0006 2E-08 69.1 19.6 166 288-474 33-204 (446)
34 1hr6_A Alpha-MPP, mitochondria 97.9 0.0004 1.4E-08 71.1 18.1 166 287-474 24-195 (475)
35 3ih6_A Putative zinc protease; 96.2 0.027 9.2E-07 49.8 10.4 141 96-244 21-192 (197)
36 3go9_A Insulinase family prote 94.9 0.0028 9.6E-08 65.2 -1.7 161 288-474 48-221 (492)
37 1g6u_A Domain swapped dimer; d 41.3 45 0.0015 20.3 4.0 26 380-406 3-28 (48)
38 3n22_A Protein S100-A2; EF-han 28.3 1.8E+02 0.006 21.6 6.8 77 372-449 3-84 (98)
39 3ov5_A VIRB7 (XAC2622), unchar 25.1 62 0.0021 23.4 3.1 44 201-244 31-74 (85)
40 2l4w_A Uncharacterized protein 25.0 72 0.0025 24.4 3.7 44 201-244 61-104 (120)
41 4drw_A Protein S100-A10/annexi 24.2 61 0.0021 25.6 3.5 86 371-462 6-93 (121)
42 2fcw_A Alpha-2-macroglobulin r 22.8 70 0.0024 24.7 3.3 25 384-408 10-34 (109)
43 1t0c_A Insulin; type I beta-tu 21.8 29 0.00099 19.2 0.7 12 326-337 13-24 (31)
44 1zav_U 50S ribosomal protein L 21.0 1.1E+02 0.0038 17.6 3.2 23 438-460 3-25 (30)
No 1
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=6e-62 Score=507.06 Aligned_cols=408 Identities=34% Similarity=0.552 Sum_probs=371.8
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEeec
Q 011279 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (489)
Q Consensus 77 ~~~~~~~L~NGl~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (489)
+.+++++|+||++|++.+.+.+.+++++++++|+++|++...|++||+|||+|+||++++..++.+.++..|+.++++++
T Consensus 4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~ 83 (475)
T 1hr6_A 4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS 83 (475)
T ss_dssp TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 57899999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCCCCCCh
Q 011279 157 REQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 214 (489)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~g~~ 214 (489)
++.+.|++++++++++.+| ..+.+|++...++|...+.+.++..+| ++||+++.+|+.
T Consensus 84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~ 163 (475)
T 1hr6_A 84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR 163 (475)
T ss_dssp SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999888 567778888789999999999999999 999999999999
Q ss_pred hhhccCCHHHHHHHHHhhCCCCCeEEEEecCCHHHHHHHHHHhhCCCCCCCCC-CCCCCCcCCCceEEecC----CCCCc
Q 011279 215 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR-EEPKSVYTGGDYRCQAD----SGDQL 289 (489)
Q Consensus 215 ~~l~~i~~~~l~~f~~~~y~~~~~~l~ivGvd~~~l~~~i~~~~~~lp~~~~~-~~~~~~~~~~~~~~~~~----~~~~~ 289 (489)
+.|++++.++|++||++||.|+||+++++|+++++++++++++|+.||....+ ....+.+.++..++... .+.++
T Consensus 164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (475)
T 1hr6_A 164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL 243 (475)
T ss_dssp GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC
T ss_pred HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccc
Confidence 99999999999999999999999999999999999999999999999865443 21223444544444421 23378
Q ss_pred eEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEEE
Q 011279 290 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 369 (489)
Q Consensus 290 ~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~~ 369 (489)
+++.++|.+++ .+.++..++.|++.+||++++||+|||||||.++||++||++.|++|++.++...+.+.|.|.|++.
T Consensus 244 ~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~ 321 (475)
T 1hr6_A 244 FHIQIGFEGLP--IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLS 321 (475)
T ss_dssp EEEEEEEECCC--TTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEE
T ss_pred eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEE
Confidence 99999999876 5778999999999999999999999999999999999999999999999999888888899999999
Q ss_pred eCcccHHHHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHHHHHh
Q 011279 370 TGSDFVSKAIDLAARELISVAT---PGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVE 446 (489)
Q Consensus 370 ~~p~~~~~~i~~~~~el~~l~~---~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~~~i~ 446 (489)
++|+++.++++.+.+++.++.+ .| +|++||+++|++++.++...++++..+++.++++++.+|.+.+.+++.+.|+
T Consensus 322 ~~~~~~~~~~~~~~~~l~~l~~~~~~~-~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 400 (475)
T 1hr6_A 322 CIPQAAPQAVEVIAQQMYNTFANKDLR-LTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIE 400 (475)
T ss_dssp ECGGGHHHHHHHHHHHHHTTTTCTTSC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 9999999999999999999987 56 9999999999999999999999999999999998766787767889999999
Q ss_pred cCCHHHHHHHHHHhccC----------CceEEEEcCCCCCCCHHHHHHHhh
Q 011279 447 GVTAKDIASVAQKLLSS----------PLTMASYGDVINVPSYDAVSSKFK 487 (489)
Q Consensus 447 ~vT~edI~~~a~~~l~~----------~~~~~v~G~~~~lp~~~~~~~~~~ 487 (489)
+||++||++++++||.. +++++++|+..++|+++++.+.+.
T Consensus 401 ~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 451 (475)
T 1hr6_A 401 DLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYG 451 (475)
T ss_dssp TCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGCCHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCcCHHHHHHHhc
Confidence 99999999999999975 799999999999999999988875
No 2
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=8.2e-57 Score=461.01 Aligned_cols=385 Identities=25% Similarity=0.406 Sum_probs=350.6
Q ss_pred eEEEEcCCCcEEEEecCC-CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEeecc
Q 011279 79 TKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (489)
Q Consensus 79 ~~~~~L~NGl~V~~~~~~-~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (489)
++.++|+||++|++.+.+ .+.+++.+++++|+++|+++..|++||+|||+|+||.+++..++.+.++..|+.+++++++
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK 81 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeecc
Confidence 578999999999976665 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCCCCCChh
Q 011279 158 EQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPES 215 (489)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~g~~~ 215 (489)
+++.|++++++++++.+| ..+.+|++...++|...+.+.+.+.+| ++||+++.+|+.+
T Consensus 82 d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 161 (421)
T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVE 161 (421)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHH
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 999999999999999888 667788888889999999999999999 9999999999999
Q ss_pred hhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCCC-CCCcCCCceEEecCCCCCceEEE
Q 011279 216 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP-KSVYTGGDYRCQADSGDQLTHFV 293 (489)
Q Consensus 216 ~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~ 293 (489)
+|++++.++|++||+++|.|+||+|+++| ++ ++++++++++|+.||....+... .+.+.+.......+. +++++.
T Consensus 162 ~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~q~~v~ 238 (421)
T 3hdi_A 162 TLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQGEKPMFLPNRIVRKKET--EQAHLC 238 (421)
T ss_dssp HHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCCCCCCCCCCEEEEECCC--SEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEecCCC--CceEEE
Confidence 99999999999999999999999999999 99 99999999999999876543322 233333333334455 899999
Q ss_pred EEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEEEeCcc
Q 011279 294 LAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSD 373 (489)
Q Consensus 294 l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~~~~p~ 373 (489)
++|++++ .++++..++.|++.+||++ +.+|||++||++.|++|+++++...+.+.|.|.+++.++|+
T Consensus 239 ~~~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~ 305 (421)
T 3hdi_A 239 LGYPGLP--IGDKDVYALVLLNNVLGGS-----------MSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHD 305 (421)
T ss_dssp EEEECCC--TTCTTHHHHHHHHHHHTSS-----------SSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGG
T ss_pred EEEecCC--CCCchHHHHHHHHHHhCCC-----------cccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHH
Confidence 9999986 6789999999999999976 45999999999999999999988888889999999999999
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCHHHH
Q 011279 374 FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDI 453 (489)
Q Consensus 374 ~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~~~i~~vT~edI 453 (489)
+..++++.+.++|.++++.| ++++||+++|+.++.++...++++..++..++.+.+..+...+.+++.+.|++||++||
T Consensus 306 ~~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv 384 (421)
T 3hdi_A 306 QLDDLVYSIQETTSALAEKG-LTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDV 384 (421)
T ss_dssp GHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHH
Confidence 99999999999999999887 99999999999999999999999999999998887777777888999999999999999
Q ss_pred HHHHHHhccCCceEEEEcCCCCCCCHH
Q 011279 454 ASVAQKLLSSPLTMASYGDVINVPSYD 480 (489)
Q Consensus 454 ~~~a~~~l~~~~~~~v~G~~~~lp~~~ 480 (489)
+++|++|+.++.+++++||..++|+++
T Consensus 385 ~~~a~~~~~~~~~~~vvgp~~~ip~~~ 411 (421)
T 3hdi_A 385 SRLAKILLSASPSISLINANGELPKAL 411 (421)
T ss_dssp HHHHHHHTTSCCEEEEEESSCSCCSCS
T ss_pred HHHHHHHcccCcEEEEECchhcCcchh
Confidence 999999997779999999999999864
No 3
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=1.3e-56 Score=462.39 Aligned_cols=407 Identities=29% Similarity=0.441 Sum_probs=362.1
Q ss_pred CCCceEEEEcCCCcEEEEecCCCC-eEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeE
Q 011279 75 EPGKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQA 153 (489)
Q Consensus 75 ~~~~~~~~~L~NGl~V~~~~~~~~-~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~ 153 (489)
..+.++.++|+||++|++.+++.+ .+++.+++++|+++|++...|++||++||+|+||++++..++.+.++.+|+.+++
T Consensus 3 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na 82 (443)
T 1hr6_B 3 QIPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNA 82 (443)
T ss_dssp --CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEE
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEE
Confidence 346789999999999998777765 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeccceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCCCC
Q 011279 154 SASREQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLL 211 (489)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~ 211 (489)
+++++++.|++++++++++.++ ..+.+|++...++|...+.+.+++.+| ++||+++.+
T Consensus 83 ~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (443)
T 1hr6_B 83 YTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTIL 162 (443)
T ss_dssp EECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSS
T ss_pred EECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCc
Confidence 9999999999999999999888 667778888889999999999999999 999999999
Q ss_pred CChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCCC------CCCcCCCceEEecC
Q 011279 212 APESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP------KSVYTGGDYRCQAD 284 (489)
Q Consensus 212 g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~~------~~~~~~~~~~~~~~ 284 (489)
|+.+.|++++.++|++||+++|.|+||+|+++| +++++++++++++|+.||....+... .+.+.++...+..+
T Consensus 163 g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
T 1hr6_B 163 GPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKEN 242 (443)
T ss_dssp CCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEECT
T ss_pred CCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCCeEEeccC
Confidence 999999999999999999999999999999999 99999999999999999865433211 22233333333222
Q ss_pred CCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceE
Q 011279 285 SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 364 (489)
Q Consensus 285 ~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~ 364 (489)
+.+++++.++|.+++ ++.++..++.|++.+||++. ...|+|+||.+||+++||++.|++|+++++...+.+.|.|
T Consensus 243 -~~~~~~v~~~~~~~~--~~~~~~~~l~vl~~iLg~~~--r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~ 317 (443)
T 1hr6_B 243 -TLPTTHIAIALEGVS--WSAPDYFVALATQAIVGNWD--RAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLW 317 (443)
T ss_dssp -TCSEEEEEEEEECCC--TTCTTHHHHHHHHHHHCEEE--TTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEE
T ss_pred -CccceEEEEEEecCC--CCCccHHHHHHHHHHhCCCc--ccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEE
Confidence 238999999999986 57889999999999998743 2345688899999999999999999999988777788999
Q ss_pred EEEEEeC--cccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHH
Q 011279 365 GIQGTTG--SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFL 442 (489)
Q Consensus 365 ~i~~~~~--p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~ 442 (489)
.+++.|+ |++..++++.+.+++.++++.| ++++||+++|+.++.++...++++..+++.++.+++.+|...+.+++.
T Consensus 318 ~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 396 (443)
T 1hr6_B 318 GMYIVTDSNEHNVRLIVNEILKEWKRIKSGK-ISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVF 396 (443)
T ss_dssp EEEEEEETTTCCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred EEEEEecCChhHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCCHHHHH
Confidence 9999999 9999999999999999999876 999999999999999999999999999999998875577766688999
Q ss_pred HHHhcCCHHHHHHHHHHhcc-CCceEEEEcCCCCCCCHHHHHHHhh
Q 011279 443 KTVEGVTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFK 487 (489)
Q Consensus 443 ~~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~~lp~~~~~~~~~~ 487 (489)
+.|++||++||++++++|+. ++.+++++||...+|++++|..++.
T Consensus 397 ~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~ 442 (443)
T 1hr6_B 397 EQVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEKLN 442 (443)
T ss_dssp HHHHTCCHHHHHHHHHHHSSSCCEEEEEEECGGGCCCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhccCCcEEEEECCcccCccHHHHHHHhc
Confidence 99999999999999999998 7899999999999999999988764
No 4
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=1.4e-56 Score=462.96 Aligned_cols=402 Identities=27% Similarity=0.470 Sum_probs=360.9
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEeec
Q 011279 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (489)
Q Consensus 77 ~~~~~~~L~NGl~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (489)
+.++.++|+||++|++.+.+++.+++.+++++|+++|+++..|++||+|||+|+||++++..++.+.++.+|+.++++++
T Consensus 12 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~ 91 (446)
T 1pp9_A 12 PETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYST 91 (446)
T ss_dssp CCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEEC
T ss_pred cCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 57789999999999987777889999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCCCCCCh
Q 011279 157 REQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE 214 (489)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~g~~ 214 (489)
++++.|++++++++++.++ ..+.+|++...++|...+.+.+++.+| ++||+++.+|+.
T Consensus 92 ~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 171 (446)
T 1pp9_A 92 REHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPS 171 (446)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCH
T ss_pred CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 9999999999999999888 667778888889999999999999999 999999999999
Q ss_pred hhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCC--C--CCCcCCCceEEe-cCCCCC
Q 011279 215 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--P--KSVYTGGDYRCQ-ADSGDQ 288 (489)
Q Consensus 215 ~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~--~--~~~~~~~~~~~~-~~~~~~ 288 (489)
++|++++.++|++||++||+|+||+++++| +++++++++++++|+.||....+.. . .+.+.++...+. .+. +
T Consensus 172 ~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 249 (446)
T 1pp9_A 172 ENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGL--P 249 (446)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEETTS--S
T ss_pred HHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCCCCceEEEecCCc--c
Confidence 999999999999999999999999999999 9999999999999999986543321 1 223333333332 334 7
Q ss_pred ceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEE
Q 011279 289 LTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQG 368 (489)
Q Consensus 289 ~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~ 368 (489)
++++.++|.+++ .++++..++.|++.+||++.+ +.| +|+||.||||++||++ |++|+++++...+.+.|.|.+++
T Consensus 250 ~~~v~~~~~~~~--~~~~d~~al~vl~~iLg~~~~-~~~-~g~~~~srL~~~lr~~-glay~~~s~~~~~~~~g~~~i~~ 324 (446)
T 1pp9_A 250 LAHVAIAVEGPG--WAHPDNVALQVANAIIGHYDC-TYG-GGAHLSSPLASIAATN-KLCQSFQTFNICYADTGLLGAHF 324 (446)
T ss_dssp SEEEEEEEEECC--TTCTHHHHHHHHHHHHCEEET-TCS-CGGGCSSHHHHHHHHH-TCCSEEEEEEEECSSCEEEEEEE
T ss_pred ceEEEEEEecCC--CCCccHHHHHHHHHHhCCCcc-cCC-CCCCCCCHHHHHHHhc-CCeEEEEEecccCCCCeEEEEEE
Confidence 999999999987 577899999999999987654 444 6789999999999964 89999999887777889999999
Q ss_pred EeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcC
Q 011279 369 TTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGV 448 (489)
Q Consensus 369 ~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~~~i~~v 448 (489)
.++|++..++++.+.++++++++ | ++++||+++|+.++.++...++++..+++.++++++.+|...+.+++.+.|++|
T Consensus 325 ~~~~~~~~~~~~~i~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~v 402 (446)
T 1pp9_A 325 VCDHMSIDDMMFVLQGQWMRLCT-S-ATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEV 402 (446)
T ss_dssp EECTTSHHHHHHHHHHHHHHHHH-H-CCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCCHHHHHHHHHTC
T ss_pred EECHHHHHHHHHHHHHHHHHHhc-c-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHcC
Confidence 99999999999999999999987 7 999999999999999999999999999999998876678777788999999999
Q ss_pred CHHHHHHHHHHhcc-CCceEEEEcCCCCCCCHHHHHHHhh
Q 011279 449 TAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFK 487 (489)
Q Consensus 449 T~edI~~~a~~~l~-~~~~~~v~G~~~~lp~~~~~~~~~~ 487 (489)
|++||++++++|+. ++.+++++||..++|.++++.+++.
T Consensus 403 t~edv~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 442 (446)
T 1pp9_A 403 DARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMF 442 (446)
T ss_dssp CHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTC
T ss_pred CHHHHHHHHHHHcCCCCcEEEEECCcccCcCHHHHHhhHH
Confidence 99999999999998 7899999999999999999988753
No 5
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-56 Score=457.08 Aligned_cols=379 Identities=20% Similarity=0.236 Sum_probs=342.6
Q ss_pred eEEEEcCCCcEEEEecCCC-CeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEeecc
Q 011279 79 TKISTLPNGVKIASETSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (489)
Q Consensus 79 ~~~~~L~NGl~V~~~~~~~-~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (489)
++.++|+||++|++.+.+. +.+++++++++|+++|+++..|++||+|||+|+||.+++..++.+.++.+|+.+|+++++
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 5789999999999766664 799999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEccCCCHHHHH--------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCCCCCChhh
Q 011279 158 EQMGYSFDALKTYVPEML--------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESA 216 (489)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l--------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~g~~~~ 216 (489)
+++.|++++++++++.++ ..+.+|++...++|...+.+.+++.+| +|||+++.+|+.++
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~ 161 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLLRPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRES 161 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHH
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHH
Confidence 999999999999999887 566778888888999999999999999 99999999999999
Q ss_pred hccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCCCCC-CcCCCceEEecCCCCCceEEEE
Q 011279 217 INRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKS-VYTGGDYRCQADSGDQLTHFVL 294 (489)
Q Consensus 217 l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~l 294 (489)
|++++.++|++||++||.|+||+|+++| +++++++++++++|+.||..+.+....+ .+.++...+..+. .+++++.+
T Consensus 162 i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~q~~~~~ 240 (406)
T 3eoq_A 162 ITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEK-ARALYLVA 240 (406)
T ss_dssp HHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEEECTT-CSSEEEEE
T ss_pred HhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEecCC-ccceEEEE
Confidence 9999999999999999999999999999 9999999999999999986543322111 2223333333331 17899999
Q ss_pred EeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEEEeCccc
Q 011279 295 AFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDF 374 (489)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~~~~p~~ 374 (489)
+|++++ .++++..++.|++.+|||+ +.||||++||+ .|++|+++++...+.+.|.|.+++.++|++
T Consensus 241 ~~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lre-~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~ 306 (406)
T 3eoq_A 241 LFPGVA--YQEEARFPGQVLAHLLGEE-----------GSGRLHFALVD-KGLAEVASFGLEEADRAGTFHAYVQADPAR 306 (406)
T ss_dssp EEECCC--TTCTTHHHHHHHHHHHHCT-----------TTSHHHHHTTT-TTSEEEEEEEEEECSSCEEEEEEEEECGGG
T ss_pred EecCCC--CCCchHHHHHHHHHHhCCC-----------cchHHHHHHHH-cCCeeEEEEEecccCCceEEEEEEEeCcch
Confidence 999987 6788999999999999976 45999999999 999999999988888899999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCHHHHH
Q 011279 375 VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIA 454 (489)
Q Consensus 375 ~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~~~i~~vT~edI~ 454 (489)
..++++.+.++|+++++.| ++++||+++|++++.++...++++..++..++.+++..+.+.+.+++.+.|++||++||+
T Consensus 307 ~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~ 385 (406)
T 3eoq_A 307 KGEVLAVLQEELDRLGREG-VGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVN 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHH
Confidence 9999999999999998877 999999999999999999999999999999999988778888899999999999999999
Q ss_pred HHHHHhcc-CCceEEEEcCCC
Q 011279 455 SVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 455 ~~a~~~l~-~~~~~~v~G~~~ 474 (489)
++|++||. ++. ++++||..
