Query 011281
Match_columns 489
No_of_seqs 209 out of 2608
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 23:36:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 6.7E-96 1E-100 765.7 52.1 481 1-485 227-710 (716)
2 COG2274 SunT ABC-type bacterio 100.0 9.4E-91 2E-95 753.0 56.6 473 2-479 234-708 (709)
3 KOG0054 Multidrug resistance-a 100.0 5.3E-88 1.1E-92 758.0 52.0 481 1-481 897-1377(1381)
4 KOG0055 Multidrug/pheromone ex 100.0 2.2E-87 4.7E-92 737.1 53.7 476 1-480 746-1226(1228)
5 PRK11174 cysteine/glutathione 100.0 2.5E-86 5.5E-91 721.7 58.6 475 1-481 102-586 (588)
6 COG1132 MdlB ABC-type multidru 100.0 8.8E-85 1.9E-89 706.4 58.2 473 1-480 91-565 (567)
7 PLN03130 ABC transporter C fam 100.0 2.2E-84 4.9E-89 763.1 62.1 479 1-480 992-1475(1622)
8 TIGR00957 MRP_assoc_pro multi 100.0 1.9E-84 4.2E-89 764.1 61.5 476 1-478 1044-1519(1522)
9 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5.8E-84 1.3E-88 714.3 60.3 470 1-479 215-685 (686)
10 COG4988 CydD ABC-type transpor 100.0 3.3E-83 7.2E-88 658.9 55.1 476 1-481 79-557 (559)
11 PRK11176 lipid transporter ATP 100.0 4.7E-83 1E-87 695.4 58.9 473 1-479 104-579 (582)
12 PLN03232 ABC transporter C fam 100.0 2.9E-83 6.2E-88 753.2 61.2 480 1-481 989-1473(1495)
13 TIGR00958 3a01208 Conjugate Tr 100.0 6E-83 1.3E-87 706.8 57.2 468 1-475 240-710 (711)
14 PRK11160 cysteine/glutathione 100.0 1.7E-82 3.6E-87 688.3 58.9 471 1-477 99-572 (574)
15 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 7.2E-83 1.6E-87 708.4 57.5 472 1-476 233-709 (710)
16 PRK10790 putative multidrug tr 100.0 2.4E-82 5.1E-87 690.9 60.0 473 1-481 104-577 (592)
17 TIGR01193 bacteriocin_ABC ABC- 100.0 1E-82 2.2E-87 706.7 57.4 470 1-477 235-707 (708)
18 COG4987 CydC ABC-type transpor 100.0 5E-83 1.1E-87 647.5 49.4 470 2-477 98-571 (573)
19 PTZ00243 ABC transporter; Prov 100.0 3E-82 6.4E-87 744.1 62.0 480 1-480 1037-1547(1560)
20 TIGR03375 type_I_sec_LssB type 100.0 1.2E-81 2.7E-86 696.5 58.3 462 1-467 226-689 (694)
21 KOG0055 Multidrug/pheromone ex 100.0 3.1E-83 6.6E-88 704.4 41.7 476 2-480 111-589 (1228)
22 TIGR02203 MsbA_lipidA lipid A 100.0 1E-80 2.2E-85 675.9 58.6 473 1-479 93-568 (571)
23 PTZ00265 multidrug resistance 100.0 4.4E-81 9.6E-86 729.0 58.5 479 1-479 905-1465(1466)
24 TIGR01271 CFTR_protein cystic 100.0 2.6E-80 5.7E-85 727.1 60.9 476 1-480 964-1453(1490)
25 PRK13657 cyclic beta-1,2-gluca 100.0 8.6E-80 1.9E-84 670.1 59.9 477 1-482 95-573 (588)
26 TIGR01846 type_I_sec_HlyB type 100.0 5E-80 1.1E-84 683.4 58.9 473 1-479 218-692 (694)
27 PRK10789 putative multidrug tr 100.0 4.1E-79 9E-84 661.5 59.1 475 1-481 75-552 (569)
28 TIGR01192 chvA glucan exporter 100.0 2.5E-78 5.3E-83 656.8 60.7 478 1-483 95-574 (585)
29 TIGR02204 MsbA_rel ABC transpo 100.0 1.4E-78 3E-83 659.7 58.3 476 1-479 97-575 (576)
30 TIGR02868 CydC thiol reductant 100.0 5.7E-79 1.2E-83 656.1 53.4 435 1-438 92-529 (529)
31 KOG0056 Heavy metal exporter H 100.0 1.6E-80 3.4E-85 617.4 33.0 473 1-480 298-775 (790)
32 KOG0057 Mitochondrial Fe/S clu 100.0 5.2E-78 1.1E-82 611.4 48.6 471 2-480 114-587 (591)
33 TIGR02857 CydD thiol reductant 100.0 5.7E-77 1.2E-81 640.6 54.9 445 1-450 83-529 (529)
34 TIGR01842 type_I_sec_PrtD type 100.0 1E-74 2.2E-79 624.6 57.0 454 1-466 85-542 (544)
35 COG5265 ATM1 ABC-type transpor 100.0 3.8E-76 8.3E-81 580.2 35.6 471 2-477 22-496 (497)
36 PTZ00265 multidrug resistance 100.0 5.7E-74 1.2E-78 669.3 56.6 476 1-480 136-729 (1466)
37 TIGR01194 cyc_pep_trnsptr cycl 100.0 9.2E-72 2E-76 602.1 54.5 448 1-458 92-551 (555)
38 PLN03232 ABC transporter C fam 100.0 8.3E-71 1.8E-75 647.8 56.6 458 1-479 380-840 (1495)
39 PLN03130 ABC transporter C fam 100.0 1.5E-70 3.2E-75 646.2 57.7 457 1-479 380-840 (1622)
40 KOG0054 Multidrug resistance-a 100.0 1.7E-68 3.8E-73 600.5 53.0 456 2-477 282-741 (1381)
41 PRK10522 multidrug transporter 100.0 8.9E-68 1.9E-72 570.7 55.1 446 1-465 87-538 (547)
42 TIGR00957 MRP_assoc_pro multi 100.0 4.2E-65 9E-70 600.4 58.7 459 1-478 397-861 (1522)
43 COG4618 ArpD ABC-type protease 100.0 3.3E-66 7.1E-71 520.5 40.9 431 27-467 124-561 (580)
44 TIGR01271 CFTR_protein cystic 100.0 2.8E-62 6.1E-67 574.8 56.1 451 1-476 161-645 (1490)
45 TIGR00954 3a01203 Peroxysomal 100.0 2.1E-61 4.6E-66 529.2 48.4 432 4-452 181-653 (659)
46 PTZ00243 ABC transporter; Prov 100.0 1.3E-59 2.7E-64 552.9 55.5 461 1-478 324-880 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 4.1E-56 8.9E-61 437.6 26.9 235 242-478 2-236 (275)
48 COG1126 GlnQ ABC-type polar am 100.0 1.1E-55 2.3E-60 402.8 22.9 223 242-477 2-237 (240)
49 COG1125 OpuBA ABC-type proline 100.0 2.5E-53 5.5E-58 394.8 19.9 217 243-472 2-231 (309)
50 COG1117 PstB ABC-type phosphat 100.0 2.8E-53 6.2E-58 385.3 18.2 220 241-469 6-240 (253)
51 COG1135 AbcC ABC-type metal io 100.0 1E-52 2.2E-57 401.8 21.7 224 243-477 2-243 (339)
52 PRK14257 phosphate ABC transpo 100.0 1.1E-51 2.4E-56 416.3 27.9 226 237-469 75-316 (329)
53 cd03288 ABCC_SUR2 The SUR doma 100.0 3E-51 6.5E-56 401.1 28.2 240 239-478 16-255 (257)
54 cd03252 ABCC_Hemolysin The ABC 100.0 3.5E-51 7.5E-56 396.0 27.0 234 243-477 1-235 (237)
55 cd03244 ABCC_MRP_domain2 Domai 100.0 2.5E-50 5.4E-55 385.9 25.9 219 242-460 2-220 (221)
56 cd03251 ABCC_MsbA MsbA is an e 100.0 5.4E-50 1.2E-54 386.9 26.5 231 243-474 1-232 (234)
57 COG3839 MalK ABC-type sugar tr 100.0 2.2E-50 4.7E-55 399.8 22.7 216 242-472 3-229 (338)
58 cd03253 ABCC_ATM1_transporter 100.0 1.2E-49 2.6E-54 385.0 27.0 233 243-477 1-234 (236)
59 cd03254 ABCC_Glucan_exporter_l 100.0 1.1E-49 2.4E-54 383.5 25.6 225 242-467 2-227 (229)
60 COG1120 FepC ABC-type cobalami 100.0 4.1E-50 8.9E-55 383.7 22.0 220 242-476 2-236 (258)
61 COG1127 Ttg2A ABC-type transpo 100.0 1.3E-49 2.8E-54 368.3 22.6 225 241-478 7-247 (263)
62 TIGR02314 ABC_MetN D-methionin 100.0 2.2E-49 4.8E-54 400.4 24.7 223 243-476 2-241 (343)
63 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 5.5E-49 1.2E-53 380.9 25.7 232 243-475 1-234 (238)
64 COG3842 PotA ABC-type spermidi 100.0 1E-49 2.2E-54 397.0 21.0 217 241-472 4-232 (352)
65 cd03245 ABCC_bacteriocin_expor 100.0 5.4E-49 1.2E-53 376.4 25.2 218 242-459 2-220 (220)
66 COG1124 DppF ABC-type dipeptid 100.0 5.5E-49 1.2E-53 365.9 22.8 225 242-477 3-242 (252)
67 COG1116 TauB ABC-type nitrate/ 100.0 3.2E-49 7E-54 370.8 21.1 196 242-455 3-211 (248)
68 COG3840 ThiQ ABC-type thiamine 100.0 3.7E-49 7.9E-54 349.6 20.1 210 243-469 2-222 (231)
69 COG1136 SalX ABC-type antimicr 100.0 1.4E-48 3.1E-53 366.2 23.6 204 243-457 2-222 (226)
70 COG2884 FtsE Predicted ATPase 100.0 2.7E-49 5.9E-54 353.1 17.3 207 243-461 2-221 (223)
71 cd03261 ABC_Org_Solvent_Resist 100.0 1.5E-48 3.2E-53 377.2 23.6 212 243-467 1-227 (235)
72 COG1122 CbiO ABC-type cobalt t 100.0 1.2E-48 2.5E-53 373.3 21.6 214 242-467 3-229 (235)
73 cd03260 ABC_PstB_phosphate_tra 100.0 1.6E-48 3.6E-53 374.9 21.8 211 243-464 1-227 (227)
74 PRK11650 ugpC glycerol-3-phosp 100.0 5.7E-48 1.2E-52 393.0 25.9 217 242-472 3-230 (356)
75 cd03369 ABCC_NFT1 Domain 2 of 100.0 8.5E-48 1.8E-52 364.7 25.2 205 239-461 3-207 (207)
76 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.2E-48 7E-53 368.8 22.2 209 242-467 4-228 (254)
77 COG3638 ABC-type phosphate/pho 100.0 1.9E-48 4.1E-53 359.7 19.8 221 242-477 3-245 (258)
78 PRK14269 phosphate ABC transpo 100.0 1E-47 2.2E-52 373.8 25.5 221 243-472 3-236 (246)
79 PRK13631 cbiO cobalt transport 100.0 1.4E-47 3E-52 385.3 25.7 218 240-467 19-266 (320)
80 PRK11432 fbpC ferric transport 100.0 1E-47 2.2E-52 390.1 24.6 216 242-472 6-232 (351)
81 PRK14250 phosphate ABC transpo 100.0 2.7E-47 5.9E-52 369.6 26.3 222 242-476 3-231 (241)
82 PRK11153 metN DL-methionine tr 100.0 1.4E-47 3E-52 389.3 24.4 219 243-472 2-236 (343)
83 PRK13650 cbiO cobalt transport 100.0 1.8E-47 3.9E-52 378.5 24.0 215 242-467 4-230 (279)
84 TIGR03265 PhnT2 putative 2-ami 100.0 2.3E-47 5E-52 388.1 24.4 216 242-472 4-230 (353)
85 cd03248 ABCC_TAP TAP, the Tran 100.0 2.3E-47 5.1E-52 366.6 23.1 216 240-455 9-226 (226)
86 TIGR00960 3a0501s02 Type II (G 100.0 1E-47 2.2E-52 366.6 20.4 202 243-455 2-216 (216)
87 PRK14242 phosphate transporter 100.0 5E-47 1.1E-51 370.5 25.5 219 241-468 5-239 (253)
88 PRK14273 phosphate ABC transpo 100.0 5.5E-47 1.2E-51 370.4 25.5 222 242-472 7-244 (254)
89 cd03296 ABC_CysA_sulfate_impor 100.0 5.9E-47 1.3E-51 366.9 25.0 211 243-468 3-228 (239)
90 COG4615 PvdE ABC-type sideroph 100.0 1.3E-45 2.9E-50 360.6 34.5 438 2-460 88-531 (546)
91 cd03263 ABC_subfamily_A The AB 100.0 2.7E-47 5.8E-52 364.7 22.0 210 243-464 1-219 (220)
92 PRK13647 cbiO cobalt transport 100.0 3.6E-47 7.9E-52 375.4 23.5 212 242-465 4-226 (274)
93 cd03219 ABC_Mj1267_LivG_branch 100.0 3E-47 6.6E-52 368.2 22.4 212 243-467 1-233 (236)
94 TIGR00972 3a0107s01c2 phosphat 100.0 7E-47 1.5E-51 368.2 25.0 219 243-470 2-236 (247)
95 PRK09452 potA putrescine/sperm 100.0 5.7E-47 1.2E-51 387.3 25.5 217 241-472 13-240 (375)
96 PRK10851 sulfate/thiosulfate t 100.0 7.5E-47 1.6E-51 384.4 26.0 215 243-472 3-232 (353)
97 PRK10744 pstB phosphate transp 100.0 1.3E-46 2.8E-51 369.1 26.7 222 241-471 12-249 (260)
98 cd03256 ABC_PhnC_transporter A 100.0 4.3E-47 9.2E-52 368.3 22.7 212 243-466 1-234 (241)
99 TIGR01186 proV glycine betaine 100.0 2.5E-47 5.4E-52 387.6 22.0 205 258-473 7-226 (363)
100 PRK13637 cbiO cobalt transport 100.0 5.5E-47 1.2E-51 376.4 23.8 213 243-466 3-234 (287)
101 TIGR03258 PhnT 2-aminoethylpho 100.0 6.6E-47 1.4E-51 385.4 24.4 218 240-472 3-234 (362)
102 cd03295 ABC_OpuCA_Osmoprotecti 100.0 7.4E-47 1.6E-51 366.9 23.5 214 243-468 1-227 (242)
103 PRK13635 cbiO cobalt transport 100.0 8.5E-47 1.8E-51 373.6 24.2 215 242-467 5-230 (279)
104 PRK14259 phosphate ABC transpo 100.0 2.2E-46 4.7E-51 369.0 27.0 225 239-472 10-259 (269)
105 TIGR02315 ABC_phnC phosphonate 100.0 6.6E-47 1.4E-51 367.4 22.8 211 243-465 2-234 (243)
106 PRK14267 phosphate ABC transpo 100.0 1.1E-46 2.3E-51 368.2 24.3 224 242-474 4-245 (253)
107 PRK14247 phosphate ABC transpo 100.0 1.2E-46 2.7E-51 367.1 24.7 222 242-472 3-240 (250)
108 PRK13643 cbiO cobalt transport 100.0 7.9E-47 1.7E-51 375.5 23.8 213 243-466 2-233 (288)
109 cd03250 ABCC_MRP_domain1 Domai 100.0 1E-46 2.2E-51 356.5 22.9 199 243-454 1-204 (204)
110 cd03258 ABC_MetN_methionine_tr 100.0 7.4E-47 1.6E-51 364.8 22.4 214 243-467 2-231 (233)
111 PRK14235 phosphate transporter 100.0 2.4E-46 5.1E-51 368.4 26.1 220 240-468 17-253 (267)
112 cd03259 ABC_Carb_Solutes_like 100.0 5.8E-47 1.3E-51 360.6 21.1 202 243-459 1-213 (213)
113 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 6.5E-47 1.4E-51 361.5 20.6 202 243-455 1-218 (218)
114 PRK11629 lolD lipoprotein tran 100.0 1.3E-46 2.8E-51 363.2 22.8 208 242-460 5-228 (233)
115 PRK11000 maltose/maltodextrin 100.0 1.3E-46 2.7E-51 385.4 24.1 216 242-472 3-229 (369)
116 cd03294 ABC_Pro_Gly_Bertaine T 100.0 9.3E-47 2E-51 371.6 22.2 218 244-474 26-258 (269)
117 PRK15079 oligopeptide ABC tran 100.0 2.2E-46 4.8E-51 378.0 25.4 223 242-475 8-260 (331)
118 cd03226 ABC_cobalt_CbiO_domain 100.0 1E-46 2.2E-51 356.9 21.5 198 244-456 1-205 (205)
119 cd03224 ABC_TM1139_LivF_branch 100.0 1.4E-46 3E-51 360.1 22.6 212 243-466 1-221 (222)
120 cd03291 ABCC_CFTR1 The CFTR su 100.0 9.5E-46 2.1E-50 365.4 28.9 219 240-476 37-256 (282)
121 PRK14274 phosphate ABC transpo 100.0 3.8E-46 8.2E-51 365.5 25.8 222 242-472 12-249 (259)
122 PRK09536 btuD corrinoid ABC tr 100.0 2.4E-46 5.2E-51 384.8 25.5 220 242-476 3-236 (402)
123 PRK13651 cobalt transporter AT 100.0 1.8E-46 3.9E-51 375.0 23.7 214 243-467 3-255 (305)
124 PRK13537 nodulation ABC transp 100.0 1.3E-46 2.9E-51 376.5 22.8 212 242-467 7-228 (306)
125 PRK13646 cbiO cobalt transport 100.0 1.9E-46 4.1E-51 372.5 23.6 214 243-467 3-236 (286)
126 PRK13634 cbiO cobalt transport 100.0 1.9E-46 4.1E-51 373.1 23.6 215 243-467 3-236 (290)
127 PRK14245 phosphate ABC transpo 100.0 3.1E-46 6.8E-51 364.3 24.4 222 242-472 3-240 (250)
128 PRK14248 phosphate ABC transpo 100.0 4.5E-46 9.7E-51 366.8 25.7 220 241-469 20-255 (268)
129 PRK14251 phosphate ABC transpo 100.0 2.7E-46 6E-51 364.9 23.9 223 242-473 4-242 (251)
130 TIGR03005 ectoine_ehuA ectoine 100.0 3.4E-46 7.3E-51 364.5 24.3 217 243-472 1-242 (252)
131 COG1118 CysA ABC-type sulfate/ 100.0 6.1E-47 1.3E-51 361.3 18.5 216 242-472 2-233 (345)
132 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.8E-46 8.2E-51 360.6 24.3 211 243-467 2-222 (236)
133 TIGR02769 nickel_nikE nickel i 100.0 4.7E-46 1E-50 366.0 25.3 224 243-476 3-250 (265)
134 PRK14268 phosphate ABC transpo 100.0 3.2E-46 6.9E-51 365.8 24.0 222 241-471 11-247 (258)
135 cd03264 ABC_drug_resistance_li 100.0 1.5E-46 3.2E-51 357.2 21.0 202 243-459 1-211 (211)
136 PRK13636 cbiO cobalt transport 100.0 2.8E-46 6E-51 370.8 23.6 214 242-467 5-232 (283)
137 cd03268 ABC_BcrA_bacitracin_re 100.0 1.9E-46 4.1E-51 355.7 21.5 202 243-459 1-208 (208)
138 PRK11831 putative ABC transpor 100.0 3.9E-46 8.4E-51 367.3 24.3 223 242-477 7-244 (269)
139 cd03265 ABC_DrrA DrrA is the A 100.0 3.3E-46 7.3E-51 357.1 23.0 208 243-464 1-219 (220)
140 PRK13632 cbiO cobalt transport 100.0 3.8E-46 8.3E-51 367.7 23.9 215 242-467 7-232 (271)
141 PRK14244 phosphate ABC transpo 100.0 2.7E-46 5.9E-51 364.9 22.4 221 243-472 6-243 (251)
142 cd03266 ABC_NatA_sodium_export 100.0 2E-46 4.4E-51 358.1 21.1 205 243-459 2-218 (218)
143 PRK11607 potG putrescine trans 100.0 4.4E-46 9.5E-51 381.3 24.9 217 241-472 18-245 (377)
144 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.8E-46 4E-51 358.9 20.7 204 243-462 1-219 (220)
145 PRK14239 phosphate transporter 100.0 5.6E-46 1.2E-50 362.9 24.4 219 242-469 5-239 (252)
146 PRK14237 phosphate transporter 100.0 8.7E-46 1.9E-50 364.4 26.0 219 241-468 19-253 (267)
147 PRK14240 phosphate transporter 100.0 8.3E-46 1.8E-50 361.3 25.6 219 242-469 3-237 (250)
148 PRK13644 cbiO cobalt transport 100.0 5E-46 1.1E-50 367.3 24.2 213 243-467 2-225 (274)
149 PRK13652 cbiO cobalt transport 100.0 5.7E-46 1.2E-50 367.5 24.3 214 242-467 3-228 (277)
150 PRK14249 phosphate ABC transpo 100.0 1.1E-45 2.4E-50 360.6 26.0 219 242-469 4-238 (251)
151 PRK11308 dppF dipeptide transp 100.0 8.6E-46 1.9E-50 373.4 26.0 224 242-476 5-254 (327)
152 PRK13648 cbiO cobalt transport 100.0 4.8E-46 1E-50 366.7 23.6 215 242-467 7-232 (269)
153 PRK09493 glnQ glutamine ABC tr 100.0 6.9E-46 1.5E-50 359.6 24.3 213 243-468 2-227 (240)
154 cd03290 ABCC_SUR1_N The SUR do 100.0 5E-46 1.1E-50 355.4 23.0 210 244-454 2-218 (218)
155 PRK14256 phosphate ABC transpo 100.0 1E-45 2.2E-50 361.0 25.5 222 241-471 3-241 (252)
156 cd03218 ABC_YhbG The ABC trans 100.0 3.6E-46 7.8E-51 359.7 22.0 211 243-466 1-222 (232)
157 TIGR02211 LolD_lipo_ex lipopro 100.0 3.4E-46 7.3E-51 357.3 21.6 203 243-456 2-220 (221)
158 PRK13640 cbiO cobalt transport 100.0 5.3E-46 1.1E-50 368.6 23.6 214 242-466 5-232 (282)
159 TIGR03411 urea_trans_UrtD urea 100.0 6.2E-46 1.3E-50 360.4 23.6 212 242-466 2-231 (242)
160 cd03247 ABCC_cytochrome_bd The 100.0 3.9E-46 8.4E-51 345.0 21.1 178 243-459 1-178 (178)
161 PRK11124 artP arginine transpo 100.0 6.4E-46 1.4E-50 360.3 23.6 213 242-467 2-231 (242)
162 PRK14238 phosphate transporter 100.0 1.1E-45 2.4E-50 364.3 25.4 224 240-472 22-261 (271)
163 PRK10575 iron-hydroxamate tran 100.0 5.3E-46 1.2E-50 365.6 23.0 212 242-466 11-237 (265)
164 PRK10619 histidine/lysine/argi 100.0 8.7E-46 1.9E-50 362.6 24.3 216 241-468 4-243 (257)
165 PRK11231 fecE iron-dicitrate t 100.0 5.8E-46 1.3E-50 363.4 23.0 219 243-476 3-235 (255)
166 PRK14261 phosphate ABC transpo 100.0 1.2E-45 2.5E-50 360.9 25.0 225 242-475 6-246 (253)
167 cd03301 ABC_MalK_N The N-termi 100.0 3.8E-46 8.1E-51 355.0 20.8 202 243-459 1-213 (213)
168 PRK14262 phosphate ABC transpo 100.0 9.5E-46 2.1E-50 360.8 24.2 224 242-474 3-242 (250)
169 PRK11264 putative amino-acid A 100.0 9.8E-46 2.1E-50 360.7 24.1 215 242-469 3-236 (250)
170 PRK13642 cbiO cobalt transport 100.0 9E-46 1.9E-50 366.1 24.0 215 242-467 4-230 (277)
171 PRK14236 phosphate transporter 100.0 1.5E-45 3.2E-50 363.7 25.4 219 241-468 24-258 (272)
172 PRK11022 dppD dipeptide transp 100.0 1.3E-45 2.8E-50 372.2 25.4 226 243-476 4-253 (326)
173 cd03225 ABC_cobalt_CbiO_domain 100.0 3.6E-46 7.7E-51 354.6 20.1 200 244-454 1-211 (211)
174 cd03292 ABC_FtsE_transporter F 100.0 4.7E-46 1E-50 354.5 20.8 201 243-455 1-214 (214)
175 PRK14243 phosphate transporter 100.0 1.9E-45 4.2E-50 361.3 25.7 219 242-469 10-251 (264)
176 TIGR02673 FtsE cell division A 100.0 4E-46 8.8E-51 355.0 20.1 200 243-454 2-214 (214)
177 PRK10070 glycine betaine trans 100.0 1.2E-45 2.7E-50 379.4 25.2 204 258-472 42-260 (400)
178 TIGR01288 nodI ATP-binding ABC 100.0 9.3E-46 2E-50 370.6 23.5 212 242-467 4-225 (303)
179 PRK14270 phosphate ABC transpo 100.0 2.1E-45 4.5E-50 358.6 25.3 218 242-468 4-237 (251)
180 PRK14253 phosphate ABC transpo 100.0 1.8E-45 3.9E-50 358.7 24.8 218 242-468 3-235 (249)
181 PRK13649 cbiO cobalt transport 100.0 9E-46 1.9E-50 366.9 23.0 215 243-467 3-235 (280)
182 TIGR03522 GldA_ABC_ATP gliding 100.0 9.6E-46 2.1E-50 370.0 23.2 211 243-467 3-222 (301)
183 PRK13536 nodulation factor exp 100.0 8.1E-46 1.8E-50 374.9 22.6 212 242-467 41-262 (340)
184 PRK13633 cobalt transporter AT 100.0 1.1E-45 2.4E-50 366.0 23.1 215 242-467 4-234 (280)
185 PRK10253 iron-enterobactin tra 100.0 1.4E-45 3.1E-50 362.6 23.6 213 241-466 6-233 (265)
186 PRK13548 hmuV hemin importer A 100.0 2.5E-45 5.3E-50 359.4 25.1 212 243-467 3-231 (258)
187 PRK14260 phosphate ABC transpo 100.0 1.9E-45 4.2E-50 360.5 24.4 221 241-470 6-247 (259)
188 PRK14275 phosphate ABC transpo 100.0 2.2E-45 4.7E-50 364.8 24.6 225 240-473 37-277 (286)
189 PRK10584 putative ABC transpor 100.0 1.7E-45 3.6E-50 354.2 23.0 206 242-458 6-227 (228)
190 PRK13641 cbiO cobalt transport 100.0 1.7E-45 3.7E-50 365.9 23.8 214 243-467 3-235 (287)
191 PRK11247 ssuB aliphatic sulfon 100.0 2.2E-45 4.8E-50 358.8 24.2 204 241-462 11-219 (257)
192 COG1131 CcmA ABC-type multidru 100.0 1.2E-45 2.7E-50 366.5 22.6 213 242-467 4-227 (293)
193 TIGR03410 urea_trans_UrtE urea 100.0 1.3E-45 2.9E-50 355.4 22.1 211 243-465 1-220 (230)
194 PRK14254 phosphate ABC transpo 100.0 3.9E-45 8.5E-50 362.6 25.9 219 240-467 37-270 (285)
195 PRK11614 livF leucine/isoleuci 100.0 1.9E-45 4.1E-50 355.9 23.0 213 242-467 5-227 (237)
196 PRK10895 lipopolysaccharide AB 100.0 2.6E-45 5.7E-50 355.8 24.1 213 242-467 3-227 (241)
197 cd03246 ABCC_Protease_Secretio 100.0 1.4E-45 3.1E-50 339.7 21.1 172 243-455 1-173 (173)
198 PRK14263 phosphate ABC transpo 100.0 3.7E-45 8.1E-50 358.6 25.4 223 242-473 8-252 (261)
199 PRK14271 phosphate ABC transpo 100.0 4.9E-45 1.1E-49 360.5 26.4 219 241-468 20-253 (276)
200 PRK14266 phosphate ABC transpo 100.0 3.2E-45 7E-50 357.1 24.7 222 242-472 3-240 (250)
201 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.3E-45 5.1E-50 349.0 22.8 200 243-459 1-211 (211)
202 PRK13645 cbiO cobalt transport 100.0 2.2E-45 4.8E-50 365.6 23.5 216 241-467 5-241 (289)
203 PRK09473 oppD oligopeptide tra 100.0 3.2E-45 7E-50 369.6 25.0 227 242-476 12-261 (330)
204 PRK13638 cbiO cobalt transport 100.0 2E-45 4.2E-50 362.8 22.9 212 243-467 2-226 (271)
205 TIGR03415 ABC_choXWV_ATP choli 100.0 1.7E-45 3.6E-50 375.9 22.9 207 258-475 38-263 (382)
206 PRK15093 antimicrobial peptide 100.0 3.5E-45 7.5E-50 370.1 25.0 227 242-476 3-258 (330)
207 cd03235 ABC_Metallic_Cations A 100.0 9.7E-46 2.1E-50 352.2 19.8 196 245-459 2-213 (213)
208 PRK14252 phosphate ABC transpo 100.0 5.3E-45 1.1E-49 358.6 25.3 220 240-468 14-251 (265)
209 PRK14272 phosphate ABC transpo 100.0 4.2E-45 9.1E-50 356.7 24.3 222 242-472 4-242 (252)
210 PRK11300 livG leucine/isoleuci 100.0 3.6E-45 7.9E-50 357.8 23.7 213 242-467 5-244 (255)
211 PRK14241 phosphate transporter 100.0 4.9E-45 1.1E-49 357.5 24.7 217 242-467 4-243 (258)
212 PRK10247 putative ABC transpor 100.0 2E-45 4.4E-50 352.9 21.5 209 242-462 7-223 (225)
213 TIGR03873 F420-0_ABC_ATP propo 100.0 3E-45 6.4E-50 358.6 23.0 211 243-466 2-226 (256)
214 PRK14265 phosphate ABC transpo 100.0 8.2E-45 1.8E-49 358.6 26.3 222 239-469 17-261 (274)
215 PRK13639 cbiO cobalt transport 100.0 2.9E-45 6.3E-50 362.1 22.9 213 243-467 2-227 (275)
216 PRK10771 thiQ thiamine transpo 100.0 5.4E-45 1.2E-49 351.6 24.2 208 243-467 2-220 (232)
217 PRK10908 cell division protein 100.0 3E-45 6.5E-50 351.0 22.2 203 243-457 2-217 (222)
218 cd03257 ABC_NikE_OppD_transpor 100.0 4.8E-45 1E-49 350.9 23.6 207 243-459 2-228 (228)
219 cd03300 ABC_PotA_N PotA is an 100.0 3.3E-45 7.2E-50 353.1 22.1 210 243-467 1-221 (232)
220 PRK14258 phosphate ABC transpo 100.0 7.7E-45 1.7E-49 356.6 24.6 221 241-470 6-249 (261)
221 cd03262 ABC_HisP_GlnQ_permease 100.0 2.3E-45 5E-50 349.5 20.4 200 243-455 1-213 (213)
222 TIGR00968 3a0106s01 sulfate AB 100.0 7.9E-45 1.7E-49 351.5 24.2 211 243-468 1-222 (237)
223 cd03269 ABC_putative_ATPase Th 100.0 2.3E-45 4.9E-50 348.9 19.8 200 243-459 1-210 (210)
224 TIGR01978 sufC FeS assembly AT 100.0 3.9E-45 8.4E-50 355.0 21.8 213 243-466 1-234 (243)
225 PRK15112 antimicrobial peptide 100.0 8.1E-45 1.8E-49 357.5 24.3 227 242-479 4-253 (267)
226 PRK11144 modC molybdate transp 100.0 6.8E-45 1.5E-49 370.9 24.3 211 243-469 2-221 (352)
227 PRK14255 phosphate ABC transpo 100.0 1.2E-44 2.6E-49 353.5 24.2 219 242-469 5-239 (252)
228 TIGR01188 drrA daunorubicin re 100.0 4.8E-45 1E-49 365.2 21.4 203 251-467 2-214 (302)
229 PRK14264 phosphate ABC transpo 100.0 2.2E-44 4.8E-49 360.7 26.1 219 240-467 43-290 (305)
230 COG4555 NatA ABC-type Na+ tran 100.0 1.4E-45 3E-50 332.0 15.6 212 243-467 2-223 (245)
231 PRK09984 phosphonate/organopho 100.0 1.6E-44 3.5E-49 354.6 24.6 221 242-478 4-251 (262)
232 PRK11701 phnK phosphonate C-P 100.0 1.5E-44 3.2E-49 354.0 24.2 222 242-475 6-250 (258)
233 PRK14246 phosphate ABC transpo 100.0 1.2E-44 2.6E-49 354.1 23.2 226 241-475 9-250 (257)
234 TIGR01277 thiQ thiamine ABC tr 100.0 1.1E-44 2.5E-49 344.8 22.3 201 243-460 1-212 (213)
235 cd03299 ABC_ModC_like Archeal 100.0 1.4E-44 2.9E-49 349.5 23.0 210 243-468 1-221 (235)
236 COG4175 ProV ABC-type proline/ 100.0 4.7E-45 1E-49 348.7 19.0 205 259-474 43-262 (386)
237 COG4178 ABC-type uncharacteriz 100.0 3.8E-42 8.3E-47 360.6 42.3 410 21-451 150-587 (604)
238 PRK13547 hmuV hemin importer A 100.0 3.3E-44 7.1E-49 353.4 24.2 211 243-466 2-244 (272)
239 COG0410 LivF ABC-type branched 100.0 1.9E-44 4.2E-49 333.3 20.9 215 242-468 3-228 (237)
240 PRK10418 nikD nickel transport 100.0 5.3E-44 1.1E-48 349.3 25.2 223 242-477 4-242 (254)
241 COG1123 ATPase components of v 100.0 2.4E-44 5.2E-49 372.7 23.6 229 240-479 278-532 (539)
242 cd03228 ABCC_MRP_Like The MRP 100.0 2.6E-44 5.6E-49 330.7 20.6 171 243-454 1-171 (171)
243 TIGR02142 modC_ABC molybdenum 100.0 2.9E-44 6.2E-49 366.7 23.0 211 247-472 4-227 (354)
244 PRK11248 tauB taurine transpor 100.0 3.5E-44 7.7E-49 350.5 22.7 201 243-461 2-215 (255)
245 TIGR03740 galliderm_ABC gallid 100.0 8.6E-44 1.9E-48 341.2 24.0 204 243-463 1-210 (223)
246 TIGR02982 heterocyst_DevA ABC 100.0 2.7E-44 6E-49 343.9 20.1 202 243-455 2-219 (220)
247 PRK10419 nikE nickel transport 100.0 1E-43 2.2E-48 349.8 24.3 225 242-477 3-251 (268)
248 COG0444 DppD ABC-type dipeptid 100.0 6.5E-44 1.4E-48 346.0 21.6 227 243-477 2-254 (316)
249 cd03229 ABC_Class3 This class 100.0 7.3E-44 1.6E-48 329.8 20.6 172 243-454 1-178 (178)
250 cd03230 ABC_DR_subfamily_A Thi 100.0 7.7E-44 1.7E-48 328.1 20.2 170 243-455 1-173 (173)
251 TIGR02323 CP_lyasePhnK phospho 100.0 3.2E-43 6.9E-48 343.6 25.2 222 242-475 3-247 (253)
252 COG0411 LivG ABC-type branched 100.0 1.6E-44 3.4E-49 336.4 14.8 213 243-468 5-241 (250)
253 PRK09544 znuC high-affinity zi 100.0 2.9E-43 6.2E-48 343.0 24.0 208 242-476 4-217 (251)
254 cd03233 ABC_PDR_domain1 The pl 100.0 1.5E-43 3.2E-48 334.3 20.7 189 243-459 4-202 (202)
255 PRK15056 manganese/iron transp 100.0 2.9E-43 6.3E-48 347.4 23.5 209 242-466 6-230 (272)
256 cd03297 ABC_ModC_molybdenum_tr 100.0 1.6E-43 3.4E-48 337.3 20.8 199 244-459 3-214 (214)
257 cd03234 ABCG_White The White s 100.0 2.5E-43 5.4E-48 338.7 21.0 203 243-459 4-226 (226)
258 cd03213 ABCG_EPDR ABCG transpo 100.0 1.9E-43 4.1E-48 331.4 19.5 182 242-459 3-194 (194)
259 CHL00131 ycf16 sulfate ABC tra 100.0 5.5E-43 1.2E-47 341.8 23.2 211 242-464 7-239 (252)
260 cd03217 ABC_FeS_Assembly ABC-t 100.0 5.4E-43 1.2E-47 330.0 22.0 185 243-465 1-192 (200)
261 PRK10261 glutathione transport 100.0 6.4E-43 1.4E-47 381.6 25.3 226 241-477 312-565 (623)
262 TIGR03608 L_ocin_972_ABC putat 100.0 2.5E-43 5.4E-48 333.8 18.5 193 245-450 1-206 (206)
263 cd03214 ABC_Iron-Siderophores_ 100.0 4.7E-43 1E-47 325.0 19.7 177 244-459 1-180 (180)
264 cd03232 ABC_PDR_domain2 The pl 100.0 3.5E-43 7.6E-48 329.2 18.9 181 242-459 3-192 (192)
265 cd03215 ABC_Carb_Monos_II This 100.0 4E-43 8.6E-48 326.0 19.0 172 242-455 4-182 (182)
266 PRK15439 autoinducer 2 ABC tra 100.0 9E-43 2E-47 372.8 24.5 212 242-466 11-229 (510)
267 cd03223 ABCD_peroxisomal_ALDP 100.0 6.5E-43 1.4E-47 319.7 20.1 164 243-454 1-164 (166)
268 COG4619 ABC-type uncharacteriz 100.0 2.4E-43 5.2E-48 308.5 16.0 191 256-456 15-213 (223)
269 PRK03695 vitamin B12-transport 100.0 1.2E-42 2.5E-47 338.6 22.1 205 244-466 2-222 (248)
270 COG1123 ATPase components of v 100.0 1.2E-42 2.6E-47 360.1 22.3 228 242-478 5-256 (539)
271 PRK09700 D-allose transporter 100.0 1.2E-42 2.5E-47 372.4 22.9 212 242-466 5-234 (510)
272 PRK13549 xylose transporter AT 100.0 1.3E-42 2.8E-47 371.6 23.2 211 242-465 5-231 (506)
273 TIGR02770 nickel_nikD nickel i 100.0 1.4E-42 3.1E-47 334.3 20.9 206 259-474 1-223 (230)
274 PRK10762 D-ribose transporter 100.0 1.6E-42 3.4E-47 370.5 23.2 211 242-465 4-229 (501)
275 COG1137 YhbG ABC-type (unclass 100.0 5.8E-44 1.3E-48 321.2 10.0 214 242-468 4-230 (243)
276 PRK09580 sufC cysteine desulfu 100.0 4.7E-42 1E-46 334.4 24.0 212 243-465 2-234 (248)
277 cd03231 ABC_CcmA_heme_exporter 100.0 3.2E-42 6.9E-47 325.0 21.7 194 243-450 1-198 (201)
278 COG4608 AppF ABC-type oligopep 100.0 2E-42 4.4E-47 328.9 19.8 196 242-477 4-210 (268)
279 cd03216 ABC_Carb_Monos_I This 100.0 5E-42 1.1E-46 312.9 21.6 159 243-457 1-162 (163)
280 PRK13538 cytochrome c biogenes 100.0 3.2E-42 6.8E-47 325.8 20.6 194 243-450 2-202 (204)
281 TIGR01184 ntrCD nitrate transp 100.0 2.2E-42 4.8E-47 332.9 19.8 190 260-465 1-203 (230)
282 cd03267 ABC_NatA_like Similar 100.0 2.6E-42 5.6E-47 333.7 20.2 191 257-459 34-236 (236)
283 PRK10938 putative molybdenum t 100.0 5.5E-42 1.2E-46 365.6 23.6 211 243-467 4-225 (490)
284 COG4172 ABC-type uncharacteriz 100.0 8.6E-42 1.9E-46 335.1 22.8 225 240-476 274-526 (534)
285 PRK13540 cytochrome c biogenes 100.0 6.4E-42 1.4E-46 322.8 20.3 193 243-449 2-198 (200)
286 PRK15134 microcin C ABC transp 100.0 6.1E-42 1.3E-46 368.3 22.7 219 242-472 275-521 (529)
287 COG4598 HisP ABC-type histidin 100.0 1.4E-42 2.9E-47 306.9 14.1 217 242-471 6-246 (256)
288 PRK15134 microcin C ABC transp 100.0 1.8E-41 3.9E-46 364.6 25.7 219 242-468 5-248 (529)
289 PRK10982 galactose/methyl gala 100.0 9.3E-42 2E-46 363.8 22.4 208 245-465 1-222 (491)
290 PRK11288 araG L-arabinose tran 100.0 1.5E-41 3.3E-46 363.0 23.7 207 242-461 4-224 (501)
291 PRK13543 cytochrome c biogenes 100.0 1.6E-41 3.4E-46 323.4 21.0 195 242-452 11-212 (214)
292 PRK10261 glutathione transport 100.0 1.5E-41 3.3E-46 370.8 23.0 224 241-472 11-264 (623)
293 TIGR02633 xylG D-xylose ABC tr 100.0 2.3E-41 5E-46 361.7 23.0 210 243-464 2-228 (500)
294 PRK13539 cytochrome c biogenes 100.0 3.4E-41 7.3E-46 319.5 21.4 193 243-452 3-200 (207)
295 TIGR01189 ccmA heme ABC export 100.0 2.6E-41 5.6E-46 318.1 20.3 192 243-449 1-197 (198)
296 COG4181 Predicted ABC-type tra 100.0 1.8E-41 3.8E-46 297.8 17.6 205 243-458 7-227 (228)
297 TIGR03269 met_CoM_red_A2 methy 100.0 2.1E-41 4.6E-46 363.5 21.9 214 242-466 279-517 (520)
298 COG1129 MglA ABC-type sugar tr 100.0 4.3E-41 9.3E-46 346.4 23.0 206 242-460 8-228 (500)
299 TIGR02324 CP_lyasePhnL phospho 100.0 3.6E-41 7.8E-46 323.2 20.8 198 243-450 2-222 (224)
300 COG4559 ABC-type hemin transpo 100.0 4.8E-41 1E-45 305.0 20.0 219 243-476 2-238 (259)
301 PRK13549 xylose transporter AT 100.0 4.3E-41 9.4E-46 359.8 20.7 213 242-465 259-493 (506)
302 PRK13546 teichoic acids export 100.0 1.7E-40 3.6E-45 325.5 22.9 202 242-467 4-233 (264)
303 TIGR03771 anch_rpt_ABC anchore 100.0 5.2E-41 1.1E-45 321.8 18.5 186 265-467 1-202 (223)
304 COG4161 ArtP ABC-type arginine 100.0 3.2E-41 6.8E-46 293.4 15.3 222 242-476 2-240 (242)
305 TIGR03269 met_CoM_red_A2 methy 100.0 5.3E-41 1.2E-45 360.4 20.5 211 243-466 1-258 (520)
306 PLN03211 ABC transporter G-25; 100.0 2E-40 4.4E-45 362.0 25.0 198 257-465 81-295 (659)
307 PRK09700 D-allose transporter 100.0 8.2E-41 1.8E-45 358.1 20.9 207 242-463 265-495 (510)
308 PRK10535 macrolide transporter 100.0 1.9E-40 4.1E-45 363.5 24.0 213 242-465 4-231 (648)
309 TIGR01257 rim_protein retinal- 100.0 1.6E-40 3.4E-45 389.6 24.2 216 241-468 927-1151(2272)
310 TIGR01166 cbiO cobalt transpor 100.0 7.4E-41 1.6E-45 312.9 16.9 172 258-440 6-189 (190)
311 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.6E-40 3.5E-45 318.6 18.7 192 243-459 23-224 (224)
312 PRK13541 cytochrome c biogenes 100.0 3E-40 6.6E-45 310.1 18.9 188 243-448 2-193 (195)
313 PRK13545 tagH teichoic acids e 100.0 9.8E-40 2.1E-44 339.7 23.6 203 241-467 20-233 (549)
314 TIGR02633 xylG D-xylose ABC tr 100.0 3.1E-40 6.7E-45 353.0 20.4 211 242-463 257-489 (500)
315 PRK15064 ABC transporter ATP-b 100.0 6.4E-40 1.4E-44 352.7 22.8 199 243-466 2-242 (530)
316 TIGR01257 rim_protein retinal- 100.0 6.7E-40 1.5E-44 384.3 24.4 215 241-467 1936-2160(2272)
317 PRK10762 D-ribose transporter 100.0 6.1E-40 1.3E-44 350.6 20.3 205 242-464 257-482 (501)
318 TIGR01187 potA spermidine/putr 100.0 8E-40 1.7E-44 330.3 19.3 185 275-472 1-196 (325)
319 COG4148 ModC ABC-type molybdat 100.0 6.2E-40 1.3E-44 308.7 16.6 196 262-468 16-220 (352)
320 COG4604 CeuD ABC-type enteroch 100.0 3.3E-40 7.1E-45 296.2 14.0 219 243-476 2-233 (252)
321 PRK11288 araG L-arabinose tran 100.0 1.3E-39 2.8E-44 348.1 21.1 207 242-465 257-484 (501)
322 TIGR00955 3a01204 The Eye Pigm 100.0 8.8E-40 1.9E-44 356.6 19.3 201 256-466 37-256 (617)
323 PRK15064 ABC transporter ATP-b 100.0 3.1E-39 6.7E-44 347.4 23.1 201 241-467 318-526 (530)
324 COG4525 TauB ABC-type taurine 100.0 8E-40 1.7E-44 293.1 15.3 204 243-462 4-220 (259)
325 COG3845 ABC-type uncharacteriz 100.0 2.9E-39 6.3E-44 326.4 20.9 206 242-460 4-223 (501)
326 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.4E-39 5.2E-44 349.6 20.8 210 242-466 4-248 (552)
327 PRK11819 putative ABC transpor 100.0 3.9E-39 8.5E-44 348.1 22.1 199 242-466 6-250 (556)
328 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.1E-39 1.1E-43 312.0 19.3 192 250-465 1-206 (246)
329 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 8.4E-39 1.8E-43 285.5 19.0 143 243-454 1-144 (144)
330 PRK15439 autoinducer 2 ABC tra 100.0 3.4E-39 7.3E-44 345.3 19.5 207 242-466 268-492 (510)
331 TIGR00956 3a01205 Pleiotropic 100.0 4.7E-39 1E-43 375.9 22.4 211 242-463 759-990 (1394)
332 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.6E-39 7.8E-44 314.4 15.7 200 246-459 4-220 (255)
333 PRK15177 Vi polysaccharide exp 100.0 1E-38 2.3E-43 303.6 18.5 184 259-466 2-192 (213)
334 PRK10982 galactose/methyl gala 100.0 1.5E-38 3.3E-43 339.1 20.0 208 241-462 249-476 (491)
335 PRK10938 putative molybdenum t 100.0 1.3E-38 2.9E-43 339.6 18.9 206 241-459 259-485 (490)
336 COG4152 ABC-type uncharacteriz 100.0 1.2E-38 2.5E-43 295.0 14.9 209 242-467 2-220 (300)
337 COG4172 ABC-type uncharacteriz 100.0 1.3E-37 2.9E-42 305.7 20.3 230 242-479 6-260 (534)
338 KOG0060 Long-chain acyl-CoA tr 100.0 5.5E-36 1.2E-40 305.9 31.8 416 23-453 186-642 (659)
339 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3E-37 6.6E-42 333.3 22.7 202 241-467 321-532 (552)
340 cd00267 ABC_ATPase ABC (ATP-bi 100.0 3.8E-37 8.1E-42 279.1 19.5 154 245-454 2-157 (157)
341 PRK11819 putative ABC transpor 100.0 3.9E-37 8.4E-42 332.6 23.1 201 241-467 323-534 (556)
342 cd03222 ABC_RNaseL_inhibitor T 100.0 1.6E-37 3.4E-42 285.6 16.6 151 246-462 4-159 (177)
343 PRK10636 putative ABC transpor 100.0 4.1E-37 8.9E-42 336.4 22.5 200 241-466 311-517 (638)
344 PLN03073 ABC transporter F fam 100.0 7.8E-37 1.7E-41 335.7 23.4 199 241-464 507-712 (718)
345 PRK11147 ABC transporter ATPas 100.0 7.5E-37 1.6E-41 334.8 22.5 201 241-466 318-528 (635)
346 COG4674 Uncharacterized ABC-ty 100.0 4.8E-37 1E-41 275.4 15.7 214 242-468 5-237 (249)
347 COG1101 PhnK ABC-type uncharac 100.0 3.9E-37 8.5E-42 280.1 15.3 203 256-460 18-232 (263)
348 COG1119 ModF ABC-type molybden 100.0 1.8E-36 4E-41 282.4 19.7 207 241-460 30-256 (257)
349 PRK13409 putative ATPase RIL; 100.0 1.1E-36 2.4E-41 328.8 20.4 192 241-460 339-536 (590)
350 PRK10636 putative ABC transpor 100.0 2.6E-36 5.6E-41 330.1 23.5 199 243-466 2-236 (638)
351 PLN03140 ABC transporter G fam 100.0 2.7E-36 5.8E-41 351.9 23.7 211 242-462 867-1106(1470)
352 COG4167 SapF ABC-type antimicr 100.0 1.7E-36 3.7E-41 269.0 16.8 227 243-479 5-253 (267)
353 cd03238 ABC_UvrA The excision 100.0 6.3E-36 1.4E-40 274.7 17.9 157 257-456 8-167 (176)
354 PRK11147 ABC transporter ATPas 100.0 3.2E-35 7E-40 321.9 23.3 198 242-467 3-244 (635)
355 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-35 2.6E-40 347.3 18.5 199 258-464 75-298 (1394)
356 COG4136 ABC-type uncharacteriz 100.0 2.1E-35 4.6E-40 254.1 14.9 194 242-450 2-207 (213)
357 COG1134 TagH ABC-type polysacc 100.0 7.1E-35 1.5E-39 272.1 19.6 189 257-467 40-237 (249)
358 COG0396 sufC Cysteine desulfur 100.0 1.5E-34 3.2E-39 266.6 21.0 214 242-466 3-233 (251)
359 PRK13409 putative ATPase RIL; 100.0 7.2E-36 1.6E-40 322.5 14.2 193 246-453 77-287 (590)
360 COG4107 PhnK ABC-type phosphon 100.0 1.9E-34 4.1E-39 254.0 16.7 224 242-477 6-252 (258)
361 PLN03140 ABC transporter G fam 100.0 4.4E-35 9.5E-40 341.8 16.2 198 258-465 179-426 (1470)
362 COG0488 Uup ATPase components 100.0 4.8E-34 1E-38 301.3 19.5 207 242-467 3-241 (530)
363 PLN03073 ABC transporter F fam 100.0 5.5E-34 1.2E-38 313.2 20.4 222 241-466 176-431 (718)
364 PF00005 ABC_tran: ABC transpo 100.0 1.6E-34 3.4E-39 255.5 11.1 136 260-408 1-137 (137)
365 KOG0061 Transporter, ABC super 100.0 7E-33 1.5E-37 299.9 21.9 216 240-465 23-259 (613)
366 COG4133 CcmA ABC-type transpor 100.0 2.6E-33 5.7E-38 250.6 13.3 187 243-443 3-195 (209)
367 COG4586 ABC-type uncharacteriz 100.0 3.3E-33 7.1E-38 262.8 13.6 205 258-475 38-254 (325)
368 COG0488 Uup ATPase components 100.0 6.2E-32 1.3E-36 285.3 24.4 203 240-467 319-526 (530)
369 cd03270 ABC_UvrA_I The excisio 100.0 9.1E-32 2E-36 258.2 17.2 188 257-459 8-226 (226)
370 KOG0064 Peroxisomal long-chain 100.0 2.4E-29 5.2E-34 254.1 33.8 413 22-450 220-681 (728)
371 cd03271 ABC_UvrA_II The excisi 100.0 6.4E-31 1.4E-35 255.6 15.9 193 259-461 10-261 (261)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 4.3E-31 9.2E-36 248.0 12.5 164 261-452 14-190 (197)
373 KOG0059 Lipid exporter ABCA1 a 100.0 1.6E-30 3.4E-35 293.0 17.2 215 241-467 563-788 (885)
374 COG4778 PhnL ABC-type phosphon 100.0 2.9E-30 6.2E-35 226.8 11.1 200 243-452 5-227 (235)
375 cd03272 ABC_SMC3_euk Eukaryoti 100.0 7.1E-30 1.5E-34 247.9 14.6 192 242-451 3-234 (243)
376 cd03279 ABC_sbcCD SbcCD and ot 100.0 2.1E-29 4.6E-34 239.8 13.2 191 242-455 5-211 (213)
377 COG4138 BtuD ABC-type cobalami 100.0 2.8E-29 6E-34 221.6 6.8 207 243-467 4-222 (248)
378 KOG0927 Predicted transporter 100.0 7.1E-29 1.5E-33 252.3 9.8 198 240-461 387-591 (614)
379 COG1129 MglA ABC-type sugar tr 100.0 2.4E-27 5.1E-32 244.8 18.2 213 241-463 262-487 (500)
380 cd03240 ABC_Rad50 The catalyti 99.9 9.6E-28 2.1E-32 226.6 13.3 164 263-453 16-198 (204)
381 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.2E-27 2.5E-32 233.5 13.9 181 270-451 25-242 (251)
382 cd03274 ABC_SMC4_euk Eukaryoti 99.9 6.8E-28 1.5E-32 228.8 10.4 181 242-452 5-204 (212)
383 PRK00349 uvrA excinuclease ABC 99.9 6.2E-27 1.3E-31 261.5 17.8 112 368-479 818-940 (943)
384 COG4170 SapD ABC-type antimicr 99.9 8.7E-27 1.9E-31 211.4 13.7 228 243-478 4-260 (330)
385 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.5E-26 5.4E-31 223.6 13.1 202 242-452 3-233 (247)
386 KOG0065 Pleiotropic drug resis 99.9 9.9E-27 2.2E-31 257.8 10.8 199 255-463 802-1018(1391)
387 COG3845 ABC-type uncharacteriz 99.9 2.1E-25 4.6E-30 226.0 19.3 219 238-463 253-489 (501)
388 PRK00635 excinuclease ABC subu 99.9 1.6E-25 3.4E-30 260.0 20.8 208 242-467 600-907 (1809)
389 KOG0062 ATPase component of AB 99.9 3.7E-25 8E-30 224.2 14.6 196 239-457 359-559 (582)
390 TIGR00630 uvra excinuclease AB 99.9 1E-24 2.3E-29 243.2 19.3 97 368-464 816-923 (924)
391 KOG0066 eIF2-interacting prote 99.9 3.3E-25 7.2E-30 219.6 13.3 198 241-462 585-787 (807)
392 KOG0927 Predicted transporter 99.9 2.1E-24 4.6E-29 219.8 16.2 222 241-467 74-310 (614)
393 KOG0062 ATPase component of AB 99.9 1.3E-24 2.9E-29 220.1 9.6 201 240-467 78-286 (582)
394 cd03276 ABC_SMC6_euk Eukaryoti 99.9 4.5E-24 9.8E-29 200.5 10.9 172 260-454 12-192 (198)
395 COG1245 Predicted ATPase, RNas 99.9 5.7E-23 1.2E-27 205.4 14.4 177 250-452 343-531 (591)
396 KOG2355 Predicted ABC-type tra 99.9 6.9E-22 1.5E-26 179.1 15.5 210 241-466 12-237 (291)
397 cd03239 ABC_SMC_head The struc 99.9 4.4E-22 9.4E-27 183.8 12.9 85 362-452 83-172 (178)
398 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.4E-21 3.1E-26 184.1 10.8 146 259-459 16-172 (200)
399 cd03241 ABC_RecN RecN ATPase i 99.9 4.5E-21 9.7E-26 189.6 13.8 76 379-454 170-249 (276)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.9 3.8E-21 8.3E-26 182.6 12.2 180 261-454 15-211 (213)
401 COG0178 UvrA Excinuclease ATPa 99.8 1.3E-20 2.9E-25 200.0 16.4 107 372-478 815-931 (935)
402 PRK00635 excinuclease ABC subu 99.8 2E-20 4.3E-25 217.8 18.8 216 259-474 1505-1804(1809)
403 KOG0065 Pleiotropic drug resis 99.8 7.8E-21 1.7E-25 211.4 13.5 199 258-466 129-351 (1391)
404 cd01128 rho_factor Transcripti 99.8 1.8E-20 3.8E-25 181.3 10.1 194 265-476 11-226 (249)
405 COG2401 ABC-type ATPase fused 99.8 1.1E-19 2.4E-24 180.0 11.8 179 258-457 397-589 (593)
406 cd03227 ABC_Class2 ABC-type Cl 99.8 8.8E-20 1.9E-24 166.1 10.2 135 264-452 15-155 (162)
407 COG1245 Predicted ATPase, RNas 99.8 1.3E-19 2.7E-24 181.6 10.9 189 247-452 79-288 (591)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.8 2E-19 4.3E-24 171.9 9.9 151 258-460 18-175 (222)
409 cd03242 ABC_RecF RecF is a rec 99.8 1.8E-18 3.9E-23 170.5 12.5 74 379-455 183-269 (270)
410 cd03243 ABC_MutS_homologs The 99.8 3.4E-18 7.5E-23 161.3 10.3 154 262-464 21-177 (202)
411 cd03283 ABC_MutS-like MutS-lik 99.8 2.4E-18 5.3E-23 161.7 9.1 140 258-450 15-163 (199)
412 PF00664 ABC_membrane: ABC tra 99.7 4.6E-16 9.9E-21 150.4 23.7 192 1-192 80-273 (275)
413 KOG0066 eIF2-interacting prote 99.7 1.4E-17 3E-22 165.8 8.1 209 242-464 264-497 (807)
414 TIGR00630 uvra excinuclease AB 99.7 5E-17 1.1E-21 182.0 11.3 100 368-467 475-584 (924)
415 PRK00349 uvrA excinuclease ABC 99.7 5.4E-17 1.2E-21 182.1 10.6 95 373-467 483-586 (943)
416 TIGR02858 spore_III_AA stage I 99.7 2.3E-16 4.9E-21 154.4 13.1 142 271-465 112-268 (270)
417 cd00820 PEPCK_HprK Phosphoenol 99.7 3.9E-17 8.5E-22 136.3 5.7 75 258-340 3-77 (107)
418 KOG0063 RNAse L inhibitor, ABC 99.7 3E-16 6.5E-21 156.3 11.2 192 250-466 343-548 (592)
419 cd03282 ABC_MSH4_euk MutS4 hom 99.6 8.9E-16 1.9E-20 144.7 10.8 139 257-444 16-157 (204)
420 cd03284 ABC_MutS1 MutS1 homolo 99.6 3.7E-16 8E-21 148.8 7.7 154 258-464 19-179 (216)
421 TIGR00606 rad50 rad50. This fa 99.6 1.6E-15 3.5E-20 178.6 13.4 118 329-450 1153-1288(1311)
422 PRK00064 recF recombination pr 99.6 7E-15 1.5E-19 150.7 14.7 76 378-455 272-359 (361)
423 PF02463 SMC_N: RecF/RecN/SMC 99.6 5.4E-15 1.2E-19 141.3 11.7 169 261-451 16-212 (220)
424 PHA02562 46 endonuclease subun 99.5 1.2E-14 2.6E-19 158.1 8.4 107 347-455 431-555 (562)
425 cd03281 ABC_MSH5_euk MutS5 hom 99.5 1.2E-13 2.7E-18 131.2 10.9 134 259-444 18-160 (213)
426 smart00534 MUTSac ATPase domai 99.5 4E-14 8.6E-19 131.7 5.7 77 377-454 59-138 (185)
427 PRK07721 fliI flagellum-specif 99.5 1.1E-12 2.3E-17 136.6 15.7 174 258-463 147-340 (438)
428 TIGR01069 mutS2 MutS2 family p 99.4 2.3E-13 5.1E-18 151.0 8.7 150 242-442 295-449 (771)
429 TIGR00634 recN DNA repair prot 99.4 6E-13 1.3E-17 144.2 9.1 77 378-454 439-519 (563)
430 PTZ00132 GTP-binding nuclear p 99.4 2.5E-13 5.4E-18 129.3 5.1 43 383-425 156-203 (215)
431 PRK14079 recF recombination pr 99.4 1E-11 2.2E-16 126.7 15.1 77 379-460 263-348 (349)
432 PRK10869 recombination and rep 99.4 2.1E-12 4.5E-17 139.1 9.8 76 379-454 430-509 (553)
433 cd03287 ABC_MSH3_euk MutS3 hom 99.3 6.4E-12 1.4E-16 119.8 9.8 136 257-443 18-159 (222)
434 PRK13695 putative NTPase; Prov 99.3 3.3E-12 7.1E-17 117.6 6.9 78 378-458 77-156 (174)
435 PRK08533 flagellar accessory p 99.3 4.4E-11 9.6E-16 115.0 14.1 156 243-451 8-184 (230)
436 COG0178 UvrA Excinuclease ATPa 99.3 1.7E-11 3.8E-16 131.3 11.6 104 374-477 476-588 (935)
437 KOG0063 RNAse L inhibitor, ABC 99.3 3.4E-12 7.3E-17 127.7 5.4 166 267-452 97-288 (592)
438 TIGR02788 VirB11 P-type DNA tr 99.3 1.1E-11 2.5E-16 124.4 8.7 144 263-466 137-281 (308)
439 cd01124 KaiC KaiC is a circadi 99.2 9.6E-11 2.1E-15 108.7 11.4 80 373-452 65-164 (187)
440 PRK01156 chromosome segregatio 99.2 3.5E-11 7.5E-16 137.8 10.2 76 376-451 798-883 (895)
441 PRK00409 recombination and DNA 99.2 1.7E-11 3.7E-16 136.6 7.4 79 376-456 387-468 (782)
442 PRK06793 fliI flagellum-specif 99.2 1.1E-10 2.3E-15 120.8 11.5 168 242-460 130-305 (432)
443 TIGR03238 dnd_assoc_3 dnd syst 99.2 2E-11 4.3E-16 126.0 4.8 67 258-327 20-87 (504)
444 TIGR00618 sbcc exonuclease Sbc 99.2 7.3E-11 1.6E-15 136.9 9.9 77 377-453 948-1036(1042)
445 PRK03918 chromosome segregatio 99.1 8.6E-11 1.9E-15 134.5 9.3 75 378-452 787-868 (880)
446 TIGR02168 SMC_prok_B chromosom 99.1 1.4E-10 3E-15 136.5 8.0 75 376-450 1086-1164(1179)
447 cd01120 RecA-like_NTPases RecA 99.1 8.9E-10 1.9E-14 99.0 10.6 129 272-441 1-140 (165)
448 PF13304 AAA_21: AAA domain; P 99.1 3.1E-10 6.6E-15 109.1 7.9 63 379-441 236-302 (303)
449 cd03286 ABC_MSH6_euk MutS6 hom 99.1 1.2E-09 2.6E-14 104.0 11.5 136 258-443 18-158 (218)
450 PRK13830 conjugal transfer pro 99.1 1.2E-09 2.5E-14 123.3 13.1 67 395-461 650-728 (818)
451 COG3910 Predicted ATPase [Gene 99.0 2.3E-09 5E-14 96.9 11.8 82 380-463 130-213 (233)
452 cd01131 PilT Pilus retraction 99.0 5E-10 1.1E-14 105.3 7.2 118 272-450 3-121 (198)
453 TIGR02169 SMC_prok_A chromosom 99.0 5.5E-10 1.2E-14 131.5 8.8 85 368-452 1057-1151(1164)
454 smart00382 AAA ATPases associa 99.0 1.3E-08 2.9E-13 88.1 14.8 117 269-437 1-125 (148)
455 PRK10246 exonuclease subunit S 98.9 2.2E-09 4.7E-14 124.2 9.8 77 376-452 946-1032(1047)
456 PRK06067 flagellar accessory p 98.9 1.4E-08 3E-13 98.0 13.3 74 379-452 100-187 (234)
457 PRK02224 chromosome segregatio 98.9 3.7E-09 7.9E-14 121.2 8.6 77 378-454 780-870 (880)
458 PRK00300 gmk guanylate kinase; 98.9 6.4E-09 1.4E-13 98.1 8.5 80 268-355 3-94 (205)
459 TIGR00767 rho transcription te 98.9 9.2E-09 2E-13 104.8 9.8 81 207-296 103-194 (415)
460 PRK06002 fliI flagellum-specif 98.8 1.1E-08 2.4E-13 106.1 7.5 86 240-327 137-229 (450)
461 PRK01889 GTPase RsgA; Reviewed 98.7 4E-08 8.7E-13 100.6 7.8 98 260-360 185-287 (356)
462 TIGR02655 circ_KaiC circadian 98.7 4.1E-09 8.9E-14 112.4 0.5 156 266-451 17-190 (484)
463 PRK13891 conjugal transfer pro 98.7 3.6E-07 7.8E-12 103.7 15.3 54 390-443 680-735 (852)
464 TIGR01420 pilT_fam pilus retra 98.6 9.3E-08 2E-12 97.6 8.8 120 267-447 119-239 (343)
465 TIGR00611 recf recF protein. A 98.6 4.8E-08 1E-12 100.3 6.6 62 379-442 275-345 (365)
466 PRK07196 fliI flagellum-specif 98.6 2.9E-08 6.3E-13 103.0 4.1 81 258-339 144-234 (434)
467 cd01125 repA Hexameric Replica 98.6 9.3E-08 2E-12 92.6 7.3 44 394-438 108-159 (239)
468 PF09818 ABC_ATPase: Predicted 98.6 3.9E-07 8.4E-12 93.2 11.8 171 248-455 227-416 (448)
469 cd01130 VirB11-like_ATPase Typ 98.6 4.8E-08 1E-12 90.9 4.5 66 259-327 14-79 (186)
470 cd02023 UMPK Uridine monophosp 98.5 7E-08 1.5E-12 90.6 4.3 107 272-413 1-114 (198)
471 PRK06995 flhF flagellar biosyn 98.5 4.8E-08 1E-12 102.7 3.0 61 261-340 247-307 (484)
472 TIGR02524 dot_icm_DotB Dot/Icm 98.5 1.4E-07 2.9E-12 96.5 6.2 89 268-357 132-235 (358)
473 PRK10078 ribose 1,5-bisphospho 98.5 1.6E-07 3.6E-12 87.3 5.4 56 269-327 1-56 (186)
474 PRK08149 ATP synthase SpaL; Va 98.4 2.5E-07 5.4E-12 95.9 5.3 68 258-326 140-214 (428)
475 COG0419 SbcC ATPase involved i 98.4 6.8E-07 1.5E-11 102.6 9.1 78 376-453 812-898 (908)
476 TIGR01026 fliI_yscN ATPase Fli 98.4 2E-06 4.4E-11 89.9 10.4 179 258-463 152-345 (440)
477 PRK13898 type IV secretion sys 98.4 7.1E-06 1.5E-10 93.0 15.5 49 393-441 638-688 (800)
478 TIGR02680 conserved hypothetic 98.3 7.8E-07 1.7E-11 105.4 7.7 63 376-440 1244-1318(1353)
479 TIGR03881 KaiC_arch_4 KaiC dom 98.3 5.5E-07 1.2E-11 86.5 5.0 40 266-305 16-56 (229)
480 PLN03210 Resistant to P. syrin 98.3 1.7E-06 3.7E-11 101.7 9.6 43 263-305 200-243 (1153)
481 PRK05399 DNA mismatch repair p 98.3 3.6E-06 7.9E-11 95.4 11.6 65 381-446 668-738 (854)
482 PRK09825 idnK D-gluconate kina 98.3 6.2E-07 1.4E-11 82.7 4.4 53 269-327 2-55 (176)
483 TIGR02322 phosphon_PhnN phosph 98.3 1.2E-06 2.5E-11 80.8 6.3 62 270-332 1-78 (179)
484 PRK10733 hflB ATP-dependent me 98.3 8.9E-08 1.9E-12 105.4 -1.8 28 266-295 183-210 (644)
485 TIGR00101 ureG urease accessor 98.3 1.1E-06 2.4E-11 82.7 5.5 106 272-384 3-108 (199)
486 TIGR00235 udk uridine kinase. 98.3 4.2E-07 9.2E-12 86.0 2.6 29 268-296 4-32 (207)
487 PLN02796 D-glycerate 3-kinase 98.3 3.4E-07 7.4E-12 92.0 2.1 61 258-318 80-151 (347)
488 PRK06315 type III secretion sy 98.3 5.8E-07 1.3E-11 93.6 3.8 100 259-359 154-277 (442)
489 COG3044 Predicted ATPase of th 98.3 6.3E-06 1.4E-10 82.9 10.7 158 264-456 237-412 (554)
490 TIGR02903 spore_lon_C ATP-depe 98.3 3.7E-06 8.1E-11 92.1 10.0 110 269-424 174-291 (615)
491 TIGR00152 dephospho-CoA kinase 98.2 1.5E-06 3.3E-11 80.9 6.0 71 382-454 60-134 (188)
492 cd00009 AAA The AAA+ (ATPases 98.2 6E-06 1.3E-10 72.0 8.9 54 385-439 72-131 (151)
493 COG3950 Predicted ATP-binding 98.2 6.7E-06 1.5E-10 81.1 8.9 86 366-451 244-351 (440)
494 PRK14722 flhF flagellar biosyn 98.2 6.5E-06 1.4E-10 84.2 9.0 36 259-294 126-161 (374)
495 TIGR03263 guanyl_kin guanylate 98.2 1.8E-06 4E-11 79.5 4.6 26 270-295 1-26 (180)
496 COG1195 RecF Recombinational D 98.2 2.2E-05 4.9E-10 79.3 12.5 74 380-456 276-362 (363)
497 PRK00454 engB GTP-binding prot 98.1 3.8E-06 8.3E-11 78.2 6.0 50 374-427 142-194 (196)
498 PRK09862 putative ATP-dependen 98.1 2.4E-06 5.2E-11 90.7 5.1 63 245-309 187-249 (506)
499 PRK07594 type III secretion sy 98.1 2.9E-06 6.2E-11 88.2 5.3 65 242-308 129-193 (433)
500 cd01123 Rad51_DMC1_radA Rad51_ 98.1 1.4E-05 3.1E-10 76.9 9.5 78 267-350 16-100 (235)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-96 Score=765.73 Aligned_cols=481 Identities=25% Similarity=0.370 Sum_probs=423.4
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+|++++++++.|||++++||+++|+++|+..+...+...+...+.++++.++.+++|+.+||.++++.+...|+++...+
T Consensus 227 lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~ 306 (716)
T KOG0058|consen 227 LFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAK 306 (716)
T ss_pred HHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999988888888888888
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
+|.+..++..+..+++.++.++...|.++++++||+|+.|++..+++.+..+...+...+.+...........+...+..
