BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011281
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 1/236 (0%)
Query: 237 WPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP 296
WPS G++ + L +Y +L ++ + G + G++GRTGSGKSTL+ R++
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN- 72
Query: 297 TXXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKC 356
T R +IPQ +F G+ NLDP ++D+EIW+ D+
Sbjct: 73 TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEV 132
Query: 357 QLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDN 416
L + + + GKL+ + + G S G +QL+CLAR DE +A +D T
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 417 LIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSF 472
+I+ TL Q F+DCTVI RI ++++ D L++ + ++DS L + F
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 112/490 (22%), Positives = 210/490 (42%), Gaps = 37/490 (7%)
Query: 7 RAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFI 66
R P+ FFD TP G +++R +D ++ + +++ ++ + G + ++ + + +
Sbjct: 122 RVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSL 181
Query: 67 AFIPVIAISIWYQQ--------YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSF- 117
+ ++ +++ Q Y+ + R L +L G+ E ISG T+I+ F
Sbjct: 182 VTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGI--------IEEDISGLTVIKLFT 233
Query: 118 ---DQVSRFQDTNMKLVDGYSRPKFH--IAAAMQWLCFHIDMXXXXXXXXXXXXXXXXPE 172
++ +F N L ++ + + + + ++
Sbjct: 234 REEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITV 293
Query: 173 GVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEP--PLVIEA 230
G + I G + F LN L ++ ++ + S ERI + + + E P +E
Sbjct: 294 GTIATFI-GYSRQFTRPLNELS----NQFNMIQMALASAERIFEILDLEEEKDDPDAVEL 348
Query: 231 SRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTL 290
+GE++ + Y P VL+ +T G K +VG TGSGK+T++ L
Sbjct: 349 RE------VRGEIEFKNVWFSYDKKKP-VLKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
Query: 291 FRIVEPTXXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA-DEEI 349
R + LRS + I+ QD +F +V NL A DEEI
Sbjct: 402 MRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEI 461
Query: 350 WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATAS 409
EA + ++ E+ +T+NGE+ S GQRQL+ + R DEAT++
Sbjct: 462 KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSN 521
Query: 410 VDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKS 469
VDT T+ IQ + + T I IAHR+ ++ ++D++++L G I E L++ +
Sbjct: 522 VDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRG 581
Query: 470 SSFAQLVAEY 479
+ ++Y
Sbjct: 582 FYYELFTSQY 591
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 123/259 (47%), Gaps = 4/259 (1%)
Query: 210 SVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLG 269
S +R+L+ + NE P + EA +G V ++ RY + VL G+ +
Sbjct: 312 SAKRVLEVL---NEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKP 368
Query: 270 GMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTM 329
G ++G TGSGKSTL+ + R+++P DLR +S +PQ+ +
Sbjct: 369 GSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVL 428
Query: 330 FEGSVHNNLD-PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388
F G++ NL E+ D+EI EA Q+ + + +SRV G N+S GQ+Q +
Sbjct: 429 FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL 488
Query: 389 CLARXXXXXXXXXXXDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVL 448
+AR D+ T+SVD T+ I L ++ CT I +I + + +D +L
Sbjct: 489 SIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKIL 548
Query: 449 LLSYGLIEEFDSPTRLLEN 467
+L G + F + LLE+
Sbjct: 549 VLHEGKVAGFGTHKELLEH 567
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 119/496 (23%), Positives = 202/496 (40%), Gaps = 49/496 (9%)
Query: 2 HFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAG 61
HF P+ FFD +G +L+R + D V + + + + I+G++ ++
Sbjct: 107 HF--MHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNS 164
Query: 62 WQ---VFIAFIPVIAISIWYQQYYLPSARELSRLVGVSKAPVIQHFAETISGSTII---- 114
WQ V I PV+A +I + R++SR + + V + + G ++
Sbjct: 165 WQLSLVLIVVAPVVAFAI---SFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYG 221
Query: 115 ------RSFDQVSR-FQDTNMKLVDGYS--RPKFHIAAAMQWLCF----HIDMXXXXXXX 161
+ FD+VS + MKLV S P + A++ +D
Sbjct: 222 GQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTP 281
Query: 162 XXXXXXXXXPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIP 221
G++ P A +VT M + L +LE ER
Sbjct: 282 GTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET-----ER-------D 329
Query: 222 NEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGS 281
N EA R N GEVD+ + Y L ++ + G +VGR+GS
Sbjct: 330 NGK---YEAERVN------GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGS 380
Query: 282 GKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPL 341
GKST+ R + +LR +++ Q+ +F ++ NN+
Sbjct: 381 GKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYA 440
Query: 342 EE--YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXX 399
E Y E+I +A + + L++ + ENG + S GQRQ V +AR
Sbjct: 441 AEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAP 500
Query: 400 XXXXDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 459
DEAT+++DT ++ IQ L + + TV+ IAHR++++ +D +L++ G I E
Sbjct: 501 VLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERG 560
Query: 460 SPTRLLENKSSSFAQL 475
LL + ++AQL
Sbjct: 561 RHADLLA-QDGAYAQL 575
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 122/497 (24%), Positives = 219/497 (44%), Gaps = 63/497 (12%)
Query: 9 PMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQ----ILGVIAVISQAGWQ- 63
P+SFFD +G +L+R + D V AS+ G +V++ I+G+ ++ WQ
Sbjct: 112 PVSFFDKQSTGTLLSRITYDSEQV----ASSSSGALITVVREGASIIGLFIMMFYYSWQL 167
Query: 64 --VFIAFIPVIAISIWY-QQYYLPSARELSRLVG---VSKAPVIQHFAETI--SGSTI-I 114
+ I P+++I+I + + ++ + +G S +++ E + G +
Sbjct: 168 SIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVET 227
Query: 115 RSFDQVS---RFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMXXXXXXXXXXXXXXXXP 171
+ FD+VS R Q M S P + A++ L F + P
Sbjct: 228 KRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLA-LAFVL-------------YAASFP 273
Query: 172 EGVVDPAIAG-LAVTFGLNLNMLQASLISKLCNLENRIISVER----------ILQYMCI 220
V+D AG + V F +M+ +L+ L +L N +R IL
Sbjct: 274 S-VMDSLTAGTITVVFS---SMI--ALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQE 327
Query: 221 PNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTG 280
+E VIE + G+V+ + Y LR + G +VGR+G
Sbjct: 328 KDEGKRVIE--------RATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSG 379
Query: 281 SGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLD- 339
SGKST+ + R + LR++++++ Q+ +F +V NN+