T Consensus 386 ~~a~~~l~~~~~-~~vvGp~~ 405 (406)
T 3eoq_A 386 ALLERGFLEKGL-YYLVLPHG 405 (406)
T ss_dssp HHHHTTTTTSCE-EEEEECCC
T ss_pred HHHHHhcCcccE-EEEECCCC
Confidence 99999999 555 99999874
No 6
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=1.1e-54 Score=447.36 Aligned_cols=399 Identities=30% Similarity=0.490 Sum_probs=359.4
Q ss_pred CCCceEEEEcCCCcEEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEe
Q 011279 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (489)
Q Consensus 75 ~~~~~~~~~L~NGl~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (489)
..++++.++|+||++|++.+...+.+.+.+++++|+.+|++...|++|+++||+|.||++++..++.+.++..|+.++++
T Consensus 20 ~~~~~~~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~ 99 (439)
T 1pp9_B 20 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVT 99 (439)
T ss_dssp -CCCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEE
T ss_pred cCCCceEEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEE
Confidence 45788999999999999765577899999999999999999999999999999999999999999999999999999999
Q ss_pred eccceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCCCCCCC
Q 011279 155 ASREQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAP 213 (489)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~g~ 213 (489)
++.+.+.|++++++++++.++ +.+.+|++...++|...+.+.++..+|.+||+++.+|+
T Consensus 100 t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~ 179 (439)
T 1pp9_B 100 STRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCP 179 (439)
T ss_dssp ECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSCC
T ss_pred ecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCccCC
Confidence 999999999999999999888 55667777778899999999999999977999999999
Q ss_pred hhhhccCCHHHHHHHHHhhCCCCCeEEEEecCCHHHHHHHHHHhhCCCCCCCCCCCCCCCcCCCceEEecCCCCCceEEE
Q 011279 214 ESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFV 293 (489)
Q Consensus 214 ~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivGvd~~~l~~~i~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 293 (489)
.++|++++.++|++||+++|.|+||+++++|-+++++.++++++|+ ||....+....+.+.++...+..+. +++++.
T Consensus 180 ~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~ 256 (439)
T 1pp9_B 180 DYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGLGLSGAKAKYHGGEIREQNGD--SLVHAA 256 (439)
T ss_dssp GGGTTTCCHHHHHHHHHHHCSGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC-CCCCCCCBCCEEEEEECCC--SEEEEE
T ss_pred HHHHhhcCHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHHhC-CCCCCCCCCCCCCCcCCeEEecCCc--cceEEE
Confidence 9999999999999999999999999999999888999999999999 9865433222233444444444554 889999
Q ss_pred EEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEEEeCcc
Q 011279 294 LAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSD 373 (489)
Q Consensus 294 l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~~~~p~ 373 (489)
++|.+++ .+.++..++.|++.+|+++++|++|| ||.+|||++||++.|++|+++++...+.+.|.|.+++.++|+
T Consensus 257 ~~~~~~~--~~~~~~~~~~ll~~iLg~~~~~~~~~---g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~ 331 (439)
T 1pp9_B 257 LVAESAA--IGSAEANAFSVLQHVLGAGPHVKRGS---NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAA 331 (439)
T ss_dssp EEEECCC--TTSHHHHHHHHHHHHHCCSCSBTTCC---CTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGG
T ss_pred EEecCCC--CCchHHHHHHHHHHHhCCCcccCCCC---CccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHH
Confidence 9999986 57789999999999999999999888 888999999999999999999987777778999999999999
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCHHHH
Q 011279 374 FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDI 453 (489)
Q Consensus 374 ~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~~~i~~vT~edI 453 (489)
+..++++.+.+++.++++.| ++++||+++|+.++.++....+++..++..++.+++..+.....+++.+.|++||++||
T Consensus 332 ~~~~~~~~~~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv 410 (439)
T 1pp9_B 332 SAGDVIKAAYNQVKTIAQGN-LSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADV 410 (439)
T ss_dssp GHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHH
Confidence 99999999999999999877 99999999999999999999999999999999888766777778999999999999999
Q ss_pred HHHHHHhccCCceEEEEcCCCCCCCHHHH
Q 011279 454 ASVAQKLLSSPLTMASYGDVINVPSYDAV 482 (489)
Q Consensus 454 ~~~a~~~l~~~~~~~v~G~~~~lp~~~~~ 482 (489)
++++++|+.++.+++++|+..++|.++++
T Consensus 411 ~~~a~~~~~~~~~~~v~g~~~~~~~~~~~ 439 (439)
T 1pp9_B 411 INAAKKFVSGRKSMAASGNLGHTPFIDEL 439 (439)
T ss_dssp HHHHHHHHHSCEEEEEEECGGGCCCGGGC
T ss_pred HHHHHHHhcCCceEEEECCcccCCccccC
Confidence 99999999888999999999999998863
No 7
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=1.9e-54 Score=446.73 Aligned_cols=396 Identities=21% Similarity=0.315 Sum_probs=341.1
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEee
Q 011279 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 155 (489)
Q Consensus 77 ~~~~~~~L~NGl~V~~~~~~-~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 155 (489)
++++.++|+||++|++.+.+ .+.+.+.+++++|+++|+++..|++||+|||+|+||++++..++.+.++.+|+.+++++
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t 84 (445)
T 3ami_A 5 ASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFT 84 (445)
T ss_dssp GGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEE
T ss_pred cCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCcccccc
Confidence 57899999999999965544 67999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEEccCCCHHHHH---------------------HHHHHHHH-hhcCChhHHHHHHHHHHhc-CCCCCCCCCC
Q 011279 156 SREQMGYSFDALKTYVPEML---------------------TKVKSEIS-EVSNNPQSLLLEAIHSAGY-SGALANPLLA 212 (489)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~-~~~~~p~~~~~~~l~~~~~-~~~~~~~~~g 212 (489)
+++++.|.+++++++++.+| ..+.+|++ ...++|...+.+.+++.+| ++||+++.+|
T Consensus 85 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G 164 (445)
T 3ami_A 85 TRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIG 164 (445)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTC
T ss_pred CCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCC
Confidence 99999999999999999888 66777887 5678999999999999999 9999999999
Q ss_pred ChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCCC--C-CCcCCCc-eEEecCCCC
Q 011279 213 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--K-SVYTGGD-YRCQADSGD 287 (489)
Q Consensus 213 ~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~~--~-~~~~~~~-~~~~~~~~~ 287 (489)
+.++|++++.++|++||++||.|+||+|+|+| +++++++++++++|+.||....+... . +...+.. ..+..+.
T Consensus 165 ~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 242 (445)
T 3ami_A 165 WMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPA-- 242 (445)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCCCCCCCSCEEEEEEEEC--
T ss_pred CHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceEEEEecCC--
Confidence 99999999999999999999999999999999 99999999999999999865433221 1 1222222 2333344
Q ss_pred CceEEEEEeecCCC--CCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecc-cCC-cce
Q 011279 288 QLTHFVLAFELPGG--WHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI-YNH-SGM 363 (489)
Q Consensus 288 ~~~~v~l~~~~~~~--~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~-~~~-~g~ 363 (489)
+++++.++|.+|.. +.+.++..++.+++.+|+++ +.|||+++||++.|++|+++++... ..+ .|.
T Consensus 243 ~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~-----------~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~ 311 (445)
T 3ami_A 243 ELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGY-----------DGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGL 311 (445)
T ss_dssp SSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSS-----------TTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEE
T ss_pred CccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCC-----------cchHHHHHHhhcCCcEEEEEeeccccccCCCCe
Confidence 78999999999851 32278899999999999976 4499999999999999999998764 456 899
Q ss_pred EEEEEEeCccc-HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHH
Q 011279 364 FGIQGTTGSDF-VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFL 442 (489)
Q Consensus 364 ~~i~~~~~p~~-~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~ 442 (489)
|.|++.|.|+. .+++++.+.++|.++++.| ++++||+++|+.++.++..+++++..|++.++++++.++.....+++.
T Consensus 312 ~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 390 (445)
T 3ami_A 312 FILEGVPSKGVTIAQLETDLRAQVRDIAAKG-VTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRDDDRFY 390 (445)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTTHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 99999999985 9999999999999999877 999999999999999999999999999999999887555567778999
Q ss_pred HHHhcCCHHHHHHHHHHhcc-CCceEEEEcCCCCCCCHHHHHHHh
Q 011279 443 KTVEGVTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKF 486 (489)
Q Consensus 443 ~~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~~lp~~~~~~~~~ 486 (489)
+.|++||++||++++++||. ++.+++++||...+|...+=+..|
T Consensus 391 ~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 435 (445)
T 3ami_A 391 QQLRSVTAAEVKAAAARLLTDDTLTVANLVPLPPDPKAQQNEPDF 435 (445)
T ss_dssp HHHHTCCHHHHHHHHHTTSCSTTEEEEEEEEECC-----------
T ss_pred HHHHcCCHHHHHHHHHHHcCcCCeEEEEEccCccCccccccCCcc
Confidence 99999999999999999998 789999999999998876655444
No 8
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=4.6e-52 Score=427.11 Aligned_cols=388 Identities=17% Similarity=0.187 Sum_probs=342.6
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEee
Q 011279 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 155 (489)
Q Consensus 77 ~~~~~~~L~NGl~V~~~~~~-~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 155 (489)
++++.++|+||++|++.+.+ .+.+++.+++++|+.+| +...|++||++||+|+||++++..++.+.++.+|+.+++++
T Consensus 12 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~t 90 (434)
T 3gwb_A 12 LNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNGA 90 (434)
T ss_dssp CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEEE
T ss_pred CCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEeee
Confidence 57899999999999976655 58999999999999999 88999999999999999999999999999999999999999
Q ss_pred ccceEEEEEEccCCC--HHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCCCC
Q 011279 156 SREQMGYSFDALKTY--VPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLL 211 (489)
Q Consensus 156 ~~~~~~~~~~~~~~~--l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~ 211 (489)
+.+.+.|++++++++ ++.++ +.+++++++..++|...+.+.++..+| ++||+++..
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 170 (434)
T 3gwb_A 91 YKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASD 170 (434)
T ss_dssp CSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTT
T ss_pred cCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 999999999999988 88887 566777787889999999999999999 999999999
Q ss_pred CChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCCCC-C-CcCCCceEEecCCCCC
Q 011279 212 APESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK-S-VYTGGDYRCQADSGDQ 288 (489)
Q Consensus 212 g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~~~-~-~~~~~~~~~~~~~~~~ 288 (489)
|+.+.|++++.++|++||+++|.|+||+++++| ++++++.++++++|+.||....+..+. + ...++...+..+. .
T Consensus 171 G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 248 (434)
T 3gwb_A 171 GDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIEFPS--S 248 (434)
T ss_dssp CCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCCCCEEEEEECCS--S
T ss_pred CCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEeCCC--C
Confidence 999999999999999999999999999999999 999999999999999998764433221 1 2223344445555 8
Q ss_pred ceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEE
Q 011279 289 LTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQG 368 (489)
Q Consensus 289 ~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~ 368 (489)
++++.++|.++. .+.++..++.|++.+||++ ||.+|||++||++.|++|+++++...+.+.|.|.|++
T Consensus 249 ~~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~----------~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~ 316 (434)
T 3gwb_A 249 QTSLMLAQLGID--RDDPDYAAVSLGNQILGGG----------GFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINL 316 (434)
T ss_dssp EEEEEEEEECCB--TTCTTHHHHHHHHHHHHSS----------SSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEE
T ss_pred ceeEEecCcCCC--CCCcchHHHHHHHHHhCCC----------cccchhHHHHHhhcCCcceeeeecccCCCceeEEEEE
Confidence 899999999886 6788999999999999965 3669999999999999999999988888889999999
Q ss_pred EeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcC
Q 011279 369 TTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGV 448 (489)
Q Consensus 369 ~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~~~i~~v 448 (489)
.++|++..++++.+.+++.++++.| ++++||+++|+.++.++....+++..++..++..++........+++.+.|++|
T Consensus 317 ~~~~~~~~~~~~~i~~~l~~l~~~~-~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 395 (434)
T 3gwb_A 317 QTRAEMSEGTLKLVQDVFAEYLKNG-PTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSYLEDFMRQSQEL 395 (434)
T ss_dssp EEEGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHC
T ss_pred ecchhhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhC
Confidence 9999999999999999999998877 999999999999999999999999999999998775333345678999999999
Q ss_pred CHHHHHHHHHHhcc-CCceEEEEcCCCCCCCHH
Q 011279 449 TAKDIASVAQKLLS-SPLTMASYGDVINVPSYD 480 (489)
Q Consensus 449 T~edI~~~a~~~l~-~~~~~~v~G~~~~lp~~~ 480 (489)
|++||++++++||. ++.+++++||...-|-.+
T Consensus 396 t~~dv~~~a~~~l~~~~~~~~vvg~~~~~~~~~ 428 (434)
T 3gwb_A 396 TVEQVKAAMNKHLNVDKMVIVSAGPTVAQKPLE 428 (434)
T ss_dssp CHHHHHHHHHHHCCGGGCEEEEEECCCCCCC--
T ss_pred CHHHHHHHHHHhcChhhEEEEEEcCccccCcch
Confidence 99999999999999 889999999988654443
No 9
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=2.9e-51 Score=420.66 Aligned_cols=392 Identities=20% Similarity=0.319 Sum_probs=341.2
Q ss_pred EEEEcCCCcEEEEecCC-CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEeeccc
Q 011279 80 KISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASRE 158 (489)
Q Consensus 80 ~~~~L~NGl~V~~~~~~-~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~ 158 (489)
++++|+||++|++.+++ .+.+.+.+++++|+++|+++..|++||++||+|+|+.+ ..++..|+.++++++++
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~-------~~~~~~G~~~na~t~~~ 74 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS-------AVAAKEGLALSSNISRD 74 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH-------HHHHHTTCEEEEEECSS
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc-------ccHHHcCCeeeeeecCC
Confidence 46789999999976665 57999999999999999999999999999999998753 34788999999999999
Q ss_pred eEEEEEEccCCCHHHHH------------------------HHHHHHHHhhcCCh-hHHHHHHHHHHhc-CCCCCCCCCC
Q 011279 159 QMGYSFDALKTYVPEML------------------------TKVKSEISEVSNNP-QSLLLEAIHSAGY-SGALANPLLA 212 (489)
Q Consensus 159 ~~~~~~~~~~~~l~~~l------------------------~~v~~el~~~~~~p-~~~~~~~l~~~~~-~~~~~~~~~g 212 (489)
.+.|++++++++++.+| +.+.+|++...++| ...+.+.+++.+| ++||+++.+|
T Consensus 75 ~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g 154 (431)
T 3cx5_A 75 FQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRG 154 (431)
T ss_dssp CEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTC
T ss_pred eEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCC
Confidence 99999999999998877 23344555556789 9999999999999 9999999999
Q ss_pred ChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCCCC-CCcCCCceEEecCCCCCce
Q 011279 213 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGDYRCQADSGDQLT 290 (489)
Q Consensus 213 ~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 290 (489)
+.+.|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||....+.... +.+.+....+..+ +.+++
T Consensus 155 ~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 233 (431)
T 3cx5_A 155 TLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDD-TLPKA 233 (431)
T ss_dssp CHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCCCCCCCCCCEEEEEECT-TSSSE
T ss_pred CHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCcccCceEEEcCC-CCCce
Confidence 99999999999999999999999999999999 999999999999888998654332111 2233333333332 23789
Q ss_pred EEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCC-cccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEEE
Q 011279 291 HFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKG-MYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 369 (489)
Q Consensus 291 ~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkg-m~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~~ 369 (489)
++.++|.+++ .+.++..++.|++.+|+++ ++||||+| |.+|||++||+ .|++|+++++...+.+.|.|.|++.
T Consensus 234 ~v~~~~~~~~--~~~~~~~~~~vl~~iL~~~---~~~~~~~~~~~s~L~~~lRe-~gl~y~v~~~~~~~~~~g~~~i~~~ 307 (431)
T 3cx5_A 234 WISLAVEGEP--VNSPNYFVAKLAAQIFGSY---NAFEPASRLQGIKLLDNIQE-YQLCDNFNHFSLSYKDSGLWGFSTA 307 (431)
T ss_dssp EEEEEEECCC--TTCTTHHHHHHHHHHHCEE---ETTCTTGGGSSCTHHHHHHT-TTCCSEEEEEEEECSSCEEEEEEEE
T ss_pred EEEEEeecCC--CCCccHHHHHHHHHHcCCC---ccCCCCccccccHHHHHHHh-cCceeeEeEeecccCCCceEEEEEe
Confidence 9999999986 6788999999999999865 45899996 77999999997 5999999998777778899999999
Q ss_pred eCc-ccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHcCCCCCHHHHHHHHh
Q 011279 370 TGS-DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM--NLESRMVVSEDIGRQVLTYGERKPVEHFLKTVE 446 (489)
Q Consensus 370 ~~p-~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~--~~es~~~~~~~i~~~~~~~g~~~~~~~~~~~i~ 446 (489)
++| ++..++++.+.+++.++++ | ++++||+++|+.++.++.. ..+++..++..++.+++.+|.....+++.+.|+
T Consensus 308 ~~~~~~~~~~~~~~~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~ 385 (431)
T 3cx5_A 308 TRNVTMIDDLIHFTLKQWNRLTI-S-VTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKID 385 (431)
T ss_dssp ESCTTCHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred eCchhhHHHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 999 9999999999999999988 7 9999999999999999999 999999999999987765677666889999999
Q ss_pred cCCHHHHHHHHHHhcc-CCceEEEEcCCCCCCCHHHHHHHhh
Q 011279 447 GVTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFK 487 (489)
Q Consensus 447 ~vT~edI~~~a~~~l~-~~~~~~v~G~~~~lp~~~~~~~~~~ 487 (489)
+||++||++++++++. ++.+++++||..++|+++++..++.