T Consensus 307 ~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~ 386 (716)
T KOG0058|consen 307 IYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAV 386 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHH
Confidence 99999999999999999999999999999999999999998777777776666555554444333333333334444444
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
...++++ ..+..|.++++.+..++.|...+...+..+...+..+.++..+.+|++|+++.++.-+.. .. .. +...
T Consensus 387 ~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~-~~-p~~~ 462 (716)
T KOG0058|consen 387 LSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT--GT-LA-PDHL 462 (716)
T ss_pred HHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--Cc-cc-cccc
Confidence 4333332 345678899888888888888888877778888889999999999999999876543211 11 01 1124
Q ss_pred CccEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 240 QGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
.+.|+|+||+|+||.. +.++|+|+||+|+|||++|+|||||+||||++++|.++|+|++|+|.+||+||++++...||+
T Consensus 463 ~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~ 542 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR 542 (716)
T ss_pred cceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHH
Confidence 5789999999999854 345999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEcCCCccCccchhhhcCCC-CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
+||+|.|||.||++||+|||.|+ ++.++|++++|++.|+.++||.++|+||||.|||+|.+|||||||||||||||++|
T Consensus 543 ~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~ 622 (716)
T KOG0058|consen 543 KIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRN 622 (716)
T ss_pred HeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcC
Confidence 99999999999999999999998 47889999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
|.||||||+|||||.++|..+++++.+..+++|||+|+|||+++++||+|+|+++|+|+|.|+|+||++++++.|+++++
T Consensus 623 P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~ 702 (716)
T KOG0058|consen 623 PRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQ 702 (716)
T ss_pred CCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHH
Confidence 99999999999999999999999999988999999999999999999999999999999999999999997789999999
Q ss_pred HHhcCCCC
Q 011281 478 EYTQRSNS 485 (489)
Q Consensus 478 ~~~~~~~~ 485 (489)
++......
T Consensus 703 ~q~~~~~~ 710 (716)
T KOG0058|consen 703 RQLDSGEP 710 (716)
T ss_pred HhcccCCC
Confidence 87765543
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=9.4e-91 Score=752.97 Aligned_cols=473 Identities=27% Similarity=0.375 Sum_probs=424.3
Q ss_pred hhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011281 2 HFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQY 81 (489)
Q Consensus 2 ~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~ 81 (489)
++|++++|++||+++++|++++|+ +|.+++++++...+...+..++++++.+++|+.++|.++++++..+++.+.+...
T Consensus 234 ~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~ 312 (709)
T COG2274 234 FRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLI 312 (709)
T ss_pred HHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999 5899999999888888888888889999999999999998877666666665566
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 82 YLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFV 161 (489)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (489)
+.+..++..++..+..+..++.+.|++.|+++||+.+.|.++..++++...++.+..++......+.+....++..+..+
T Consensus 313 ~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v 392 (709)
T COG2274 313 FQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSV 392 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888888889999999999999999999999999999999888888777777666666666666666666666
Q ss_pred HHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCC
Q 011281 162 FSLFFII-SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQ 240 (489)
Q Consensus 162 ~~~~~~~-~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (489)
+.+|++. .+..|.++.+.+.++.++...+..++..++..+..++....+.+|+.++++.++|.+... .....++..
T Consensus 393 ~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~---~~~~~~~~~ 469 (709)
T COG2274 393 LILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK---TLIHLPKLQ 469 (709)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc---ccccccccC
Confidence 6666653 466788888888888888888999998899999999999999999999999887643211 111222345
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
++|+++||+|+|+++.+++|+|+||+|++||++||||+||||||||+|+|+|+|+|++|+|.+||+|+.+++..++|++|
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 78999999999998877899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC
Q 011281 321 SIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 399 (489)
Q Consensus 321 ~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ 399 (489)
+||+||+++|+|||+|||++++ +.++|++.+||+.+|+++||.++|.||||+|||+|.+|||||||||+|||||+++|+
T Consensus 550 g~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ 629 (709)
T COG2274 550 GYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPK 629 (709)
T ss_pred eEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999974 677899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHH
Q 011281 400 VLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 479 (489)
Q Consensus 400 illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~~ 479 (489)
||||||||||||+++|+.|.+.|.+...++|+|+||||++++++||||+||++|+|+++|+|+||++. ++.|++++.++
T Consensus 630 ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 630 ILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred EEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 78999998754
No 3
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.3e-88 Score=758.00 Aligned_cols=481 Identities=50% Similarity=0.858 Sum_probs=451.9
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
|++++++.||+||+.+++|+|+||+++|++.+|..++..+..++...+.++++++++....|+.+++++|+.++++++++
T Consensus 897 ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~ 976 (1381)
T KOG0054|consen 897 LLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQR 976 (1381)
T ss_pred HHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
+|.+..++..+.....+++..+++.|++.|+.+||+|+.+++|.+++.+..+.+.+..+.......|+...++++..+++
T Consensus 977 ~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v 1056 (1381)
T KOG0054|consen 977 YYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVV 1056 (1381)
T ss_pred HHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888889999999999988877
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCC
Q 011281 161 VFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQ 240 (489)
Q Consensus 161 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (489)
.++.++......+..+++.+|..++|...++..+++.++..+++++.++|++|+.++.+.++|.+...+..+++..||..
T Consensus 1057 ~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~ 1136 (1381)
T KOG0054|consen 1057 LIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSK 1136 (1381)
T ss_pred HHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCC
Confidence 76666554444433678899999999999999999999999999999999999999999887744444444466789999
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
+.|+|+|++.+|.++.|.||+||||+|+|||++||||++|||||||+++|.|+.+|.+|+|.|||+|+.++.+.++|+++
T Consensus 1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred CeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcC
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCE
Q 011281 321 SIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 400 (489)
Q Consensus 321 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~i 400 (489)
+++||||.||+||+|.|+++.++++|+++|+|+++|+|.+++.++|.|||+.|.|+|.|+|-||||.+||||||+|+++|
T Consensus 1217 sIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skI 1296 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKI 1296 (1381)
T ss_pred eeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHh
Q 011281 401 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 480 (489)
Q Consensus 401 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~~~ 480 (489)
|+||||||++|++|...|++.|++.++++|||.|+||++++.+||||+|||+|+|+|.|+|++|++++++.|++++.+..
T Consensus 1297 LvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~ 1376 (1381)
T KOG0054|consen 1297 LVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAA 1376 (1381)
T ss_pred EEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899987777654
Q ss_pred c
Q 011281 481 Q 481 (489)
Q Consensus 481 ~ 481 (489)
.
T Consensus 1377 ~ 1377 (1381)
T KOG0054|consen 1377 L 1377 (1381)
T ss_pred H
Confidence 3
No 4
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-87 Score=737.14 Aligned_cols=476 Identities=22% Similarity=0.314 Sum_probs=391.0
Q ss_pred ChhHHhcCCcccccc--cCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDA--TPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWY 78 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~--~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~ 78 (489)
||+++++++..|||+ ++ |.+.+|+.+|...++..+...+..++.++..+++.+++.+.++|.++++.+...|++...
T Consensus 746 ~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~ 824 (1228)
T KOG0055|consen 746 MFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILS 824 (1228)
T ss_pred HHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999986 45 999999999999999999999999999999999999999999999998877666665544
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 011281 79 QQYYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSI 158 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (489)
...+.+.+...........++..+...|++++++||++|+.|+++.+.+.+..+...+...+............+.+...
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~ 904 (1228)
T KOG0055|consen 825 GYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFF 904 (1228)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555566777899999999999999999999999998888777665555544333333333333344
Q ss_pred HHHHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCC
Q 011281 159 IFVFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSW 237 (489)
Q Consensus 159 ~~~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~ 237 (489)
...+++++. ..+..|.+++..+...+.....-.............+.++..|+.+++++++.++..+.. .+......
T Consensus 905 ~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~--~~~~~~~~ 982 (1228)
T KOG0055|consen 905 VYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPD--STSGGKLP 982 (1228)
T ss_pred HHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCC--CCCCCccc
Confidence 444444443 234567776654433222211111112223344556778889999999999876532211 11111112
Q ss_pred CCCccEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh
Q 011281 238 PSQGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL 316 (489)
Q Consensus 238 ~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 316 (489)
+..+.|+++||+|+||.. +.++|+|+||++++|+.+||||||||||||++.+|.|+|+|++|.|.+||+|+++++++++
T Consensus 983 ~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 983 NVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred cceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHH
Confidence 345789999999999842 2358999999999999999999999999999999999999999999999999999999999
Q ss_pred hccceEEcCCCccCccchhhhcCCC-CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc
Q 011281 317 RSRLSIIPQDPTMFEGSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 395 (489)
Q Consensus 317 r~~i~~v~Q~~~lf~~ti~~Ni~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall 395 (489)
|++|++|+|+|.||++||||||.++ ++.+.+|+.+|++.+++++||.+||+||||.|||+|.+||||||||||||||++
T Consensus 1063 R~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAil 1142 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAIL 1142 (1228)
T ss_pred HHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHH
Confidence 9999999999999999999999998 457999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 011281 396 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475 (489)
Q Consensus 396 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l 475 (489)
|||+||||||+|||||.++|+.++++|.+...++|+|+|+|||+++++||.|.|+++|+|+|+|+|+||+++ ++.|++|
T Consensus 1143 RnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~-~G~Y~~L 1221 (1228)
T KOG0055|consen 1143 RNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAK-RGIYFRL 1221 (1228)
T ss_pred cCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhC-CCchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 8899999
Q ss_pred HHHHh
Q 011281 476 VAEYT 480 (489)
Q Consensus 476 ~~~~~ 480 (489)
++.+.
T Consensus 1222 v~~q~ 1226 (1228)
T KOG0055|consen 1222 VQLQS 1226 (1228)
T ss_pred hhhcc
Confidence 87553
No 5
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.5e-86 Score=721.73 Aligned_cols=475 Identities=17% Similarity=0.253 Sum_probs=386.5
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+++|++++|+.+|+++++|++++|+++|++.++.++...+..++.+++.+++.+++++.++|.+++++++.+++.+++..
T Consensus 102 ~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~ 181 (588)
T PRK11174 102 VLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMA 181 (588)
T ss_pred HHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999888888888888888888888999999998876655555555556
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.++.++..++.++..+++.+.+.|.++|+++||+|+.++++.+++.+..+++.+...+.............++..+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (588)
T PRK11174 182 LVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISI 261 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777888999999999999999999999999988888777776655444333322222222222222222
Q ss_pred HHHHHHHHHhcCCcccHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccC
Q 011281 161 VFSLFFIISVPEGVVDPAI---------AGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEAS 231 (489)
Q Consensus 161 ~~~~~~~~~~~~g~i~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~ 231 (489)
.+.+++......|.++.+. ....+.+...+..++..+...+..++.+..+.+|+.++++.+++.+. ..
T Consensus 262 ~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~~- 338 (588)
T PRK11174 262 ALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ--QG- 338 (588)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC--CC-
Confidence 1111111111123333221 11112333344555666666777889999999999999976543211 01
Q ss_pred CCCCCCCCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 011281 232 RPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI 311 (489)
Q Consensus 232 ~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~ 311 (489)
......+..+.|+++||+|.|+++ +++|+|+||+++|||++|||||||||||||+++|+|+| |++|+|.+||+|++++
T Consensus 339 ~~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~ 416 (588)
T PRK11174 339 EKELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELREL 416 (588)
T ss_pred ccccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccC
Confidence 000011123469999999877654 45999999999999999999999999999999999999 9999999999999999
Q ss_pred ChHHhhccceEEcCCCccCccchhhhcCCC-CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 312 GLHDLRSRLSIIPQDPTMFEGSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 312 ~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
+.+++|++|+||||+|++|++||+|||+++ +++++++++++++.|++++++.++|+||||.|||+|.+|||||||||+|
T Consensus 417 ~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRial 496 (588)
T PRK11174 417 DPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLAL 496 (588)
T ss_pred CHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999998 4689999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCC
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSS 470 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~ 470 (489)
|||++++|+|||||||||+||+++++.|++.|.+..+++|+|+||||+++++.||+|++|++|+|++.|+|+||+++ ++
T Consensus 497 ARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~-~~ 575 (588)
T PRK11174 497 ARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA-GG 575 (588)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc-ch
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999987 67
Q ss_pred hHHHHHHHHhc
Q 011281 471 SFAQLVAEYTQ 481 (489)
Q Consensus 471 ~~~~l~~~~~~ 481 (489)
.|++++..+.+
T Consensus 576 ~y~~l~~~q~~ 586 (588)
T PRK11174 576 LFATLLAHRQE 586 (588)
T ss_pred HHHHHHHHhhc
Confidence 89999987654
No 6
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=8.8e-85 Score=706.37 Aligned_cols=473 Identities=28% Similarity=0.413 Sum_probs=393.9
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
++++++++|+++|+++++|++++|+++|++.++..+.+....+..+++.+++.+++++..+|.++++.+...+++.+...
T Consensus 91 ~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 170 (567)
T COG1132 91 LFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLS 170 (567)
T ss_pred HHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999998887755555567888888899999999998876655555555555
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.++.++..+..+...+++.+.+.|.++|++++|+|+.+....+++.+..+...+..................+..+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (567)
T COG1132 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGT 250 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555677777777888999999999999999999999998766665555444433332222222222222233333322
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
...+++. ..+..+.++.+.+..++.+...+..++..+......++.+..+.+|+.++++.+++.. +.... ....
T Consensus 251 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~---~~~~~--~~~~ 325 (567)
T COG1132 251 VLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVE---DPPDP--LKDT 325 (567)
T ss_pred HHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc---CCCCC--CCCC
Confidence 2222222 2344566777777777777777777777777888889999999999999998754321 11111 1123
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.++|+|+||+|+|+++ +++|+|+||++++||++||||||||||||++++|+|+|+|++|+|.+||+|+++++.+++|++
T Consensus 326 ~~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~ 404 (567)
T COG1132 326 IGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKR 404 (567)
T ss_pred CCeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHh
Confidence 4569999999999864 359999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
|++|||+|++|++||+|||.+++ +++++++++|++.+++++++.++|+||||.|||+|.+|||||||||+||||+++||
T Consensus 405 I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 405 IGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred ccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999986 48999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
||+|||||||+||+++|+.+++.+.+..+++|+|+||||++++++||+|+||++|+|+|.|+|+||+++ ++.|++++..
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~ 563 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQA 563 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHH
Confidence 999999999999999999999999987788999999999999999999999999999999999999998 8999999987
Q ss_pred Hh
Q 011281 479 YT 480 (489)
Q Consensus 479 ~~ 480 (489)
+.
T Consensus 564 ~~ 565 (567)
T COG1132 564 QG 565 (567)
T ss_pred hh
Confidence 65
No 7
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.2e-84 Score=763.06 Aligned_cols=479 Identities=39% Similarity=0.678 Sum_probs=399.6
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
|+++++++|++||+++++|++++|+++|++.++..++..+..++..++.+++.+++++.++|...++++|+.++++++..
T Consensus 992 l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~ 1071 (1622)
T PLN03130 992 MLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYL 1071 (1622)
T ss_pred HHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998888888888877777777777777777555555555554455556
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
++.+..++..+.....+++..+++.|+++|+++||+|+.+++|.+.+.+..+...+..+.......|+...+.++..+++
T Consensus 1072 ~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i 1151 (1622)
T PLN03130 1072 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMI 1151 (1622)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777778888999999999999999999999999988877776665544444333344565555554443332
Q ss_pred HHHHHHHHHhcCCcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCC
Q 011281 161 VFSLFFIISVPEGVV-----DPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNC 235 (489)
Q Consensus 161 ~~~~~~~~~~~~g~i-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~ 235 (489)
.++..+... ..+.. .++.++.+++|...+..+...+......++..+.+++|+.++++.++|.+...+...+..
T Consensus 1152 ~~~~~~~v~-~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~ 1230 (1622)
T PLN03130 1152 WLTASFAVM-QNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPP 1230 (1622)
T ss_pred HHHHHHHHH-cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCC
Confidence 222221111 11111 134456666676666666666677777889999999999999987766432111112222
Q ss_pred CCCCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH
Q 011281 236 SWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD 315 (489)
Q Consensus 236 ~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~ 315 (489)
.+|..+.|+|+||+|+|+++.+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.++
T Consensus 1231 ~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~ 1310 (1622)
T PLN03130 1231 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMD 1310 (1622)
T ss_pred CCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHH
Confidence 34556789999999999766567999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc
Q 011281 316 LRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 395 (489)
Q Consensus 316 ~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall 395 (489)
+|++|++|||||++|+|||||||+++++++++++++|++.|++++++.++|+||||+|||+|.+|||||||||||||||+
T Consensus 1311 LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALL 1390 (1622)
T PLN03130 1311 LRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALL 1390 (1622)
T ss_pred HHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 011281 396 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475 (489)
Q Consensus 396 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l 475 (489)
++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||||+||++|+|+|.|+|+||++++++.|+++
T Consensus 1391 r~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L 1470 (1622)
T PLN03130 1391 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKM 1470 (1622)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999999998766899999
Q ss_pred HHHHh
Q 011281 476 VAEYT 480 (489)
Q Consensus 476 ~~~~~ 480 (489)
+++..
T Consensus 1471 ~~~~~ 1475 (1622)
T PLN03130 1471 VQSTG 1475 (1622)
T ss_pred HHHcC
Confidence 87644
No 8
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.9e-84 Score=764.11 Aligned_cols=476 Identities=40% Similarity=0.690 Sum_probs=414.5
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
|+++++++|++||+++++|+++||+++|++.++..++..+..++..++.+++.+++++..+|.+++++++++++.+++++
T Consensus 1044 l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 1123 (1522)
T TIGR00957 1044 LLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQR 1123 (1522)
T ss_pred HHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999998888888888888888888788888777666666666666777
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
++.+..++..+.....++++.+++.|+++|+++||+|+.+++|.+++.+..+...+..+.......|+...+.++..++.
T Consensus 1124 ~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1203 (1522)
T TIGR00957 1124 FYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIV 1203 (1522)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88788888888888889999999999999999999999999999998888777766655555556677666665544322
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCC
Q 011281 161 VFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQ 240 (489)
Q Consensus 161 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (489)
.+...+. ....+.++++.++.++.|...+..++..+...+..++.++.|++|+.++++.+++.+...+...++..+|..
T Consensus 1204 ~~~~~~~-v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~ 1282 (1522)
T TIGR00957 1204 LFAALFA-VISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPR 1282 (1522)
T ss_pred HHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCC
Confidence 2222111 122456788888888888888888888888888999999999999999998766533111111222235566
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
+.|+|+||+|+|+++.+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence 78999999999987655799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCE
Q 011281 321 SIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 400 (489)
Q Consensus 321 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~i 400 (489)
++|||||++|+||||+||++..+++++++++|++.|++++++.++|+||||+|||+|.+|||||||||||||||+++|+|
T Consensus 1363 ~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957 1363 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred eEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999997678999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 401 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 401 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
||||||||+||++|++.|++.|++..+++|+|+||||++++.+||||+||++|+|+|.|+|+||+++ ++.|++++++
T Consensus 1443 LiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1443 LVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHH
Confidence 9999999999999999999999998899999999999999999999999999999999999999987 6899999876
No 9
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=5.8e-84 Score=714.25 Aligned_cols=470 Identities=21% Similarity=0.271 Sum_probs=395.4
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+++|++++|+.||+++++|++++|++ |++.++.++...+...+.+.+.+++.+++++.++|.+++++++++++.+++..
T Consensus 215 ~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~ 293 (686)
T TIGR03797 215 VWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTL 293 (686)
T ss_pred HHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999997 79999988877666666667677778888899999998876655555555555
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.+..++..+...+..++..+.+.|+++|+++||+++.+.++.+++.+..+...+...+......+......++..+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 373 (686)
T TIGR03797 294 VLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTS 373 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666667777778889999999999999999999999888888777776665555444434444433333333333
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
.+.+++. +.+..|.++.+.+..+..+...+..+...+...+..++.+..+.+|+.++++.+++.+. .... ..+.
T Consensus 374 ~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~--~~~~ 448 (686)
T TIGR03797 374 AALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE---AKTD--PGKL 448 (686)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---CcCC--CCCC
Confidence 3222222 23446788877777777777777777777888888999999999999999876554321 1001 1122
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.|+++||+|+|+++.+++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|.+||+|+++++.+++|++
T Consensus 449 ~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 528 (686)
T TIGR03797 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ 528 (686)
T ss_pred CceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence 35799999999997655679999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 399 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ 399 (489)
|+||||+|++|++||+|||+++++.++++++++++.++++++++++|+|+||++||+|.+|||||||||+||||++++|+
T Consensus 529 i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~ 608 (686)
T TIGR03797 529 LGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPR 608 (686)
T ss_pred cEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999987789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHH
Q 011281 400 VLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 479 (489)
Q Consensus 400 illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~~ 479 (489)
+||||||||+||+++|+++++.+++. ++|+|+||||+++++.||+|++|++|+|+++|+|+||+++ ++.|++++..+
T Consensus 609 iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 609 ILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARRQ 685 (686)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHhc
Confidence 99999999999999999999999876 5899999999999999999999999999999999999986 68899988753
No 10
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-83 Score=658.91 Aligned_cols=476 Identities=22% Similarity=0.312 Sum_probs=402.0
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+++++.+++..+-++.++|++.+.++..++.++.++..+++.+..+.+.++.+++.+++++|..+++++...|++.++..
T Consensus 79 ~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMi 158 (559)
T COG4988 79 VLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMI 158 (559)
T ss_pred HHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999987765443333333333
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
......++..+++......+.+++.|.++|+.++|.|+..+...++..+..+++++..+..-+.....+..+.++.++.+
T Consensus 159 lvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi 238 (559)
T COG4988 159 LVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI 238 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777778899999999999999999999999999998888888888777665555556666777777665
Q ss_pred HHHHHHH-HHhcC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCC
Q 011281 161 VFSLFFI-ISVPE-GVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWP 238 (489)
Q Consensus 161 ~~~~~~~-~~~~~-g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 238 (489)
.++.++. ..... |.++......++.....+..|+-.+...+..-.++..+.+.+..+++.+.+.+.. ..+......
T Consensus 239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~--~~~~~~~~~ 316 (559)
T COG4988 239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGS--GEKAEVANE 316 (559)
T ss_pred HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCC--ccccccccC
Confidence 5554433 22333 5665444444444455566666666666766777788899999998876543211 111011111
Q ss_pred CCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 239 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 239 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
...+++++|++|.|++++ ++++|+||++++|++++|||+||||||||+++|+|+++|++|+|.+||+++++++.+.||+
T Consensus 317 ~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 317 PPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred CCceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 223466669999998775 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
+++||+|+|++|++|+||||.+++ +.+++++.++++++++.++++. |+|+||.|||+|.+|||||+|||++||||+++
T Consensus 396 ~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 396 QISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred HeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999985 5889999999999999999999 99999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
++++|+|||||+||.+||+.|.+.|.++.+++|+|+||||++.+++||+|+||++|+++++|+|+||.++ .+.|++|+.
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~ 553 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLK 553 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 689999999
Q ss_pred HHhc
Q 011281 478 EYTQ 481 (489)
Q Consensus 478 ~~~~ 481 (489)
++.+
T Consensus 554 ~q~~ 557 (559)
T COG4988 554 QQEG 557 (559)
T ss_pred HHhc
Confidence 8776
No 11
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4.7e-83 Score=695.42 Aligned_cols=473 Identities=23% Similarity=0.330 Sum_probs=403.6
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+++++++.|+.+|++.+.|++++|+++|++.++..+...+..++..++++++.+++++.++|.+++++++.+++.+++..
T Consensus 104 ~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~ 183 (582)
T PRK11176 104 LFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIR 183 (582)
T ss_pred HHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999998888888888888888888888999999998876665555555566
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
++.++.++..++.++..+++.+.+.|.++|+++||.++.++.+.+++.+..+.+.+...+......+......++..+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (582)
T PRK11176 184 VVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLAL 263 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777778888899999999999999999999999998888888777766655544444444444444433333
Q ss_pred HHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFF-IISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
.+.+++ .+.+..|.++.+.+..++.+...+..++..+...+..++.+..+.+|+.++++.+++.+. .... ..+.
T Consensus 264 ~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~~--~~~~ 338 (582)
T PRK11176 264 AFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE---GKRV--IERA 338 (582)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC---CCcC--CCCC
Confidence 222222 223446788887777777777777777777777888899999999999999876544221 1001 1122
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.|+++||+|+|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+|+|++|+|.+||+++++++.+++|+.
T Consensus 339 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 418 (582)
T PRK11176 339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418 (582)
T ss_pred CCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence 34699999999998765679999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCCC--CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
|+||||+|++|++|++|||.+++ +.++++++++++.++++++++++|+|+||.+|++|.+|||||||||+||||++++
T Consensus 419 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~ 498 (582)
T PRK11176 419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_pred ceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999863 3789999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
|+++|||||||+||+++++.+++.+.+..+++|+|+||||++.++.||+|++|++|+|+|.|+|++++++ ++.|++++.
T Consensus 499 ~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~ 577 (582)
T PRK11176 499 SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHK 577 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHH
Confidence 9999999999999999999999999988778999999999999999999999999999999999999987 678999987
Q ss_pred HH
Q 011281 478 EY 479 (489)
Q Consensus 478 ~~ 479 (489)
.+
T Consensus 578 ~~ 579 (582)
T PRK11176 578 MQ 579 (582)
T ss_pred HH
Confidence 64
No 12
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.9e-83 Score=753.21 Aligned_cols=480 Identities=38% Similarity=0.671 Sum_probs=393.7
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
|+++++++|++||+++++|++++|+++|++.++..++..+..++..++.+++.+++++.+++...++++|+.++++++..
T Consensus 989 l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1495)
T PLN03232 989 MLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYL 1068 (1495)
T ss_pred HHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999888887777777777777766666665554444454444444455
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
++.+..++..+.....++++.+++.|+++|+++||+|+.+++|.+.+.+..+...+..+.......|.......+..+++
T Consensus 1069 ~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~ 1148 (1495)
T PLN03232 1069 YYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMI 1148 (1495)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777778889999999999999999999999999988887777666555444333334454444433332222
Q ss_pred HHHHHHHHHhcCCccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCC
Q 011281 161 VFSLFFIISVPEGVVD-----PAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNC 235 (489)
Q Consensus 161 ~~~~~~~~~~~~g~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~ 235 (489)
.+...+.. ...+.+. ++..+.++.|...+..++..+...+..++.++.+++|+.++++.++|.+...+...+..
T Consensus 1149 ~~~~~~~v-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~ 1227 (1495)
T PLN03232 1149 WLTATFAV-LRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVS 1227 (1495)
T ss_pred HHHHHHHH-HccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCC
Confidence 22111111 1112211 22344555666666666666777888899999999999999987765432111111222
Q ss_pred CCCCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH
Q 011281 236 SWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD 315 (489)
Q Consensus 236 ~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~ 315 (489)
.+|..+.|+|+||+|+|+++.+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.++
T Consensus 1228 ~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~ 1307 (1495)
T PLN03232 1228 GWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTD 1307 (1495)
T ss_pred CCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHH
Confidence 34556689999999999766567999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc
Q 011281 316 LRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 395 (489)
Q Consensus 316 ~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall 395 (489)
+|++|++|||||++|+|||||||+++++++++++++|++.+++++++.++|+||||+|||+|.+|||||||||+|||||+
T Consensus 1308 lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALL 1387 (1495)
T PLN03232 1308 LRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALL 1387 (1495)
T ss_pred HHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 011281 396 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475 (489)
Q Consensus 396 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l 475 (489)
++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||||+||++|+|+|.|+|+||++++++.|+++
T Consensus 1388 r~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l 1467 (1495)
T PLN03232 1388 RRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRM 1467 (1495)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999999998866789999
Q ss_pred HHHHhc
Q 011281 476 VAEYTQ 481 (489)
Q Consensus 476 ~~~~~~ 481 (489)
+++...
T Consensus 1468 ~~~~~~ 1473 (1495)
T PLN03232 1468 VHSTGP 1473 (1495)
T ss_pred HHHhCh
Confidence 876543
No 13
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=6e-83 Score=706.83 Aligned_cols=468 Identities=24% Similarity=0.356 Sum_probs=393.6
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
++++++++|+.+|++.++|++++|+++|++.++..+...+..++.+++.+++.+++++.++|.++++++...++.+++.+
T Consensus 240 l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~ 319 (711)
T TIGR00958 240 LFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEK 319 (711)
T ss_pred HHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999888888888888888888899999999998877666666666677
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.++.++..++.++..++..+.+.|+++|+++||.|+.++++.+++.+..++..+...+..............+..+..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (711)
T TIGR00958 320 VFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQ 399 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888888888899999999999999999999999888888777766655443332222222222222222222
Q ss_pred HHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFF-IISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
.+.+++ .+.+..|.++.+.+..++.|...+..++..+......++++..+.+|+.++++.+++.+.. . ...+.+.
T Consensus 400 ~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~--~~~~~~~ 475 (711)
T TIGR00958 400 VLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--G--TLAPLNL 475 (711)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--C--CCCCCCC
Confidence 222222 2234568888887777777877777777778888889999999999999999765442211 1 0011123
Q ss_pred CccEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 240 QGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
.+.|+++||+|+|++. ++++|+|+||+|+|||+++||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 4579999999999853 346999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEcCCCccCccchhhhcCCC-CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
+|+||||+|++|++||+|||.++ ++.++++++++++.++++++++++|+|+||.+||+|.+|||||||||+||||++++
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~ 635 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRK 635 (711)
T ss_pred hceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999997 46789999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l 475 (489)
|+|+|||||||+||+++++.+++ . ...+++|+|+||||+++++.||+|++|++|+|+|+|+|+||+++ ++.|+++
T Consensus 636 p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~-~~~y~~l 710 (711)
T TIGR00958 636 PRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED-QGCYKHL 710 (711)
T ss_pred CCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC-CCchHhc
Confidence 99999999999999999999998 3 33468999999999999999999999999999999999999987 5788775
No 14
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.7e-82 Score=688.32 Aligned_cols=471 Identities=21% Similarity=0.272 Sum_probs=387.4
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISI-WYQ 79 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~-~~~ 79 (489)
+++|++++|+.+|++.++|++++|+++|++.++.++...+..++.+++++++.+++++.++|.++++++.++++.. +++
T Consensus 99 l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~ 178 (574)
T PRK11160 99 TFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLP 178 (574)
T ss_pred HHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999998888888888888888889999999999886654443332 233
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 011281 80 QYYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSII 159 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (489)
..+.+..++..++..+..+++.+.+.|.++|+++||+|+.++++.+++.+..+++.+...+.............++..+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (574)
T PRK11160 179 LLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLT 258 (574)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556667777778889999999999999999999999998888888777766655554443333333333333333
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCC
Q 011281 160 FVFSLFFIISVPEGVVDPAIAGLAVTFGLN-LNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWP 238 (489)
Q Consensus 160 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 238 (489)
..+.+++......|.++.+....++.|... ...+...+...+..++++..+++|+.++++.+++.+.. +.. . ..+
T Consensus 259 ~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~-~~~-~--~~~ 334 (574)
T PRK11160 259 VVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP-TTS-T--AAA 334 (574)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-ccc-C--CCC
Confidence 332222222112455555544444444322 22344445566778888999999999999865432110 000 0 112
Q ss_pred CCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 239 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 239 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
..+.|+++||+|+|+++.+++|+|+||++++||+++||||||||||||+++|+|+|+|++|+|.+||+++++++.+++|+
T Consensus 335 ~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 414 (574)
T PRK11160 335 DQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQ 414 (574)
T ss_pred CCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHh
Confidence 33579999999999865446999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
+|+||||+|++|++|++|||+++. +.++++++++++.+++++++++ |+||||++||+|.+|||||||||+||||++++
T Consensus 415 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 415 AISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred heeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999874 6789999999999999999999 99999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
|+++|||||||+||+++++.+++.+.+..+++|+|+||||++++..||+|++|++|++++.|+|+||+++ ++.|+++++
T Consensus 494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 494 APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc-CcHHHHHHh
Confidence 9999999999999999999999999988789999999999999999999999999999999999999987 688999876
No 15
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=7.2e-83 Score=708.37 Aligned_cols=472 Identities=21% Similarity=0.303 Sum_probs=396.4
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+++|++++|+++|+++++|++++|+++| +.++.++...+..++.+++.+++.+++++.++|.+++++++++++.+++..
T Consensus 233 ~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~ 311 (710)
T TIGR03796 233 FLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQ 311 (710)
T ss_pred HHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999988 678888877777778888888888888999999998877666666555666
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
++.++.++..++.....+++.+.+.|+++|+++||+++.++.+.+++.+...+..+...+......+......++..+..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 391 (710)
T TIGR03796 312 LVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNS 391 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777778899999999999999999999999988888776666555444433333333333333333333
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccc--CCCCCC-
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEA--SRPNCS- 236 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~--~~~~~~- 236 (489)
++.++++ +.+..|.++.+.+..+..+...+..++..+...+..++.+..+++|+.++++.+++.+..... ......
T Consensus 392 ~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~ 471 (710)
T TIGR03796 392 ALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPS 471 (710)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccC
Confidence 3222222 234568888887777777777777887778888889999999999999999876543211100 000001
Q ss_pred CCCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh
Q 011281 237 WPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL 316 (489)
Q Consensus 237 ~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 316 (489)
.+..+.|+++||+|+|++..+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++
T Consensus 472 ~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 472 PRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred CCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH
Confidence 12245799999999998765679999999999999999999999999999999999999999999999999999999999
Q ss_pred hccceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc
Q 011281 317 RSRLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 395 (489)
Q Consensus 317 r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall 395 (489)
|++|+||||+|++|++||+|||.+++ +.++++++++++.+++++++.++|+|+||.+||+|.+|||||||||+||||++
T Consensus 552 r~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall 631 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631 (710)
T ss_pred HhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999874 68899999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 011281 396 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475 (489)
Q Consensus 396 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l 475 (489)
++|+|+|||||||+||+++|+++.+.+.+ .++|+|+||||+++++.||||++|++|+|++.|+|+||+++ ++.|+++
T Consensus 632 ~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l 708 (710)
T TIGR03796 632 RNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARL 708 (710)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHH
Confidence 99999999999999999999999999986 48999999999999999999999999999999999999986 6789887
Q ss_pred H
Q 011281 476 V 476 (489)
Q Consensus 476 ~ 476 (489)
+
T Consensus 709 ~ 709 (710)
T TIGR03796 709 I 709 (710)
T ss_pred h
Confidence 6
No 16
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.4e-82 Score=690.90 Aligned_cols=473 Identities=25% Similarity=0.373 Sum_probs=391.5
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
++++++++|+++|++.++|++++|+++|++.++.++...+..++.+++.+++.+++++.++|.++++++..+++.+++..
T Consensus 104 l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~ 183 (592)
T PRK10790 104 VMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMV 183 (592)
T ss_pred HHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999998888888888888888888888889999988765544444433444
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-HHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWL-CFHIDMLSSII 159 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 159 (489)
.+.+..++..+......++..+.+.|.++|+++||.|+.++++.+++.+..++..+...+........ .....++..+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (592)
T PRK10790 184 IYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALI 263 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555556667788899999999999999999999888887776665544333322211111 11222222221
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 160 FVFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 160 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
..+..++......|.++.+.+..++.+...+..++..+...+..++.+..+.+|+.++++.++++.. ... ..+.
T Consensus 264 ~~~~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~---~~~---~~~~ 337 (592)
T PRK10790 264 LCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG---NDD---RPLQ 337 (592)
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC---CCc---cCCC
Confidence 1111111112346778877777777777777778777888888999999999999999876543211 111 1122
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.|+++||+|+|+++ +++|+|+||++++||+++|||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++
T Consensus 338 ~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~ 416 (592)
T PRK10790 338 SGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQG 416 (592)
T ss_pred CCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhh
Confidence 3569999999999854 459999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 399 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ 399 (489)
|+||||+|++|++|++|||+++++.++++++++++.+|++++++++|+||||.+|++|.+|||||||||+|||||+++|+
T Consensus 417 i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ 496 (592)
T PRK10790 417 VAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQ 496 (592)
T ss_pred eEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHH
Q 011281 400 VLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 479 (489)
Q Consensus 400 illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~~ 479 (489)
|+|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|+|+||+++ ++.|+++++.+
T Consensus 497 illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~~~ 575 (592)
T PRK10790 497 ILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQLQ 575 (592)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHHHH
Confidence 99999999999999999999999988788999999999999999999999999999999999999987 68999999865
Q ss_pred hc
Q 011281 480 TQ 481 (489)
Q Consensus 480 ~~ 481 (489)
..
T Consensus 576 ~~ 577 (592)
T PRK10790 576 LA 577 (592)
T ss_pred hh
Confidence 43
No 17
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1e-82 Score=706.73 Aligned_cols=470 Identities=24% Similarity=0.303 Sum_probs=394.0
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
++++++++|+.+|+++++|++++|++ |++.+..++.......+..++++++.+++++.++|+++++++.++++.+++..
T Consensus 235 ~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~ 313 (708)
T TIGR01193 235 YIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIII 313 (708)
T ss_pred HHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999997 89999888777666666677777777788889999998877666665555556
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.++.++..++..+..++..+.+.|+++|+++||+++.++++.+++.+....+.+...+.............++..+..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (708)
T TIGR01193 314 LFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILN 393 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777778888888999999999999999999999999888887777666555444433322222222223322222
Q ss_pred HHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFF-IISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
++.+++ .+.+..|.++.+.+..+..+...+..++..+...+..++.+..+.+|+.++++.+++.+... ......+.
T Consensus 394 i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~~~ 470 (708)
T TIGR01193 394 VVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK---KRTELNNL 470 (708)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc---cccCCCCC
Confidence 222222 23345788888887777777777778887788888899999999999999998765532111 00111123
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++
T Consensus 471 ~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 549 (708)
T TIGR01193 471 NGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQF 549 (708)
T ss_pred CCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHh
Confidence 4579999999999754 469999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCC--CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPL--EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~--~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
|+||||+|++|++||+|||.++ ++.++++++++++.+++++++.++|+||||.|||+|.+|||||||||+||||++++
T Consensus 550 i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 550 INYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred eEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999997 46889999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
|++||||||||+||+++++.+++.|.+. +++|+|+||||+++++.||+|++|++|++++.|+|+||+++ ++.|+++++
T Consensus 630 p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 630 SKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGFYASLIH 707 (708)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc-CCcHHHHhh
Confidence 9999999999999999999999999875 68999999999999999999999999999999999999987 678988864
No 18
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-83 Score=647.50 Aligned_cols=470 Identities=21% Similarity=0.308 Sum_probs=391.2
Q ss_pred hhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHH
Q 011281 2 HFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPV-IAISIWYQQ 80 (489)
Q Consensus 2 ~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~-~~l~~~~~~ 80 (489)
|+|+...+..-..+.++||+++|++.|++.+|..|-..+.+++.+++..++..+.+.+++|..++.+..+ +.+++.++.
T Consensus 98 f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~ 177 (573)
T COG4987 98 FEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPT 177 (573)
T ss_pred HHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888889999999999999999999999999999988888877777777778899887654333 233344556
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.+..++..++....++.+.+.+.|.+.|..+++.||+++.|.+++.+..+.+.+...+......|..+...++..+..
T Consensus 178 ~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v 257 (573)
T COG4987 178 LFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLV 257 (573)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777777788999999999999999999999999999998888777777776666667777776666665544
Q ss_pred H-HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCC
Q 011281 161 V-FSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLI-SKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWP 238 (489)
Q Consensus 161 ~-~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 238 (489)
. ..+|.......|..+......++...+.....+..+. ..+..+++...|+.|+.++.+.+++.... .+....
T Consensus 258 ~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~----~~~~~~- 332 (573)
T COG4987 258 IGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP----DEQTAT- 332 (573)
T ss_pred HHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC----ccccCC-
Confidence 4 3333333244455442222221111111111122233 56678889999999999998766543211 111111
Q ss_pred CCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 239 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 239 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
....++++||+|+|+++.+++|+|+||++++||++||+|+|||||||++++++|-|+|++|+|.++|.++..++.+++|+
T Consensus 333 ~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e 412 (573)
T COG4987 333 TGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRE 412 (573)
T ss_pred ccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHH
Confidence 11269999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEcCCCccCccchhhhcCCC-CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
.|++++|.+++|++|+|+|+.++ ++++||+++++++++||.+++.+.|+||+|++||+|.+||||||||++|||+|++|
T Consensus 413 ~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 413 TISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred HHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 99999999999999999999986 57899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
+|++||||||.+||++||+++++.+....++||+|+||||+..++.||||+||++|+|+|+|+|.||+.+ ++.|+++++
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 9999999999999999999999999998899999999999999999999999999999999999999996 788988865
No 19
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3e-82 Score=744.11 Aligned_cols=480 Identities=34% Similarity=0.538 Sum_probs=405.5
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
++++++++|+.||+++++|+++||+++|++.++..++..+..++..++.+++.+++++..+|.++++++|+.++.+.+.+
T Consensus 1037 l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~ 1116 (1560)
T PTZ00243 1037 LLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQ 1116 (1560)
T ss_pred HHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999988888888888888888888888888666555555555555667
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
++.+..++.++......+++.+.+.|+++|+++||+|+.++.+.+++.+..+...+..+.......|......++..+..
T Consensus 1117 ~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~ 1196 (1560)
T PTZ00243 1117 FYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVV 1196 (1560)
T ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888889999999999999999999999999999988877777666555545556676666665554433
Q ss_pred HHHHHHH-HH--hcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-cc-c-------
Q 011281 161 VFSLFFI-IS--VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPP-LV-I------- 228 (489)
Q Consensus 161 ~~~~~~~-~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~-~~-~------- 228 (489)
.+.+++. .. ...+.++.+.++.++++...+..++..+...+..++.++.+++|+.++++..++++ .. .
T Consensus 1197 ~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~ 1276 (1560)
T PTZ00243 1197 TVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALE 1276 (1560)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccc
Confidence 2222221 11 12334566666777777777777777778888899999999999999986322211 00 0
Q ss_pred ---------------ccCCCC---CCCCCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHH
Q 011281 229 ---------------EASRPN---CSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTL 290 (489)
Q Consensus 229 ---------------~~~~~~---~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l 290 (489)
+...+. ..++..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||+++|
T Consensus 1277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lL 1356 (1560)
T PTZ00243 1277 RRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTF 1356 (1560)
T ss_pred cccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 000000 01123457999999999987666799999999999999999999999999999999
Q ss_pred hcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhcccccc
Q 011281 291 FRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLE 370 (489)
Q Consensus 291 ~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gld 370 (489)
+|+|+|++|+|.+||+|+++++.+++|++|+||||+|+||+||||+||+++++++++++++|++.|++++++.++|+|||
T Consensus 1357 lrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gld 1436 (1560)
T PTZ00243 1357 MRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGID 1436 (1560)
T ss_pred hCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCccccc
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred chhhcCCCCCCchHHHHHHHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEE
Q 011281 371 SRVTENGENWSMGQRQLVCLARVLLKK-SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLL 449 (489)
Q Consensus 371 t~vge~G~~LSgGq~Qrl~laRall~~-~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~ 449 (489)
|.|||+|.+|||||||||||||||+++ |+|||||||||+||+++++.|++.|.+..+++|+|+||||++++.+||+|+|
T Consensus 1437 t~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlV 1516 (1560)
T PTZ00243 1437 SRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIV 1516 (1560)
T ss_pred ccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEE
Confidence 999999999999999999999999996 8999999999999999999999999998889999999999999999999999
Q ss_pred EeCCEEEEecChhHHhhcCCChHHHHHHHHh
Q 011281 450 LSYGLIEEFDSPTRLLENKSSSFAQLVAEYT 480 (489)
Q Consensus 450 l~~G~i~~~g~~~el~~~~~~~~~~l~~~~~ 480 (489)
|++|+|+|.|+|+||++++++.|+++++...
T Consensus 1517 Ld~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1517 MDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred EECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999999999866789999987654
No 20
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.2e-81 Score=696.52 Aligned_cols=462 Identities=23% Similarity=0.290 Sum_probs=389.4
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+++|++++|+++ +++++|++++|+ +|++.++.++...+...+..++++++.+++++.++|.++++++..+++.+++..
T Consensus 226 ~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~ 303 (694)
T TIGR03375 226 LFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGL 303 (694)
T ss_pred HHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 478999999998 788999999999 799999998877766666777777777788889999998876655555555556
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.++.++..++..+..++..+.+.|+++|+++||.++.++.+.+++.+..++..+...+.............++..+..
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (694)
T TIGR03375 304 LLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVS 383 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777778888999999999999999999999999988888877776655544443333333333333333322
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
.+.++++ ..+..|.++.+.+..+..+...+..++..+...+..++.+..+.+|+.++++.+++.+.. .......+.
T Consensus 384 ~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~---~~~~~~~~~ 460 (694)
T TIGR03375 384 VAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG---TRFLHRPRL 460 (694)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCCCCCCc
Confidence 2222222 334567888887777777777777887778888889999999999999999876543211 000001122
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.|+++||+|+|+++.+++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++
T Consensus 461 ~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred cceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 35799999999998665679999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
|+||||+|++|++||+|||.+++ +.++++++++++.++++++++++|+||||.+||+|.+|||||||||+||||++++|
T Consensus 541 i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p 620 (694)
T TIGR03375 541 IGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDP 620 (694)
T ss_pred cEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999985 48999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
+++|||||||+||+++++.+++.+.+..+++|+|+||||+++++.||+|++|++|+|+|.|+|+||+++
T Consensus 621 ~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 621 PILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999988889999999999999999999999999999999999999875
No 21
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-83 Score=704.39 Aligned_cols=476 Identities=21% Similarity=0.280 Sum_probs=390.6
Q ss_pred hhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011281 2 HFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQY 81 (489)
Q Consensus 2 ~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~ 81 (489)
++.+++++++|||.+.+|++.+++++|++.+++.+...+..++..+.++++.+++.|...|+++++.++..|++......
T Consensus 111 l~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~ 190 (1228)
T KOG0055|consen 111 LKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGL 190 (1228)
T ss_pred HHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999899999999999999999999888777777666666
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 82 YLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFV 161 (489)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (489)
+.+.+.+...+.+.+.++.-+...|++.++++|.+|+-|++..+++.+..+...+...+.............++......
T Consensus 191 ~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a 270 (1228)
T KOG0055|consen 191 LARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYA 270 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 66666777777777778888999999999999999999988888877777666555444433322222222233333334
Q ss_pred HHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCC
Q 011281 162 FSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQ 240 (489)
Q Consensus 162 ~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (489)
..+|+. ..+..+..+++.+...+.....-...+......+..+..+..++.+|++.++..+..+.... .........
T Consensus 271 ~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~--~~~~~~~~~ 348 (1228)
T KOG0055|consen 271 LAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSK--GGRVLSSIK 348 (1228)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccc--cCCcccccc
Confidence 444443 22223334433322111111111111122234566788899999999998875443221111 111112245
Q ss_pred ccEEEEEEEEEECCCC-CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 241 GEVDIHGLQVRYAPHL-PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
+.|+|+||+|+||... .++|+|+||+|++|+.+||||||||||||++++|.|+|+|++|+|++||.|++.++.+++|++
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence 6899999999998542 358999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
||+|+|+|.||++||+|||.+++ +++++++++|++.++.++||.++|+||||++||+|.+|||||||||||||||++||
T Consensus 429 iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P 508 (1228)
T KOG0055|consen 429 IGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNP 508 (1228)
T ss_pred cCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCC
Confidence 99999999999999999999985 78999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
+|||||||||+||+++|+.++++|.+..+|+|.|+|||||+++++||+|+||++|+|+|.|+|+||++.+ +.|.+|+..
T Consensus 509 ~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~ 587 (1228)
T KOG0055|consen 509 KILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRL 587 (1228)
T ss_pred CEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 999999986
Q ss_pred Hh
Q 011281 479 YT 480 (489)
Q Consensus 479 ~~ 480 (489)
|.
T Consensus 588 Q~ 589 (1228)
T KOG0055|consen 588 QE 589 (1228)
T ss_pred Hh
Confidence 54
No 22
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1e-80 Score=675.90 Aligned_cols=473 Identities=24% Similarity=0.351 Sum_probs=407.7
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+++++++.|.++|++.+.|++++|+++|++.++.++...+..++.+++.+++.+++++.++|.++++++++.++.+++..
T Consensus 93 l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~ 172 (571)
T TIGR02203 93 MFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMR 172 (571)
T ss_pred HHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999988888888888889999999999999999887777677666777
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
++.++.++..+...+..+++.+.+.|.++|+++||.++.++++.+++.+..+...+...+......+......++..+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (571)
T TIGR02203 173 RVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLAL 252 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888888888999999999999999999999999988888887777666555444444444443344333333
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
++.++++ +.+..|.++.+.+..+..+...+..++..+......++++..+.+|+.++++.+++.+. ...+. .+.
T Consensus 253 ~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~--~~~ 327 (571)
T TIGR02203 253 AVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT---GTRAI--ERA 327 (571)
T ss_pred HHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCCC--CCC
Confidence 3333222 23456888888877777777778788777888888999999999999999876544221 11111 123
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.|+++||+|+|++..+++|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|.+||+++++++.+++|++
T Consensus 328 ~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 328 RGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred CCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 35699999999998655569999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCCC--CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
|+|+||+|++|++|++|||.+++ +.++++++++++.+++++++.++|+|+||++|++|.+|||||||||+||||++++
T Consensus 408 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 408 VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred ceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999874 6889999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
|+|+|||||||+||+++++.+++.|.+..+++|+|+||||++.+..||+|++|++|++++.|+|++++++ .+.|++++.
T Consensus 488 ~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~ 566 (571)
T TIGR02203 488 APILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQLHN 566 (571)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHHHHH
Confidence 9999999999999999999999999988788999999999999999999999999999999999999987 578988877
Q ss_pred HH
Q 011281 478 EY 479 (489)
Q Consensus 478 ~~ 479 (489)
.+
T Consensus 567 ~~ 568 (571)
T TIGR02203 567 MQ 568 (571)
T ss_pred Hh
Confidence 54
No 23
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.4e-81 Score=729.02 Aligned_cols=479 Identities=22% Similarity=0.249 Sum_probs=375.6
Q ss_pred ChhHHhcCCcccccc--cCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDA--TPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWY 78 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~--~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~ 78 (489)
+|++++++|+.||++ +++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.++++++++.+++...
T Consensus 905 lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~ 984 (1466)
T PTZ00265 905 LFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRV 984 (1466)
T ss_pred HHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999986 889999999999999999988888888888888888888889999999887665544333221
Q ss_pred HHHHHHHH--HHHHHH-------------HHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHH
Q 011281 79 QQYYLPSA--RELSRL-------------VGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAA 143 (489)
Q Consensus 79 ~~~~~~~~--~~~~~~-------------~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (489)
.....+.. .+..+. ..+..++..+.+.|+++|+++||+|+.++++.+++.+..+...+...+...
T Consensus 985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~ 1064 (1466)
T PTZ00265 985 FAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTL 1064 (1466)
T ss_pred HHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111110 011000 122245667899999999999999999999999888877766554444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 011281 144 AMQWLCFHIDMLSSIIFVFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPN 222 (489)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~ 222 (489)
...........+..+..+++++++ ..+..|.++.+.+..++.+......+...+...+..++.+..+++|++++++.++
T Consensus 1065 ~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~ 1144 (1466)
T PTZ00265 1065 VNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKS 1144 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 333333333333333333333332 2344677776655444333222222334455667788899999999999997654
Q ss_pred CCCcccccCCCC-CCCCCCccEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC----
Q 011281 223 EPPLVIEASRPN-CSWPSQGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP---- 296 (489)
Q Consensus 223 ~~~~~~~~~~~~-~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~---- 296 (489)
+.+......... ...+..+.|+|+||+|+||+. ..++|+|+||+|++|+++|||||||||||||+++|+|+|+|
T Consensus 1145 ~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~ 1224 (1466)
T PTZ00265 1145 NIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDH 1224 (1466)
T ss_pred cCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccc
Confidence 321100000000 001123579999999999743 23699999999999999999999999999999999999999
Q ss_pred --------------------------------------------------CCceEEECCEeCCCCChHHhhccceEEcCC
Q 011281 297 --------------------------------------------------TAGLIAIDGIDISSIGLHDLRSRLSIIPQD 326 (489)
Q Consensus 297 --------------------------------------------------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~ 326 (489)
++|+|++||+|+++++.+++|++|+||+|+
T Consensus 1225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qe 1304 (1466)
T PTZ00265 1225 HIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQE 1304 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCC
Confidence 699999999999999999999999999999
Q ss_pred CccCccchhhhcCCC-CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeC
Q 011281 327 PTMFEGSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE 405 (489)
Q Consensus 327 ~~lf~~ti~~Ni~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDE 405 (489)
|+||++||+|||.++ ++++++++++|++.+++++||.+||+||||.|||+|.+|||||||||||||||+++|+||||||
T Consensus 1305 p~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDE 1384 (1466)
T PTZ00265 1305 PMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDE 1384 (1466)
T ss_pred CccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999999998 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeC----CEEE-EecChhHHhhcCCChHHHHHHH
Q 011281 406 ATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSY----GLIE-EFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 406 pts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~----G~i~-~~g~~~el~~~~~~~~~~l~~~ 478 (489)
|||+||+++|+.|++.|.+.. +++|+|+||||+++++.||+|+||++ |+++ |+|+|+||++++++.|+++++.
T Consensus 1385 aTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~ 1464 (1466)
T PTZ00265 1385 ATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464 (1466)
T ss_pred cccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhh
Confidence 999999999999999998873 68999999999999999999999999 9955 8999999998446899999876
Q ss_pred H
Q 011281 479 Y 479 (489)
Q Consensus 479 ~ 479 (489)
+
T Consensus 1465 ~ 1465 (1466)
T PTZ00265 1465 A 1465 (1466)
T ss_pred c
Confidence 4
No 24
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.6e-80 Score=727.14 Aligned_cols=476 Identities=30% Similarity=0.549 Sum_probs=403.6
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
|++++++.|++||+++++|+++||+++|++.++..++..+..++..++.+++.+++++.++|.++++++|++++++++++
T Consensus 964 l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~ 1043 (1490)
T TIGR01271 964 MLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRA 1043 (1490)
T ss_pred HHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999998888888888888888888888888877766666666566677
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
++.+..++..+.....++++.+++.|+++|+.+||+|+.+++|.+++.+..+...+..+.......|+...+.++..+.+
T Consensus 1044 ~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~ 1123 (1490)
T TIGR01271 1044 YFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFF 1123 (1490)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888889999999999999999999999999999998887776544444444445566655555443322
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccc----------
Q 011281 161 VFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEA---------- 230 (489)
Q Consensus 161 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~---------- 230 (489)
....++... ...++.+.++.++++...+...+..+...+..+...+.+++|+.++.+.+++.+...+.
T Consensus 1124 ~~~~~l~~~--~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~ 1201 (1490)
T TIGR01271 1124 IAVTFIAIG--TNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVL 1201 (1490)
T ss_pred HHHHHHHHH--HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence 222221111 11233445666666666666666667777788999999999999999876553211110
Q ss_pred ----CCCCCCCCCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE
Q 011281 231 ----SRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI 306 (489)
Q Consensus 231 ----~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~ 306 (489)
..++..||..+.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||+++|+|+++ ++|+|.+||+
T Consensus 1202 ~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~ 1280 (1490)
T TIGR01271 1202 VIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGV 1280 (1490)
T ss_pred ccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCE
Confidence 01112356667899999999998766779999999999999999999999999999999999997 7999999999
Q ss_pred eCCCCChHHhhccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 307 DISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 307 ~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
|++.++.+++|++|+||||+|++|+||||+||++..++++++++++++.+++++++.++|+||||+|||+|.+|||||||
T Consensus 1281 di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQ 1360 (1490)
T TIGR01271 1281 SWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQ 1360 (1490)
T ss_pred EcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHH
Confidence 99999999999999999999999999999999988788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
||||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++.+||||+||++|+|+|.|+|++|++
T Consensus 1361 rL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1361 LMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999997
Q ss_pred cCCChHHHHHHHHh
Q 011281 467 NKSSSFAQLVAEYT 480 (489)
Q Consensus 467 ~~~~~~~~l~~~~~ 480 (489)
+ ++.|++++++..
T Consensus 1441 ~-~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1441 E-TSLFKQAMSAAD 1453 (1490)
T ss_pred C-CcHHHHHHHHhC
Confidence 5 789999998644
No 25
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=8.6e-80 Score=670.08 Aligned_cols=477 Identities=19% Similarity=0.279 Sum_probs=395.8
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
++++++++|+.+|++.+.|++++|+++|++.+...+...+..++..++.+++.+++++.++|.+++++++++++..++..
T Consensus 95 l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~ 174 (588)
T PRK13657 95 YFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITT 174 (588)
T ss_pred HHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999887776776776667777777778889999988876666566556666
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.++.++..+...+..+++.+.+.|.++|+++||.|+.++.+.+++.+..++..+..........+......++..+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (588)
T PRK13657 175 LVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITM 254 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777778888999999999999999999999999888888777776655544433333333333333333322
Q ss_pred HHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFF-IISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
.+.+++ .+.+..|.++.+.+.+++.+...+..++..+...+..+..+..+++|+.++++.+++.+.. +. ... ..+.
T Consensus 255 ~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~-~~~-~~~~ 331 (588)
T PRK13657 255 LAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP-PG-AID-LGRV 331 (588)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-CC-CCC-cCCC
Confidence 222222 2334567888877777777766677776667777778888899999999988654332110 00 000 0112
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.|+++||+|+|++. +++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|.+||+++++++.+++|++
T Consensus 332 ~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 410 (588)
T PRK13657 332 KGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410 (588)
T ss_pred CCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 3469999999999854 459999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
|+||||+|++|++|++|||++++ +.++++++++++.+++.+++.++|+|+||.+|++|.+|||||||||+|||||+++|
T Consensus 411 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 411 IAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred eEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999974 67899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
+++|||||||+||+++++.+++.+.+..+++|+|+||||++.++.||+|++|++|++++.|+|++++++ .+.|++++.+
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~ 569 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLRA 569 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHHH
Confidence 999999999999999999999999988778999999999999999999999999999999999999987 6889999886
Q ss_pred HhcC
Q 011281 479 YTQR 482 (489)
Q Consensus 479 ~~~~ 482 (489)
+.+.
T Consensus 570 ~~~~ 573 (588)
T PRK13657 570 QGML 573 (588)
T ss_pred hhcc
Confidence 5433
No 26
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5e-80 Score=683.40 Aligned_cols=473 Identities=22% Similarity=0.317 Sum_probs=397.3
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
++++++++|+.+|+++++|++++|+ +|++.+++++...+..++..++++++++++++.++|.+++++++.+++.+++..
T Consensus 218 ~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~ 296 (694)
T TIGR01846 218 LYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSV 296 (694)
T ss_pred HHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999 699999998877776766666666667788899999998876655555555555
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.+..++..+...+..++..+.+.|+++|+++||+++.++++.+++.+..+++.+...+......+......++..+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 376 (694)
T TIGR01846 297 FVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTF 376 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666777889999999999999999999999988888877776665555444333333333333333333
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
++.++++ +.+..|.++.+.+.++..+...+..++..+...+..++.+..+++|+.++++.+++.+.. .. .. ....
T Consensus 377 ~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~-~~-~~~~ 452 (694)
T TIGR01846 377 AILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GL-AA-LPEL 452 (694)
T ss_pred HHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CC-CC-CCCC
Confidence 3323222 234467888887777777777777887778888889999999999999999876543211 10 00 1112
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.|+++||+|+|+++.+++|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|.+||+++++++.+++|++
T Consensus 453 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 453 RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 35799999999998665569999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
|+||+|++++|++|++|||.+++ +.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|
T Consensus 533 i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~ 612 (694)
T TIGR01846 533 MGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612 (694)
T ss_pred CeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999864 67899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
+++|||||||+||+++++.+.+.+.+..+++|+|+||||+++++.||+|++|++|+|++.|+|+|++++ ++.|++++.+
T Consensus 613 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~ 691 (694)
T TIGR01846 613 RILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQQ 691 (694)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHHh
Confidence 999999999999999999999999988788999999999999999999999999999999999999987 6889999875
Q ss_pred H
Q 011281 479 Y 479 (489)
Q Consensus 479 ~ 479 (489)
+
T Consensus 692 ~ 692 (694)
T TIGR01846 692 Q 692 (694)
T ss_pred h
Confidence 4
No 27
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.1e-79 Score=661.48 Aligned_cols=475 Identities=21% Similarity=0.252 Sum_probs=391.9
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVI-SQAGWQVFIAFIPVIAISIWYQ 79 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~-~~~~~~l~l~~~~~~~l~~~~~ 79 (489)
++++++++|+++|+++++|++++|+++|++.++..+...+..++..++.+++.++++ +.++|.+++++++++++.+++.