Sbjct: 380 SGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY 439
Query: 340 -PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXX 398
E+Y+ E+I EA + + K + L++ + ENG S GQRQ + +AR
Sbjct: 440 ARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS 499
Query: 399 XXXXXDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEF 458
DEAT+++DT ++ IQ L + + T + IAHR++++ +D ++++ G+I E
Sbjct: 500 PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVER 559
Query: 459 DSPTRLLENKSSSFAQL 475
+ LLE++ +AQL
Sbjct: 560 GTHNDLLEHR-GVYAQL 575
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 9/249 (3%)
Query: 232 RPNCSWPSQGEVDIHGLQVRY--APHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQT 289
+PN +G V G+ Y P +P VL+GL+ G +VG +G GKST++Q
Sbjct: 1023 KPNML---EGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQL 1078
Query: 290 LFRIVEPTXXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNL---DPLEEYAD 346
L R +P LR++L I+ Q+P +F+ S+ N+ D +
Sbjct: 1079 LERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY 1138
Query: 347 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEA 406
EEI A + + + K +RV + G S GQ+Q + +AR DEA
Sbjct: 1139 EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEA 1198
Query: 407 TASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 466
T+++DT ++ ++Q L + T I IAHR++++ ++D+++++ G ++E + +LL
Sbjct: 1199 TSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258
Query: 467 NKSSSFAQL 475
K F+ +
Sbjct: 1259 QKGIYFSMV 1267
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 120/260 (46%), Gaps = 6/260 (2%)
Query: 217 YMCIPNEPPLVIEASRPNCSWPS--QGEVDIHGLQVRYAPHLPL-VLRGLTCTFLGGMKT 273
+ I N+P I++ + P QG ++ + Y + +L+GL G
Sbjct: 362 FKIIDNKPS--IDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTV 419
Query: 274 GIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGS 333
+VG +G GKST +Q + R+ +P LR + ++ Q+P +F +
Sbjct: 420 ALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATT 479
Query: 334 VHNNLD-PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392
+ N+ E+ +EI +A+ + + + K + ++ V E G S GQ+Q + +AR
Sbjct: 480 IAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIAR 539
Query: 393 XXXXXXXXXXXDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 452
DEAT+++DT ++ ++Q L + T I IAHR+++V ++D++
Sbjct: 540 ALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDG 599
Query: 453 GLIEEFDSPTRLLENKSSSF 472
G+I E + L+ K F
Sbjct: 600 GVIVEQGNHDELMREKGIYF 619
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 9/249 (3%)
Query: 232 RPNCSWPSQGEVDIHGLQVRY--APHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQT 289
+PN +G V G+ Y P +P VL+GL+ G +VG +G GKST++Q
Sbjct: 1023 KPNML---EGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQL 1078
Query: 290 LFRIVEPTXXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNL---DPLEEYAD 346
L R +P LR++L I+ Q+P +F+ S+ N+ D +
Sbjct: 1079 LERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY 1138
Query: 347 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEA 406
EEI A + + + K +RV + G S GQ+Q + +AR DEA
Sbjct: 1139 EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEA 1198
Query: 407 TASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 466
T+++DT ++ ++Q L + T I IAHR++++ ++D+++++ G ++E + +LL
Sbjct: 1199 TSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258
Query: 467 NKSSSFAQL 475
K F+ +
Sbjct: 1259 QKGIYFSMV 1267
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 120/260 (46%), Gaps = 6/260 (2%)
Query: 217 YMCIPNEPPLVIEASRPNCSWPS--QGEVDIHGLQVRYAPHLPL-VLRGLTCTFLGGMKT 273
+ I N+P I++ + P QG ++ + Y + +L+GL G
Sbjct: 362 FKIIDNKPS--IDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTV 419
Query: 274 GIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGS 333
+VG +G GKST +Q + R+ +P LR + ++ Q+P +F +
Sbjct: 420 ALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATT 479
Query: 334 VHNNLD-PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392
+ N+ E+ +EI +A+ + + + K + ++ V E G S GQ+Q + +AR
Sbjct: 480 IAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIAR 539
Query: 393 XXXXXXXXXXXDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 452
DEAT+++DT ++ ++Q L + T I IAHR+++V ++D++
Sbjct: 540 ALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDG 599
Query: 453 GLIEEFDSPTRLLENKSSSF 472
G+I E + L+ K F
Sbjct: 600 GVIVEQGNHDELMREKGIYF 619
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 112/489 (22%), Positives = 215/489 (43%), Gaps = 47/489 (9%)
Query: 9 PMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQ----ILGVIAVISQAGWQ- 63
P++FFD +G +L+R + D V AS+ G +V++ I+G+ ++ WQ
Sbjct: 112 PVAFFDKQSTGTLLSRITYDSEQV----ASSSSGALITVVREGASIIGLFIMMFYYSWQL 167
Query: 64 --VFIAFIPVIAISIWY-QQYYLPSARELSRLVG---VSKAPVIQHFAETI--SGSTI-I 114
+ + P+++I+I + + ++ + +G S +++ E + G +
Sbjct: 168 SIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVET 227
Query: 115 RSFDQVS---RFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMXXXXXXXXXXXXXXXXP 171
+ FD+VS R Q M S P + A++ L F + P
Sbjct: 228 KRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA-LAFVL-------------YAASFP 273
Query: 172 EGVVDPAIAG-LAVTFGLNLNMLQ--ASLISKLCNLENRIISVERILQYMCIPNEPPLVI 228
V+D AG + V F + +++ SL + + + + + + + E
Sbjct: 274 S-VMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD--- 329
Query: 229 EASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQ 288
E R + G+++ + Y LR + G +VGR+GSGKST+
Sbjct: 330 EGKR--VIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 387
Query: 289 TLFRIVEPTXXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLD--PLEEYAD 346
+ R + LR++++++ Q+ +F +V NN+ EEY+
Sbjct: 388 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 447
Query: 347 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEA 406
E+I EA + + K + L++ + ENG S GQRQ + +AR DEA
Sbjct: 448 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 507
Query: 407 TASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 466
T+++DT ++ IQ L + + T + IAHR++++ +D ++++ G+I E + + LL
Sbjct: 508 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 567
Query: 467 NKSSSFAQL 475
+ +AQL
Sbjct: 568 -QHGVYAQL 575
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 119/240 (49%), Gaps = 8/240 (3%)
Query: 250 VRYA-PHLPLV--LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXX 306
VR+A P P + L+GL+ + G +VG +G GKST++ L R +
Sbjct: 1082 VRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGS 1141
Query: 307 XXXXXXXHDLRSRLSIIPQDPTMFEGSVHNN----LDPLEEYADEEIWEALDKCQLGNEV 362
RS+++I+ Q+PT+F+ S+ N LDP ++ EA + N +