T Consensus 386 ~vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~ 427 (431)
T 3cx5_A 386 AITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSDMS 427 (431)
T ss_dssp HCCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTS
T ss_pred cCCHHHHHHHHHHHcccCCcEEEEEcchhcccCHHHHHhHHH
Confidence 9999999999999998 7899999999999999999988753
No 10
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=4.6e-51 Score=418.50 Aligned_cols=384 Identities=18% Similarity=0.259 Sum_probs=337.0
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCC----CCChHHHHHHHHHcCCee
Q 011279 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTR----NRSHLRIVREVEAIGGNV 151 (489)
Q Consensus 77 ~~~~~~~L~NGl~V~~~~~~-~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~----~~s~~~l~~~l~~~g~~~ 151 (489)
++++.++|+||++|++.+++ .+.+.+.+++++|+.+|+++..|++||++||+|+||+ +++..++.+.++.+|+.+
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEE
Confidence 46789999999999976555 6799999999999999999999999999999999999 999999999999999999
Q ss_pred eEeeccceEEEEEEccCCCH--HHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCC
Q 011279 152 QASASREQMGYSFDALKTYV--PEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALA 207 (489)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l--~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~ 207 (489)
+++++.+.+.|+++++++++ +.+| +.+.+|++...++|...+.+.+.+.+| ++||+
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~ 161 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYG 161 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGG
T ss_pred EeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999998 8777 566777887788999999999999999 99999
Q ss_pred CCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCC-CCC-CcCCCceEEecC
Q 011279 208 NPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-PKS-VYTGGDYRCQAD 284 (489)
Q Consensus 208 ~~~~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~-~~~-~~~~~~~~~~~~ 284 (489)
.+. +.++|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||....+.. +.+ ...+....+..+
T Consensus 162 ~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (424)
T 3amj_B 162 HVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATVERIANP 239 (424)
T ss_dssp CCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCCCCCCCCCEEEEEECS
T ss_pred CCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEeeCC
Confidence 986 89999999999999999999999999999999 9999999999999999986543322 111 122223334444
Q ss_pred CCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceE
Q 011279 285 SGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 364 (489)
Q Consensus 285 ~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~ 364 (489)
. +++++.++|+++. .+.++..++.+++.+||++ |+.+|||++||++.|++|+++++...+.+.|.|
T Consensus 240 ~--~~~~v~~~~~~~~--~~~~~~~~~~vl~~iLg~~----------~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~ 305 (424)
T 3amj_B 240 A--TQAHIAIGMPTLK--RGDPDFFPLVVGNYALGGG----------GFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLF 305 (424)
T ss_dssp S--SEEEEEEEEEEEB--TTCTTHHHHHHHHHHHTTS----------GGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEE
T ss_pred C--CccEEEeeccCCC--CCCcchHHHHHHHHHhCCC----------CccchhHHHHHHhCCeEEEeeeeeccCCCceeE
Confidence 4 8999999999876 5788999999999999864 266999999999999999999988877788999
Q ss_pred EEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC-CCHHHHHH
Q 011279 365 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER-KPVEHFLK 443 (489)
Q Consensus 365 ~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~-~~~~~~~~ 443 (489)
.|++.++|++..++++.+.+++.++++.| ++++||+++|+.++.++....+++..++..++...+ .+.. ...+++.+
T Consensus 306 ~i~~~~~~~~~~~~~~~i~~~l~~l~~~~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 383 (424)
T 3amj_B 306 QIGFETRAEKADEAVQVANDTLDAFLREG-PTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGY-YGLPLDYLDHYTE 383 (424)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHH-TTCCTTTTTSHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHH-cCCChhHHHHHHH
Confidence 99999999999999999999999998877 999999999999999999999999999999987665 4543 55688999
Q ss_pred HHhcCCHHHHHHHHHHhcc-CCceEEEEcCCCCCCC
Q 011279 444 TVEGVTAKDIASVAQKLLS-SPLTMASYGDVINVPS 478 (489)
Q Consensus 444 ~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~~lp~ 478 (489)
.|++||++||++++++||. ++.+++++||...+.+
T Consensus 384 ~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~~ 419 (424)
T 3amj_B 384 RVQAVTVEQVREAFARHVKRENLITVVVGGKASLEH 419 (424)
T ss_dssp HHHTCCHHHHHHHHHHHCCGGGCEEEEEECC-----
T ss_pred HHHcCCHHHHHHHHHHhcCccceEEEEECChhhhhh
Confidence 9999999999999999999 8999999999876644
No 11
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=4.3e-45 Score=373.86 Aligned_cols=370 Identities=14% Similarity=0.167 Sum_probs=316.2
Q ss_pred EEcCCCcEEEEecCC-CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCC-ChHHHHHHHHHc-CCeeeEeeccc
Q 011279 82 STLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR-SHLRIVREVEAI-GGNVQASASRE 158 (489)
Q Consensus 82 ~~L~NGl~V~~~~~~-~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~-s~~~l~~~l~~~-g~~~~~~~~~~ 158 (489)
++|+||++|++.+.+ .+.+.+.+++++|+.+|+ .|++||++||+|.||.++ +..++.+.++.. |+.++++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 899999999976664 589999999999998764 699999999999999998 889999999998 99999999998
Q ss_pred e----EEEEEEccCC-------CHHHHH--------------------------HHHHHHHHhhcCChhHHHHHHHHHHh
Q 011279 159 Q----MGYSFDALKT-------YVPEML--------------------------TKVKSEISEVSNNPQSLLLEAIHSAG 201 (489)
Q Consensus 159 ~----~~~~~~~~~~-------~l~~~l--------------------------~~v~~el~~~~~~p~~~~~~~l~~~~ 201 (489)
. +.|+++++++ +++.++ +.+.++++...++|...+.+.++..+
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~ 162 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVY 162 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence 8 5899999886 588777 44556667677889999999999999
Q ss_pred c--CCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCCCC--CCcCC
Q 011279 202 Y--SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVYTG 276 (489)
Q Consensus 202 ~--~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~~~--~~~~~ 276 (489)
| ++||+++..|+.++|++++.++|++||+++|.|+||+++++| ++++++++++ ++|+ ||....+.... ....+
T Consensus 163 ~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 240 (425)
T 3d3y_A 163 FNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIFYNQPIR 240 (425)
T ss_dssp TTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSCCCCCCC
T ss_pred ccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccccccccccCC
Confidence 9 689999999999999999999999999999999999999999 9999999999 9999 98654322111 11112
Q ss_pred C-ceE--EecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEE
Q 011279 277 G-DYR--CQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSA 353 (489)
Q Consensus 277 ~-~~~--~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a 353 (489)
. ... ...+. +++++.++|..|. ..+.++..++.|++.+|||+ +.+|||++||++.|++|++++
T Consensus 241 ~~~~~~~~~~~~--~~~~v~~~~~~~~-~~~~~~~~~~~vl~~iLg~~-----------~~s~L~~~lRe~~glaY~v~~ 306 (425)
T 3d3y_A 241 NVIEERTEREVL--AQSKLNLAYNTDI-YYGDSYYFALQVFNGIFGGF-----------PHSKLFMNVREKEHLAYYASS 306 (425)
T ss_dssp SSCEEEEEEEEC--SSEEEEEEEECCC-CTTSTTHHHHHHHHHHHTTS-----------TTSHHHHHTTTTSCCCSEEEE
T ss_pred CcceeEEecCCc--cccEEEEEeecCC-CCCCchHHHHHHHHHHhCCC-----------hhhHHHHHHHHhcCeEEEEec
Confidence 1 212 22344 8999999999862 25778999999999999875 459999999999999999998
Q ss_pred eecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC
Q 011279 354 FSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYG 433 (489)
Q Consensus 354 ~~~~~~~~g~~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g 433 (489)
.... ..|.|.|++.++|++..++++.+.+++.++++.| ++++||+++|+.++.++....+++..++..++..++.+|
T Consensus 307 ~~~~--~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 383 (425)
T 3d3y_A 307 SIDT--FRGFMTVQTGIDGKNRNQVLRLISTELENIRLGK-IRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQ 383 (425)
T ss_dssp EEET--TTTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTT
T ss_pred cccc--cCceEEEEEecCHhhHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcC
Confidence 7654 3789999999999999999999999999999877 999999999999999999999999999999998887436
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHhccCCceEEEEcCCC
Q 011279 434 ERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVI 474 (489)
Q Consensus 434 ~~~~~~~~~~~i~~vT~edI~~~a~~~l~~~~~~~v~G~~~ 474 (489)
.....+++.+.|++||++||++++++|+.+ ..++++|+..
T Consensus 384 ~~~~~~~~~~~i~~vt~edv~~~a~~~~~~-~~~~v~g~~~ 423 (425)
T 3d3y_A 384 TMLTAEEWIARINAVTIPEIQEVAKRLELQ-AIFFLEGETE 423 (425)
T ss_dssp SCCCHHHHHHHHHHCCHHHHHHHHHHCEEE-EEEEEEEECC
T ss_pred CCCCHHHHHHHHHhCCHHHHHHHHHhccCc-eEEEEeCCCC
Confidence 666689999999999999999999998755 5557776553
No 12
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=1.1e-45 Score=385.46 Aligned_cols=383 Identities=16% Similarity=0.133 Sum_probs=303.6
Q ss_pred CceEEEEcCCCcEEEEe-cC--CCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHH----HcCC
Q 011279 77 GKTKISTLPNGVKIASE-TS--VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE----AIGG 149 (489)
Q Consensus 77 ~~~~~~~L~NGl~V~~~-~~--~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~----~~g~ 149 (489)
+.++.++|+||++|++. +. +.+.+++++++++|+++|+++..|++||+|||+|+||++++..++.+.++ ..|+
T Consensus 24 p~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~ 103 (492)
T 3go9_A 24 PAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERP 103 (492)
T ss_dssp TTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSC
T ss_pred CCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCC
Confidence 57899999999999854 32 35699999999999999999999999999999999999999999998766 4789
Q ss_pred eeeEeeccceEEEEEEccC---CCHHHHH--------------HHHHHHHH-------hhcCChhHHHHHHHHHHhc-CC
Q 011279 150 NVQASASREQMGYSFDALK---TYVPEML--------------TKVKSEIS-------EVSNNPQSLLLEAIHSAGY-SG 204 (489)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~---~~l~~~l--------------~~v~~el~-------~~~~~p~~~~~~~l~~~~~-~~ 204 (489)
.+|+++++|++.|++++++ ++++.+| +.+..|.. ...++|....+ ...++ .+
T Consensus 104 ~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 180 (492)
T 3go9_A 104 LPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWW---RYRLKGSS 180 (492)
T ss_dssp CCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHH---HHHTTTST
T ss_pred CcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHH---HHHhccCC
Confidence 9999999999999999998 5677777 33333332 11234544332 23455 66
Q ss_pred CCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCC--C-CCCcCCCceE
Q 011279 205 ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--P-KSVYTGGDYR 280 (489)
Q Consensus 205 ~~~~~~~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~--~-~~~~~~~~~~ 280 (489)
+++++..+ +.|++++.++|++||++||+|+||+|+++| +|+++++++++++|++||.....+. + .++..+....
T Consensus 181 ~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (492)
T 3go9_A 181 LIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEPVS 258 (492)
T ss_dssp TTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCCSSCEE
T ss_pred cccCCCch--hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCceE
Confidence 67776543 579999999999999999999999999999 9999999999999999987643221 1 1122223332
Q ss_pred -EecCCCCCceEEEEEeecCCCCCCCcchHHH------HHHHHhhcCCCCCCCCCCCCCcccHHHHHHHH--hCCCEEEE
Q 011279 281 -CQADSGDQLTHFVLAFELPGGWHKDKDAMTL------TVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLN--EFPQVQSF 351 (489)
Q Consensus 281 -~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l------~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~--~~g~~y~~ 351 (489)
+..+. +++++.++|.+|. ...+|..++ .|++.+|+ ++|+.++|+ +.|++|++
T Consensus 259 ~~~~~~--~q~~v~l~~~~~~--~~~~d~~~l~~~~~~~v~~~iLg---------------~~L~~~lre~~~~gl~y~~ 319 (492)
T 3go9_A 259 LMNEQA--AQDTLSLMWDTPW--HPIQDSMALSRYWRSDLAREALF---------------WHIKQVLEKNNQKNLKLGF 319 (492)
T ss_dssp EEESSC--SSEEEEEEEEEEC--CCCCSHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHSCCTTCEEEE
T ss_pred EEcCCC--CCcEEEEEecCCC--CCcccHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhcccccccc
Confidence 33444 8999999999986 455665544 89999998 899999999 89999999
Q ss_pred EEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHH
Q 011279 352 SAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLE-----SRMVVSEDIG 426 (489)
Q Consensus 352 ~a~~~~~~~~g~~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~e-----s~~~~~~~i~ 426 (489)
+++.....+.+.| ++.+++++.+++++.+.+++.++++.| +|++||+++|+.++.++...++ ++..+++.+.
T Consensus 320 ~s~~~~~~~~~~~--~i~~~~~~~~~a~~~i~~el~~l~~~g-~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~ 396 (492)
T 3go9_A 320 DCRVQYQRAQCAI--HLNTPVENLTANMTFVARELAALRANG-LSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRL 396 (492)
T ss_dssp EEEEETTEEEEEE--EEEECGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHH
T ss_pred CchhhhhhcceEE--EEEcCcccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 9987665555544 445689999999999999999998877 9999999999999999887655 4667788888
Q ss_pred HHHHHcCCCCCHHH----HHHHHhcCCHHHHHHHHHHhccCCceEEEEcCCCCCC-CHHHHHHHh
Q 011279 427 RQVLTYGERKPVEH----FLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVP-SYDAVSSKF 486 (489)
Q Consensus 427 ~~~~~~g~~~~~~~----~~~~i~~vT~edI~~~a~~~l~~~~~~~v~G~~~~lp-~~~~~~~~~ 486 (489)
++++.......+++ +.+.|++||++||+++++++|..+..++++|+..+++ ..+++...+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~~~ 461 (492)
T 3go9_A 397 RSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEIY 461 (492)
T ss_dssp HHHHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHHH
T ss_pred HHHhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHHHH
Confidence 77765444444444 3366999999999999999999778889999888876 466666654
No 13
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=9.2e-45 Score=407.68 Aligned_cols=386 Identities=12% Similarity=0.104 Sum_probs=324.9
Q ss_pred CCCceEEEEcCCCcEEEEecCC-CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCC-hHHHHHHHHHcCCeee
Q 011279 75 EPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQ 152 (489)
Q Consensus 75 ~~~~~~~~~L~NGl~V~~~~~~-~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s-~~~l~~~l~~~g~~~~ 152 (489)
+...++..+|+||++|++.+.+ .+.+.+.+++++|+++|+++..|+|||+|||+|+||.+++ ..++.++++.+|+.+|
T Consensus 17 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~N 96 (939)
T 1q2l_A 17 DNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHN 96 (939)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcce
Confidence 4456899999999999976555 5789999999999999999999999999999999999997 4799999999999999
Q ss_pred EeeccceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCCC
Q 011279 153 ASASREQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 210 (489)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 210 (489)
++|+.|+|.|++++++++++.+| .+|.+|++...++|..++.+.+...+| +|||+++.
T Consensus 97 A~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 176 (939)
T 1q2l_A 97 ASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFS 176 (939)
T ss_dssp EEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCC
T ss_pred EEECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCC
Confidence 99999999999999999999888 778889998889999999999999999 99999999
Q ss_pred CCChhhhcc----CCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCCC--CCCcCCC--ceEE
Q 011279 211 LAPESAINR----LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTGG--DYRC 281 (489)
Q Consensus 211 ~g~~~~l~~----i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~~--~~~~~~~--~~~~ 281 (489)
+|+.++|++ ++.++|++||++||.|+||+|+|+| +|++++.++++++|++||....+... .+.+... ...+
T Consensus 177 ~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (939)
T 1q2l_A 177 GGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIII 256 (939)
T ss_dssp SCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSCCGGGSSEEE
T ss_pred CCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCHHHcCEEE
Confidence 999999999 9999999999999999999999999 99999999999999999875433221 1222221 1223
Q ss_pred ecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEee--cccC
Q 011279 282 QADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFS--NIYN 359 (489)
Q Consensus 282 ~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~--~~~~ 359 (489)
..+...+++++.++|..|. ..+..+..++.+++.+||++++ ++|++.||+ .|++|+++++. ..+.
T Consensus 257 ~~~~~~~~~~l~i~~~~~~-~~~~~~~~~~~~l~~lLg~~~~-----------s~L~~~L~~-~gl~~~~~a~~~~~~~~ 323 (939)
T 1q2l_A 257 HYVPALPRKVLRVEFRIDN-NSAKFRSKTDELITYLIGNRSP-----------GTLSDWLQK-QGLVEGISANSDPIVNG 323 (939)
T ss_dssp EECCSSCCCEEEEEEEEEC-CGGGGGGCHHHHHHHHHHCCCT-----------TSHHHHHHH-TTCEEEEEEEEESSTTS
T ss_pred EEEeCCCCcEEEEEEEcCC-hHHhhhhCHHHHHHHHhcCCCC-----------CcHHHHHHH-cCCchheeeccccccCC
Confidence 2222227899999999996 2233366788999999998754 899999995 69999999974 3445
Q ss_pred CcceEEEEEEeCc---ccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHcCCC
Q 011279 360 HSGMFGIQGTTGS---DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL-ESRMVVSEDIGRQVLTYGER 435 (489)
Q Consensus 360 ~~g~~~i~~~~~p---~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~-es~~~~~~~i~~~~~~~g~~ 435 (489)
+.|.|.|++.+.+ ++.+++++.+.++|..+++.| ++++||+++|+.+..++.... +++...++.++.+++ ....