T Consensus 75 l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~ 154 (569)
T PRK10789 75 FYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMI 154 (569)
T ss_pred HHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999998777666666666655555554444 5799998877666656655666
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 011281 80 QYYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSII 159 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (489)
+.+.++.++..+..++..+++.+.+.|.++|+++||+|+.++++.+++.+..+...+...+..............+..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (569)
T PRK10789 155 KRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMA 234 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777888999999999999999999999998888877766655544443332222222222222222
Q ss_pred HHHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCC
Q 011281 160 FVFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWP 238 (489)
Q Consensus 160 ~~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 238 (489)
..+.+++. +.+..|.++.+.+..+..+...+..++..+...+..++.+..+.+|+.++++.+++.+. ..... .+
T Consensus 235 ~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~--~~ 309 (569)
T PRK10789 235 NLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD---GSEPV--PE 309 (569)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCCC--CC
Confidence 22222221 23446778877777777777777777777777788899999999999999876543211 10011 11
Q ss_pred CCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 239 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 239 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
..+.|+++|++|+|+++.+++|+|+||++++|++++|+||||||||||+++|+|+|+|++|+|.+||+++++++.+++|+
T Consensus 310 ~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 310 GRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred CCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHh
Confidence 23469999999999865556999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEcCCCccCccchhhhcCCC-CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
.++|++|+|++|++|++|||.++ ++.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++
T Consensus 390 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~ 469 (569)
T PRK10789 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN 469 (569)
T ss_pred heEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999987 46789999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
|+++|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+|+|++++ ++.|++++.
T Consensus 470 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~ 548 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYR 548 (569)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHH
Confidence 9999999999999999999999999988789999999999999999999999999999999999999987 678999988
Q ss_pred HHhc
Q 011281 478 EYTQ 481 (489)
Q Consensus 478 ~~~~ 481 (489)
.+..
T Consensus 549 ~~~~ 552 (569)
T PRK10789 549 YQQL 552 (569)
T ss_pred Hhhh
Confidence 6543
No 28
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.5e-78 Score=656.76 Aligned_cols=478 Identities=21% Similarity=0.271 Sum_probs=394.5
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
++++++++|++||+++++|++++|+++|++.++.++...+..++..++++++++++++.++|.++++++.+.++.+++..
T Consensus 95 ~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~ 174 (585)
T TIGR01192 95 AFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAK 174 (585)
T ss_pred HHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999988877777777777777777788889999998877766666666666
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.++.++..+...+..+++.+.+.|.++|+++||+|+.++.+.+++.+..+...+...+.............++..+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (585)
T TIGR01192 175 LVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISM 254 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777788889999999999999999999998888777776665544433322222222222222222222
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
.+.+++. +.+..|.++.+.+..++.+...+..++..+...+..+..+..+++|+.++++.+++... ........+.
T Consensus 255 ~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~~~~~~~~ 331 (585)
T TIGR01192 255 MCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PADAPELPNV 331 (585)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CccCCCCCCC
Confidence 2222222 23446788877777777777767777666777777888899999999998875433211 0010001112
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.++++||+|+|+++. ++++|+||++++||+++|+||||||||||+++|+|+|+|++|+|.+||+++++++.+++|+.
T Consensus 332 ~~~i~~~~v~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 410 (585)
T TIGR01192 332 KGAVEFRHITFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS 410 (585)
T ss_pred CCeEEEEEEEEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 34699999999998543 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCC-CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
++||||+|++|++|++||+.++ ++.++++++++++.+++++++.++|+|+||.+|++|.+|||||||||+|||||+++|
T Consensus 411 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p 490 (585)
T TIGR01192 411 IATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA 490 (585)
T ss_pred eEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999987 467899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
+++|||||||+||+++++.+.+.|.+..+++|+|+||||++.+..||+|++|++|++++.|+|+|++++ ++.|++++..
T Consensus 491 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~ 569 (585)
T TIGR01192 491 PILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFYKLLRR 569 (585)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC-CChHHHHHHh
Confidence 999999999999999999999999988788999999999999999999999999999999999999987 6889999987
Q ss_pred HhcCC
Q 011281 479 YTQRS 483 (489)
Q Consensus 479 ~~~~~ 483 (489)
+.-..
T Consensus 570 ~~~~~ 574 (585)
T TIGR01192 570 SGLLT 574 (585)
T ss_pred Ccccc
Confidence 65443
No 29
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.4e-78 Score=659.72 Aligned_cols=476 Identities=23% Similarity=0.317 Sum_probs=395.4
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
++++++++|..+|++.+.|++++|+++|++.++.++...+..++.+++.+++.+++++.++|.++++++...++.+++..
T Consensus 97 l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~ 176 (576)
T TIGR02204 97 VFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPIL 176 (576)
T ss_pred HHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999998887777777888888888888899999988766655454444455
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
++.++.++..+...+..+++.+.+.|.++|+++||.++.++++.+++.+..++..+...+......+......++..+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (576)
T TIGR02204 177 LFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAI 256 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777888899999999999999999999999988888777766554443333333333332222222222
Q ss_pred HHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFF-IISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
++.+++ ...+..|.++.+.+..+..+...+..++..+...+..+..+..+++|+.++++.+++.+... .. .....+.
T Consensus 257 ~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~-~~~~~~~ 334 (576)
T TIGR02204 257 VGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA-HP-KTLPVPL 334 (576)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC-CC-ccCCcCC
Confidence 222222 22344677887777777777777777777778888899999999999999987654321110 00 1111122
Q ss_pred CccEEEEEEEEEECCCC-CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 240 QGEVDIHGLQVRYAPHL-PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
.+.|+++||+|+|+++. +++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|.+||+++++++.+++|+
T Consensus 335 ~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 335 RGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred CceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHH
Confidence 35699999999998532 46999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
+|+|+||+|++|++|++|||++++ +.++++++++++.+++.++++++|+|+||++|++|.+|||||||||+||||++++
T Consensus 415 ~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~ 494 (576)
T TIGR02204 415 RMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494 (576)
T ss_pred hceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999864 5689999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
|+++|||||||+||+++++.+++.+++..+++|+|+||||++.+..||+|++|++|++++.|+|++++++ ++.|++++.
T Consensus 495 ~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~~ 573 (576)
T TIGR02204 495 APILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLAR 573 (576)
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHHHHh
Confidence 9999999999999999999999999988789999999999999999999999999999999999999986 688999876
Q ss_pred HH
Q 011281 478 EY 479 (489)
Q Consensus 478 ~~ 479 (489)
.+
T Consensus 574 ~~ 575 (576)
T TIGR02204 574 LQ 575 (576)
T ss_pred hc
Confidence 54
No 30
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=5.7e-79 Score=656.10 Aligned_cols=435 Identities=22% Similarity=0.284 Sum_probs=355.2
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-H
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWY-Q 79 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~-~ 79 (489)
++++++++|+.+|++.++|++++|+++|++.++..+...+..++.+++.+++.+++++.++|.+++++++.++++.++ .
T Consensus 92 ~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~ 171 (529)
T TIGR02868 92 VYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAP 171 (529)
T ss_pred HHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999988888888888888888888889999999988766554443332 2
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 011281 80 QYYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSII 159 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (489)
....+..++..++..+..+++.+.+.|.++|+++||+|+.++++.+++.+..+.+.+...+.............++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (529)
T TIGR02868 172 LVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLA 251 (529)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334455556667788999999999999999999999999888887777666554444333333333333333332
Q ss_pred HHHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCC
Q 011281 160 FVFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWP 238 (489)
Q Consensus 160 ~~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 238 (489)
..+.+++. +.+..|.++.+.+..++.+...+..+...+...+..++.+..+.+|+.++++.+++.+.. +...+....+
T Consensus 252 ~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~ 330 (529)
T TIGR02868 252 VLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEG-VVPAAGALGL 330 (529)
T ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCcccCC
Confidence 22222222 234467787776666666666676777667777888999999999999999765542211 0000100112
Q ss_pred CCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 239 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 239 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
..+.|+++||+|+|+++. ++|+|+||++++||+++||||||||||||+++|+|+|+|++|+|.+||+|++++ .+++|+
T Consensus 331 ~~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~ 408 (529)
T TIGR02868 331 GKPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRR 408 (529)
T ss_pred CCceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHh
Confidence 335699999999998654 599999999999999999999999999999999999999999999999999999 999999
Q ss_pred cceEEcCCCccCccchhhhcCCC-CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
+|+||||+|++|++||+|||+++ ++.++++++++++.+++++++.++|+||||+|||+|.+|||||||||+||||++++
T Consensus 409 ~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~ 488 (529)
T TIGR02868 409 RISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLAD 488 (529)
T ss_pred heEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999997 46799999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCc
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRI 438 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~ 438 (489)
|+|+|||||||+||+++|+.|++.+.+..+++|+|+||||+
T Consensus 489 ~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 489 APILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999888899999999995
No 31
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-80 Score=617.40 Aligned_cols=473 Identities=21% Similarity=0.319 Sum_probs=370.1
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVD---LSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIW 77 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~---~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~ 77 (489)
+|+|+.++++.|.-++++|+++.-+....+.+. ..++. +.+.+..+. +..+.+...++|+..+++++.+.+...
T Consensus 298 lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~-i~PtllDl~--va~vYF~~~Fn~wFgLIVfl~m~lY~~ 374 (790)
T KOG0056|consen 298 LFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQ-IGPTLLDLG--VAMVYFFIKFNIWFGLIVFLMMLLYCY 374 (790)
T ss_pred HHHHHHhhceeeeecccccceeehhccCcchhhHHHHHHhh-cccHHHHhh--hhhhhhhhhHhHHHHHHHHHHHHHHhh
Confidence 478999999999999999998887765554443 22222 222222221 222334456788887765543333222
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 011281 78 YQQYYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSS 157 (489)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (489)
.......-..+.++++..+..+....-.|++-+++++|-||++++..+++.+...+|.+...+.......++.....+..
T Consensus 375 ~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~ 454 (790)
T KOG0056|consen 375 VTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIG 454 (790)
T ss_pred eeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 11111111122233333333333445679999999999999999888888888888877666554433333333222222
Q ss_pred HHHHH-HHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCC
Q 011281 158 IIFVF-SLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCS 236 (489)
Q Consensus 158 ~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~ 236 (489)
+.... +++..+.+..+..+.+....+.+|+..+.+|+++.......+|+.+.-+++++++++.++|.. +.+...+-
T Consensus 455 lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVv---d~P~a~pl 531 (790)
T KOG0056|consen 455 LGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVV---DLPGAPPL 531 (790)
T ss_pred hHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhh---cCCCCCCc
Confidence 22111 111122334566666666778888888988888777777889999999999999997654421 22211111
Q ss_pred CCCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh
Q 011281 237 WPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL 316 (489)
Q Consensus 237 ~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 316 (489)
....+.|+|+||+|.|++.. ++|+||||++.||+.+|+|||||+||||++++|.|+|+.++|.|.+||+||+.....++
T Consensus 532 ~~~~G~i~fsnvtF~Y~p~k-~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 532 KVTQGKIEFSNVTFAYDPGK-PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred cccCCeEEEEEeEEecCCCC-ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHH
Confidence 12356899999999998765 59999999999999999999999999999999999999999999999999999999999
Q ss_pred hccceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc
Q 011281 317 RSRLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 395 (489)
Q Consensus 317 r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall 395 (489)
|++||.||||..||++||..||.+++ .+++|++.+|++.++++|-|..+|+||+|+|||+|-.||||||||+||||+++
T Consensus 611 Rs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred HHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 99999999999999999999999985 68999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 011281 396 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475 (489)
Q Consensus 396 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l 475 (489)
++|.|++|||+||+||..+|+.|+.++.+...++|.|+|+||++++-+||.|+|+++|+|+|.|+|+||+++++|.|++|
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~M 770 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADM 770 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHh
Q 011281 476 VAEYT 480 (489)
Q Consensus 476 ~~~~~ 480 (489)
|+.++
T Consensus 771 Wq~qq 775 (790)
T KOG0056|consen 771 WQAQQ 775 (790)
T ss_pred HHHHH
Confidence 96544
No 32
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-78 Score=611.35 Aligned_cols=471 Identities=22% Similarity=0.323 Sum_probs=361.4
Q ss_pred hhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 2 HFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVI-AVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 2 ~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~-~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
|++++++++++|.+..+|++.+.+......+..++...+..++-.++.+..+. .+....+...+++++........+..
T Consensus 114 f~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti 193 (591)
T KOG0057|consen 114 FRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTI 193 (591)
T ss_pred HHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEE
Confidence 67899999999999999999999988888888766555544443333222222 22223333333322211111111111
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.......+.+++...+.+.....+.|++.+-++||.||.|++..+++.....++.+...+.......+.+....++....
T Consensus 194 ~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~ 273 (591)
T KOG0057|consen 194 VVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVAL 273 (591)
T ss_pred eehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHH
Confidence 11112233444445555666778899999999999999999988888887777766555544444444444333333322
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
....++. .....+.++.+.+.....+..++..++..+......+.++..-+..++...+..... ...+.+....
T Consensus 274 ~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i-----~~~~~~i~~~ 348 (591)
T KOG0057|consen 274 TFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDI-----QEAALPIELF 348 (591)
T ss_pred HHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhh-----hhccCCcccC
Confidence 2222222 123445666666666777777777777777666677777766666555433211110 0001111224
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.++|+|+||+|+|+++. ++|+++||+|++||++||||+|||||||++++|+||++ ++|+|++||+++++++++++|+.
T Consensus 349 ~~~I~F~dV~f~y~~k~-~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~ 426 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGPKR-KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQS 426 (591)
T ss_pred CCcEEEEeeEEEeCCCC-ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhh
Confidence 56799999999998764 49999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
|||||||..||++||.+||.+++ .++++++.++|++++++|.+.++|+||+|.|||+|..|||||||||+||||+++||
T Consensus 427 Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 427 IGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred eeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence 99999999999999999999985 78999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
||+++|||||+||.+||+.+.+.+.+...++|+|+|.||++++++||+|+++++|++.|.|+|+||++ +++.|+++|..
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~ 585 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTT 585 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcc
Confidence 99999999999999999999999999888999999999999999999999999999999999999999 58889888875
Q ss_pred Hh
Q 011281 479 YT 480 (489)
Q Consensus 479 ~~ 480 (489)
+.
T Consensus 586 ~~ 587 (591)
T KOG0057|consen 586 QT 587 (591)
T ss_pred cc
Confidence 43
No 33
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5.7e-77 Score=640.56 Aligned_cols=445 Identities=20% Similarity=0.329 Sum_probs=367.0
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
++++++++|..+|++.++|++++|+++|++.++.++...+..++..++.+++.+++++.++|.++++++...++..++..
T Consensus 83 l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~ 162 (529)
T TIGR02857 83 LLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMI 162 (529)
T ss_pred HHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998887777777777777878888889999988766555444444444
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.++.++..++.....+++.+.+.|+++|+++||.|+.++++.+++.+..+++.+...+......+......++..+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (529)
T TIGR02857 163 LIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSV 242 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666667778889999999999999999999999988888877766655544433333333333333333322
Q ss_pred HHH-HHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFS-LFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~-~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
.+. ++..+....|.++.+.+..++.+...+..+...+...+..++.+..+.+|+.++++.+++... .. + ...+.
T Consensus 243 ~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~-~-~~~~~ 317 (529)
T TIGR02857 243 ALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KA-P-VTAAP 317 (529)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---Cc-C-CCCCC
Confidence 221 122222336777777666666666666666666777788899999999999999874432111 10 1 11112
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.|+++||+|+|++..+++|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|.+||+++++++.+++|++
T Consensus 318 ~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 318 APSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 34799999999998765569999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCC-CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
++||+|+|++|++|++||+.++ ++.++++++++++.++++++++++|+||||.+||+|.+||||||||++||||++++|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999986 457899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEE
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL 450 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 450 (489)
+++|||||||+||+++++.+++.+.+..+++|+|+||||+++++.||+|++|
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999887899999999999999999999985
No 34
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1e-74 Score=624.61 Aligned_cols=454 Identities=17% Similarity=0.187 Sum_probs=366.1
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIAS-NVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQ 79 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~-~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~ 79 (489)
+++|++++|+. ..+...+++++|++.++.++.. .+..++..++.++ .+++++.++|.++++++..+++++++.
T Consensus 85 ~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~ 158 (544)
T TIGR01842 85 IFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLA 158 (544)
T ss_pred HHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 36789999984 2366789999999999987765 3444444444443 446778899998876554444444444
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 011281 80 QYYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSII 159 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (489)
..+.+..++..++..+..+++.+.+.|+++|+++||.|+.++.+.+++.+..++..+...+.............++..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (544)
T TIGR01842 159 LLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVL 238 (544)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666677778889999999999999999999999988888877776655444333332222222222222222
Q ss_pred HHHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCC
Q 011281 160 FVFSLFF-IISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWP 238 (489)
Q Consensus 160 ~~~~~~~-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 238 (489)
..+.+++ .+.+..|.++.+.+..++.+...+..+...+......++.+..+.+|+.++++.+++.+. .. . . .+
T Consensus 239 ~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~-~-~-~~ 312 (544)
T TIGR01842 239 QSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AM-P-L-PE 312 (544)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CC-C-C-CC
Confidence 2222222 223446788888777777777777777777778888899999999999999876543211 10 1 0 11
Q ss_pred CCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 239 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 239 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
..+.++++||+|+|+++.+++|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|.+||+++.+++.+++|+
T Consensus 313 ~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 23469999999999865456999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
.++||||+|++|++|++||+.+++ +.++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||++++
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998654 5789999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
|+++|||||||+||+++++.+.+.+.+.. +++|+|+||||++.+..||+|++|++|++++.|+|+|+++
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999998875 5799999999999998999999999999999999999975
No 35
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-76 Score=580.22 Aligned_cols=471 Identities=21% Similarity=0.336 Sum_probs=383.2
Q ss_pred hhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 2 HFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQI-LGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 2 ~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~-l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
|.|+.++++.|.-++++|.+...+......++.+....+...+-.++-+ +.+++++..++|+.+++++..+++..++..
T Consensus 22 F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv 101 (497)
T COG5265 22 FFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTV 101 (497)
T ss_pred HHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhe
Confidence 6899999999999999998877666665556555444444433333333 334445567788877665544444333322
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
....-....++....+-+.....-.|++-+.+++|.|+.|+.+..++.+..+.|.+...+......++++....++....
T Consensus 102 ~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l 181 (497)
T COG5265 102 IVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGL 181 (497)
T ss_pred eehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 22222223344444555666778889999999999999999999999888899988877776666676665544443332
Q ss_pred HHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCC-
Q 011281 161 VFSLFF-IISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWP- 238 (489)
Q Consensus 161 ~~~~~~-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~- 238 (489)
...... ...+..|.++.+.....-.+...+..|+..+.....++.++...+++++++++.+.+... .+..+.-+|
T Consensus 182 ~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d---~pda~~L~~~ 258 (497)
T COG5265 182 RVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSD---APDAPPLWPV 258 (497)
T ss_pred HHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhcc---CCCCcccccc
Confidence 222221 123557788888888888888888888887777888999999999999999876554321 111111121
Q ss_pred CCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 239 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 239 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
..+.+.|.||+|.|.+.. ++|+++||++++|+++++|||||+||||++++|.|+|++++|.|.+||+|+++...+++|+
T Consensus 259 ~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~ 337 (497)
T COG5265 259 RLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRR 337 (497)
T ss_pred ccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHH
Confidence 235699999999998764 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
.||+||||..||++|+..|+.+++ +.+++++..+++.++++++|+.+|+||||.|||+|-.||||||||+||||+++++
T Consensus 338 aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~ 417 (497)
T COG5265 338 AIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred HhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence 999999999999999999999974 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
|+|++|||+||+||..||+.|+..|++...++|.++|+||++++.+||.|+||++|+|+|.|+|+||++. +|.|++||.
T Consensus 418 p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 418 PPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred CCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc-CChHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 899999974
No 36
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.7e-74 Score=669.33 Aligned_cols=476 Identities=18% Similarity=0.225 Sum_probs=382.4
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+|++++++|++||++.+.|++.+|+++|++.++..+...+..++..++++++.+++++.++|.+++++++++++++++..
T Consensus 136 ~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~ 215 (1466)
T PTZ00265 136 FLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGV 215 (1466)
T ss_pred HHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998888888888888999999999999999999887776676666666
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
++.++.++..+......++..+.+.|+++|+++||+|+.++++.+++.+..+.+.+...+.............++..+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 295 (1466)
T PTZ00265 216 ICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASY 295 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777889999999999999999999999988888877666655444433333332222333333333
Q ss_pred HHHHHHHH-HhcCC--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccC
Q 011281 161 VFSLFFII-SVPEG--------VVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEAS 231 (489)
Q Consensus 161 ~~~~~~~~-~~~~g--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~ 231 (489)
++.+|+.. .+..| .++.+.+..++.+..........+...+..++.+..+++|+.++++.+++.+.. ..
T Consensus 296 ~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~-~~- 373 (1466)
T PTZ00265 296 AFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENN-DD- 373 (1466)
T ss_pred HHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CC-
Confidence 33333322 12222 233333322222221111112223445677888999999999998765432210 00
Q ss_pred CCCCCCCCCccEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE-CCEeCC
Q 011281 232 RPNCSWPSQGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI-DGIDIS 309 (489)
Q Consensus 232 ~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~-~g~~~~ 309 (489)
. ...+....|+++||+|+|+.. ..++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+ ||.+++
T Consensus 374 -~-~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 374 -G-KKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLK 451 (1466)
T ss_pred -C-ccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchh
Confidence 0 111222479999999999853 235999999999999999999999999999999999999999999999 579999
Q ss_pred CCChHHhhccceEEcCCCccCccchhhhcCCCC-----------------------------------------------
Q 011281 310 SIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE----------------------------------------------- 342 (489)
Q Consensus 310 ~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~----------------------------------------------- 342 (489)
+++.+++|++|+||+|+|.+|++||+|||.++.
T Consensus 452 ~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (1466)
T PTZ00265 452 DINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDS 531 (1466)
T ss_pred hCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccch
Confidence 999999999999999999999999999998742
Q ss_pred -----------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 011281 343 -----------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 411 (489)
Q Consensus 343 -----------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD 411 (489)
+.++++++++++.+++++++.++|+||||.+|++|.+|||||||||+|||||+++|+|||||||||+||
T Consensus 532 ~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD 611 (1466)
T PTZ00265 532 NELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611 (1466)
T ss_pred hhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 245688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCC------------------------------------
Q 011281 412 TATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYG------------------------------------ 453 (489)
Q Consensus 412 ~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G------------------------------------ 453 (489)
+++++.+++.|.++. +++|+|+||||+++++.||+|++|++|
T Consensus 612 ~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1466)
T PTZ00265 612 NKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNN 691 (1466)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccccccc
Confidence 999999999999875 479999999999999999999999986
Q ss_pred -----------EEEEecChhHHhhcCCChHHHHHHHHh
Q 011281 454 -----------LIEEFDSPTRLLENKSSSFAQLVAEYT 480 (489)
Q Consensus 454 -----------~i~~~g~~~el~~~~~~~~~~l~~~~~ 480 (489)
+|+|+|+|+||++++++.|+.++..+.
T Consensus 692 ~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 692 NNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred ccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 599999999999855789999997653
No 37
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=9.2e-72 Score=602.12 Aligned_cols=448 Identities=18% Similarity=0.164 Sum_probs=350.1
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+++|++++|+.+|++.++|++++|+++|++.++.++.. +..++.+++++++.++++++++|.+++++++++++.+++..
T Consensus 92 l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~ 170 (555)
T TIGR01194 92 LCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQL 170 (555)
T ss_pred HHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998764 56667777778888888999999998876655555444444
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHH--HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVS--RFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSI 158 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (489)
+..++.++...+..+..+++.+.+.|.+.|++++|+|+.++ ...+++.+..+++.+.................++..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (555)
T TIGR01194 171 LAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFL 250 (555)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666777899999999999999999999853 3344455544444433322221111111111122111
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCC-CC---
Q 011281 159 IFVFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASR-PN--- 234 (489)
Q Consensus 159 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~-~~--- 234 (489)
...+.++ .....+.++.+.+..++.+...+..++..+...+..++.+..+++|+.++++.+++++...+.+. ..
T Consensus 251 ~~~~~~~--~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~ 328 (555)
T TIGR01194 251 LIGCALF--AAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLL 328 (555)
T ss_pred HHHHHHH--HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccc
Confidence 1111111 11123567777767777777777778877888889999999999999999754222111000000 00
Q ss_pred -CCCCCCccEEEEEEEEEECCC---CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 011281 235 -CSWPSQGEVDIHGLQVRYAPH---LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS 310 (489)
Q Consensus 235 -~~~~~~~~i~~~~v~~~y~~~---~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~ 310 (489)
......+.|+++||+|+|++. .+++|+|+||++++||+++||||||||||||+++|+|+|+|++|+|.+||+++++
T Consensus 329 ~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~ 408 (555)
T TIGR01194 329 LAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSA 408 (555)
T ss_pred cccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 000123569999999999753 2359999999999999999999999999999999999999999999999999999
Q ss_pred CChHHhhccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 311 IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 311 ~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
++.+++|++++||+|++++|++|+++|+ .++.++++++++++.+++++++..+|+||||. .+|||||||||+|
T Consensus 409 ~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlal 481 (555)
T TIGR01194 409 DSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLAL 481 (555)
T ss_pred CCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHH
Confidence 9999999999999999999999999996 34667899999999999999999999999995 7899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCceEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLG-QH-FSDCTVITIAHRITSVIDSDMVLLLSYGLIEEF 458 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~-~~-~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 458 (489)
|||++++|+++|||||||+||+++++.+++.+. .. .+++|+|+||||++++..||+|++|++|+|++.
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999988764 33 368999999999999999999999999999874
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.3e-71 Score=647.83 Aligned_cols=458 Identities=17% Similarity=0.222 Sum_probs=356.0
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQ-AGWQVFIAFIPVIAISIWYQ 79 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~-~~~~l~l~~~~~~~l~~~~~ 79 (489)
+++|+++++..++++.++|+++|++++|++.++.++ ..+..++..++.+++++++++. +.|.. ++.++++++++++.
T Consensus 380 i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~-l~~~~v~~l~~pl~ 457 (1495)
T PLN03232 380 IFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVAS-LFGSLILFLLIPLQ 457 (1495)
T ss_pred HHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999876 4455555555554444433322 11111 11112222223344
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 011281 80 QYYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSII 159 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (489)
..+.++..+.+++.+...+++.+.+.|.++|+++||+|++++.+.+++.+..+...+...+......+....... ...+
T Consensus 458 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~-~~~~ 536 (1495)
T PLN03232 458 TLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNS-IPVV 536 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 556667777778888888999999999999999999999999999888776655444333222211111111111 1111
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 160 FVFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 160 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
..+..+..+.+..|.++++.+..++.+...+..++..+...+..+.++..+++|+.++++.+++... .. +. ..+.
T Consensus 537 ~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~--~~--~~-~~~~ 611 (1495)
T PLN03232 537 VTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA--QN--PP-LQPG 611 (1495)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc--cc--CC-cCCC
Confidence 1111112223346778877777777777777777777777888999999999999999976543211 00 10 0112
Q ss_pred CccEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 240 QGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
...|+++|++|+|++. .+++|+|+||++++||+++||||||||||||+++|+|+++|++|.+. .+|+
T Consensus 612 ~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~ 679 (1495)
T PLN03232 612 APAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRG 679 (1495)
T ss_pred CCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecC
Confidence 3469999999999753 35699999999999999999999999999999999999999998763 3577
Q ss_pred cceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
+|+||+|+|++|++||||||.++.++++++++++++.|++.++++.+|+|++|.|||+|.+|||||||||+||||++++|
T Consensus 680 ~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~ 759 (1495)
T PLN03232 680 SVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNS 759 (1495)
T ss_pred cEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 399 KVLVLDEATASVDTATDNLIQHT-LGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
+||||||||||||+++++++.+. +....+++|+|+||||++.+..||+|++|++|+|+++|+|+|++++ ++.|++++.
T Consensus 760 ~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~-~~~~~~l~~ 838 (1495)
T PLN03232 760 DIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKKLME 838 (1495)
T ss_pred CEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc-chhHHHHHH
Confidence 99999999999999999988665 5556678999999999999999999999999999999999999986 677888876
Q ss_pred HH
Q 011281 478 EY 479 (489)
Q Consensus 478 ~~ 479 (489)
.+
T Consensus 839 ~~ 840 (1495)
T PLN03232 839 NA 840 (1495)
T ss_pred hc
Confidence 53
No 39
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-70 Score=646.18 Aligned_cols=457 Identities=17% Similarity=0.214 Sum_probs=357.0
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQ-AGWQVFIAFIPVIAISIWYQ 79 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~-~~~~l~l~~~~~~~l~~~~~ 79 (489)
+++|+++++..++++.++|+++|++++|++.++.++. .+..++..++.+++++++++. +.|. +++.+++++++++++
T Consensus 380 i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~-~l~g~~v~~l~~~l~ 457 (1622)
T PLN03130 380 VFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVA-SLIGSLMLVLMFPIQ 457 (1622)
T ss_pred HHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999998774 455555556555554444333 2222 122222233334445
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 011281 80 QYYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSII 159 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (489)
..+.++.++.+++.+...+++.+.+.|.++|+++||+|++++.+.+++.+..+...+...+......+....... ....
T Consensus 458 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~-~~~~ 536 (1622)
T PLN03130 458 TFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNS-IPVL 536 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 556666777777788888999999999999999999999999999888776655433222221111111111111 1111
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 160 FVFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 160 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
..+..+..+.+..|.++++.+..++.+...+..++..++..+..+.++..+++|+.++++.++..+. +. +.. .+.
T Consensus 537 v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~--~~--~~~-~~~ 611 (1622)
T PLN03130 537 VTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL--PN--PPL-EPG 611 (1622)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc--cC--Ccc-cCC
Confidence 1111122223346778877777666666666677766777788899999999999999875433211 00 100 112
Q ss_pred CccEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-ceEEECCEeCCCCChHHhh
Q 011281 240 QGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA-GLIAIDGIDISSIGLHDLR 317 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~r 317 (489)
.+.|+++|++|+|++. .+++|+|+||++++||+++||||||||||||+++|+|+++|++ |+|.+ |
T Consensus 612 ~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~ 678 (1622)
T PLN03130 612 LPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------R 678 (1622)
T ss_pred CCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------c
Confidence 3469999999999753 3468999999999999999999999999999999999999999 99974 5
Q ss_pred ccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 318 SRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
.+|+||+|+|++|++||||||.++.+.++++++++++.|++.++++.+|+|++|.|||+|.+|||||||||+||||++++
T Consensus 679 ~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 758 (1622)
T PLN03130 679 GTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSN 758 (1622)
T ss_pred CeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCC
Confidence 58999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHH-HHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQ-HTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 476 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~-~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~ 476 (489)
|+|||||||||+||+++++++. +++....+++|+|+|||+++.+..||+|++|++|+|+++|+|+|++++ .+.|++++
T Consensus 759 ~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~-~~~~~~l~ 837 (1622)
T PLN03130 759 SDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN-GPLFQKLM 837 (1622)
T ss_pred CCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc-chhHHHHH
Confidence 9999999999999999998875 456666688999999999999999999999999999999999999976 57788887
Q ss_pred HHH
Q 011281 477 AEY 479 (489)
Q Consensus 477 ~~~ 479 (489)
...
T Consensus 838 ~~~ 840 (1622)
T PLN03130 838 ENA 840 (1622)
T ss_pred Hhc
Confidence 653
No 40
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-68 Score=600.49 Aligned_cols=456 Identities=19% Similarity=0.247 Sum_probs=368.3
Q ss_pred hhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHH
Q 011281 2 HFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVIS-QAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 2 ~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~-~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
++|.++++-..-..+++|+++|.++.|+++++++.... ..++..++.+++++.+++ .+.|.. ++.+++++++++++.
T Consensus 282 Y~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~~l~lLy~~LG~sa-~~G~~~~il~~p~n~ 359 (1381)
T KOG0054|consen 282 YRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIILALYLLYGLLGPSA-LAGVAVMVLLIPLNS 359 (1381)
T ss_pred HHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHH
Confidence 67888888887788899999999999999999977644 445555666555554443 344433 333345566677788
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
+..++..+.+...+..++++...++|.++||+.||+|+||+.|.++..+..+...+.-.+. ................+.
T Consensus 360 ~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~-~~~~~~~~~~~~~~p~lv 438 (1381)
T KOG0054|consen 360 FLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKS-AYLSALNSFLNFFSPVLV 438 (1381)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999877666543322222 222222222222233333
Q ss_pred HHHHHHHHH-hcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFIIS-VPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~~~-~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
.++.+..+. ...+.+++..++..+++...+..++..++..+..+.++.+|++|+.+++..++..+..... ....+.
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~ 515 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAG 515 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCC
Confidence 333333333 3345667667777777777777777777888888999999999999999765543221110 111233
Q ss_pred CccEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 240 QGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
...++++|.+|+|+++ .++.|+||||+|++|+.+|||||.|||||||+.+|+|.++..+|+|.++|
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g------------- 582 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG------------- 582 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------
Confidence 4579999999999863 33499999999999999999999999999999999999999999999999
Q ss_pred cceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
.++||||+||+|+|||||||.|+.++++++++++++.|+|+++++.+|.|..|.|||+|.+|||||||||+||||+++|+
T Consensus 583 siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~a 662 (1381)
T KOG0054|consen 583 SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDA 662 (1381)
T ss_pred eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 399 KVLVLDEATASVDTATDNLIQH-TLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
+|++||+|.||+|+++.++|++ +|+...++||+|+|||.++.+++||+|++|++|+|++.|+|+||++. +..|.++..
T Consensus 663 dIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~-~~~~~~l~~ 741 (1381)
T KOG0054|consen 663 DIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS-GGDFAELAH 741 (1381)
T ss_pred CEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc-chhHHHHhh
Confidence 9999999999999998776654 56667789999999999999999999999999999999999999976 677877753
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=8.9e-68 Score=570.69 Aligned_cols=446 Identities=16% Similarity=0.206 Sum_probs=334.1
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
++++++++|+++|+++++|++++|+++|++.+..++. .+..++.+++.+++.+++++.++|.+++++++.+++.+++..
T Consensus 87 l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~ 165 (547)
T PRK10522 87 FIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGF 165 (547)
T ss_pred HHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999988655 455677778888888888999999999877666665555556
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhH---HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQV---SRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSS 157 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (489)
++.++.++..++..+..+++.+.+.|.++|+++++ ++.+ +.+.+++.+..++..+...+..............+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (547)
T PRK10522 166 VLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMML 244 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 66666666777777888999999999999999996 4332 3455555555554443322221111111111111111
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCC
Q 011281 158 IIFVFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSW 237 (489)
Q Consensus 158 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~ 237 (489)
+. +++++......+....+.+..+..+...+..++..+...+..++.+..+.+|+.++.+.+++++. +. .. ..
T Consensus 245 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~--~~--~~-~~ 317 (547)
T PRK10522 245 GA--IGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF--PR--PQ-AF 317 (547)
T ss_pred HH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc--cc--cc-cc
Confidence 11 11111111111111112222222233334445556667777888999999999998754432110 01 10 01
Q ss_pred CCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhh
Q 011281 238 PSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR 317 (489)
Q Consensus 238 ~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r 317 (489)
+..+.++++||+|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|.+||+++++++.+++|
T Consensus 318 ~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 396 (547)
T PRK10522 318 PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYR 396 (547)
T ss_pred CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHh
Confidence 123469999999999854 3599999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 318 SRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
++++||+|++++|++|+++| +++.++++++++++.+++.+++.. ++|. .+|.+||||||||++||||++++
T Consensus 397 ~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~ 467 (547)
T PRK10522 397 KLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEE 467 (547)
T ss_pred hheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999 346678889999999998877653 4332 24889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCEEEEe-cChhHHh
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEF-DSPTRLL 465 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~-g~~~el~ 465 (489)
|+++|||||||+||+++++.+.+.+.+.. +++|+|+||||++.++.||+|++|++|+++|. |++.+-.
T Consensus 468 ~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~~~ 538 (547)
T PRK10522 468 RDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAA 538 (547)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchhhh
Confidence 99999999999999999999999987543 47999999999999999999999999999985 5555444
No 42
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.2e-65 Score=600.38 Aligned_cols=459 Identities=18% Similarity=0.220 Sum_probs=354.5
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQ-AGWQVFIAFIPVIAISIWYQ 79 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~-~~~~l~l~~~~~~~l~~~~~ 79 (489)
+|+|+++++..++++.++|+++|++++|++.+..+. ..+..++..++.+++++++++. ..|. +++.+.++++++++.
T Consensus 397 iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~-~l~~l~~~~~~~~~~ 474 (1522)
T TIGR00957 397 VYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPS-VLAGVAVMVLMVPLN 474 (1522)
T ss_pred HHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999998755 3455555555555544444332 2332 222222333444455
Q ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 011281 80 QYYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSII 159 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (489)
..+.+..++.+++.+...+++.+.+.|.++|+++||++++|+.+.+++.+..+...+............. ........+
T Consensus 475 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~-~~~~~~~~~ 553 (1522)
T TIGR00957 475 AVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGT-FTWVCTPFL 553 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 5566677778888888899999999999999999999999999988887766554433222221111111 111111111
Q ss_pred HHHHHHHHHHhc--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCC
Q 011281 160 FVFSLFFIISVP--EGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSW 237 (489)
Q Consensus 160 ~~~~~~~~~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~ 237 (489)
..+..+..+.+. .+.++++.+...+.+...+..++..+...+..+.++..+++|+.++++.+++++...+. .....
T Consensus 554 ~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~--~~~~~ 631 (1522)
T TIGR00957 554 VALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIER--RTIKP 631 (1522)
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccc--cccCC
Confidence 111111112221 24456555555555555666677777788889999999999999999765432211000 00000
Q ss_pred CCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhh
Q 011281 238 PSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR 317 (489)
Q Consensus 238 ~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r 317 (489)
.....++++|++|+|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 632 ~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------ 699 (1522)
T TIGR00957 632 GEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------ 699 (1522)
T ss_pred CCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------------
Confidence 11236999999999986545699999999999999999999999999999999999999999999987
Q ss_pred ccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 318 SRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
+|+||+|+|++|++||+|||.++.+.++++++++++.|++.+++..+|+|++|.+|++|.+||||||||++||||++++
T Consensus 700 -~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~ 778 (1522)
T TIGR00957 700 -SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 778 (1522)
T ss_pred -EEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 5999999999999999999999877788889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHH---hcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQ---HFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 474 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~---~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~ 474 (489)
|+++|||||||+||+++++.+.+.+.. ..+++|+|+|||+++.+..||+|++|++|+|++.|+++|+.++ ++.|++
T Consensus 779 ~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~~~~ 857 (1522)
T TIGR00957 779 ADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR-DGAFAE 857 (1522)
T ss_pred CCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc-chhHHH
Confidence 999999999999999999999998853 3468999999999999999999999999999999999999976 567888
Q ss_pred HHHH
Q 011281 475 LVAE 478 (489)
Q Consensus 475 l~~~ 478 (489)
++..
T Consensus 858 l~~~ 861 (1522)
T TIGR00957 858 FLRT 861 (1522)
T ss_pred HHHh
Confidence 7763
No 43
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.3e-66 Score=520.50 Aligned_cols=431 Identities=20% Similarity=0.220 Sum_probs=330.7
Q ss_pred HhHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhchHHH
Q 011281 27 SDQSTVDLSIAS-NVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAIS---IWYQQYYLPSARELSRLVGVSKAPVIQ 102 (489)
Q Consensus 27 ~D~~~i~~~~~~-~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (489)
+|.++++.|+.. .+..++....+++ ++.++|.+++++.++.+...+++ .+++.+.. ++-.+...+.....+.
T Consensus 124 rDL~qvR~Fltg~g~~A~fDaPW~P~-yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t---~~p~~eA~~~~~~~~~ 199 (580)
T COG4618 124 RDLDQVRQFLTGTGLTAFFDAPWMPL-YLAVIFLFHPWLGLIALAGAIILVVLALLNERAT---RKPLKEASEASIRANQ 199 (580)
T ss_pred hhHHHHHHHHcCCCcchhcCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHH
Confidence 688889888754 4444555555555 44455666677666544333333 23333322 2223333344456667
Q ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCcccHHHHH
Q 011281 103 HFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSL-FFIISVPEGVVDPAIAG 181 (489)
Q Consensus 103 ~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~~~~ 181 (489)
...-+.++.++|++.+......+++.+....+...+....-....+......+-++.-...+ +..+.+..|.+++++..
T Consensus 200 ~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mI 279 (580)
T COG4618 200 LADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMI 279 (580)
T ss_pred HHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhh
Confidence 88889999999999998877776666555554433322222122222222222222111111 11123456788877655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCccEEEEEEEEEECCCCCccee
Q 011281 182 LAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLR 261 (489)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~ 261 (489)
...........|+...+..+..+..++.+.+|+.+++...+.....- .-..+.+.+.++++++.=|+.++++++
T Consensus 280 A~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m------~LP~P~g~L~Ve~l~~~PPg~~~pil~ 353 (580)
T COG4618 280 AGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERM------PLPAPQGALSVERLTAAPPGQKKPILK 353 (580)
T ss_pred HHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCC------CCCCCCceeeEeeeeecCCCCCCccee
Confidence 44444444455666677888999999999999999987544322111 111234679999999977777778999
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcC-C
Q 011281 262 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD-P 340 (489)
Q Consensus 262 ~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~-~ 340 (489)
++||++++||.++||||||||||||.|+|.|.++|.+|.|.+||-+++.++.+++-++|||+||+..||+|||+|||+ |
T Consensus 354 ~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf 433 (580)
T COG4618 354 GISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARF 433 (580)
T ss_pred cceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999995 6
Q ss_pred CCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 011281 341 LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 420 (489)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~ 420 (489)
.++.+++++.+|++.++.+|.|.++|+||||.||++|..|||||||||+|||||+.||.+++||||-|+||.+-|..+.+
T Consensus 434 ~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~ 513 (580)
T COG4618 434 GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAA 513 (580)
T ss_pred cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHH
Confidence 66889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 011281 421 TLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 421 ~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
+|...+ +|.|+|+||||++.+..+|+|++|++|++...|+.+|++++
T Consensus 514 Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 514 AILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 998765 68999999999999999999999999999999999999875
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.8e-62 Score=574.85 Aligned_cols=451 Identities=18% Similarity=0.233 Sum_probs=347.2
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+|+|+++++...+++.++|+++|++++|++.+...+... ..++..++.+++++++++....+.+++.+.+++++++++.
T Consensus 161 iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~ 239 (1490)
T TIGR01271 161 IYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQA 239 (1490)
T ss_pred HHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999876544 3444555655555555544333344444444455556666
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
++.+...+.++..+...+++.+.+.|.++|++.||+|++|+.|.+++.+..+...+..........+.. ........+.
T Consensus 240 ~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~-~~~~~~~~~~ 318 (1490)
T TIGR01271 240 CLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYS-SAFFFSGFFV 318 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 777778888888889999999999999999999999999999998887766554333222221111111 1111112111
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQ-ASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
.+..+..+.+..+ .+++.++.++++...+..+. ..++..+..+.++.++++||.+++..++.++. . .. ..
T Consensus 319 ~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~----~-~~---~~ 389 (1490)
T TIGR01271 319 VFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL----E-YN---LT 389 (1490)
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc----c-cc---CC
Confidence 1111212222222 34444444444444444443 34666777888999999999999976543211 0 00 11
Q ss_pred CccEEEEEEEEEECCC--------------------------------CCcceeeeeEEeeCCCEEEEECCCCCcHHHHH
Q 011281 240 QGEVDIHGLQVRYAPH--------------------------------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLI 287 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~--------------------------------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~ 287 (489)
...++++|++|.|+.. .+++|+|+||+|++|++++|+||||||||||+
T Consensus 390 ~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl 469 (1490)
T TIGR01271 390 TTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLL 469 (1490)
T ss_pred CCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHH
Confidence 2358889999988531 13589999999999999999999999999999
Q ss_pred HHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccc
Q 011281 288 QTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEG 367 (489)
Q Consensus 288 ~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~ 367 (489)
++|+|+++|++|+|.++| .|+|++|+|++|++||+|||.++...+++++.++++.|++.+++..+|+
T Consensus 470 ~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~ 536 (1490)
T TIGR01271 470 MMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPE 536 (1490)
T ss_pred HHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccc
Confidence 999999999999999998 4999999999999999999998876777788899999999999999999
Q ss_pred cccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCceEEEEecCchhhhhcCE
Q 011281 368 KLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT-LGQHFSDCTVITIAHRITSVIDSDM 446 (489)
Q Consensus 368 gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~ 446 (489)
|++|.+|++|.+|||||||||+||||++++|+++|||||||+||+++++++++. +....+++|+|+|||+++.+..||+
T Consensus 537 g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ 616 (1490)
T TIGR01271 537 KDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADK 616 (1490)
T ss_pred cccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCE
Confidence 999999999999999999999999999999999999999999999999999974 6666678999999999999999999
Q ss_pred EEEEeCCEEEEecChhHHhhcCCChHHHHH
Q 011281 447 VLLLSYGLIEEFDSPTRLLENKSSSFAQLV 476 (489)
Q Consensus 447 i~~l~~G~i~~~g~~~el~~~~~~~~~~l~ 476 (489)
|++|++|+|++.|+++++.+. +..|...+
T Consensus 617 ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~ 645 (1490)
T TIGR01271 617 ILLLHEGVCYFYGTFSELQAK-RPDFSSLL 645 (1490)
T ss_pred EEEEECCEEEEEcCHHHHHhc-ChHHHHHH
Confidence 999999999999999999875 45566555
No 45
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.1e-61 Score=529.18 Aligned_cols=432 Identities=14% Similarity=0.084 Sum_probs=336.8
Q ss_pred HHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 011281 4 CLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQ-AGWQVFIAFIPVIAISIWYQQYY 82 (489)
Q Consensus 4 ~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~-~~~~l~l~~~~~~~l~~~~~~~~ 82 (489)
++...++.+|++ ++|++.+|+++|++.+...+...+..++.+++.++++++.++. ++|.+++++++..++.+++.+++
T Consensus 181 ~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~ 259 (659)
T TIGR00954 181 GFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKL 259 (659)
T ss_pred CCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 344556667776 7899999999999999999988888888888888877776665 99999887777777777778888
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH-HH
Q 011281 83 LPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSII-FV 161 (489)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 161 (489)
.++..+..+..++..+++.+.+.|.++|+++||.|+.++...+++.+..++..+...+......+......++.... ..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 339 (659)
T TIGR00954 260 RPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSA 339 (659)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999988888777766665554444444444444443332211 11
Q ss_pred HHH-HHHH--Hh----cCCcccHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-----
Q 011281 162 FSL-FFII--SV----PEGVVDPAIAG-LAVTF---GLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPP----- 225 (489)
Q Consensus 162 ~~~-~~~~--~~----~~g~i~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~----- 225 (489)
+.. +... .. ..|.++.+... .++.+ ...+..++..+......++++..+.+|+.++++.+++..
T Consensus 340 ~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~ 419 (659)
T TIGR00954 340 VGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFK 419 (659)
T ss_pred HHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 111 1111 11 12556554332 23433 233455555667778889999999999999986432210
Q ss_pred --cccccCC-------------CCCCCCCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHH
Q 011281 226 --LVIEASR-------------PNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTL 290 (489)
Q Consensus 226 --~~~~~~~-------------~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l 290 (489)
...+... ........+.|+++||+|+|+++ +++|+|+||++++||+++|+||||||||||+++|
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL 498 (659)
T TIGR00954 420 RPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRIL 498 (659)
T ss_pred ccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 0000000 00000123469999999999754 3599999999999999999999999999999999
Q ss_pred hcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCC--------CCcHHHHHHHHHHcCCcHHH
Q 011281 291 FRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE--------EYADEEIWEALDKCQLGNEV 362 (489)
Q Consensus 291 ~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~--------~~~~~~~~~~~~~~~l~~~i 362 (489)
+|+++|++|+|.+++ |+.++||||+|++|++|++||+.++. +.++++++++++.+++.+++
T Consensus 499 ~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~ 567 (659)
T TIGR00954 499 GELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHIL 567 (659)
T ss_pred hCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHH
Confidence 999999999998764 56899999999999999999998742 34678899999999999998
Q ss_pred HhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhh
Q 011281 363 RKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 442 (489)
Q Consensus 363 ~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 442 (489)
++ |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++. ++|+|+||||++.++
T Consensus 568 ~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~ 643 (659)
T TIGR00954 568 ER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWK 643 (659)
T ss_pred hh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHH
Confidence 87 999999986 57799999999999999999999999999999999999999999999764 899999999999999
Q ss_pred hcCEEEEEeC
Q 011281 443 DSDMVLLLSY 452 (489)
Q Consensus 443 ~~d~i~~l~~ 452 (489)
.||+|++|++
T Consensus 644 ~~d~il~l~~ 653 (659)
T TIGR00954 644 YHEYLLYMDG 653 (659)
T ss_pred hCCEEEEEeC
Confidence 9999999974
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.3e-59 Score=552.94 Aligned_cols=461 Identities=19% Similarity=0.217 Sum_probs=356.4
Q ss_pred ChhHHhcCCccccc--ccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFD--ATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWY 78 (489)
Q Consensus 1 ~~~~ll~~~~~~f~--~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~ 78 (489)
+|+|+++++...+. +.++|+++|++++|++.+..++.. +..++..++.+++++++++.+-.+++++.++++++++++
T Consensus 324 if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl 402 (1560)
T PTZ00243 324 IFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPL 402 (1560)
T ss_pred HHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 47899999988776 568899999999999999998754 445666677666655555544334444444455566667
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 011281 79 QQYYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSI 158 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (489)
+.++.++..+.+++.....+++.+.+.|.++|++.||.+++|+.|.+++.+..+...+...+......+..+ +......
T Consensus 403 ~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~-~~~~~p~ 481 (1560)
T PTZ00243 403 NGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSF-VNNATPT 481 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 777888888888888899999999999999999999999999999999887665544332222222222221 1111222
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc---cc-c-----
Q 011281 159 IFVFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPL---VI-E----- 229 (489)
Q Consensus 159 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~---~~-~----- 229 (489)
+..++.+..+.+..+.++++.++.++++...+..++..++..+..+.++.+|++||.++++.++.... .. +
T Consensus 482 l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~ 561 (1560)
T PTZ00243 482 LMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQ 561 (1560)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcccc
Confidence 22222222333446778888888888887777778777888888999999999999999976541100 00 0
Q ss_pred -------c-----CC-------C---------------------------CCCCCCCccEEEEEEEEEECC---------
Q 011281 230 -------A-----SR-------P---------------------------NCSWPSQGEVDIHGLQVRYAP--------- 254 (489)
Q Consensus 230 -------~-----~~-------~---------------------------~~~~~~~~~i~~~~v~~~y~~--------- 254 (489)
. .+ + .......+.+.++|++|.++.
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1560)
T PTZ00243 562 REHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEG 641 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccc
Confidence 0 00 0 000001234677787776431
Q ss_pred -----------------------------CCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 011281 255 -----------------------------HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 305 (489)
Q Consensus 255 -----------------------------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 305 (489)
..+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~- 720 (1560)
T PTZ00243 642 GTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE- 720 (1560)
T ss_pred cccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-
Confidence 12348999999999999999999999999999999999999999999863
Q ss_pred EeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 306 IDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 306 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
+.|+|++|+|++|++|++|||.++.+.+.+++.++++.|++.++++.+|+|++|.+|++|.+||||||
T Consensus 721 ------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQk 788 (1560)
T PTZ00243 721 ------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQK 788 (1560)
T ss_pred ------------CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHH
Confidence 47999999999999999999999766667788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT-LGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el 464 (489)
|||+||||++.+|+++|||||||+||+.+.+.+.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+++++
T Consensus 789 qRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l 868 (1560)
T PTZ00243 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADF 868 (1560)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999988887764 4444468999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHH
Q 011281 465 LENKSSSFAQLVAE 478 (489)
Q Consensus 465 ~~~~~~~~~~l~~~ 478 (489)
++. +.|..+...
T Consensus 869 ~~~--~~~~~~~~~ 880 (1560)
T PTZ00243 869 MRT--SLYATLAAE 880 (1560)
T ss_pred HhC--hHHHHHHHh
Confidence 874 457766653
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.1e-56 Score=437.63 Aligned_cols=235 Identities=35% Similarity=0.647 Sum_probs=221.0
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.+||.++..++..++|+.|+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 589999999997555569999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred EEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEE
Q 011281 322 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 401 (489)
Q Consensus 322 ~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~il 401 (489)
|+||+|.+|++|+++|+.+....++++++++++.+++.+++.++|.+++|.++++|.+||||||||++||||++++|+|+
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999765556788999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 402 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 402 llDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
||||||++||+.+.+.+++.|.+...++|+|+|||+++.+..||||++|++|+|++.|++++|+++ .+.|++++.+
T Consensus 161 llDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 161 LLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred EEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999987778999999999999999999999999999999999999986 4677777754
No 48
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-55 Score=402.83 Aligned_cols=223 Identities=27% Similarity=0.421 Sum_probs=198.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC-CChHHhhccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS-IGLHDLRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~-~~~~~~r~~i 320 (489)
.|+++||+.+|++. .+|+|||++|++||.++|+||||||||||++||.+|-+|++|+|.+||.++.. .+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 37899999999754 59999999999999999999999999999999999999999999999987743 3678899999
Q ss_pred eEEcCCCccCc-cchhhhcCCCC----CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 321 SIIPQDPTMFE-GSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 321 ~~v~Q~~~lf~-~ti~~Ni~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
|+|+|+..||+ -|+.||+.+++ ..+ +++..+.|+++||.+..+..|.. ||||||||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~q-----------LSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQ-----------LSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccc-----------cCcHHHHHHHHH
Confidence 99999999997 59999998753 223 34567789999999998888754 599999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 469 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~ 469 (489)
|||+-+|+++++|||||||||+....+.+.++++. .|.|+|+|||.+.+++. ||||+.|++|+|+++|+++++..++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999999999999999999999999999998865 57899999999999998 89999999999999999999998865
Q ss_pred Ch-HHHHHH
Q 011281 470 SS-FAQLVA 477 (489)
Q Consensus 470 ~~-~~~l~~ 477 (489)
.. .++++.
T Consensus 229 ~~R~~~FL~ 237 (240)
T COG1126 229 SERTRQFLS 237 (240)
T ss_pred CHHHHHHHH
Confidence 43 444443
No 49
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-53 Score=394.75 Aligned_cols=217 Identities=26% Similarity=0.430 Sum_probs=197.0
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+|+|||++|.+ +.+++|+||+|++||+++++|||||||||++|+|.|+++|++|+|++||+++++++.-++|++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 789999999974 359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccCc-cchhhhcCCCC---CCc----HHHHHHHHHHcCCcH--HHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 323 IPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGN--EVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~--~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
|-|..-||+ .||.|||..-+ .++ ++++.+.++.+||+. |.++.|+. |||||+||+.+||
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~e-----------LSGGQQQRVGv~R 148 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHE-----------LSGGQQQRVGVAR 148 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchh-----------cCcchhhHHHHHH
Confidence 999999997 59999997532 344 456788999999974 78887764 5999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 469 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~ 469 (489)
||+.+|+|+++|||++||||.++..+++.+.+.. -++|+|+|||+++.+-. +|||.+|++|+|++.|+++|++++|.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 9999999999999999999999999999987643 38999999999998765 99999999999999999999999875
Q ss_pred ChH
Q 011281 470 SSF 472 (489)
Q Consensus 470 ~~~ 472 (489)
..|
T Consensus 229 n~F 231 (309)
T COG1125 229 NDF 231 (309)
T ss_pred HHH
Confidence 555
No 50
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-53 Score=385.26 Aligned_cols=220 Identities=26% Similarity=0.430 Sum_probs=200.2
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-----ceEEECCEeCCC--CCh
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA-----GLIAIDGIDISS--IGL 313 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~-----G~i~~~g~~~~~--~~~ 313 (489)
..++++||++.|+.. .+|+|||++|++++++|++|||||||||+++++.++.+..+ |+|.++|+++.+ .+.
T Consensus 6 ~~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 358999999999754 59999999999999999999999999999999999998876 999999999976 468
Q ss_pred HHhhccceEEcCCCccCccchhhhcCCCCC-------CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 314 HDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 314 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~-------~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
..+|+.||+|+|.|..|+.||+||+.++.. .-++.++++++.+.|++.+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 899999999999999999999999988631 124568999999999998753 446778889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
||||||||+-+|+||+||||||+|||.+..+|.+.|.+++++-|+|+|||+++-+.+ +|+...+..|+++|.|+.+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999998888899999999998887 8999999999999999999999
Q ss_pred hcCC
Q 011281 466 ENKS 469 (489)
Q Consensus 466 ~~~~ 469 (489)
.+|.
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 8764
No 51
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-52 Score=401.82 Aligned_cols=224 Identities=24% Similarity=0.380 Sum_probs=198.0
Q ss_pred EEEEEEEEEECCC---CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---h
Q 011281 243 VDIHGLQVRYAPH---LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---L 316 (489)
Q Consensus 243 i~~~~v~~~y~~~---~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 316 (489)
|++++|++.|+.. ...+++||||+|++||+++|+|+||||||||++++.++-.|++|+|.+||+++..++... .
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999763 235899999999999999999999999999999999999999999999999998887554 6
Q ss_pred hccceEEcCCCccCc-cchhhhcCCC---CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH
Q 011281 317 RSRLSIIPQDPTMFE-GSVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388 (489)
Q Consensus 317 r~~i~~v~Q~~~lf~-~ti~~Ni~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl 388 (489)
|++||+++|++.|++ .|+++|+.|. ...+ .+++.+.++.+||.++.++-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 788999999999998 6999999873 1233 356788999999999887766 46799999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 389 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 389 ~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
+|||||+.+|+||+.|||||||||+|.+.|.+.|++.. -|-|+++|||.|+.++. |||+.||++|+|+|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998753 47899999999999998 9999999999999999999999
Q ss_pred hcCCCh-HHHHHH
Q 011281 466 ENKSSS-FAQLVA 477 (489)
Q Consensus 466 ~~~~~~-~~~l~~ 477 (489)
.+|... -++++.
T Consensus 231 ~~Pk~~~t~~fi~ 243 (339)
T COG1135 231 ANPKHAITQEFIG 243 (339)
T ss_pred cCcchHHHHHHHH
Confidence 886433 344444
No 52
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-51 Score=416.30 Aligned_cols=226 Identities=24% Similarity=0.384 Sum_probs=200.3
Q ss_pred CCCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC-
Q 011281 237 WPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS- 310 (489)
Q Consensus 237 ~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~- 310 (489)
++..+.|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 75 ~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 45566899999999997544569999999999999999999999999999999999996 579999999999973
Q ss_pred -CChHHhhccceEEcCCCccCccchhhhcCCCC---CCcHHH-----HHHHHHHcCCcHHHHhccccccchhhcCCCCCC
Q 011281 311 -IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EYADEE-----IWEALDKCQLGNEVRKNEGKLESRVTENGENWS 381 (489)
Q Consensus 311 -~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~~~~~-----~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LS 381 (489)
.+...+|+.++||||+|++|++|+++|+.++. ..++++ +.++++.+++.+ ++++.++++|.+||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~l~~~~~~~~~~LS 227 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-------EVKDDLDKAGNALS 227 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-------hhhhhhhCCcccCC
Confidence 34567889999999999999999999998643 233322 566788887654 45678899999999
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 460 (489)
||||||++||||++++|+||||||||++||+.+.+.+.+.|....+++|+|+|||+++++.. ||||++|++|+|++.|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988778999999999999988 99999999999999999
Q ss_pred hhHHhhcCC
Q 011281 461 PTRLLENKS 469 (489)
Q Consensus 461 ~~el~~~~~ 469 (489)
++++...+.
T Consensus 308 ~~~l~~~~~ 316 (329)
T PRK14257 308 TKTIFIHPK 316 (329)
T ss_pred HHHHhcCCC
Confidence 999987643
No 53
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3e-51 Score=401.11 Aligned_cols=240 Identities=51% Similarity=0.803 Sum_probs=220.4
Q ss_pred CCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 239 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 239 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
..+.|+++|++++|++....+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35679999999999764346999999999999999999999999999999999999999999999999998888888899
Q ss_pred cceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
.++|++|++.+|++|+++|+.+......+++.++++.+++.+++..+|.|+++.+++.+.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999765434466788899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
+++||||||++||+.+++.+.+.+.+..++.|+|++||+++.+..||||++|++|++++.|+++++.+...+.|++++..
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 99999999999999999999999988767899999999999999999999999999999999999987656677777653
No 54
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.5e-51 Score=396.01 Aligned_cols=234 Identities=29% Similarity=0.472 Sum_probs=213.8
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 46899999997543469999999999999999999999999999999999999999999999999987777788889999
Q ss_pred EcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEE
Q 011281 323 IPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 401 (489)
Q Consensus 323 v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~il 401 (489)
++|++.+|+.|++||+.+.. ....+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++.+|+++
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999998753 34456777888889999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 402 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 402 llDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
||||||++||+.+.+.+.+.|.+..+++|+|++||+++.+..||+|++|++|++++.|+++++.++ .+.|+.++.
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 999999999999999999999887678999999999999988999999999999999999999876 566766543
No 55
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.5e-50 Score=385.88 Aligned_cols=219 Identities=58% Similarity=0.958 Sum_probs=205.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.++++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 48999999999754446999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEE
Q 011281 322 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 401 (489)
Q Consensus 322 ~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~il 401 (489)
|++|++.+|+.|++||+.+......+++.++++.+++.+++.++|.|+++.+++...+||||||||++||||++++|+++
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999876556678889999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 011281 402 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 402 llDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 460 (489)
||||||++||+.+++.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999998766789999999999998999999999999998876
No 56
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-50 Score=386.91 Aligned_cols=231 Identities=31% Similarity=0.483 Sum_probs=211.1
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|++++|++...++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 46899999997543358999999999999999999999999999999999999999999999999987777788889999
Q ss_pred EcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEE
Q 011281 323 IPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 401 (489)
Q Consensus 323 v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~il 401 (489)
++|++.+|+.|++||+.++. ....+++.+.++.+++.++++.+|.|+++.++.....||||||||++|||||+++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998753 34556778888999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 011281 402 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 474 (489)
Q Consensus 402 llDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~ 474 (489)
||||||++||+.+.+.+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|+.+++.+. .+.|+.
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~ 232 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAK 232 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhh
Confidence 999999999999999999999987778999999999999988999999999999999999999876 444543
No 57
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-50 Score=399.80 Aligned_cols=216 Identities=25% Similarity=0.404 Sum_probs=195.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+++|++.. +++|+||+|++||+++|+|||||||||||++|+||.+|++|+|.|||.++++++++ .+.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KRGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HCCEE
Confidence 589999999997542 89999999999999999999999999999999999999999999999999999886 58899
Q ss_pred EEcCCCccCcc-chhhhcCCCC-------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLE-------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~-------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
+|+|+..||+. ||+|||.|+- +..++++.++++..++.+.+++.|.. ||||||||+|||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~-----------LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQ-----------LSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCccc-----------CChhhHHHHHHHHH
Confidence 99999999975 9999998852 12356889999999999999998865 49999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 470 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~ 470 (489)
|+++|++++||||+|+||+..+..+...|+++. -+.|+|+|||+...+.. +|||.||.+|+|.+.|++.|+.+++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 999999999999999999999999999988743 36899999999888776 999999999999999999999988655
Q ss_pred hH
Q 011281 471 SF 472 (489)
Q Consensus 471 ~~ 472 (489)
.|
T Consensus 228 ~f 229 (338)
T COG3839 228 LF 229 (338)
T ss_pred hh
Confidence 44
No 58
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-49 Score=385.00 Aligned_cols=233 Identities=33% Similarity=0.541 Sum_probs=212.5
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|++++|++. ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999643 348999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEE
Q 011281 323 IPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 401 (489)
Q Consensus 323 v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~il 401 (489)
++|++.+|+.|++||+.++. ..+++++.++++.+++.+++..+|.|+++.+.....+||||||||++|||||+++|+++
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998753 34566778889999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 402 VLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 402 llDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
||||||++||+.+.+.+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|+.+++... .+.|+.++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~ 234 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWK 234 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHh
Confidence 999999999999999999999887668899999999999988999999999999999999998875 455655543
No 59
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-49 Score=383.51 Aligned_cols=225 Identities=36% Similarity=0.568 Sum_probs=208.5
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++|++++|++. +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 2 ~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 58999999999743 34899999999999999999999999999999999999999999999999998877778889999
Q ss_pred EEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCE
Q 011281 322 IIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 400 (489)
Q Consensus 322 ~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~i 400 (489)
|++|++.+|++|++||+.+.. ....+++.++++.+++.++++.+|.|+++.++.....||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999998753 3456778888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 011281 401 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 401 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
+||||||++||+.+.+.+++.+.++.+++|+|+|||+++.+..||++++|++|++++.|+.+++.++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999887678999999999999988999999999999999998888754
No 60
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.1e-50 Score=383.74 Aligned_cols=220 Identities=28% Similarity=0.426 Sum_probs=194.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.++++||+|.|++ +++++|+||++++||+++|+||||||||||+|+|+|+++|.+|+|.+||+++.+++.+++.+.++
T Consensus 2 ~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 4789999999974 36999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcc-CccchhhhcCCCC--------CCc---HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 322 IIPQDPTM-FEGSVHNNLDPLE--------EYA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 322 ~v~Q~~~l-f~~ti~~Ni~~~~--------~~~---~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
||||++.. |.-|++|-+.+++ ..+ .+.+.++++.+++.++.++.- ..||||||||+.