Sbjct: 1142 EIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAARLANIHNFI 1200
Query: 363 RKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTL 422
+ E+RV + G S GQ+Q + +AR DEAT+++DT ++ ++Q L
Sbjct: 1201 AELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL 1260
Query: 423 GQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQR 482
+ T I IAHR+ +V+++D + ++S G I E + T+L+ K + + + T++
Sbjct: 1261 DRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMTEK 1320
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 116/255 (45%), Gaps = 9/255 (3%)
Query: 240 QGEVDIHGLQVRY--APHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 297
+G++ + + Y P +P +LRG+ G +VG +G GKST+I L R +
Sbjct: 413 KGDITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL 471
Query: 298 XXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQ 357
LR ++++ Q+P +F ++ N+ +E E E + C+
Sbjct: 472 KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITRE--EMVAACK 529
Query: 358 LGNE---VRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTAT 414
+ N ++ + V + G S GQ+Q + +AR DEAT+++D +
Sbjct: 530 MANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES 589
Query: 415 DNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 474
+ ++Q L + T I IAHR++++ ++D+++ G + E L+ + +
Sbjct: 590 EGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDL 649
Query: 475 LVAE-YTQRSNSSFE 488
+ A+ +T +S+ E
Sbjct: 650 VTAQTFTDAVDSAAE 664
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 2/182 (1%)
Query: 276 VGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVH 335
G +G GKST+ L R +PT + RS++ + QD + G++
Sbjct: 34 AGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIR 93
Query: 336 NNLD-PLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARX 393
NL LE +Y DE++W+ LD + V +L + V E G S GQRQ + +AR
Sbjct: 94 ENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153
Query: 394 XXXXXXXXXXDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYG 453
DEATAS+D+ +++++Q L T + IAHR+++++D+D + + G
Sbjct: 154 FLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKG 213
Query: 454 LI 455
I
Sbjct: 214 QI 215
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 111/244 (45%), Gaps = 9/244 (3%)
Query: 240 QGEVDIHGLQVRYA--PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 297
QG ++ + Y P +P + + + + G T +VG +GSGKST++ L R+ +P
Sbjct: 339 QGALEFKNVHFAYPARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA 397
Query: 298 XXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNL-----DPLEEYADEEIWEA 352
LRS++ + Q+P +F S+ N+ DP EEI
Sbjct: 398 SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDP-SSVTAEEIQRV 456
Query: 353 LDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDT 412
+ +R + V E G S GQ+Q + +AR DEAT+++D
Sbjct: 457 AEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516
Query: 413 ATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSF 472
+ L+Q L + TV+ IAHR++++ +++MV +L G I E+ LL + +
Sbjct: 517 ENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIY 576
Query: 473 AQLV 476
+L+
Sbjct: 577 RKLM 580
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 4 CLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVG-GVAFSVIQILGV-IAVISQAG 61
+ R ++FFD T +G ++NR SSD + + S+ N+ G+ +G+ +
Sbjct: 104 SILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPN 163
Query: 62 WQVFIAFI--PVIAISIWYQQYYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQ 119
F+ + PV I++ Y +Y R+L+++ S A Q E I +R+F +
Sbjct: 164 LATFVLSVVPPVSIIAVIYGRYL----RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGK 219
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 111/244 (45%), Gaps = 9/244 (3%)
Query: 240 QGEVDIHGLQVRYA--PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 297
QG ++ + Y P +P + + + + G T +VG +GSGKST++ L R+ +P
Sbjct: 370 QGALEFKNVHFAYPARPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA 428
Query: 298 XXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNL-----DPLEEYADEEIWEA 352
LRS++ + Q+P +F S+ N+ DP A EEI
Sbjct: 429 SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTA-EEIQRV 487
Query: 353 LDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDT 412
+ +R + V E G S GQ+Q + +AR DEAT+++D
Sbjct: 488 AEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 547
Query: 413 ATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSF 472
+ L+Q L + TV+ IAH ++++ +++MV +L G I E+ LL + +
Sbjct: 548 ENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIY 607
Query: 473 AQLV 476
+L+
Sbjct: 608 RKLM 611
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 4 CLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVG-GVAFSVIQILGV-IAVISQAG 61
+ R ++FFD T +G ++NR SSD + + S+ N+ G+ +G+ +
Sbjct: 135 SILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPN 194
Query: 62 WQVFIAFI--PVIAISIWYQQYYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQ 119
F+ + PV I++ Y +Y R+L+++ S A Q E I +R+F +
Sbjct: 195 LATFVLSVVPPVSIIAVIYGRYL----RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGK 250
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 110/219 (50%), Gaps = 2/219 (0%)
Query: 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXX 299
+G ++ + YA L+ ++ T + G +VG +G+GKST+++ LFR + +
Sbjct: 51 KGRIEFENVHFSYADGRE-TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109
Query: 300 XXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA-DEEIWEALDKCQL 358
LRS + ++PQD +F ++ +N+ A ++E+ A +
Sbjct: 110 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169
Query: 359 GNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLI 418
+ + ++V E G S G++Q V +AR DEAT+++DT+ + I
Sbjct: 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 419 QHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEE 457
Q +L + ++ T I +AHR+++V+++D +L++ G I E
Sbjct: 230 QASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVE 268
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 1/233 (0%)
Query: 239 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTX 298
QG +DI + +Y + +L+ + + G VG +G GKSTLI + R + T
Sbjct: 336 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 299 XXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA-DEEIWEALDKCQ 357
LR+++ ++ QD +F +V N+ A DEE+ EA
Sbjct: 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMAN 455
Query: 358 LGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNL 417
+ + ++ V E G S GQ+Q + +AR DEAT+++D ++++
Sbjct: 456 AHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 515
Query: 418 IQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSS 470
IQ L D T + +AHR++++ +D ++++ G I E + L+ + +