T Consensus 324 ~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 401 (939)
T 1q2l_A 324 NSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKG-IDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMI-RVPV 401 (939)
T ss_dssp SEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHT-TSCG
T ss_pred CceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhh-cCCH
Confidence 7799999999887 489999999999999998888 999999999999999997765 677778888888765 3322
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHhccCCceEEEEcCCCC
Q 011279 436 KPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVIN 475 (489)
Q Consensus 436 ~~~~~~~~~i~~vT~edI~~~a~~~l~~~~~~~v~G~~~~ 475 (489)
.......+.++++|+++|+++++++..++++++++||...
T Consensus 402 ~~~~~~~~~i~~vt~~~i~~~~~~l~~~~~~~~~~~p~~~ 441 (939)
T 1q2l_A 402 EHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEP 441 (939)
T ss_dssp GGTTTTTTCCCCCCHHHHHHHHHHCSGGGCEEEEECTTCC
T ss_pred HHHhcCchhhhccCHHHHHHHHHhcCHHHcEEEEEcCCCC
Confidence 2333445679999999999999884448899999998764
No 14
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=1.5e-41 Score=383.63 Aligned_cols=385 Identities=17% Similarity=0.144 Sum_probs=313.9
Q ss_pred CCCceEEEEcCCCcEEEEecCC-CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCCh-HHHHHHHHHcCCeee
Q 011279 75 EPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH-LRIVREVEAIGGNVQ 152 (489)
Q Consensus 75 ~~~~~~~~~L~NGl~V~~~~~~-~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~-~~l~~~l~~~g~~~~ 152 (489)
+...++..+|+||++|++.+.+ .+.+.+.+++++|+++|+++..|++||+|||+|.||.+++. .++.++++.+|+.+|
T Consensus 31 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~N 110 (990)
T 3cww_A 31 DKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSN 110 (990)
T ss_dssp CCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCcee
Confidence 4467899999999999965544 57999999999999999999999999999999999999987 799999999999999
Q ss_pred EeeccceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcCChhHHHHHHHHHHhc-CCCCCCCC
Q 011279 153 ASASREQMGYSFDALKTYVPEML---------------------TKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPL 210 (489)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~ 210 (489)
++|+.|+|.|.+++++++++.+| .+|.+|++...++|...+.+.+...+| +|||+++.
T Consensus 111 A~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~ 190 (990)
T 3cww_A 111 AFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFG 190 (990)
T ss_dssp EEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCC
T ss_pred EEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCC
Confidence 99999999999999999999888 667788888778899899888888889 99999999
Q ss_pred CCChhhhccC-------CHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCCC--CCCcCCC--c
Q 011279 211 LAPESAINRL-------NSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTGG--D 278 (489)
Q Consensus 211 ~g~~~~l~~i-------~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~~--~~~~~~~--~ 278 (489)
+|+.+.|..+ +.++|++||++||+|+||+|+++| +++++++++++++|+.||....+... .+++... .
T Consensus 191 ~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 270 (990)
T 3cww_A 191 TGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 270 (990)
T ss_dssp SCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSSCGGGSS
T ss_pred CCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCCCCChHHcC
Confidence 9999999999 999999999999999999999999 99999999999999999876433211 1122111 1
Q ss_pred eEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecc-
Q 011279 279 YRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI- 357 (489)
Q Consensus 279 ~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~- 357 (489)
..+......+++++.++|..|. ..+..+..++.+++.+||+++. .+ |+..||+ .|++|+++++...
T Consensus 271 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~lLg~~~~----------~s-l~~~Lr~-~g~~~~~~a~~~~~ 337 (990)
T 3cww_A 271 QLYKIVPIKDIRNLYVTFPIPD-LQKYYKSNPGHYLGHLIGHEGP----------GS-LLSELKS-KGWVNTLVGGQKAG 337 (990)
T ss_dssp EEEEECCSSSCCEEEEEEEECC-CGGGTTTCHHHHHHHHHTCCST----------TC-HHHHHHH-TTSCSCEEEEEEEE
T ss_pred eEEEEEECCCCcEEEEEEEcCC-hhhhhhhCHHHHHHHHhcCCCC----------Cc-HHHHHHH-CCCcceeeeccccC
Confidence 1122121226889999999986 2234567889999999986421 14 6679996 5999999987653
Q ss_pred cCCcceEEEEEEeCc---ccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHcC
Q 011279 358 YNHSGMFGIQGTTGS---DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN-LESRMVVSEDIGRQVLTYG 433 (489)
Q Consensus 358 ~~~~g~~~i~~~~~p---~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~-~es~~~~~~~i~~~~~~~g 433 (489)
..+.|.|.|++.+.+ ++.+++++.+.++|+.+++.| +++++|+++|......+... .+++..++..++.++. ..
T Consensus 338 ~~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 415 (990)
T 3cww_A 338 ARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEG-PQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILH-YY 415 (990)
T ss_dssp ETTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTT-TS
T ss_pred CCCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHh-hC
Confidence 455789999999765 489999999999999998888 99999999998877777653 4567777777766542 32
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHhccCCceEEEEcCCC
Q 011279 434 ERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVI 474 (489)
Q Consensus 434 ~~~~~~~~~~~i~~vT~edI~~~a~~~l~~~~~~~v~G~~~ 474 (489)
.+.....+.+.|+++|++||+++++.+..++.+++++|+..
T Consensus 416 ~~~~~~~~~~~i~~~t~~~i~~~~~~l~~~~~~~~~~~p~~ 456 (990)
T 3cww_A 416 PLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSF 456 (990)
T ss_dssp CGGGTTTTTTCCCCCCHHHHHHHHTTCSGGGCEEEEECGGG
T ss_pred CHHHHhccchhhhcCCHHHHHHHHHhcCHhHEEEEEEcCCC
Confidence 22222334477999999999999997555777888888743
No 15
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=3.3e-41 Score=380.76 Aligned_cols=382 Identities=12% Similarity=0.075 Sum_probs=305.2
Q ss_pred CceEEEEcCCCcEEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHH-HHHHHH-cCCeeeEe
Q 011279 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI-VREVEA-IGGNVQAS 154 (489)
Q Consensus 77 ~~~~~~~L~NGl~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l-~~~l~~-~g~~~~~~ 154 (489)
..++..+|+||++|++.+++.... ++.+|++.|+++..|++||+|||+|+||.+++..++ .+.+.. .|+.+|++
T Consensus 36 ~~~~~~~l~nGl~v~~~~~~~~~~----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~ 111 (995)
T 2fge_A 36 KAILFKHKKTGCEVMSVSNEDENK----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAF 111 (995)
T ss_dssp EEEEEEETTTCCEEEEEECSCSSE----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCE
T ss_pred eEEEEEECCCCCEEEEEEcCCCcc----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceee
Confidence 356678999999999766665432 367799999999999999999999999999998774 444554 68899999
Q ss_pred eccceEEEEEEccC-CCHHHHH---------------------H-----------------HHHHHHHhhcCChhHHHHH
Q 011279 155 ASREQMGYSFDALK-TYVPEML---------------------T-----------------KVKSEISEVSNNPQSLLLE 195 (489)
Q Consensus 155 ~~~~~~~~~~~~~~-~~l~~~l---------------------~-----------------~v~~el~~~~~~p~~~~~~ 195 (489)
|+.|+|.|.+++.. ++++.++ + +|.+|++...++|..++.+
T Consensus 112 T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~ 191 (995)
T 2fge_A 112 TYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGR 191 (995)
T ss_dssp ECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHH
T ss_pred ECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHH
Confidence 99999999998753 4666666 2 5666788888899999999
Q ss_pred HHHHHhc-CCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCC--CCC--CCCC
Q 011279 196 AIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLP--SIH--PREE 269 (489)
Q Consensus 196 ~l~~~~~-~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp--~~~--~~~~ 269 (489)
.+.+.+| +|||+++.+|++++|.+++.++|++||++||+|+||+|+++| +|+++++++++++|+.|| ... ....
T Consensus 192 ~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~ 271 (995)
T 2fge_A 192 IAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIK 271 (995)
T ss_dssp HHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCC
T ss_pred HHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccC
Confidence 9999999 999999999999999999999999999999999999999999 999999999999999998 432 1111
Q ss_pred CCCCcCCCc-e--EEec---CCCCCceEEEEEeecCCCCC-CCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHH
Q 011279 270 PKSVYTGGD-Y--RCQA---DSGDQLTHFVLAFELPGGWH-KDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVL 342 (489)
Q Consensus 270 ~~~~~~~~~-~--~~~~---~~~~~~~~v~l~~~~~~~~~-~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR 342 (489)
..+.+.... . .+.. +.+.+++++.++|.+|. .. +.++..++.+|+.+|+++. .|||++.||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~a~~vl~~~Lg~~~-----------~S~L~~~l~ 339 (995)
T 2fge_A 272 FQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSE-KPLDLQTQLALGFLDHLMLGTP-----------ASPLRKILL 339 (995)
T ss_dssp CCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCS-SCCCHHHHHHHHHHHHHHHSST-----------TSHHHHHHH
T ss_pred CCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCC-CcCCHHHHHHHHHHHHHHcCCC-----------CCHHHHHHH
Confidence 112332221 1 1211 22237899999999986 22 3578999999999998753 499999999
Q ss_pred HhCCCEEEEEEe-ecccCCcceEEEE-EEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc--CCh
Q 011279 343 NEFPQVQSFSAF-SNIYNHSGMFGIQ-GTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL--ESR 418 (489)
Q Consensus 343 ~~~g~~y~~~a~-~~~~~~~g~~~i~-~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~--es~ 418 (489)
++ |++|++.++ +..+.+.+.|.|. ..+++++.+++++.+.++|+++++.| ++++||+++|++++..+.... +++
T Consensus 340 e~-gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g-~~~~el~~ak~~~~~~~~~~~~~~~~ 417 (995)
T 2fge_A 340 ES-GLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAEEG-FDNDAVEASMNTIEFSLRENNTGSFP 417 (995)
T ss_dssp HT-TSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCCCTTSC
T ss_pred hc-CCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhccCCCCc
Confidence 86 999999876 5555557899986 46899999999999999999999888 999999999999999887654 233
Q ss_pred H--HHHHHHHHHHHHcCCCCCHHHHHHHHhcCCH----H----HHHHHHHHhcc-C-CceEEEEcCCCCC
Q 011279 419 M--VVSEDIGRQVLTYGERKPVEHFLKTVEGVTA----K----DIASVAQKLLS-S-PLTMASYGDVINV 476 (489)
Q Consensus 419 ~--~~~~~i~~~~~~~g~~~~~~~~~~~i~~vT~----e----dI~~~a~~~l~-~-~~~~~v~G~~~~l 476 (489)
. .++..++..++..+.+....++.+.|+++|. + +|++++++||. + +.++++++|....
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~~ 487 (995)
T 2fge_A 418 RGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEK 487 (995)
T ss_dssp HHHHHHHHHHHHHTTTSCSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEEEEEEEETTH
T ss_pred cHHHHHHHHHHHHhcCCChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCCCceEEEEEEcCccH
Confidence 4 4567777777656666655556666776666 8 89999999997 3 4677777776543
No 16
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=1.6e-39 Score=364.48 Aligned_cols=384 Identities=13% Similarity=0.092 Sum_probs=302.7
Q ss_pred CCceEEEEcCCCcEEEEecCCCC-eEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHH--cCCeee
Q 011279 76 PGKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA--IGGNVQ 152 (489)
Q Consensus 76 ~~~~~~~~L~NGl~V~~~~~~~~-~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~--~g~~~~ 152 (489)
.+.++..+|+||++|++.+++.+ .+. ..+.+|++.++++..|++|++|||+|+||++++..++...++. .|+.+|
T Consensus 84 ~~~~~~~~l~nGl~vl~i~~~~~~~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lN 161 (1193)
T 3s5m_A 84 MTYTVYQHKKAKTQVISLGTNDPLDVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLN 161 (1193)
T ss_dssp EEEEEEEETTTCCEEEEEEECCTTCCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEE
T ss_pred ccceEEEECCCCCEEEEEECCCCCeEE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEE
Confidence 35678889999999996555543 222 3355678889999999999999999999999999999999998 889999
Q ss_pred EeeccceEEEEEEccC-CCHHHHH---------------H-------------------------------------HHH
Q 011279 153 ASASREQMGYSFDALK-TYVPEML---------------T-------------------------------------KVK 179 (489)
Q Consensus 153 ~~~~~~~~~~~~~~~~-~~l~~~l---------------~-------------------------------------~v~ 179 (489)
++|+.|+|.|.+++++ ++++.++ . +|.
T Consensus 162 A~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~ 241 (1193)
T 3s5m_A 162 AYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVY 241 (1193)
T ss_dssp EEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHH
T ss_pred eEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHH
Confidence 9999999999999887 7887766 1 356
Q ss_pred HHHHhhcCChhHHHHHHHHHHhc-CCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHh
Q 011279 180 SEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPL 257 (489)
Q Consensus 180 ~el~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~ 257 (489)
+|++...++|..++.+.+.+.+| +|||+++..|++++|..++.++|++||++||+|+|++|+++| +++++++++++++
T Consensus 242 ~E~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~ 321 (1193)
T 3s5m_A 242 NEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQY 321 (1193)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHH
Confidence 67777789999999999999999 999999999999999999999999999999999999999999 9999999999999
Q ss_pred hCCCCCCCCCC----C-C-CCCcCCC-ceEEec--CCCCCceEEEEEeecCCC--C-CC---------------------
Q 011279 258 LSDLPSIHPRE----E-P-KSVYTGG-DYRCQA--DSGDQLTHFVLAFELPGG--W-HK--------------------- 304 (489)
Q Consensus 258 ~~~lp~~~~~~----~-~-~~~~~~~-~~~~~~--~~~~~~~~v~l~~~~~~~--~-~~--------------------- 304 (489)
|+.||..+.+. . + .+...+. .+.+.. ..+.+++++.++|..|+. . .+
T Consensus 322 f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~ 401 (1193)
T 3s5m_A 322 LGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSH 401 (1193)
T ss_dssp HTTCCGGGCCCCCCCCCCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCC
T ss_pred hccCCCCCCCcccccccCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCcccccccccccccccccccccccccccc
Confidence 99998654311 1 1 1122222 222221 122378999999999841 0 12
Q ss_pred --------CcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEE-EeecccCCcceEEEEE-EeCccc
Q 011279 305 --------DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFS-AFSNIYNHSGMFGIQG-TTGSDF 374 (489)
Q Consensus 305 --------~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~-a~~~~~~~~g~~~i~~-~~~p~~ 374 (489)
.++..++.||+.+|+||.+ ||||+.||++ |++|++. +.+......+.|.|++ .+++++
T Consensus 402 ~~~~~~~~~~d~~al~vL~~iLggg~s-----------SrL~~~L~e~-gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~ 469 (1193)
T 3s5m_A 402 SSDLSLENPTDYFVLLIINNLLIHTPE-----------SVLYKALTDC-GLGNNVIDRGLNDSLVQYIFSIGLKGIKRNN 469 (1193)
T ss_dssp CSTTCCCSHHHHHHHHHHHHHHHSSTT-----------SHHHHHHHHH-CSCSEEEEEEEECSSSSCEEEEEEEEECTTC
T ss_pred cccccccCccHHHHHHHHHHHHCCCCC-----------CHHHHHHHhc-CCeeeecccccccccCCcEEEEEEecCChhh
Confidence 4788999999999998744 9999999985 9999998 5666666678899987 466644
Q ss_pred --------H-HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHh-cCChHHH--HHHHHHHHHHcCCCCC---HH
Q 011279 375 --------V-SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN-LESRMVV--SEDIGRQVLTYGERKP---VE 439 (489)
Q Consensus 375 --------~-~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~-~es~~~~--~~~i~~~~~~~g~~~~---~~ 439 (489)
+ +++.+.+.++|++++++| |+++||+++|+++..++... ..++..+ +..+...+++.|++.. .+
T Consensus 470 ~~~~~~~~~~~~~~~~I~~~L~~l~~~g-i~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~~ 548 (1193)
T 3s5m_A 470 EKIKNFDKVHYEVEDVIMNALKKVVKEG-FNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEFE 548 (1193)
T ss_dssp TTCSCGGGHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5 699999999999999988 99999999999999988763 3444433 4566667777777655 45
Q ss_pred HHHHHHhcCC---HHHHHHHHHHhcc-CCc-eEEEEcCCC
Q 011279 440 HFLKTVEGVT---AKDIASVAQKLLS-SPL-TMASYGDVI 474 (489)
Q Consensus 440 ~~~~~i~~vT---~edI~~~a~~~l~-~~~-~~~v~G~~~ 474 (489)
+.++.+++.+ ++++++++++||. ++. +++++-|..
T Consensus 549 ~~l~~l~~~~~~~~~~~~~li~~yll~n~~~~~~~~~P~~ 588 (1193)
T 3s5m_A 549 KYLNIVKNKIKNEPMYLEKFVEKHFINNAHRSVILLEGDE 588 (1193)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHTTTCCCEEEEEEEEES
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHhccCCceEEEEEEcCC
Confidence 5555555543 4599999999986 433 556665554
No 17
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=5e-39 Score=321.08 Aligned_cols=326 Identities=21% Similarity=0.280 Sum_probs=265.6
Q ss_pred cEEEEecCCCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEeeccceEEEEEEcc
Q 011279 88 VKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDAL 167 (489)
Q Consensus 88 l~V~~~~~~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 167 (489)
+||++++++.|.+++++++++|+++|+ ..|++||++||+|+||++++..++.+.++..|+.++++++++++.|+++++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e~--~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~ 78 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFL 78 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGCS--STTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCCC--cccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEec
Confidence 689999988999999999999999973 789999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHH----------------------HHHHHHHHhhcCChhHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHHH
Q 011279 168 KTYVPEML----------------------TKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLL 225 (489)
Q Consensus 168 ~~~l~~~l----------------------~~v~~el~~~~~~p~~~~~~~l~~~~~~~~~~~~~~g~~~~l~~i~~~~l 225 (489)
+++++.++ +.+++|++...++|...+.+.+++.+|++||+++.. .++|++++.++|
T Consensus 79 ~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~~--~~~l~~it~~~l 156 (352)
T 3cx5_B 79 KDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLL--YDGVERVSLQDI 156 (352)
T ss_dssp GGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCSS--CCSSSCCCHHHH
T ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCccc--hhhhccCCHHHH
Confidence 99999888 233456777778999999999999999889999874 689999999999
Q ss_pred HHHHHhhCCCCCeEEEEecCCHHHHHHHH-HHhhCCCCCCCCCCC--CCCCcCCCceEEecCCCCCceEEEEEeecCCCC
Q 011279 226 EEFVAENYTGPRMVLAASGVEHDQLVSVA-EPLLSDLPSIHPREE--PKSVYTGGDYRCQADSGDQLTHFVLAFELPGGW 302 (489)
Q Consensus 226 ~~f~~~~y~~~~~~l~ivGvd~~~l~~~i-~~~~~~lp~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~ 302 (489)
++||+++|.|+||+++++|++++++++++ +++|+.||....+.. ..+.+.++...+.. . .++.+.+++.