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----------~~LSGGerQrv~ 148 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----------DELSGGERQRVL 148 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----------cccChhHHHHHH
Confidence 99999754 5569999887652 112 335788999999999876532 357999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
|||||+++|++++||||||+||...+.++++.++++. +++|+|+|.|+++.+.+ ||++++|++|+|+.+|+++|++.
T Consensus 149 iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 149 IARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999865 47999999999987765 99999999999999999999987
Q ss_pred cCCChHHHHH
Q 011281 467 NKSSSFAQLV 476 (489)
Q Consensus 467 ~~~~~~~~l~ 476 (489)
. ...++.|
T Consensus 229 ~--e~l~~Vy 236 (258)
T COG1120 229 E--ENLREVY 236 (258)
T ss_pred H--HHHHHHh
Confidence 5 2344443
No 61
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.3e-49 Score=368.34 Aligned_cols=225 Identities=25% Similarity=0.418 Sum_probs=197.2
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH---Hhh
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLR 317 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r 317 (489)
..|++++|+++|++. .+++|+||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|.++..++.+ .+|
T Consensus 7 ~~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 459999999999653 699999999999999999999999999999999999999999999999999998865 468
Q ss_pred ccceEEcCCCccCcc-chhhhcCCC----CCCcHHHH----HHHHHHcCCcHH-HHhccccccchhhcCCCCCCchHHHH
Q 011281 318 SRLSIIPQDPTMFEG-SVHNNLDPL----EEYADEEI----WEALDKCQLGNE-VRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~~-ti~~Ni~~~----~~~~~~~~----~~~~~~~~l~~~-i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
+++|+++|..-||+. ||+||+.+. ...+++.+ ..-++.+||... .+..| +.||||++.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 999999999999986 999999873 23444444 345778888877 45555 4579999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
++||||++-||+|+++|||||+|||.+...+-+.|+++.+ +.|+|+|||+++++.. ||||+++.+|+|+..|+++|+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999888887653 7899999999999987 899999999999999999999
Q ss_pred hhcCCChHHHHHHH
Q 011281 465 LENKSSSFAQLVAE 478 (489)
Q Consensus 465 ~~~~~~~~~~l~~~ 478 (489)
.+.++...++++..
T Consensus 234 ~~sd~P~v~qf~~G 247 (263)
T COG1127 234 LASDDPWVRQFFNG 247 (263)
T ss_pred HhCCCHHHHHHhcC
Confidence 99866656665543
No 62
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.2e-49 Score=400.43 Aligned_cols=223 Identities=25% Similarity=0.385 Sum_probs=193.7
Q ss_pred EEEEEEEEEECCC--CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---hh
Q 011281 243 VDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LR 317 (489)
Q Consensus 243 i~~~~v~~~y~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 317 (489)
|+++||+++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 235999999999999999999999999999999999999999999999999998887554 57
Q ss_pred ccceEEcCCCccCc-cchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 318 SRLSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~-~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
+.|+|+||++.+|+ .|++||+.+.. ..+ ++++.++++.+++.++.++.| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999996 69999997631 122 345778899999988766554 457999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
|||||+.+|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|++.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999988643 7899999999999976 99999999999999999999987
Q ss_pred cCCChH-HHHH
Q 011281 467 NKSSSF-AQLV 476 (489)
Q Consensus 467 ~~~~~~-~~l~ 476 (489)
.+...+ ++++
T Consensus 231 ~p~~~~~~~~~ 241 (343)
T TIGR02314 231 HPKTPLAQKFI 241 (343)
T ss_pred CCCcHHHHHHH
Confidence 654333 4443
No 63
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=5.5e-49 Score=380.88 Aligned_cols=232 Identities=32% Similarity=0.572 Sum_probs=208.9
Q ss_pred EEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 243 VDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 243 i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
++++|+++.|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999753 235899999999999999999999999999999999999999999999999998777777788899
Q ss_pred EEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCE
Q 011281 322 IIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 400 (489)
Q Consensus 322 ~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~i 400 (489)
|++|++.+|+.|++||+.++. ....+++.+.++..++.+++..+|.|+++.+.....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999899999998753 3345667788888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 011281 401 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475 (489)
Q Consensus 401 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l 475 (489)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+++... ...++.+
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 234 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKL 234 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHH
Confidence 9999999999999999999999877677899999999999988999999999999999999998865 3334433
No 64
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-49 Score=397.02 Aligned_cols=217 Identities=23% Similarity=0.371 Sum_probs=195.9
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..++++||+.+|++ ..+++|+||+|++||++++.|||||||||++++|+||..|++|+|.+||+++.+++++ ++.|
T Consensus 4 ~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 35899999999973 4699999999999999999999999999999999999999999999999999998775 7889
Q ss_pred eEEcCCCccCc-cchhhhcCCCCC----Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 321 SIIPQDPTMFE-GSVHNNLDPLEE----YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 321 ~~v~Q~~~lf~-~ti~~Ni~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
++|+|+.-||+ .||+||+.|+=. .. ++++.++++.+++.++..+.|.. |||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~q-----------LSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQ-----------LSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhh-----------hChHHHHHHHHH
Confidence 99999999996 599999988621 22 34789999999999998888765 599999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 468 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~ 468 (489)
|||..+|++|+||||.|+||...+.+++..+++.. .|.|.|+|||+-+.... +|||.||++|+|.+.|+++|++..|
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999999887643 48899999999887766 9999999999999999999999887
Q ss_pred CChH
Q 011281 469 SSSF 472 (489)
Q Consensus 469 ~~~~ 472 (489)
...|
T Consensus 229 ~~~f 232 (352)
T COG3842 229 ATRF 232 (352)
T ss_pred chHH
Confidence 5555
No 65
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=5.4e-49 Score=376.37 Aligned_cols=218 Identities=32% Similarity=0.488 Sum_probs=199.8
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.++++|++++|++....+++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 48899999999753345899999999999999999999999999999999999999999999999988777777788999
Q ss_pred EEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCE
Q 011281 322 IIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 400 (489)
Q Consensus 322 ~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~i 400 (489)
|++|++.+|..|++||+.+.. ....+++.++++.+++.+.++..|.|++|.+.+...+||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999889999998753 3345678889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 011281 401 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 459 (489)
Q Consensus 401 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 459 (489)
+||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999876568999999999988779999999999998754
No 66
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-49 Score=365.88 Aligned_cols=225 Identities=27% Similarity=0.379 Sum_probs=191.6
Q ss_pred cEEEEEEEEEECCCC--CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC-hHHhhc
Q 011281 242 EVDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDLRS 318 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~r~ 318 (489)
.++++|+++.|+... .++++||||++.+||.++||||||||||||.++|+|+.+|++|+|.++|.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999997653 13899999999999999999999999999999999999999999999998776543 335678
Q ss_pred cceEEcCCCcc-Cc--cchhhhcC----CC-CCCcHHHHHHHHHHcCCcH-HHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 319 RLSIIPQDPTM-FE--GSVHNNLD----PL-EEYADEEIWEALDKCQLGN-EVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 319 ~i~~v~Q~~~l-f~--~ti~~Ni~----~~-~~~~~~~~~~~~~~~~l~~-~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
.|-+|+|||+- ++ .||++-|. .. -+-..+++.++++.+|+.+ |..+.|+. |||||+||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~e-----------LSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHE-----------LSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchh-----------cChhHHHHHH
Confidence 89999999973 32 37776663 21 1223456999999999986 45566654 5999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
|||||.-+|++||+|||||+||+..+..|.+.+.+..+ +-|.|+|||++..+.+ ||||+||++|+|+|.++.+++.+
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999999999999999988765 4599999999999998 99999999999999999999998
Q ss_pred cCCChHHHHHH
Q 011281 467 NKSSSFAQLVA 477 (489)
Q Consensus 467 ~~~~~~~~l~~ 477 (489)
.+...|.+.+-
T Consensus 232 ~~~h~ytr~Ll 242 (252)
T COG1124 232 HPSHPYTRELL 242 (252)
T ss_pred CCccHHHHHHH
Confidence 75566765443
No 67
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-49 Score=370.76 Aligned_cols=196 Identities=28% Similarity=0.380 Sum_probs=175.8
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.+++++|++.|+. ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4789999999976 3599999999999999999999999999999999999999999999999988554 34799
Q ss_pred EEcCCCccCc-cchhhhcCCCCCC-------cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFE-GSVHNNLDPLEEY-------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~-~ti~~Ni~~~~~~-------~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
||+|++.||+ -|+++|+.++-+. ..+++.+.++.+||.++-++.|.. ||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~q-----------LSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQ-----------LSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccc-----------cChHHHHHHHHHHH
Confidence 9999999998 6999999875221 245689999999999999988865 59999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeC--CEE
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLI 455 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i 455 (489)
|+.+|++|+||||++|||+.|+..+++.+.+.. .++|+++|||+.+++-. +|||++|.+ |+|
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 999999999999999999999999999998753 46899999999998877 999999999 445
No 68
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.7e-49 Score=349.58 Aligned_cols=210 Identities=27% Similarity=0.385 Sum_probs=188.2
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
+.+++|.|+|... + -.++++|++||++||+||||||||||+++|+||..|.+|+|.+||+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~~-~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL-P---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCcc-e---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 4678999999643 1 357899999999999999999999999999999999999999999999877653 567999
Q ss_pred EcCCCccCc-cchhhhcCCCC-------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFE-GSVHNNLDPLE-------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~~-------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++||..||. -||++|+.++- ....+++..++.++|+..+.+++|..+ |||||||+||||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~L-----------SGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL-----------SGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcccc-----------CchHHHHHHHHHHH
Confidence 999999996 49999998762 123578999999999999999999755 99999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 469 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~ 469 (489)
+|+.|||+||||+|+|||.-+..+...+.+.. ++.|+++|||.++.+.. +||++++++|+|..+|+.+++.+.+.
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999999999887754 46899999999999987 99999999999999999999998643
No 69
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.4e-48 Score=366.17 Aligned_cols=204 Identities=26% Similarity=0.370 Sum_probs=177.8
Q ss_pred EEEEEEEEEECCCC--CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---h-
Q 011281 243 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---L- 316 (489)
Q Consensus 243 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~- 316 (489)
++++||+..|.... ..+|+++||+|++||+++|+||||||||||+++|.|+..|++|.|.++|.++..++.++ +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56899999996442 25899999999999999999999999999999999999999999999999999988543 4
Q ss_pred hccceEEcCCCccCcc-chhhhcCC----CCC---CcHHHHHHHHHHcCCcHHHH-hccccccchhhcCCCCCCchHHHH
Q 011281 317 RSRLSIIPQDPTMFEG-SVHNNLDP----LEE---YADEEIWEALDKCQLGNEVR-KNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 317 r~~i~~v~Q~~~lf~~-ti~~Ni~~----~~~---~~~~~~~~~~~~~~l~~~i~-~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
|++||||+|+..|.+. |++||+.+ ... ...++..+.++.+|+.+... +.| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 4569999999999876 99999974 211 22456788888889887665 445 4579999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCEEEE
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEE 457 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 457 (489)
+||||||+.+|++++.||||++||+++.+.+++.+.+.. .++|+|+|||+...+..|||++.|++|++..
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999998863 3789999999999999999999999999543
No 70
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.7e-49 Score=353.10 Aligned_cols=207 Identities=25% Similarity=0.319 Sum_probs=187.4
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH---Hhhcc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLRSR 319 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~~ 319 (489)
|+|+||+.+|++. +++|+||||+|++||++.++||||||||||+|+|++...|+.|+|.++|.|+..+..+ .+|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7899999999987 6799999999999999999999999999999999999999999999999999887644 58999
Q ss_pred ceEEcCCCccCcc-chhhhcCCC-----C--CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 320 LSIIPQDPTMFEG-SVHNNLDPL-----E--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 320 i~~v~Q~~~lf~~-ti~~Ni~~~-----~--~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
||+|+||..|... |+.||+.+. . ..-.+++.++++.+||.+-...+|.. |||||+||++||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~-----------LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQ-----------LSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccc-----------cCchHHHHHHHH
Confidence 9999999998765 999999863 1 22356889999999999999999865 599999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecCh
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 461 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 461 (489)
||+..+|++||-||||.+|||++...|++.+.+. ..|.||++.||+.+.+.. --|++.+++|+++....+
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 9999999999999999999999999999999875 358999999999999998 589999999999875543
No 71
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-48 Score=377.20 Aligned_cols=212 Identities=27% Similarity=0.413 Sum_probs=185.8
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh---HHhhcc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HDLRSR 319 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~~ 319 (489)
|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 468999999964 359999999999999999999999999999999999999999999999999877654 567889
Q ss_pred ceEEcCCCccCcc-chhhhcCCCC----CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 320 LSIIPQDPTMFEG-SVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 320 i~~v~Q~~~lf~~-ti~~Ni~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
++|++|++.+|+. |++||+.++. ..+ .+++.++++.+++.++.++.| ..||||||||++|
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~i 147 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-----------AELSGGMKKRVAL 147 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHH
Confidence 9999999999986 9999997631 122 245677888888876654433 4589999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
||||+.+|+++||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 999999999999999999999999999999998764 37899999999998876 999999999999999999998764
No 72
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-48 Score=373.34 Aligned_cols=214 Identities=28% Similarity=0.438 Sum_probs=195.5
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC-CCChHHhhccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS-SIGLHDLRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~-~~~~~~~r~~i 320 (489)
.++++|++|+|++. .++++++||+|++||.++|+||||||||||+++++|+++|++|.|.++|.++. ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 47899999999876 57999999999999999999999999999999999999999999999999988 47788999999
Q ss_pred eEEcCCC--ccCccchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 321 SIIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 321 ~~v~Q~~--~lf~~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
|||+|+| ++|..||.+.+.|+. ..+ ++++.++++.+++.++.++.|. +||||||||+|||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~-----------~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPF-----------NLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc-----------ccCCcceeeHHhh
Confidence 9999999 689999999998863 223 3568889999999998766664 5699999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
.+|+.+|++||||||||+||+...+.+++.++++.+ ++|+|++||+++.+.. |||+++|++|+++.+|+++++.++
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999998764 4799999999999988 999999999999999999999875
No 73
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.6e-48 Score=374.86 Aligned_cols=211 Identities=30% Similarity=0.487 Sum_probs=184.9
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCCceEEECCEeCCCCC--hHH
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV-----EPTAGLIAIDGIDISSIG--LHD 315 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~-----~~~~G~i~~~g~~~~~~~--~~~ 315 (489)
|+++||+++|++. ++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 4789999999653 5999999999999999999999999999999999999 999999999999987766 556
Q ss_pred hhccceEEcCCCccCccchhhhcCCCC---C-C----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 316 LRSRLSIIPQDPTMFEGSVHNNLDPLE---E-Y----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 316 ~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~-~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
+++.++|++|++.+|..|++||+.+.. . . .++++.++++.+++.+...+.++ +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHH
Confidence 788999999999999779999997631 1 1 13467788899888776554321 45789999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
++|||||+++|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999987555899999999998875 999999999999999987763
No 74
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-48 Score=393.01 Aligned_cols=217 Identities=21% Similarity=0.352 Sum_probs=191.7
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++|++++|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 38999999999433 3599999999999999999999999999999999999999999999999999877654 47899
Q ss_pred EEcCCCccCc-cchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~-~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
||+|++.+|+ .|++||+.++. ..+ .+++.++++.+++.++.++.|. +||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----------~LSgGq~QRvalARA 148 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR-----------ELSGGQRQRVAMGRA 148 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh-----------hCCHHHHHHHHHHHH
Confidence 9999999996 59999998742 122 3467889999999888777664 579999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 470 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~ 470 (489)
|+++|++||||||||+||+.+++.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++|+.+++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAS 228 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCcc
Confidence 9999999999999999999999999999987643 7899999999998775 999999999999999999999987654
Q ss_pred hH
Q 011281 471 SF 472 (489)
Q Consensus 471 ~~ 472 (489)
.|
T Consensus 229 ~~ 230 (356)
T PRK11650 229 TF 230 (356)
T ss_pred HH
Confidence 44
No 75
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.5e-48 Score=364.72 Aligned_cols=205 Identities=58% Similarity=0.951 Sum_probs=182.9
Q ss_pred CCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 239 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 239 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
..+.++++|++++|++...++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++|+
T Consensus 3 ~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 3 EHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 34569999999999754345999999999999999999999999999999999999999999999999998888778889
Q ss_pred cceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
.|+|++|++.+|++|+++|+.+....+.+++.++++ +......|||||+||++||||++.+|
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999998754444555544443 23456789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecCh
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSP 461 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 461 (489)
+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999987678999999999999988999999999999988763
No 76
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-48 Score=368.81 Aligned_cols=209 Identities=27% Similarity=0.385 Sum_probs=184.2
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++|++|+|++. ++|+||||++++|++++|+||||||||||+|+|+|+.+|.+|+|.++|.+.+.... +..||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 58999999999865 49999999999999999999999999999999999999999999999988765432 46899
Q ss_pred EEcCCC---ccCccchhhhcCCCCC-----------CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 322 IIPQDP---TMFEGSVHNNLDPLEE-----------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 322 ~v~Q~~---~lf~~ti~~Ni~~~~~-----------~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
||||.. +-|+-||+|=+.++.- .+.+++.+|++++|+.++.++ +|| .|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~----~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIG----ELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------ccc----ccCcHHHHH
Confidence 999965 4588899998876421 234789999999999988654 344 389999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
+.|||||+.+|++|+|||||+|+|+.++..+.+.|+++. +|+||++|||+++.+.. +|+|+.| ++++...|++++..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhcc
Confidence 999999999999999999999999999999999999876 48999999999999886 9999999 66788999999998
Q ss_pred hc
Q 011281 466 EN 467 (489)
Q Consensus 466 ~~ 467 (489)
+.
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 64
No 77
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-48 Score=359.66 Aligned_cols=221 Identities=24% Similarity=0.374 Sum_probs=193.2
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC---hHHhhc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---LHDLRS 318 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~r~ 318 (489)
.|+++||+..||++ ..+|+||||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.++..++ ..++|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 48999999999855 46999999999999999999999999999999999999999999999999998887 556788
Q ss_pred cceEEcCCCccCcc-chhhhcCCCC---------------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCc
Q 011281 319 RLSIIPQDPTMFEG-SVHNNLDPLE---------------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 382 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~-ti~~Ni~~~~---------------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSg 382 (489)
+|||++|.+.|-+. |+.+|+..++ ..++.+..++++++|+.+..-. +..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCCc
Confidence 99999999999875 9999985321 1223457788999998887543 4567899
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 383 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 383 Gq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
||+||++|||||.++|++++-|||+|+|||.+.+++++.|++.. .|.|+|+.-|.++.++. ||||+-|++|+|+.+|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999998753 57999999999999987 9999999999999999
Q ss_pred ChhHHhhcCCChHHHHHH
Q 011281 460 SPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 460 ~~~el~~~~~~~~~~l~~ 477 (489)
+.+|+-+. .+.+.|.
T Consensus 231 ~~~el~~~---~~~~iYg 245 (258)
T COG3638 231 PASELTDE---ALDEIYG 245 (258)
T ss_pred ChhhhhHH---HHHHHhc
Confidence 99996542 3445544
No 78
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-47 Score=373.85 Aligned_cols=221 Identities=25% Similarity=0.410 Sum_probs=193.4
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCceEEECCEeCCCCChHHhhcc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE---PTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+...+|+.
T Consensus 3 ~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 3 AKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred eeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 789999999974 359999999999999999999999999999999999984 699999999999988777778889
Q ss_pred ceEEcCCCccCccchhhhcCCCC---C------CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE---E------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~---~------~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
++|+||++.+|+.|++||+.++. . ..++++.++++.+++.+++..+ ....+.+||||||||++|
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRLCI 153 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHHHH
Confidence 99999999999999999997641 1 1234567888999887665432 344567899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 469 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~ 469 (489)
|||++++|+++||||||++||+.+...+.+.|.+..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 233 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPK 233 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCCC
Confidence 99999999999999999999999999999999887678999999999998875 99999999999999999999986543
Q ss_pred ChH
Q 011281 470 SSF 472 (489)
Q Consensus 470 ~~~ 472 (489)
..+
T Consensus 234 ~~~ 236 (246)
T PRK14269 234 QEK 236 (246)
T ss_pred cHH
Confidence 333
No 79
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-47 Score=385.33 Aligned_cols=218 Identities=23% Similarity=0.335 Sum_probs=185.6
Q ss_pred CccEEEEEEEEEECCCC---CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC-----
Q 011281 240 QGEVDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----- 311 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----- 311 (489)
...|+++|++|+|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 34699999999997532 3599999999999999999999999999999999999999999999999998653
Q ss_pred -----------ChHHhhccceEEcCCC--ccCccchhhhcCCCC---CCcHH----HHHHHHHHcCCcHHHHhccccccc
Q 011281 312 -----------GLHDLRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYADE----EIWEALDKCQLGNEVRKNEGKLES 371 (489)
Q Consensus 312 -----------~~~~~r~~i~~v~Q~~--~lf~~ti~~Ni~~~~---~~~~~----~~~~~~~~~~l~~~i~~l~~gldt 371 (489)
....+|+.|+||+|+| ++|+.|++||+.++. ..+.+ ++.++++.+++.+ .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~ 168 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------S 168 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------h
Confidence 3456889999999998 689999999997752 22322 3445556655531 2
Q ss_pred hhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-hcCEEEE
Q 011281 372 RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVI-DSDMVLL 449 (489)
Q Consensus 372 ~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~ 449 (489)
.....+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|.+.. +++|+|+|||+++.+. .||||++
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 3455677899999999999999999999999999999999999999999998753 5789999999999875 5999999
Q ss_pred EeCCEEEEecChhHHhhc
Q 011281 450 LSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 450 l~~G~i~~~g~~~el~~~ 467 (489)
|++|+|++.|+++++.+.
T Consensus 249 l~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 249 MDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EECCEEEEeCCHHHHhcC
Confidence 999999999999988654
No 80
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-47 Score=390.09 Aligned_cols=216 Identities=25% Similarity=0.389 Sum_probs=191.6
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++ .++.|+
T Consensus 6 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDIC 81 (351)
T ss_pred EEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 5899999999964 358999999999999999999999999999999999999999999999999987654 357899
Q ss_pred EEcCCCccCcc-chhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
||+|++.+|+. |++||+.++- ..+ ++++.++++.+++.++.++.| ..||||||||++||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 9999998741 122 457788999999987766555 4579999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 470 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~ 470 (489)
|+++|++||||||||+||+.+.+.+++.|+++.+ +.|+|+|||+.+.+.. ||||++|++|+|++.|+++++..++..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~ 230 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPAS 230 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999999999999999999999987643 7899999999999865 999999999999999999999987654
Q ss_pred hH
Q 011281 471 SF 472 (489)
Q Consensus 471 ~~ 472 (489)
.|
T Consensus 231 ~~ 232 (351)
T PRK11432 231 RF 232 (351)
T ss_pred hH
Confidence 44
No 81
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-47 Score=369.64 Aligned_cols=222 Identities=29% Similarity=0.482 Sum_probs=193.0
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.++++|++++|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGK--EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 48899999999643 5899999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEcCCCccCccchhhhcCCCC---CCcHHHHHHHHHHcCCc-HHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 322 IIPQDPTMFEGSVHNNLDPLE---EYADEEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 322 ~v~Q~~~lf~~ti~~Ni~~~~---~~~~~~~~~~~~~~~l~-~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
|++|++.+|+.|++||+.+.. ....+++.+.++.+++. +... .....||||||||++||||++++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999998642 22245677788888875 2322 34567999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 474 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~ 474 (489)
|+++||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|..
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 99999999999999999999999998764 37899999999999876 9999999999999999999998754444554
Q ss_pred HH
Q 011281 475 LV 476 (489)
Q Consensus 475 l~ 476 (489)
.+
T Consensus 230 ~~ 231 (241)
T PRK14250 230 LF 231 (241)
T ss_pred HH
Confidence 43
No 82
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-47 Score=389.28 Aligned_cols=219 Identities=24% Similarity=0.376 Sum_probs=189.5
Q ss_pred EEEEEEEEEECC--CCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---hh
Q 011281 243 VDIHGLQVRYAP--HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LR 317 (489)
Q Consensus 243 i~~~~v~~~y~~--~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 317 (489)
|+++||+++|++ ....+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 689999999972 1245999999999999999999999999999999999999999999999999998876544 47
Q ss_pred ccceEEcCCCccCc-cchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 318 SRLSIIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~-~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
+.|+||+|++.+|. .|++||+.+.. ..+ ++++.++++.+++.++.++.| .+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP-----------AQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 88999999999987 59999997531 122 245677888888876655433 468999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
|||||+++|+++||||||++||+.+.+.+++.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999998764 37899999999999886 99999999999999999999987
Q ss_pred cCCChH
Q 011281 467 NKSSSF 472 (489)
Q Consensus 467 ~~~~~~ 472 (489)
.+...+
T Consensus 231 ~~~~~~ 236 (343)
T PRK11153 231 HPKHPL 236 (343)
T ss_pred CCCcHH
Confidence 643333
No 83
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-47 Score=378.52 Aligned_cols=215 Identities=26% Similarity=0.386 Sum_probs=190.5
Q ss_pred cEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 242 EVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
.++++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743 24599999999999999999999999999999999999999999999999999887777888999
Q ss_pred eEEcCCCc--cCccchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 321 SIIPQDPT--MFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 321 ~~v~Q~~~--lf~~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
+|++|+|. ++..|++||+.++. ..+ ++++.++++.+++.++.++.| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999983 45679999998742 122 346788899999987766554 46899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+..||||++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999999998764 27899999999999978999999999999999999998764
No 84
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.3e-47 Score=388.15 Aligned_cols=216 Identities=25% Similarity=0.377 Sum_probs=191.4
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...++. ++.++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999975 3589999999999999999999999999999999999999999999999999876653 67899
Q ss_pred EEcCCCccCc-cchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~-~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
||+|++.+|+ .|++||+.++. ..+ ++++.++++.+++.++.++.| .+||||||||++||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999996 59999998741 112 456788999999888766555 4579999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 470 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~ 470 (489)
|+++|++++||||||+||+.+++.+++.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+++++++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~ 228 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPAT 228 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999987643 7899999999998865 999999999999999999999987654
Q ss_pred hH
Q 011281 471 SF 472 (489)
Q Consensus 471 ~~ 472 (489)
.|
T Consensus 229 ~~ 230 (353)
T TIGR03265 229 PF 230 (353)
T ss_pred HH
Confidence 44
No 85
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.3e-47 Score=366.61 Aligned_cols=216 Identities=32% Similarity=0.474 Sum_probs=195.0
Q ss_pred CccEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 240 QGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
.+.++++|++++|++. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4569999999999753 235999999999999999999999999999999999999999999999999987777777788
Q ss_pred cceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
.++|++|++.+|+.|++||+.++. .....++.+..+..++.+++..++.|+++.+.....+||||||||++||||++++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998743 2334455566677788899999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEE
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLI 455 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 455 (489)
|+++||||||++||+.+.+.+.+.++++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999987667899999999999988999999999975
No 86
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1e-47 Score=366.61 Aligned_cols=202 Identities=26% Similarity=0.347 Sum_probs=176.6
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH---Hhhcc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLRSR 319 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~~ 319 (489)
++++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 689999999975433599999999999999999999999999999999999999999999999998766543 46789
Q ss_pred ceEEcCCCccCc-cchhhhcCCCC---C----CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 320 LSIIPQDPTMFE-GSVHNNLDPLE---E----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 320 i~~v~Q~~~lf~-~ti~~Ni~~~~---~----~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
++|++|++.+|. .|++||+.+.. . ..++++.++++.+++.++.++.| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999887 49999997531 1 12456788999999877765554 35799999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEE
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 455 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 455 (489)
|||+.+|+++||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998764 47899999999999876 999999999975
No 87
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-47 Score=370.49 Aligned_cols=219 Identities=26% Similarity=0.430 Sum_probs=189.8
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCh
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IGL 313 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 313 (489)
+.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 5 ~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 5 PKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred cEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 35899999999964 359999999999999999999999999999999999974 689999999999864 344
Q ss_pred HHhhccceEEcCCCccCccchhhhcCCCC---C-----CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 314 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---E-----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 314 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~-----~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
..+|+.++|++|++.+|+.|++||+.++. . ...+++.++++.+++.+++.. .......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 56788999999999999889999997531 1 123567788888888665432 33455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
||++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999999865 999999999999999999999
Q ss_pred hhcC
Q 011281 465 LENK 468 (489)
Q Consensus 465 ~~~~ 468 (489)
.+.+
T Consensus 236 ~~~~ 239 (253)
T PRK14242 236 FTRP 239 (253)
T ss_pred HcCC
Confidence 8653
No 88
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-47 Score=370.41 Aligned_cols=222 Identities=28% Similarity=0.401 Sum_probs=190.5
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IGLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~~~ 314 (489)
.++++|++++|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 5899999999974 3589999999999999999999999999999999999997 48999999998853 3345
Q ss_pred HhhccceEEcCCCccCccchhhhcCCCCC----Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE----YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
.+|+.++|++|++.+|+.|++||+.++.. .. ++++.++++.+++.+.+. +.+++ ...+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~----~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---DKLNT----NALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---HHHhC----CcccCCHHHHH
Confidence 67889999999999998999999976421 11 345677888888765432 23333 46789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++|||||+++|+++||||||++||+.+.+.+++.|.++.+++|+|++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999876 9999999999999999999998
Q ss_pred hcCCChH
Q 011281 466 ENKSSSF 472 (489)
Q Consensus 466 ~~~~~~~ 472 (489)
+++...|
T Consensus 238 ~~~~~~~ 244 (254)
T PRK14273 238 FNPKNTK 244 (254)
T ss_pred hCCCChH
Confidence 7644444
No 89
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-47 Score=366.93 Aligned_cols=211 Identities=23% Similarity=0.377 Sum_probs=183.0
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999975 359999999999999999999999999999999999999999999999999876543 3568999
Q ss_pred EcCCCccCc-cchhhhcCCCCC---C----c----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 323 IPQDPTMFE-GSVHNNLDPLEE---Y----A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~~~---~----~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
++|+|.+|+ .|++||+.++.. . . .+++.++++.+++.++..+. ..+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHH
Confidence 999999986 599999976421 1 1 23466778888876654443 34689999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
||||+.+|+++||||||++||+.+.+.+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999999999987642 7899999999998765 999999999999999999999765
Q ss_pred C
Q 011281 468 K 468 (489)
Q Consensus 468 ~ 468 (489)
+
T Consensus 228 ~ 228 (239)
T cd03296 228 P 228 (239)
T ss_pred C
Confidence 3
No 90
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-45 Score=360.58 Aligned_cols=438 Identities=20% Similarity=0.276 Sum_probs=309.4
Q ss_pred hhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011281 2 HFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQY 81 (489)
Q Consensus 2 ~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~ 81 (489)
.+|++..|+..+++.+++.++.++++|+..+. +....+..+.++.+..++.++++.++|+++++++++.+.+.++....
T Consensus 88 ~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~ 166 (546)
T COG4615 88 IKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFV 166 (546)
T ss_pred HHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999998 44556677888888888899999999999987766555555555554
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHH--HHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 011281 82 YLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDT--NMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSII 159 (489)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (489)
.+.+..+..+...+..+++.+...-.++|.++++....-.++... +....+.+++ +.............+...+.
T Consensus 167 ~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~---~~~~~n~f~~la~~~~ni~l 243 (546)
T COG4615 167 LMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH---HIIRANTFHLLAVNWSNIML 243 (546)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh---hhhhhhHHHHHHHHHHHHHH
Confidence 444545555555666778888999999999999988655443322 1111111211 11100000001111111111
Q ss_pred H-HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCC
Q 011281 160 F-VFSLFFIISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWP 238 (489)
Q Consensus 160 ~-~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 238 (489)
+ .+.+.++.....+--+......++.....+-.+..+++..+-.+-.+.++.+++.++...|.... -+. ....|
T Consensus 244 ~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~----~~~-~q~~p 318 (546)
T COG4615 244 LGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKAD----FPR-PQAFP 318 (546)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcccc----CCC-CCcCC
Confidence 1 11111111111111111111222222233444555566666677788999999998765322111 111 11223
Q ss_pred CCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 239 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 239 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
.-..|+++||.|+|++.. ..+.+||++|++||.+.|+|.|||||||+++++.|+|.|++|+|.+||.+++.-+++++|+
T Consensus 319 ~~~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~ 397 (546)
T COG4615 319 DWKTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRK 397 (546)
T ss_pred cccceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHH
Confidence 345799999999998764 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEcCCCccCccch-hhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 319 RLSIIPQDPTMFEGSV-HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti-~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
.++-|+.|.|+|+.++ .|| ..+.+.+.+-+.+..+.+...-..+.+ ....||-|||.|+|+--|++.+
T Consensus 398 LfSavFsDyhLF~~ll~~e~-----~as~q~i~~~LqrLel~~ktsl~d~~f------s~~kLStGQkKRlAll~AllEe 466 (546)
T COG4615 398 LFSAVFSDYHLFDQLLGPEG-----KASPQLIEKWLQRLELAHKTSLNDGRF------SNLKLSTGQKKRLALLLALLEE 466 (546)
T ss_pred HHHHHhhhHhhhHhhhCCcc-----CCChHHHHHHHHHHHHhhhhcccCCcc------cccccccchHHHHHHHHHHHhh
Confidence 9999999999999765 122 256677776666665554432111111 1235899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~--~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 460 (489)
.||+++||=.+--||.-++.+.+.+.-. ..||||+.|||+-.+...|||++.|++|+++|.-.
T Consensus 467 R~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 467 RDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELTG 531 (546)
T ss_pred CCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeeccc
Confidence 9999999999999999999888776533 35999999999999999999999999999998543
No 91
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.7e-47 Score=364.69 Aligned_cols=210 Identities=25% Similarity=0.341 Sum_probs=182.0
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++||+++|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 478999999975324599999999999999999999999999999999999999999999999998654 3567788999
Q ss_pred EcCCCccCc-cchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++|++.+|. .|+++|+.+.. ... .+++.++++.+++.+..+.. ..+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKR-----------ARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhCh-----------hhhCCHHHHHHHHHHHHH
Confidence 999999985 69999997531 111 24567788888876554332 346899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
+.+|+++||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999987667899999999999876 999999999999999998875
No 92
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-47 Score=375.40 Aligned_cols=212 Identities=26% Similarity=0.383 Sum_probs=188.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999643 35999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEcCCC--ccCccchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 322 IIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 322 ~v~Q~~--~lf~~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
|++|+| .+|..|+++|+.++. ..+ ++++.++++.+++.++.++.|. .||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh-----------hCCHHHHHHHHHHH
Confidence 999998 577889999998642 122 3467888999999877666553 57999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
||+.+|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999998764 47899999999999865 9999999999999999987653
No 93
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3e-47 Score=368.17 Aligned_cols=212 Identities=25% Similarity=0.407 Sum_probs=182.4
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh-hccce
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRLS 321 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~ 321 (489)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999974 359999999999999999999999999999999999999999999999999988776554 56799
Q ss_pred EEcCCCccCcc-chhhhcCCCCC---C--------------cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCch
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLEE---Y--------------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 383 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~~---~--------------~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgG 383 (489)
|++|++.+|++ |++||+.+... . ..+++.++++..++.+.. ......||||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG 147 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA-----------DRPAGELSYG 147 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchh-----------hCChhhCCHH
Confidence 99999999986 99999975311 0 122455666666654433 3344578999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecCh
Q 011281 384 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 461 (489)
Q Consensus 384 q~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 461 (489)
||||++||||++.+|+++||||||++||+.+.+.+.+.|.+.. +++|+|++||+++.+.. ||+|++|++|+|++.|++
T Consensus 148 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (236)
T cd03219 148 QQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTP 227 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCH
Confidence 9999999999999999999999999999999999999998765 57899999999999876 999999999999999999
Q ss_pred hHHhhc
Q 011281 462 TRLLEN 467 (489)
Q Consensus 462 ~el~~~ 467 (489)
+++...
T Consensus 228 ~~~~~~ 233 (236)
T cd03219 228 DEVRNN 233 (236)
T ss_pred HHhccC
Confidence 998754
No 94
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=7e-47 Score=368.18 Aligned_cols=219 Identities=27% Similarity=0.437 Sum_probs=188.7
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCEeCCCC--ChHH
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGLIAIDGIDISSI--GLHD 315 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~~--~~~~ 315 (489)
++++||+++|++. .+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 6899999999753 4899999999999999999999999999999999999998 99999999998753 3456
Q ss_pred hhccceEEcCCCccCccchhhhcCCCC---C-Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 316 LRSRLSIIPQDPTMFEGSVHNNLDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 316 ~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~-~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
+++.++|+||++.+|+.|++||+.+.. . .+ ++++.++++.+++.+++.. ........||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD-------RLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-------HhhCCcccCCHHHHHH
Confidence 788999999999999899999997531 1 11 3457788888888744321 2234456799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
++|||||+.+|+++||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999887666899999999998876 99999999999999999999986
Q ss_pred cCCC
Q 011281 467 NKSS 470 (489)
Q Consensus 467 ~~~~ 470 (489)
.+..
T Consensus 233 ~~~~ 236 (247)
T TIGR00972 233 NPKE 236 (247)
T ss_pred CCCC
Confidence 5433
No 95
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.7e-47 Score=387.27 Aligned_cols=217 Identities=25% Similarity=0.375 Sum_probs=192.4
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..|+++|++++|++ ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++. ++.+
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 45999999999974 3589999999999999999999999999999999999999999999999999876653 5789
Q ss_pred eEEcCCCccCcc-chhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
+||+|++.+|+. |++||+.++. ..+ ++++.++++.+++.++.++.|. +||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~-----------~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh-----------hCCHHHHHHHHHHH
Confidence 999999999965 9999998742 122 3467888999999888877764 56999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 469 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~ 469 (489)
||+++|++||||||||+||+.+++.+++.|+++.+ +.|+|+|||+.+.+.. ||||++|++|+|++.|++++++.++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999987643 7899999999998765 99999999999999999999998765
Q ss_pred ChH
Q 011281 470 SSF 472 (489)
Q Consensus 470 ~~~ 472 (489)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 444
No 96
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=7.5e-47 Score=384.38 Aligned_cols=215 Identities=23% Similarity=0.386 Sum_probs=189.6
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+. .++.++|
T Consensus 3 L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~ 78 (353)
T PRK10851 3 IEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGF 78 (353)
T ss_pred EEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEE
Confidence 789999999975 359999999999999999999999999999999999999999999999999977653 4578999
Q ss_pred EcCCCccCcc-chhhhcCCCCC-------Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 323 IPQDPTMFEG-SVHNNLDPLEE-------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~~~-------~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
|+|++.+|+. |++||+.++.. .+ ++++.++++.+++.++.++.| ..||||||||++|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999975 99999986421 12 346788899999887766555 4579999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
||||+++|+++||||||++||+.+++.+++.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++++..+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999987653 6899999999999876 999999999999999999999987
Q ss_pred CCChH
Q 011281 468 KSSSF 472 (489)
Q Consensus 468 ~~~~~ 472 (489)
+...|
T Consensus 228 p~~~~ 232 (353)
T PRK10851 228 PATRF 232 (353)
T ss_pred ccchH
Confidence 54444
No 97
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=369.06 Aligned_cols=222 Identities=27% Similarity=0.437 Sum_probs=191.4
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCh
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IGL 313 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 313 (489)
+.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 12 ~~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 12 SKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred ceEEEEEEEEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 458999999999743 59999999999999999999999999999999999986 589999999999853 345
Q ss_pred HHhhccceEEcCCCccCccchhhhcCCCC----CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 314 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 314 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
..+|+.++|++|++.+|+.|+++|+.+.. ..+ ++++.++++.+++.+.+. ..+.+...+||||||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 162 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQQ 162 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHHH
Confidence 56788999999999999999999997631 122 245778888888765432 234556778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
||++|||||+++|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999887667899999999999875 999999999999999999999
Q ss_pred hhcCCCh
Q 011281 465 LENKSSS 471 (489)
Q Consensus 465 ~~~~~~~ 471 (489)
...+...
T Consensus 243 ~~~~~~~ 249 (260)
T PRK10744 243 FTKPAKK 249 (260)
T ss_pred HhCCCcH
Confidence 8654333
No 98
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-47 Score=368.25 Aligned_cols=212 Identities=28% Similarity=0.415 Sum_probs=183.2
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC---hHHhhcc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---LHDLRSR 319 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~r~~ 319 (489)
++++||+++|++. +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999752 35999999999999999999999999999999999999999999999999998766 4567889
Q ss_pred ceEEcCCCccCc-cchhhhcCCCC---------------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCch
Q 011281 320 LSIIPQDPTMFE-GSVHNNLDPLE---------------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 383 (489)
Q Consensus 320 i~~v~Q~~~lf~-~ti~~Ni~~~~---------------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgG 383 (489)
++|++|++.+|. .|+++|+.+.. ....+++.++++.+++.+.. ......||||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G 148 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQLSGG 148 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCcccCCHH
Confidence 999999999887 59999996531 11234566777777765543 3345678999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 011281 384 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 384 q~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 460 (489)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 149 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (241)
T cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999999999999999998764 37899999999999985 99999999999999999
Q ss_pred hhHHhh
Q 011281 461 PTRLLE 466 (489)
Q Consensus 461 ~~el~~ 466 (489)
++++.+
T Consensus 229 ~~~~~~ 234 (241)
T cd03256 229 PAELTD 234 (241)
T ss_pred HHHhhH
Confidence 998743
No 99
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.5e-47 Score=387.57 Aligned_cols=205 Identities=27% Similarity=0.384 Sum_probs=182.4
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh----hccceEEcCCCccCcc-
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL----RSRLSIIPQDPTMFEG- 332 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~- 332 (489)
.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++..++...+ |+.++||+|++.+|+.
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 58999999999999999999999999999999999999999999999999999888777 7899999999999975
Q ss_pred chhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeC
Q 011281 333 SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE 405 (489)
Q Consensus 333 ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDE 405 (489)
|++||+.++. ..+ .+++.++++.++|.+++.+.|. +||||||||++|||||+.+|+++||||
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----------~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD-----------ELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh-----------hCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999997642 122 3567888999998877665554 679999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHH
Q 011281 406 ATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFA 473 (489)
Q Consensus 406 pts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~~~~ 473 (489)
|||+||+.+.+.+++.+.++. .++|+|+|||+++.+.. ||||++|++|++++.|++++++.++...|.
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 999999999999999998763 37999999999998765 999999999999999999999876544443
No 100
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-47 Score=376.45 Aligned_cols=213 Identities=28% Similarity=0.453 Sum_probs=184.9
Q ss_pred EEEEEEEEEECCCC---CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC--hHHhh
Q 011281 243 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG--LHDLR 317 (489)
Q Consensus 243 i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~r 317 (489)
|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997532 35999999999999999999999999999999999999999999999999997654 34678
Q ss_pred ccceEEcCCC--ccCccchhhhcCCCC---CCcH----HHHHHHHHHcCCc--HHHHhccccccchhhcCCCCCCchHHH
Q 011281 318 SRLSIIPQDP--TMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLG--NEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 318 ~~i~~v~Q~~--~lf~~ti~~Ni~~~~---~~~~----~~~~~~~~~~~l~--~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
+.|+||||+| .+|+.|++||+.++. ..++ +++.++++.+++. ++. ......|||||||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~~~LSgGq~q 151 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK-----------DKSPFELSGGQKR 151 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhc-----------cCCcccCCHHHHH
Confidence 8999999998 577889999998642 2232 3567788888885 322 2334678999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~e 463 (489)
|++|||||+.+|++|||||||++||+.+...+.+.|.++. .+.|+|+|||+++.+.. ||||++|++|++++.|+.++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998764 37899999999999865 99999999999999999999
Q ss_pred Hhh
Q 011281 464 LLE 466 (489)
Q Consensus 464 l~~ 466 (489)
+.+
T Consensus 232 ~~~ 234 (287)
T PRK13637 232 VFK 234 (287)
T ss_pred HHh
Confidence 865
No 101
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=6.6e-47 Score=385.41 Aligned_cols=218 Identities=22% Similarity=0.382 Sum_probs=192.3
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC--ceEEECCEeCCCCChHHhh
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA--GLIAIDGIDISSIGLHDLR 317 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~--G~i~~~g~~~~~~~~~~~r 317 (489)
+++|+++||+++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+. .+
T Consensus 3 ~~~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECCe--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 3569999999999753 59999999999999999999999999999999999999999 999999999977654 35
Q ss_pred ccceEEcCCCccCcc-chhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 318 SRLSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
+.|+||+|++.+|+. |++||+.++- ..+ ++++.++++.+++.++.++.|. +||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----------~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA-----------QLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh-----------hCCHHHHHHHH
Confidence 789999999999975 9999998631 122 3467888999999888777664 57999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS---DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~---~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|||||+++|++||||||||+||+.+.+.+++.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+++|+.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987543 6899999999999876 9999999999999999999999
Q ss_pred hcCCChH
Q 011281 466 ENKSSSF 472 (489)
Q Consensus 466 ~~~~~~~ 472 (489)
+.+...|
T Consensus 228 ~~p~~~~ 234 (362)
T TIGR03258 228 DAPADGF 234 (362)
T ss_pred hCcCcHH
Confidence 8764444
No 102
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-47 Score=366.87 Aligned_cols=214 Identities=25% Similarity=0.379 Sum_probs=186.2
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++||+++|++. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999753 358999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCCccCc-cchhhhcCCCC---CCc----HHHHHHHHHHcCCcH--HHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 323 IPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGN--EVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~--~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
++|++.+|+ .|++||+.+.. ..+ .+++.++++..++.+ +. .....+||||||||++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----------~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFA-----------DRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHH-----------hcChhhCCHHHHHHHHHHH
Confidence 999999986 59999997531 111 345677788877764 32 3345679999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 468 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~ 468 (489)
|++++|+++||||||++||+.+.+.+.+.|.+.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 227 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCC
Confidence 9999999999999999999999999999998764 37899999999998765 9999999999999999999987653
No 103
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-47 Score=373.62 Aligned_cols=215 Identities=26% Similarity=0.400 Sum_probs=191.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.++++||+++|++..+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999754446999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEcCCC--ccCccchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 322 IIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 322 ~v~Q~~--~lf~~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
|++|++ .++..|++||+.++. ..+ .+++.++++.+++.+++...|. .||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----------~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc-----------cCCHHHHHHHHHHH
Confidence 999998 355679999998641 122 3457888999999888776654 57999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
||+.+|+++||||||++||+.+.+.+.+.|.++.+ +.|+|++||+++.+..||||++|++|++++.|+.+++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999987653 7899999999999988999999999999999999888753
No 104
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-46 Score=368.97 Aligned_cols=225 Identities=23% Similarity=0.457 Sum_probs=191.2
Q ss_pred CCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--C
Q 011281 239 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--I 311 (489)
Q Consensus 239 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~ 311 (489)
....|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 10 ~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 10 KNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 3456999999999975 358999999999999999999999999999999999987 689999999999853 4
Q ss_pred ChHHhhccceEEcCCCccCccchhhhcCCCCC---C---cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 312 GLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE---Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 312 ~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~---~---~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
+...+|+.++|++|++.+|+.|++||+.+... . .++++.++++.+++...+. .........||||||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHH
Confidence 56677889999999999998899999986421 1 1345667788877754332 233445678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeC-----------C
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSY-----------G 453 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-----------G 453 (489)
||++|||||+++|+++||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+.. ||++++|++ |
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 9999999999999999999999999999999999999887667899999999998876 999999996 6
Q ss_pred EEEEecChhHHhhcCCChH
Q 011281 454 LIEEFDSPTRLLENKSSSF 472 (489)
Q Consensus 454 ~i~~~g~~~el~~~~~~~~ 472 (489)
++++.|+.+++.+.+...|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~ 259 (269)
T PRK14259 241 YLVEFNETKKIFNSPKQKA 259 (269)
T ss_pred eEEEeCCHHHHHhCcCChH
Confidence 7999999999987544344
No 105
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=6.6e-47 Score=367.43 Aligned_cols=211 Identities=27% Similarity=0.384 Sum_probs=182.0
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh---HHhhcc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HDLRSR 319 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~~ 319 (489)
++++||+++|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 6799999999622 359999999999999999999999999999999999999999999999999876653 346788
Q ss_pred ceEEcCCCccCc-cchhhhcCCCCC---------------CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCch
Q 011281 320 LSIIPQDPTMFE-GSVHNNLDPLEE---------------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 383 (489)
Q Consensus 320 i~~v~Q~~~lf~-~ti~~Ni~~~~~---------------~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgG 383 (489)
++|++|++.+|+ .|+++|+.+... ..++++.++++.+++.++.+ .....||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 149 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSGG 149 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHH
Confidence 999999999887 599999975311 11345667777777765443 334578999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 011281 384 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 384 q~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 460 (489)
||||++|||||+.+|+++||||||++||+.+.+.+.+.|.+.. .++|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 150 QQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCC
Confidence 9999999999999999999999999999999999999998764 37899999999999865 99999999999999999
Q ss_pred hhHHh
Q 011281 461 PTRLL 465 (489)
Q Consensus 461 ~~el~ 465 (489)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 99874
No 106
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=368.22 Aligned_cols=224 Identities=27% Similarity=0.403 Sum_probs=189.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCC--CCChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDIS--SIGLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~--~~~~~ 314 (489)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. ..+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999965 3599999999999999999999999999999999999987 4999999999986 34555
Q ss_pred HhhccceEEcCCCccCcc-chhhhcCCCC---CC--c----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchH
Q 011281 315 DLRSRLSIIPQDPTMFEG-SVHNNLDPLE---EY--A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 384 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~---~~--~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq 384 (489)
.+|+.++|++|++.+|+. |++||+.++. .. . ++++.++++..++.+++.. .......+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHHH
Confidence 678899999999999976 9999997531 11 1 2356777888877654321 2344567799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 011281 385 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 385 ~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~e 463 (489)
|||++||||++++|+++||||||++||+.+.+.+.+.|.+..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999876 99999999999999999999
Q ss_pred HhhcCCChHHH
Q 011281 464 LLENKSSSFAQ 474 (489)
Q Consensus 464 l~~~~~~~~~~ 474 (489)
+...+...+.+
T Consensus 235 ~~~~~~~~~~~ 245 (253)
T PRK14267 235 VFENPEHELTE 245 (253)
T ss_pred HHhCCCcHHHH
Confidence 98654333433
No 107
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=367.08 Aligned_cols=222 Identities=29% Similarity=0.428 Sum_probs=190.2
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCCChHHh
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIGLHDL 316 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~~ 316 (489)
.++++||+++|++. .+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 48999999999753 589999999999999999999999999999999999974 69999999999988777788
Q ss_pred hccceEEcCCCccC-ccchhhhcCCCC---C--Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 317 RSRLSIIPQDPTMF-EGSVHNNLDPLE---E--YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 317 r~~i~~v~Q~~~lf-~~ti~~Ni~~~~---~--~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
|+.|+|++|++.+| ..|++||+.++. . .. .+++.++++.+++.+++.. .+ .....+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~----~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RL----DAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hh----cCCcccCCHHHHH
Confidence 89999999999866 469999997531 1 11 3457788888888654321 12 3335679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++|||||+++|+++||||||++||+.+...+.+.|.+..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999887668999999999999865 9999999999999999999998
Q ss_pred hcCCChH
Q 011281 466 ENKSSSF 472 (489)
Q Consensus 466 ~~~~~~~ 472 (489)
+.+...+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14247 234 TNPRHEL 240 (250)
T ss_pred cCCccHH
Confidence 6543334
No 108
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-47 Score=375.48 Aligned_cols=213 Identities=28% Similarity=0.399 Sum_probs=184.7
Q ss_pred EEEEEEEEEECCCC---CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC----CChHH
Q 011281 243 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----IGLHD 315 (489)
Q Consensus 243 i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 315 (489)
|+++||+|+|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999863 33456
Q ss_pred hhccceEEcCCC--ccCccchhhhcCCCCC---Cc----HHHHHHHHHHcCCcH-HHHhccccccchhhcCCCCCCchHH
Q 011281 316 LRSRLSIIPQDP--TMFEGSVHNNLDPLEE---YA----DEEIWEALDKCQLGN-EVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 316 ~r~~i~~v~Q~~--~lf~~ti~~Ni~~~~~---~~----~~~~~~~~~~~~l~~-~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
+|+.++||+|+| .+|+.|+.+|+.++.. .+ ++++.++++.+++.+ +.. .....||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCcccCCHHHH
Confidence 788999999998 7888999999987521 22 235677788888853 333 23456899999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~e 463 (489)
||++|||||+.+|+++||||||++||+.+...+.+.+.++. .++|+|+|||+++.+.. ||||++|++|++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998764 47899999999998865 99999999999999999999
Q ss_pred Hhh
Q 011281 464 LLE 466 (489)
Q Consensus 464 l~~ 466 (489)
+..
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 875
No 109
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1e-46 Score=356.51 Aligned_cols=199 Identities=22% Similarity=0.382 Sum_probs=182.2
Q ss_pred EEEEEEEEEECCCC---CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 243 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 243 i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
++++||+++|++.. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997642 3599999999999999999999999999999999999999999999998 5
Q ss_pred ceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 399 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ 399 (489)
|+|++|+|++|+.|++||+.+.....+++..++++.+++.+++..+|.|+++.+.+....||||||||++||||++.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999865555667788899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHhc-CCceEEEEecCchhhhhcCEEEEEeCCE
Q 011281 400 VLVLDEATASVDTATDNLIQHT-LGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGL 454 (489)
Q Consensus 400 illlDEpts~lD~~~~~~i~~~-l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 454 (489)
++||||||++||+++.+.+.+. +.+.. +++|+|++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999998888874 55443 4689999999999998899999999985
No 110
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-47 Score=364.82 Aligned_cols=214 Identities=27% Similarity=0.391 Sum_probs=185.4
Q ss_pred EEEEEEEEEECCCC--CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH---Hhh
Q 011281 243 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLR 317 (489)
Q Consensus 243 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r 317 (489)
|+++|++++|++.. .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997531 2599999999999999999999999999999999999999999999999999776543 347
Q ss_pred ccceEEcCCCccCc-cchhhhcCCC---CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 318 SRLSIIPQDPTMFE-GSVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~-~ti~~Ni~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
+.++|++|++.+|. .|++||+.+. .... .+++.++++..++.+..++.+ .+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP-----------AQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh-----------hhCCHHHHHHHH
Confidence 88999999999997 5999999752 1111 345677888888876655433 468999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
||||++++|+++||||||++||+.+.+.+.+.|.++. + ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999998764 3 7899999999999876 99999999999999999998865
Q ss_pred c
Q 011281 467 N 467 (489)
Q Consensus 467 ~ 467 (489)
.
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
No 111
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-46 Score=368.42 Aligned_cols=220 Identities=24% Similarity=0.406 Sum_probs=190.4
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CC
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IG 312 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 312 (489)
.+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 347999999999974 3599999999999999999999999999999999999975 89999999999864 34
Q ss_pred hHHhhccceEEcCCCccCccchhhhcCCCC---CC--c----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCch
Q 011281 313 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY--A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 383 (489)
Q Consensus 313 ~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~--~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgG 383 (489)
...+|+.++|++|++.+|+.|++||+.+.. .. . .+++.++++.+++.+++. .........||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 556788999999999999889999997531 11 1 345678888888865442 2234556789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 011281 384 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 462 (489)
Q Consensus 384 q~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 462 (489)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999887667899999999999976 8999999999999999999
Q ss_pred HHhhcC
Q 011281 463 RLLENK 468 (489)
Q Consensus 463 el~~~~ 468 (489)
++...+
T Consensus 248 ~~~~~~ 253 (267)
T PRK14235 248 KMFTNP 253 (267)
T ss_pred HHHhCC
Confidence 998643
No 112
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-47 Score=360.59 Aligned_cols=202 Identities=25% Similarity=0.370 Sum_probs=175.8
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEE
Confidence 468999999965 35999999999999999999999999999999999999999999999999987654 24678999
Q ss_pred EcCCCccCc-cchhhhcCCCC---CC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFE-GSVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~~---~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++|++.+|. .|++||+.+.. .. .++++.++++.+++.++.++.| .+||||||||++|||||
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al 145 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARAL 145 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999886 59999997631 11 1345677888888877655544 46899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
+++|+++||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998764 37899999999998876 9999999999998765
No 113
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=6.5e-47 Score=361.51 Aligned_cols=202 Identities=26% Similarity=0.382 Sum_probs=174.4
Q ss_pred EEEEEEEEEECCCC--CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH----h
Q 011281 243 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD----L 316 (489)
Q Consensus 243 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~----~ 316 (489)
|+++||+++|++.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997531 35999999999999999999999999999999999999999999999999998765432 3
Q ss_pred hccceEEcCCCccCcc-chhhhcCCCC---CC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH
Q 011281 317 RSRLSIIPQDPTMFEG-SVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388 (489)
Q Consensus 317 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~---~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl 388 (489)
++.++|++|++.+|.. |++||+.+.. .. .++++.++++.+++.+..++. ..+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHY-----------PSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcC-----------hhhcCHHHHHHH
Confidence 5689999999999976 9999997631 11 134677788888876655443 346899999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEE
Q 011281 389 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYGLI 455 (489)
Q Consensus 389 ~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i 455 (489)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999988653 7899999999999888999999999974
No 114
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-46 Score=363.18 Aligned_cols=208 Identities=24% Similarity=0.312 Sum_probs=180.4
Q ss_pred cEEEEEEEEEECCCC--CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---h
Q 011281 242 EVDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---L 316 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 316 (489)
.++++||+++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997532 35999999999999999999999999999999999999999999999999998876543 3
Q ss_pred h-ccceEEcCCCccCcc-chhhhcCCC---CCC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 317 R-SRLSIIPQDPTMFEG-SVHNNLDPL---EEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 317 r-~~i~~v~Q~~~lf~~-ti~~Ni~~~---~~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
+ +.++|++|++.+|+. |++||+.+. ... .++++.++++.+++.+...+. ..+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR-----------PSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHH
Confidence 3 679999999999875 999999652 111 134577888888876654443 35689999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 460 (489)
++||||++.+|+++||||||++||+.+.+.+.+.|.+.. +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998763 4789999999999999999999999999998876
No 115
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=385.45 Aligned_cols=216 Identities=20% Similarity=0.316 Sum_probs=188.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.|+
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEE
Confidence 4899999999974 358999999999999999999999999999999999999999999999999987654 356799
Q ss_pred EEcCCCccCcc-chhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
||+|++.+|+. |++||+.++. ..+ ++++.++++.+++.++.++.| ..||||||||++||||
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 147 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 9999998642 122 346788899999877666554 3579999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 470 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~ 470 (489)
|+++|++|||||||++||+.+++.+.+.|+++. .+.|+|+|||+++.+.. ||+|++|++|+|++.|+++++...+..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 999999999999999999999999999998764 27899999999998876 999999999999999999999876543
Q ss_pred hH
Q 011281 471 SF 472 (489)
Q Consensus 471 ~~ 472 (489)
.|
T Consensus 228 ~~ 229 (369)
T PRK11000 228 RF 229 (369)
T ss_pred HH
Confidence 33
No 116
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-47 Score=371.61 Aligned_cols=218 Identities=25% Similarity=0.363 Sum_probs=187.9
Q ss_pred EEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh----hcc
Q 011281 244 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL----RSR 319 (489)
Q Consensus 244 ~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~ 319 (489)
.++|++++|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.
T Consensus 26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 567888888643 58999999999999999999999999999999999999999999999999987665443 467
Q ss_pred ceEEcCCCccCc-cchhhhcCCCC---CC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 320 LSIIPQDPTMFE-GSVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 320 i~~v~Q~~~lf~-~ti~~Ni~~~~---~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
++|++|++.+|+ .|++||+.+.. .. .++++.++++.+++.+++.+.|. +||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD-----------ELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----------cCCHHHHHHHHHH
Confidence 999999999886 59999997521 11 13457788999998877666553 5799999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 468 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~ 468 (489)
|||+++|+++||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+.+
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999998764 37899999999998865 9999999999999999999998765
Q ss_pred CChHHH
Q 011281 469 SSSFAQ 474 (489)
Q Consensus 469 ~~~~~~ 474 (489)
...|..
T Consensus 253 ~~~~~~ 258 (269)
T cd03294 253 ANDYVR 258 (269)
T ss_pred CcHHHH
Confidence 555544
No 117
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.2e-46 Score=378.00 Aligned_cols=223 Identities=23% Similarity=0.359 Sum_probs=190.0
Q ss_pred cEEEEEEEEEECCC-----------CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 011281 242 EVDIHGLQVRYAPH-----------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS 310 (489)
Q Consensus 242 ~i~~~~v~~~y~~~-----------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~ 310 (489)
-|+++||+++|+.. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 58999999999631 2358999999999999999999999999999999999999999999999999988
Q ss_pred CChHH---hhccceEEcCCC--ccCc-cchhhhcCCC-----CCCc----HHHHHHHHHHcCCcH-HHHhccccccchhh
Q 011281 311 IGLHD---LRSRLSIIPQDP--TMFE-GSVHNNLDPL-----EEYA----DEEIWEALDKCQLGN-EVRKNEGKLESRVT 374 (489)
Q Consensus 311 ~~~~~---~r~~i~~v~Q~~--~lf~-~ti~~Ni~~~-----~~~~----~~~~~~~~~~~~l~~-~i~~l~~gldt~vg 374 (489)
++.++ +|+.|+||+|+| .+++ .|+.+|+.+. ...+ ++++.++++.+++.+ ..++
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~---------- 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR---------- 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC----------
Confidence 87543 577899999998 4674 6999998531 1223 245667788888843 3333
Q ss_pred cCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEe
Q 011281 375 ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLS 451 (489)
Q Consensus 375 e~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~ 451 (489)
...+||||||||++|||||+.+|+++|+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||||++|+
T Consensus 158 -~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 -YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 3456899999999999999999999999999999999999999999987643 7899999999999986 99999999
Q ss_pred CCEEEEecChhHHhhcCCChHHHH
Q 011281 452 YGLIEEFDSPTRLLENKSSSFAQL 475 (489)
Q Consensus 452 ~G~i~~~g~~~el~~~~~~~~~~l 475 (489)
+|+|++.|+.+++.+++..+|.+.
T Consensus 237 ~G~ive~g~~~~i~~~~~~py~~~ 260 (331)
T PRK15079 237 LGHAVELGTYDEVYHNPLHPYTKA 260 (331)
T ss_pred CCEEEEEcCHHHHHcCCCCHHHHH
Confidence 999999999999998766667553
No 118
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1e-46 Score=356.86 Aligned_cols=198 Identities=25% Similarity=0.355 Sum_probs=174.0
Q ss_pred EEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEE
Q 011281 244 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 323 (489)
Q Consensus 244 ~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 323 (489)
+++|++++|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 368999999752 359999999999999999999999999999999999999999999999998854 4567789999
Q ss_pred cCCC--ccCccchhhhcCCCC---CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 324 PQDP--TMFEGSVHNNLDPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 324 ~Q~~--~lf~~ti~~Ni~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
+|++ .+|+.|++||+.++. ....+++.++++.+++.++.++.|. .||||||||++||||++.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL-----------SLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCch-----------hCCHHHHHHHHHHHHHHhCC
Confidence 9998 467789999998642 1234578899999999887665553 57999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEecCchhhhh-cCEEEEEeCCEEE
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSVID-SDMVLLLSYGLIE 456 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 456 (489)
+++||||||++||+.+.+.+.+.|++. .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999876 357899999999999876 9999999999985
No 119
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.4e-46 Score=360.14 Aligned_cols=212 Identities=23% Similarity=0.403 Sum_probs=178.8
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh-hccce
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRLS 321 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~ 321 (489)
|+++||+++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 4789999999753 58999999999999999999999999999999999999999999999999987776554 67799
Q ss_pred EEcCCCccCcc-chhhhcCCCCC-C----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLEE-Y----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 395 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~~-~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall 395 (489)
|++|++.+|+. |++||+.+... . ..+++.++++..+ +++.........||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP----------RLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH----------hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 99999999986 99999976421 1 1223333444331 1222334455679999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 396 KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 396 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
++|+++||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998765 57899999999998876 99999999999999999888753
No 120
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=9.5e-46 Score=365.36 Aligned_cols=219 Identities=23% Similarity=0.324 Sum_probs=194.8
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.|+++|+++.. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 37 ~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 3569999999852 3599999999999999999999999999999999999999999999988 3
Q ss_pred ceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 399 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ 399 (489)
|+|++|++++|+.|++||+.++......++.++++.+++.+++..+|.++++.+++.+..||||||||++|||||+++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998754444456677888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-HHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHH
Q 011281 400 VLVLDEATASVDTATDNLIQHTL-GQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 476 (489)
Q Consensus 400 illlDEpts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~ 476 (489)
+|||||||++||+.+...+.+.+ .....+.|+|++||+++.+..||++++|++|++++.|+++++.+. ...|.+.+
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 256 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSSKL 256 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHHHH
Confidence 99999999999999999888754 455567899999999999988999999999999999999999864 33455444
No 121
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-46 Score=365.52 Aligned_cols=222 Identities=25% Similarity=0.420 Sum_probs=189.3
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CCceEEECCEeCCC--CChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--P---TAGLIAIDGIDISS--IGLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~--~~~~ 314 (489)
.|+++|+++.|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+..