Sbjct: 516 IQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 568
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 1/235 (0%)
Query: 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXX 301
++ ++ RY P P++L + + G GIVGR+GSGKSTL + + R P
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 302 XXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGN 360
+ LR ++ ++ QD + S+ +N+ + E++ A +
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 361 EVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQH 420
+ + + V E G S GQRQ + +AR DEAT+++D ++++I
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 421 TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475
+ + TVI IAHR+++V ++D ++++ G I E LL S ++ L
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 1/235 (0%)
Query: 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXX 301
++ ++ RY P P++L + + G GIVGR+GSGKSTL + + R P
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 302 XXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGN 360
+ LR ++ ++ QD + S+ +N+ + E++ A +
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 126
Query: 361 EVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQH 420
+ + + V E G S GQRQ + +AR DEAT+++D ++++I
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 421 TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475
+ + TVI IAHR+++V ++D ++++ G I E LL S ++ L
Sbjct: 187 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 1/235 (0%)
Query: 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXX 301
++ ++ RY P P++L + + G GIVGR+GSGKSTL + + R P
Sbjct: 3 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 62
Query: 302 XXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGN 360
+ LR ++ ++ QD + S+ +N+ + E++ A +
Sbjct: 63 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 122
Query: 361 EVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQH 420
+ + + V E G S GQRQ + +AR DEAT+++D ++++I
Sbjct: 123 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 421 TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475
+ + TVI IAHR+++V ++D ++++ G I E LL S ++ L
Sbjct: 183 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 108/235 (45%), Gaps = 1/235 (0%)
Query: 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXX 301
++ ++ RY P P++L + + G GIVGR GSGKSTL + + R P
Sbjct: 3 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQV 62
Query: 302 XXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGN 360
+ LR ++ ++ QD + S+ +N+ + E++ A +
Sbjct: 63 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 122
Query: 361 EVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQH 420
+ + + V E G S GQRQ + +AR DEAT+++D ++++I
Sbjct: 123 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
Query: 421 TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475
+ + TVI IAHR+++V ++D ++++ G I E LL S ++ L
Sbjct: 183 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 111/240 (46%), Gaps = 16/240 (6%)
Query: 228 IEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLI 287
IE S N S+P Q H L+ + G +VG TGSGKST+
Sbjct: 18 IEFSDVNFSYPKQ------------TNHR--TLKSINFFIPSGTTCALVGHTGSGKSTIA 63
Query: 288 QTLFRIVEPTXXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSV-HNNLDPLEEYAD 346
+ L+R + + +RS + I+PQD +F ++ +N L + D
Sbjct: 64 KLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATD 122
Query: 347 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEA 406
EE+ +A QL + + K ++ V G S G+RQ + +AR DEA
Sbjct: 123 EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEA 182
Query: 407 TASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 466
T+S+D+ T+ L Q + + T+I IAHR++++ ++ ++LL+ G I E + LL+
Sbjct: 183 TSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 1/235 (0%)
Query: 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXX 301
++ ++ RY P P++L + + G GIVGR+GSGKSTL + + R P
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 302 XXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGN 360
+ LR ++ ++ QD + S+ +N+ + E++ A +
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 126
Query: 361 EVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQH 420
+ + + V E G S GQRQ + +AR D+AT+++D ++++I
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMR 186
Query: 421 TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475
+ + TVI IAHR+++V ++D ++++ G I E LL S ++ L
Sbjct: 187 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 1/235 (0%)
Query: 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXX 301
++ ++ RY P P++L + + G GIVGR+GSGKSTL + + R P
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 302 XXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGN 360
+ LR ++ ++ QD + S+ +N+ + E++ A +
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 361 EVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQH 420
+ + + V E G S GQRQ + +AR DEAT+++D ++++I
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 421 TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475
+ + TVI IA R+++V ++D ++++ G I E LL S ++ L
Sbjct: 181 NMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 1/235 (0%)
Query: 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXX 301
++ ++ RY P P++L + + G GIVGR+GSGKSTL + + R P
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 302 XXXXXXXXXXXXHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGN 360
+ LR ++ ++ QD + S+ +N+ + E++ A +
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 126
Query: 361 EVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQH 420
+ + + V E G S GQRQ + +AR DEAT+++D ++++I
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 421 TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475
+ + TVI IA R+++V ++D ++++ G I E LL S ++ L
Sbjct: 187 NMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 6/225 (2%)
Query: 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLR 317
LVL+GLT T G T +VG GSGKST+ L + +PT L
Sbjct: 31 LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 90
Query: 318 SRLSIIPQDPTMFEGSVHNNL--DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTE 375
+++ + Q+P +F S+ N+ ++ EEI A K + + ++ V E
Sbjct: 91 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDE 150
Query: 376 NGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTL---GQHFSDCTVI 432
G S GQRQ V LAR D+AT+++D + ++ L + +S +V+
Sbjct: 151 AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSR-SVL 209
Query: 433 TIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477
I ++ V +D +L L G I E + +L+E K +A + A
Sbjct: 210 LITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQA 254