T Consensus 157 ~~f~~~~y~~~n~~l~v~G~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~----- 228 (352)
T 3cx5_B 157 KDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVRF-I--GDSVAAIGIP----- 228 (352)
T ss_dssp HHHHHHHCCGGGEEEEEESSCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCCSCEEEEEC-S--SSEEEEEEEE-----
T ss_pred HHHHHHhCCcCcEEEEEeCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccCCeEEEec-C--CCceEEEecC-----
Confidence 99999999999999999999999999999 899999986543321 11233344444322 2 5666666542
Q ss_pred CCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEEEeCcccHHHHHHHH
Q 011279 303 HKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLA 382 (489)
Q Consensus 303 ~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~i~~~ 382 (489)
.++++.+++.|++.+|| . +||++.|++ +.++...+.+.|.|.|++.++ +.+++.+.+
T Consensus 229 ~~~~~~~~l~vl~~iLg---------------~----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~--~~~~~~~~i 285 (352)
T 3cx5_B 229 VNKASLAQYEVLANYLT---------------S----ALSELSGLI--SSAKLDKFTDGGLFTLFVRDQ--DSAVVSSNI 285 (352)
T ss_dssp ECTTTHHHHHHHHHHHH---------------S----TTSTTGGGC--SEEEEEEETTEEEEEEEEEES--CHHHHHHHH
T ss_pred CCChhHHHHHHHHHHhC---------------c----chhcccCce--EEEeecCcCcceeEEEEEEeC--CHHHHHHHH
Confidence 35678999999999998 3 578888886 555555567789999999997 344444444
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCHHHHHHHHHHhcc
Q 011279 383 ARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLS 462 (489)
Q Consensus 383 ~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~~~i~~vT~edI~~~a~~~l~ 462 (489)
.+++.+ + ++++||+++|+.++.++..++++. |...+. .|++||.+ + |
T Consensus 286 ~~~l~~----~-~t~~el~~ak~~~~~~~~~~~~~~--------------~~~~~~-----~i~~vt~~-------~-~- 332 (352)
T 3cx5_B 286 KKIVAD----L-KKGKDLSPAINYTKLKNAVQNESV--------------SSPIEL-----NFDAVKDF-------K-L- 332 (352)
T ss_dssp HHHHHH----H-HSCEECGGGHHHHHHHHHHHCCST--------------TCCCCS-----CGGGCCEE-------C-C-
T ss_pred HHHHHh----c-CCHHHHHHHHHHHHHHHHhhhhcc--------------CCccce-----eeeeeeHh-------h-c-
Confidence 455433 4 899999999999999999998873 333222 59999932 2 5
Q ss_pred CCceEEEEcCCCCCCCHHH
Q 011279 463 SPLTMASYGDVINVPSYDA 481 (489)
Q Consensus 463 ~~~~~~v~G~~~~lp~~~~ 481 (489)
++++++++||..++|.+++
T Consensus 333 ~~~~~~~~G~~~~~~~~~~ 351 (352)
T 3cx5_B 333 GKFNYVAVGDVSNLPYLDE 351 (352)
T ss_dssp CSCEEEEEESGGGSCCGGG
T ss_pred CCceEEEEccccccCcccc
Confidence 8999999999999998875
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=2e-31 Score=299.34 Aligned_cols=369 Identities=9% Similarity=0.051 Sum_probs=285.1
Q ss_pred eEEEEcCCCcEEEEecCCC----CeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEe
Q 011279 79 TKISTLPNGVKIASETSVS----PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (489)
Q Consensus 79 ~~~~~L~NGl~V~~~~~~~----~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (489)
.+.++|+||++|++.+++. |.+.|.+.+.+|...+++...|+++++.+|+..|+.++ ....+..|.+++++
T Consensus 500 p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~-----~~~~~l~G~~~~~~ 574 (939)
T 1q2l_A 500 PELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQL-----SNQASVGGISFSTN 574 (939)
T ss_dssp CEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHH-----HHHHHHTTEEEEEE
T ss_pred CEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHH-----hhHHHHcCcEEEEe
Confidence 3678899999999876652 49999999999999988778899999999998776544 22344467777778
Q ss_pred eccceEEEEEEccCCCHHHHH---------------------HHHHHHHHhh-cCChhHHHHHHHHHHhcCCCCCCCCCC
Q 011279 155 ASREQMGYSFDALKTYVPEML---------------------TKVKSEISEV-SNNPQSLLLEAIHSAGYSGALANPLLA 212 (489)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~-~~~p~~~~~~~l~~~~~~~~~~~~~~g 212 (489)
. .+...+.+++.+++++.+| +.++.++++. .++|...+.+.+...+|++ + .+..+
T Consensus 575 ~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~-~-~~~~~ 651 (939)
T 1q2l_A 575 A-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVP-Y-FSRDE 651 (939)
T ss_dssp E-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSS-C-CCHHH
T ss_pred e-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCC-C-CCHHH
Confidence 8 8999999999999999888 3444555555 4578888888888877743 2 44447
Q ss_pred ChhhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHHHHHhhCCCCCCCCCCCCC--CCcCCC-ceEEecCCCCC
Q 011279 213 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVYTGG-DYRCQADSGDQ 288 (489)
Q Consensus 213 ~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~i~~~~~~lp~~~~~~~~~--~~~~~~-~~~~~~~~~~~ 288 (489)
+.+.|++++.+++++||+++|.+.+++++++| +++++++++++++++.||......... ....++ ...+....+..
T Consensus 652 ~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (939)
T 1q2l_A 652 RRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNST 731 (939)
T ss_dssp HHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCCCCCEEECCCSCEEEEEEECCSSS
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCccccccceEEeCCCceEEEecCCCCC
Confidence 88999999999999999999999999999999 999999999999999887543222111 112223 22222222223
Q ss_pred ceEE-EEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeeccc-CCcce-EE
Q 011279 289 LTHF-VLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIY-NHSGM-FG 365 (489)
Q Consensus 289 ~~~v-~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~-~~~g~-~~ 365 (489)
++.+ .+.|..+. .+.++.+.+.+|..++. ++||++||++.|++|+|+++.... ...|. |.
T Consensus 732 ~~~~~~~~~~~~~--~~~~~~~~~~lL~~~~~---------------s~lf~~LRek~gl~Y~v~s~~~~~~~~~g~~~~ 794 (939)
T 1q2l_A 732 DSALAAVFVPTGY--DEYTSSAYSSLLGQIVQ---------------PWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFL 794 (939)
T ss_dssp CEEEEEEEECSSC--CHHHHHHHHHHHHHHHH---------------HHHTHHHHTSCCSSSCEEEEEEEETTEEEEEEE
T ss_pred CceeEEEEEecCC--CCHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhCceeeeeEeecCCeeEEEEE
Confidence 4455 56665542 34445555666665554 999999999999999999987633 34453 66
Q ss_pred EEE-EeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC-CCHHHHHH
Q 011279 366 IQG-TTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER-KPVEHFLK 443 (489)
Q Consensus 366 i~~-~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~-~~~~~~~~ 443 (489)
|+. .++|+++.++++.+.+++.++.+ | +|++||+++|+.+++++....++....+..+|..++..+.. ...+++.+
T Consensus 795 i~s~~~~p~~~~~~i~~~~~~~~~~~~-~-~t~~el~~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~~~~d~~~~~~~ 872 (939)
T 1q2l_A 795 LQSNDKQPSFLWERYKAFFPTAEAKLR-A-MKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVA 872 (939)
T ss_dssp EEESSSCHHHHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHHH
Confidence 777 68899999999999999999874 6 99999999999999999999999988888888887755543 45688999
Q ss_pred HHhcCCHHHHHHHHHHhcc--CCc--eEEEEcCCC
Q 011279 444 TVEGVTAKDIASVAQKLLS--SPL--TMASYGDVI 474 (489)
Q Consensus 444 ~i~~vT~edI~~~a~~~l~--~~~--~~~v~G~~~ 474 (489)
.|++||++||++++++++. +.. ++.++|+..
T Consensus 873 ~i~~vT~~dv~~~a~~~l~~~~~~~l~v~v~G~~~ 907 (939)
T 1q2l_A 873 QIKLLTPQKLADFFHQAVVEPQGMAILSQISGSQN 907 (939)
T ss_dssp HHHTCCHHHHHHHHHHHTTSCSSEEEEEEECCSSH
T ss_pred HHhcCCHHHHHHHHHHHhcCCCCCEEEEEEecCCC
Confidence 9999999999999999876 333 456999974
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.98 E-value=3.7e-31 Score=298.68 Aligned_cols=374 Identities=11% Similarity=0.007 Sum_probs=279.9
Q ss_pred CceEEEEcCCCcEEEEecCC-CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhc-ccCCCCChHHHHHHHHHcCCeeeE-
Q 011279 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAF-RSTRNRSHLRIVREVEAIGGNVQA- 153 (489)
Q Consensus 77 ~~~~~~~L~NGl~V~~~~~~-~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~-~gt~~~s~~~l~~~l~~~g~~~~~- 153 (489)
.++++.+ .||++|++.+.+ ++.+++.+++++|+. +++..|.++++.++++ .||++++..++.+.++...|.+++
T Consensus 552 ~~~~~~~-~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~ 628 (995)
T 2fge_A 552 VPTEVGD-INGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVY 628 (995)
T ss_dssp CCCEEEE-SSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEE
T ss_pred CCceeee-cCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEee
Confidence 4455444 899999976665 569999999999886 4567899999988877 599999999999999966665665
Q ss_pred ----eecc-----ceEEEEEEccCCCHHHHH--------------H-HHHH-------HHHhhc-CChhHHHHHHHHHHh
Q 011279 154 ----SASR-----EQMGYSFDALKTYVPEML--------------T-KVKS-------EISEVS-NNPQSLLLEAIHSAG 201 (489)
Q Consensus 154 ----~~~~-----~~~~~~~~~~~~~l~~~l--------------~-~v~~-------el~~~~-~~p~~~~~~~l~~~~ 201 (489)
+++. +.+.|++++++++++.++ . .+.. ++++.. +++...+...++...
T Consensus 629 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~ 708 (995)
T 2fge_A 629 PLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAML 708 (995)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT
T ss_pred ccccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhC
Confidence 5544 889999999999999888 2 2222 233332 345555566665543
Q ss_pred c-CCCCCCCC-----CCCh--------hhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCH-HHHHHHHHHhhCCC-CCC
Q 011279 202 Y-SGALANPL-----LAPE--------SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEH-DQLVSVAEPLLSDL-PSI 264 (489)
Q Consensus 202 ~-~~~~~~~~-----~g~~--------~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~-~~l~~~i~~~~~~l-p~~ 264 (489)
+ .++++... .+.. +.++.+ .++|++||+++|.+++|+++++| +++ +++.++++++|+.| |..
T Consensus 709 ~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~ 787 (995)
T 2fge_A 709 NIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENP 787 (995)
T ss_dssp CHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSC
T ss_pred ChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccC
Confidence 3 34432111 1111 557889 99999999999999999999999 995 99999999999999 754
Q ss_pred CCCCCCCCCcCCCceEEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHh
Q 011279 265 HPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNE 344 (489)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~ 344 (489)
..+.. ...+..+........+....++..++.... +++++..++.|++.+|++ ++||++||+
T Consensus 788 ~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~d~~al~vl~~iLg~--------------~~L~~~iRe- 849 (995)
T 2fge_A 788 SGGLV-TWDGRLPLRNEAIVIPTQVNYVGKAGNIYS--TGYELDGSAYVISKHISN--------------TWLWDRVRV- 849 (995)
T ss_dssp SSCSC-CCCCCCCCCCEEEECSCSSBEEEEEEEGGG--GTCCCCTHHHHHHHHHHH--------------THHHHHTTT-
T ss_pred CCCCC-cccccCCccceEEEecCceEEEEEecCCCC--CCCcccHHHHHHHHHHCC--------------CccHHHhhh-
Confidence 43221 111212221111112225566666766554 688999999999999985 689999999
Q ss_pred CCCEEEEEEeecccCCcceEE-EEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 011279 345 FPQVQSFSAFSNIYNHSGMFG-IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSE 423 (489)
Q Consensus 345 ~g~~y~~~a~~~~~~~~g~~~-i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~ 423 (489)
.|++|+++++... .|.|. ++...+| +..++++.+.+.+..+...+ +|++||++||..+++++. ...++.....
T Consensus 850 ~g~aYg~~s~~~~---~G~~~~~~s~~dp-~~~~~~~~~~~~~~~l~~~~-~te~el~~ak~~li~~~~-~~~~~~~~~~ 923 (995)
T 2fge_A 850 SGGAYGGFCDFDS---HSGVFSYLSYRDP-NLLKTLDIYDGTGDFLRGLD-VDQETLTKAIIGTIGDVD-SYQLPDAKGY 923 (995)
T ss_dssp TTCCSEEEEEEET---TTTEEEEEEESBS-CSHHHHHHHHTHHHHHHTCC-CCHHHHHHHHHHHHHHHT-CCCCHHHHHH
T ss_pred cCCCcccceEeCC---CccEEEEEEEcCC-CHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcc-CCCCHHHHHH
Confidence 8999999998765 58898 8888888 58888888888888777655 999999999999999984 4566666666
Q ss_pred HHHHHHHHcCC-CCCHHHHHHHHhcCCHHHHHHHHHHhcc--CCceEEEEcCCCCCCCH
Q 011279 424 DIGRQVLTYGE-RKPVEHFLKTVEGVTAKDIASVAQKLLS--SPLTMASYGDVINVPSY 479 (489)
Q Consensus 424 ~i~~~~~~~g~-~~~~~~~~~~i~~vT~edI~~~a~~~l~--~~~~~~v~G~~~~lp~~ 479 (489)
..+..++ .|. ....+++.+.|.+||++||+++|++|+. .+.+++++|+..+++..
T Consensus 924 ~~~~~~~-~g~~~~~~~~~~~~i~~vT~edv~~~a~~~~~~~~~~~~~vvG~~~~i~~~ 981 (995)
T 2fge_A 924 SSLLRHL-LGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDAA 981 (995)
T ss_dssp HHHHHHH-TTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHH
T ss_pred HHHHHHH-cCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCEEEECCHHHHHhh
Confidence 6655554 454 3456788999999999999999999998 48999999998766554
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.97 E-value=1.9e-28 Score=276.64 Aligned_cols=371 Identities=10% Similarity=0.061 Sum_probs=287.0
Q ss_pred EEEEcCCCcEEEEecCC---CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEeec
Q 011279 80 KISTLPNGVKIASETSV---SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (489)
Q Consensus 80 ~~~~L~NGl~V~~~~~~---~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (489)
..++++||++|+..+.+ .|...+.+.+.+|...+++...++++++..|+..+ ++..++...+ .|.+++++++
T Consensus 520 ~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~---~~~~~~~~~l--~G~~~~~~~~ 594 (990)
T 3cww_A 520 ALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS---LNEYAYAAEL--AGLSYDLQNT 594 (990)
T ss_dssp EEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH---HHHHHHHHHH--TTEEEEEEEE
T ss_pred eeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH---HHHhhhHHHh--CCeEEEEEEc
Confidence 66889999999976555 46888888888887777777889999999997653 3555565555 4778999999
Q ss_pred cceEEEEEEccCCCHHHHH---------------------HHHHHHHHhhcC-ChhHHHHHHHHHHhcCCCCCCCCCCCh
Q 011279 157 REQMGYSFDALKTYVPEML---------------------TKVKSEISEVSN-NPQSLLLEAIHSAGYSGALANPLLAPE 214 (489)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l---------------------~~v~~el~~~~~-~p~~~~~~~l~~~~~~~~~~~~~~g~~ 214 (489)
.+.+.+++++++++++.++ +.++..+++... +|...+.+.+...++.+++.. .++.
T Consensus 595 ~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~--~~~~ 672 (990)
T 3cww_A 595 IYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTK--DELK 672 (990)
T ss_dssp TTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBSSCCCH--HHHH
T ss_pred CCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCCCCCCH--HHHH
Confidence 9999999999999999888 223334444444 899999999988887555542 2467
Q ss_pred hhhccCCHHHHHHHHHhhCCCCCeEEEEec-CCHHHHHHH---HHHhhCCCCCCCCCC------CCCCCcCCC-ceEEe-
Q 011279 215 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSV---AEPLLSDLPSIHPRE------EPKSVYTGG-DYRCQ- 282 (489)
Q Consensus 215 ~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd~~~l~~~---i~~~~~~lp~~~~~~------~~~~~~~~~-~~~~~- 282 (489)
+.|+.++.++|++|++++|.+.+++++++| ++.+++.++ ++++|+.+|...... ........+ ...+.
T Consensus 673 ~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (990)
T 3cww_A 673 EALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQQ 752 (990)
T ss_dssp HHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCGGGCCCCCBBCCCTTEEEEEEE
T ss_pred HHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCCchhhccccceEEcCCCCeEEEEe
Confidence 899999999999999999999999999999 999999888 778888766331111 011111222 22221
Q ss_pred cCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcc
Q 011279 283 ADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSG 362 (489)
Q Consensus 283 ~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g 362 (489)
......++.+.+.+..+. ++.++..++.||+.+|. ++||++||++.+++|++++......+..
T Consensus 753 ~~~~~~~~~v~~~~~~~~--~~~~~~~~l~ll~~il~---------------~~lf~~LRek~~lgY~v~s~~~~~~g~~ 815 (990)
T 3cww_A 753 RNEVHNNSGIEIYYQTDM--QSTSENMFLELFAQIIS---------------EPAFNTLRTKEQLGYIVFSGPRRANGIQ 815 (990)
T ss_dssp ECSSCSSEEEEEEEEEEE--CCHHHHHHHHHHHHHHH---------------HHHHHHHTTTTCCCSEEEEEEEEETTEE
T ss_pred cCCCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHHH---------------HHHHHHHHhccCCcEEEEEEEEeeCCEE
Confidence 222236777777777654 57789999999999997 9999999999999999999876543322
Q ss_pred --eEEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC-CCHH
Q 011279 363 --MFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER-KPVE 439 (489)
Q Consensus 363 --~~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~-~~~~ 439 (489)
.|.++..++|+++.++++.+.+++..+.+ + +|++||+++|..+++++....++.......++..++..+.. ...+
T Consensus 816 ~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~-~-~te~el~~~k~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~ 893 (990)
T 3cww_A 816 GLRFIIQSEKPPHYLESRVEAFLITMEKSIE-D-MTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDN 893 (990)
T ss_dssp EEEEEEEESSCHHHHHHHHHHHHHHHHHHHH-H-SCHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHTTCCCTTHHH
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHHHHHH-h-cCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCCChHH
Confidence 23346667899999999999999999887 6 99999999999999999998889888888788777655433 4568
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcc------CCceEEEEcCCCCC
Q 011279 440 HFLKTVEGVTAKDIASVAQKLLS------SPLTMASYGDVINV 476 (489)
Q Consensus 440 ~~~~~i~~vT~edI~~~a~~~l~------~~~~~~v~G~~~~l 476 (489)
++.+.|++||++||++++++++. .+.+++++|+..+.