T Consensus 12 ~l~i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 58999999999743 59999999999999999999999999999999999987 3 58999999999863 3445
Q ss_pred HhhccceEEcCCCccCccchhhhcCCCCC----Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE----YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
.+|+.++|++|++.+|+.|++||+.+... .. .+++.++++.+++.+++. ..+......|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHH
Confidence 67889999999999998999999976421 12 234566777877765432 2234556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++||||++++|+++||||||++||+.+...+.+.|.+..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999876 9999999999999999999998
Q ss_pred hcCCChH
Q 011281 466 ENKSSSF 472 (489)
Q Consensus 466 ~~~~~~~ 472 (489)
+++...|
T Consensus 243 ~~~~~~~ 249 (259)
T PRK14274 243 SNPDDQR 249 (259)
T ss_pred hCCCCHH
Confidence 7544443
No 122
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.4e-46 Score=384.85 Aligned_cols=220 Identities=25% Similarity=0.399 Sum_probs=194.2
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..++..++++.|+
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4889999999975 35999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEcCCCcc-CccchhhhcCCCC-----------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 322 IIPQDPTM-FEGSVHNNLDPLE-----------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 322 ~v~Q~~~l-f~~ti~~Ni~~~~-----------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
||+|++.+ |+.|++||+.++. ..+.++++++++.+++.++.++. ..+||||||||++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----------~~~LSgGerQRv~ 149 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----------VTSLSGGERQRVL 149 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHH
Confidence 99999987 5679999997642 11245688999999998776543 3468999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|||||+++|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+.. |||+++|++|++++.|+++|++..
T Consensus 150 IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999999998765 57899999999999965 999999999999999999998864
Q ss_pred CCChHHHHH
Q 011281 468 KSSSFAQLV 476 (489)
Q Consensus 468 ~~~~~~~l~ 476 (489)
....+.+
T Consensus 230 --~~l~~~~ 236 (402)
T PRK09536 230 --DTLRAAF 236 (402)
T ss_pred --HHHHHHh
Confidence 2344444
No 123
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-46 Score=375.03 Aligned_cols=214 Identities=21% Similarity=0.306 Sum_probs=184.0
Q ss_pred EEEEEEEEEECCCC---CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC---------
Q 011281 243 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--------- 310 (489)
Q Consensus 243 i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--------- 310 (489)
|+++||+++|++.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997542 248999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CChHHhhccceEEcCCC--ccCccchhhhcCCCC---CCc----HHHHHHHHHHcCCc-HHHHhc
Q 011281 311 ---------------IGLHDLRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLG-NEVRKN 365 (489)
Q Consensus 311 ---------------~~~~~~r~~i~~v~Q~~--~lf~~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~-~~i~~l 365 (489)
.+...+++.|+||+|+| .+|..|++||+.++. ..+ ++++.++++.+++. ++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~- 161 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR- 161 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC-
Confidence 13456788999999986 678889999998752 222 34577888888885 44443
Q ss_pred cccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-
Q 011281 366 EGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID- 443 (489)
Q Consensus 366 ~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~- 443 (489)
...+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+..
T Consensus 162 ----------~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 162 ----------SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred ----------ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 345689999999999999999999999999999999999999999998764 47899999999998765
Q ss_pred cCEEEEEeCCEEEEecChhHHhhc
Q 011281 444 SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 444 ~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
||||++|++|+|++.|+.+++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998764
No 124
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.3e-46 Score=376.50 Aligned_cols=212 Identities=26% Similarity=0.400 Sum_probs=185.5
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.++++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+.||
T Consensus 7 ~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig 83 (306)
T PRK13537 7 PIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVG 83 (306)
T ss_pred eEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEE
Confidence 5899999999974 35999999999999999999999999999999999999999999999999997654 45788999
Q ss_pred EEcCCCccCc-cchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~-~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
|+||++.+|. .|++||+.+.. ..+ .+++.++++.+++.++. ++++ .+||||||||++||||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrl~la~a 152 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-------DAKV----GELSGGMKRRLTLARA 152 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-------cCch----hhCCHHHHHHHHHHHH
Confidence 9999999986 59999997521 122 23556778888776543 3444 3589999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|+++|++++|||||++||+.+.+.+++.|+++. +++|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999998865 47899999999999976 999999999999999999999754
No 125
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-46 Score=372.53 Aligned_cols=214 Identities=25% Similarity=0.385 Sum_probs=183.5
Q ss_pred EEEEEEEEEECCCC---CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----ChHH
Q 011281 243 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLHD 315 (489)
Q Consensus 243 i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 315 (489)
++++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997432 3599999999999999999999999999999999999999999999999998653 2456
Q ss_pred hhccceEEcCCC--ccCccchhhhcCCCC---CCcH----HHHHHHHHHcCCc-HHHHhccccccchhhcCCCCCCchHH
Q 011281 316 LRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 316 ~r~~i~~v~Q~~--~lf~~ti~~Ni~~~~---~~~~----~~~~~~~~~~~l~-~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
+|+.|+||||+| .+|+.|++||+.++. ..+. +++.++++.+++. +.. .....+||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq~ 151 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVM-----------SQSPFQMSGGQM 151 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh-----------hCCcccCCHHHH
Confidence 788999999997 588889999998742 1232 3455666666664 222 344567899999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 462 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 462 (489)
||++|||||+.+|+++||||||++||+.+...+.+.+.++. .+.|+|+|||+++.+.. ||||++|++|+|++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998764 47899999999999865 9999999999999999999
Q ss_pred HHhhc
Q 011281 463 RLLEN 467 (489)
Q Consensus 463 el~~~ 467 (489)
++.+.
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 98764
No 126
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-46 Score=373.15 Aligned_cols=215 Identities=25% Similarity=0.373 Sum_probs=184.2
Q ss_pred EEEEEEEEEECCCC---CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC----CChHH
Q 011281 243 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----IGLHD 315 (489)
Q Consensus 243 i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 315 (489)
++++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.. .....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997532 359999999999999999999999999999999999999999999999999863 23456
Q ss_pred hhccceEEcCCC--ccCccchhhhcCCCC---CCcH----HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 316 LRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 316 ~r~~i~~v~Q~~--~lf~~ti~~Ni~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
.|+.|+||+|+| .+|+.|++||+.++. ..+. +++.++++.+++.+.+. ......|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 788899999998 688889999997642 1222 35677888888863221 2234568999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~e 463 (489)
|++|||||+.+|+++||||||++||+.+...+.+.++++. .+.|||+|||+++.+.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998764 37899999999999875 99999999999999999999
Q ss_pred Hhhc
Q 011281 464 LLEN 467 (489)
Q Consensus 464 l~~~ 467 (489)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8653
No 127
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-46 Score=364.26 Aligned_cols=222 Identities=23% Similarity=0.401 Sum_probs=189.3
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcC---CCC--CCceEEECCEeCCCC--ChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI---VEP--TAGLIAIDGIDISSI--GLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~---~~~--~~G~i~~~g~~~~~~--~~~ 314 (489)
.++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5889999999965 3589999999999999999999999999999999997 454 589999999998653 345
Q ss_pred HhhccceEEcCCCccCccchhhhcCCCC---CC-----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~-----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
.+++.++|+||++.+|+.|+++|+.++. .. .++++.++++.+++.+++. +........|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHHH
Confidence 6788899999999999889999997531 11 2345677888888765443 2234556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999987667899999999999865 9999999999999999999998
Q ss_pred hcCCChH
Q 011281 466 ENKSSSF 472 (489)
Q Consensus 466 ~~~~~~~ 472 (489)
+++...+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14245 234 TNPEKEA 240 (250)
T ss_pred cCCCChH
Confidence 7644333
No 128
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-46 Score=366.79 Aligned_cols=220 Identities=25% Similarity=0.439 Sum_probs=187.8
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCh
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IGL 313 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 313 (489)
..++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 20 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 20 HILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred ceEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 35899999999974 359999999999999999999999999999999999864 799999999999864 334
Q ss_pred HHhhccceEEcCCCccCccchhhhcCCCC---C--C---cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 314 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---E--Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 314 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~--~---~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
..+++.++|++|++.+|+.|+++|+.+.. . . .++.+.++++.+++.+.+. ........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 46788899999999999999999997531 1 1 1244677788877754322 233455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
||++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||||++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999998775 999999999999999999999
Q ss_pred hhcCC
Q 011281 465 LENKS 469 (489)
Q Consensus 465 ~~~~~ 469 (489)
..++.
T Consensus 251 ~~~~~ 255 (268)
T PRK14248 251 FTSPK 255 (268)
T ss_pred HhCCC
Confidence 87543
No 129
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-46 Score=364.86 Aligned_cols=223 Identities=26% Similarity=0.397 Sum_probs=188.4
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IGLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~~ 314 (489)
.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 359999999999999999999999999999999999997 479999999999854 3345
Q ss_pred HhhccceEEcCCCccCccchhhhcCCCC---CC-----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~-----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
.+++.++|++|++.+|+.|++||+.++. .. .++++.++++.+++.+... ........+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhCCHHHHH
Confidence 6788899999999999999999997531 11 1245667778877753211 1223455789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++||||++++|+++||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887667899999999999876 9999999999999999999998
Q ss_pred hcCCChHH
Q 011281 466 ENKSSSFA 473 (489)
Q Consensus 466 ~~~~~~~~ 473 (489)
..+...|.
T Consensus 235 ~~~~~~~~ 242 (251)
T PRK14251 235 IAPKKQIT 242 (251)
T ss_pred hCCCCHHH
Confidence 65443443
No 130
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.4e-46 Score=364.46 Aligned_cols=217 Identities=25% Similarity=0.401 Sum_probs=186.2
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----------
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---------- 312 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~---------- 312 (489)
|+++||+++|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 478999999974 35999999999999999999999999999999999999999999999999986543
Q ss_pred ---hHHhhccceEEcCCCccCc-cchhhhcCCCC----CC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCC
Q 011281 313 ---LHDLRSRLSIIPQDPTMFE-GSVHNNLDPLE----EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 380 (489)
Q Consensus 313 ---~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~L 380 (489)
...+|+.++|++|++.+|+ .|+.||+.++. .. .++++.++++.+++.+++++. ...|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~L 147 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-----------PAQL 147 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-----------hhhc
Confidence 2356888999999999886 69999997631 11 134567778888776655443 3568
Q ss_pred CchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEE
Q 011281 381 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEE 457 (489)
Q Consensus 381 SgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 457 (489)
|||||||++|||||+++|+++||||||++||+.+...+.+.|.+..+ +.|+|+|||+++.+.. |||+++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987643 7899999999999865 99999999999999
Q ss_pred ecChhHHhhcCCChH
Q 011281 458 FDSPTRLLENKSSSF 472 (489)
Q Consensus 458 ~g~~~el~~~~~~~~ 472 (489)
.|+++++.+.+...+
T Consensus 228 ~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 228 QGKPDEIFRQPKEER 242 (252)
T ss_pred eCCHHHHhcCCCcHH
Confidence 999999987544334
No 131
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-47 Score=361.32 Aligned_cols=216 Identities=25% Similarity=0.389 Sum_probs=189.7
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE---eCCCCChHHhhc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI---DISSIGLHDLRS 318 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~---~~~~~~~~~~r~ 318 (489)
+|.++|++..|+.. .+++|||++|+.||.+|+.||||||||||+++|+|+..|+.|.|.+||. |.+... .-.+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhc
Confidence 47788999888754 5899999999999999999999999999999999999999999999999 555432 2346
Q ss_pred cceEEcCCCccCc-cchhhhcCCCCC---------CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH
Q 011281 319 RLSIIPQDPTMFE-GSVHNNLDPLEE---------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388 (489)
Q Consensus 319 ~i~~v~Q~~~lf~-~ti~~Ni~~~~~---------~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl 388 (489)
+||+|+|+.-+|. .||++||.|+-. ..+.++.+.++.++|...-++-|. +||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~-----------QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA-----------QLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch-----------hcChHHHHHH
Confidence 7999999999885 699999998631 235678888999999988887775 4699999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 389 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 389 ~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
||||||+.+|++|+||||+++||+...+.+..-|++.. -+.|+++|||+.+.+.. ||||++|++|+|.+.|+++|+.
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 99999999999999999999999999999988887643 37899999999998776 9999999999999999999999
Q ss_pred hcCCChH
Q 011281 466 ENKSSSF 472 (489)
Q Consensus 466 ~~~~~~~ 472 (489)
..+++.|
T Consensus 227 ~~P~s~f 233 (345)
T COG1118 227 DHPASRF 233 (345)
T ss_pred cCCCccc
Confidence 8877665
No 132
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.8e-46 Score=360.57 Aligned_cols=211 Identities=25% Similarity=0.351 Sum_probs=181.7
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. .++.++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 689999999964 3599999999999999999999999999999999999999999999999998776543 3458999
Q ss_pred EcCCCccC-ccchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMF-EGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf-~~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++|++.+| ..|+++|+.+.. ... .+++.+.++..++.+. .......||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 99999885 569999997531 122 2345566666666443 3344557999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
+++|+++||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999998764 47899999999999988999999999999999999999864
No 133
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=4.7e-46 Score=365.99 Aligned_cols=224 Identities=25% Similarity=0.331 Sum_probs=186.9
Q ss_pred EEEEEEEEEECCC-------CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH
Q 011281 243 VDIHGLQVRYAPH-------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD 315 (489)
Q Consensus 243 i~~~~v~~~y~~~-------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~ 315 (489)
|+++||+++|++. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999642 346999999999999999999999999999999999999999999999999998776543
Q ss_pred ---hhccceEEcCCCc--cCc-cchhhhcCCC----CC----CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCC
Q 011281 316 ---LRSRLSIIPQDPT--MFE-GSVHNNLDPL----EE----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 381 (489)
Q Consensus 316 ---~r~~i~~v~Q~~~--lf~-~ti~~Ni~~~----~~----~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LS 381 (489)
+|+.|+|++|++. +++ .|++||+.+. .. ..++++.++++.+++.+.. .......||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED----------ADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh----------hhCChhhCC
Confidence 5778999999983 444 5999998531 11 1234567778888774221 223445789
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEe
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEF 458 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 458 (489)
||||||++||||++.+|++|||||||++||+.+++.+.+.|.++.+ ++|+|+|||+++.+.. ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999987643 7899999999999985 999999999999999
Q ss_pred cChhHHhhcCCChHHHHH
Q 011281 459 DSPTRLLENKSSSFAQLV 476 (489)
Q Consensus 459 g~~~el~~~~~~~~~~l~ 476 (489)
|+++++...++..++.+.
T Consensus 233 g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred CCHHHHcCCCCHHHHHHH
Confidence 999999875343444444
No 134
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-46 Score=365.81 Aligned_cols=222 Identities=25% Similarity=0.395 Sum_probs=188.3
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCCC--h
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIG--L 313 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~--~ 313 (489)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ .
T Consensus 11 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 11 PQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 35999999999964 3589999999999999999999999999999999999985 7999999999986432 3
Q ss_pred HHhhccceEEcCCCccCccchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 314 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 314 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
..+++.++|++|++.+|+.|++||+.+.. ..+ ++++.++++.+++.+++. .........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHHH
Confidence 45678899999999999899999997531 122 234677888888754321 1223445679999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999887667899999999999876 9999999999999999999998
Q ss_pred hcCCCh
Q 011281 466 ENKSSS 471 (489)
Q Consensus 466 ~~~~~~ 471 (489)
+++...
T Consensus 242 ~~~~~~ 247 (258)
T PRK14268 242 HNPREK 247 (258)
T ss_pred cCCCCH
Confidence 654333
No 135
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-46 Score=357.24 Aligned_cols=202 Identities=28% Similarity=0.429 Sum_probs=177.6
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|++++|++. ++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 4789999999653 5999999999999 99999999999999999999999999999999999987766 667889999
Q ss_pred EcCCCccCcc-chhhhcCCC---CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++|++.+|.. |++||+.+. ...+ .+++.++++.+++.++.+.. ...||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKK-----------IGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCc-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999886 999999752 1111 34577888888887654432 246899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
+.+|+++||||||++||+.+.+.+.+.|.+..+++|+|+|||+++.+.. |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999887667999999999999875 9999999999998765
No 136
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-46 Score=370.79 Aligned_cols=214 Identities=29% Similarity=0.412 Sum_probs=186.3
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC--CCChHHhhcc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--SIGLHDLRSR 319 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 319 (489)
.|+++|++++|+++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 48999999999633 35999999999999999999999999999999999999999999999999984 3345668889
Q ss_pred ceEEcCCC--ccCccchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 320 LSIIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 320 i~~v~Q~~--~lf~~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
++|++|++ .+|+.|++||+.++. ..+ .+++.++++.+++.++.+ ....+||||||||++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHHH
Confidence 99999998 567889999997631 122 245777888888876543 3356789999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
||||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999987643 7899999999999875 999999999999999999998763
No 137
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.9e-46 Score=355.71 Aligned_cols=202 Identities=22% Similarity=0.351 Sum_probs=178.1
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|++++|++ .++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 468999999964 3599999999999999999999999999999999999999999999999988654 456788999
Q ss_pred EcCCCccCc-cchhhhcCCC---CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 323 IPQDPTMFE-GSVHNNLDPL---EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~---~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
++|++.+|+ .|++||+.+. ...+++++.++++..++.+..++. ...||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcCC
Confidence 999998885 6999999753 123466788899999987765443 3458999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
+++||||||++||+.+.+.+.+.+.+.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999998764 47899999999999876 9999999999998765
No 138
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.9e-46 Score=367.30 Aligned_cols=223 Identities=21% Similarity=0.333 Sum_probs=189.8
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH---Hhhc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLRS 318 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 318 (489)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5899999999964 3589999999999999999999999999999999999999999999999998776543 3577
Q ss_pred cceEEcCCCccCcc-chhhhcCCC----CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 319 RLSIIPQDPTMFEG-SVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~-ti~~Ni~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
.++|++|++.+|+. |+.||+.+. ...+ .+++.++++.+++.+..+.. ...||||||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~ 153 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM-----------PSELSGGMARRAA 153 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999986 999999652 1122 23566678888876654433 3468999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
|||||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999987642 7899999999998876 99999999999999999999987
Q ss_pred cCCChHHHHHH
Q 011281 467 NKSSSFAQLVA 477 (489)
Q Consensus 467 ~~~~~~~~l~~ 477 (489)
.+...++.++.
T Consensus 234 ~~~~~~~~~~~ 244 (269)
T PRK11831 234 NPDPRVRQFLD 244 (269)
T ss_pred CCcHHHHHHHH
Confidence 54344555554
No 139
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-46 Score=357.13 Aligned_cols=208 Identities=25% Similarity=0.358 Sum_probs=181.3
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|++++|++ ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEE
Confidence 478999999965 3599999999999999999999999999999999999999999999999988653 3566788999
Q ss_pred EcCCCccCcc-chhhhcCCC---CCC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFEG-SVHNNLDPL---EEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~---~~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++|++.+|+. |+++|+.+. ... .++++.++++.+++.++.++.| ..||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999998875 999999652 111 2346788899998877655443 35899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
+.+|+++||||||++||+.+.+.+.+.|.+.. + ++|+|++||+++.+.. ||||++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999998764 3 7899999999999876 999999999999999988764
No 140
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-46 Score=367.74 Aligned_cols=215 Identities=27% Similarity=0.415 Sum_probs=188.0
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.++++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999743346999999999999999999999999999999999999999999999999998777777889999
Q ss_pred EEcCCCc--cCccchhhhcCCCC---CCcH----HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 322 IIPQDPT--MFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 322 ~v~Q~~~--lf~~ti~~Ni~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
|++|++. ++..|++||+.+.. ..+. +++.++++.+++.++.++.+ .+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------ccCCHHHHHHHHHHH
Confidence 9999983 45679999997631 1222 24677788888877665543 578999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
||+++|+++||||||++||+.+.+.+.+.|.++. + ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999998764 3 4899999999999888999999999999999999988764
No 141
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-46 Score=364.88 Aligned_cols=221 Identities=26% Similarity=0.433 Sum_probs=188.3
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCCCC--hHH
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSIG--LHD 315 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~~--~~~ 315 (489)
-+++||+++|++ +++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 468999999964 358999999999999999999999999999999999986 47999999999886543 235
Q ss_pred hhccceEEcCCCccCccchhhhcCCCC---CC------cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 316 LRSRLSIIPQDPTMFEGSVHNNLDPLE---EY------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 316 ~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~------~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
+|+.++|++|++.+|+.|+++|+.+.. .. .++++.++++.+++.+++. +.+...+..|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHHH
Confidence 688999999999999899999997531 11 1345667888888765432 2344556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++||||++++|+++||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999887668999999999999876 9999999999999999999998
Q ss_pred hcCCChH
Q 011281 466 ENKSSSF 472 (489)
Q Consensus 466 ~~~~~~~ 472 (489)
+.+...+
T Consensus 237 ~~~~~~~ 243 (251)
T PRK14244 237 KNPQSSK 243 (251)
T ss_pred cCCCChH
Confidence 7644433
No 142
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2e-46 Score=358.06 Aligned_cols=205 Identities=24% Similarity=0.390 Sum_probs=177.7
Q ss_pred EEEEEEEEEECCCC--CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 243 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 243 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
++++||+++|++.. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+++.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999997532 159999999999999999999999999999999999999999999999999875 345678899
Q ss_pred eEEcCCCccCcc-chhhhcCCCC---CC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~---~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
+|++|++.+|+. |++||+.+.. .. ..+++.++++.+++.+...+ ....||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999985 9999996521 11 23456778888887665443 34568999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
|++.+|+++||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998764 47899999999998876 9999999999998764
No 143
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-46 Score=381.32 Aligned_cols=217 Identities=23% Similarity=0.381 Sum_probs=190.9
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++ .++.+
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999964 358999999999999999999999999999999999999999999999999987654 47789
Q ss_pred eEEcCCCccCcc-chhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
+||+|++.+|+. |++||+.++. ..+ .+++.++++.+++.++.++.|. .||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~-----------~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH-----------QLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh-----------hCCHHHHHHHHHHH
Confidence 999999999975 9999998742 122 3467788999999877666654 56999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 469 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~ 469 (489)
||+++|++||||||||+||+.+++.+.+.+++.. .+.|+|+|||+++.+.. ||||++|++|++++.|+++|+..++.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 9999999999999999999999999998887653 37899999999998765 99999999999999999999998765
Q ss_pred ChH
Q 011281 470 SSF 472 (489)
Q Consensus 470 ~~~ 472 (489)
..|
T Consensus 243 ~~~ 245 (377)
T PRK11607 243 TRY 245 (377)
T ss_pred cHH
Confidence 544
No 144
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-46 Score=358.92 Aligned_cols=204 Identities=25% Similarity=0.304 Sum_probs=177.1
Q ss_pred EEEEEEEEEECCCC--CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 243 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 243 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
++++|++++|++.. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997521 359999999999999999999999999999999999999999999999998863 46789
Q ss_pred eEEcCCCccCc-cchhhhcCCCC---CC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 321 SIIPQDPTMFE-GSVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 321 ~~v~Q~~~lf~-~ti~~Ni~~~~---~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
+|++|++.+|+ .|++||+.+.. .. .++++.++++.+++.++..+.| ..||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999987 59999997531 11 2356778888888877665544 457999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEe--CCEEEEecChh
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLS--YGLIEEFDSPT 462 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~--~G~i~~~g~~~ 462 (489)
||+++|+++||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999998763 37899999999998765 99999999 79999988753
No 145
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-46 Score=362.89 Aligned_cols=219 Identities=28% Similarity=0.411 Sum_probs=186.7
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCC--CC---CCceEEECCEeCCCC--ChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EP---TAGLIAIDGIDISSI--GLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~--~~---~~G~i~~~g~~~~~~--~~~ 314 (489)
.++++||+++|++. .+++|+||++++||+++|+||||||||||+++|+|++ +| ++|+|.++|+++... +..
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 48999999999743 5899999999999999999999999999999999995 36 499999999998643 334
Q ss_pred HhhccceEEcCCCccCccchhhhcCCCC---C-C----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---E-Y----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~-~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
.+|+.++|++|++.+|+.|++||+.++. . . .++++.++++.+++.+.+. +.......+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHHH
Confidence 5788899999999999999999997521 1 1 1345566788887755432 2345556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++||||++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887667899999999998765 9999999999999999999998
Q ss_pred hcCC
Q 011281 466 ENKS 469 (489)
Q Consensus 466 ~~~~ 469 (489)
+.+.
T Consensus 236 ~~~~ 239 (252)
T PRK14239 236 MNPK 239 (252)
T ss_pred hCCC
Confidence 7543
No 146
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-46 Score=364.40 Aligned_cols=219 Identities=25% Similarity=0.427 Sum_probs=190.2
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCh
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IGL 313 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 313 (489)
..|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 46999999999964 359999999999999999999999999999999999997 589999999999864 334
Q ss_pred HHhhccceEEcCCCccCccchhhhcCCCC---CC-----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 314 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 314 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~-----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
..+|+.++|++|++.+|+.|++||+.++. .. .++++.++++.+++.+++. ..+......||||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQQ 169 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHHH
Confidence 56788999999999999899999997631 11 1345677788888865543 234566778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
||++||||++++|+++||||||++||+.+.+.+.+.|.++.++.|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999998865 999999999999999999999
Q ss_pred hhcC
Q 011281 465 LENK 468 (489)
Q Consensus 465 ~~~~ 468 (489)
...+
T Consensus 250 ~~~~ 253 (267)
T PRK14237 250 FTNP 253 (267)
T ss_pred hcCC
Confidence 7653
No 147
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-46 Score=361.27 Aligned_cols=219 Identities=27% Similarity=0.436 Sum_probs=188.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IGLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~~~ 314 (489)
.|+++||+++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+..
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 3 KISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred eEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 58999999999753 599999999999999999999999999999999999763 69999999999864 3445
Q ss_pred HhhccceEEcCCCccCccchhhhcCCCC---CC-----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~-----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
.+|+.++|++|++.+|+.|+++|+.++. .. .++++.++++.+++.+.+. .........|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 153 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQQ 153 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHHH
Confidence 6788999999999999899999997632 11 1345667777887754432 2334556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++|||||+.+|+++||||||++||+.+...+.+.|.+..+++|+|++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887667899999999998876 9999999999999999999998
Q ss_pred hcCC
Q 011281 466 ENKS 469 (489)
Q Consensus 466 ~~~~ 469 (489)
..+.
T Consensus 234 ~~~~ 237 (250)
T PRK14240 234 TNPK 237 (250)
T ss_pred hCCC
Confidence 6543
No 148
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-46 Score=367.27 Aligned_cols=213 Identities=24% Similarity=0.396 Sum_probs=185.9
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC-hHHhhccce
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDLRSRLS 321 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i~ 321 (489)
++++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 6899999999643 34999999999999999999999999999999999999999999999999997765 356788999
Q ss_pred EEcCCCc--cCccchhhhcCCCCC---Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 322 IIPQDPT--MFEGSVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 322 ~v~Q~~~--lf~~ti~~Ni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
|++|+|. ++..|+++|+.+... .+ ++++.++++.+++.++.+..| ..||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LS~G~~qrv~lar 149 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP-----------KTLSGGQGQCVALAG 149 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 9999985 566799999976421 12 345677788888876655433 468999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
||+.+|+++||||||++||+.+...+.+.++++. ++.|+|++||+++.+..||||++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998764 47899999999999988999999999999999999988653
No 149
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-46 Score=367.53 Aligned_cols=214 Identities=22% Similarity=0.337 Sum_probs=188.4
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.++++||+++|++.. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 3 ~l~~~~l~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 378999999996433 4999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEcCCCc--cCccchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 322 IIPQDPT--MFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 322 ~v~Q~~~--lf~~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
|++|++. +|+.|+++|+.+.. ..+ ++++.++++.+++.++..+.| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 9999983 67789999997532 122 245778899999887766554 367999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
||+.+|+++||||||++||+.+.+.+.+.++++.+ +.|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999987643 7899999999999864 999999999999999999998753
No 150
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=360.60 Aligned_cols=219 Identities=26% Similarity=0.423 Sum_probs=189.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCEeCCCC--ChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGLIAIDGIDISSI--GLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~~--~~~ 314 (489)
.++++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 4889999999974 35999999999999999999999999999999999999997 69999999998643 345
Q ss_pred HhhccceEEcCCCccCccchhhhcCCCC---CC-c----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
.+|+.++|++|++.+|+.|++||+.+.. .. . ++.+.++++.+++.+++. ........+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHHH
Confidence 6788999999999999889999997642 11 1 234566677777765443 2345667889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++|||||+.+|+++||||||++||+.+...+.+.|.++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887667899999999999887 8999999999999999999997
Q ss_pred hcCC
Q 011281 466 ENKS 469 (489)
Q Consensus 466 ~~~~ 469 (489)
..+.
T Consensus 235 ~~~~ 238 (251)
T PRK14249 235 SRPR 238 (251)
T ss_pred hCCC
Confidence 6543
No 151
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-46 Score=373.37 Aligned_cols=224 Identities=24% Similarity=0.341 Sum_probs=189.9
Q ss_pred cEEEEEEEEEECCC--------CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh
Q 011281 242 EVDIHGLQVRYAPH--------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL 313 (489)
Q Consensus 242 ~i~~~~v~~~y~~~--------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~ 313 (489)
-|+++||++.|+.. ...+++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2358999999999999999999999999999999999999999999999999988765
Q ss_pred H---HhhccceEEcCCCc--cCc-cchhhhcCC----CCCC----cHHHHHHHHHHcCCcH-HHHhccccccchhhcCCC
Q 011281 314 H---DLRSRLSIIPQDPT--MFE-GSVHNNLDP----LEEY----ADEEIWEALDKCQLGN-EVRKNEGKLESRVTENGE 378 (489)
Q Consensus 314 ~---~~r~~i~~v~Q~~~--lf~-~ti~~Ni~~----~~~~----~~~~~~~~~~~~~l~~-~i~~l~~gldt~vge~G~ 378 (489)
+ .+|+.|+||+|+|. +++ .|+.+|+.. .... ..+++.++++.+++.+ ..++ ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~p~ 153 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDR-----------YPH 153 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcC-----------CCc
Confidence 3 46788999999994 555 388888742 1111 2356788899998853 2222 235
Q ss_pred CCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEE
Q 011281 379 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLI 455 (489)
Q Consensus 379 ~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 455 (489)
.||||||||++|||||+.+|++||+||||++||+.++..+.+.|.++. .+.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 689999999999999999999999999999999999999999998764 37899999999999986 999999999999
Q ss_pred EEecChhHHhhcCCChHHHHH
Q 011281 456 EEFDSPTRLLENKSSSFAQLV 476 (489)
Q Consensus 456 ~~~g~~~el~~~~~~~~~~l~ 476 (489)
++.|+.+++.+++..+|.+.+
T Consensus 234 ve~g~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 234 VEKGTKEQIFNNPRHPYTQAL 254 (327)
T ss_pred EEECCHHHHhcCCCCHHHHHH
Confidence 999999999987666676544
No 152
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-46 Score=366.68 Aligned_cols=215 Identities=24% Similarity=0.380 Sum_probs=188.2
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.++++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 58999999999754345899999999999999999999999999999999999999999999999998888778899999
Q ss_pred EEcCCCc-cC-ccchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 322 IIPQDPT-MF-EGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 322 ~v~Q~~~-lf-~~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
|++|+|. +| ..|+++|+.+.. ... .+++.++++.+++.++.+. ...+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHH
Confidence 9999985 44 458999987641 111 2456778888888765543 24568999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|++.+|+++||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+..||||++|++|++++.|+++++...
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999987642 7899999999999888999999999999999999998764
No 153
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.9e-46 Score=359.65 Aligned_cols=213 Identities=23% Similarity=0.347 Sum_probs=184.1
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC--hHHhhccc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG--LHDLRSRL 320 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~r~~i 320 (489)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999964 35999999999999999999999999999999999999999999999999987643 34668889
Q ss_pred eEEcCCCccCc-cchhhhcCCCC----CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 321 SIIPQDPTMFE-GSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 321 ~~v~Q~~~lf~-~ti~~Ni~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
+|++|++.+|. .|+++|+.+.. ... ++++.++++..++.+..++. ...||||||||++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~la 148 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHY-----------PSELSGGQQQRVAIA 148 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcC-----------hhhcCHHHHHHHHHH
Confidence 99999999886 59999997632 111 23456677777776554433 356899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 468 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~ 468 (489)
||++++|+++||||||++||+.+...+.+.|.++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999999999998764 47899999999999976 9999999999999999999987653
No 154
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5e-46 Score=355.41 Aligned_cols=210 Identities=20% Similarity=0.313 Sum_probs=187.0
Q ss_pred EEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh----HHhhcc
Q 011281 244 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL----HDLRSR 319 (489)
Q Consensus 244 ~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~r~~ 319 (489)
.+.|++|+|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 467999999865 459999999999999999999999999999999999999999999999998876542 235678
Q ss_pred ceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 399 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ 399 (489)
++|++|++.+|+.|++||+.+.....+++..++++.+++.+++..+|.|+++.++....+||||||||++||||++++|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999889999998765445666788899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCE
Q 011281 400 VLVLDEATASVDTATDNLIQH--TLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGL 454 (489)
Q Consensus 400 illlDEpts~lD~~~~~~i~~--~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 454 (489)
++||||||++||+.+.+.+.+ .+.... .+.|+|++||+++.+..||++++|++|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999988887 444433 3689999999999998899999999884
No 155
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-45 Score=361.03 Aligned_cols=222 Identities=24% Similarity=0.416 Sum_probs=189.3
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CCceEEECCEeCCCC--Ch
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--P---TAGLIAIDGIDISSI--GL 313 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~~--~~ 313 (489)
+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... +.
T Consensus 3 ~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 35899999999974 359999999999999999999999999999999999986 4 689999999998643 34
Q ss_pred HHhhccceEEcCCCccCc-cchhhhcCCC----CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchH
Q 011281 314 HDLRSRLSIIPQDPTMFE-GSVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 384 (489)
Q Consensus 314 ~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq 384 (489)
..+|+.++|++|++.+|+ .|++||+.++ ...+ ++++.++++.+++.+++.. ........|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHHH
Confidence 467889999999999998 5999999752 1111 2456778888888765432 2234567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 011281 385 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 385 ~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~e 463 (489)
|||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|+|++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999865 99999999999999999999
Q ss_pred HhhcCCCh
Q 011281 464 LLENKSSS 471 (489)
Q Consensus 464 l~~~~~~~ 471 (489)
+...+...
T Consensus 234 ~~~~~~~~ 241 (252)
T PRK14256 234 IFTTPEKK 241 (252)
T ss_pred HHhCCCcH
Confidence 98764433
No 156
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.6e-46 Score=359.74 Aligned_cols=211 Identities=25% Similarity=0.414 Sum_probs=180.9
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh-hccce
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRLS 321 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~ 321 (489)
++++||+++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCCE--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 4689999999643 59999999999999999999999999999999999999999999999999887765553 56799
Q ss_pred EEcCCCccCcc-chhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
|++|++.+|++ |++||+.+.. ... .+++.++++..++.+.. ......||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLR-----------KSKASSLSGGERRRVEIARA 147 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHHHHH
Confidence 99999999986 9999997531 111 23455666666665433 33446789999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999998764 47899999999987776 99999999999999999999865
No 157
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.4e-46 Score=357.30 Aligned_cols=203 Identities=26% Similarity=0.378 Sum_probs=174.5
Q ss_pred EEEEEEEEEECCCC--CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---hh
Q 011281 243 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LR 317 (489)
Q Consensus 243 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 317 (489)
++++||+++|++.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996431 35899999999999999999999999999999999999999999999999998776543 34
Q ss_pred -ccceEEcCCCccCc-cchhhhcCCC---CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH
Q 011281 318 -SRLSIIPQDPTMFE-GSVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388 (489)
Q Consensus 318 -~~i~~v~Q~~~lf~-~ti~~Ni~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl 388 (489)
+.++|++|++.+|+ .|++||+.+. .... .+++.++++.+++.+..++.| ..||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP-----------SELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHH
Confidence 67999999999986 5999999752 1111 235667788877766544433 56899999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCEEE
Q 011281 389 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIE 456 (489)
Q Consensus 389 ~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 456 (489)
+||||++++|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998764 378999999999999889999999999986
No 158
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-46 Score=368.63 Aligned_cols=214 Identities=25% Similarity=0.386 Sum_probs=189.2
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---ceEEECCEeCCCCChHHhhc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA---GLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~r~ 318 (489)
.|+++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 589999999997543459999999999999999999999999999999999999988 89999999998777777888
Q ss_pred cceEEcCCCc--cCccchhhhcCCCC---CCcH----HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 319 RLSIIPQDPT--MFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 319 ~i~~v~Q~~~--lf~~ti~~Ni~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
.++|++|++. +++.|++||+.+.. ..+. +++.++++.+++.++.+..| .+||||||||++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv~ 153 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRVA 153 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHH
Confidence 9999999984 56789999997641 1222 45778899999887766555 467999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
|||||+.+|+++||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998764 2789999999999998899999999999999999998865
No 159
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6.2e-46 Score=360.41 Aligned_cols=212 Identities=24% Similarity=0.342 Sum_probs=184.7
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh-hccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 320 (489)
.|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3789999999975 359999999999999999999999999999999999999999999999999887765543 4579
Q ss_pred eEEcCCCccCcc-chhhhcCCCCC---------------CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLEE---------------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 384 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~~---------------~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq 384 (489)
+|++|++.+|++ |++||+.+... ..++++.++++..++.+... .....|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEAD-----------RLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHH
Confidence 999999999986 99999976311 01345667777777655432 3345689999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 011281 385 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 385 ~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~e 463 (489)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999986 99999999999999999999
Q ss_pred Hhh
Q 011281 464 LLE 466 (489)
Q Consensus 464 l~~ 466 (489)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 875
No 160
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.9e-46 Score=345.02 Aligned_cols=178 Identities=34% Similarity=0.547 Sum_probs=164.6
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999976434599999999999999999999999999999999999999999999999988665 5567889999
Q ss_pred EcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEE
Q 011281 323 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 402 (489)
Q Consensus 323 v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ill 402 (489)
++|++.+|+.|++||+ ...||||||||++||||++++|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 45689999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 011281 403 LDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 459 (489)
Q Consensus 403 lDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 459 (489)
|||||++||+.+.+.+.+.+.+..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999998876688999999999999889999999999998764
No 161
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-46 Score=360.32 Aligned_cols=213 Identities=22% Similarity=0.336 Sum_probs=182.6
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC------CCChHH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS------SIGLHD 315 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~------~~~~~~ 315 (489)
.++++|++++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ......
T Consensus 2 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECCe--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 37899999999653 5999999999999999999999999999999999999999999999999873 123456
Q ss_pred hhccceEEcCCCccCcc-chhhhcCCC----CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 316 LRSRLSIIPQDPTMFEG-SVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 316 ~r~~i~~v~Q~~~lf~~-ti~~Ni~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
+|+.++|++|++.+|++ |++||+.+. .... .+++.++++..++.+++.+.| ..|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP-----------LHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHH
Confidence 78899999999999875 999999632 1111 234666777777766555443 468999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
|++||||++++|+++||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999998765 47899999999999876 999999999999999999987
Q ss_pred hhc
Q 011281 465 LEN 467 (489)
Q Consensus 465 ~~~ 467 (489)
.+.
T Consensus 229 ~~~ 231 (242)
T PRK11124 229 TQP 231 (242)
T ss_pred cCc
Confidence 643
No 162
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=364.30 Aligned_cols=224 Identities=26% Similarity=0.420 Sum_probs=188.6
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CC
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IG 312 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 312 (489)
...++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 22 ~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 4469999999999743 58999999999999999999999999999999999987 699999999999853 34
Q ss_pred hHHhhccceEEcCCCccCccchhhhcCCCC---CCc-----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchH
Q 011281 313 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EYA-----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 384 (489)
Q Consensus 313 ~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~~-----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq 384 (489)
...+++.++|++|++.+|..|++||+.++. ... ++.+.++++..++.+. +.......+..|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------l~~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDE-------LKDRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch-------HHHHHhcCcccCCHHH
Confidence 556788999999999999889999997531 221 1234555555554322 2234456677899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 011281 385 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 385 ~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~e 463 (489)
|||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 252 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDK 252 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999887667899999999999876 99999999999999999999
Q ss_pred HhhcCCChH
Q 011281 464 LLENKSSSF 472 (489)
Q Consensus 464 l~~~~~~~~ 472 (489)
+...+...+
T Consensus 253 ~~~~~~~~~ 261 (271)
T PRK14238 253 IFSNPSDKR 261 (271)
T ss_pred HHcCCCCHH
Confidence 987644333
No 163
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-46 Score=365.60 Aligned_cols=212 Identities=26% Similarity=0.354 Sum_probs=187.7
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.++++||+++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++++.++
T Consensus 11 ~l~i~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECCE--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 58999999999743 5999999999999999999999999999999999999999999999999998777778888999
Q ss_pred EEcCCCccCcc-chhhhcCCCC-----------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLE-----------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~-----------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
|++|++.++.. |+.+|+.+.. ...++++.++++.+++.+++...| .+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHH
Confidence 99999877665 9999997531 012346788899998877655544 358999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
||||++.+|+++||||||++||+.+.+.+.+.|.++. .+.|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 9999999999999999999999999999999998764 37899999999999875 99999999999999999999865
No 164
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=8.7e-46 Score=362.57 Aligned_cols=216 Identities=27% Similarity=0.396 Sum_probs=186.5
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC---------
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI--------- 311 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~--------- 311 (489)
+.++++||+++|++ ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 45899999999974 3589999999999999999999999999999999999999999999999988542
Q ss_pred ----ChHHhhccceEEcCCCccCcc-chhhhcCCCC----CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCC
Q 011281 312 ----GLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 378 (489)
Q Consensus 312 ----~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~ 378 (489)
....+++.++|++|++.+|+. |++||+.++. ... ++++.++++..++.++.. .....
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~ 151 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYPV 151 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCcc
Confidence 124567889999999999975 9999997521 111 345677888888766541 23345
Q ss_pred CCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEE
Q 011281 379 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIE 456 (489)
Q Consensus 379 ~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 456 (489)
.||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|+++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 789999999999999999999999999999999999999999998765 47999999999999986 9999999999999
Q ss_pred EecChhHHhhcC
Q 011281 457 EFDSPTRLLENK 468 (489)
Q Consensus 457 ~~g~~~el~~~~ 468 (489)
+.|+++++.+.+
T Consensus 232 ~~~~~~~~~~~~ 243 (257)
T PRK10619 232 EEGAPEQLFGNP 243 (257)
T ss_pred EeCCHHHhhhCc
Confidence 999999987653
No 165
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-46 Score=363.41 Aligned_cols=219 Identities=23% Similarity=0.372 Sum_probs=190.0
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999974 359999999999999999999999999999999999999999999999999987777778888999
Q ss_pred EcCCCccCcc-chhhhcCCCC-----------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 323 IPQDPTMFEG-SVHNNLDPLE-----------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~~-----------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
++|++.+|++ |+.||+.++. ...++++.++++.+++.++.+.. ...||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----------LTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----------cccCCHHHHHHHHH
Confidence 9999998876 9999997631 01234577788888886654433 45689999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 468 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~ 468 (489)
|||++.+|+++||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||++++|++|+++..|+++++...
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~- 228 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP- 228 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH-
Confidence 999999999999999999999999999999998764 47899999999999876 999999999999999999998753
Q ss_pred CChHHHHH
Q 011281 469 SSSFAQLV 476 (489)
Q Consensus 469 ~~~~~~l~ 476 (489)
..+.+.+
T Consensus 229 -~~~~~~~ 235 (255)
T PRK11231 229 -GLLRTVF 235 (255)
T ss_pred -HHHHHHh
Confidence 3344444
No 166
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=360.85 Aligned_cols=225 Identities=25% Similarity=0.389 Sum_probs=191.0
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--ChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSI--GLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~~ 314 (489)
.|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5899999999964 3599999999999999999999999999999999999763 489999999998765 345
Q ss_pred HhhccceEEcCCCccCccchhhhcCCCCC----Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE----YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
..++.++|++|++.+|+.|++||+.+... .. ++++.++++.+++.+.+. +.++.....|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHHH
Confidence 67888999999999998999999986421 11 234566777777654432 3355667789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++||||++.+|+++||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999887667899999999999975 9999999999999999999998
Q ss_pred hcCCChHHHH
Q 011281 466 ENKSSSFAQL 475 (489)
Q Consensus 466 ~~~~~~~~~l 475 (489)
.++...+.+.
T Consensus 237 ~~~~~~~~~~ 246 (253)
T PRK14261 237 ENPHEELTEN 246 (253)
T ss_pred hCCCcHHHHH
Confidence 6544344443
No 167
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.8e-46 Score=354.96 Aligned_cols=202 Identities=22% Similarity=0.370 Sum_probs=175.4
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|++++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++|
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 4689999999753 589999999999999999999999999999999999999999999999998765432 467999
Q ss_pred EcCCCccCc-cchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++|++.+|. .|++||+.++. ... ++++.++++.+++.++.+..| ..||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~laral 145 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999986 59999997631 112 235667788888876655444 46899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
+++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998764 37899999999998876 9999999999999876
No 168
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-46 Score=360.84 Aligned_cols=224 Identities=25% Similarity=0.433 Sum_probs=190.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--ChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSI--GLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~~ 314 (489)
.|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999964 3589999999999999999999999999999999999984 899999999988653 234
Q ss_pred HhhccceEEcCCCccCccchhhhcCCCC----CC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPLE----EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~----~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
.+++.++|++|++.+|+.|++||+.+.. .. .++++.++++.+++.+.+. ........+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHHH
Confidence 5678899999999999999999997631 11 1234667788888765442 2345566789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++||||++++|+++||||||++||+.+...+.+.|.+..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999887667899999999998765 9999999999999999999998
Q ss_pred hcCCChHHH
Q 011281 466 ENKSSSFAQ 474 (489)
Q Consensus 466 ~~~~~~~~~ 474 (489)
+.+...+..
T Consensus 234 ~~~~~~~~~ 242 (250)
T PRK14262 234 ERPKNKLTE 242 (250)
T ss_pred hCCCChHHH
Confidence 654333443
No 169
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=9.8e-46 Score=360.74 Aligned_cols=215 Identities=25% Similarity=0.383 Sum_probs=184.0
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC--------h
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG--------L 313 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--------~ 313 (489)
.++++||+++|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 38899999999743 5999999999999999999999999999999999999999999999999986532 2
Q ss_pred HHhhccceEEcCCCccCc-cchhhhcCCC----CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchH
Q 011281 314 HDLRSRLSIIPQDPTMFE-GSVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 384 (489)
Q Consensus 314 ~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq 384 (489)
..+++.++|++|++.+|+ .|++||+.++ .... .+++.++++..++.+.. ......|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-----------TSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----------hCChhhCChHH
Confidence 456788999999999886 5999999652 1112 23456667777765443 33456789999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 011281 385 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 462 (489)
Q Consensus 385 ~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 462 (489)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998765 47899999999999876 9999999999999999999
Q ss_pred HHhhcCC
Q 011281 463 RLLENKS 469 (489)
Q Consensus 463 el~~~~~ 469 (489)
++.+.+.
T Consensus 230 ~~~~~~~ 236 (250)
T PRK11264 230 ALFADPQ 236 (250)
T ss_pred HHhcCCC
Confidence 9876533
No 170
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-46 Score=366.15 Aligned_cols=215 Identities=23% Similarity=0.353 Sum_probs=188.9
Q ss_pred cEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 242 EVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
.|+++||+++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 23589999999999999999999999999999999999999999999999999877777788999
Q ss_pred eEEcCCCc--cCccchhhhcCCCC---CCcH----HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 321 SIIPQDPT--MFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 321 ~~v~Q~~~--lf~~ti~~Ni~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
+|++|+|. ++..|+.||+.++. ..++ +++.++++.+++.++..+. ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 99999984 56789999997531 2222 3467788888887765543 356899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|||+++|+++||||||++||+.+.+.+.+.+.++.+ +.|+|+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999987653 7899999999999988999999999999999999998754
No 171
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=363.75 Aligned_cols=219 Identities=26% Similarity=0.395 Sum_probs=190.1
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CCh
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IGL 313 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 313 (489)
+.++++|++++|++. .+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 24 ~~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEECCe--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 469999999999643 599999999999999999999999999999999999884 89999999999864 344
Q ss_pred HHhhccceEEcCCCccCccchhhhcCCCC---C--C---cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 314 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---E--Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 314 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~--~---~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
..+|+.++|++|++.+|+.|++||+.+.. . . .++++.++++.+++.+++. +..+..+..||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHHH
Confidence 56788999999999999889999997531 1 1 1245777888888765543 234566788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
||++||||++++|+++||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||||++|++|+|++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999987667899999999999875 999999999999999999999
Q ss_pred hhcC
Q 011281 465 LENK 468 (489)
Q Consensus 465 ~~~~ 468 (489)
.+.+
T Consensus 255 ~~~~ 258 (272)
T PRK14236 255 FTSP 258 (272)
T ss_pred hcCC
Confidence 8653
No 172
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-45 Score=372.18 Aligned_cols=226 Identities=19% Similarity=0.309 Sum_probs=188.3
Q ss_pred EEEEEEEEEECCCC--CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC----CCCceEEECCEeCCCCChHHh
Q 011281 243 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE----PTAGLIAIDGIDISSIGLHDL 316 (489)
Q Consensus 243 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~----~~~G~i~~~g~~~~~~~~~~~ 316 (489)
|+++||++.|+... ..+|+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 78999999997532 248999999999999999999999999999999999997 489999999999988887655
Q ss_pred h----ccceEEcCCCc--cCc-cchhhhc----CCCCC----CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCC
Q 011281 317 R----SRLSIIPQDPT--MFE-GSVHNNL----DPLEE----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 381 (489)
Q Consensus 317 r----~~i~~v~Q~~~--lf~-~ti~~Ni----~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LS 381 (489)
+ +.|+||+|+|. +++ .|+.+++ ..... ...+++.++++.+++.+... .+.....+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS--------RLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhCCchhCC
Confidence 4 36999999995 444 3666554 22211 12456788899998865321 1234456789
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEe
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEF 458 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 458 (489)
||||||++|||||+.+|++||+||||++||+.++..+++.|+++. .+.|+|+|||+++.+.. ||||++|.+|+|++.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998864 37899999999999865 999999999999999
Q ss_pred cChhHHhhcCCChHHHHH
Q 011281 459 DSPTRLLENKSSSFAQLV 476 (489)
Q Consensus 459 g~~~el~~~~~~~~~~l~ 476 (489)
|+.+++.+++..+|...+
T Consensus 236 g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred CCHHHHhhCCCChHHHHH
Confidence 999999987666776544
No 173
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.6e-46 Score=354.60 Aligned_cols=200 Identities=29% Similarity=0.425 Sum_probs=173.4
Q ss_pred EEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEE
Q 011281 244 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 323 (489)
Q Consensus 244 ~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 323 (489)
+++|++++|++..+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999975323599999999999999999999999999999999999999999999999999877777788899999
Q ss_pred cCCCc--cCccchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 324 PQDPT--MFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 324 ~Q~~~--lf~~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
+|++. +++.|+++|+.+.. ... ++++.++++..++.+++++. ...||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRS-----------PFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCC-----------cccCCHHHHHHHHHHHHH
Confidence 99984 56789999997631 112 34567788888876655443 356899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCE
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGL 454 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 454 (489)
+++|+++||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998765 47899999999999987 99999999985
No 174
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.7e-46 Score=354.48 Aligned_cols=201 Identities=25% Similarity=0.353 Sum_probs=175.0
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh---HHhhcc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HDLRSR 319 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r~~ 319 (489)
++++|++++|++. +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999643 359999999999999999999999999999999999999999999999999977654 346788
Q ss_pred ceEEcCCCccCcc-chhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 320 LSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 320 i~~v~Q~~~lf~~-ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
++|++|++.+|+. |++||+.+.. ..+ ++++.++++.+++.+..++.| .+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHHH
Confidence 9999999999985 9999997531 111 345778888888877655444 36799999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEE
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 455 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 455 (489)
||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998764 57899999999999986 999999999974
No 175
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-45 Score=361.35 Aligned_cols=219 Identities=24% Similarity=0.454 Sum_probs=189.0
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IGLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~~~ 314 (489)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 58999999999643 58999999999999999999999999999999999986 479999999998853 3456
Q ss_pred HhhccceEEcCCCccCccchhhhcCCCCC---C---cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE---Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~---~---~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl 388 (489)
.+++.++|++|++.+|+.|+++|+.+... . .++++.++++.+++.+++.. .......+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHHH
Confidence 67889999999999998899999976421 1 23456667888888665532 23455678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe---------CCEEEEe
Q 011281 389 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS---------YGLIEEF 458 (489)
Q Consensus 389 ~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~---------~G~i~~~ 458 (489)
+|||||+++|++|||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+.. ||||++|+ +|+|++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999887667899999999998876 99999998 8999999
Q ss_pred cChhHHhhcCC
Q 011281 459 DSPTRLLENKS 469 (489)
Q Consensus 459 g~~~el~~~~~ 469 (489)
|+++|+.+.+.
T Consensus 241 ~~~~~~~~~~~ 251 (264)
T PRK14243 241 DRTEKIFNSPQ 251 (264)
T ss_pred CCHHHHHhCCC
Confidence 99999987543
No 176
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4e-46 Score=355.00 Aligned_cols=200 Identities=24% Similarity=0.347 Sum_probs=175.3
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH---Hhhcc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLRSR 319 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r~~ 319 (489)
++++|++++|+++ ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 6899999999533 3599999999999999999999999999999999999999999999999999876543 46788
Q ss_pred ceEEcCCCccCc-cchhhhcCCCC-------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 320 LSIIPQDPTMFE-GSVHNNLDPLE-------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 320 i~~v~Q~~~lf~-~ti~~Ni~~~~-------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
++|++|++.+|. .|++||+.+.. ...++++.++++..++.++..+.| ..||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999986 59999997531 112456788899999877665544 36899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCE
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGL 454 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 454 (489)
|||+++|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999998764 47899999999999986 99999999985
No 177
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=379.38 Aligned_cols=204 Identities=27% Similarity=0.411 Sum_probs=179.3
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh----hccceEEcCCCccCcc-
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL----RSRLSIIPQDPTMFEG- 332 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~- 332 (489)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...+ ++.++||+|++.+|+.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988776543 4579999999999974
Q ss_pred chhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeC
Q 011281 333 SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE 405 (489)
Q Consensus 333 ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDE 405 (489)
|++||+.+.. ... ++++.++++.+++.++.++.|. +||||||||++|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~-----------~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD-----------ELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc-----------cCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999997631 112 3567788999999887766553 579999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChH
Q 011281 406 ATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 472 (489)
Q Consensus 406 pts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~~~ 472 (489)
||++||+.+.+.+++.|.++. .++|+|+|||+++.+.. ||+|++|++|+|++.|+++++...+...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999998763 47899999999999875 99999999999999999999987654444
No 178
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.3e-46 Score=370.56 Aligned_cols=212 Identities=25% Similarity=0.361 Sum_probs=182.8
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 4899999999974 3599999999999999999999999999999999999999999999999998654 345788999
Q ss_pred EEcCCCccCc-cchhhhcCCC---CCCcH----HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFE-GSVHNNLDPL---EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~-~ti~~Ni~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
|+||++.+|+ .|++||+.+. ...+. +++.++++.+++.+..+ +.+ ..||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~-------~~~----~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD-------VRV----ALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-------Cch----hhCCHHHHHHHHHHHH
Confidence 9999999886 5999999642 11222 34556777777755433 333 4589999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|+++|+++||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||+|++|++|+++..|+++++.+.
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998764 47899999999999976 999999999999999999998754
No 179
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=358.64 Aligned_cols=218 Identities=24% Similarity=0.392 Sum_probs=187.8
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--ChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSI--GLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~~ 314 (489)
.++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4899999999974 3589999999999999999999999999999999999875 799999999998643 334
Q ss_pred HhhccceEEcCCCccCccchhhhcCCCC---CC-c----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
.+++.++|++|++.+|+.|++||+.+.. .. . .+++.++++.+++.+.+.. ........|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHHH
Confidence 5688899999999999999999997642 11 1 2356678888887554332 233456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. |||+++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999887667899999999999876 9999999999999999999998
Q ss_pred hcC
Q 011281 466 ENK 468 (489)
Q Consensus 466 ~~~ 468 (489)
..+
T Consensus 235 ~~~ 237 (251)
T PRK14270 235 LEP 237 (251)
T ss_pred cCC
Confidence 653
No 180
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-45 Score=358.68 Aligned_cols=218 Identities=26% Similarity=0.417 Sum_probs=188.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCC-CCChHH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDIS-SIGLHD 315 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~-~~~~~~ 315 (489)
.++++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4789999999974 3599999999999999999999999999999999999986 5999999999985 345567
Q ss_pred hhccceEEcCCCccCccchhhhcCCCC---CC-c----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 316 LRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 316 ~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
+|+.++|++|++.+|+.|++||+.+.. .. . ++++.++++.+++.+.+. ..+......||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHHH
Confidence 788999999999999999999997631 11 1 234566777777765442 23345567899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
++||||++.+|+++||||||++||+.+.+.+.+.|.+..+++|+|+|||+++.+.. |||+++|++|+|++.|+.+++..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999987667899999999999887 99999999999999999999876
Q ss_pred cC
Q 011281 467 NK 468 (489)
Q Consensus 467 ~~ 468 (489)
.+
T Consensus 234 ~~ 235 (249)
T PRK14253 234 NP 235 (249)
T ss_pred CC
Confidence 53
No 181
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-46 Score=366.92 Aligned_cols=215 Identities=25% Similarity=0.375 Sum_probs=183.0
Q ss_pred EEEEEEEEEECCCC---CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----ChHH
Q 011281 243 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLHD 315 (489)
Q Consensus 243 i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 315 (489)
|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997532 3599999999999999999999999999999999999999999999999998754 3456
Q ss_pred hhccceEEcCCC--ccCccchhhhcCCCC---CCcH----HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 316 LRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 316 ~r~~i~~v~Q~~--~lf~~ti~~Ni~~~~---~~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
+|+.|+|++|++ .+|+.|++||+.+.. ..+. +++.++++.+++.+.. .......|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL----------FEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHHH
Confidence 788899999998 578889999997631 1222 2345667777775321 12334578999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
|++|||||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998764 47899999999999875 999999999999999999988
Q ss_pred hhc
Q 011281 465 LEN 467 (489)
Q Consensus 465 ~~~ 467 (489)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 653
No 182
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=9.6e-46 Score=369.99 Aligned_cols=211 Identities=23% Similarity=0.331 Sum_probs=186.9
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999964 359999999999999999999999999999999999999999999999999876 34567889999
Q ss_pred EcCCCccCcc-chhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
+||++.+|+. |++||+.+.. ... .+++.++++.+++.++.++. ...||||||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKK-----------IGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCc-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999976 9999997421 112 35677888888887665433 356899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
+++|+++||||||++||+.+.+.+++.+.++.+++|+|++||+++.+.. ||||++|++|+++..|+++++.+.
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999987778999999999999887 999999999999999999998753
No 183
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=8.1e-46 Score=374.95 Aligned_cols=212 Identities=25% Similarity=0.410 Sum_probs=184.3
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+++.|+
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 59999999999743 5999999999999999999999999999999999999999999999999987654 46788999
Q ss_pred EEcCCCccCc-cchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~-~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
|+||++.+|. .|++||+.+.. ..+ .+++.++++.+++.+. .++.+ .+||||||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-------~~~~~----~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADARV----SDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-------hCCCh----hhCCHHHHHHHHHHHH
Confidence 9999999875 59999997521 122 2345567777776554 33333 3589999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|+++|+++||||||++||+.+.+.+++.|.++. .++|+|++||+++.+.. ||||++|++|+|+..|+.+++.+.
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998864 47999999999999976 999999999999999999999754
No 184
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=365.99 Aligned_cols=215 Identities=23% Similarity=0.375 Sum_probs=188.7
Q ss_pred cEEEEEEEEEECCC----CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC-hHHh
Q 011281 242 EVDIHGLQVRYAPH----LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDL 316 (489)
Q Consensus 242 ~i~~~~v~~~y~~~----~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~ 316 (489)
.++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999742 235999999999999999999999999999999999999999999999999987543 3557
Q ss_pred hccceEEcCCCc--cCccchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 317 RSRLSIIPQDPT--MFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 317 r~~i~~v~Q~~~--lf~~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
++.++|++|+|. +|..|+.+|+.++. ..+ ++++.++++.+++.++..+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 889999999984 66678999997642 112 356788899999988776655 4579999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~ 465 (489)
++|||||+++|+++||||||++||+.+.+.+.+.|.++. .+.|+|+|||+++.+..||++++|++|+|++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998764 378999999999999889999999999999999999987
Q ss_pred hc
Q 011281 466 EN 467 (489)
Q Consensus 466 ~~ 467 (489)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
No 185
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=362.57 Aligned_cols=213 Identities=23% Similarity=0.330 Sum_probs=187.8
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999974 3599999999999999999999999999999999999999999999999999888777788899
Q ss_pred eEEcCCCccCc-cchhhhcCCCC--C---------CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH
Q 011281 321 SIIPQDPTMFE-GSVHNNLDPLE--E---------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388 (489)
Q Consensus 321 ~~v~Q~~~lf~-~ti~~Ni~~~~--~---------~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl 388 (489)
+|++|++.+|. .|+++|+.++. . ..++++.++++.+++.++..+ ....||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 99999999876 59999996531 1 113457788888888765443 3457899999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 389 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 389 ~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
+||||++++|+++||||||++||+.+.+.+.+.|.++.+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999987643 7899999999998876 9999999999999999999987
Q ss_pred h
Q 011281 466 E 466 (489)
Q Consensus 466 ~ 466 (489)
.
T Consensus 233 ~ 233 (265)
T PRK10253 233 T 233 (265)
T ss_pred h
Confidence 5
No 186
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-45 Score=359.43 Aligned_cols=212 Identities=25% Similarity=0.368 Sum_probs=186.0
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|++++|++ +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 789999999975 359999999999999999999999999999999999999999999999999988777777888999
Q ss_pred EcCCCcc-CccchhhhcCCCCC---C----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTM-FEGSVHNNLDPLEE---Y----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~l-f~~ti~~Ni~~~~~---~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++|++.+ +..|++||+.+... . .++++.++++.+++.++.++. ...||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----------YPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHHH
Confidence 9999987 55799999976421 1 234567788888886654433 356899999999999999
Q ss_pred c------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 395 L------KKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 395 l------~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
+ .+|+++||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999998764 47899999999999875 9999999999999999999987
Q ss_pred hc
Q 011281 466 EN 467 (489)
Q Consensus 466 ~~ 467 (489)
+.
T Consensus 230 ~~ 231 (258)
T PRK13548 230 TP 231 (258)
T ss_pred Ch
Confidence 53
No 187
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-45 Score=360.46 Aligned_cols=221 Identities=28% Similarity=0.432 Sum_probs=189.2
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CCh
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IGL 313 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 313 (489)
..++++|++++|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 36899999999964 3589999999999999999999999999999999999985 48999999998854 344
Q ss_pred HHhhccceEEcCCCccCccchhhhcCCCC----CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 314 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 314 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
..+++.++|++|++.+|+.|++||+.++. ... ++.+.++++.+++.+++.. ........||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 56788999999999999999999997531 111 2446778888888665432 23445678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe-----CCEEEEec
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS-----YGLIEEFD 459 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~-----~G~i~~~g 459 (489)
||++|||||+++|+++||||||++||+.+...+.+.|.+..+++|+|++||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999887667899999999999876 99999998 59999999
Q ss_pred ChhHHhhcCCC
Q 011281 460 SPTRLLENKSS 470 (489)
Q Consensus 460 ~~~el~~~~~~ 470 (489)
+++++.+.+..
T Consensus 237 ~~~~~~~~~~~ 247 (259)
T PRK14260 237 VTTQIFSNPLD 247 (259)
T ss_pred CHHHHhcCCCC
Confidence 99999865433
No 188
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=364.83 Aligned_cols=225 Identities=25% Similarity=0.409 Sum_probs=189.1
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCCC--C
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSI--G 312 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~ 312 (489)
...|+++||+++|++. .+++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +
T Consensus 37 ~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 3468999999999643 48999999999999999999999999999999999864 4999999999998643 2
Q ss_pred hHHhhccceEEcCCCccCccchhhhcCCCC---CC-c----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchH
Q 011281 313 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 384 (489)
Q Consensus 313 ~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq 384 (489)
...+|+.++|++|++.+|+.|++||+.+.. .. + ++++.++++.+++.+.+.. ........|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD-------RLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh-------HhhCChhhCCHHH
Confidence 335788999999999999889999997632 11 1 2345677777777543321 2234566799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 011281 385 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 385 ~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~e 463 (489)
|||++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||+++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999887667899999999999876 99999999999999999999
Q ss_pred HhhcCCChHH
Q 011281 464 LLENKSSSFA 473 (489)
Q Consensus 464 l~~~~~~~~~ 473 (489)
+.+.+...+.