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 4/212 (1%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+GLT T G T +VG GSGKST+ L + +PT H L +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 319 RLSIIPQDPTMFEGSVHNNL--DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 376
+++ + Q+P +F S N+ EEI + + + ++ V E
Sbjct: 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET 153
Query: 377 GENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLGQ--HFSDCTVITI 434
G S GQRQ V LAR D+AT+++D +Q L + ++ TV+ I
Sbjct: 154 GNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLI 213
Query: 435 AHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 466
H+++ + +L L G + E + +L+E
Sbjct: 214 THQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 4/212 (1%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+GLT T G T +VG GSGKST+ L + +PT H L +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 319 RLSIIPQDPTMFEGSVHNNL--DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 376
+++ + Q+P +F S N+ EEI + + + ++ V E
Sbjct: 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET 153
Query: 377 GENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLGQ--HFSDCTVITI 434
G ++GQRQ V LAR D AT+++D +Q L + ++ TV+ I
Sbjct: 154 GNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213
Query: 435 AHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 466
+++ + +L L G + E + +L+E
Sbjct: 214 TQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 91/212 (42%), Gaps = 4/212 (1%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+GLT T G T +VG GSGKST+ L + +PT H L +
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 319 RLSIIPQDPTMFEGSVHNNL--DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 376
+++ + Q+P +F S N+ EEI + + + ++ V E
Sbjct: 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET 153
Query: 377 GENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLGQ--HFSDCTVITI 434
G S GQRQ V LAR D AT+++D +Q L + ++ TV+ I
Sbjct: 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213
Query: 435 AHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 466
+++ + +L L G + E + +L+E
Sbjct: 214 TQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 97/230 (42%), Gaps = 23/230 (10%)
Query: 257 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDL 316
P L G+T + G +VG+ G GKS+L+ L ++ +
Sbjct: 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA-------------I 64
Query: 317 RSRLSIIPQDPTMFEGSVHNNL---DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRV 373
+ ++ +PQ + S+ N+ LEE + +A C L ++ + +
Sbjct: 65 KGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQA---CALLPDLEILPSGDRTEI 121
Query: 374 TENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDT-ATDNLIQHTLGQH--FSDCT 430
E G N S GQ+Q V LAR D+ ++VD ++ ++ +G + T
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 431 VITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 480
I + H ++ + D+++++S G I E S LL + +FA+ + Y
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA-RDGAFAEFLRTYA 230
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 102/231 (44%), Gaps = 17/231 (7%)
Query: 260 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRSR 319
+RG++ G G++G +GSGK+T+++ + + PT +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRN 88
Query: 320 LSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRK--NEGKLESRVTEN 376
+ ++ Q+ +F+ +V++N+ + E + + K ++ VR+ +LES
Sbjct: 89 VGLVFQNYALFQHMTVYDNVS----FGLRE--KRVPKDEMDARVRELLRFMRLESYANRF 142
Query: 377 GENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLGQHFSD--CTVITI 434
S GQ+Q V LAR DE A++DT ++ + Q + T + +
Sbjct: 143 PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFV 202
Query: 435 AHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSN 484
H ++ +D VL+L G +E+F +P + E + F VA + SN
Sbjct: 203 THDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF---VASFIGESN 250
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 14/196 (7%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+ + G + G TG+GK++L+ + +EP+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 378
R+S Q + G++ N+ Y + + CQL ++ K K + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 159
Query: 379 NWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDN-LIQHTLGQHFSDCTVITIAHR 437
S GQR + LAR D +D T+ + + + + ++ T I + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 219
Query: 438 ITSVIDSDMVLLLSYG 453
+ + +D +L+L G
Sbjct: 220 MEHLKKADKILILHEG 235
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 15/196 (7%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+ + G + G TG+GK++L+ + +EP+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 378
R+S Q+ + G++ N+ + Y + + CQL ++ K K + E G
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 379 NWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDN-LIQHTLGQHFSDCTVITIAHR 437
S GQR + LAR D +D T+ + + + + ++ T I + +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 438 ITSVIDSDMVLLLSYG 453
+ + +D +L+L G
Sbjct: 219 MEHLKKADKILILHEG 234
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 14/196 (7%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+ + G + G TG+GK++L+ + +EP+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 69
Query: 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 378
R+S Q + G++ N+ Y + + CQL ++ K K + E G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 129
Query: 379 NWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDN-LIQHTLGQHFSDCTVITIAHR 437
S GQR + LAR D +D T+ + + + + ++ T I + +
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 189
Query: 438 ITSVIDSDMVLLLSYG 453
+ + +D +L+L G
Sbjct: 190 MEHLKKADKILILHEG 205
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 15/196 (7%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+ + G + G TG+GK++L+ + +EP+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 378
R+S Q+ + G++ N+ + Y + + CQL ++ K K + E G
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 379 NWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDN-LIQHTLGQHFSDCTVITIAHR 437
S GQR + LAR D +D T+ + + + + ++ T I + +
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 438 ITSVIDSDMVLLLSYG 453
+ + +D +L+L G
Sbjct: 219 MEHLKKADKILILHEG 234
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 14/196 (7%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+ + G + G TG+GK++L+ + +EP+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 81
Query: 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 378
R+S Q + G++ N+ Y + + CQL ++ K K + E G