T Consensus 894 ~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~v~v~g~~~~~ 936 (990)
T 3cww_A 894 TEVAYLKTLTKADIIKFYKEMLAVDAPRRHKVSVHVLAREMDS 936 (990)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHTSTTCTTCEEEEEEEECTTC--
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccCCCCCEEEEEEECCCCcc
Confidence 89999999999999999999987 35789999998755
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.94 E-value=4.2e-26 Score=256.17 Aligned_cols=361 Identities=12% Similarity=0.047 Sum_probs=257.9
Q ss_pred CCCcEEEEecCC-CCeEEEEEEEccccCCCCCCCCcHHHHHHHhhc-ccCCCCChHHHHHHHHHcCCeeeEeec------
Q 011279 85 PNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAF-RSTRNRSHLRIVREVEAIGGNVQASAS------ 156 (489)
Q Consensus 85 ~NGl~V~~~~~~-~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~-~gt~~~s~~~l~~~l~~~g~~~~~~~~------ 156 (489)
.||++|+..+.+ +..+++.++++.|... .+..+..+|+..++. .||++++..++...++.++|+++++++
T Consensus 724 ~~gv~v~~~~~~TNGIvY~~l~fdl~~l~--~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~ 801 (1193)
T 3s5m_A 724 EGNVPILVYEMPTTGIVYLQFVFSLDHLT--VDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDD 801 (1193)
T ss_dssp TTCEEEEEEECCCTTEEEEEEEEECTTCC--HHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCB
T ss_pred cCCeEEEEEECCCCCeEEEEEEEECCCCC--HHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccc
Confidence 489999865555 5699999999999644 446677888877765 599999999999999999999888864
Q ss_pred ----------cceEEEEEEccCCCHHHHHHHHHHHH---------------HhhcCChhHHHHHHHHHHhc---------
Q 011279 157 ----------REQMGYSFDALKTYVPEMLTKVKSEI---------------SEVSNNPQSLLLEAIHSAGY--------- 202 (489)
Q Consensus 157 ----------~~~~~~~~~~~~~~l~~~l~~v~~el---------------~~~~~~p~~~~~~~l~~~~~--------- 202 (489)
.....+++.++.++++.+++.+.+-+ ++...+-+..+...-|..+.
T Consensus 802 ~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~ 881 (1193)
T 3s5m_A 802 HLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNS 881 (1193)
T ss_dssp TTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCH
T ss_pred cccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCc
Confidence 34578999999999999983322222 22111111111111111111
Q ss_pred CCCCCCCCCCChhhh--------------ccCCHHHHHHHHHhhCCCCCeEEEEec-CC-HHHHHHHHHHhhCCCCC---
Q 011279 203 SGALANPLLAPESAI--------------NRLNSTLLEEFVAENYTGPRMVLAASG-VE-HDQLVSVAEPLLSDLPS--- 263 (489)
Q Consensus 203 ~~~~~~~~~g~~~~l--------------~~i~~~~l~~f~~~~y~~~~~~l~ivG-vd-~~~l~~~i~~~~~~lp~--- 263 (489)
.+++.....| .+.+ +.+ .++|++++++.|+++|+++.++| .+ .+++.+.++++++.|+.
T Consensus 882 ~~~~~e~~~G-l~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~ 959 (1193)
T 3s5m_A 882 KHYAHNIIYG-YENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFE 959 (1193)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHH
T ss_pred chhhhhhhCC-hHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhccc
Confidence 1111111111 1222 223 67999999999999999999999 75 47777777776665531
Q ss_pred -CCC----------CCCCC---------CCc-CCCce--EEecCCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhhcC
Q 011279 264 -IHP----------REEPK---------SVY-TGGDY--RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGG 320 (489)
Q Consensus 264 -~~~----------~~~~~---------~~~-~~~~~--~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~ 320 (489)
... ..... ... ..... .+..+. +..++..++.... ..++++.++.||+.+||+
T Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~--~v~yv~~~~~~~~--~~~~d~~al~Vl~~iLg~ 1035 (1193)
T 3s5m_A 960 ENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPT--FVNSVSMSGILFK--PGEYLDPSFTVIVAALKN 1035 (1193)
T ss_dssp HGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCC--SSBEEEEEEECSC--TTCBCCTHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccceeEecCC--cceEEEEEecCCC--CCCCchHHHHHHHHHHCc
Confidence 000 00000 000 11111 223344 8889999887765 778999999999999994
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhhC--CCCCCHH
Q 011279 321 GGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVAT--PGEVDQV 398 (489)
Q Consensus 321 ~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~~~~~p~~~~~~i~~~~~el~~l~~--~g~it~~ 398 (489)
++||++||++.| +|++++++. ..|.|.++..++|. ..+.++.+.+++..+.+ ++ +|++
T Consensus 1036 --------------~~L~~eIREkgG-AYg~~s~~~---~~G~f~~~syrdp~-~~~tl~~~~~~~~~l~~~~~~-~tee 1095 (1193)
T 3s5m_A 1036 --------------SYLWDTVRGLNG-AYGVFADIE---YDGSVVFLSARDPN-LEKTLATFRESAKGLRKMADT-MTEN 1095 (1193)
T ss_dssp --------------THHHHHHTTTTC-CSEEEEEEC---TTSEEEEEEESBSC-SHHHHHHHHTHHHHHHHHHHH-CCHH
T ss_pred --------------cHHHHHHHhcCC-eeEEEEecc---CCCcEEEEEEeCCC-HHHHHHHHHHHHHHHHhhcCC-CCHH
Confidence 799999999866 999999866 57899999888885 78888888888777765 46 9999
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCCHHHHHHHHHHhccC----CceEEEEcCC
Q 011279 399 QLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER-KPVEHFLKTVEGVTAKDIASVAQKLLSS----PLTMASYGDV 473 (489)
Q Consensus 399 eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~-~~~~~~~~~i~~vT~edI~~~a~~~l~~----~~~~~v~G~~ 473 (489)
||++||..++.++. ...++...+..++...+ +|.. ...+++.+.|.+||++||+++|++|+.. +.+++++|+.
T Consensus 1096 EL~~ak~~~~~~~d-~p~~p~~~a~~~~~~~~-~Gl~~d~~~~~~~~I~aVT~edv~~vA~~~~~~l~~~~~~~vvvG~~ 1173 (1193)
T 3s5m_A 1096 DLLRYIINTIGTID-KPRRGIELSKLSFLRLI-SNESEQDRVEFRKRIMNTKKEDFYKFADLLESKVNEFEKNIVIITTK 1173 (1193)
T ss_dssp HHHHHHHHHHHHHS-CCCCTHHHHHHHHHHHH-TTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHTHHHHTTEEEEEECH
T ss_pred HHHHHHHHHHhccc-ccCChHHHHHHHHHHHH-cCcCHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccCceEEEEcCH
Confidence 99999999999964 55566667777766654 6654 4568899999999999999999999974 6899999985
Q ss_pred CC
Q 011279 474 IN 475 (489)
Q Consensus 474 ~~ 475 (489)
.+
T Consensus 1174 ~~ 1175 (1193)
T 3s5m_A 1174 EK 1175 (1193)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.93 E-value=1.8e-24 Score=197.49 Aligned_cols=171 Identities=17% Similarity=0.139 Sum_probs=156.7
Q ss_pred CceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEEE
Q 011279 288 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 367 (489)
Q Consensus 288 ~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i~ 367 (489)
+++++.++|.+|+ .++++.+++.|++.+|+|| +.||||++||++ |++|+++++...+.+.|.|.|+
T Consensus 23 ~~~~v~~~~~~~~--~~~~d~~al~vl~~iLggg-----------~sSrL~~~lre~-gl~y~~~~~~~~~~~~g~~~i~ 88 (197)
T 3ih6_A 23 GTPLVAAMYHLPA--AGSPDFVGLDLAATILADT-----------PSSRLYHALVPT-KLASGVFGFTMDQLDPGLAMFG 88 (197)
T ss_dssp CSCEEEEEEECCC--TTSTTHHHHHHHHHHHHSS-----------TTSHHHHHHTTT-TSCSEEEEEEETTSSSCEEEEE
T ss_pred CCceEEEEEecCC--CCCCcHHHHHHHHHHHcCC-----------CCchHHHHHHhc-CceEEEEeccccccCCeEEEEE
Confidence 8999999999997 6778999999999999976 449999999986 9999999988878889999999
Q ss_pred EEeCcc-cHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCHHHHHHHHh
Q 011279 368 GTTGSD-FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVE 446 (489)
Q Consensus 368 ~~~~p~-~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~~~~~~~~~~i~ 446 (489)
+.|+|+ +.+++++.+.++|.++++.| ++++||+++|++++.++...++++..++..++++++ .|.+....++.+.|+
T Consensus 89 ~~~~~~~~~~~~~~~i~~~l~~l~~~~-it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~-~g~~~~~~~~~~~i~ 166 (197)
T 3ih6_A 89 AQLQPGMDQDKALQTLTATLESLSSKP-FSQEELERARSKWLTAWQQTYADPEKVGVALSEAIA-SGDWRLFFLQRDRVR 166 (197)
T ss_dssp EECCTTSCHHHHHHHHHHHHHCTTTSC-CCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH-TTCTTHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 999998 59999999999999999887 999999999999999999999999999999998887 476677789999999
Q ss_pred cCCHHHHHHHHHHhcc-CCceEEEEcCCC
Q 011279 447 GVTAKDIASVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 447 ~vT~edI~~~a~~~l~-~~~~~~v~G~~~ 474 (489)
+||++||++++++||. ++.++++++|..
T Consensus 167 ~vT~~dv~~~a~~~l~~~~~~~~~~~P~~ 195 (197)
T 3ih6_A 167 EAKLDDVQRAAVAYLVRSNRTEGRYIPTE 195 (197)
T ss_dssp TCCHHHHHHHHHHHSSGGGCEEEEECC--
T ss_pred hCCHHHHHHHHHHhCCccCeEEEEEeCCC
Confidence 9999999999999998 788999999854
No 23
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.16 E-value=6.6e-05 Score=75.56 Aligned_cols=169 Identities=9% Similarity=0.059 Sum_probs=113.7
Q ss_pred CceEEEEEeecCCCCCCC--cchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEE
Q 011279 288 QLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 365 (489)
Q Consensus 288 ~~~~v~l~~~~~~~~~~~--~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~ 365 (489)
+.+.+.+.+.++. ..+ .......++..++..|.. ..+| + +...-+.+..+..|..+++.. .. ....
T Consensus 24 ~~~~~~l~~~~Gs--~~e~~~~~g~ahlle~~l~~Gt~--~~~~-~-~~~~~~~~~l~~~G~~~~a~t--~~----~~t~ 91 (424)
T 3amj_B 24 PMLDVQVDFDAGS--AREPADQVGVASMTASLMDAGTG--SGKS-A-LDENAIADRLADIGARLGGGA--EA----DRAS 91 (424)
T ss_dssp SEEEEEEEESCSG--GGSCTTSTTHHHHHHHTGGGEEC--STTS-C-EEHHHHHHHHHHTTCEEEEEE--CS----SCEE
T ss_pred CEEEEEEEEecCC--ccCCCccchHHHHHHHHHHhccC--CCcc-C-CCHHHHHHHHHHhCCEEEeec--CC----CeEE
Confidence 6777778877764 332 344567788888754210 0000 0 112223444555676555433 21 2356
Q ss_pred EEEEeCcccH--HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC--CCHHHH
Q 011279 366 IQGTTGSDFV--SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHF 441 (489)
Q Consensus 366 i~~~~~p~~~--~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~--~~~~~~ 441 (489)
+++.+.+++. +.+++.+.+.+.+. .++++++++.|..++..+....+++..++.+.....+..+.+ .+. .
T Consensus 92 ~~~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~--~ 165 (424)
T 3amj_B 92 FSLRVLSSPAERNSALTILRDILAHP----TFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS--S 165 (424)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC--C
T ss_pred EEEEEeccccChhHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC--C
Confidence 6777778877 77777777766543 399999999999999999888778877776666666544332 222 5
Q ss_pred HHHHhcCCHHHHHHHHHHhcc-CCceEEEEcCCC
Q 011279 442 LKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 442 ~~~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~ 474 (489)
.+.|+++|.+|+.++.++++. .+.+++++||..
T Consensus 166 ~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~ 199 (424)
T 3amj_B 166 VATLQKISRDQLVSFHRTHYVARTAVVTLVGDIT 199 (424)
T ss_dssp HHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCC
T ss_pred HHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCC
Confidence 677899999999999999998 899999999985
No 24
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=98.15 E-value=0.00011 Score=73.97 Aligned_cols=167 Identities=8% Similarity=0.052 Sum_probs=115.8
Q ss_pred CceEEEEEeecCCCCCCCc--chHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEE
Q 011279 288 QLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 365 (489)
Q Consensus 288 ~~~~v~l~~~~~~~~~~~~--~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~ 365 (489)
+.+.+.+.|.... ..++ ......++..++..|.. ... ...+.+.+ +..|...++.... ....
T Consensus 22 ~~~~~~l~~~~Gs--~~e~~~~~G~ah~leh~lf~gt~------~~~-~~~~~~~l-~~~G~~~na~t~~------d~t~ 85 (421)
T 3hdi_A 22 RSVSIGIWVGTGS--RYESAEENGISHFLEHMFFKGTN------TRS-AQEIAEFF-DSIGGQVNAFTSK------EYTC 85 (421)
T ss_dssp SEEEEEEEESCCG--GGCCGGGTTHHHHHHHHTTSBBS------SSB-HHHHHHHH-HTTTSCEEEEECS------SCEE
T ss_pred CEEEEEEEEcccc--CCCCCCCCcHHHHHHHHhcCCCC------CCC-HHHHHHHH-HHhCCceeeeecc------ceEE
Confidence 6677778877754 4442 23455677777664321 000 01343333 5566654443331 2345
Q ss_pred EEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC--CCHHHHHH
Q 011279 366 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHFLK 443 (489)
Q Consensus 366 i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~--~~~~~~~~ 443 (489)
+++.+.+++.+++++.+.+.+.+. .++++++++.|..++..+.+..+++...+.......+..+.+ .+..-..+
T Consensus 86 ~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 161 (421)
T 3hdi_A 86 YYAKVLDDHAGQAIDTLSDMFFHS----TFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVE 161 (421)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHSB----CCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHH
T ss_pred EEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 677777888999998888877654 399999999999999999998888888887766666544432 22222467
Q ss_pred HHhcCCHHHHHHHHHHhcc-CCceEEEEcCCC
Q 011279 444 TVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 444 ~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~ 474 (489)
.|+++|.+|+.++.++++. ++.+++++||..
T Consensus 162 ~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~ 193 (421)
T 3hdi_A 162 TLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH 193 (421)
T ss_dssp HHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC
T ss_pred HHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC
Confidence 8899999999999999999 899999999986
No 25
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=98.13 E-value=0.00013 Score=73.48 Aligned_cols=163 Identities=10% Similarity=0.040 Sum_probs=114.1
Q ss_pred CceEEEEEeecCCCCCCC--cchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEE
Q 011279 288 QLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 365 (489)
Q Consensus 288 ~~~~v~l~~~~~~~~~~~--~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~ 365 (489)
+.+.+.+.+.++. ..+ .+.....++..++..| +. ....+..|..+++... . ....
T Consensus 21 ~~~~~~l~~~~Gs--~~e~~~~~g~ahlle~~l~~g-------------t~--~~~~~~~G~~~na~t~--~----~~t~ 77 (431)
T 3cx5_A 21 HTASVGVVFGSGA--ANENPYNNGVSNLWKNIFLSK-------------EN--SAVAAKEGLALSSNIS--R----DFQS 77 (431)
T ss_dssp SSEEEEEEESCCG--GGSCTTTTTHHHHHHHHHTSH-------------HH--HHHHHHTTCEEEEEEC--S----SCEE
T ss_pred CEEEEEEEEecCc--cCCCCCCcchHHHHHHHHhcC-------------CC--cccHHHcCCeeeeeec--C----CeEE
Confidence 6778888887765 333 3456677888887643 22 1234667765544332 1 2357
Q ss_pred EEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHcCCC--CCHHHHH
Q 011279 366 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR-MVVSEDIGRQVLTYGER--KPVEHFL 442 (489)
Q Consensus 366 i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~-~~~~~~i~~~~~~~g~~--~~~~~~~ 442 (489)
+++.+.+++.+++++.+.+.+.+..... ++++++++.|..++..+....+++ ..++.+.....+..+.+ .+.....
T Consensus 78 ~~~~~~~~~l~~~l~ll~~~~~~p~~~~-f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (431)
T 3cx5_A 78 YIVSSLPGSTDKSLDFLNQSFIQQKANL-LSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTL 156 (431)
T ss_dssp EEEEECSTTHHHHHHHHHHHHHTCSTTT-TCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCH
T ss_pred EEEEechhhHHHHHHHHHHHHhCccccc-CCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCH
Confidence 7788888888888888888776642101 899999999999999988766666 66665555555433332 2233456
Q ss_pred HHHhcCCHHHHHHHHHHhcc-CCceEEEEcCCC
Q 011279 443 KTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 443 ~~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~ 474 (489)
+.|+++|.+|++++.++++. .+.+++++||..