T Consensus 268 ~~~~~~~~~~ 277 (286)
T PRK14275 268 LFTNPKDRMT 277 (286)
T ss_pred HHhCCCcHHH
Confidence 9875443343
No 189
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.7e-45 Score=354.19 Aligned_cols=206 Identities=23% Similarity=0.297 Sum_probs=179.1
Q ss_pred cEEEEEEEEEECCCC--CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---h
Q 011281 242 EVDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---L 316 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 316 (489)
.|+++|++++|++.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 589999999997532 24899999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hccceEEcCCCccCcc-chhhhcCCC---CCC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 317 -RSRLSIIPQDPTMFEG-SVHNNLDPL---EEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 317 -r~~i~~v~Q~~~lf~~-ti~~Ni~~~---~~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
++.++|++|++.+|+. |++||+.+. ... ..+++.++++.+++.++.++.| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3579999999999875 999999652 111 2356788899999877766554 3579999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVIDSDMVLLLSYGLIEEF 458 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 458 (489)
++|||||+.+|+++||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998764 2 7899999999999888999999999999864
No 190
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=365.86 Aligned_cols=214 Identities=27% Similarity=0.430 Sum_probs=182.9
Q ss_pred EEEEEEEEEECCCC---CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----ChHH
Q 011281 243 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLHD 315 (489)
Q Consensus 243 i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 315 (489)
|+++|++++|++.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 3599999999999999999999999999999999999999999999999998643 2456
Q ss_pred hhccceEEcCCC--ccCccchhhhcCCCC---CCc----HHHHHHHHHHcCCc-HHHHhccccccchhhcCCCCCCchHH
Q 011281 316 LRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 316 ~r~~i~~v~Q~~--~lf~~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~-~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
.++.++|++|+| .+|..|++||+.++. ... .+++.++++.+++. ++.. .....||||||
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~~LSgGq~ 151 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS-----------KSPFELSGGQM 151 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhh-----------CCcccCCHHHH
Confidence 678899999998 577789999997531 122 23467778888775 3332 23456899999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~e 463 (489)
||++|||||+.+|++|||||||++||+.+.+.+.+.|.++. .+.|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998764 47899999999999875 99999999999999999998
Q ss_pred Hhhc
Q 011281 464 LLEN 467 (489)
Q Consensus 464 l~~~ 467 (489)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 8653
No 191
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-45 Score=358.81 Aligned_cols=204 Identities=25% Similarity=0.347 Sum_probs=179.7
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 35999999999975 35999999999999999999999999999999999999999999999998763 467789
Q ss_pred eEEcCCCccCc-cchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 321 SIIPQDPTMFE-GSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 321 ~~v~Q~~~lf~-~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
+|++|++.+|+ .|++||+.+.. ...++++.++++.+++.++..+. ..+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEW-----------PAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 59999998642 22356778889998887654433 3568999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 462 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 462 (489)
+++||||||++||+.+...+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998753 37899999999999865 9999999999999998865
No 192
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-45 Score=366.45 Aligned_cols=213 Identities=27% Similarity=0.444 Sum_probs=188.8
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.++++||+.+|+++ ..+|+||||++++|+++|++||||||||||+|+|+|+..|++|+|.++|.+...- ..++++++|
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 47889999999732 3599999999999999999999999999999999999999999999999998765 667899999
Q ss_pred EEcCCCccCcc-chhhhcCCCC---C----CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLE---E----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~---~----~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
|+||+|.+++. |++||+.+.. . ..++++.++++..+|.+...+. ...||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKK-----------VRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcc-----------hhhcCHHHHHHHHHHHH
Confidence 99999998876 9999997631 1 2356899999999998743222 34579999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-ceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS-D-CTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~-~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|+++|++|||||||++|||.+...+.+.|+++.+ + +||+++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998764 4 799999999999998 999999999999999999998654
No 193
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.3e-45 Score=355.37 Aligned_cols=211 Identities=24% Similarity=0.378 Sum_probs=178.9
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH-hhccce
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRLS 321 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~ 321 (489)
|+++||+++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 4789999999743 5999999999999999999999999999999999999999999999999998776554 467899
Q ss_pred EEcCCCccCcc-chhhhcCCCC-C--Cc-HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLE-E--YA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~-~--~~-~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
|++|++.+|+. |+++|+.++. . .. .+...++++..+ +++.........||||||||++||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999986 9999997531 1 11 222344444433 12223344556799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
+|+++||||||++||+.+.+.+.+.|.+..+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++.
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999999999999987653 7899999999999986 9999999999999999999873
No 194
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-45 Score=362.65 Aligned_cols=219 Identities=25% Similarity=0.435 Sum_probs=188.4
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CC
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISS--IG 312 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 312 (489)
.+.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 37 ~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 37 ETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 346999999999965 359999999999999999999999999999999999997 689999999999854 34
Q ss_pred hHHhhccceEEcCCCccCccchhhhcCCCC---C---CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 313 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---E---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 313 ~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~---~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
...+++.++|++|++.+|+.|++||+.+.. . ..++++.++++.+++.+.+.. .+......|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 556788999999999999889999997531 1 124567888888887654432 234456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEE-EEeCCEEEEecChhHH
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVL-LLSYGLIEEFDSPTRL 464 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~-~l~~G~i~~~g~~~el 464 (489)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999987666899999999999876 99975 5799999999999998
Q ss_pred hhc
Q 011281 465 LEN 467 (489)
Q Consensus 465 ~~~ 467 (489)
.++
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 765
No 195
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-45 Score=355.93 Aligned_cols=213 Identities=23% Similarity=0.329 Sum_probs=179.7
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH-hhccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 320 (489)
.++++|++++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999998776544 57789
Q ss_pred eEEcCCCccCcc-chhhhcCCCCC-CcH----HHHHHHHHHc-CCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLEE-YAD----EEIWEALDKC-QLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~~-~~~----~~~~~~~~~~-~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
+|++|++.+|+. |+++|+.+... ... +++.++++.. ++.+ ........||||||||++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~a 151 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGRA 151 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHHH
Confidence 999999999985 99999976321 111 2233333333 1211 2223456799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. |||+++|++|++++.|+++++...
T Consensus 152 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 152 LMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999998764 47899999999997765 999999999999999999999753
No 196
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-45 Score=355.78 Aligned_cols=213 Identities=26% Similarity=0.397 Sum_probs=182.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH-hhccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 320 (489)
.++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3789999999964 35999999999999999999999999999999999999999999999999998776544 56789
Q ss_pred eEEcCCCccCcc-chhhhcCCCCC----Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLEE----YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~~----~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
+|++|++.+|+. |++||+.+... .+ ++++.+.++..++.+. .......||||||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHHH
Confidence 999999999875 99999976321 12 2235555666555433 3344567999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
||++++|++|||||||++||+.+.+.+.+.+.... .++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999999988754 47899999999987765 999999999999999999998753
No 197
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.4e-45 Score=339.66 Aligned_cols=172 Identities=33% Similarity=0.571 Sum_probs=161.3
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|++++|++...++++++||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 46899999997543459999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEE
Q 011281 323 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 402 (489)
Q Consensus 323 v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ill 402 (489)
++|++.+|+.|++||+ ||||||||++||||++++|+++|
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998 89999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCEE
Q 011281 403 LDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLI 455 (489)
Q Consensus 403 lDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i 455 (489)
|||||++||+.+...+.+.+.++. +++|+|++||+++.+..||++++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999998764 47899999999999988999999999975
No 198
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-45 Score=358.57 Aligned_cols=223 Identities=22% Similarity=0.356 Sum_probs=192.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--ChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSI--GLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~--~~~ 314 (489)
.+.+++++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999964 3599999999999999999999999999999999999987 799999999998643 334
Q ss_pred HhhccceEEcCCCccCccchhhhcCCCCC------CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPLEE------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~------~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl 388 (489)
.+++.++|++|++.+|..|+.||+.++.. ...+++.++++.+++.+.+.. ..++...+|||||+||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHH
Confidence 56788999999999998999999976421 123567889999998766543 23456678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe--------CCEEEEec
Q 011281 389 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS--------YGLIEEFD 459 (489)
Q Consensus 389 ~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~--------~G~i~~~g 459 (489)
+||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999987667899999999998876 99999996 89999999
Q ss_pred ChhHHhhcCCChHH
Q 011281 460 SPTRLLENKSSSFA 473 (489)
Q Consensus 460 ~~~el~~~~~~~~~ 473 (489)
+++++.+.+...+.
T Consensus 239 ~~~~~~~~~~~~~~ 252 (261)
T PRK14263 239 PTAQIFQNPREQLT 252 (261)
T ss_pred CHHHHHhCCCcHHH
Confidence 99999875433343
No 199
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-45 Score=360.48 Aligned_cols=219 Identities=27% Similarity=0.375 Sum_probs=188.3
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCCC-hH
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIG-LH 314 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~-~~ 314 (489)
..++++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 20 ~~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 20 PAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred cEEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 35899999999974 3589999999999999999999999999999999999986 7999999999987653 34
Q ss_pred HhhccceEEcCCCccCccchhhhcCCCC----CCcHHH----HHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPLE----EYADEE----IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~----~~~~~~----~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
.+++.++|++|++.+|+.|+++|+.++. ..+.++ +.++++.+++.++. .+.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHH
Confidence 6788999999999999999999997631 123333 34556777765433 23445567789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++|||||+.+|+++||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+.. |||+++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887666899999999999876 9999999999999999999998
Q ss_pred hcC
Q 011281 466 ENK 468 (489)
Q Consensus 466 ~~~ 468 (489)
+.+
T Consensus 251 ~~~ 253 (276)
T PRK14271 251 SSP 253 (276)
T ss_pred hCc
Confidence 754
No 200
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-45 Score=357.09 Aligned_cols=222 Identities=23% Similarity=0.398 Sum_probs=191.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCCC--ChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSI--GLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~~~ 314 (489)
.++++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999974 359999999999999999999999999999999999864 4899999999998653 355
Q ss_pred HhhccceEEcCCCccCccchhhhcCCCC---C-Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~-~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
.+++.++|+||++.+|+.|+++|+.+.. . .+ .+++.++++.+++.+++.. .+......|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHHH
Confidence 6788999999999999999999997531 1 11 2456778889998776543 234556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++||||++++|+++||||||++||+.+.+.+.+.|.+..++.|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987678899999999998887 8999999999999999999997
Q ss_pred hcCCChH
Q 011281 466 ENKSSSF 472 (489)
Q Consensus 466 ~~~~~~~ 472 (489)
..+...+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14266 234 INPKDKR 240 (250)
T ss_pred hCCCChH
Confidence 6544444
No 201
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-45 Score=349.02 Aligned_cols=200 Identities=28% Similarity=0.388 Sum_probs=175.2
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 4689999999642 2 39999999999999999999999999999999999999999999999876653 3578999
Q ss_pred EcCCCccCcc-chhhhcCCCCC-------CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFEG-SVHNNLDPLEE-------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~~~-------~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++|++.+|++ |++||+.+... ..++++.++++.+++.++..+.|. .||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG-----------ELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcc-----------cCCHHHHHHHHHHHHH
Confidence 9999999975 99999975321 124568889999998877666553 5799999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
+++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999998764 37899999999999976 9999999999998764
No 202
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-45 Score=365.62 Aligned_cols=216 Identities=24% Similarity=0.343 Sum_probs=181.6
Q ss_pred ccEEEEEEEEEECCCC---CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC----C-C
Q 011281 241 GEVDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----I-G 312 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~-~ 312 (489)
+.|+++|++++|++.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4699999999997542 248999999999999999999999999999999999999999999999998852 1 3
Q ss_pred hHHhhccceEEcCCC--ccCccchhhhcCCCC---CCcH----HHHHHHHHHcCCc-HHHHhccccccchhhcCCCCCCc
Q 011281 313 LHDLRSRLSIIPQDP--TMFEGSVHNNLDPLE---EYAD----EEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWSM 382 (489)
Q Consensus 313 ~~~~r~~i~~v~Q~~--~lf~~ti~~Ni~~~~---~~~~----~~~~~~~~~~~l~-~~i~~l~~gldt~vge~G~~LSg 382 (489)
...+|+.|+|++|++ .+|+.|++||+.+.. .... +++.++++.+++. ++. ......|||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~-----------~~~~~~LS~ 153 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYV-----------KRSPFELSG 153 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------cCChhhCCH
Confidence 456788999999998 467789999997632 1222 2345566666653 222 234567999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 383 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 383 Gq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999998764 37899999999998865 9999999999999999
Q ss_pred ChhHHhhc
Q 011281 460 SPTRLLEN 467 (489)
Q Consensus 460 ~~~el~~~ 467 (489)
+++++.+.
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 99888653
No 203
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3.2e-45 Score=369.62 Aligned_cols=227 Identities=25% Similarity=0.366 Sum_probs=189.8
Q ss_pred cEEEEEEEEEECCC--CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCChHHh
Q 011281 242 EVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIGLHDL 316 (489)
Q Consensus 242 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~ 316 (489)
-++++|+++.|+.. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999632 235899999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----ccceEEcCCC--ccCc-cchhhhcCC----CCCCcH----HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCC
Q 011281 317 R----SRLSIIPQDP--TMFE-GSVHNNLDP----LEEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 381 (489)
Q Consensus 317 r----~~i~~v~Q~~--~lf~-~ti~~Ni~~----~~~~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LS 381 (489)
+ +.|+||+|+| .+++ .|+.+|+.. ....+. +++.++++.+++.+ +. ..++.....||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~-------~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE-------AR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-------hH-HHhcCCcccCC
Confidence 3 4799999998 4555 478777632 222222 34566777776642 22 22455677899
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEe
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEF 458 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 458 (489)
||||||++|||||+.+|+++|+||||++||+.++..+.+.|.++.+ +.|+|+|||+++.+.. ||||+||++|+|++.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999987643 7899999999999975 999999999999999
Q ss_pred cChhHHhhcCCChHHHHH
Q 011281 459 DSPTRLLENKSSSFAQLV 476 (489)
Q Consensus 459 g~~~el~~~~~~~~~~l~ 476 (489)
|+.+++.+++..+|...+
T Consensus 244 g~~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGL 261 (330)
T ss_pred CCHHHHHhCCCCHHHHHH
Confidence 999999987767776644
No 204
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-45 Score=362.75 Aligned_cols=212 Identities=27% Similarity=0.380 Sum_probs=182.3
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC--CCChHHhhccc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--SIGLHDLRSRL 320 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~i 320 (489)
|+++||+++|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+.+
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 689999999974 35999999999999999999999999999999999999999999999999985 23345678889
Q ss_pred eEEcCCCc--cCccchhhhcCCC---CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 321 SIIPQDPT--MFEGSVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 321 ~~v~Q~~~--lf~~ti~~Ni~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
+|++|++. +|..|+.+|+.+. .... .+++.++++.+++.++.++ ....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la 148 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-----------PIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-----------CchhCCHHHHHHHHHH
Confidence 99999986 5667899998753 1122 2345678888888665432 2456899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|||+.+|+++||||||++||+.+...+.+.|.+.. +++|+|+|||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998764 47899999999999865 999999999999999999998754
No 205
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.7e-45 Score=375.85 Aligned_cols=207 Identities=20% Similarity=0.283 Sum_probs=178.6
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE----eCCCCChHHh---h-ccceEEcCCCcc
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI----DISSIGLHDL---R-SRLSIIPQDPTM 329 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~----~~~~~~~~~~---r-~~i~~v~Q~~~l 329 (489)
.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++...+.+.+ | +.|+||+|++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 4899999999999999999999999999999999999999999999996 5666655443 3 579999999999
Q ss_pred Cc-cchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEE
Q 011281 330 FE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 401 (489)
Q Consensus 330 f~-~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~il 401 (489)
|+ .|++||+.++. ..+ .+++.++++.+++.++.+..| .+||||||||++|||||+.+|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 97 69999997641 112 346788899999987765544 358999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 011281 402 VLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475 (489)
Q Consensus 402 llDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l 475 (489)
|||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+.. ||||++|++|++++.|+++|++.++...|.+.
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~ 263 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVAD 263 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHH
Confidence 99999999999999999999987643 7899999999999765 99999999999999999999987654445433
No 206
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-45 Score=370.07 Aligned_cols=227 Identities=21% Similarity=0.320 Sum_probs=188.7
Q ss_pred cEEEEEEEEEECC--CCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC----CCCceEEECCEeCCCCChHH
Q 011281 242 EVDIHGLQVRYAP--HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE----PTAGLIAIDGIDISSIGLHD 315 (489)
Q Consensus 242 ~i~~~~v~~~y~~--~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 315 (489)
-|+++||+++|+. ....+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3789999999953 22358999999999999999999999999999999999986 58999999999998887665
Q ss_pred hh----ccceEEcCCCc--cCc-cchhhhcCCC-------C----C--CcHHHHHHHHHHcCCcHHHHhccccccchhhc
Q 011281 316 LR----SRLSIIPQDPT--MFE-GSVHNNLDPL-------E----E--YADEEIWEALDKCQLGNEVRKNEGKLESRVTE 375 (489)
Q Consensus 316 ~r----~~i~~v~Q~~~--lf~-~ti~~Ni~~~-------~----~--~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge 375 (489)
++ +.|+||+|+|. +++ .|+.+|+... . . ...+++.++++.+++.+... ....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhC
Confidence 43 47999999997 333 4888887421 0 0 11346788899999975321 1122
Q ss_pred CCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeC
Q 011281 376 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSY 452 (489)
Q Consensus 376 ~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~ 452 (489)
....||||||||++|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 2356899999999999999999999999999999999999999999988653 7899999999999976 999999999
Q ss_pred CEEEEecChhHHhhcCCChHHHHH
Q 011281 453 GLIEEFDSPTRLLENKSSSFAQLV 476 (489)
Q Consensus 453 G~i~~~g~~~el~~~~~~~~~~l~ 476 (489)
|+|++.|+.+++.+++..+|.+.+
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~l 258 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQAL 258 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHHH
Confidence 999999999999887666776543
No 207
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=9.7e-46 Score=352.18 Aligned_cols=196 Identities=30% Similarity=0.395 Sum_probs=169.2
Q ss_pred EEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEc
Q 011281 245 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 324 (489)
Q Consensus 245 ~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 324 (489)
++||+++|++ ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.++|++
T Consensus 2 ~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~ 74 (213)
T cd03235 2 VEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVP 74 (213)
T ss_pred cccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEec
Confidence 6899999964 35899999999999999999999999999999999999999999999998764 4677899999
Q ss_pred CCCcc---CccchhhhcCCCCC-----------CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 325 QDPTM---FEGSVHNNLDPLEE-----------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 325 Q~~~l---f~~ti~~Ni~~~~~-----------~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
|++.+ |+.|++||+.+... ..++++.++++.+++.++..+. ..+||||||||++|
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~l 143 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRVLL 143 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHH
Confidence 99976 55799999975321 1234678888888887665443 34689999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
||||+.+|+++||||||++||+.+.+.+.+.|.+.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999998764 57899999999999876 9999999886 55544
No 208
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-45 Score=358.57 Aligned_cols=220 Identities=23% Similarity=0.377 Sum_probs=189.6
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC----
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS---- 310 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~---- 310 (489)
.+.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 4569999999999753 599999999999999999999999999999999999875 79999999987742
Q ss_pred CChHHhhccceEEcCCCccCccchhhhcCCCC---C-----CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCc
Q 011281 311 IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE---E-----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 382 (489)
Q Consensus 311 ~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~-----~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSg 382 (489)
.+...+++.++|++|++.+|+.|++||+.+.. . ..++++.++++.+++.+.+. ..++.....|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCCH
Confidence 23456788899999999999999999997631 1 12356777888887754332 344556778999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecCh
Q 011281 383 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 461 (489)
Q Consensus 383 Gq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 461 (489)
||+||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||||++|++|++++.|++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999887667899999999999975 999999999999999999
Q ss_pred hHHhhcC
Q 011281 462 TRLLENK 468 (489)
Q Consensus 462 ~el~~~~ 468 (489)
+++...+
T Consensus 245 ~~~~~~~ 251 (265)
T PRK14252 245 DTIFIKP 251 (265)
T ss_pred HHHHhCC
Confidence 9998653
No 209
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-45 Score=356.69 Aligned_cols=222 Identities=23% Similarity=0.378 Sum_probs=184.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCEeCCC--CChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGLIAIDGIDISS--IGLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~--~~~~ 314 (489)
.++++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4789999999974 35999999999999999999999999999999999999874 8999999999865 3345
Q ss_pred HhhccceEEcCCCccCcc-chhhhcCCCC---CC-cHH----HHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 315 DLRSRLSIIPQDPTMFEG-SVHNNLDPLE---EY-ADE----EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~---~~-~~~----~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
.+|+.++|++|++.+|+. |+.||+.+.. .. .++ ...+.++.+++.+.+ ++.++ ....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~----~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLK----TPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhc----CCcccCCHHHH
Confidence 678889999999999885 9999997521 11 222 233445555554432 22233 33567999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||||++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999887667999999999999886 999999999999999999999
Q ss_pred hhcCCChH
Q 011281 465 LENKSSSF 472 (489)
Q Consensus 465 ~~~~~~~~ 472 (489)
...+...+
T Consensus 235 ~~~~~~~~ 242 (252)
T PRK14272 235 FTNPRDER 242 (252)
T ss_pred HhCcCcHH
Confidence 87654444
No 210
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-45 Score=357.78 Aligned_cols=213 Identities=21% Similarity=0.342 Sum_probs=181.7
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh-hccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 320 (489)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 4899999999964 359999999999999999999999999999999999999999999999999987765554 4569
Q ss_pred eEEcCCCccCcc-chhhhcCCCCC-------------------Cc---HHHHHHHHHHcCCcHHHHhccccccchhhcCC
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLEE-------------------YA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENG 377 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~~-------------------~~---~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G 377 (489)
+|++|++.+|+. |++||+.++.. .. .+++.++++..++.+ ......
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~ 151 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-----------HANRQA 151 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-----------hhhCCh
Confidence 999999999986 99999976310 00 123444555555443 344555
Q ss_pred CCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCE
Q 011281 378 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGL 454 (489)
Q Consensus 378 ~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~ 454 (489)
.+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 152 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 231 (255)
T PRK11300 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231 (255)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 67999999999999999999999999999999999999999999987643 7899999999999876 99999999999
Q ss_pred EEEecChhHHhhc
Q 011281 455 IEEFDSPTRLLEN 467 (489)
Q Consensus 455 i~~~g~~~el~~~ 467 (489)
+++.|+++++...
T Consensus 232 i~~~~~~~~~~~~ 244 (255)
T PRK11300 232 PLANGTPEEIRNN 244 (255)
T ss_pred EEecCCHHHHhhC
Confidence 9999999998753
No 211
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-45 Score=357.46 Aligned_cols=217 Identities=25% Similarity=0.427 Sum_probs=185.3
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--IGLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~~~~ 314 (489)
.++++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 48999999999753 599999999999999999999999999999999999974 69999999999853 3455
Q ss_pred HhhccceEEcCCCccCc-cchhhhcCCCC---C-Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 315 DLRSRLSIIPQDPTMFE-GSVHNNLDPLE---E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~---~-~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
.+|+.++|++|++.+|+ .|+++|+.+.. . .+ ++++.++++.+++.+++. ........+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 67889999999999987 49999996421 1 11 235667788887754432 233445677999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe------CCEEEEe
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS------YGLIEEF 458 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~------~G~i~~~ 458 (489)
||++||||++.+|+++||||||++||+.+...+.+.|.+..+++|+|+|||+++.+.. ||||++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999887667899999999999865 99999997 8999999
Q ss_pred cChhHHhhc
Q 011281 459 DSPTRLLEN 467 (489)
Q Consensus 459 g~~~el~~~ 467 (489)
|+++++...
T Consensus 235 ~~~~~~~~~ 243 (258)
T PRK14241 235 DDTEKIFSN 243 (258)
T ss_pred CCHHHHHhC
Confidence 999999765
No 212
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2e-45 Score=352.89 Aligned_cols=209 Identities=23% Similarity=0.323 Sum_probs=181.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||++.|++ ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4899999999964 35999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EEcCCCccCccchhhhcCCC----C-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 322 IIPQDPTMFEGSVHNNLDPL----E-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 322 ~v~Q~~~lf~~ti~~Ni~~~----~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
|++|++.+|+.|++||+.+. . ...++++.++++.+++.+. .......+|||||+||++|||||++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDT----------ILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChH----------HhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999988999999752 1 1123456677777777431 2234456799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEE-eCCEEEEecChh
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLL-SYGLIEEFDSPT 462 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l-~~G~i~~~g~~~ 462 (489)
+|+++||||||++||+.+.+.+.+.+.++. .++|+|++||+++.+..||++++| +++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999998764 378999999999999889999999 477778888885
No 213
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3e-45 Score=358.59 Aligned_cols=211 Identities=24% Similarity=0.347 Sum_probs=185.0
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|+++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 689999999965 359999999999999999999999999999999999999999999999999988887778888999
Q ss_pred EcCCCccC-ccchhhhcCCCC----C-------CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 323 IPQDPTMF-EGSVHNNLDPLE----E-------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 323 v~Q~~~lf-~~ti~~Ni~~~~----~-------~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
++|++.++ ..|+++|+.++. . ..++++.++++.+++.+..++ ....||||||||++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVHV 148 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHH
Confidence 99998654 579999997631 0 112356778888887655433 345689999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
|||++.+|+++||||||++||+.+.+.+.+.|++.. ++.|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 149 ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999998764 47899999999999965 99999999999999999999865
No 214
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-45 Score=358.62 Aligned_cols=222 Identities=23% Similarity=0.400 Sum_probs=189.8
Q ss_pred CCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCC--C
Q 011281 239 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISS--I 311 (489)
Q Consensus 239 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~--~ 311 (489)
....|+++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 17 ~~~~l~~~nl~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CCceEEEeeEEEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 34479999999999753 599999999999999999999999999999999999863 69999999999854 3
Q ss_pred ChHHhhccceEEcCCCccCccchhhhcCCCCC---C---cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 312 GLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE---Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 312 ~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~---~---~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
+...+|+.++|++|++.+|+.|+.+|+.++.. . .++++.++++.+++.+++.. ........||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~ 167 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQ 167 (274)
T ss_pred hhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHH
Confidence 34467889999999999998899999976421 1 23456777888887655432 23445678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe---------CCEE
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS---------YGLI 455 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~---------~G~i 455 (489)
||++|||||+++|+++||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+.. |||+++|+ +|++
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999999999999987667899999999999876 99999998 8999
Q ss_pred EEecChhHHhhcCC
Q 011281 456 EEFDSPTRLLENKS 469 (489)
Q Consensus 456 ~~~g~~~el~~~~~ 469 (489)
++.|+.+++...+.
T Consensus 248 ~~~g~~~~~~~~~~ 261 (274)
T PRK14265 248 VEFSPTEQMFGSPQ 261 (274)
T ss_pred EEeCCHHHHHhCCC
Confidence 99999999986543
No 215
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-45 Score=362.12 Aligned_cols=213 Identities=26% Similarity=0.377 Sum_probs=184.3
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC--CChHHhhccc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--IGLHDLRSRL 320 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~i 320 (489)
++++||+++|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 6899999999743 359999999999999999999999999999999999999999999999999852 2334678899
Q ss_pred eEEcCCC--ccCccchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 321 SIIPQDP--TMFEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 321 ~~v~Q~~--~lf~~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
+|++|++ .+|+.|++||+.++. ... .+++.++++.+++.++.++. ...|||||+||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~Gq~qrv~la 149 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP-----------PHHLSGGQKKRVAIA 149 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC-----------hhhCCHHHHHHHHHH
Confidence 9999997 477889999997531 112 24577888888887654433 346899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
||++.+|+++||||||++||+.+...+.+.+.++. ++.|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998764 47899999999999875 999999999999999999998753
No 216
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-45 Score=351.63 Aligned_cols=208 Identities=23% Similarity=0.336 Sum_probs=183.3
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++||+++|++. ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 6899999999742 239999999999999999999999999999999999999999999999876543 2567999
Q ss_pred EcCCCccCcc-chhhhcCCCC--C-----CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFEG-SVHNNLDPLE--E-----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~~--~-----~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++|++.+|++ |++||+.+.. . ..++++.++++.+++.+++++.|. .||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG-----------QLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc-----------cCCHHHHHHHHHHHHH
Confidence 9999999985 9999997531 1 124568889999999887776664 5799999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
+++|+++||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999998764 27899999999999876 999999999999999999999865
No 217
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3e-45 Score=351.03 Aligned_cols=203 Identities=28% Similarity=0.363 Sum_probs=175.1
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---hhcc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LRSR 319 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r~~ 319 (489)
|+++|++++|+++ ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 6899999999533 35999999999999999999999999999999999999999999999999998765433 6788
Q ss_pred ceEEcCCCccC-ccchhhhcCCC---CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 320 LSIIPQDPTMF-EGSVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 320 i~~v~Q~~~lf-~~ti~~Ni~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
++|++|++.+| ..|++||+.+. ...+ .+++.++++..++.++..+. ...||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la 149 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGIA 149 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHHH
Confidence 99999999875 56999999763 1222 23466778888877665443 356899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEE
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 457 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 457 (489)
||++++|+++||||||++||+.+.+.+.+.+.++. ++.|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999998764 47899999999999987 89999999999864
No 218
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.8e-45 Score=350.88 Aligned_cols=207 Identities=26% Similarity=0.359 Sum_probs=172.3
Q ss_pred EEEEEEEEEECCCC--CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh---HHhh
Q 011281 243 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL---HDLR 317 (489)
Q Consensus 243 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~r 317 (489)
|+++||+++|++.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996531 258999999999999999999999999999999999999999999999999987763 4678
Q ss_pred ccceEEcCCC--ccC-ccchhhhcCCC----C-CCcHHHH----HHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 318 SRLSIIPQDP--TMF-EGSVHNNLDPL----E-EYADEEI----WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 318 ~~i~~v~Q~~--~lf-~~ti~~Ni~~~----~-~~~~~~~----~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
+.++|++|++ .++ ..|+++|+.+. . ...++.. .++++..++.+ ........+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 8999999999 344 46999998642 1 1111111 24556665531 123344567999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
||++|||||+.+|+++||||||++||+.+.+.+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999987653 7899999999999885 9999999999998765
No 219
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-45 Score=353.06 Aligned_cols=210 Identities=26% Similarity=0.394 Sum_probs=185.6
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|++++|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 4689999999753 59999999999999999999999999999999999999999999999999976553 3678999
Q ss_pred EcCCCccCcc-chhhhcCCCC-------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFEG-SVHNNLDPLE-------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~~-------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++|++.+|.+ |+++|+.+.. ...++++.++++..++.+++.+.| ..||||||||++||||+
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999975 9999997531 112456778889999888776655 46799999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
+++|+++||||||++||+.+.+.+.+.+.++.+ ++|+|++||+++.+.. ||||++|++|++++.|+++++...
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999999987653 7899999999999876 999999999999999999998865
No 220
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-45 Score=356.59 Aligned_cols=221 Identities=25% Similarity=0.429 Sum_probs=189.5
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCEeCCC--CCh
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-----AGLIAIDGIDISS--IGL 313 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~-----~G~i~~~g~~~~~--~~~ 313 (489)
+.|+++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+.
T Consensus 6 ~~l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 359999999999643 5899999999999999999999999999999999999985 8999999998753 344
Q ss_pred HHhhccceEEcCCCccCccchhhhcCCCC---CC-c----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 314 HDLRSRLSIIPQDPTMFEGSVHNNLDPLE---EY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 314 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~-~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
..+|+.++|++|++.+|+.|++||+.+.. .. + ++++.++++.+++.+++.. ..+.....||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 56788899999999999999999997531 11 1 2456778888888665542 23455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeC-----CEEEE
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY-----GLIEE 457 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~-----G~i~~ 457 (489)
||++||||++++|+++||||||++||+.+.+.+.+.|.... .++|+|+|||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998753 47899999999999876 999999999 99999
Q ss_pred ecChhHHhhcCCC
Q 011281 458 FDSPTRLLENKSS 470 (489)
Q Consensus 458 ~g~~~el~~~~~~ 470 (489)
.|+++++.+.+..
T Consensus 237 ~~~~~~~~~~~~~ 249 (261)
T PRK14258 237 FGLTKKIFNSPHD 249 (261)
T ss_pred eCCHHHHHhCCCC
Confidence 9999999876443
No 221
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.3e-45 Score=349.46 Aligned_cols=200 Identities=27% Similarity=0.439 Sum_probs=172.6
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC--CChHHhhccc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--IGLHDLRSRL 320 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~i 320 (489)
++++||+++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 468999999975 358999999999999999999999999999999999999999999999999853 3445678899
Q ss_pred eEEcCCCccCc-cchhhhcCCCC----CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 321 SIIPQDPTMFE-GSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 321 ~~v~Q~~~lf~-~ti~~Ni~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
+|++|++.+|+ .|++||+.++. ..+ .+++.++++.+++.+.+.+.| .+||||||||++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la 147 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 147 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc-----------cccCHHHHHHHHHH
Confidence 99999999987 59999997631 222 234667777777766554433 56899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEE
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 455 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 455 (489)
||++++|+++||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|+|
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998764 47899999999999976 999999999975
No 222
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=7.9e-45 Score=351.54 Aligned_cols=211 Identities=24% Similarity=0.392 Sum_probs=183.8
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|++++|++. .+|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 4689999999753 59999999999999999999999999999999999999999999999999876542 4678999
Q ss_pred EcCCCccCcc-chhhhcCCCC---CC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFEG-SVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~~---~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
+||++.+|++ |++||+.+.. .. ..+++.++++..++.++.++.+ .+|||||+||++||||+
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral 145 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP-----------NQLSGGQRQRVALARAL 145 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999975 9999997632 11 1345677788888766554433 46899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 468 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~ 468 (489)
+++|+++||||||++||+.+++.+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~ 222 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCC
Confidence 999999999999999999999999999987543 7899999999999876 9999999999999999999998653
No 223
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-45 Score=348.87 Aligned_cols=200 Identities=25% Similarity=0.404 Sum_probs=172.6
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 468999999964 359999999999999999999999999999999999999999999999987753 46778999
Q ss_pred EcCCCccCcc-chhhhcCCCC---CC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFEG-SVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~~---~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++|++.+|++ |++||+.+.. .. .++++.++++..++.+...+ ...+||||||||++||||+
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK-----------RVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhC-----------cHhhCCHHHHHHHHHHHHH
Confidence 9999999875 9999986531 11 13456677777777655443 3456899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
+.+|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998764 47899999999999876 9999999999998754
No 224
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.9e-45 Score=354.96 Aligned_cols=213 Identities=24% Similarity=0.281 Sum_probs=178.3
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCEeCCCCChHHh-hcc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAIDGIDISSIGLHDL-RSR 319 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~-r~~ 319 (489)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++..++.... +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 478999999974 35899999999999999999999999999999999994 7999999999999988776554 445
Q ss_pred ceEEcCCCccCcc-chhhhcCCC----CC------Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchH
Q 011281 320 LSIIPQDPTMFEG-SVHNNLDPL----EE------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 384 (489)
Q Consensus 320 i~~v~Q~~~lf~~-ti~~Ni~~~----~~------~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq 384 (489)
++|++|++.+|++ |+++|+.+. .. .+ .+++.++++.+++.+.. .+..++ ..|||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G~ 149 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGGE 149 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHHH
Confidence 9999999999886 899998542 10 11 24566777777775321 111111 2489999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh--cCEEEEEeCCEEEEecCh
Q 011281 385 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEFDSP 461 (489)
Q Consensus 385 ~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~ 461 (489)
|||++|||||+.+|+++||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 999999999999999999999999999999999999998865 47899999999999986 799999999999999998
Q ss_pred hHHhh
Q 011281 462 TRLLE 466 (489)
Q Consensus 462 ~el~~ 466 (489)
+++..
T Consensus 230 ~~~~~ 234 (243)
T TIGR01978 230 ELAKE 234 (243)
T ss_pred HHhcc
Confidence 86553
No 225
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=8.1e-45 Score=357.53 Aligned_cols=227 Identities=25% Similarity=0.324 Sum_probs=188.7
Q ss_pred cEEEEEEEEEECCC-------CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH
Q 011281 242 EVDIHGLQVRYAPH-------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~-------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~ 314 (489)
.|+++||+++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 23599999999999999999999999999999999999999999999999998765555
Q ss_pred HhhccceEEcCCCc--cCcc-chhhhcCCC----CCC----cHHHHHHHHHHcCCc-HHHHhccccccchhhcCCCCCCc
Q 011281 315 DLRSRLSIIPQDPT--MFEG-SVHNNLDPL----EEY----ADEEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWSM 382 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~--lf~~-ti~~Ni~~~----~~~----~~~~~~~~~~~~~l~-~~i~~l~~gldt~vge~G~~LSg 382 (489)
..++.++|++|++. +++. |+.+|+.+. ... .++++.++++.+++. +.... ....|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY-----------YPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhc-----------CchhcCH
Confidence 56678999999985 4443 888887531 111 234677889999884 33322 2346899
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 383 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 383 Gq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
|||||++||||++++|+++||||||++||+.+.+.+.+.|.++. .+.|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998864 37899999999999987 9999999999999999
Q ss_pred ChhHHhhcCC-ChHHHHHHHH
Q 011281 460 SPTRLLENKS-SSFAQLVAEY 479 (489)
Q Consensus 460 ~~~el~~~~~-~~~~~l~~~~ 479 (489)
+++++...+. ..++.++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 9999987543 3355566543
No 226
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-45 Score=370.86 Aligned_cols=211 Identities=20% Similarity=0.329 Sum_probs=185.2
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----ChHHhhc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLHDLRS 318 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~r~ 318 (489)
|++ |++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .....++
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 566 899999642 23 89999999999999999999999999999999999999999999998643 2345678
Q ss_pred cceEEcCCCccCc-cchhhhcCCC-CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 319 RLSIIPQDPTMFE-GSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 319 ~i~~v~Q~~~lf~-~ti~~Ni~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
.++|++|++.+|+ .|++||+.++ .....+++.++++.+++.++.++.| .+||||||||++|||||++
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHHc
Confidence 8999999999997 5999999875 3334567888999999887766555 4679999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 469 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~ 469 (489)
+|+++||||||++||+.+.+.+++.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 9999999999999999999999999987643 6899999999998876 99999999999999999999998754
No 227
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=353.46 Aligned_cols=219 Identities=27% Similarity=0.409 Sum_probs=186.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CCceEEECCEeCCC--CChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--P---TAGLIAIDGIDISS--IGLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~--~---~~G~i~~~g~~~~~--~~~~ 314 (489)
.|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999974 359999999999999999999999999999999999975 4 59999999998864 2344
Q ss_pred HhhccceEEcCCCccCccchhhhcCCC---CCC-c----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPL---EEY-A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~---~~~-~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
.+++.++|++|++.+|+.|+++|+.+. ... . ++++.++++.+++.+.+. ........+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHHH
Confidence 677889999999999989999999753 111 1 234566677777654332 2344556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|++||||++++|+++||||||++||+.+.+.+.+.|.++.++.|+|+|||+++.+.. ||+|++|++|++++.|+..++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999887667899999999999876 9999999999999999999998
Q ss_pred hcCC
Q 011281 466 ENKS 469 (489)
Q Consensus 466 ~~~~ 469 (489)
.++.
T Consensus 236 ~~~~ 239 (252)
T PRK14255 236 LNPK 239 (252)
T ss_pred cCCC
Confidence 7643
No 228
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4.8e-45 Score=365.23 Aligned_cols=203 Identities=24% Similarity=0.368 Sum_probs=176.7
Q ss_pred EECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccC
Q 011281 251 RYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 330 (489)
Q Consensus 251 ~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 330 (489)
+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4643 358999999999999999999999999999999999999999999999999875 3456788999999999998
Q ss_pred cc-chhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEE
Q 011281 331 EG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 402 (489)
Q Consensus 331 ~~-ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ill 402 (489)
+. |++||+.+.. ..+ ++++.++++.+++.+..++. ..+||||||||++|||||+++|+++|
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRP-----------VGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCc-----------hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76 9999997521 111 34577888888886654332 34689999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 403 LDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 403 lDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|||||++||+.+.+.+++.|+++. +++|+|++||+++.+.. ||+|++|++|+++..|+++++.+.
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999998764 47899999999999986 999999999999999999998754
No 229
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-44 Score=360.66 Aligned_cols=219 Identities=27% Similarity=0.475 Sum_probs=188.4
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEeCCCC--C
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-----PTAGLIAIDGIDISSI--G 312 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-----~~~G~i~~~g~~~~~~--~ 312 (489)
...|+++||+++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 346999999999975 359999999999999999999999999999999999986 6899999999998643 3
Q ss_pred hHHhhccceEEcCCCccCccchhhhcCCCCC--------------------CcHHHHHHHHHHcCCcHHHHhccccccch
Q 011281 313 LHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE--------------------YADEEIWEALDKCQLGNEVRKNEGKLESR 372 (489)
Q Consensus 313 ~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~--------------------~~~~~~~~~~~~~~l~~~i~~l~~gldt~ 372 (489)
...+|+.++|++|++.+|+.|++||+.++.. ..++++.++++.+++.+.+ ++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV-------NDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-------hHH
Confidence 4567889999999999999999999975310 0134566777777765433 344
Q ss_pred hhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEE-EEE
Q 011281 373 VTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV-LLL 450 (489)
Q Consensus 373 vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i-~~l 450 (489)
+.....+||||||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 56667889999999999999999999999999999999999999999999987667899999999999876 9997 578
Q ss_pred eCCEEEEecChhHHhhc
Q 011281 451 SYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 451 ~~G~i~~~g~~~el~~~ 467 (489)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999999764
No 230
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-45 Score=332.01 Aligned_cols=212 Identities=25% Similarity=0.374 Sum_probs=188.9
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
+++.+++.+|++. ..+++||||+++.||+++|.|||||||||+++.|++++.|++|.|.+||.|.... +...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 6789999999863 2389999999999999999999999999999999999999999999999999775 4578999999
Q ss_pred EcCCCccCcc-chhhhcCCC-------CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFEG-SVHNNLDPL-------EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~-------~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++-+..++.. |.+|||.++ +...+.++.+..+..++.+.+++ ++|+ +|-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~r-------Rv~~----~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR-------RVGE----FSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHH-------HHhh----hchhhHHHHHHHHHH
Confidence 9988888865 999999764 12235678888888888887654 4433 699999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
+++|++++||||||+||..+.+.+++.+.+.+ ++++||+.||.++.++. ||||+++.+|+++..|+.+++.+.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999999999998876 48999999999999996 999999999999999999999865
No 231
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.6e-44 Score=354.58 Aligned_cols=221 Identities=22% Similarity=0.295 Sum_probs=186.3
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCC-----Ch
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSI-----GL 313 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~-----~~ 313 (489)
-|+++||+++|++ ..+++|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999964 35899999999999999999999999999999999999986 49999999988653 23
Q ss_pred HHhhccceEEcCCCccCcc-chhhhcCCCCC---------------CcHHHHHHHHHHcCCcHHHHhccccccchhhcCC
Q 011281 314 HDLRSRLSIIPQDPTMFEG-SVHNNLDPLEE---------------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENG 377 (489)
Q Consensus 314 ~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~---------------~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G 377 (489)
..+++.++|+||++.+|+. |+++|+.+... ...+++.++++..++.+..++ ..
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~ 150 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RV 150 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Cc
Confidence 4567889999999998874 99999975310 113457778888887665443 33
Q ss_pred CCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCE
Q 011281 378 ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGL 454 (489)
Q Consensus 378 ~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 454 (489)
..||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .+.|+|++||+++.+.. ||+|++|++|+
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~ 230 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 5689999999999999999999999999999999999999999998864 37899999999998765 99999999999
Q ss_pred EEEecChhHHhhcCCChHHHHHHH
Q 011281 455 IEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 455 i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
+++.|+++++ .. ....+++..
T Consensus 231 i~~~g~~~~~-~~--~~~~~~~~~ 251 (262)
T PRK09984 231 VFYDGSSQQF-DN--ERFDHLYRS 251 (262)
T ss_pred EEEeCCHHHh-cc--HHHHHHHhh
Confidence 9999999996 32 345555544
No 232
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.5e-44 Score=354.05 Aligned_cols=222 Identities=22% Similarity=0.352 Sum_probs=182.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEe-----CCCCChHH-
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID-----ISSIGLHD- 315 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~-----~~~~~~~~- 315 (489)
.++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 4899999999975 359999999999999999999999999999999999999999999999998 77665544
Q ss_pred ---hhccceEEcCCCc--cCc-cchhhhcCCC----CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCC
Q 011281 316 ---LRSRLSIIPQDPT--MFE-GSVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 381 (489)
Q Consensus 316 ---~r~~i~~v~Q~~~--lf~-~ti~~Ni~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LS 381 (489)
.++.++|++|++. ++. .|+.+|+.+. .... .+++.++++.+++.+ +.+...+..||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS 153 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTFS 153 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccCC
Confidence 3567999999984 444 4788887431 1111 233445555555432 23455667899
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEe
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEF 458 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 458 (489)
||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++..+ +.|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 ~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999987643 7899999999999985 999999999999999
Q ss_pred cChhHHhhcCCChHHHH
Q 011281 459 DSPTRLLENKSSSFAQL 475 (489)
Q Consensus 459 g~~~el~~~~~~~~~~l 475 (489)
|+++++..++...|.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~ 250 (258)
T PRK11701 234 GLTDQVLDDPQHPYTQL 250 (258)
T ss_pred CCHHHHhcCCCCHHHHH
Confidence 99999986644455443
No 233
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=354.14 Aligned_cols=226 Identities=27% Similarity=0.384 Sum_probs=190.1
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC------EeCCCCChH
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG------IDISSIGLH 314 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g------~~~~~~~~~ 314 (489)
+.++++|++++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++...+..
T Consensus 9 ~~i~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYINDK--AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCCc--eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 459999999999653 589999999999999999999999999999999999999997666655 566666666
Q ss_pred HhhccceEEcCCCccCcc-chhhhcCCCC---C-CcH----HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 315 DLRSRLSIIPQDPTMFEG-SVHNNLDPLE---E-YAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~---~-~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
.+|+.++|++|++.+|++ |+++|+.+.. . ..+ +++.++++.+++.+++. .........||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 788999999999999875 9999997531 1 122 34567788888765431 123345667999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
||++||||++.+|+++||||||++||+.++..+.+.|.++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999887667999999999999965 999999999999999999999
Q ss_pred hhcCCChHHHH
Q 011281 465 LENKSSSFAQL 475 (489)
Q Consensus 465 ~~~~~~~~~~l 475 (489)
.+.+...|.+.
T Consensus 240 ~~~~~~~~~~~ 250 (257)
T PRK14246 240 FTSPKNELTEK 250 (257)
T ss_pred HhCCCcHHHHH
Confidence 87655455444
No 234
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.1e-44 Score=344.81 Aligned_cols=201 Identities=21% Similarity=0.354 Sum_probs=176.5
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++||+++|++ .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .+++.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999963 467999999999999999999999999999999999999999999999987543 46778999
Q ss_pred EcCCCccCcc-chhhhcCCC--CC-----CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFEG-SVHNNLDPL--EE-----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~--~~-----~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++|++.+|.. |++||+.+. .. ..++++.++++.+++.+...+.|. .||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHHHHHHHH
Confidence 9999999875 999999652 11 124567889999999877766654 5799999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 460 (489)
+++|+++||||||++||+.+.+.+.+.|.+.. .+.|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999998764 37899999999999875 99999999999998874
No 235
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-44 Score=349.46 Aligned_cols=210 Identities=23% Similarity=0.384 Sum_probs=184.3
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|++++|++ + +++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE--F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC--c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999964 2 7999999999999999999999999999999999999999999999999876544 3678999
Q ss_pred EcCCCccCc-cchhhhcCCCC---CC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFE-GSVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~~---~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++|++.+|+ .|++||+.+.. .. .++++.++++.+++.+++.+.+ ..||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHH
Confidence 999999986 69999997531 11 2345678888998877765544 46899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 468 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~ 468 (489)
+++|++++|||||++||+.+.+.+.+.+++... ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999987643 7899999999999876 9999999999999999999998753
No 236
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-45 Score=348.72 Aligned_cols=205 Identities=28% Similarity=0.394 Sum_probs=184.2
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhh----ccceEEcCCCccCc-cc
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR----SRLSIIPQDPTMFE-GS 333 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~~lf~-~t 333 (489)
-++|+||+++.||+..|.|=||||||||++++.|+++|+.|+|+++|.|+..++.+++| +++++|+|..-||+ .|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 37899999999999999999999999999999999999999999999999999977753 57999999999886 59
Q ss_pred hhhhcCCCCC---Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCC
Q 011281 334 VHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 406 (489)
Q Consensus 334 i~~Ni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEp 406 (489)
|.||..|+-+ .+ +++..++++.+||..|-.+.|+. ||||+|||+.|||||..+|+||++|||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~e-----------LSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNE-----------LSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCccc-----------ccchHHHHHHHHHHHccCCCEEEecCc
Confidence 9999998622 22 45678899999999999988865 599999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 011281 407 TASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 474 (489)
Q Consensus 407 ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~ 474 (489)
+|+|||--+..+++.|.++. -+||+|+|||+++++-+ .|||..|++|+|++.|+++|++.+|...|-.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 99999999999999887653 37999999999998776 9999999999999999999999987666643
No 237
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=3.8e-42 Score=360.55 Aligned_cols=410 Identities=18% Similarity=0.175 Sum_probs=283.3
Q ss_pred HHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH---------------HHHHHHHHHHHHHHHHHHHHH
Q 011281 21 VLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQV---------------FIAFIPVIAISIWYQQYYLPS 85 (489)
Q Consensus 21 il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l---------------~l~~~~~~~l~~~~~~~~~~~ 85 (489)
.=+|+..|+..+..........++.++++++...++++..+-.+ ..+++...+...++...+.+.
T Consensus 150 pDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~ 229 (604)
T COG4178 150 PDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRP 229 (604)
T ss_pred hHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccc
Confidence 44899999999887766677777888877777766665333221 111111111122233355566
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHH----hhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 86 ARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVD----GYSRPKFHIAAAMQWLCFHIDMLSSIIFV 161 (489)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (489)
..+.........+.+...+.-.-++.+.|-.|+-|+..+.+..+... ++.+..... ....|.+.....++. +
T Consensus 230 Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~-~~l~~~~~gy~~~s~---v 305 (604)
T COG4178 230 LIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQ-IRLTWFQLGYGWLSV---V 305 (604)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHhhhhhhHHHH---H
Confidence 55555555566677778888888999999999877655544443333 332221111 112222222211111 1
Q ss_pred HHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCcccccCCCCCCC
Q 011281 162 FSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPN---EPPLVIEASRPNCSW 237 (489)
Q Consensus 162 ~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~---~~~~~~~~~~~~~~~ 237 (489)
+-.+.. -.+..|.++.+.+............-+.++...+..+....++..|+.++...-+ .++............
T Consensus 306 ~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~ 385 (604)
T COG4178 306 LPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDF 385 (604)
T ss_pred HHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccc
Confidence 111111 1234677765544444433333333344456667778888899999998864221 111100000000000
Q ss_pred CC--CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH
Q 011281 238 PS--QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD 315 (489)
Q Consensus 238 ~~--~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~ 315 (489)
.. ...|+++|++..-|+.. ..+++++|++++||.+.|.||||||||||+|+|+|+||..+|+|.+-.
T Consensus 386 ~~~~~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~---------- 454 (604)
T COG4178 386 DDNADHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA---------- 454 (604)
T ss_pred cccccceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC----------
Confidence 11 46799999999998765 589999999999999999999999999999999999999999997641
Q ss_pred hhccceEEcCCCccCccchhhhcCCCC---CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 316 LRSRLSIIPQDPTMFEGSVHNNLDPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 316 ~r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
-..+-|+||.|++..||+||-+++.. +.+++++.+++.+|||.++++++.+-- .-..-||+||||||++||
T Consensus 455 -~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafAR 528 (604)
T COG4178 455 -DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFAR 528 (604)
T ss_pred -CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHH
Confidence 12578999999999999999999852 378999999999999999999875432 255679999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEe
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLS 451 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 451 (489)
.++++|++++|||+|||||++++..+++.+++..++.|+|.|+||.......++.+-+.
T Consensus 529 ilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999999999999999999889999999999998888766655553
No 238
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-44 Score=353.40 Aligned_cols=211 Identities=26% Similarity=0.335 Sum_probs=183.3
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCC--------CceEEECCEeCCCCChH
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT--------AGLIAIDGIDISSIGLH 314 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~--------~G~i~~~g~~~~~~~~~ 314 (489)
|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 6899999999643 5999999999999999999999999999999999999998 99999999999887777
Q ss_pred HhhccceEEcCCCc-cCccchhhhcCCCC-C-------C---cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCc
Q 011281 315 DLRSRLSIIPQDPT-MFEGSVHNNLDPLE-E-------Y---ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 382 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~-lf~~ti~~Ni~~~~-~-------~---~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSg 382 (489)
.+++.++|++|++. +|..|++||+.+.. . . .++++.++++.+++.+. ++.....|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSg 148 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATAL-----------VGRDVTTLSG 148 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCH
Confidence 78888999999986 56789999997631 1 1 12346667777766543 3344567999
Q ss_pred hHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEE
Q 011281 383 GQRQLVCLARVLL---------KKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLL 450 (489)
Q Consensus 383 Gq~Qrl~laRall---------~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l 450 (489)
|||||++|||||+ .+|++|||||||++||+.+.+.+.+.+.++.+ ++|+|+|||+++.+.. ||++++|
T Consensus 149 G~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l 228 (272)
T PRK13547 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML 228 (272)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 9999999999999 59999999999999999999999999987643 7899999999999875 9999999
Q ss_pred eCCEEEEecChhHHhh
Q 011281 451 SYGLIEEFDSPTRLLE 466 (489)
Q Consensus 451 ~~G~i~~~g~~~el~~ 466 (489)
++|+|++.|+++++.+
T Consensus 229 ~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 229 ADGAIVAHGAPADVLT 244 (272)
T ss_pred ECCeEEEecCHHHHcC
Confidence 9999999999999865
No 239
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-44 Score=333.27 Aligned_cols=215 Identities=25% Similarity=0.412 Sum_probs=186.7
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh-hccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 320 (489)
-++++||+..|++. .+|++|||++++||+++++||||+|||||+++|+|+.+|.+|+|.++|.|++..++.+. |..|
T Consensus 3 mL~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 47899999999763 59999999999999999999999999999999999999999999999999999987764 6779
Q ss_pred eEEcCCCccCcc-chhhhcCCCCCC-cH----H-HHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLEEY-AD----E-EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~~~-~~----~-~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
+||||.-.+|+. ||+||+.++... .+ + .++++.+. .| -|..+....+.+|||||+|-+|||||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~l---------FP-~Lker~~~~aG~LSGGEQQMLAiaRA 150 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYEL---------FP-RLKERRNQRAGTLSGGEQQMLAIARA 150 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHH---------Ch-hHHHHhcCcccCCChHHHHHHHHHHH
Confidence 999999999986 999999875211 11 1 13333332 23 24556677888999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 468 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~ 468 (489)
|+.+|++|+|||||.+|-|.-.++|.+.|+++.+ +.||++|-++...+.. +||.+||++|+|+.+|+.+||.+++
T Consensus 151 Lm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 151 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred HhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999999998763 5699999999998776 9999999999999999999999763
No 240
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=5.3e-44 Score=349.33 Aligned_cols=223 Identities=22% Similarity=0.300 Sum_probs=184.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC----CCceEEECCEeCCCCChHHhh
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP----TAGLIAIDGIDISSIGLHDLR 317 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~r 317 (489)
.++++|++++| + .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 3 2589999999999999999999999999999999999999 999999999988632 2234
Q ss_pred ccceEEcCCCc-cCc--cchhhhcCC-----CCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 318 SRLSIIPQDPT-MFE--GSVHNNLDP-----LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 318 ~~i~~v~Q~~~-lf~--~ti~~Ni~~-----~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
+.++||+|++. .|. .|+.+|+.. +....++++.++++.+++.++ ++.++.....||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHH
Confidence 67999999985 343 478777632 222345678888998888653 12345556789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
|||||+++|++|||||||++||+.+.+.+.+.|+++. .+.|+|++||+++.+.. |||+++|++|++++.|+.+++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 9999999999999999999999999999999998764 37899999999999875 99999999999999999999987
Q ss_pred cCCCh-HHHHHH
Q 011281 467 NKSSS-FAQLVA 477 (489)
Q Consensus 467 ~~~~~-~~~l~~ 477 (489)
.+... .+.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (254)
T PRK10418 231 APKHAVTRSLVS 242 (254)
T ss_pred CCCCHHHHHHHH
Confidence 64333 333443
No 241
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.4e-44 Score=372.75 Aligned_cols=229 Identities=26% Similarity=0.355 Sum_probs=194.7
Q ss_pred CccEEEEEEEEEECCC---------CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEe--C
Q 011281 240 QGEVDIHGLQVRYAPH---------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID--I 308 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~---------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~--~ 308 (489)
.+-++++||+..|... ...+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.+ +
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 3458899999999731 2358999999999999999999999999999999999999999999999987 2
Q ss_pred CCCChHHhhccceEEcCCCcc--C-ccchhhhcCC----CCC----CcHHHHHHHHHHcCCcH-HHHhccccccchhhcC
Q 011281 309 SSIGLHDLRSRLSIIPQDPTM--F-EGSVHNNLDP----LEE----YADEEIWEALDKCQLGN-EVRKNEGKLESRVTEN 376 (489)
Q Consensus 309 ~~~~~~~~r~~i~~v~Q~~~l--f-~~ti~~Ni~~----~~~----~~~~~~~~~~~~~~l~~-~i~~l~~gldt~vge~ 376 (489)
+.-.....|+.+-+|+|||+- - ..||+++|.- ... ..++++.+.++.++|.+ +..+.|+
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~--------- 428 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPH--------- 428 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCch---------
Confidence 222244577899999999984 2 3599999852 111 12346888899999986 4555554
Q ss_pred CCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCC
Q 011281 377 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYG 453 (489)
Q Consensus 377 G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G 453 (489)
.||||||||+||||||+.+|+++|+|||||+||+.+...+.+.|+++.+ |-|.++|||++..++. ||||.||++|
T Consensus 429 --elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G 506 (539)
T COG1123 429 --ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506 (539)
T ss_pred --hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECC
Confidence 4699999999999999999999999999999999999999999987653 6899999999999998 9999999999
Q ss_pred EEEEecChhHHhhcCCChHHHHHHHH
Q 011281 454 LIEEFDSPTRLLENKSSSFAQLVAEY 479 (489)
Q Consensus 454 ~i~~~g~~~el~~~~~~~~~~l~~~~ 479 (489)
+|||.|+.+++.+++..+|.+.+...
T Consensus 507 ~iVE~G~~~~v~~~p~h~Ytr~L~~a 532 (539)
T COG1123 507 RIVEEGPTEKVFENPQHPYTRKLLAA 532 (539)
T ss_pred eEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 99999999999998888888776543
No 242
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-44 Score=330.66 Aligned_cols=171 Identities=39% Similarity=0.675 Sum_probs=160.3
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|++++|++..+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 46899999997643358999999999999999999999999999999999999999999999999988877778889999
Q ss_pred EcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEE
Q 011281 323 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 402 (489)
Q Consensus 323 v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ill 402 (489)
++|++.+|+.|+.||+ ||||||||++||||++.+|+++|
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999997 89999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCE
Q 011281 403 LDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGL 454 (489)
Q Consensus 403 lDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 454 (489)
|||||++||+.+.+.+.+.+.++.+++|+|++||+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999988766789999999999998899999999985
No 243
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.9e-44 Score=366.74 Aligned_cols=211 Identities=23% Similarity=0.337 Sum_probs=181.0
Q ss_pred EEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----hHHhhccceE
Q 011281 247 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHDLRSRLSI 322 (489)
Q Consensus 247 ~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~r~~i~~ 322 (489)
|++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....++.++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 889999642 35 999999999999999999999999999999999999999999999986532 2356788999
Q ss_pred EcCCCccCcc-chhhhcCCCC-CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 323 IPQDPTMFEG-SVHNNLDPLE-EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~~-~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
++|++.+|+. |++||+.++. ... ++++.++++.+++.++.++.| ..||||||||++|||||+.
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP-----------GRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 9999999975 9999998642 111 235778888888876655444 4689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChH
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 472 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~~~ 472 (489)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+...|
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 9999999999999999999999999987643 7899999999999876 99999999999999999999987654333
No 244
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-44 Score=350.46 Aligned_cols=201 Identities=25% Similarity=0.289 Sum_probs=174.2
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 689999999965 3599999999999999999999999999999999999999999999999988642 245899
Q ss_pred EcCCCccCc-cchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFE-GSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
++|++.+|+ .|+++|+.+.. ... ++++.++++.+++.+...+. ..+||||||||++|||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrl~laral 143 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRY-----------IWQLSGGQRQRVGIARAL 143 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999887 59999997631 112 34577788888886654433 356899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEe--CCEEEEecCh
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLS--YGLIEEFDSP 461 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~--~G~i~~~g~~ 461 (489)
+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+.. ||+|++|+ +|+|++.++.
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999998763 47899999999999876 99999998 5999998765
No 245
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=8.6e-44 Score=341.17 Aligned_cols=204 Identities=25% Similarity=0.379 Sum_probs=178.6
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 468999999974 35999999999999999999999999999999999999999999999999875321 357999
Q ss_pred EcCCCccCc-cchhhhcCCC---CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 323 IPQDPTMFE-GSVHNNLDPL---EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~---~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
++|++.+|. .|++||+.+. ....++++.++++..++.++.+..+ ..||||||||++||||++++|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA-----------KQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH-----------hhCCHHHHHHHHHHHHHhcCC
Confidence 999999886 5999999652 2334667888999999887654433 458999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~e 463 (489)
+++||||||++||+.+.+.+.+.|.+.. +++|+|++||+++.+.. ||+|++|++|++++.|+..+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998764 47899999999999865 99999999999999998765
No 246
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.7e-44 Score=343.91 Aligned_cols=202 Identities=22% Similarity=0.318 Sum_probs=176.0
Q ss_pred EEEEEEEEEECCCC--CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH---Hhh
Q 011281 243 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH---DLR 317 (489)
Q Consensus 243 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~r 317 (489)
++++|+++.|++.. +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999997531 4589999999999999999999999999999999999999999999999999766543 467
Q ss_pred ccceEEcCCCccCc-cchhhhcCCCC----CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH
Q 011281 318 SRLSIIPQDPTMFE-GSVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl 388 (489)
+.++|++|++.+|. .|+.+|+.+.. ..+ .+++.++++.+++.+++.+.| ..||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 88999999999987 59999997531 222 235777888888877766655 35799999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCEE
Q 011281 389 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLI 455 (489)
Q Consensus 389 ~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i 455 (489)
+||||++++|+++||||||++||+++.+.+.+.|+++. .++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998765 37999999999997767999999999986
No 247
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1e-43 Score=349.79 Aligned_cols=225 Identities=24% Similarity=0.333 Sum_probs=185.8
Q ss_pred cEEEEEEEEEECCC-------CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh-
Q 011281 242 EVDIHGLQVRYAPH-------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL- 313 (489)
Q Consensus 242 ~i~~~~v~~~y~~~-------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~- 313 (489)
.|+++||+++|++. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 37899999999741 2469999999999999999999999999999999999999999999999999887654
Q ss_pred --HHhhccceEEcCCCc--cCc-cchhhhcCCC----CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCC
Q 011281 314 --HDLRSRLSIIPQDPT--MFE-GSVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 380 (489)
Q Consensus 314 --~~~r~~i~~v~Q~~~--lf~-~ti~~Ni~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~L 380 (489)
..+++.++|++|++. ++. .|+.+|+.+. ...+ .+++.++++.+++... ........|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccC
Confidence 346788999999983 443 5899997431 1111 2345666666665421 223456679
Q ss_pred CchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEE
Q 011281 381 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEE 457 (489)
Q Consensus 381 SgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 457 (489)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ +.|+|++||+++.+.. ||++++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999987643 7899999999999986 99999999999999
Q ss_pred ecChhHHhhcCCChHHHHHH
Q 011281 458 FDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 458 ~g~~~el~~~~~~~~~~l~~ 477 (489)
.|+++++.+. ..+|...+.