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 141
Query: 379 NWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDN-LIQHTLGQHFSDCTVITIAHR 437
S GQR + LAR D +D T+ + + + + ++ T I + +
Sbjct: 142 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 201
Query: 438 ITSVIDSDMVLLLSYG 453
+ + +D +L+L G
Sbjct: 202 MEHLKKADKILILHEG 217
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 15/196 (7%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+ + G + G TG+GK++L+ + +EP+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 69
Query: 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 378
R+S Q + G++ N+ + Y + + CQL ++ K K + E G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 128
Query: 379 NWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDN-LIQHTLGQHFSDCTVITIAHR 437
S GQR + LAR D +D T+ + + + + ++ T I + +
Sbjct: 129 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 188
Query: 438 ITSVIDSDMVLLLSYG 453
+ + +D +L+L G
Sbjct: 189 MEHLKKADKILILHEG 204
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 14/196 (7%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+ + G I G TGSGK++L+ + +E +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 378
R+S Q + G++ N+ Y + + CQL ++ K + + + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 379 NWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTAT-DNLIQHTLGQHFSDCTVITIAHR 437
S GQR + LAR D +D T + + + + + ++ T I + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 438 ITSVIDSDMVLLLSYG 453
+ + +D +L+L G
Sbjct: 220 MEHLRKADKILILHQG 235
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 92/220 (41%), Gaps = 25/220 (11%)
Query: 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDL---RSRLSIIPQ 325
G G++G +G+GKSTLI+ + + PT +L R ++ +I Q
Sbjct: 30 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 89
Query: 326 DPTMFEG-SVHNNLD-PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE----- 378
+ +V N+ PLE LD +EV++ +L S V +
Sbjct: 90 HFNLLSSRTVFGNVALPLE----------LDNTP-KDEVKRRVTELLSLVGLGDKHDSYP 138
Query: 379 -NWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLG--QHFSDCTVITIA 435
N S GQ+Q V +AR DEAT+++D AT I L T++ I
Sbjct: 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLIT 198
Query: 436 HRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 474
H + V D V ++S G + E D+ + + + + AQ
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 238
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 14/196 (7%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+ + G I G TGSGK++L+ + +E +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 378
R+S Q + G++ N+ Y + + CQL ++ K + + + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 379 NWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTAT-DNLIQHTLGQHFSDCTVITIAHR 437
S GQR + LAR D +D T + + + + + ++ T I + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 438 ITSVIDSDMVLLLSYG 453
+ + +D +L+L G
Sbjct: 220 MEHLRKADKILILHQG 235
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 14/196 (7%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+ + G I G TGSGK++L+ + +E +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 378
R+S Q + G++ N+ Y + + CQL ++ K + + + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 379 NWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTAT-DNLIQHTLGQHFSDCTVITIAHR 437
S GQR + LAR D +D T + + + + + ++ T I + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 438 ITSVIDSDMVLLLSYG 453
+ + +D +L+L G
Sbjct: 220 MEHLRKADKILILHQG 235
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 14/196 (7%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+ + G I G TGSGK++L+ + +E +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 378
R+S Q + G++ N+ Y + + CQL ++ K + + + E G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 379 NWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTAT-DNLIQHTLGQHFSDCTVITIAHR 437
S GQR + LAR D +D T + + + + + ++ T I + +
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 438 ITSVIDSDMVLLLSYG 453
+ + +D +L+L G
Sbjct: 220 MEHLRKADKILILHQG 235
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 76/196 (38%), Gaps = 14/196 (7%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+ + G + G TG+GK++L+ + +EP+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 378
R+S Q + G++ N+ Y + + CQL ++ K K + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 159
Query: 379 NWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDN-LIQHTLGQHFSDCTVITIAHR 437
S GQ+ + LAR D +D T+ + + + + ++ T I + +
Sbjct: 160 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 219
Query: 438 ITSVIDSDMVLLLSYG 453
+ + +D +L+L G
Sbjct: 220 MEHLKKADKILILHEG 235
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 25/220 (11%)
Query: 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDL---RSRLSIIPQ 325
G G++G +G+GKSTLI+ + + PT +L R ++ +I Q
Sbjct: 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 112
Query: 326 DPTMFEG-SVHNNLD-PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE----- 378
+ +V N+ PLE LD +EV++ +L S V +
Sbjct: 113 HFNLLSSRTVFGNVALPLE----------LDNTP-KDEVKRRVTELLSLVGLGDKHDSYP 161
Query: 379 -NWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLG--QHFSDCTVITIA 435
N S GQ+Q V +AR D+AT+++D AT I L T++ I
Sbjct: 162 SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLIT 221
Query: 436 HRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 474
H + V D V ++S G + E D+ + + + + AQ
Sbjct: 222 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 81/198 (40%), Gaps = 19/198 (9%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+ + G I G TGSGK++L+ + +E +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------G 99
Query: 319 RLSIIPQDPTMFEGSVHNNLDPL--EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 376
R+S Q + G++ N+ + +EY + + +A CQL ++ K + + + E
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVVKA---CQLQQDITKFAEQDNTVLGEG 156
Query: 377 GENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTAT-DNLIQHTLGQHFSDCTVITIA 435
G S GQR + LAR D +D T + + + + + ++ T I +
Sbjct: 157 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 216
Query: 436 HRITSVIDSDMVLLLSYG 453
++ + +D +L+L G
Sbjct: 217 SKMEHLRKADKILILHQG 234
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 77/196 (39%), Gaps = 15/196 (7%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
VL+ + G + G TG+GK++L+ + +EP+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-------------G 99
Query: 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 378
R+S Q + G++ N+ + Y + + CQL ++ K K + E G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 379 NWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDN-LIQHTLGQHFSDCTVITIAHR 437