T Consensus 157 ~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~ 189 (431)
T 3cx5_A 157 ESLENLVVADLESFANNHFLNSNAVVVGTGNIK 189 (431)
T ss_dssp HHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCC
T ss_pred HHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCC
Confidence 78899999999999999998 889999999985
No 26
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=98.11 E-value=8.8e-05 Score=74.85 Aligned_cols=167 Identities=13% Similarity=0.037 Sum_probs=113.5
Q ss_pred CceEEEEEeecCCCCCCC-cchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEE
Q 011279 288 QLTHFVLAFELPGGWHKD-KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 366 (489)
Q Consensus 288 ~~~~v~l~~~~~~~~~~~-~~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i 366 (489)
+...+.+.|.++. ..+ .......++..++..|. ++ +...=+.+..+..|..+++... ...+.+
T Consensus 34 ~~~~~~~~~~~Gs--~~e~~~~g~a~lle~ll~~gt-------~~-~~~~~l~~~l~~~g~~~~a~t~------~~~~~~ 97 (434)
T 3gwb_A 34 PMFDLRLIFAAGS--SQDGNAPGVALLTNAMLNEGV-------AG-KDVGAIAQGFEGLGADFGNGAY------KDMAVA 97 (434)
T ss_dssp SEEEEEEEESCSG--GGCTTSTTHHHHHHHHGGGEE-------TT-EEHHHHHHHHHTTTCEEEEEEC------SSCEEE
T ss_pred CEEEEEEEEeccc--ccCCcchhHHHHHHHHHhcCc-------cc-CCHHHHHHHHHHhCCEEEeeec------CCeEEE
Confidence 6777888887765 333 33345566777765431 11 1111133444556766655443 124555
Q ss_pred EEEeCccc--HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC--CCHHHHH
Q 011279 367 QGTTGSDF--VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHFL 442 (489)
Q Consensus 367 ~~~~~p~~--~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~--~~~~~~~ 442 (489)
++.+.+++ .+.+++.+.+.+.+. .++++++++.|..++..+....+++...+.+.....+..+.+ .+..-..
T Consensus 98 ~~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~ 173 (434)
T 3gwb_A 98 SLRSLSAVDKREPALKLFAEVVGKP----TFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDA 173 (434)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHSC----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCT
T ss_pred EEEecCccccHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCCH
Confidence 66666666 888888777766553 399999999999999999998888888877666666544332 1222245
Q ss_pred HHHhcCCHHHHHHHHHHhcc-CCceEEEEcCCC
Q 011279 443 KTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 443 ~~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~ 474 (489)
+.|+++|.+|++++.++++. .+.+++++||..
T Consensus 174 ~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~ 206 (434)
T 3gwb_A 174 KSIPPITLAQLKAFHAKAYAAGNVVIALVGDLS 206 (434)
T ss_dssp TTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCC
T ss_pred HHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCC
Confidence 77899999999999999998 889999999984
No 27
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=98.11 E-value=0.00018 Score=71.95 Aligned_cols=165 Identities=11% Similarity=0.088 Sum_probs=114.0
Q ss_pred CceEEEEEeecCCCCCCCc--chHHHHHHHHhhcCCC-CCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceE
Q 011279 288 QLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGG-SFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 364 (489)
Q Consensus 288 ~~~~v~l~~~~~~~~~~~~--~~~~l~vl~~lL~~~~-sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~ 364 (489)
+.+.+.+.+.... .+++ ......++..++..|. .++ ...+.+. .+..|...++.. .. ...
T Consensus 22 ~~~~~~l~~~~Gs--~~e~~~~~G~ah~lehmlf~Gt~~~~--------~~~~~~~-l~~~G~~~na~t--~~----d~t 84 (406)
T 3eoq_A 22 RSVALGYFVKTGA--RDETKEESGVSHFLEHMVFKGPEDMD--------ALAVNRA-FDRMGAQYNAFT--SE----EAT 84 (406)
T ss_dssp SCEEEEEEESCSG--GGSCGGGTTHHHHHHHHHTTCCTTCC--------HHHHHHH-HHHTTCEEEEEE--CS----SCE
T ss_pred CeEEEEEEEcccc--CCCCCCCCCHHHHHHHHHhCCCCCCC--------HHHHHHH-HHHhCCCcccee--cC----CeE
Confidence 6778888887764 4432 2445566777765442 111 0234433 355665544333 22 235
Q ss_pred EEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC--CCHHHHH
Q 011279 365 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHFL 442 (489)
Q Consensus 365 ~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~--~~~~~~~ 442 (489)
.+++.+.+++.+++++.+.+.+ +- .++++++++.|..++..+.+..+++...+.......+..+.+ .+..-..
T Consensus 85 ~y~~~~~~~~l~~~l~ll~d~~-~p----~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~ 159 (406)
T 3eoq_A 85 VYYGAVLPEFAYDLLGLFAKLL-RP----ALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTR 159 (406)
T ss_dssp EEEEEECGGGHHHHHHHHHHHT-SC----CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCH
T ss_pred EEEEEecHHHHHHHHHHHHHHh-cC----CCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 6677888888888887777665 42 499999999999999999998888888887776666544432 2222345
Q ss_pred HHHhcCCHHHHHHHHHHhcc-CCceEEEEcCCC
Q 011279 443 KTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 443 ~~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~ 474 (489)
+.|+++|.+|+.++.++++. ++.+++++||..
T Consensus 160 ~~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~ 192 (406)
T 3eoq_A 160 ESITALTREGMAAYHRRRYLPKNMVLAATGRVD 192 (406)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCC
T ss_pred HHHhhCCHHHHHHHHHHhCCccCEEEEEEcCCC
Confidence 78899999999999999999 899999999983
No 28
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=98.02 E-value=0.00026 Score=71.41 Aligned_cols=171 Identities=8% Similarity=0.011 Sum_probs=115.5
Q ss_pred eEEecCCCCCceEEEEEeecCCCCCCC--cchHHHHHHHHhhcCCCCCCCCCCCCCcc-cHHHHHHHHhCCCEEEEEEee
Q 011279 279 YRCQADSGDQLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGGSFSAGGPGKGMY-SRLYRRVLNEFPQVQSFSAFS 355 (489)
Q Consensus 279 ~~~~~~~~~~~~~v~l~~~~~~~~~~~--~~~~~l~vl~~lL~~~~sf~~gg~gkgm~-srL~~~lR~~~g~~y~~~a~~ 355 (489)
+.+..+ ..+.+.+.+.+.++. ... .......++..++..|. ++ +. ..+. +..+..|..+++..
T Consensus 35 v~~~~~-~~~~~~~~~~~~~Gs--~~e~~~~~g~a~lle~~~~~gt-------~~-~~~~~~~-~~l~~~G~~~na~t-- 100 (439)
T 1pp9_B 35 IASLEN-YAPASRIGLFIKAGS--RYENSNNLGTSHLLRLASSLTT-------KG-ASSFKIT-RGIEAVGGKLSVTS-- 100 (439)
T ss_dssp EEEECC-CCSEEEEEEEESCSG--GGCCTTSTTHHHHHHHTTTSCB-------SS-SCHHHHH-HHHHHTTCEEEEEE--
T ss_pred EEEEeC-CCceEEEEEEEeccc--cCCCCCcCcHHHHHHHhhcCCC-------Cc-CCHHHHH-HHHHHhCCeEEEEe--
Confidence 333344 447777888887765 333 24556677888775431 11 11 1333 33455676554433
Q ss_pred cccCCcceEEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC
Q 011279 356 NIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 435 (489)
Q Consensus 356 ~~~~~~g~~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~ 435 (489)
. .....+++.+.+++.+.+++.+.+.+.+. .++++++++.|..++..+....+++...+.+.....+ ++.+
T Consensus 101 ~----~~~t~~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~-~~~~ 171 (439)
T 1pp9_B 101 T----RENMAYTVECLRDDVDILMEFLLNVTTAP----EFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAA-YRNA 171 (439)
T ss_dssp C----SSCEEEEEEEEGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH-BSSG
T ss_pred c----ceEEEEEEEeehhhHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH-hcCC
Confidence 2 23466777788888988888888777554 3999999999999999998877787777665555554 3321
Q ss_pred --CCHHHHHHHHhcCCHHHHHHHHHHhcc-CCceEEEEcC
Q 011279 436 --KPVEHFLKTVEGVTAKDIASVAQKLLS-SPLTMASYGD 472 (489)
Q Consensus 436 --~~~~~~~~~i~~vT~edI~~~a~~~l~-~~~~~~v~G~ 472 (489)
.+.....+.|+++|.+|++++.++++. ++.+++++|+
T Consensus 172 ~~~~~~g~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~ 211 (439)
T 1pp9_B 172 LANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGV 211 (439)
T ss_dssp GGSCSSCCGGGTTTCCHHHHHHHHHHHCSGGGEEEEEESS
T ss_pred CCCCccCCHHHHhhcCHHHHHHHHHHhCCCCceEEEEeCC
Confidence 122234567899999999999999998 8899999998
No 29
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=97.97 E-value=0.00028 Score=69.02 Aligned_cols=169 Identities=12% Similarity=0.072 Sum_probs=113.6
Q ss_pred CceEEEEEeecCCCCCCCcchHHHHHHHHhhcCC-CCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEEE
Q 011279 288 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGG-GSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 366 (489)
Q Consensus 288 ~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~-~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~i 366 (489)
+...+.+.+.+.. ....+.....++..++..| +.++ ...+.+.+ +..|..+++... .....+
T Consensus 11 ~~v~~~~~~~~Gs--~~e~~~G~ah~leh~lf~Gt~~~~--------~~~l~~~l-~~~G~~~na~t~------~~~t~~ 73 (352)
T 3cx5_B 11 KISTLAVKVHGGS--RYATKDGVAHLLNRFNFQNTNTRS--------ALKLVRES-ELLGGTFKSTLD------REYITL 73 (352)
T ss_dssp SEEEEEEEESCSG--GGCSSTTHHHHHHHHTTSCBSSSC--------HHHHHHHH-HHHTCEEEEEEC------SSCEEE
T ss_pred ceEEEEEEEeeec--cCCCcccHHHHHHHHhccCcCCCC--------HHHHHHHH-HHhCCeEEEEEc------cceEEE
Confidence 5555666665543 4444555667777777543 1111 12344333 455655444332 225667
Q ss_pred EEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 011279 367 QGTTGSDFVSKAIDLAARELISVATPGEVDQVQLD-RAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER-KPVEHFLKT 444 (489)
Q Consensus 367 ~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~-~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~-~~~~~~~~~ 444 (489)
++.+.+++.+.+++.+.+.+.+. .+++++++ +.|..++..+.+..+++...+.+.....+..+.. .+. ..+.
T Consensus 74 ~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~--~~~~ 147 (352)
T 3cx5_B 74 KATFLKDDLPYYVNALADVLYKT----AFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPL--LYDG 147 (352)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHB----CCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCS--SCCS
T ss_pred EEEechhhHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCcc--chhh
Confidence 77888888999999888887665 39999998 9999999999887888887776655555532211 121 2578
Q ss_pred HhcCCHHHHHHHHHHhcc-CCceEEEEcCCCCCCCHHHHHH
Q 011279 445 VEGVTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSS 484 (489)
Q Consensus 445 i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~~lp~~~~~~~ 484 (489)
|+++|.+|+.++.++++. ++.+++++| . +.+++..
T Consensus 148 l~~it~~~l~~f~~~~y~~~n~~l~v~G-~----~~~~~~~ 183 (352)
T 3cx5_B 148 VERVSLQDIKDFADKVYTKENLEVSGEN-V----VEADLKR 183 (352)
T ss_dssp SSCCCHHHHHHHHHHHCCGGGEEEEEES-S----CHHHHHH
T ss_pred hccCCHHHHHHHHHHhCCcCcEEEEEeC-C----CHHHHHH
Confidence 999999999999999999 888999999 5 4454443
No 30
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=97.97 E-value=0.00021 Score=71.71 Aligned_cols=174 Identities=16% Similarity=0.173 Sum_probs=114.7
Q ss_pred CceEEEEEeecCCCCCCCcchHHHHHHHHhhcCCCCCCCCCCCCCccc-HHHHHHHHhC-CCEEEEEEeecccCCcceEE
Q 011279 288 QLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYS-RLYRRVLNEF-PQVQSFSAFSNIYNHSGMFG 365 (489)
Q Consensus 288 ~~~~v~l~~~~~~~~~~~~~~~~l~vl~~lL~~~~sf~~gg~gkgm~s-rL~~~lR~~~-g~~y~~~a~~~~~~~~g~~~ 365 (489)
+...+.+.|..+. .. +......++..++..|.. .+-+ .-+.+..+.. |..+++...... ....+.
T Consensus 23 ~~~~~~~~~~~g~--~~-e~~g~a~ll~~~l~~gt~--------~~~~~~~~~~~l~~~~G~~~~a~t~~~~--t~~~~~ 89 (425)
T 3d3y_A 23 KTVRLLVRFNTRL--NH-ETITKRTLLSSLMETNSL--------NYPNQVKLSERLAELYGASFGIGVSKKG--NQHWFN 89 (425)
T ss_dssp SEEEEEEEEEEEC--CT-TTHHHHHHHHHHHHHCCS--------SSCSHHHHHHHHHHTTSCEEEEEEEEET--TEEEEE
T ss_pred ceEEEEEEEeCCC--Cc-cchhHHHHHHHHHHhhhh--------cCCCHHHHHHHHHHHhCceEeeeeeecC--ceEEEE
Confidence 6788888888875 33 334556677777753311 1102 1233344444 776766554321 122355
Q ss_pred EEEEeCcc-------cHHHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-cCCC-
Q 011279 366 IQGTTGSD-------FVSKAIDLAARELISVA-TPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLT-YGER- 435 (489)
Q Consensus 366 i~~~~~p~-------~~~~~i~~~~~el~~l~-~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~-~g~~- 435 (489)
+++.+.++ +.+++++.+.+.+.+.. ..+.++++++++.|..++..+....+++...+.+.....+. .+.+
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~ 169 (425)
T 3d3y_A 90 ISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQ 169 (425)
T ss_dssp EEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTTT
T ss_pred EEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCCc
Confidence 66666554 58888888887776542 11118999999999999999988777887777666666554 2332
Q ss_pred -CCHHHHHHHHhcCCHHHHHHHHHHhcc-CCceEEEEcCCC
Q 011279 436 -KPVEHFLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 436 -~~~~~~~~~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~ 474 (489)
.+.....+.|+++|.+|+.++.++++. .+.+++++||..
T Consensus 170 ~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~ 210 (425)
T 3d3y_A 170 KIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVN 210 (425)
T ss_dssp TSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCC
T ss_pred cCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 222335677889999999999999998 899999999984
No 31
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=97.93 E-value=0.00061 Score=69.03 Aligned_cols=166 Identities=12% Similarity=0.111 Sum_probs=107.7
Q ss_pred CceEEEEEeecCCCCCCCc--chHHHHHHHHhhcCC-CCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceE
Q 011279 288 QLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGG-GSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 364 (489)
Q Consensus 288 ~~~~v~l~~~~~~~~~~~~--~~~~l~vl~~lL~~~-~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~ 364 (489)
+...+.+.+.+.. ..++ ......++..++..| +.|+ . ..|. +..+..|.. ++++... ...
T Consensus 27 ~~v~~~~~~~~Gs--~~e~~~~~Glah~lehmlf~Gt~~~~----~----~~l~-~~l~~~g~~--~na~t~~----d~t 89 (445)
T 3ami_A 27 PTLVHMVWYRVGS--MDETTGTTGVAHALEHMMFKGTKDVG----P----GEFS-KRVAAMGGR--DNAFTTR----DYT 89 (445)
T ss_dssp SEEEEEEEESCCG--GGCCTTCTTHHHHHHHHTTSCBSSSC----T----THHH-HHHHHTTCE--EEEEECS----SCE
T ss_pred CeEEEEEEEeecc--CCCCCCCccHHHHHHHhhcCCCCCCC----H----HHHH-HHHHHhCCc--cccccCC----CeE
Confidence 6666777776654 3332 334455666666433 2222 1 2333 444556654 4444332 234
Q ss_pred EEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHcCCC--CCHHHH
Q 011279 365 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM-NLESRMVVSEDIGRQVLTYGER--KPVEHF 441 (489)
Q Consensus 365 ~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~-~~es~~~~~~~i~~~~~~~g~~--~~~~~~ 441 (489)
.+++.+.+++.+.+++.+.+.+.+. .++++++++.|..++..+.+ ..+++..++.+.....+..+.+ .+..-.
T Consensus 90 ~y~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~ 165 (445)
T 3ami_A 90 AYYQQVPSSRLSDVMGLEADRMANL----VVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGW 165 (445)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCC
T ss_pred EEEEECCHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCC
Confidence 4556677788888888887776553 39999999999999999985 4456766665555555533332 112224
Q ss_pred HHHHhcCCHHHHHHHHHHhcc-CCceEEEEcCCC
Q 011279 442 LKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 442 ~~~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~ 474 (489)
.+.|+++|.+|+.++.++++. ++.+++++||..
T Consensus 166 ~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d 199 (445)
T 3ami_A 166 MNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVE 199 (445)
T ss_dssp HHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCC
T ss_pred HHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCC
Confidence 678899999999999999999 899999999974
No 32
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=97.93 E-value=0.00064 Score=68.72 Aligned_cols=167 Identities=12% Similarity=0.075 Sum_probs=111.7
Q ss_pred CceEEEEEeecCCCCCCCc--chHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceEE
Q 011279 288 QLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 365 (489)
Q Consensus 288 ~~~~v~l~~~~~~~~~~~~--~~~~l~vl~~lL~~~~sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~~ 365 (489)
+...+.+.+.+.. ..++ ......++..++..|. ++--...|. +..+..|.. ++++... ....
T Consensus 27 ~~~~~~~~~~~Gs--~~e~~~~~G~ah~le~~~~~Gt-------~~~~~~~l~-~~l~~~g~~--~na~t~~----~~t~ 90 (443)
T 1hr6_B 27 SSATVGIFVDAGS--RAENVKNNGTAHFLEHLAFKGT-------QNRPQQGIE-LEIENIGSH--LNAYTSR----ENTV 90 (443)
T ss_dssp SEEEEEEEEECSG--GGCCTTTTTHHHHHHHHTTSBB-------SSCBHHHHH-HHHHHTTCE--EEEEECS----SEEE
T ss_pred CEEEEEEEEcccc--CCCCCCCCcHHHHHHHHhhcCC-------CCCCHHHHH-HHHHHcCCe--EEEEECC----CeEE
Confidence 3667777777764 3332 3445566777665321 110012333 334455653 4444332 2356
Q ss_pred EEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC--CCHHHHHH
Q 011279 366 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHFLK 443 (489)
Q Consensus 366 i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~--~~~~~~~~ 443 (489)
+++.+.+++.+++++.+.+.+.+. .++++++++.|..++..+....+++...+.+.....+..+.+ .+..-..+
T Consensus 91 ~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 166 (443)
T 1hr6_B 91 YYAKSLQEDIPKAVDILSDILTKS----VLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIK 166 (443)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHSB----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHH
T ss_pred EEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 777788888888888888777554 399999999999999999888788877766655555433332 11122467
Q ss_pred HHhcCCHHHHHHHHHHhcc-CCceEEEEcCCC
Q 011279 444 TVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 444 ~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~ 474 (489)
.|+++|.+|+.++.++++. ++.+++++||..