T Consensus 233 ~g~~~~~~~~-~~~~~~~~~ 251 (268)
T PRK10419 233 TQPVGDKLTF-SSPAGRVLQ 251 (268)
T ss_pred eCChhhccCC-CCHHHHHHH
Confidence 9999999865 455544443
No 248
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-44 Score=345.99 Aligned_cols=227 Identities=25% Similarity=0.381 Sum_probs=189.1
Q ss_pred EEEEEEEEEECCCC--CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-C----CCceEEECCEeCCCCChHH
Q 011281 243 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-P----TAGLIAIDGIDISSIGLHD 315 (489)
Q Consensus 243 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-~----~~G~i~~~g~~~~~~~~~~ 315 (489)
++++|++..|.... ..+++||||++++||++||||+|||||||+.+.|+|+++ | .+|+|.++|+++-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 67899999996542 348999999999999999999999999999999999998 3 6799999999999998775
Q ss_pred ---hh-ccceEEcCCCcc-Cc--cchhhhc----CCCCCC-----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCC
Q 011281 316 ---LR-SRLSIIPQDPTM-FE--GSVHNNL----DPLEEY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 379 (489)
Q Consensus 316 ---~r-~~i~~v~Q~~~l-f~--~ti~~Ni----~~~~~~-----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~ 379 (489)
+| +.|++|||+|.- ++ -||.+.+ ...... ..++..++++.+++.+-- ..+..-..+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~--------~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE--------RRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH--------HHHhhCCcc
Confidence 33 479999999852 33 2565544 222221 135688899999997631 122233456
Q ss_pred CCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEE
Q 011281 380 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIE 456 (489)
Q Consensus 380 LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 456 (489)
||||||||+.||.|++.+|+++|.||||+|||..++.+|.+.|+++. .+.++|+|||++..+.. ||||.||..|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 79999999999999999999999999999999999999999998765 47899999999999887 9999999999999
Q ss_pred EecChhHHhhcCCChHHHHHH
Q 011281 457 EFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 457 ~~g~~~el~~~~~~~~~~l~~ 477 (489)
|.|+.+++.+++..+|.+.+-
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll 254 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLL 254 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHH
Confidence 999999999998888876554
No 249
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-44 Score=329.80 Aligned_cols=172 Identities=32% Similarity=0.486 Sum_probs=158.2
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC--hHHhhccc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG--LHDLRSRL 320 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~r~~i 320 (489)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++ ...+++.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 468999999965 35999999999999999999999999999999999999999999999999998775 56678899
Q ss_pred eEEcCCCccCcc-chhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 399 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ 399 (489)
+|++|++.+|.. |++||+.+. ||||||||++||||++++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999998864 999998753 89999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCE
Q 011281 400 VLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGL 454 (489)
Q Consensus 400 illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~ 454 (489)
++||||||++||+.+...+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999987654 5899999999999985 99999999985
No 250
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-44 Score=328.12 Aligned_cols=170 Identities=28% Similarity=0.510 Sum_probs=156.6
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|++++|++. ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4689999999753 5899999999999999999999999999999999999999999999999987665 567889999
Q ss_pred EcCCCccCcc-chhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEE
Q 011281 323 IPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 401 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~il 401 (489)
++|++.+|.+ |++||+. |||||+||++||||++++|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999886 9999973 8999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEE
Q 011281 402 VLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 455 (489)
Q Consensus 402 llDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 455 (489)
||||||++||+.+.+.+.+.|++.. ++.|+|++||+.+.+.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999998764 46899999999999885 999999999974
No 251
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.2e-43 Score=343.64 Aligned_cols=222 Identities=21% Similarity=0.322 Sum_probs=181.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEe-----CCCCChHH-
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID-----ISSIGLHD- 315 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~-----~~~~~~~~- 315 (489)
.|+++||+++|++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 48999999999743 48999999999999999999999999999999999999999999999987 66665443
Q ss_pred ---hhccceEEcCCCc--cC-ccchhhhcCC-----CC-C--CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCC
Q 011281 316 ---LRSRLSIIPQDPT--MF-EGSVHNNLDP-----LE-E--YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 381 (489)
Q Consensus 316 ---~r~~i~~v~Q~~~--lf-~~ti~~Ni~~-----~~-~--~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LS 381 (489)
+++.++|++|++. ++ ..|+.+|+.. .. . ..++++.+.++..++.+ +........||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~LS 150 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAFS 150 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhcC
Confidence 2467999999985 33 3478888742 11 1 11234455555555531 23445567899
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEe
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEF 458 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 458 (489)
||||||++|||||+.+|+++||||||++||+.+.+.+.+.|.+.. .+.|+|+|||+++.+.. ||++++|++|++++.
T Consensus 151 gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998754 37899999999999986 999999999999999
Q ss_pred cChhHHhhcCCChHHHH
Q 011281 459 DSPTRLLENKSSSFAQL 475 (489)
Q Consensus 459 g~~~el~~~~~~~~~~l 475 (489)
|+++++..++...|...
T Consensus 231 ~~~~~~~~~~~~~~~~~ 247 (253)
T TIGR02323 231 GLTDQVLDDPQHPYTQL 247 (253)
T ss_pred CCHHHHhcCCCCHHHHH
Confidence 99999986544445433
No 252
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-44 Score=336.39 Aligned_cols=213 Identities=24% Similarity=0.409 Sum_probs=188.3
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh-hccce
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRLS 321 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~ 321 (489)
+++++++.+|++- .+++||||++++||+++|+|||||||||++++|.|+|+|++|+|.++|++++.+++..+ |..|+
T Consensus 5 L~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 6799999999764 59999999999999999999999999999999999999999999999999999998876 55699
Q ss_pred EEcCCCccCcc-chhhhcCCCC-------------C------CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCC
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLE-------------E------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 381 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~-------------~------~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LS 381 (489)
-.+|.+.+|++ |+.||+..+. . ...++..+.++.+||.+..+ +...+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~-----------~~A~~Ls 151 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELAD-----------RPAGNLS 151 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhc-----------chhhcCC
Confidence 99999999986 9999986431 1 11345666777787776644 3345689
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEe
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEF 458 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 458 (489)
+||++|+.|||||+.+|++|+||||.++|.+.....+.+.|++..+ +.|+++|.|++..+.. ||||+||+.|+++.+
T Consensus 152 yG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence 9999999999999999999999999999999999999999998764 4899999999999987 999999999999999
Q ss_pred cChhHHhhcC
Q 011281 459 DSPTRLLENK 468 (489)
Q Consensus 459 g~~~el~~~~ 468 (489)
|+++|+.+++
T Consensus 232 G~P~eV~~dp 241 (250)
T COG0411 232 GTPEEVRNNP 241 (250)
T ss_pred CCHHHHhcCH
Confidence 9999999864
No 253
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.9e-43 Score=343.03 Aligned_cols=208 Identities=28% Similarity=0.412 Sum_probs=180.2
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.++++||+++|++. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECCc--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 48999999999743 599999999999999999999999999999999999999999999987 24699
Q ss_pred EEcCCCccCc---cchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 322 IIPQDPTMFE---GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 322 ~v~Q~~~lf~---~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
|++|++.++. .|+++|+.+....+++++.++++.+++.++++.. ...||||||||++||||++.+|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998765 3788988664445567889999999998776543 3468999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l 475 (489)
+++||||||++||+.+...+.+.|.+..+ ++|+|+|||+++.+.. ||+|++|++ +|++.|+++++.+. ..+.++
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~~~ 216 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFISM 216 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHHHH
Confidence 99999999999999999999999987643 7899999999999865 999999965 79999999998753 345555
Q ss_pred H
Q 011281 476 V 476 (489)
Q Consensus 476 ~ 476 (489)
+
T Consensus 217 ~ 217 (251)
T PRK09544 217 F 217 (251)
T ss_pred h
Confidence 4
No 254
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-43 Score=334.29 Aligned_cols=189 Identities=21% Similarity=0.242 Sum_probs=161.0
Q ss_pred EEEEEEEEEECCC--CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCceEEECCEeCCCCChHHhh
Q 011281 243 VDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE---PTAGLIAIDGIDISSIGLHDLR 317 (489)
Q Consensus 243 i~~~~v~~~y~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~r 317 (489)
++++||+|.|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 6899999999753 4569999999999999999999999999999999999999 89999999999987764 3567
Q ss_pred ccceEEcCCCccCcc-chhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 318 SRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
+.++|++|++.+|.. |++||+.+..... ..+....||||||||++||||+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 889999999988875 9999996531100 122335689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEec-Cchhhh-hcCEEEEEeCCEEEEec
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAH-RITSVI-DSDMVLLLSYGLIEEFD 459 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH-~~~~~~-~~d~i~~l~~G~i~~~g 459 (489)
+|+++||||||++||+.+++.+.+.+.+..+ +.|+|+++| +.+.+. .||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999988643 467666655 456665 49999999999998765
No 255
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-43 Score=347.42 Aligned_cols=209 Identities=23% Similarity=0.309 Sum_probs=175.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+++|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 58999999999643 359999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EEcCCCcc---CccchhhhcCCCC-----------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 322 IIPQDPTM---FEGSVHNNLDPLE-----------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 322 ~v~Q~~~l---f~~ti~~Ni~~~~-----------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
|++|++.+ +..++++|+.++. ...++++.++++.+++.++.++ . ...||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-------Q----IGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-------C----cccCCHHHHHH
Confidence 99999865 3457889886421 1123456778888888765433 2 34589999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
++|||||+.+|+++||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999998764 47899999999998865 9999777 89999999999986
Q ss_pred h
Q 011281 466 E 466 (489)
Q Consensus 466 ~ 466 (489)
.
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 4
No 256
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-43 Score=337.26 Aligned_cols=199 Identities=23% Similarity=0.313 Sum_probs=169.1
Q ss_pred EEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----hHHhhcc
Q 011281 244 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHDLRSR 319 (489)
Q Consensus 244 ~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~r~~ 319 (489)
++ ||+++|++. .+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+++.
T Consensus 3 ~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 3 CV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred ee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 44 899999764 24 99999999 999999999999999999999999999999999999886432 2346788
Q ss_pred ceEEcCCCccCc-cchhhhcCCCCC-----CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 320 LSIIPQDPTMFE-GSVHNNLDPLEE-----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 320 i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
++|++|++.+|+ .|+++|+.+... ..++++.++++.+++.+..+ .....||||||||++||||
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~a 145 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-----------RYPAQLSGGEKQRVALARA 145 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-----------cCcccCCHHHHHHHHHHHH
Confidence 999999999986 499999975321 12345677777777655433 3456789999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
++.+|+++||||||++||+.+.+.+.+.+.++. + ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998764 3 7899999999999875 9999999999998865
No 257
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.5e-43 Score=338.65 Aligned_cols=203 Identities=26% Similarity=0.306 Sum_probs=169.0
Q ss_pred EEEEEEEEEECCC--CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCceEEECCEeCCCCChHHhh
Q 011281 243 VDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE---PTAGLIAIDGIDISSIGLHDLR 317 (489)
Q Consensus 243 i~~~~v~~~y~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~r 317 (489)
+.++||+++|++. .+++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999875 3569999999999999999999999999999999999999 99999999999875 34678
Q ss_pred ccceEEcCCCccCcc-chhhhcCCCC-----CC-cHH----HHHH-HHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 318 SRLSIIPQDPTMFEG-SVHNNLDPLE-----EY-ADE----EIWE-ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~-----~~-~~~----~~~~-~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
+.++|++|++.+|++ |++||+.+.. .. ..+ ++.+ .++.+++.+ ........|||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-----------IGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-----------hhcccccCcCHHHH
Confidence 889999999999987 9999997531 11 111 1222 344444332 22334567999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCc-hhhh-hcCEEEEEeCCEEEEec
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRI-TSVI-DSDMVLLLSYGLIEEFD 459 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~-~~~~-~~d~i~~l~~G~i~~~g 459 (489)
||++||||++++|+++||||||++||+.+...+.+.+.+.. .++|+|++||++ +.+. .||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998764 478999999998 4555 59999999999999875
No 258
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.9e-43 Score=331.45 Aligned_cols=182 Identities=25% Similarity=0.343 Sum_probs=160.5
Q ss_pred cEEEEEEEEEECCC----CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCEeCCCCChHH
Q 011281 242 EVDIHGLQVRYAPH----LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAIDGIDISSIGLHD 315 (489)
Q Consensus 242 ~i~~~~v~~~y~~~----~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~--~~~~G~i~~~g~~~~~~~~~~ 315 (489)
.++++||+|+|++. ..++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999752 245999999999999999999999999999999999999 9999999999998864 35
Q ss_pred hhccceEEcCCCccCcc-chhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 316 LRSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 316 ~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
+++.++|++|++.+|.. |++||+.+... .. .||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~------------~~---------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK------------LR---------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH------------hc---------------------cCCHHHHHHHHHHHHH
Confidence 67889999999998875 99999853210 00 6899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCch-hhh-hcCEEEEEeCCEEEEec
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRIT-SVI-DSDMVLLLSYGLIEEFD 459 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~-~~d~i~~l~~G~i~~~g 459 (489)
+++|+++||||||++||+.+.+.+.+.|.++. +++|+|++||+++ .+. .||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998764 4789999999996 455 49999999999998754
No 259
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5.5e-43 Score=341.80 Aligned_cols=211 Identities=23% Similarity=0.261 Sum_probs=178.0
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCChHHhhc-
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGLIAIDGIDISSIGLHDLRS- 318 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~r~- 318 (489)
.++++||+++|++. .+|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+....++
T Consensus 7 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 48999999999743 599999999999999999999999999999999998 6899999999999998877665554
Q ss_pred cceEEcCCCccCcc-chhhhcCCCC----------CCc----HHHHHHHHHHcCCcH-HHHhccccccchhhcCCCCCCc
Q 011281 319 RLSIIPQDPTMFEG-SVHNNLDPLE----------EYA----DEEIWEALDKCQLGN-EVRKNEGKLESRVTENGENWSM 382 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~-ti~~Ni~~~~----------~~~----~~~~~~~~~~~~l~~-~i~~l~~gldt~vge~G~~LSg 382 (489)
.++|++|++.+|++ |+.+|+.+.. +.. .+++.++++.+++.+ ...+.+ + ..|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-------~---~~LSg 154 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV-------N---EGFSG 154 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcccc-------c---cCCCH
Confidence 48999999999886 7899875421 011 234567777777753 322222 1 14899
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh--cCEEEEEeCCEEEEec
Q 011281 383 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 383 Gq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g 459 (489)
|||||++||||++++|+++||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999998764 47899999999999875 8999999999999999
Q ss_pred ChhHH
Q 011281 460 SPTRL 464 (489)
Q Consensus 460 ~~~el 464 (489)
+++++
T Consensus 235 ~~~~~ 239 (252)
T CHL00131 235 DAELA 239 (252)
T ss_pred Chhhh
Confidence 99844
No 260
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=5.4e-43 Score=330.03 Aligned_cols=185 Identities=26% Similarity=0.340 Sum_probs=162.5
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCChHHh-hcc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGLIAIDGIDISSIGLHDL-RSR 319 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~~ 319 (489)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.+||+++...+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 468999999974 3599999999999999999999999999999999999 58999999999999988776554 456
Q ss_pred ceEEcCCCccCcc-chhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 320 LSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 320 i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
++|++|++.+|++ |+++|+ .. ....||||||||++||||++++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999876 565554 00 11468999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh--hcCEEEEEeCCEEEEecChhHHh
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVI--DSDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~--~~d~i~~l~~G~i~~~g~~~el~ 465 (489)
+++||||||++||+.+.+.+.+.|.+.. +++|+|++||+++.+. .||++++|++|++++.|+ .|+.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~-~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD-KELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEcc-HHHH
Confidence 9999999999999999999999998764 4789999999999998 599999999999999994 5554
No 261
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-43 Score=381.61 Aligned_cols=226 Identities=26% Similarity=0.362 Sum_probs=190.2
Q ss_pred ccEEEEEEEEEECCC---------CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 011281 241 GEVDIHGLQVRYAPH---------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI 311 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~---------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~ 311 (489)
..++++||++.|+.. ...+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 359999999999621 13589999999999999999999999999999999999999999999999999876
Q ss_pred ChH---HhhccceEEcCCCc--cCc-cchhhhcCCC---CCC-----cHHHHHHHHHHcCCc-HHHHhccccccchhhcC
Q 011281 312 GLH---DLRSRLSIIPQDPT--MFE-GSVHNNLDPL---EEY-----ADEEIWEALDKCQLG-NEVRKNEGKLESRVTEN 376 (489)
Q Consensus 312 ~~~---~~r~~i~~v~Q~~~--lf~-~ti~~Ni~~~---~~~-----~~~~~~~~~~~~~l~-~~i~~l~~gldt~vge~ 376 (489)
+.. .+|+.|+||+|+++ +++ .|+.+|+.+. ... ..+++.++++.+++. +..++.|
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~---------- 461 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP---------- 461 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc----------
Confidence 543 35678999999984 665 4999998642 111 124677888888885 4444433
Q ss_pred CCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCC
Q 011281 377 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYG 453 (489)
Q Consensus 377 G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G 453 (489)
..||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .+.|+|+|||+++.+.. ||||++|++|
T Consensus 462 -~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G 540 (623)
T PRK10261 462 -HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLG 540 (623)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 4579999999999999999999999999999999999999999998764 37899999999999887 9999999999
Q ss_pred EEEEecChhHHhhcCCChHHH-HHH
Q 011281 454 LIEEFDSPTRLLENKSSSFAQ-LVA 477 (489)
Q Consensus 454 ~i~~~g~~~el~~~~~~~~~~-l~~ 477 (489)
+|++.|+.+++..++..+|.. ++.
T Consensus 541 ~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 541 QIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EEEEecCHHHHhcCCCCHHHHHHHh
Confidence 999999999998765556654 444
No 262
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.5e-43 Score=333.76 Aligned_cols=193 Identities=26% Similarity=0.349 Sum_probs=165.2
Q ss_pred EEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh----HHhhccc
Q 011281 245 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL----HDLRSRL 320 (489)
Q Consensus 245 ~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~r~~i 320 (489)
++||++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..+.. ...++.+
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4689999974 359999999999999999999999999999999999999999999999999764432 2356789
Q ss_pred eEEcCCCccCc-cchhhhcCCCC---C----CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 321 SIIPQDPTMFE-GSVHNNLDPLE---E----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 321 ~~v~Q~~~lf~-~ti~~Ni~~~~---~----~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
+|++|++.+|+ .|++||+.+.. . ...+++.++++..++.++.++. ..+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQK-----------IYELSGGEQQRVALAR 147 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 99999999987 59999997521 1 1235677888888886654332 3568999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEE
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL 450 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l 450 (489)
||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998764 478999999999988789999875
No 263
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=4.7e-43 Score=324.99 Aligned_cols=177 Identities=32% Similarity=0.478 Sum_probs=159.8
Q ss_pred EEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEE
Q 011281 244 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 323 (489)
Q Consensus 244 ~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 323 (489)
+++||+++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999975 3599999999999999999999999999999999999999999999999999888887888889999
Q ss_pred cCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEE
Q 011281 324 PQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVL 403 (489)
Q Consensus 324 ~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illl 403 (489)
+| +++.+++.+++.+ ....||||||||++||||++++|+++||
T Consensus 79 ~q--------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99 7777887766543 3457899999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 404 DEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 404 DEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
||||++||+++.+.+.+.|.+..+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999987654 7899999999999865 9999999999998754
No 264
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-43 Score=329.17 Aligned_cols=181 Identities=22% Similarity=0.278 Sum_probs=159.2
Q ss_pred cEEEEEEEEEECCC--CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCEeCCCCChHHhh
Q 011281 242 EVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAIDGIDISSIGLHDLR 317 (489)
Q Consensus 242 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~r 317 (489)
.|+++|+++.|++. .+++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 47899999999752 245899999999999999999999999999999999986 489999999999875 4567
Q ss_pred ccceEEcCCCccCcc-chhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 318 SRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
+.++|++|++.+|.. |+++|+.+.. .++ .||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~~~------------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------LLR------------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------HHh------------------------cCCHHHhHHHHHHHHHhc
Confidence 889999999988875 9999986421 000 789999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchh-h-hhcCEEEEEeC-CEEEEec
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS-V-IDSDMVLLLSY-GLIEEFD 459 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l~~-G~i~~~g 459 (489)
+|+++||||||++||+.+.+.+.+.+.+.. +++|+|+|||+++. + ..||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999998764 47899999999984 4 55999999999 9999865
No 265
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4e-43 Score=326.03 Aligned_cols=172 Identities=27% Similarity=0.446 Sum_probs=155.7
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh-HHhhccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 320 (489)
.++++|++++| +++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.+
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 7999999999999999999999999999999999999999999999999988763 4567889
Q ss_pred eEEcCCC---ccCc-cchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 321 SIIPQDP---TMFE-GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 321 ~~v~Q~~---~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
+|++|++ .+++ .|++||+.+... ||||||||++||||+++
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 3554 699999865311 89999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEE
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 455 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 455 (489)
+|+++||||||++||+.+.+.+.+.+.+.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999998764 47899999999998887 999999999975
No 266
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9e-43 Score=372.85 Aligned_cols=212 Identities=22% Similarity=0.359 Sum_probs=185.2
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhh-ccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR-SRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~i 320 (489)
.|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999974 3599999999999999999999999999999999999999999999999999877766554 469
Q ss_pred eEEcCCCccCcc-chhhhcCCCCC---CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLEE---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~~---~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
+|++|++.+|.. |++||+.+... ..++++.++++.+++.++.++. ...||||||||++|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSS-----------AGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCC-----------hhhCCHHHHHHHHHHHHHHc
Confidence 999999998875 99999987422 1245677888888876543322 34589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998764 47899999999999876 99999999999999999988764
No 267
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=6.5e-43 Score=319.65 Aligned_cols=164 Identities=27% Similarity=0.350 Sum_probs=149.8
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|++++|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +.++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4689999999644 35999999999999999999999999999999999999999999999872 57999
Q ss_pred EcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEE
Q 011281 323 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 402 (489)
Q Consensus 323 v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ill 402 (489)
++|++.+++.|++||+.+. ....||||||||++||||++++|+++|
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999888999999753 236799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCE
Q 011281 403 LDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGL 454 (489)
Q Consensus 403 lDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 454 (489)
|||||++||+.+.+.+.+.+.+. ++|+|++||+++....||++++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999876 589999999999887799999998763
No 268
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-43 Score=308.54 Aligned_cols=191 Identities=26% Similarity=0.393 Sum_probs=173.2
Q ss_pred CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchh
Q 011281 256 LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVH 335 (489)
Q Consensus 256 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 335 (489)
..++|+|+||++.+||+++|+||||||||||+|.++-+.+|++|.+++.|++++.++++.+|++|+|+-|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCC-----CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 011281 336 NNLDPL-----EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 410 (489)
Q Consensus 336 ~Ni~~~-----~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~l 410 (489)
+|+.|. +..+.....+.+.++++.+.+ +..+..+||||||||++|+|-|---|+||+||||||+|
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 999773 344566778888888887654 34556789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCceEEEEecCchh-hhhcCEEEEEeCCEEE
Q 011281 411 DTATDNLIQHTLGQHF--SDCTVITIAHRITS-VIDSDMVLLLSYGLIE 456 (489)
Q Consensus 411 D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~-~~~~d~i~~l~~G~i~ 456 (489)
|+.+.+.|.+.|.++. ++..++.|||+... ++++|+++-+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999999998876 46799999999887 7779999999999863
No 269
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.2e-42 Score=338.57 Aligned_cols=205 Identities=22% Similarity=0.301 Sum_probs=175.5
Q ss_pred EEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEE
Q 011281 244 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 323 (489)
Q Consensus 244 ~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 323 (489)
+++||++. .+|+|+||++++||+++|+||||||||||+++|+|++++ +|+|.++|.++...+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 46777774 179999999999999999999999999999999999864 89999999999888877788889999
Q ss_pred cCCCccC-ccchhhhcCCCCC--Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 324 PQDPTMF-EGSVHNNLDPLEE--YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 324 ~Q~~~lf-~~ti~~Ni~~~~~--~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
+|++.++ ..|+++|+.+... .. .+++.++++.+++.+...+ ....||||||||++||||++.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR-----------SVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhc
Confidence 9998654 5699999976421 11 3456777888777554433 345689999999999999997
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 397 -------KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 397 -------~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998764 47899999999997765 99999999999999999999875
No 270
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=360.09 Aligned_cols=228 Identities=26% Similarity=0.377 Sum_probs=194.4
Q ss_pred cEEEEEEEEEECCCCC--cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCC----CceEEECCEeCCCCChHH
Q 011281 242 EVDIHGLQVRYAPHLP--LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT----AGLIAIDGIDISSIGLHD 315 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~--~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~----~G~i~~~g~~~~~~~~~~ 315 (489)
-++++|++..|..... .+++||||++.+||++||||+|||||||+.+.|+|+.++. +|+|.++|.++..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975432 4899999999999999999999999999999999999987 899999999998888765
Q ss_pred h---h-ccceEEcCCCc-cCcc--chhhhcC----CCC----CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCC
Q 011281 316 L---R-SRLSIIPQDPT-MFEG--SVHNNLD----PLE----EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENW 380 (489)
Q Consensus 316 ~---r-~~i~~v~Q~~~-lf~~--ti~~Ni~----~~~----~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~L 380 (489)
+ | +.|+|+||+|. .++- ||.+-|. ... +...++..+.++.+++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 4 3 56999999986 4543 7766653 222 1234567888999999776554 2234567
Q ss_pred CchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEE
Q 011281 381 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 457 (489)
Q Consensus 381 SgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 457 (489)
|||||||+.||+||+.+|++||+||||.+||+.++.+|.+.|+++. .|.++|+|||++..+.. ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865 57899999999999998 99999999999999
Q ss_pred ecChhHHhhcCCChHHHHHHH
Q 011281 458 FDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 458 ~g~~~el~~~~~~~~~~l~~~ 478 (489)
.|+.+++++++..+|...+-.
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~ 256 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLA 256 (539)
T ss_pred ecCHHHHHhccCCcccHHHHh
Confidence 999999999988888766543
No 271
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=372.38 Aligned_cols=212 Identities=21% Similarity=0.316 Sum_probs=182.2
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH-hhccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 320 (489)
.|+++|++++|++ ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999964 35899999999999999999999999999999999999999999999999998776554 34679
Q ss_pred eEEcCCCccCcc-chhhhcCCCC-------CC---c----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLE-------EY---A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~-------~~---~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
+||+|++.+|.. |++||+.++. .. + .+++.++++.+++.+..++ + ..+||||||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LSgG~~ 151 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE-------K----VANLSISHK 151 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCccc-------c----hhhCCHHHH
Confidence 999999998875 9999997531 10 1 2356677888777544322 2 246899999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~e 463 (489)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++..|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999998764 47899999999999886 99999999999999999887
Q ss_pred Hhh
Q 011281 464 LLE 466 (489)
Q Consensus 464 l~~ 466 (489)
+..
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 653
No 272
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=371.60 Aligned_cols=211 Identities=22% Similarity=0.312 Sum_probs=181.2
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEeCCCCChHH-hhc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDISSIGLHD-LRS 318 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~r~ 318 (489)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999964 3599999999999999999999999999999999999996 8999999999998766544 467
Q ss_pred cceEEcCCCccCcc-chhhhcCCCCC------Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 319 RLSIIPQDPTMFEG-SVHNNLDPLEE------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~-ti~~Ni~~~~~------~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
.++||+|++.+|.. |++||+.++.. .+ .+++.++++.+++.+..++ ....||||||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqr 151 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPAT-----------PVGNLGLGQQQL 151 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCccc-----------chhhCCHHHHHH
Confidence 89999999988875 99999976421 12 2356677777776543322 234689999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
++|||||+.+|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+|+..|+.+++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999999998764 47899999999999876 9999999999999999988764
No 273
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.4e-42 Score=334.28 Aligned_cols=206 Identities=24% Similarity=0.300 Sum_probs=170.7
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC----CCceEEECCEeCCCCChHHhhccceEEcCCCc-cC-c-
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP----TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT-MF-E- 331 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf-~- 331 (489)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +..++.++|++|++. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 47899999999999999999999999999999999999 899999999998654 223468999999995 34 3
Q ss_pred cchhhhcCCC----CC---CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEe
Q 011281 332 GSVHNNLDPL----EE---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLD 404 (489)
Q Consensus 332 ~ti~~Ni~~~----~~---~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlD 404 (489)
.|+.+|+.+. .. ...+++.++++.+++.+. ++........||||||||++||||++++|+++|||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4888887431 11 123457788888887631 12234445679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHH
Q 011281 405 EATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQ 474 (489)
Q Consensus 405 Epts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~ 474 (489)
|||++||+.+.+.+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999987643 7899999999999975 9999999999999999999998654444443
No 274
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=370.48 Aligned_cols=211 Identities=22% Similarity=0.304 Sum_probs=180.5
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH-hhccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 320 (489)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 35899999999999999999999999999999999999999999999999987655444 35679
Q ss_pred eEEcCCCccCcc-chhhhcCCCCC-------Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLEE-------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~~-------~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl 388 (489)
+|++|++.+|.. |++||+.++.. .+ ++++.++++.+++.+..++ + ..+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDK-------L----VGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccC-------c----hhhCCHHHHHHH
Confidence 999999988875 99999976421 11 2356677888777554322 2 245899999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 389 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 389 ~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
+|||||+.+|++|||||||++||+.+.+.+.+.|.+.. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999999998763 47899999999999876 9999999999999999987764
No 275
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.8e-44 Score=321.19 Aligned_cols=214 Identities=24% Similarity=0.372 Sum_probs=184.6
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh-hccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 320 (489)
.+..+|+..+|.. .+++++|||++++||++++.|||||||||.+.++.|+.+|++|+|.+||.|++.+++... |-.|
T Consensus 4 ~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 4788999999964 369999999999999999999999999999999999999999999999999999998764 5569
Q ss_pred eEEcCCCccCcc-chhhhcCCC----C-C----CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPL----E-E----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~----~-~----~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
||+||+|.+|.+ ||+|||..- . + ..++++.+.++..++.+.-. ..|..||||||+|+.|
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~-----------~~a~sLSGGERRR~EI 150 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRD-----------SKAYSLSGGERRRVEI 150 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhc-----------CcccccccchHHHHHH
Confidence 999999999987 999999641 1 1 11234557777777655433 3477899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCch-hhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRIT-SVIDSDMVLLLSYGLIEEFDSPTRLLENK 468 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~~~d~i~~l~~G~i~~~g~~~el~~~~ 468 (489)
||||+.+|++++||||++++||.+-..|++.++.+. .|--|++.-|+.. ++.-|||.+++.+|+|..+|+++|+.+++
T Consensus 151 ARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 151 ARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred HHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 999999999999999999999999999999998776 4667888889866 55569999999999999999999999874
No 276
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=4.7e-42 Score=334.39 Aligned_cols=212 Identities=22% Similarity=0.260 Sum_probs=170.2
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCEeCCCCChHHhh-cc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAIDGIDISSIGLHDLR-SR 319 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~r-~~ 319 (489)
|+++||+++|++. ++++|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++..++....+ +.
T Consensus 2 i~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 6899999999753 5999999999999999999999999999999999994 79999999999999877766554 57
Q ss_pred ceEEcCCCccCcc-chhhhc-------CCCCC---Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchH
Q 011281 320 LSIIPQDPTMFEG-SVHNNL-------DPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 384 (489)
Q Consensus 320 i~~v~Q~~~lf~~-ti~~Ni-------~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq 384 (489)
++|++|++.+++. |..+++ ..... .. .+.+.+.++..++. .++.+... ...|||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~--~~~LS~G~ 150 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMP-------EDLLTRSV--NVGFSGGE 150 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCC-------hhhcccCC--CCCCCHHH
Confidence 9999999987764 443332 21110 01 12234445554442 22222111 13699999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh--cCEEEEEeCCEEEEecCh
Q 011281 385 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEFDSP 461 (489)
Q Consensus 385 ~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~ 461 (489)
|||++||||++++|+++||||||++||+.+.+.+.+.++++. .++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~ 230 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCH
Confidence 999999999999999999999999999999999999988764 36899999999999987 799999999999999998
Q ss_pred hHHh
Q 011281 462 TRLL 465 (489)
Q Consensus 462 ~el~ 465 (489)
+++.
T Consensus 231 ~~~~ 234 (248)
T PRK09580 231 TLVK 234 (248)
T ss_pred HHHH
Confidence 8553
No 277
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.2e-42 Score=325.03 Aligned_cols=194 Identities=25% Similarity=0.335 Sum_probs=168.4
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++||+++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+++.++|
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 4689999999753 5899999999999999999999999999999999999999999999999986543 467889999
Q ss_pred EcCCCccCc-cchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCE
Q 011281 323 IPQDPTMFE-GSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 400 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~i 400 (489)
++|++.++. .|++||+.+.. ...++++.++++.+++.++..+. ..+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRP-----------VAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCc-----------hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998874 69999997753 33567788899999987654332 346899999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEE
Q 011281 401 LVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLL 450 (489)
Q Consensus 401 lllDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l 450 (489)
+||||||++||+.+.+.+.+.|.+.. +++|+|++||+...+.. ||+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998764 47899999998776654 8999876
No 278
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-42 Score=328.93 Aligned_cols=196 Identities=26% Similarity=0.385 Sum_probs=173.7
Q ss_pred cEEEEEEEEEECCCC-------CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH
Q 011281 242 EVDIHGLQVRYAPHL-------PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~-------~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~ 314 (489)
-++++|++..|+... ..+++||||+|++||.++|||+|||||||+.++|+|+++|++|+|.++|.++..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478999999996432 25899999999999999999999999999999999999999999999999987654
Q ss_pred HhhccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcH-HHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGN-EVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~-~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
.....+++.+.++.+|+.+ +..+.|+ .||||||||++||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPh-----------elSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYPH-----------ELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCc-----------ccCchhhhhHHHHHH
Confidence 2223577999999999887 5556565 459999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 470 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~ 470 (489)
|+-+|++++.|||||+||...+.+|.+.+.++. .+-|.++|||+++.+++ ||||.||..|+|+|.|+.+++.+++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999998764 47899999999999998 999999999999999999999998888
Q ss_pred hHHHHHH
Q 011281 471 SFAQLVA 477 (489)
Q Consensus 471 ~~~~l~~ 477 (489)
+|-+.+-
T Consensus 204 pYTk~Ll 210 (268)
T COG4608 204 PYTKALL 210 (268)
T ss_pred HHHHHHH
Confidence 8876553
No 279
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5e-42 Score=312.86 Aligned_cols=159 Identities=29% Similarity=0.494 Sum_probs=147.2
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH-Hhhccce
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRLS 321 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i~ 321 (489)
|+++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..++.++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 4789999999753 599999999999999999999999999999999999999999999999999887653 4577899
Q ss_pred EEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEE
Q 011281 322 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 401 (489)
Q Consensus 322 ~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~il 401 (489)
|++| ||||||||++||||++++|+++
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 8999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEE
Q 011281 402 VLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 457 (489)
Q Consensus 402 llDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 457 (489)
||||||++||+.+.+.+.+.++++. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998764 47899999999998876 99999999999975
No 280
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.2e-42 Score=325.84 Aligned_cols=194 Identities=25% Similarity=0.345 Sum_probs=168.8
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+++.++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 689999999975 35899999999999999999999999999999999999999999999999987654 456788999
Q ss_pred EcCCCccCc-cchhhhcCCCC----CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 323 IPQDPTMFE-GSVHNNLDPLE----EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
++|++.+++ .|++||+.+.. ...++++.++++.+++.++.++. ...||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----------VRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHHHHHHhcC
Confidence 999998886 59999997532 13456788899999987665432 346899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEE
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLL 450 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l 450 (489)
|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998764 47899999999999977 4777766
No 281
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.2e-42 Score=332.92 Aligned_cols=190 Identities=26% Similarity=0.379 Sum_probs=163.4
Q ss_pred eeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCc-cchhhhc
Q 011281 260 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHNNL 338 (489)
Q Consensus 260 l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni 338 (489)
++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 578999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CCC-----CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCC
Q 011281 339 DPL-----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 409 (489)
Q Consensus 339 ~~~-----~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~ 409 (489)
.+. ...+ .+++.++++.+++.++.++. ...||||||||++|||||+.+|+++||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR-----------PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCC-----------hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 653 1222 23467778888876654433 346899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 410 VDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 410 lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
||+.+.+.+.+.|.+.. .++|+|+|||+++.+.. ||+|++|++|++++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998754 37899999999998876 9999999999999999876663
No 282
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.6e-42 Score=333.71 Aligned_cols=191 Identities=23% Similarity=0.335 Sum_probs=160.2
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEc-CCCccCc-cch
Q 011281 257 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP-QDPTMFE-GSV 334 (489)
Q Consensus 257 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~lf~-~ti 334 (489)
+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|++ |++.+|. .|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3589999999999999999999999999999999999999999999999987543 345678899997 5667764 599
Q ss_pred hhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCC
Q 011281 335 HNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 407 (489)
Q Consensus 335 ~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpt 407 (489)
+||+.+.. ... .+++.++++.+++.+.. ++.+ ..||||||||++||||++.+|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-------DTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------cCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99986421 122 23455667777765543 3332 458999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 408 ASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 408 s~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999998764 36899999999998876 9999999999998765
No 283
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.5e-42 Score=365.58 Aligned_cols=211 Identities=18% Similarity=0.189 Sum_probs=183.4
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|++++|++. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 8899999999743 49999999999999999999999999999999999999999999999988876666667778999
Q ss_pred EcCCCcc--C-------ccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 323 IPQDPTM--F-------EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 323 v~Q~~~l--f-------~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
++|++.+ + ..|+++|+.+.. ..++++.++++.+++.+..++.+ ..||||||||++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la~a 149 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQFGITALLDRRF-----------KYLSTGETRKTLLCQA 149 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHcCCHhhhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 9998753 2 348889886532 23467888899998876554433 4579999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|+.+|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 999999999999999999999999999998764 46899999999999887 999999999999999999988753
No 284
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=8.6e-42 Score=335.12 Aligned_cols=225 Identities=26% Similarity=0.427 Sum_probs=192.6
Q ss_pred CccEEEEEEEEEECCC---------CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 011281 240 QGEVDIHGLQVRYAPH---------LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS 310 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~---------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~ 310 (489)
..-++.+||.+.|+-. ...+++++||++++||.++|||+||||||||-.+|+|+.+++ |+|.++|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 3468999999999632 124799999999999999999999999999999999999876 999999999999
Q ss_pred CChHH---hhccceEEcCCCc-cC--ccchhhhcC----CCC-CC----cHHHHHHHHHHcCCcHHH-Hhccccccchhh
Q 011281 311 IGLHD---LRSRLSIIPQDPT-MF--EGSVHNNLD----PLE-EY----ADEEIWEALDKCQLGNEV-RKNEGKLESRVT 374 (489)
Q Consensus 311 ~~~~~---~r~~i~~v~Q~~~-lf--~~ti~~Ni~----~~~-~~----~~~~~~~~~~~~~l~~~i-~~l~~gldt~vg 374 (489)
++.+. +|+.+-+|+|||+ -+ ..||.+-|. ... .. -++++.+|++.+|++... .+.|+
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh------- 425 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPH------- 425 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCc-------
Confidence 88765 6789999999998 23 247766553 221 22 256789999999998765 34454
Q ss_pred cCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEe
Q 011281 375 ENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLS 451 (489)
Q Consensus 375 e~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~ 451 (489)
.+|||||||||||||+.-+|++++||||||+||...+.+|.+.++++. .+-+-++|||++..++. ||+|+||+
T Consensus 426 ----EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 426 ----EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred ----ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 459999999999999999999999999999999999999999998754 46799999999999998 99999999
Q ss_pred CCEEEEecChhHHhhcCCChHHHHH
Q 011281 452 YGLIEEFDSPTRLLENKSSSFAQLV 476 (489)
Q Consensus 452 ~G~i~~~g~~~el~~~~~~~~~~l~ 476 (489)
+|+|||+|+.+++++++...|.+-+
T Consensus 502 ~GkiVE~G~~~~if~~P~~~YT~~L 526 (534)
T COG4172 502 DGKIVEQGPTEAVFANPQHEYTRAL 526 (534)
T ss_pred CCEEeeeCCHHHHhcCCCcHHHHHH
Confidence 9999999999999999888886544
No 285
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.4e-42 Score=322.75 Aligned_cols=193 Identities=20% Similarity=0.239 Sum_probs=165.6
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ....++++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 689999999975 359999999999999999999999999999999999999999999999998864 34567889999
Q ss_pred EcCCCccCc-cchhhhcCCCC--CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC
Q 011281 323 IPQDPTMFE-GSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 399 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ 399 (489)
++|++.++. .|+++|+.+.. ...+.++.++++..++.+..+. + ...||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDY-------P----CGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhC-------C----hhhcCHHHHHHHHHHHHHhcCCC
Confidence 999999875 69999997642 1224467778888777554332 2 23589999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEE
Q 011281 400 VLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLL 449 (489)
Q Consensus 400 illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~ 449 (489)
++||||||++||+.+.+.+.+.|.+.. .+.|+|++||+.+.+..||.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999998753 57899999999999999997654
No 286
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.1e-42 Score=368.30 Aligned_cols=219 Identities=25% Similarity=0.401 Sum_probs=183.6
Q ss_pred cEEEEEEEEEECC---------CCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC
Q 011281 242 EVDIHGLQVRYAP---------HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG 312 (489)
Q Consensus 242 ~i~~~~v~~~y~~---------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~ 312 (489)
.++++|+++.|+. ....+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 5899999999962 12358999999999999999999999999999999999984 8999999999987765
Q ss_pred hHH---hhccceEEcCCC--ccCc-cchhhhcCCCC-----CCc----HHHHHHHHHHcCCc-HHHHhccccccchhhcC
Q 011281 313 LHD---LRSRLSIIPQDP--TMFE-GSVHNNLDPLE-----EYA----DEEIWEALDKCQLG-NEVRKNEGKLESRVTEN 376 (489)
Q Consensus 313 ~~~---~r~~i~~v~Q~~--~lf~-~ti~~Ni~~~~-----~~~----~~~~~~~~~~~~l~-~~i~~l~~gldt~vge~ 376 (489)
... +|+.++|++|++ .+|+ .|++||+.++. ... ++++.++++.+++. +...+.
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----------- 422 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY----------- 422 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC-----------
Confidence 433 467899999998 3666 49999996521 111 24567788888875 333332
Q ss_pred CCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCC
Q 011281 377 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYG 453 (489)
Q Consensus 377 G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G 453 (489)
..+||||||||++|||||+.+|++|||||||++||+.+.+.+++.|+++. .++|+|+|||+++.+.. ||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 34689999999999999999999999999999999999999999998764 37899999999999876 9999999999
Q ss_pred EEEEecChhHHhhcCCChH
Q 011281 454 LIEEFDSPTRLLENKSSSF 472 (489)
Q Consensus 454 ~i~~~g~~~el~~~~~~~~ 472 (489)
+|++.|+++++.+.+...|
T Consensus 503 ~i~~~~~~~~~~~~~~~~~ 521 (529)
T PRK15134 503 EVVEQGDCERVFAAPQQEY 521 (529)
T ss_pred EEEEEcCHHHHhcCCCChH
Confidence 9999999999987544344
No 287
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-42 Score=306.93 Aligned_cols=217 Identities=28% Similarity=0.406 Sum_probs=189.0
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC----------C
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----------I 311 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----------~ 311 (489)
.++++|+..+|+.. .+|++|||+.++|+.+.|+|.|||||||+++||.=+-.|+.|.|.++|.+++- .
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 58899999999765 48999999999999999999999999999999999999999999999998742 1
Q ss_pred C---hHHhhccceEEcCCCccCc-cchhhhcCCCC--------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCC
Q 011281 312 G---LHDLRSRLSIIPQDPTMFE-GSVHNNLDPLE--------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 379 (489)
Q Consensus 312 ~---~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~--------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~ 379 (489)
+ .+.+|.+.++|+|+..|.+ .|+.||+.-.+ ....++.+..+.++|+.+-.+..| ..
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~~ 152 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------AH 152 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------cc
Confidence 2 3457889999999999986 59999985321 112345667788899888766555 45
Q ss_pred CCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEE
Q 011281 380 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 457 (489)
Q Consensus 380 LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 457 (489)
|||||+||++|||||.-+|+++++|||||+|||+.--.+.+.+.++. +|+|+++|||.+.+.++ +.+|+.|.+|.|-|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 79999999999999999999999999999999999999999998765 68999999999999998 89999999999999
Q ss_pred ecChhHHhhcCCCh
Q 011281 458 FDSPTRLLENKSSS 471 (489)
Q Consensus 458 ~g~~~el~~~~~~~ 471 (489)
+|+++++..++.+.
T Consensus 233 ~G~P~qvf~nP~S~ 246 (256)
T COG4598 233 EGPPEQVFGNPQSP 246 (256)
T ss_pred cCChHHHhcCCCCH
Confidence 99999999886543
No 288
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.8e-41 Score=364.64 Aligned_cols=219 Identities=23% Similarity=0.380 Sum_probs=181.9
Q ss_pred cEEEEEEEEEECCC--CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCCChH
Q 011281 242 EVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIGLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 314 (489)
.++++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999642 23599999999999999999999999999999999999987 799999999999877644
Q ss_pred H---hh-ccceEEcCCCc--cCc-cchhhhcCCC----CCC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCC
Q 011281 315 D---LR-SRLSIIPQDPT--MFE-GSVHNNLDPL----EEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 379 (489)
Q Consensus 315 ~---~r-~~i~~v~Q~~~--lf~-~ti~~Ni~~~----~~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~ 379 (489)
. +| +.++|++|++. +++ .|+++|+.+. ... ..+++.++++.+++.+... .......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3 33 57999999985 444 4888887521 111 2356788899988865221 01222356
Q ss_pred CCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEE
Q 011281 380 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIE 456 (489)
Q Consensus 380 LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 456 (489)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||||++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 89999999999999999999999999999999999999999998764 37899999999999876 9999999999999
Q ss_pred EecChhHHhhcC
Q 011281 457 EFDSPTRLLENK 468 (489)
Q Consensus 457 ~~g~~~el~~~~ 468 (489)
+.|+++++...+
T Consensus 237 ~~g~~~~~~~~~ 248 (529)
T PRK15134 237 EQNRAATLFSAP 248 (529)
T ss_pred EeCCHHHHhhCC
Confidence 999999997643
No 289
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-42 Score=363.81 Aligned_cols=208 Identities=19% Similarity=0.291 Sum_probs=176.1
Q ss_pred EEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh-HHhhccceEE
Q 011281 245 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRLSII 323 (489)
Q Consensus 245 ~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v 323 (489)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +.+++.++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999964 359999999999999999999999999999999999999999999999999876554 3456789999
Q ss_pred cCCCccCc-cchhhhcCCCC----C--CcH----HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 324 PQDPTMFE-GSVHNNLDPLE----E--YAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 324 ~Q~~~lf~-~ti~~Ni~~~~----~--~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
+|++.+|. .|++||+.++. . .+. +++.++++.+++.+.. .....+||||||||++|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDP-----------RAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCc-----------cCchhhCCHHHHHHHHHHH
Confidence 99998776 49999997632 1 121 2455666666654332 2334568999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++.
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999999998764 57899999999999876 9999999999999999987763
No 290
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=362.97 Aligned_cols=207 Identities=22% Similarity=0.320 Sum_probs=176.8
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh-HHhhccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 320 (489)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.|
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 359999999999999999999999999999999999999999999999999875543 3467889
Q ss_pred eEEcCCCccCcc-chhhhcCCCC-----C-Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLE-----E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~-----~-~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
+||+|++.+|+. |+++|+.++. . .. .+++.++++.+++.+.. + .....||||||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSgGq~qrv~ 150 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP-------D----TPLKYLSIGQRQMVE 150 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCc-------C----CchhhCCHHHHHHHH
Confidence 999999998875 9999997632 1 11 23566777777765332 2 223468999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecCh
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 461 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 461 (489)
|||||+.+|+++||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||||++|++|+|+..++.
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998764 47899999999999876 999999999999876653
No 291
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-41 Score=323.41 Aligned_cols=195 Identities=23% Similarity=0.262 Sum_probs=166.7
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.++++|++++|++. .+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 58999999999643 589999999999999999999999999999999999999999999999988652 3456799
Q ss_pred EEcCCCccCcc-chhhhcCCC----CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 322 IIPQDPTMFEG-SVHNNLDPL----EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~----~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
|++|++.+|+. |++||+.+. ....++.+.++++..++.+.. ++. ...||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE-------DTL----VRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhc-------cCC----hhhCCHHHHHHHHHHHHHhc
Confidence 99999999886 999998653 112234566777777765443 222 34689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeC
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSY 452 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~ 452 (489)
+|+++||||||++||+++.+.+.+.+.+.. +++|+|++||+++.+.. ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998653 57899999999999976 999999864
No 292
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=370.84 Aligned_cols=224 Identities=23% Similarity=0.329 Sum_probs=182.9
Q ss_pred ccEEEEEEEEEECCC--CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC---------
Q 011281 241 GEVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--------- 309 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--------- 309 (489)
..|+++|+++.|+.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 359999999999642 235999999999999999999999999999999999999999999999998552
Q ss_pred -CCChH---Hhh-ccceEEcCCC--ccCc-cchhhhcCCC----CCCc----HHHHHHHHHHcCCcHHHHhccccccchh
Q 011281 310 -SIGLH---DLR-SRLSIIPQDP--TMFE-GSVHNNLDPL----EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRV 373 (489)
Q Consensus 310 -~~~~~---~~r-~~i~~v~Q~~--~lf~-~ti~~Ni~~~----~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~v 373 (489)
..+.. .+| +.|+||+|+| .+++ .|++||+.+. ...+ .+++.++++.+|+.+. +...
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 12222 233 4799999998 5666 4999999652 1122 2467778888887431 0112
Q ss_pred hcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEecCchhhhh-cCEEEEE
Q 011281 374 TENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLL 450 (489)
Q Consensus 374 ge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l 450 (489)
.....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++. + ++|+|+|||+++.+.. ||||++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 23345689999999999999999999999999999999999999999998864 3 7899999999999876 9999999
Q ss_pred eCCEEEEecChhHHhhcCCChH
Q 011281 451 SYGLIEEFDSPTRLLENKSSSF 472 (489)
Q Consensus 451 ~~G~i~~~g~~~el~~~~~~~~ 472 (489)
++|+|++.|+++++...+...|
T Consensus 243 ~~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 243 YQGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred eCCeecccCCHHHhhcCCCChh
Confidence 9999999999999986544344
No 293
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.3e-41 Score=361.66 Aligned_cols=210 Identities=23% Similarity=0.322 Sum_probs=177.8
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEeCCCCChHH-hhcc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDISSIGLHD-LRSR 319 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~r~~ 319 (489)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++.
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 689999999964 3589999999999999999999999999999999999987 7999999999998776544 4567
Q ss_pred ceEEcCCCccCcc-chhhhcCCCCC-------Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 320 LSIIPQDPTMFEG-SVHNNLDPLEE-------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 320 i~~v~Q~~~lf~~-ti~~Ni~~~~~-------~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
++||+|++.+|+. |++||+.+... .. .+++.++++.+++.+... +.+ ...||||||||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~----~~~LSgG~~qr 149 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV------TRP----VGDYGGGQQQL 149 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcc------cCc----hhhCCHHHHHH
Confidence 9999999988875 99999976321 11 234566777777644221 122 34589999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++..|+.+++
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999999998754 47899999999999886 999999999999999987654
No 294
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.4e-41 Score=319.51 Aligned_cols=193 Identities=26% Similarity=0.324 Sum_probs=166.9
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++||++.|++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . .+++.++|
T Consensus 3 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHY 77 (207)
T ss_pred EEEEeEEEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEE
Confidence 7899999999753 58999999999999999999999999999999999999999999999998752 2 27888999
Q ss_pred EcCCCccC-ccchhhhcCCCC---CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 323 IPQDPTMF-EGSVHNNLDPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 323 v~Q~~~lf-~~ti~~Ni~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
++|++.++ ..|+++|+.+.. ...++++.++++.+++.++.+..+ ..||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPF-----------GYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCCh-----------hhcCHHHHHHHHHHHHHhcCC
Confidence 99988776 469999986531 234566888999999876543222 358999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEecCchhhhhcCEEEEEeC
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSVIDSDMVLLLSY 452 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~i~~l~~ 452 (489)
+++||||||++||+.+.+.+.+.|.+. .+++|+|++||+++.+.. |+++.++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999875 357899999999999998 99988754
No 295
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.6e-41 Score=318.11 Aligned_cols=192 Identities=22% Similarity=0.303 Sum_probs=163.4
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|+++.|++. .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGER--MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 4689999999753 5899999999999999999999999999999999999999999999999987764 356788999
Q ss_pred EcCCCccCc-cchhhhcCCCC---CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 323 IPQDPTMFE-GSVHNNLDPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
++|++.+|+ .|+++|+.+.. ...++++.++++.+++.++.+..+ .+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA-----------AQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh-----------hhcCHHHHHHHHHHHHHhcCC
Confidence 999999886 59999996531 112446788999999877654332 468999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEecCchhhhhcCEEEE
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSVIDSDMVLL 449 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~i~~ 449 (489)
+++||||||++||+.+.+.+.+.|.++ .++.|+|++||+...+. |++++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 999999999999999999999999875 35789999999985443 466554
No 296
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.8e-41 Score=297.77 Aligned_cols=205 Identities=24% Similarity=0.306 Sum_probs=175.8
Q ss_pred EEEEEEEEEECCC--CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---hh
Q 011281 243 VDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LR 317 (489)
Q Consensus 243 i~~~~v~~~y~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r 317 (489)
|++++++...+.. .-.+|++|+|.|++||.++||||||||||||+-+++|+-+|++|+|.+.|+++..++.+. +|
T Consensus 7 i~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R 86 (228)
T COG4181 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALR 86 (228)
T ss_pred eehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhh
Confidence 6777777666533 234899999999999999999999999999999999999999999999999999988553 45
Q ss_pred -ccceEEcCCCccCc-cchhhhcCCC----C---CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH
Q 011281 318 -SRLSIIPQDPTMFE-GSVHNNLDPL----E---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388 (489)
Q Consensus 318 -~~i~~v~Q~~~lf~-~ti~~Ni~~~----~---~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl 388 (489)
+++|+|+|..+|.+ .|-.||+... . ....+...+.++++||.+-+...|. +|||||+||+
T Consensus 87 ~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~-----------qLSGGEQQRV 155 (228)
T COG4181 87 ARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPA-----------QLSGGEQQRV 155 (228)
T ss_pred ccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCcc-----------ccCchHHHHH
Confidence 57999999999876 5999998652 1 1123446778888888777666664 5699999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 011281 389 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVIDSDMVLLLSYGLIEEF 458 (489)
Q Consensus 389 ~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~--~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 458 (489)
+||||+...|+||+-||||-+||.+|.++|.+.+..+ ..|.|.|+|||+.....+|||++-|.+|+|++.
T Consensus 156 AiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 156 ALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 9999999999999999999999999999999998654 357899999999999999999999999999863
No 297
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.1e-41 Score=363.48 Aligned_cols=214 Identities=25% Similarity=0.412 Sum_probs=178.5
Q ss_pred cEEEEEEEEEECC---CCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC-CEe---CCCCC--
Q 011281 242 EVDIHGLQVRYAP---HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID-GID---ISSIG-- 312 (489)
Q Consensus 242 ~i~~~~v~~~y~~---~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~-g~~---~~~~~-- 312 (489)
.++++||+++|++ ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 22359999999999999999999999999999999999999999999996 643 33332
Q ss_pred -hHHhhccceEEcCCCccCcc-chhhhcCCCC--CC----cHHHHHHHHHHcCCcH-----HHHhccccccchhhcCCCC
Q 011281 313 -LHDLRSRLSIIPQDPTMFEG-SVHNNLDPLE--EY----ADEEIWEALDKCQLGN-----EVRKNEGKLESRVTENGEN 379 (489)
Q Consensus 313 -~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~--~~----~~~~~~~~~~~~~l~~-----~i~~l~~gldt~vge~G~~ 379 (489)
...+|+.++|++|++.+|+. |++||+.+.. .. .++++.++++.+++.+ +.++ ....
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------~~~~ 427 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDK-----------YPDE 427 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhC-----------Chhh
Confidence 22456789999999988875 9999996421 11 1245677888888753 2222 2345
Q ss_pred CCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEE
Q 011281 380 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIE 456 (489)
Q Consensus 380 LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 456 (489)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++. .+.|+|+|||+++.+.. ||||++|++|+++
T Consensus 428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 89999999999999999999999999999999999999999998764 37899999999999886 9999999999999
Q ss_pred EecChhHHhh
Q 011281 457 EFDSPTRLLE 466 (489)
Q Consensus 457 ~~g~~~el~~ 466 (489)
+.|+++++.+
T Consensus 508 ~~g~~~~~~~ 517 (520)
T TIGR03269 508 KIGDPEEIVE 517 (520)
T ss_pred EECCHHHHHh
Confidence 9999988765
No 298
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-41 Score=346.41 Aligned_cols=206 Identities=25% Similarity=0.360 Sum_probs=181.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhh-ccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR-SRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~i 320 (489)
-++++|++++|++- .+|+|+||++.+||++|++|+||||||||+|+|+|.|+|++|+|.+||+++.-.++.+-+ .-|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 48899999999875 599999999999999999999999999999999999999999999999999888877655 459
Q ss_pred eEEcCCCccCcc-chhhhcCCCCCC-------c----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLEEY-------A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~~~-------~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl 388 (489)
+.|.||..|++. ||.|||.+++.. + .++..++++..++. ...+++|++ ||.||||-+
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~~~~~v~~----LsiaqrQ~V 154 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-------IDPDTLVGD----LSIAQRQMV 154 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-------CChhhhhhh----CCHHHHHHH
Confidence 999999999976 999999776432 2 23445566666654 125667654 999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 011281 389 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 389 ~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 460 (489)
+||||+..+++|+|||||||+|+....+.+++.+++++ +|.++|+||||++.+.. ||||.||++|+.+..++
T Consensus 155 eIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 155 EIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999999999999999998876 68999999999999987 99999999999998777
No 299
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3.6e-41 Score=323.19 Aligned_cols=198 Identities=22% Similarity=0.307 Sum_probs=163.7
Q ss_pred EEEEEEEEEECC----C-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC--CE--eCCCCCh
Q 011281 243 VDIHGLQVRYAP----H-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID--GI--DISSIGL 313 (489)
Q Consensus 243 i~~~~v~~~y~~----~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~--g~--~~~~~~~ 313 (489)
|+++|++++|+. . .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 689999999963 1 2358999999999999999999999999999999999999999999998 42 5655554
Q ss_pred HH---h-hccceEEcCCCccCcc-chhhhcCCC---CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCC
Q 011281 314 HD---L-RSRLSIIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 381 (489)
Q Consensus 314 ~~---~-r~~i~~v~Q~~~lf~~-ti~~Ni~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LS 381 (489)
.. + ++.++|++|++.+|+. |++||+.+. .... .+++.++++..++.+.... ....+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWH----------LPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhh----------CCcccCC
Confidence 43 2 4579999999998875 999998642 1121 3456777888777654321 2255799
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEE
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLL 450 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l 450 (489)
||||||++|||||+++|+++||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998764 47899999999998874 9999876
No 300
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-41 Score=305.00 Aligned_cols=219 Identities=25% Similarity=0.373 Sum_probs=189.9
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+.+|+|++..+. .+++++||++++||..+|+||||||||||+|.|+|.+.|++|++.++|.++..+...++-+.-+.
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 6789999988654 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcc-CccchhhhcCCCC-------CCcHHH--HHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 323 IPQDPTM-FEGSVHNNLDPLE-------EYADEE--IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 323 v~Q~~~l-f~~ti~~Ni~~~~-------~~~~~~--~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
+||+..+ |+-|++|-+.++. +..+++ ..+++.++++..+..+. =..|||||+||+.+||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----------y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD-----------YRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc-----------hhhcCchHHHHHHHHH
Confidence 9999987 8999999998752 112333 57899999988776542 2458999999999999
Q ss_pred HhccC------CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 393 VLLKK------SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 393 all~~------~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
.|.+- +++|+||||||+||..-+..+++..+++. .+..|+.|-|+++.... ||||++|.+|+++..|++++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 99853 35899999999999999999999988865 57899999999998875 999999999999999999999
Q ss_pred hhcCCChHHHHH
Q 011281 465 LENKSSSFAQLV 476 (489)
Q Consensus 465 ~~~~~~~~~~l~ 476 (489)
+.. ......|
T Consensus 229 lt~--Etl~~vy 238 (259)
T COG4559 229 LTD--ETLERVY 238 (259)
T ss_pred cCH--HHHHHHh
Confidence 975 3444443
No 301
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-41 Score=359.84 Aligned_cols=213 Identities=22% Similarity=0.302 Sum_probs=177.3
Q ss_pred cEEEEEEEEEECC-CCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCceEEECCEeCCCCCh-HHhhc
Q 011281 242 EVDIHGLQVRYAP-HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-PTAGLIAIDGIDISSIGL-HDLRS 318 (489)
Q Consensus 242 ~i~~~~v~~~y~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-~~~G~i~~~g~~~~~~~~-~~~r~ 318 (489)
.|+++||++.|+. ....+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+. +.+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5899999999953 12358999999999999999999999999999999999998 599999999999865543 34567
Q ss_pred cceEEcCCC---ccCc-cchhhhcCCCC--C------Cc----HHHHHHHHHHcCCc-HHHHhccccccchhhcCCCCCC
Q 011281 319 RLSIIPQDP---TMFE-GSVHNNLDPLE--E------YA----DEEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWS 381 (489)
Q Consensus 319 ~i~~v~Q~~---~lf~-~ti~~Ni~~~~--~------~~----~~~~~~~~~~~~l~-~~i~~l~~gldt~vge~G~~LS 381 (489)
.++|++|++ .+|+ .|+.||+.++. . .+ .+++.++++.+++. +..+ .....||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS 407 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPE-----------LAIARLS 407 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcc-----------cccccCC
Confidence 899999996 3665 59999997531 1 11 13466677777763 2222 2234689
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
||||||++||||++.+|++|||||||++||+.+.+.+++.|.++. +++|+|+|||+++.+.. |||+++|++|+|+..|
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999998764 57899999999999876 9999999999999999
Q ss_pred ChhHHh
Q 011281 460 SPTRLL 465 (489)
Q Consensus 460 ~~~el~ 465 (489)
+.+++.
T Consensus 488 ~~~~~~ 493 (506)
T PRK13549 488 INHNLT 493 (506)
T ss_pred ccccCC
Confidence 888763
No 302
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-40 Score=325.53 Aligned_cols=202 Identities=19% Similarity=0.271 Sum_probs=168.4
Q ss_pred cEEEEEEEEEECC------------------CCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE
Q 011281 242 EVDIHGLQVRYAP------------------HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 303 (489)
Q Consensus 242 ~i~~~~v~~~y~~------------------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~ 303 (489)
+++++||+..|.. ...++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 5778888776643 1234899999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCChHHhhccceEEcCCCccCc-cchhhhcCCC---CCCcHHH----HHHHHHHcCCcHHHHhccccccchhhc
Q 011281 304 DGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHNNLDPL---EEYADEE----IWEALDKCQLGNEVRKNEGKLESRVTE 375 (489)
Q Consensus 304 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~---~~~~~~~----~~~~~~~~~l~~~i~~l~~gldt~vge 375 (489)
+|. +++++|++.+++ .|+++|+.+. ...+.++ +.++++..++.+++. .
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIY-----------Q 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------C
Confidence 984 456788877765 4999999642 1223333 344566666655443 3
Q ss_pred CCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCC
Q 011281 376 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYG 453 (489)
Q Consensus 376 ~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G 453 (489)
....|||||+||++||||++++|++|||||||++||+.+.+.+.+.+.++. .++|+|++||+++.+.. ||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 456789999999999999999999999999999999999999999998754 47899999999999876 9999999999
Q ss_pred EEEEecChhHHhhc
Q 011281 454 LIEEFDSPTRLLEN 467 (489)
Q Consensus 454 ~i~~~g~~~el~~~ 467 (489)
++++.|+++++.+.
T Consensus 220 ~i~~~g~~~~~~~~ 233 (264)
T PRK13546 220 KLKDYGELDDVLPK 233 (264)
T ss_pred EEEEeCCHHHHHHH
Confidence 99999999999876
No 303
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=5.2e-41 Score=321.83 Aligned_cols=186 Identities=24% Similarity=0.365 Sum_probs=160.1
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCcc---CccchhhhcCCC
Q 011281 265 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM---FEGSVHNNLDPL 341 (489)
Q Consensus 265 l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l---f~~ti~~Ni~~~ 341 (489)
|++++||+++|+||||||||||+++|+|+++|++|+|.+||.++. ..++.++|++|++.+ |+.|+++|+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 346789999999876 346999998643
Q ss_pred C---------C--CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 011281 342 E---------E--YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASV 410 (489)
Q Consensus 342 ~---------~--~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~l 410 (489)
. . ..++++.++++.+++.++.+..+ ..||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----------GELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 1 1 12346788899988876554322 358999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 411 DTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 411 D~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|+.+.+.+.+.|.+.. +++|+|++||+++.+.. ||+|+++ +|++++.|+++++.++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999998764 47899999999998876 9999999 8999999999998764
No 304
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-41 Score=293.37 Aligned_cols=222 Identities=23% Similarity=0.353 Sum_probs=189.8
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeC--CCCC----hHH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI--SSIG----LHD 315 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~--~~~~----~~~ 315 (489)
+|.++|+.|.|+.. .+|.||+|+-+.||.+.+.||||+|||||++.|.=+--|.+|+..|.|... +... ...
T Consensus 2 sirv~~in~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEcccccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 48899999999754 589999999999999999999999999999999999999999999987643 2222 346
Q ss_pred hhccceEEcCCCccCc-cchhhhcCCC--------CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 316 LRSRLSIIPQDPTMFE-GSVHNNLDPL--------EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 316 ~r~~i~~v~Q~~~lf~-~ti~~Ni~~~--------~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
+|+.+|+|+|..++.+ -|+-||+.-. ++....+..+.+++..|.++.++.|- .|||||+|
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl-----------hlsggqqq 148 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL-----------HLSGGQQQ 148 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCce-----------ecccchhh
Confidence 8999999999999986 4999998432 22334567788999999999988874 46999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
|++|||||+.+|++|++||||++|||+-..++.+.|+++. .|.|-++|||..+..+. +.+++.|++|+|+|.|+++-.