S GQ+ + LAR D +D T+ + + + + ++ T I + +
Sbjct: 159 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 438 ITSVIDSDMVLLLSYG 453
+ + +D +L+L G
Sbjct: 219 MEHLKKADKILILHEG 234
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 26/237 (10%)
Query: 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQ--TLFRIVEPTXXX 300
+D+H L+ + VL+G+ G ++G +GSGKST ++ L +
Sbjct: 4 IDVHQLKKSFGSLE--VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 61
Query: 301 XXXXXXXXXXXXXHDLRSRLSIIPQDPTMF-EGSVHNN--LDPLE------EYADEEIWE 351
+ +R + ++ Q +F +V NN L P++ E A+ + E
Sbjct: 62 IDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAME 121
Query: 352 ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVD 411
LDK L+ + ++ S GQ Q V +AR DE T+++D
Sbjct: 122 LLDKV-----------GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 170
Query: 412 TATDNLIQHTLGQHFSD-CTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466
+ + Q ++ T++ + H + + D VL + G I E P L +
Sbjct: 171 PEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 26/237 (10%)
Query: 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQ--TLFRIVEPTXXX 300
+D+H L+ + VL+G+ G ++G +GSGKST ++ L +
Sbjct: 25 IDVHQLKKSFGSLE--VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
Query: 301 XXXXXXXXXXXXXHDLRSRLSIIPQDPTMF-EGSVHNN--LDPLE------EYADEEIWE 351
+ +R + ++ Q +F +V NN L P++ E A+ + E
Sbjct: 83 IDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAME 142
Query: 352 ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVD 411
LDK L+ + ++ S GQ Q V +AR DE T+++D
Sbjct: 143 LLDKV-----------GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
Query: 412 TATDNLIQHTLGQHFSD-CTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466
+ + Q ++ T++ + H + + D VL + G I E P L +
Sbjct: 192 PEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 100/240 (41%), Gaps = 24/240 (10%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRS 318
+L+G++ G G++G G+GK+T ++ + +++P+ H++R
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS-SGIVTVFGKNVVEEPHEVRK 88
Query: 319 RLSIIPQDPTMFEGSVHNNLDPLEE-------YA--DEEIWEALDKCQLGNEVRKNEGKL 369
+S +P+ E + N+ +E YA EI E +++ E+ K+
Sbjct: 89 LISYLPE-----EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA---TEIAGLGEKI 140
Query: 370 ESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLGQHFSD- 428
+ RV+ +S G + + +AR DE T+ +D ++ L Q +
Sbjct: 141 KDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196
Query: 429 CTVITIAHRITSV-IDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQRSNSSF 487
T++ +H + V D + L+ G I E + L E + + V E + + +F
Sbjct: 197 LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSENF 256
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 25/220 (11%)
Query: 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDL---RSRLSIIPQ 325
G G++G +G+GKSTLI+ + + PT +L R ++ I Q
Sbjct: 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQ 112
Query: 326 DPTMFEG-SVHNNLD-PLE------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 377
+ +V N+ PLE + + E L LG+ K +S +
Sbjct: 113 HFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-------KHDSYPS--- 162
Query: 378 ENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLG--QHFSDCTVITIA 435
N S GQ+Q V +AR D+AT+++D AT I L T++ I
Sbjct: 163 -NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLIT 221
Query: 436 HRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 474
H V D V ++S G + E D+ + + + + AQ
Sbjct: 222 HEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 20/162 (12%)
Query: 260 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXX--XXXXXXXHDLR 317
L+G+ G T I+G G GKSTL Q I++P+ LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 318 SRLSIIPQDPT--MFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKN-EGKLESRVT 374
+ I+ QDP +F SV+ ++ + A++ +E+RK + L+
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVS----------FGAVNMKLPEDEIRKRVDNALKRTGI 133
Query: 375 ENGEN-----WSMGQRQLVCLARXXXXXXXXXXXDEATASVD 411
E+ ++ S GQ++ V +A DE TA +D
Sbjct: 134 EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 36/157 (22%)
Query: 274 GIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRSRLSIIPQ-------- 325
++G+ G GKSTL+ L I P ++ + +PQ
Sbjct: 35 AVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSIGFVPQFFSSPFAY 81
Query: 326 ---DPTMFEGSVHNNLDPLEEYADEEI-WEALDKCQLGNEVRKNEGKLESRVTENGENWS 381
D + S H N + D ++ +ALD L + ++ L S
Sbjct: 82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSL-----------S 130
Query: 382 MGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLI 418
GQRQL+ +AR DE T+++D A +++
Sbjct: 131 GGQRQLILIARAIASECKLILLDEPTSALDLANQDIV 167
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 22/212 (10%)
Query: 275 IVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDLRSRLSIIPQDPTMFEG-S 333
++G TG+GKS ++ + IV+P R + +PQD +F S
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 334 VHNNL-----DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388
V+ N+ + D + E +K + + + + +L S G+RQ V
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARL-----------SGGERQRV 135
Query: 389 CLARXXXXXXXXXXXDEATASVDTATDNLIQHTLG--QHFSDCTVITIAHR-ITSVIDSD 445
LAR DE ++VD T ++ L Q D ++ + H I + + +D
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195
Query: 446 MVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477
V ++ G I E L K+ A+ ++
Sbjct: 196 EVAVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 102/250 (40%), Gaps = 30/250 (12%)
Query: 262 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT----XXXXXXXXXXXXXXXXHDLR 317
G++ L T IVG + SGKST+I+ + + + P +LR
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 318 ----SRLSIIPQ------DPTMFEGSVHNNLDPLEEYA-----DEEIWEALDKCQLGNEV 362
++++PQ +PTM + + D +E + E I +A +K ++ V
Sbjct: 86 KIRWKEIALVPQAAQQSLNPTM--KVIEHFKDTVEAHGVRWSHSELIEKASEKLRM---V 140
Query: 363 RKNEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATD-NLIQ-H 420
R N E+ + S G +Q V +A DE T+++D T ++IQ
Sbjct: 141 RLNP---EAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLL 197
Query: 421 TLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 479
+ T+I + H I + +D V ++ G + E++S ++ +N + + +
Sbjct: 198 KELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTRGLINS 257
Query: 480 TQRSNSSFEK 489
N+ K
Sbjct: 258 IMAVNADMSK 267
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 368 KLESRVTENGEN-WSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNLIQHTLGQ-- 424
+LE R + N S GQ+Q V +AR DE T ++D+ T I L +