T Consensus 167 ~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~ 198 (443)
T 1hr6_B 167 NIKSITRTDLKDYITKNYKGDRMVLAGAGAVD 198 (443)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCC
T ss_pred HHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCC
Confidence 7889999999999999998 899999999985
No 33
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.91 E-value=0.0006 Score=69.10 Aligned_cols=166 Identities=14% Similarity=0.115 Sum_probs=112.8
Q ss_pred CceEEEEEeecCCCCCCCc--chHHHHHHHHhhcCCC-CCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcceE
Q 011279 288 QLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGG-SFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 364 (489)
Q Consensus 288 ~~~~v~l~~~~~~~~~~~~--~~~~l~vl~~lL~~~~-sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~~ 364 (489)
+.+.+.+.|.... ..++ ......++..++..|. .+ |. ..+.+. .+..|.. ++++... + ..
T Consensus 33 ~~~~~~l~~~~Gs--~~e~~~~~Glahllehmlf~GT~~~----~~----~~~~~~-l~~~G~~--~na~t~~--d--~t 95 (446)
T 1pp9_A 33 PTCTVGVWIDAGS--RYESEKNNGAGYFVEHLAFKGTKNR----PG----NALEKE-VESMGAH--LNAYSTR--E--HT 95 (446)
T ss_dssp SEEEEEEEESCSG--GGCCTTTTTHHHHHHHHTTSCBSSS----TT----THHHHH-HHHTTCE--EEEEECS--S--CE
T ss_pred CEEEEEEEEcccc--CCCCCCCCcHHHHHHHHhcCCCCCC----CH----HHHHHH-HHHcCCE--EEEEEcC--C--eE
Confidence 6667777777654 4332 3445567777765431 11 11 233333 3445654 4444322 1 25
Q ss_pred EEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC--CCHHHHH
Q 011279 365 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHFL 442 (489)
Q Consensus 365 ~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~--~~~~~~~ 442 (489)
.+++.+..++.+++++.+.+.+.+. .++++++++.|..++..+....+++..++.......+..+.+ .+..-..
T Consensus 96 ~~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 171 (446)
T 1pp9_A 96 AYYIKALSKDLPKAVELLADIVQNC----SLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPS 171 (446)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHB----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCH
T ss_pred EEEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 6677777888999999988888775 399999999999999999888788877766555555433322 1222346
Q ss_pred HHHhcCCHHHHHHHHHHhcc-CCceEEEEcCCC
Q 011279 443 KTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 443 ~~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~ 474 (489)
+.|+++|.+|++++.++++. ++.+++++||..
T Consensus 172 ~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~ 204 (446)
T 1pp9_A 172 ENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLE 204 (446)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCC
T ss_pred HHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCC
Confidence 77889999999999999998 899999999985
No 34
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.89 E-value=0.0004 Score=71.12 Aligned_cols=166 Identities=12% Similarity=0.046 Sum_probs=113.8
Q ss_pred CCceEEEEEeecCCCCCCC--cchHHHHHHHHhhcCCC-CCCCCCCCCCcccHHHHHHHHhCCCEEEEEEeecccCCcce
Q 011279 287 DQLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGG-SFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGM 363 (489)
Q Consensus 287 ~~~~~v~l~~~~~~~~~~~--~~~~~l~vl~~lL~~~~-sf~~gg~gkgm~srL~~~lR~~~g~~y~~~a~~~~~~~~g~ 363 (489)
.+.+.+.+.+.... ..+ .......++..++..|. .++ ...+. +..+..|..+++.. . ...
T Consensus 24 ~~~~~~~l~~~~Gs--~~e~~~~~Glah~lehm~f~Gt~~~~--------~~~~~-~~le~~G~~~na~t--~----~d~ 86 (475)
T 1hr6_A 24 GHFSALGLYIDAGS--RFEGRNLKGCTHILDRLAFKSTEHVE--------GRAMA-ETLELLGGNYQCTS--S----REN 86 (475)
T ss_dssp CSSEEEEEEESCCG--GGCTTTTTTHHHHHHHTTTSCBTTBC--------HHHHH-HHHHHTTSCEEEEE--C----SSC
T ss_pred CCEEEEEEEEcccc--CCCCCCCCcHHHHHHHHHhCCCCCCC--------HHHHH-HHHHHcCCEEEEEE--c----cCe
Confidence 36777888887764 333 33455667777776431 111 01333 33455676544433 2 123
Q ss_pred EEEEEEeCcccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC--CCHHHH
Q 011279 364 FGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER--KPVEHF 441 (489)
Q Consensus 364 ~~i~~~~~p~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~--~~~~~~ 441 (489)
..+++.+.+++.+.+++.+.+.+.+. .++++++++.|..++..+.+..+++...+.+.....+..+.+ .+..-.
T Consensus 87 t~y~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~ 162 (475)
T 1hr6_A 87 LMYQASVFNQDVGKMLQLMSETVRFP----KITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICP 162 (475)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCC
T ss_pred EEEEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence 66777888888888888888877654 399999999999999999887788887777666666543322 222224
Q ss_pred HHHHhcCCHHHHHHHHHHhcc-CCceEEEEcCCC
Q 011279 442 LKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 442 ~~~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~ 474 (489)
.+.|+++|.+||+++.++++. ++.+++++| ..
T Consensus 163 ~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~d 195 (475)
T 1hr6_A 163 RGLIPSISKYYLLDYRNKFYTPENTVAAFVG-VP 195 (475)
T ss_dssp GGGGGGCCHHHHHHHHHHHCCGGGEEEEEES-SC
T ss_pred HHHHhhcCHHHHHHHHHHhCCcccEEEEEeC-CC
Confidence 577899999999999999998 889999999 63
No 35
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=96.24 E-value=0.027 Score=49.76 Aligned_cols=141 Identities=4% Similarity=-0.055 Sum_probs=78.7
Q ss_pred CCCeEEEEEEEccccCCCCCCCCcHHHHHHHhhcccCCCCChHHHHHHHHHcCCeeeEee--c----cceEEEEEEccCC
Q 011279 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA--S----REQMGYSFDALKT 169 (489)
Q Consensus 96 ~~~~~~i~l~i~~Gs~~e~~~~~G~a~lle~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~--~----~~~~~~~~~~~~~ 169 (489)
+.+...+.+.+.+.....+ ..-...++..++..|.. ..|.+.|...|...++++ . .....+.+.+.++
T Consensus 21 ~~~~~~v~~~~~~~~~~~~--d~~al~vl~~iLggg~s----SrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~ 94 (197)
T 3ih6_A 21 AGGTPLVAAMYHLPAAGSP--DFVGLDLAATILADTPS----SRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPG 94 (197)
T ss_dssp -CCSCEEEEEEECCCTTST--THHHHHHHHHHHHSSTT----SHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTT
T ss_pred CCCCceEEEEEecCCCCCC--cHHHHHHHHHHHcCCCC----chHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCC
Confidence 3344555555555554432 44456677777654432 345544544454333322 1 2345666666666
Q ss_pred -CHHHHHHHHHHHHHhh------------------------cCChhHHHHHHHHHHhcCCCCCCCCCCChhhhccCCHHH
Q 011279 170 -YVPEMLTKVKSEISEV------------------------SNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTL 224 (489)
Q Consensus 170 -~l~~~l~~v~~el~~~------------------------~~~p~~~~~~~l~~~~~~~~~~~~~~g~~~~l~~i~~~~ 224 (489)
+.+.+++.+..+++.. ..++...+........++.+. ......+.|+++|.++
T Consensus 95 ~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~~~--~~~~~~~~i~~vT~~d 172 (197)
T 3ih6_A 95 MDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDWR--LFFLQRDRVREAKLDD 172 (197)
T ss_dssp SCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTCTT--HHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCHHH
Confidence 5887774444444332 234443333333322222110 1112347789999999
Q ss_pred HHHHHHhhCCCCCeEEEEec
Q 011279 225 LEEFVAENYTGPRMVLAASG 244 (489)
Q Consensus 225 l~~f~~~~y~~~~~~l~ivG 244 (489)
+.++.+++|.+++++++++|
T Consensus 173 v~~~a~~~l~~~~~~~~~~~ 192 (197)
T 3ih6_A 173 VQRAAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp HHHHHHHHSSGGGCEEEEEC
T ss_pred HHHHHHHhCCccCeEEEEEe
Confidence 99999999999999999888
No 36
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=94.87 E-value=0.0028 Score=65.17 Aligned_cols=161 Identities=11% Similarity=0.061 Sum_probs=87.3
Q ss_pred CceEEEEEeecCCCCCCCc--chHHHHHHHHhhcCCC-CCCCCCCCCCcccHHHHHHHHh----CCCEEEEEEeecccCC
Q 011279 288 QLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGG-SFSAGGPGKGMYSRLYRRVLNE----FPQVQSFSAFSNIYNH 360 (489)
Q Consensus 288 ~~~~v~l~~~~~~~~~~~~--~~~~l~vl~~lL~~~~-sf~~gg~gkgm~srL~~~lR~~----~g~~y~~~a~~~~~~~ 360 (489)
+...+.+.|.... ..++ ......++..+|..|. .++ ..=+.+..++ .|...+ ++.+ .+
T Consensus 48 ~~v~~~l~~~~Gs--~~e~~~~~Glahllehmlf~GT~~~~---------~~~~~~~~~~~~~~~G~~~n--a~t~--~d 112 (492)
T 3go9_A 48 DRIELRLIVNTGS--LSENTQEVGFAHLLPRLALMSSASFT---------PAQLQSLWQQGIDNERPLPP--AITS--YD 112 (492)
T ss_dssp SCEEEEEEESCCG--GGCCGGGTTHHHHHHHHHHHCCTTCC---------HHHHHHHHHTCSCSSSCCCS--EEEC--SS
T ss_pred CeEEEEEEEeccc--CCCCCCCcCHHHHHHHHHhcCCCCCC---------HHHHHHHHHHHHHhcCCCcc--eEeC--CC
Confidence 5677778887654 4443 2345566777665432 111 1112222222 232222 2222 12
Q ss_pred cceEEEEEEeCc---ccHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC--
Q 011279 361 SGMFGIQGTTGS---DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER-- 435 (489)
Q Consensus 361 ~g~~~i~~~~~p---~~~~~~i~~~~~el~~l~~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~~-- 435 (489)
...+++.+.. ++.+++++.+.+.+.+. .++++++++.|...+..+....+++... .++..+.....
T Consensus 113 --~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~er~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 183 (492)
T 3go9_A 113 --FTLYSLSLPNNRPDLLKDALAWLSDTAGNL----AVSEQTVNAALNTATDPIATFPQNIQEP---WWRYRLKGSSLIG 183 (492)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHHHHHHHHCC----CCSHHHHHHHHTCSSCCEEESSSCTTCH---HHHHHTTTSTTTT
T ss_pred --eEEEEEECCCCcHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHhcccchhhH---HHHHHhccCCccc
Confidence 2444455544 55677777776655443 4999999998875443332222222211 11111111111
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHhcc-CCceEEEEcCCC
Q 011279 436 KPVEHFLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 474 (489)
Q Consensus 436 ~~~~~~~~~i~~vT~edI~~~a~~~l~-~~~~~~v~G~~~ 474 (489)
.++. .+.|+++|.+|++++.++++. ++.+++++||..
T Consensus 184 ~~~~--~~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd 221 (492)
T 3go9_A 184 HDPG--QPVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVD 221 (492)
T ss_dssp CCTT--CCCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCC
T ss_pred CCCc--hhhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCC
Confidence 1111 145899999999999999999 899999999973
No 37
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=41.35 E-value=45 Score=20.34 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 011279 380 DLAARELISVATPGEVDQVQLDRAKQS 406 (489)
Q Consensus 380 ~~~~~el~~l~~~g~it~~eL~~aK~~ 406 (489)
..+..++..++++| ++++||......
T Consensus 3 aalkselqalkkeg-fspeelaalese 28 (48)
T 1g6u_A 3 AALKSELQALKKEG-FSPEELAALESE 28 (48)
T ss_dssp HHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 45667888888888 999998755443
No 38
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=28.34 E-value=1.8e+02 Score=21.65 Aligned_cols=77 Identities=4% Similarity=0.007 Sum_probs=43.1
Q ss_pred cccHHHHHHHHHHHHHHhh-CC---CCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC-CCCHHHHHHHHh
Q 011279 372 SDFVSKAIDLAARELISVA-TP---GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE-RKPVEHFLKTVE 446 (489)
Q Consensus 372 p~~~~~~i~~~~~el~~l~-~~---g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~-~~~~~~~~~~i~ 446 (489)
|...++.+..+.+.+.... ++ |.|+.+||..+-............+. .....+.+.+=..++ ..+.++++..+.
T Consensus 3 ~t~le~~i~~l~~~F~~fd~~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~-~ev~~~i~~~D~d~DG~Idf~EF~~~~~ 81 (98)
T 3n22_A 3 SSSLEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDE-EGLKKLMGSLDENSDQQVDFQEYAVFLA 81 (98)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHCHHHHCSSCCH-HHHHHHHHHHCTTSSSSBCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhhhhccCCCCH-HHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 3346777778888877764 22 36999999987665322222111233 333344443312232 367788888776
Q ss_pred cCC
Q 011279 447 GVT 449 (489)
Q Consensus 447 ~vT 449 (489)
.++
T Consensus 82 ~~~ 84 (98)
T 3n22_A 82 LIT 84 (98)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 39
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=25.10 E-value=62 Score=23.36 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=38.8
Q ss_pred hcCCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEec
Q 011279 201 GYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 244 (489)
Q Consensus 201 ~~~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG 244 (489)
.|++++-+.+++..+.|+..+.++...=..+.|.+..+++.+.|
T Consensus 31 ~Y~~~sDyTLy~~Vs~I~tt~~~~A~~eLs~~Y~aqgv~vsv~~ 74 (85)
T 3ov5_A 31 SYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSA 74 (85)
T ss_dssp EECSSSCCBCCGGGGGCEESCHHHHHHHHHHHHGGGTEEEEEET
T ss_pred EecCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEEC
Confidence 45778888888889999999999998888899999999999988
No 40
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=25.04 E-value=72 Score=24.44 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=39.2
Q ss_pred hcCCCCCCCCCCChhhhccCCHHHHHHHHHhhCCCCCeEEEEec
Q 011279 201 GYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 244 (489)
Q Consensus 201 ~~~~~~~~~~~g~~~~l~~i~~~~l~~f~~~~y~~~~~~l~ivG 244 (489)
.|++++-+.+++..+.|+..+.++...=..+.|.+..+++.+.|
T Consensus 61 ~Y~~~~DyTLy~~vs~I~tt~~~qA~~ELs~iY~akgv~vsv~~ 104 (120)
T 2l4w_A 61 SYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSA 104 (120)
T ss_dssp EECCSSCCBCCSTTTTCCBSCHHHHHHHHHHHHGGGTEEEEECS
T ss_pred eecCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEEC
Confidence 45788888888999999999999998888899999999999988
No 41
>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}
Probab=24.19 E-value=61 Score=25.62 Aligned_cols=86 Identities=13% Similarity=0.185 Sum_probs=51.3
Q ss_pred CcccHHHHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC-CCCHHHHHHHHhcC
Q 011279 371 GSDFVSKAIDLAARELISVA-TPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE-RKPVEHFLKTVEGV 448 (489)
Q Consensus 371 ~p~~~~~~i~~~~~el~~l~-~~g~it~~eL~~aK~~l~~~~~~~~es~~~~~~~i~~~~~~~g~-~~~~~~~~~~i~~v 448 (489)
-|...++.++.+.+.+.... .+|.|+.+||..+-+...........+...+-. +...+=..++ ..+.++++..+..+
T Consensus 6 M~s~lE~~ie~l~~~F~~yd~ddG~Is~~EL~~~l~~~~~~~l~~~~~~~~v~~-~i~~~D~d~DG~IdF~EF~~lm~~l 84 (121)
T 4drw_A 6 MPSQMEHAMETMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDK-IMKDLDQCRDGKVGFQSFFSLIAGL 84 (121)
T ss_dssp -CCSHHHHHHHHHHTTGGGSCTTCSCCHHHHHHHTTTSCHHHHTTSSCTTHHHH-HHHHHCTTCSSCCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCCCEEcHHHHHHHHHHHhhhhcccCCCHHHHHH-HHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 35567778888888777643 347799999998765433333333334444433 3333212333 37889999998877
Q ss_pred CHHHHHHHHHHhcc
Q 011279 449 TAKDIASVAQKLLS 462 (489)
Q Consensus 449 T~edI~~~a~~~l~ 462 (489)
+. .++.++.
T Consensus 85 ~~-----~~he~f~ 93 (121)
T 4drw_A 85 TI-----ACNDYFV 93 (121)
T ss_dssp HH-----HHHHHHT
T ss_pred HH-----HHHHHHH
Confidence 64 3455544
No 42
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=22.81 E-value=70 Score=24.68 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=19.3
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHH
Q 011279 384 RELISVATPGEVDQVQLDRAKQSTK 408 (489)
Q Consensus 384 ~el~~l~~~g~it~~eL~~aK~~l~ 408 (489)
..|++++..++||++||+..|..|.
T Consensus 10 q~LW~lA~~~NFT~~ELeSlK~EL~ 34 (109)
T 2fcw_A 10 IDLWDLAQSANLTDKELEAFREELK 34 (109)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3556666656799999999988875
No 43
>1t0c_A Insulin; type I beta-turn, BEND, type III' beta-turn, hormone/growth factor complex; NMR {Homo sapiens}
Probab=21.80 E-value=29 Score=19.21 Aligned_cols=12 Identities=50% Similarity=0.999 Sum_probs=8.2
Q ss_pred CCCCCCCcccHH
Q 011279 326 AGGPGKGMYSRL 337 (489)
Q Consensus 326 ~gg~gkgm~srL 337 (489)
.||||.|-...|
T Consensus 13 gggpgagslqpl 24 (31)
T 1t0c_A 13 GGGPGAGSLQPL 24 (31)
T ss_dssp CCSTTSSSCSGG
T ss_pred cCCCCcccccce
Confidence 378999865444
No 44
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=20.98 E-value=1.1e+02 Score=17.58 Aligned_cols=23 Identities=22% Similarity=0.589 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh
Q 011279 438 VEHFLKTVEGVTAKDIASVAQKL 460 (489)
Q Consensus 438 ~~~~~~~i~~vT~edI~~~a~~~ 460 (489)
.+++++.|.++|.-+++++++.+
T Consensus 3 ~~~iie~i~~lTvlEl~eLvk~l 25 (30)
T 1zav_U 3 IDEIIEAIEKLTVSELAELVKKL 25 (30)
T ss_dssp HHHHHHHHHHSBHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHH
Confidence 46788999999999999988764
Done!