Sbjct: 133 ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLN 192
Query: 425 HFSDCTVITIAHRITSVIDSDMVLLLSYGLIE 456
TV+ + H I + ++ L G +E
Sbjct: 193 EEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 25/223 (11%)
Query: 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXX 302
++++ + RY + VL+ + F G +VG+ GSGK+TL++ L ++
Sbjct: 12 IELNSVSFRY--NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFL 69
Query: 303 XXXXXXXXXXXHDLRSRLSIIPQDPT------MFEGSVHNNLDPLEEYADEEIWEALDKC 356
LR + + Q+P+ E V +L+ + LD+
Sbjct: 70 DGSPADPFL----LRKNVGYVFQNPSSQIIGATVEEDVAFSLEIM----------GLDES 115
Query: 357 QLGNEVRK--NEGKLESRVTENGENWSMGQRQLVCLARXXXXXXXXXXXDEATASVDTAT 414
++ ++K L + N S GQ+Q + +A DE + +D +
Sbjct: 116 EMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPS 175
Query: 415 DNLIQHTLGQHFSDCT-VITIAHRITSVIDSDMVLLLSYGLIE 456
I L ++ +I + H + + D D +L +S G I+
Sbjct: 176 QREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTID 218
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 275 IVGRTGSGKSTLIQTLFRIVEPT 297
+ G TGSGKSTL+Q + ++EPT
Sbjct: 38 VAGNTGSGKSTLLQIVAGLIEPT 60
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 275 IVGRTGSGKSTLIQTLFRIVEPT 297
+ G TGSGKSTL+Q + ++EPT
Sbjct: 40 VAGNTGSGKSTLLQIVAGLIEPT 62
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 260 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 294
LRG+ +F G+ T + G +GSGKSTL+ + V
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAV 692
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 41/221 (18%)
Query: 260 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDL--- 316
L+ + G I+G +GSGKST++ + + +PT +L
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 317 -RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQL-----------GNEVRK 364
R ++ + Q NL PL AL+ +L G E RK
Sbjct: 81 RRDKIGFVFQ---------QFNLIPL--------LTALENVELPLIFKYRGAMSGEERRK 123
Query: 365 NE------GKLESRVTENGEN-WSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNL 417
+LE R + N S GQ+Q V +AR D+ T ++D+ T
Sbjct: 124 RALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEK 183
Query: 418 IQHTLGQ--HFSDCTVITIAHRITSVIDSDMVLLLSYGLIE 456
I L + TV+ + H I + ++ L G +E
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 41/221 (18%)
Query: 260 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTXXXXXXXXXXXXXXXXHDL--- 316
L+ + G I+G +GSGKST++ + + +PT +L
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 317 -RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQL-----------GNEVRK 364
R ++ + Q NL PL AL+ +L G E RK
Sbjct: 81 RRDKIGFVFQ---------QFNLIPL--------LTALENVELPLIFKYRGAMSGEERRK 123
Query: 365 NE------GKLESRVTENGEN-WSMGQRQLVCLARXXXXXXXXXXXDEATASVDTATDNL 417
+LE R + N S GQ+Q V +AR D+ T ++D+ T
Sbjct: 124 RALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEK 183
Query: 418 IQHTLGQ--HFSDCTVITIAHRITSVIDSDMVLLLSYGLIE 456
I L + TV+ + H I + ++ L G +E
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 297
+L+G++ + G I+G +GSGKSTL+ L + PT
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT 57
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 208 IISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDI 245
+ +ERI CIP++PP + C W QG V +
Sbjct: 7 VNELERI---NCIPDQPPTKATCDQRGCCWNPQGAVSV 41
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 208 IISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDI 245
+ +ERI CIP++PP + C W QG V +
Sbjct: 7 VNELERI---NCIPDQPPTKATCDQRGCCWNPQGAVSV 41
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 275 IVGRTGSGKSTLIQTLFR 292
+VG++G GKSTL+ TLF+
Sbjct: 7 VVGQSGLGKSTLVNTLFK 24
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 272 KTGIVGRTGSGKSTLIQTLFR 292
K IVG TGSGK+TL+Q L +
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXK 24
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 272 KTGIVGRTGSGKSTLIQTLFR 292
K IVG TGSGK+TL+Q L +
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXK 22
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTL 290
+LRGL+ G I+G GSGKSTL TL
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL 47
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTL 290
+LRGL+ G I+G GSGKSTL TL
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL 66
>pdb|3H2I|A Chain A, Crystal Structure Of N228w Mutant Of The Rice Cell Wall
Degrading Esterase Lipa From Xanthomonas Oryzae
Length = 397
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 82 YLPSARELSRLVGVSKAP--VIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKF 139
YL SA E S + +A V+QH +SG ++ + Q + ++ + +F
Sbjct: 138 YLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEF 197
Query: 140 HIAAA 144
H+ A+
Sbjct: 198 HLVAS 202
>pdb|3H2G|A Chain A, Crystal Structure Of A Rice Cell Wall Degrading Esterase
Lipa From Xanthomonas Oryzae
pdb|3H2J|A Chain A, Crystal Structure Of The Rice Cell Wall Degrading Esterase
Lipa From Xanthomonas Oryzae
pdb|3H2K|A Chain A, Crystal Structure Of A Ligand-Bound Form Of The Rice Cell
Wall Degrading Esterase Lipa From Xanthomonas Oryzae
Length = 397
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 82 YLPSARELSRLVGVSKAP--VIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKF 139
YL SA E S + +A V+QH +SG ++ + Q + ++ + +F
Sbjct: 138 YLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEF 197
Query: 140 HIAAA 144
H+ A+
Sbjct: 198 HLVAS 202
>pdb|3H2H|A Chain A, Crystal Structure Of G231f Mutant Of The Rice Cell Wall
Degrading Esterase Lipa From Xanthomonas Oryzae
Length = 397
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 82 YLPSARELSRLVGVSKAP--VIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKF 139
YL SA E S + +A V+QH +SG ++ + Q + ++ + +F
Sbjct: 138 YLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEF 197
Query: 140 HIAAA 144
H+ A+
Sbjct: 198 HLVAS 202
>pdb|1YVY|A Chain A, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YVY|B Chain B, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YTM|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
pdb|1YTM|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
Length = 532
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 327 PTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLES 371
PT +G LDP YAD WE K L +KN K ES
Sbjct: 477 PTELKGVDTKILDPRNTYADASEWEVKAK-DLAERFQKNFKKFES 520
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,309,761
Number of Sequences: 62578
Number of extensions: 447510
Number of successful extensions: 1322
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1199
Number of HSP's gapped (non-prelim): 93
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)