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 9999999999999999999999999999999999998875 58899999999999987 999999999999999998876
Q ss_pred hhcCCChHHHHH
Q 011281 465 LENKSSSFAQLV 476 (489)
Q Consensus 465 ~~~~~~~~~~l~ 476 (489)
-..+...|++++
T Consensus 229 t~p~te~f~~yl 240 (242)
T COG4161 229 TEPQTEAFKNYL 240 (242)
T ss_pred cCccHHHHHHHh
Confidence 544334455443
No 305
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.3e-41 Score=360.41 Aligned_cols=211 Identities=27% Similarity=0.431 Sum_probs=175.8
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEEC----------------
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTAGLIAID---------------- 304 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~--~~~~G~i~~~---------------- 304 (489)
|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 478999999964 35999999999999999999999999999999999996 7999999997
Q ss_pred -------CEeCC-------CCC---hHHhhccceEEcCC-CccCc-cchhhhcCCC---CCCc----HHHHHHHHHHcCC
Q 011281 305 -------GIDIS-------SIG---LHDLRSRLSIIPQD-PTMFE-GSVHNNLDPL---EEYA----DEEIWEALDKCQL 358 (489)
Q Consensus 305 -------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~lf~-~ti~~Ni~~~---~~~~----~~~~~~~~~~~~l 358 (489)
|.++. ..+ ...+|+.++|++|+ +.+|+ .|+++|+.+. ...+ ++++.++++.+++
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 32221 111 12457789999998 56776 4999999652 1122 3457778888888
Q ss_pred cHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEec
Q 011281 359 GNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAH 436 (489)
Q Consensus 359 ~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH 436 (489)
.+..++. ..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++. .++|||+|||
T Consensus 159 ~~~~~~~-----------~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 159 SHRITHI-----------ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred hhhhhcC-----------cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 6655433 34689999999999999999999999999999999999999999998763 3789999999
Q ss_pred Cchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 437 RITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 437 ~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
+++.+.. ||+|++|++|+++..|+++++..
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 9999876 99999999999999999988865
No 306
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2e-40 Score=362.02 Aligned_cols=198 Identities=24% Similarity=0.292 Sum_probs=170.6
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CceEEECCEeCCCCChHHhhccceEEcCCCccCcc-c
Q 011281 257 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT--AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-S 333 (489)
Q Consensus 257 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~--~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-t 333 (489)
+.+|+|+|+++++||++||+||||||||||+++|+|+.+|. +|+|.+||+++. ...++.++||+|++.+|+. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 35899999999999999999999999999999999999885 899999999874 2456679999999999964 9
Q ss_pred hhhhcCCC------CCCcH----HHHHHHHHHcCCcHHHHhccccccchhhcC-CCCCCchHHHHHHHHHHhccCCCEEE
Q 011281 334 VHNNLDPL------EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTEN-GENWSMGQRQLVCLARVLLKKSKVLV 402 (489)
Q Consensus 334 i~~Ni~~~------~~~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~-G~~LSgGq~Qrl~laRall~~~~ill 402 (489)
++||+.+. ...++ +++.+.++..|+.+ ..||.+|+. ...||||||||++|||||+++|+|++
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 99999753 12233 23556666666644 458888754 67899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchh-h-hhcCEEEEEeCCEEEEecChhHHh
Q 011281 403 LDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS-V-IDSDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 403 lDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|||||++||+.++..+.+.|+++. +++|+|+++|+++. + ..+|+|++|++|+++..|+++++.
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 999999999999999999998765 58999999999984 4 459999999999999999999986
No 307
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-41 Score=358.14 Aligned_cols=207 Identities=18% Similarity=0.309 Sum_probs=172.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh-HHhhccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 320 (489)
.++++|+++.|. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.+
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 599999998763 28999999999999999999999999999999999999999999999999865543 3467789
Q ss_pred eEEcCCC---ccCcc-chhhhcCCCCC------------Cc----HHHHHHHHHHcCCc-HHHHhccccccchhhcCCCC
Q 011281 321 SIIPQDP---TMFEG-SVHNNLDPLEE------------YA----DEEIWEALDKCQLG-NEVRKNEGKLESRVTENGEN 379 (489)
Q Consensus 321 ~~v~Q~~---~lf~~-ti~~Ni~~~~~------------~~----~~~~~~~~~~~~l~-~~i~~l~~gldt~vge~G~~ 379 (489)
+|++|++ .+|+. |+++|+.+... .. .+++.++++..++. +.. +.+ ...
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~~ 409 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV-------NQN----ITE 409 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCc-------cCc----ccc
Confidence 9999984 57764 99999976321 01 12356667777664 332 222 345
Q ss_pred CCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEE
Q 011281 380 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 457 (489)
Q Consensus 380 LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 457 (489)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.+.. ||||++|++|++++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 89999999999999999999999999999999999999999998753 57899999999998876 99999999999999
Q ss_pred ecChhH
Q 011281 458 FDSPTR 463 (489)
Q Consensus 458 ~g~~~e 463 (489)
.++..+
T Consensus 490 ~~~~~~ 495 (510)
T PRK09700 490 ILTNRD 495 (510)
T ss_pred EecCcc
Confidence 887633
No 308
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=363.47 Aligned_cols=213 Identities=24% Similarity=0.342 Sum_probs=186.0
Q ss_pred cEEEEEEEEEECCC--CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh---
Q 011281 242 EVDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL--- 316 (489)
Q Consensus 242 ~i~~~~v~~~y~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~--- 316 (489)
.++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999642 2358999999999999999999999999999999999999999999999999998876654
Q ss_pred -hccceEEcCCCccCcc-chhhhcCCCC---CC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 317 -RSRLSIIPQDPTMFEG-SVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 317 -r~~i~~v~Q~~~lf~~-ti~~Ni~~~~---~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
++.++|++|++.+|+. |+.||+.+.. .. .+++..+.++.+++.++++..| ..|||||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----------~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP-----------SQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCc-----------ccCCHHHHHH
Confidence 5789999999999975 9999997521 11 1235666777777766654443 4689999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~ 465 (489)
++|||||+++|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..|||+++|++|+++++|+.+|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998764 478999999999999889999999999999999999886
No 309
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.6e-40 Score=389.58 Aligned_cols=216 Identities=24% Similarity=0.322 Sum_probs=190.2
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..|+++||++.|+++.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+.+
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 4699999999996433469999999999999999999999999999999999999999999999999864 456778899
Q ss_pred eEEcCCCccCcc-chhhhcCCC---CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
||+||++.+|+. |++||+.+. .... ++++.+.++.+++.+..++. ..+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~-----------~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEE-----------AQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999875 999999753 1111 34577888888886654433 3568999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 468 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~ 468 (489)
||+.+|+++|||||||+||+.+++.+.+.|++..+++|+|++||+++.+.. ||||++|++|+++..|+.++|.++-
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 999999999999999999999999999999988778999999999999986 9999999999999999999997653
No 310
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=7.4e-41 Score=312.93 Aligned_cols=172 Identities=27% Similarity=0.404 Sum_probs=147.5
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC--CChHHhhccceEEcCCC--ccCccc
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--IGLHDLRSRLSIIPQDP--TMFEGS 333 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~--~lf~~t 333 (489)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....+++.++|++|++ .+|..|
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 85 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAAD 85 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccccc
Confidence 58999999999999999999999999999999999999999999999999852 22345678899999998 477789
Q ss_pred hhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCC
Q 011281 334 VHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 406 (489)
Q Consensus 334 i~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEp 406 (489)
++||+.+.. ..+ .+++.++++.+++.++.++.+ ..||||||||++|||||+++|+++|||||
T Consensus 86 v~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 86 VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT-----------HCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999997631 122 245677888888876655433 46899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchh
Q 011281 407 TASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS 440 (489)
Q Consensus 407 ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~ 440 (489)
|++||+.+.+.+.+.|.+.. +++|+|+|||+++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999999998764 47899999999865
No 311
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.6e-40 Score=318.64 Aligned_cols=192 Identities=26% Similarity=0.326 Sum_probs=158.0
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
+.++|+++.|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 23 l~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~----- 90 (224)
T cd03220 23 LGILGRKGEVGEF--WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----G----- 90 (224)
T ss_pred hhhhhhhhhcCCe--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----c-----
Confidence 6788899999653 599999999999999999999999999999999999999999999999876321 1
Q ss_pred EcCCCcc-CccchhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTM-FEGSVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~l-f~~ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
+...+ +..|++||+.+.. ..+ ++++.++++..++.+..+ +.+ ..||||||||++||||+
T Consensus 91 --~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LSgG~~qrv~laral 157 (224)
T cd03220 91 --LGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID-------LPV----KTYSSGMKARLAFAIAT 157 (224)
T ss_pred --ccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-------CCh----hhCCHHHHHHHHHHHHH
Confidence 11222 3469999986531 112 234566777777655443 232 45899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
+++|+++||||||++||+.+.+.+.+.+.+.. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999998764 46899999999999875 9999999999998765
No 312
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3e-40 Score=310.10 Aligned_cols=188 Identities=23% Similarity=0.367 Sum_probs=159.9
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|++++|++ +.++ ++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 689999999964 3344 599999999999999999999999999999999999999999999886542 346899
Q ss_pred EcCCCcc-CccchhhhcCCCCC--CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC
Q 011281 323 IPQDPTM-FEGSVHNNLDPLEE--YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 399 (489)
Q Consensus 323 v~Q~~~l-f~~ti~~Ni~~~~~--~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ 399 (489)
++|++.+ |..|++||+.+... ..++++.++++.+++.++..+ .+.+||||||||++||||++++|+
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDE-----------KCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhcc-----------ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999865 56799999976321 135667888888887665432 356789999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEecCchhhhhcCEEE
Q 011281 400 VLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSVIDSDMVL 448 (489)
Q Consensus 400 illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~i~ 448 (489)
++||||||++||+.+.+.+.+.+... .+++|+|++||+++.++.+|-|.
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999999743 45789999999999999998763
No 313
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-40 Score=339.75 Aligned_cols=203 Identities=21% Similarity=0.282 Sum_probs=170.6
Q ss_pred ccEEEEEEEEEECCCC-CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 241 GEVDIHGLQVRYAPHL-PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
..++++|++|.|++.. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~----------- 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA----------- 88 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-----------
Confidence 3589999999997642 3589999999999999999999999999999999999999999999999752
Q ss_pred ceEEcCCCccCc-cchhhhcCCC---CCCcH----HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 320 LSIIPQDPTMFE-GSVHNNLDPL---EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 320 i~~v~Q~~~lf~-~ti~~Ni~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
++.+.+.+++ .|++||+.+. ...+. +++.++++.+++.+++++. ...||||||||++||
T Consensus 89 --~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~-----------~~~LSGGQrQRVaLA 155 (549)
T PRK13545 89 --LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQP-----------VKTYSSGMKSRLGFA 155 (549)
T ss_pred --eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------cccCCHHHHHHHHHH
Confidence 1222344444 4999998652 12222 2355678888887665543 356899999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+.. ||++++|++|++++.|+++++..+
T Consensus 156 rAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 156 ISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99999999999999999999999999999998764 47899999999999876 999999999999999999999865
No 314
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.1e-40 Score=352.99 Aligned_cols=211 Identities=21% Similarity=0.282 Sum_probs=174.4
Q ss_pred cEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCCCCh-HHhhc
Q 011281 242 EVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAIDGIDISSIGL-HDLRS 318 (489)
Q Consensus 242 ~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-~~G~i~~~g~~~~~~~~-~~~r~ 318 (489)
.++++|++++|+++ ...+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 59999999999421 23589999999999999999999999999999999999995 89999999999865433 45678
Q ss_pred cceEEcCCC---ccCc-cchhhhcCCCC--------CCc----HHHHHHHHHHcCCcH-HHHhccccccchhhcCCCCCC
Q 011281 319 RLSIIPQDP---TMFE-GSVHNNLDPLE--------EYA----DEEIWEALDKCQLGN-EVRKNEGKLESRVTENGENWS 381 (489)
Q Consensus 319 ~i~~v~Q~~---~lf~-~ti~~Ni~~~~--------~~~----~~~~~~~~~~~~l~~-~i~~l~~gldt~vge~G~~LS 381 (489)
.++|++|++ .+|+ .|+++|+.+.. ... .+++.++++.+++.+ .. +.+ ...||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~~LS 405 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASP-------FLP----IGRLS 405 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCc-------cCc----cccCC
Confidence 899999996 4666 49999997631 011 234667777776632 22 222 34589
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
||||||++||||++.+|++|||||||++||+.+.+.+++.+..+. ++.|+|+|||+++.+.. ||++++|++|+++..+
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999988754 57899999999999886 9999999999999877
Q ss_pred ChhH
Q 011281 460 SPTR 463 (489)
Q Consensus 460 ~~~e 463 (489)
+.++
T Consensus 486 ~~~~ 489 (500)
T TIGR02633 486 VNHA 489 (500)
T ss_pred cccc
Confidence 6443
No 315
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-40 Score=352.70 Aligned_cols=199 Identities=24% Similarity=0.327 Sum_probs=167.7
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|
T Consensus 2 l~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 2 LSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred EEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 789999999964 35999999999999999999999999999999999999999999999872 35999
Q ss_pred EcCCCccCcc-chhhhcCCCCC---------------------------------------CcHHHHHHHHHHcCCcHHH
Q 011281 323 IPQDPTMFEG-SVHNNLDPLEE---------------------------------------YADEEIWEALDKCQLGNEV 362 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~i 362 (489)
++|++.+|.. |++||+.++.. ..++++.++++.+++.+..
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 148 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ 148 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence 9999988865 99999865310 0023445556666654322
Q ss_pred HhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhh
Q 011281 363 RKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 442 (489)
Q Consensus 363 ~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 442 (489)
. .....+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|.+ .+.|||+|||+++.+.
T Consensus 149 ~----------~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~ 216 (530)
T PRK15064 149 H----------YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLN 216 (530)
T ss_pred h----------cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHH
Confidence 1 122456899999999999999999999999999999999999999999875 4789999999999987
Q ss_pred h-cCEEEEEeCCEE-EEecChhHHhh
Q 011281 443 D-SDMVLLLSYGLI-EEFDSPTRLLE 466 (489)
Q Consensus 443 ~-~d~i~~l~~G~i-~~~g~~~el~~ 466 (489)
. ||+|++|++|++ +..|++++.++
T Consensus 217 ~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 217 SVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred hhcceEEEEeCCEEEEecCCHHHHHH
Confidence 6 999999999999 47999998875
No 316
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.7e-40 Score=384.29 Aligned_cols=215 Identities=16% Similarity=0.205 Sum_probs=188.3
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..|+++||+++|++....+++|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++.. +....|+.|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 4599999999997533469999999999999999999999999999999999999999999999999865 455678899
Q ss_pred eEEcCCCccCcc-chhhhcCCC---CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
||+||++.+++. |++||+.+. ...+ ++.+.++++.+++.++.++.+ ..||||||||++|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----------~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-----------GTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999998875 999999652 1222 234567888898877655544 347999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
||+.+|+|++|||||++||+.+++.+++.|++.. +|+|+|++||+++.+.. ||||++|++|+++..|+.+++.++
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999999998753 57899999999999987 999999999999999999999764
No 317
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=6.1e-40 Score=350.58 Aligned_cols=205 Identities=21% Similarity=0.337 Sum_probs=173.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH-Hhhccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i 320 (489)
.++++|+++ .+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+.+
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 589999984 279999999999999999999999999999999999999999999999998776543 457789
Q ss_pred eEEcCCC---ccCc-cchhhhcCCCC-----C----Cc----HHHHHHHHHHcCCc-HHHHhccccccchhhcCCCCCCc
Q 011281 321 SIIPQDP---TMFE-GSVHNNLDPLE-----E----YA----DEEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWSM 382 (489)
Q Consensus 321 ~~v~Q~~---~lf~-~ti~~Ni~~~~-----~----~~----~~~~~~~~~~~~l~-~~i~~l~~gldt~vge~G~~LSg 382 (489)
+||+|++ .+|. .|+++|+.+.. . .. ++++.++++.+++. +.. ......|||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSg 398 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM-----------EQAIGLLSG 398 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCc-----------cCchhhCCH
Confidence 9999997 3555 59999997521 0 11 23466677777663 222 223346899
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 011281 383 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 383 Gq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 460 (489)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.+.. ||+|++|++|+++..|+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998864 47899999999999876 99999999999999998
Q ss_pred hhHH
Q 011281 461 PTRL 464 (489)
Q Consensus 461 ~~el 464 (489)
.+++
T Consensus 479 ~~~~ 482 (501)
T PRK10762 479 REQA 482 (501)
T ss_pred cccC
Confidence 7765
No 318
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=8e-40 Score=330.25 Aligned_cols=185 Identities=26% Similarity=0.406 Sum_probs=160.4
Q ss_pred EECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCcc-chhhhcCCCC---CCc----H
Q 011281 275 IVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLE---EYA----D 346 (489)
Q Consensus 275 ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~---~~~----~ 346 (489)
|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|++|++.+|+. |+++|+.++. ..+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999976654 46789999999999975 9999997641 122 3
Q ss_pred HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 011281 347 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF 426 (489)
Q Consensus 347 ~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~ 426 (489)
+++.++++.+++.++.++.| .+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|++..
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~-----------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP-----------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh-----------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 45778888888877665544 4579999999999999999999999999999999999999999998764
Q ss_pred --CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChH
Q 011281 427 --SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 472 (489)
Q Consensus 427 --~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~~~ 472 (489)
.++|+|+|||+++.+.. ||||++|++|+|++.|+++++...+...|
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 37899999999998876 99999999999999999999987654444
No 319
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-40 Score=308.69 Aligned_cols=196 Identities=22% Similarity=0.316 Sum_probs=176.9
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC----CChHHhhccceEEcCCCccCc-cchhh
Q 011281 262 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----IGLHDLRSRLSIIPQDPTMFE-GSVHN 336 (489)
Q Consensus 262 ~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----~~~~~~r~~i~~v~Q~~~lf~-~ti~~ 336 (489)
+++|+.+...++||-|+||||||||+|+|+|+..|++|.|.+||.-+.+ +...--++.||||+||.-||+ .||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 5888888889999999999999999999999999999999999997743 444456889999999999997 59999
Q ss_pred hcCCCCC-CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 011281 337 NLDPLEE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 415 (489)
Q Consensus 337 Ni~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~ 415 (489)
|++|+.. ....++.+++...|+.+.+++.|.. ||||||||+||+|||+..|++|+||||.|+||-...
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~-----------LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGT-----------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCc-----------cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 9999854 4467899999999999999998865 599999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 011281 416 NLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 468 (489)
Q Consensus 416 ~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~ 468 (489)
++++-.+.++.+ +.-+++|||.++++.+ ||+|++|++|++...|+.+|++..+
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 999999987764 4579999999999887 9999999999999999999999764
No 320
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-40 Score=296.16 Aligned_cols=219 Identities=25% Similarity=0.370 Sum_probs=192.6
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++||+++|+.. .+++++|++|++|.+++++||||||||||+.+++|+.++++|+|.+||.++..++.+++.+.+++
T Consensus 2 I~i~nv~K~y~~~--~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCCE--EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 6789999999754 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccCc-cchhhhcCCCC-CC--------cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 323 IPQDPTMFE-GSVHNNLDPLE-EY--------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~~-~~--------~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
+-|+.++-. -||+|-+.|++ ++ +...+.+|++..+|.+.-++.- ..||||||||.-+|.
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----------d~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----------DELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH-----------Hhcccchhhhhhhhe
Confidence 999998765 49999998863 22 2345788898888876544321 247999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 469 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~ 469 (489)
.++++.+.++||||.++||-.-...+++.++++. -+||+++|-|+.+.+.. +|+|+-|++|+++.+|+++|++..
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~-- 226 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP-- 226 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH--
Confidence 9999999999999999999998889999998764 38999999999999986 899999999999999999999975
Q ss_pred ChHHHHH
Q 011281 470 SSFAQLV 476 (489)
Q Consensus 470 ~~~~~l~ 476 (489)
....+++
T Consensus 227 ~~L~eiy 233 (252)
T COG4604 227 EILSEIY 233 (252)
T ss_pred HHHHHHh
Confidence 3455554
No 321
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=348.12 Aligned_cols=207 Identities=21% Similarity=0.305 Sum_probs=173.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh-HHhhccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 320 (489)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...++.+
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 5899999842 38999999999999999999999999999999999999999999999998865433 3456789
Q ss_pred eEEcCCCc---cCc-cchhhhcCCCCC---------Cc----HHHHHHHHHHcCCc-HHHHhccccccchhhcCCCCCCc
Q 011281 321 SIIPQDPT---MFE-GSVHNNLDPLEE---------YA----DEEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWSM 382 (489)
Q Consensus 321 ~~v~Q~~~---lf~-~ti~~Ni~~~~~---------~~----~~~~~~~~~~~~l~-~~i~~l~~gldt~vge~G~~LSg 382 (489)
+|++|++. +|+ .|+.||+.++.. .. ++++.++++.+++. +.. +++ ...|||
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~~LSg 399 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR-------EQL----IMNLSG 399 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCc-------cCc----cccCCH
Confidence 99999973 665 699999876311 01 23456677777663 222 222 346899
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 011281 383 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 383 Gq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 460 (489)
|||||++||||++.+|++|||||||++||+.+.+.+++.|.++. .+.|+|+|||+++.+.. ||++++|++|+++..|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998764 47899999999999976 99999999999999998
Q ss_pred hhHHh
Q 011281 461 PTRLL 465 (489)
Q Consensus 461 ~~el~ 465 (489)
.+|..
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 87654
No 322
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=8.8e-40 Score=356.58 Aligned_cols=201 Identities=21% Similarity=0.280 Sum_probs=173.5
Q ss_pred CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCChHHhhccceEEcCCCccCcc
Q 011281 256 LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG 332 (489)
Q Consensus 256 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 332 (489)
.+++|+|+|+++++||.++|+||||||||||+++|+|..+|. +|+|.+||.+++ ...+|+.++||+|++.+++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 356999999999999999999999999999999999999885 899999999875 35678899999999999865
Q ss_pred -chhhhcCCCC------CCcH----HHHHHHHHHcCCcHHHHhccccccchhhcC--CCCCCchHHHHHHHHHHhccCCC
Q 011281 333 -SVHNNLDPLE------EYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTEN--GENWSMGQRQLVCLARVLLKKSK 399 (489)
Q Consensus 333 -ti~~Ni~~~~------~~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~--G~~LSgGq~Qrl~laRall~~~~ 399 (489)
||+||+.++. ..+. +++.+.++..++. +..||.+|+. +..||||||||++|||||+.+|+
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~ 186 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR-------KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPP 186 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCch-------hcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCC
Confidence 9999997531 1122 2456666666553 4579999985 47899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCch-h-hhhcCEEEEEeCCEEEEecChhHHhh
Q 011281 400 VLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRIT-S-VIDSDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 400 illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
+++||||||+||+.+...+.+.+++.. +++|+|+++|+++ . ...+|++++|++|++++.|+++++.+
T Consensus 187 vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 187 LLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred EEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 999999999999999999999998865 4899999999986 3 45699999999999999999998853
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-39 Score=347.42 Aligned_cols=201 Identities=18% Similarity=0.310 Sum_probs=173.5
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..++++|++++|++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.+
T Consensus 318 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred ceEEEEeeEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 369999999999653 5899999999999999999999999999999999999999999999872 479
Q ss_pred eEEcCCCc--cCc-cchhhhcCCC--CCCcHHHHHHHHHHcCCc-HHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 321 SIIPQDPT--MFE-GSVHNNLDPL--EEYADEEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 321 ~~v~Q~~~--lf~-~ti~~Ni~~~--~~~~~~~~~~~~~~~~l~-~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
+|++|++. +++ .|+++|+.+. ....++++.++++.+++. +..++ ....||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKK-----------SVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcC-----------cccccCHHHHHHHHHHHHH
Confidence 99999974 444 5999998643 123356778889988874 33332 2356899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEE-EecChhHHhhc
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE-EFDSPTRLLEN 467 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~el~~~ 467 (489)
+.+|++|||||||++||+.+.+.+.+.|.+. +.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++.
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999999999999876 4599999999999886 9999999999998 78999988764
No 324
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-40 Score=293.13 Aligned_cols=204 Identities=24% Similarity=0.300 Sum_probs=175.9
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
+.+++++.+|++....+++|+|++|.+||.++++||||||||||+++++|+.+|+.|+|.+||++|+....+ =|.
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----rgv 78 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----RGV 78 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----cee
Confidence 567889999987655699999999999999999999999999999999999999999999999999876543 489
Q ss_pred EcCCCccCc-cchhhhcCCC---CCCcH----HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 323 IPQDPTMFE-GSVHNNLDPL---EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~---~~~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
|+|++-|++ -++.||+.|+ ....+ +...+.+..+||.++-.+. -.+||||||||+.|||||
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~-----------i~qLSGGmrQRvGiARAL 147 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKY-----------IWQLSGGMRQRVGIARAL 147 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccc-----------eEeecchHHHHHHHHHHh
Confidence 999999998 5999999875 23333 3456778888887764433 356899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeC--CEEEEecChh
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLIEEFDSPT 462 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~ 462 (489)
.-+|+.|+||||+++||.-|++++++.+.+.. .++-+++|||+.+..-. ++|++||.. |+|++.=+.+
T Consensus 148 a~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 148 AVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred hcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999999999999999999997743 58999999999998876 999999975 6899865543
No 325
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.9e-39 Score=326.44 Aligned_cols=206 Identities=23% Similarity=0.372 Sum_probs=179.0
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH-hhccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 320 (489)
.+++++++..|++ -.+++||||++++||+.||.|+||||||||+++|.|+|+|++|+|.+||++++--++.+ .|..|
T Consensus 4 ~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 5899999999984 35899999999999999999999999999999999999999999999999997766655 56779
Q ss_pred eEEcCCCccCcc-chhhhcCCCCCC------c----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLEEY------A----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~~~------~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
|+|.|++.|++. |+.|||.++.+. + .+++.+.+++.|+.= ..|..| ..||-|||||+.
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v-------dp~~~V----~dLsVG~qQRVE 150 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV-------DPDAKV----ADLSVGEQQRVE 150 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC-------Ccccee----ecCCcchhHHHH
Confidence 999999999986 999999886432 1 345666667666532 233334 458999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 460 (489)
|-+||+++|++||||||||-|-|...+.+++.++++. .|+|||+|||++..+.. |||+.||.+|+++..-+
T Consensus 151 IlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 151 ILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999998865 68999999999999998 99999999999876544
No 326
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.4e-39 Score=349.60 Aligned_cols=210 Identities=24% Similarity=0.310 Sum_probs=170.8
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.++++|++++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|+
T Consensus 4 ~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 48999999999733 3599999999999999999999999999999999999999999999875 24699
Q ss_pred EEcCCCccCcc-chhhhcCCCCC-------------------Cc--------HHHHHHHHHHcCCcHHHHhcc-----cc
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLEE-------------------YA--------DEEIWEALDKCQLGNEVRKNE-----GK 368 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~~-------------------~~--------~~~~~~~~~~~~l~~~i~~l~-----~g 368 (489)
||+|+|.+|+. |++||+.++.. .. ..++.++++.++.++.-.... -|
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR 151 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC
Confidence 99999998865 99999975310 01 123555666666543211100 12
Q ss_pred ccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEE
Q 011281 369 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV 447 (489)
Q Consensus 369 ldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i 447 (489)
++ .......+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+. +.|+|+|||+++.+.. ||+|
T Consensus 152 l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d~v 228 (552)
T TIGR03719 152 CP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAGWI 228 (552)
T ss_pred CC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeE
Confidence 21 123445679999999999999999999999999999999999999999999875 3699999999999987 8999
Q ss_pred EEEeCCEEE-EecChhHHhh
Q 011281 448 LLLSYGLIE-EFDSPTRLLE 466 (489)
Q Consensus 448 ~~l~~G~i~-~~g~~~el~~ 466 (489)
++|++|+++ ..|++++..+
T Consensus 229 ~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EEEECCEEEEecCCHHHHHH
Confidence 999999976 7899988665
No 327
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.9e-39 Score=348.09 Aligned_cols=199 Identities=23% Similarity=0.315 Sum_probs=165.4
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+++|+++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|+
T Consensus 6 ~l~i~~l~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~ 73 (556)
T PRK11819 6 IYTMNRVSKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVG 73 (556)
T ss_pred EEEEeeEEEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 58999999999732 3599999999999999999999999999999999999999999999975 23699
Q ss_pred EEcCCCccCcc-chhhhcCCCCC-----------------Cc--------------------------HHHHHHHHHHcC
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLEE-----------------YA--------------------------DEEIWEALDKCQ 357 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~~-----------------~~--------------------------~~~~~~~~~~~~ 357 (489)
||+|+|.+++. |++||+.++.. .. ++++.++++.++
T Consensus 74 ~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 153 (556)
T PRK11819 74 YLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALR 153 (556)
T ss_pred EEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCC
Confidence 99999998875 99999965310 00 112233333333
Q ss_pred CcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 011281 358 LGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHR 437 (489)
Q Consensus 358 l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~ 437 (489)
+. ........||||||||++||||++.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+
T Consensus 154 l~------------~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd 219 (556)
T PRK11819 154 CP------------PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHD 219 (556)
T ss_pred CC------------cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCC
Confidence 31 112334569999999999999999999999999999999999999999999876 3599999999
Q ss_pred chhhhh-cCEEEEEeCCEEE-EecChhHHhh
Q 011281 438 ITSVID-SDMVLLLSYGLIE-EFDSPTRLLE 466 (489)
Q Consensus 438 ~~~~~~-~d~i~~l~~G~i~-~~g~~~el~~ 466 (489)
++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 220 ~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 220 RYFLDNVAGWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred HHHHHhhcCeEEEEeCCEEEEecCCHHHHHH
Confidence 999987 9999999999986 7899888754
No 328
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.1e-39 Score=311.99 Aligned_cols=192 Identities=22% Similarity=0.280 Sum_probs=157.6
Q ss_pred EEECCCCCcceeeeeEEee-----CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEc
Q 011281 250 VRYAPHLPLVLRGLTCTFL-----GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 324 (489)
Q Consensus 250 ~~y~~~~~~~l~~i~l~i~-----~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 324 (489)
|+|++..+ .+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|++
T Consensus 1 ~~y~~~~~-~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~ 67 (246)
T cd03237 1 YTYPTMKK-TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKP 67 (246)
T ss_pred CCCccccc-ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEec
Confidence 46765443 7888888886 69999999999999999999999999999999999984 589999
Q ss_pred CCCcc-CccchhhhcCCCCC-C--cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCE
Q 011281 325 QDPTM-FEGSVHNNLDPLEE-Y--ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 400 (489)
Q Consensus 325 Q~~~l-f~~ti~~Ni~~~~~-~--~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~i 400 (489)
|++.. +..|++||+.+... . ......++++.+++.+..+ .....||||||||++|||||+++|++
T Consensus 68 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 68 QYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred ccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99875 57899999864311 1 1234566777777755433 23456899999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEE--EecChhHHh
Q 011281 401 LVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIE--EFDSPTRLL 465 (489)
Q Consensus 401 lllDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~--~~g~~~el~ 465 (489)
+||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+++..+ ..+++.++.
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 99999999999999999999998764 37899999999999986 9999999776544 456666655
No 329
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=8.4e-39 Score=285.49 Aligned_cols=143 Identities=27% Similarity=0.468 Sum_probs=133.8
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|.+||. ..++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 67 (144)
T cd03221 1 IELENLSKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGY 67 (144)
T ss_pred CEEEEEEEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEE
Confidence 4689999999753 5999999999999999999999999999999999999999999999984 47999
Q ss_pred EcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEE
Q 011281 323 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 402 (489)
Q Consensus 323 v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ill 402 (489)
++| ||+||+||++||||++++|+++|
T Consensus 68 ~~~------------------------------------------------------lS~G~~~rv~laral~~~p~ill 93 (144)
T cd03221 68 FEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLLL 93 (144)
T ss_pred Ecc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 998 89999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCE
Q 011281 403 LDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGL 454 (489)
Q Consensus 403 lDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 454 (489)
|||||++||+.+...+.+.++++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 94 lDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 94 LDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999876 4799999999999976 89999999985
No 330
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.4e-39 Score=345.32 Aligned_cols=207 Identities=21% Similarity=0.314 Sum_probs=172.8
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH-hhccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 320 (489)
.++++|+++ .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+..|
T Consensus 268 ~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 268 VLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred eEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 589999983 1699999999999999999999999999999999999999999999999998766554 45679
Q ss_pred eEEcCCC---ccCcc-chhhhcCCC-----C---CC--cHHHHHHHHHHcCCc-HHHHhccccccchhhcCCCCCCchHH
Q 011281 321 SIIPQDP---TMFEG-SVHNNLDPL-----E---EY--ADEEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 321 ~~v~Q~~---~lf~~-ti~~Ni~~~-----~---~~--~~~~~~~~~~~~~l~-~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
+|+||++ .+|.. |+.+|+... . .. .++++.++++.+++. +. .+ .....||||||
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~~LSgG~k 409 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNH-------AE----QAARTLSGGNQ 409 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCC-------cc----CccccCCcHHH
Confidence 9999986 36654 999998421 0 11 123455667776663 22 22 23356899999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~e 463 (489)
||++||||++.+|++|||||||++||+.+.+.+.+.|.++. ++.|+|+|||+++.+.. |||+++|++|+|+..|+.++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998764 47899999999999986 99999999999999998887
Q ss_pred Hhh
Q 011281 464 LLE 466 (489)
Q Consensus 464 l~~ 466 (489)
+..
T Consensus 490 ~~~ 492 (510)
T PRK15439 490 INV 492 (510)
T ss_pred CCH
Confidence 654
No 331
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.7e-39 Score=375.93 Aligned_cols=211 Identities=20% Similarity=0.268 Sum_probs=182.2
Q ss_pred cEEEEEEEEEEC--CCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCceEEECCEeCCCCChHHh
Q 011281 242 EVDIHGLQVRYA--PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE---PTAGLIAIDGIDISSIGLHDL 316 (489)
Q Consensus 242 ~i~~~~v~~~y~--~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~ 316 (489)
.++++||+++|+ ++.+.+|+|||+++++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 378999999995 223469999999999999999999999999999999999998 78899999999984 257
Q ss_pred hccceEEcCCCccC-ccchhhhcCCC------CCCcH----HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 317 RSRLSIIPQDPTMF-EGSVHNNLDPL------EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 317 r~~i~~v~Q~~~lf-~~ti~~Ni~~~------~~~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
|+.++||+|++.++ ..|++||+.+. ...++ +++.++++..++.+. .|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-------~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY-------ADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-------CCCeeCCCCCCCCHHHh
Confidence 88999999987654 56999999752 12222 346788888887553 68899988889999999
Q ss_pred HHHHHHHHhccCCC-EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEecCchhh--hhcCEEEEEeCC-EEEEecC
Q 011281 386 QLVCLARVLLKKSK-VLVLDEATASVDTATDNLIQHTLGQH-FSDCTVITIAHRITSV--IDSDMVLLLSYG-LIEEFDS 460 (489)
Q Consensus 386 Qrl~laRall~~~~-illlDEpts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~--~~~d~i~~l~~G-~i~~~g~ 460 (489)
||++|||||+.+|+ ||+||||||+||+.+...+++.|+++ .+|+|||+++|+++.. ..+|++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999886 4689999999999963 569999999987 9999998
Q ss_pred hhH
Q 011281 461 PTR 463 (489)
Q Consensus 461 ~~e 463 (489)
..+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 643
No 332
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.6e-39 Score=314.35 Aligned_cols=200 Identities=22% Similarity=0.291 Sum_probs=159.6
Q ss_pred EEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEE-----------ECCEeCCCCChH
Q 011281 246 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA-----------IDGIDISSIGLH 314 (489)
Q Consensus 246 ~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~-----------~~g~~~~~~~~~ 314 (489)
.||+++|+++. .+++|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.....+
T Consensus 4 ~~~~~~y~~~~-~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPNS-FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCcc-hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 36889996542 48999994 999999999999999999999999999999999996 788888665333
Q ss_pred Hhhc--cceEEcCCCccCccchhhhcCCC--CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 315 DLRS--RLSIIPQDPTMFEGSVHNNLDPL--EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 315 ~~r~--~i~~v~Q~~~lf~~ti~~Ni~~~--~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
..+. .+++++|++.+++.++.+|+... ....++++.++++.+++.+... ....+||||||||++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~l 150 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLD-----------RNIDQLSGGELQRVAI 150 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHH
Confidence 2332 47888888776654444444321 1122456788888887765443 3445789999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
|||++++|+++||||||++||+.+...+.+.+++.. +++|+|+|||+++.+.. ||+|++|+ |++.+.|
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999998765 47899999999999986 99999995 5566544
No 333
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1e-38 Score=303.59 Aligned_cols=184 Identities=20% Similarity=0.218 Sum_probs=151.1
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEE-ECCEeCCCCChHHhhccceEEcCCCccCcc-chhh
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA-IDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHN 336 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~-~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ 336 (489)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 78999999999999999999999999999999999999999997 777532 13356778875 9999
Q ss_pred hcCCC---CCCcHHHHHHHH-HHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 011281 337 NLDPL---EEYADEEIWEAL-DKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 412 (489)
Q Consensus 337 Ni~~~---~~~~~~~~~~~~-~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~ 412 (489)
|+.+. ...+.++..+.+ +..+ ++..++++++ .||||||||++||||++.+|+++||||||+++|+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQLTQ-------LEQCYTDRVS----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhC-------hhHHhhchHh----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 99753 123344433332 3333 3333444443 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 413 ATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 413 ~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
.+.+.+.+.+.+..+++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 9999999988655566899999999999875 99999999999999999888764
No 334
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=339.08 Aligned_cols=208 Identities=20% Similarity=0.330 Sum_probs=168.5
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH-Hhhcc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSR 319 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 319 (489)
..|+++|+++.| +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.
T Consensus 249 ~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 249 VILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred cEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 358999999874 2489999999999999999999999999999999999999999999999999776543 34677
Q ss_pred ceEEcCCCc---cCc-cchhhhc-----CCC-C--C-Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCc
Q 011281 320 LSIIPQDPT---MFE-GSVHNNL-----DPL-E--E-YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSM 382 (489)
Q Consensus 320 i~~v~Q~~~---lf~-~ti~~Ni-----~~~-~--~-~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSg 382 (489)
++|++|++. +|+ .|+.+|. ... . . .. ++++.+.++..++.+. .. ......|||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~----~~~~~~LSg 394 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP------GH----RTQIGSLSG 394 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCC------Cc----ccccccCCc
Confidence 999999863 565 3776663 211 1 1 11 2234555555555210 12 233456999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 011281 383 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 383 Gq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 460 (489)
|||||++||||++.+|+||||||||++||+.+.+.+++.+.++. +++|+|+|||+++.+.. |||+++|++|+++..++
T Consensus 395 Gq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 395 GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999997754 57899999999999876 99999999999998776
Q ss_pred hh
Q 011281 461 PT 462 (489)
Q Consensus 461 ~~ 462 (489)
.+
T Consensus 475 ~~ 476 (491)
T PRK10982 475 TK 476 (491)
T ss_pred cc
Confidence 54
No 335
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.3e-38 Score=339.59 Aligned_cols=206 Identities=18% Similarity=0.233 Sum_probs=168.2
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCC-CChHHhhc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAIDGIDISS-IGLHDLRS 318 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-~~G~i~~~g~~~~~-~~~~~~r~ 318 (489)
..++++|+++.|++. .+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .....+|+
T Consensus 259 ~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 259 PRIVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred ceEEEeceEEEECCe--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 459999999999643 489999999999999999999999999999999998876 69999999987632 23334678
Q ss_pred cceEEcCCCccCc---cchhhhcCCC--C------CCc---HHHHHHHHHHcCCcH-HHHhccccccchhhcCCCCCCch
Q 011281 319 RLSIIPQDPTMFE---GSVHNNLDPL--E------EYA---DEEIWEALDKCQLGN-EVRKNEGKLESRVTENGENWSMG 383 (489)
Q Consensus 319 ~i~~v~Q~~~lf~---~ti~~Ni~~~--~------~~~---~~~~~~~~~~~~l~~-~i~~l~~gldt~vge~G~~LSgG 383 (489)
.++|++|++.++. .|+++++.+. . ... ++++.++++.+++.+ ..++. ...||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~~LSgG 405 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAP-----------FHSLSWG 405 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCc-----------hhhCCHH
Confidence 8999999987642 3677765321 0 111 245778888888765 43322 2458999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CC-ceEEEEecCchhhhh--cCEEEEEeCCEEEEec
Q 011281 384 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SD-CTVITIAHRITSVID--SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 384 q~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~-~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g 459 (489)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++. ++ .|+|+|||+++.+.. ||++++|++|+|++.-
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999999998864 34 469999999999974 7999999999998743
No 336
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-38 Score=295.04 Aligned_cols=209 Identities=21% Similarity=0.406 Sum_probs=180.4
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.+++++|+.+|++. .|++|+||++++|++.+++|||||||||.+++|+|+++|++|+|.++|.+++. ..++.||
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 47899999999754 59999999999999999999999999999999999999999999999998864 4677899
Q ss_pred EEcCCCccCcc-chhhhcCCC---CCCcHHHHHH----HHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFEG-SVHNNLDPL---EEYADEEIWE----ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~---~~~~~~~~~~----~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
|+|.+--|++. |+.|-+.|. ...+..++.+ .+++.++.+. -.+.-..||-|.+|+|.+.-+
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~-----------~~~kIk~LSKGnqQKIQfisa 144 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGK-----------KTKKIKELSKGNQQKIQFISA 144 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccccc-----------ccchHHHhhhhhhHHHHHHHH
Confidence 99999999975 999999874 3445554443 3444433322 122334689999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
++++|+++|||||+|+|||.+.+.+.+.+.+++ +|+|||+.||+|+-+.. ||+++.|++|+.|-+|+.+++.+.
T Consensus 145 viHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 145 VIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred HhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999999999999999999999998765 68999999999999997 999999999999999999999863
No 337
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=305.68 Aligned_cols=230 Identities=22% Similarity=0.334 Sum_probs=194.2
Q ss_pred cEEEEEEEEEEC--CCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEeCCCCChH
Q 011281 242 EVDIHGLQVRYA--PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-----TAGLIAIDGIDISSIGLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~--~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 314 (489)
-++++|+++.|. +....++++|||+|++||.+|+||+||||||-..+.++|+++- .+|+|.++|.++-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 488999988885 3344589999999999999999999999999999999999864 578999999999888877
Q ss_pred Hhhc----cceEEcCCCcc-Cc--cchhhh----cCCC----CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCC
Q 011281 315 DLRS----RLSIIPQDPTM-FE--GSVHNN----LDPL----EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 379 (489)
Q Consensus 315 ~~r~----~i~~v~Q~~~l-f~--~ti~~N----i~~~----~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~ 379 (489)
.+|. +|++++|+|.- .+ -||... |... .....+++.+.++.+|+.+--. ++..-...
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCcc
Confidence 7664 79999999962 22 255544 3332 3445678999999999976422 23344567
Q ss_pred CCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEE
Q 011281 380 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIE 456 (489)
Q Consensus 380 LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 456 (489)
||||||||+.||.||+.+|++||-||||.+||...+.+|.+.|+++. .|..+++|||++..++. ||||.||.+|+|+
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 89999999999999999999999999999999999999999998764 47899999999999998 9999999999999
Q ss_pred EecChhHHhhcCCChHHHHHHHH
Q 011281 457 EFDSPTRLLENKSSSFAQLVAEY 479 (489)
Q Consensus 457 ~~g~~~el~~~~~~~~~~l~~~~ 479 (489)
|+|+.+++.+.+..+|.+.+-..
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLAA 260 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHhc
Confidence 99999999998888887766543
No 338
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=5.5e-36 Score=305.91 Aligned_cols=416 Identities=17% Similarity=0.167 Sum_probs=262.3
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q 011281 23 NRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFI-PVIAISIWYQQYYLPSARELSRLVGVSKAPVI 101 (489)
Q Consensus 23 ~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (489)
.|++.|++.....+......++.+++.++....-++....+...+.+ .-+.+...+.+.+.+...+..-.++...+++.
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 78999999877655555444444444333333222222111111111 11111223344455555555555555566777
Q ss_pred HHHHHHHhhHHHHHHHhhHHHHH----HHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh----cC
Q 011281 102 QHFAETISGSTIIRSFDQVSRFQ----DTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFII-SV----PE 172 (489)
Q Consensus 102 ~~~~e~l~gi~~Ik~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~ 172 (489)
-.-++...+.++|-.|+.++... .++++..+...+ ......|+.+...++-.+..++..+++. .+ ..
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~----l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y 341 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRE----LMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVY 341 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhheeeEEeeeeeccccc
Confidence 77778888999999997554322 223332222211 1122334444433333222111111110 01 12
Q ss_pred CcccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------CC----------Cccccc-
Q 011281 173 GVVDPAIAGLAVTF----GLNLNMLQASLISKLCNLENRIISVERILQYMCIPN-------EP----------PLVIEA- 230 (489)
Q Consensus 173 g~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~-------~~----------~~~~~~- 230 (489)
+.+++......+.. +..+...+..+......+.+-..-..|+-++++.-+ +. ......
T Consensus 342 ~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~ 421 (659)
T KOG0060|consen 342 DDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLP 421 (659)
T ss_pred CCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCC
Confidence 23343332222111 111111112122222222222333556655543110 00 000000
Q ss_pred CCCCCCCCCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 011281 231 SRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS 310 (489)
Q Consensus 231 ~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~ 310 (489)
+......|....|++++|++.-|.+.+.+++|+||+|+.|+.+.|+||||||||+|++.+.|+|+..+|.+.--...-.
T Consensus 422 ~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~- 500 (659)
T KOG0060|consen 422 PGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP- 500 (659)
T ss_pred CCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-
Confidence 0011123445679999999999886666788999999999999999999999999999999999999999986432111
Q ss_pred CChHHhhccceEEcCCCccCccchhhhcCCC--------CCCcHHHHHHHHHHcCCcHHHHhccccccchhh-cCCCCCC
Q 011281 311 IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPL--------EEYADEEIWEALDKCQLGNEVRKNEGKLESRVT-ENGENWS 381 (489)
Q Consensus 311 ~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~--------~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vg-e~G~~LS 381 (489)
+.+-||||.|++-.||+|+.+.+. +..+++++.+.++.+++.+.+++ .+|+|+++. +....||
T Consensus 501 -------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS 572 (659)
T KOG0060|consen 501 -------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLS 572 (659)
T ss_pred -------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcC
Confidence 358999999999999999999763 23678999999999999887665 578887764 5677899
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCC
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYG 453 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 453 (489)
+||+||+|+||.++++|++-+|||+|||+|.+.|..+.+.+++. +.|.|.|+||-+.-+.=|.++-|+++
T Consensus 573 ~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 573 PGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred HHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 99999999999999999999999999999999999999888764 88999999999999999999999874
No 339
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3e-37 Score=333.28 Aligned_cols=202 Identities=20% Similarity=0.261 Sum_probs=167.0
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..++++|++++|++. .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 321 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 321 KVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred eEEEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 359999999999653 599999999999999999999999999999999999999999999854 21 59
Q ss_pred eEEcCCCc-cCc-cchhhhcCCCCC---C--cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 321 SIIPQDPT-MFE-GSVHNNLDPLEE---Y--ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 321 ~~v~Q~~~-lf~-~ti~~Ni~~~~~---~--~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
+|++|++. +++ .|++||+.++.. . .+.+..++++.+++.+.. .......||||||||++||||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHH
Confidence 99999973 665 499999976421 1 133455677777764321 112234689999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeC-CEEE-EecChhHHhhc
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSY-GLIE-EFDSPTRLLEN 467 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~el~~~ 467 (489)
++.+|++|||||||++||+.+.+.+.+.|.++. .|+|+|||+++.+.. ||+|++|++ |+++ ..|++++..+.
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 999999999999999999999999999998863 499999999999886 999999997 5876 56888776543
No 340
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-37 Score=279.05 Aligned_cols=154 Identities=38% Similarity=0.547 Sum_probs=143.6
Q ss_pred EEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEc
Q 011281 245 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 324 (489)
Q Consensus 245 ~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 324 (489)
++|++|+|++. ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.......+++.++|++
T Consensus 2 ~~~~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 2 IENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred eEEEEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 68999999754 5999999999999999999999999999999999999999999999999998776777888999999
Q ss_pred CCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEe
Q 011281 325 QDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLD 404 (489)
Q Consensus 325 Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlD 404 (489)
| |||||+||++||||++.+|++++||
T Consensus 80 q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 80 Q------------------------------------------------------LSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred e------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9 8999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCE
Q 011281 405 EATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVID-SDMVLLLSYGL 454 (489)
Q Consensus 405 Epts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~ 454 (489)
|||++||+.+...+.+.+.+..+ ++|++++||+++.+.. ||+++++++|+
T Consensus 106 Ep~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 106 EPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999987643 5899999999999998 69999999875
No 341
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.9e-37 Score=332.55 Aligned_cols=201 Identities=20% Similarity=0.275 Sum_probs=168.3
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..++++||++.|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 323 ~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KL 389 (556)
T ss_pred eEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EE
Confidence 359999999999653 599999999999999999999999999999999999999999999954 21 59
Q ss_pred eEEcCCC-ccCc-cchhhhcCCCCC-----CcHHHHHHHHHHcCCcH-HHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 321 SIIPQDP-TMFE-GSVHNNLDPLEE-----YADEEIWEALDKCQLGN-EVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 321 ~~v~Q~~-~lf~-~ti~~Ni~~~~~-----~~~~~~~~~~~~~~l~~-~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
+|++|++ .++. .|++||+.+... ..+.+.+++++..++.+ ..++ ....||||||||++|||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgG~~qrv~la~ 458 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQK-----------KVGVLSGGERNRLHLAK 458 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcC-----------chhhCCHHHHHHHHHHH
Confidence 9999997 5665 499999975321 12334566777777743 2222 23468999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeC-CEEE-EecChhHHhhc
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSY-GLIE-EFDSPTRLLEN 467 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~el~~~ 467 (489)
|++.+|++|||||||++||+.+.+.+.+.|.+. . .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.+.
T Consensus 459 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 459 TLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999999876 3 499999999999886 999999986 7876 48888887764
No 342
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.6e-37 Score=285.62 Aligned_cols=151 Identities=24% Similarity=0.255 Sum_probs=133.8
Q ss_pred EEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcC
Q 011281 246 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQ 325 (489)
Q Consensus 246 ~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q 325 (489)
.||+++|++. .+++++ |++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++|
T Consensus 4 ~~l~~~~~~~--~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q 68 (177)
T cd03222 4 PDCVKRYGVF--FLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQ 68 (177)
T ss_pred CCeEEEECCE--EEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcc
Confidence 5789999653 578884 9999999999999999999999999999999999999999853 788888
Q ss_pred CCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeC
Q 011281 326 DPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDE 405 (489)
Q Consensus 326 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDE 405 (489)
++. ||||||||++||||++.+|++++|||
T Consensus 69 ~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLDE 97 (177)
T cd03222 69 YID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDE 97 (177)
T ss_pred cCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 653 89999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc-C-CceEEEEecCchhhhh-cCEEEEEeCCEEEEe--cChh
Q 011281 406 ATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEF--DSPT 462 (489)
Q Consensus 406 pts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~--g~~~ 462 (489)
||++||+.+.+.+.+.+.+.. + ++|+|+|||+++.+.. ||++++|+++-.+.+ |++.
T Consensus 98 Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 999999999999999998764 3 3899999999999986 999999998866533 5544
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-37 Score=336.36 Aligned_cols=200 Identities=20% Similarity=0.315 Sum_probs=169.2
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..|+++||++.|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 311 ~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 311 PLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred ceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 35999999999964 35999999999999999999999999999999999999999999999741 269
Q ss_pred eEEcCCC--ccCc-cchhhhcC-CCCCCcHHHHHHHHHHcCCcH-HHHhccccccchhhcCCCCCCchHHHHHHHHHHhc
Q 011281 321 SIIPQDP--TMFE-GSVHNNLD-PLEEYADEEIWEALDKCQLGN-EVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 395 (489)
Q Consensus 321 ~~v~Q~~--~lf~-~ti~~Ni~-~~~~~~~~~~~~~~~~~~l~~-~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall 395 (489)
+|++|++ .++. .|+.+++. +......+++.++++.+++.. ...+ + ...||||||||++|||+++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~-------~----~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTE-------E----TRRFSGGEKARLVLALIVW 446 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcC-------c----hhhCCHHHHHHHHHHHHHh
Confidence 9999985 3443 37888764 222334567788888888753 3322 2 2458999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEE-EecChhHHhh
Q 011281 396 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE-EFDSPTRLLE 466 (489)
Q Consensus 396 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~el~~ 466 (489)
.+|++|||||||++||+.+...+.+.|.++ . .|||+|||++..+.. ||+|++|++|+++ ..|++++..+
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999999999999999886 3 599999999999986 9999999999997 7899988743
No 344
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7.8e-37 Score=335.69 Aligned_cols=199 Identities=18% Similarity=0.255 Sum_probs=165.2
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..++++||++.|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999643 3589999999999999999999999999999999999999999999875 2469
Q ss_pred eEEcCCCccCccchhhhcC--C---CCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc
Q 011281 321 SIIPQDPTMFEGSVHNNLD--P---LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 395 (489)
Q Consensus 321 ~~v~Q~~~lf~~ti~~Ni~--~---~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall 395 (489)
+|++|++. ...++.+|.. + .....++++.++++.+++.+... ......||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHHHHHHHHHHHh
Confidence 99999863 2224444421 1 12345678889999998864321 1224568999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEE-EecChhHH
Q 011281 396 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE-EFDSPTRL 464 (489)
Q Consensus 396 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~el 464 (489)
.+|++|||||||++||+.+.+.+.+.+.+. + .|+|+|||+++.+.. ||+|++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999888765 3 499999999999986 9999999999998 67877664
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=7.5e-37 Score=334.82 Aligned_cols=201 Identities=20% Similarity=0.292 Sum_probs=167.3
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..|+++||+++|++ ..+++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 318 ~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 318 IVFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred ceEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 35999999999964 35899999999999999999999999999999999999999999998 4322 59
Q ss_pred eEEcCCC-ccCcc-chhhhcCCCC-CC--c--HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 321 SIIPQDP-TMFEG-SVHNNLDPLE-EY--A--DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 321 ~~v~Q~~-~lf~~-ti~~Ni~~~~-~~--~--~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
+|++|++ .+++. |+.+|+.+.. .. . ..++.+.++.+++.... .+.+ ...||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~----~~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKR------AMTP----VKALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHH------HhCh----hhhCCHHHHHHHHHHHH
Confidence 9999986 46654 9999997632 11 1 34566777777764211 1222 24589999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEe-CCEEEE-ecChhHHhh
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLS-YGLIEE-FDSPTRLLE 466 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~-~G~i~~-~g~~~el~~ 466 (489)
++.+|++|||||||++||+.+.+.+.+.+.+. +.|+|+|||+.+.+.. ||+|++++ +|+|+. .|++++.+.
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999875 4599999999999876 99999998 899875 788888754
No 346
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.8e-37 Score=275.36 Aligned_cols=214 Identities=24% Similarity=0.356 Sum_probs=187.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC-EeCCCCChHHh-hcc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG-IDISSIGLHDL-RSR 319 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g-~~~~~~~~~~~-r~~ 319 (489)
.++++||+++|++- .+|+++||++.+||.-+|+|||||||||++..|+|--+|+.|+++++| .+++.++...+ |..
T Consensus 5 iL~~~~vsVsF~GF--~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 5 ILYLDGVSVSFGGF--KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred eEEEeceEEEEcce--eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 48999999999765 499999999999999999999999999999999999999999999999 99999987776 556
Q ss_pred ceEEcCCCccCcc-chhhhcCCC-------------C--CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCch
Q 011281 320 LSIIPQDPTMFEG-SVHNNLDPL-------------E--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG 383 (489)
Q Consensus 320 i~~v~Q~~~lf~~-ti~~Ni~~~-------------~--~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgG 383 (489)
||--+|.|..|.. |++||+.+. + .....++.+++...||.+..+.. ...||.|
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~-----------A~~LSHG 151 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL-----------AALLSHG 151 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh-----------hhhhccc
Confidence 9999999999986 999998532 1 12234789999999888765432 3458999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 011281 384 QRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPT 462 (489)
Q Consensus 384 q~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 462 (489)
|||++.|+..+.++|++|+||||++++-.+.....-+.++.+...+++++|-|++.+++. ||+|.||..|.|...|+.+
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld 231 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence 999999999999999999999999999655555667778777778999999999999998 9999999999999999999
Q ss_pred HHhhcC
Q 011281 463 RLLENK 468 (489)
Q Consensus 463 el~~~~ 468 (489)
++.+++
T Consensus 232 ~v~~dp 237 (249)
T COG4674 232 EVQNDP 237 (249)
T ss_pred HhhcCc
Confidence 998765
No 347
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.9e-37 Score=280.09 Aligned_cols=203 Identities=25% Similarity=0.346 Sum_probs=169.3
Q ss_pred CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCc--cCc-c
Q 011281 256 LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT--MFE-G 332 (489)
Q Consensus 256 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~-~ 332 (489)
.+++|+++|++|++|+++-|+|.||||||||++.|+|-..|++|+|.|||++++..+..+....++-|+|+|- .|+ -
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 3469999999999999999999999999999999999999999999999999999999888888999999996 454 4
Q ss_pred chhhhcCCCC------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCC
Q 011281 333 SVHNNLDPLE------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 406 (489)
Q Consensus 333 ti~~Ni~~~~------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEp 406 (489)
||.||+.++. ......- .-.+....+.+..++.|++-.++.+-.-|||||||-++|+.|-++.|+||+|||-
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln--~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALN--ERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhh--HHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 9999996531 1111100 0111122345667788888888888888999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 011281 407 TASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 407 ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 460 (489)
|++|||.+.+.+++.=.+.. .+-|.+||||+++.+-+ .+|.++|++|+|+.+-+
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999998887755533 35699999999998765 79999999999997544
No 348
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-36 Score=282.39 Aligned_cols=207 Identities=20% Similarity=0.279 Sum_probs=174.8
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh-HHhhcc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSR 319 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 319 (489)
.-|+++||++.|.+. ++|+|+|++|++||+.+|+||||||||||+++++|.++|++|.+.+.|+....-+. .++|++
T Consensus 30 ~li~l~~v~v~r~gk--~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 30 PLIELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred ceEEecceEEEECCE--eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 459999999999754 69999999999999999999999999999999999999999999999999877776 899999
Q ss_pred ceEEcCCCcc-C--ccchhhhcC--------CCC-CCcHH---HHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchH
Q 011281 320 LSIIPQDPTM-F--EGSVHNNLD--------PLE-EYADE---EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 384 (489)
Q Consensus 320 i~~v~Q~~~l-f--~~ti~~Ni~--------~~~-~~~~~---~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq 384 (489)
||+|+-+-+. | ..+++|-+. +.. +.+++ +....++.+++.+..++ | =..||-||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r-~----------~~~LS~Ge 176 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR-P----------FGSLSQGE 176 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccC-c----------hhhcCHhH
Confidence 9999976542 2 236666553 112 44544 45667888888774432 2 23589999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 011281 385 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS---DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 385 ~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~---~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 460 (489)
|||+-|||||+++|++|||||||++||....+.+.+.+.+... +.++|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999999987642 5689999999999988 59999999999998874
No 349
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.1e-36 Score=328.82 Aligned_cols=192 Identities=22% Similarity=0.283 Sum_probs=163.9
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..++++|++++|++. .|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ + .+
T Consensus 339 ~~l~~~~ls~~~~~~---~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~----------~i 402 (590)
T PRK13409 339 TLVEYPDLTKKLGDF---SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L----------KI 402 (590)
T ss_pred eEEEEcceEEEECCE---EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------eE
Confidence 358999999999642 5999999999999999999999999999999999999999999985 1 59
Q ss_pred eEEcCCCccC-ccchhhhcCCCC-CC-cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 321 SIIPQDPTMF-EGSVHNNLDPLE-EY-ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 321 ~~v~Q~~~lf-~~ti~~Ni~~~~-~~-~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
+|+||++.++ +.|+++|+.+.. .. ......++++..++.+..++. ...||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----------~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKN-----------VKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCC-----------cccCCHHHHHHHHHHHHHhcC
Confidence 9999998764 569999997632 12 233567788888886654433 345899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 460 (489)
|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ ++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999998864 37899999999999886 999999965 7777666
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=330.08 Aligned_cols=199 Identities=22% Similarity=0.239 Sum_probs=157.5
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++||+++|++. .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .++|
T Consensus 2 i~i~nls~~~g~~--~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~ 68 (638)
T PRK10636 2 IVFSSLQIRRGVR--VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAW 68 (638)
T ss_pred EEEEEEEEEeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEE
Confidence 7899999999653 59999999999999999999999999999999999999999999998831 3677
Q ss_pred EcCCCccCccchhhhcCCC----------------------------------CCCcHHHHHHHHHHcCCcHHHHhcccc
Q 011281 323 IPQDPTMFEGSVHNNLDPL----------------------------------EEYADEEIWEALDKCQLGNEVRKNEGK 368 (489)
Q Consensus 323 v~Q~~~lf~~ti~~Ni~~~----------------------------------~~~~~~~~~~~~~~~~l~~~i~~l~~g 368 (489)
++|++..+..|+.+++.-. ....+.++.++++.+|+.+.
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~------- 141 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNE------- 141 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCch-------
Confidence 7775544433443332100 00012344555555555311
Q ss_pred ccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEE
Q 011281 369 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV 447 (489)
Q Consensus 369 ldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i 447 (489)
........||||||||++|||||+.+|++|||||||++||+.+...+.+.|.+. +.|+|+|||+...+.. ||+|
T Consensus 142 ---~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i 216 (638)
T PRK10636 142 ---QLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKI 216 (638)
T ss_pred ---hhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEE
Confidence 112233568999999999999999999999999999999999999999998875 5699999999999986 9999
Q ss_pred EEEeCCEEE-EecChhHHhh
Q 011281 448 LLLSYGLIE-EFDSPTRLLE 466 (489)
Q Consensus 448 ~~l~~G~i~-~~g~~~el~~ 466 (489)
++|++|+++ ..|+++....
T Consensus 217 ~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 217 IHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred EEEeCCEEEEecCCHHHHHH
Confidence 999999997 4788887764
No 351
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.7e-36 Score=351.91 Aligned_cols=211 Identities=20% Similarity=0.228 Sum_probs=177.8
Q ss_pred cEEEEEEEEEECC-----------CCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEeC
Q 011281 242 EVDIHGLQVRYAP-----------HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDI 308 (489)
Q Consensus 242 ~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~--~~G~i~~~g~~~ 308 (489)
.++++||+|..+. +...+|+|+|+++++|++++|+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999999852 123589999999999999999999999999999999999773 789999999876
Q ss_pred CCCChHHhhccceEEcCCCccCc-cchhhhcCCC------CCCcH----HHHHHHHHHcCCcHHHHhccccccchhhcCC
Q 011281 309 SSIGLHDLRSRLSIIPQDPTMFE-GSVHNNLDPL------EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENG 377 (489)
Q Consensus 309 ~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~------~~~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~G 377 (489)
. ...+++.+|||+|++.+++ .|++||+.+. ++.++ +.++++++..++.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 2456778999999988776 4999999752 12222 246788888888654 466776544
Q ss_pred -CCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchh--hhhcCEEEEEeC-
Q 011281 378 -ENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS--VIDSDMVLLLSY- 452 (489)
Q Consensus 378 -~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~~- 452 (489)
..||||||||++|||+|+.+|++|+||||||+||+.+...+++.|++.. +|+|+|+++|+++. ...+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 5799999999999999999999999999999999999999999998864 57899999999984 356999999996
Q ss_pred CEEEEecChh
Q 011281 453 GLIEEFDSPT 462 (489)
Q Consensus 453 G~i~~~g~~~ 462 (489)
|+++..|+..
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
No 352
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.7e-36 Score=268.95 Aligned_cols=227 Identities=26% Similarity=0.340 Sum_probs=178.4
Q ss_pred EEEEEEEEEEC-------CCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH
Q 011281 243 VDIHGLQVRYA-------PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD 315 (489)
Q Consensus 243 i~~~~v~~~y~-------~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~ 315 (489)
++++|++..|. .+...+++.|||++++|+.+||+|.||||||||.|+|+|..+|++|+|++||+++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 55666654442 12234789999999999999999999999999999999999999999999999986555544
Q ss_pred hhccceEEcCCCc-cCc-----cchhh-----hcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchH
Q 011281 316 LRSRLSIIPQDPT-MFE-----GSVHN-----NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 384 (489)
Q Consensus 316 ~r~~i~~v~Q~~~-lf~-----~ti~~-----Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq 384 (489)
..+.|-+++|||. -|+ |+|.| |-.+.++.-.+++.+-++.+||...=... ....||.||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~----------~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----------YPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc----------chhhcCchh
Confidence 4567999999985 233 12221 21222233356788899999986532211 234579999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecCh
Q 011281 385 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSP 461 (489)
Q Consensus 385 ~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~--~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 461 (489)
|||+||||||.-+|+|+|.||+.++||...+.++.+...++ ..|..-|.|+.++-.+++ +|+|+||++|+++|.|+.
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 99999999999999999999999999999999888887654 347899999999999999 999999999999999999
Q ss_pred hHHhhcCCC-hHHHHHHHH
Q 011281 462 TRLLENKSS-SFAQLVAEY 479 (489)
Q Consensus 462 ~el~~~~~~-~~~~l~~~~ 479 (489)
.++++.+.. .-+++++..
T Consensus 235 ~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 235 ADVLASPLHELTKRLIESH 253 (267)
T ss_pred hhhhcCCccHHHHHHHHHH
Confidence 999987543 344555443
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=6.3e-36 Score=274.73 Aligned_cols=157 Identities=23% Similarity=0.254 Sum_probs=130.7
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhh
Q 011281 257 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 336 (489)
Q Consensus 257 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 336 (489)
.++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. ..+ .++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 45899999999999999999999999999999996 368999998752 111 2345788877
Q ss_pred hcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC--CCEEEEeCCCCCCCHHH
Q 011281 337 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK--SKVLVLDEATASVDTAT 414 (489)
Q Consensus 337 Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~--~~illlDEpts~lD~~~ 414 (489)
.++++..++.++ ........||||||||++||||++++ |+++||||||++||+.+
T Consensus 68 -------------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -------------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -------------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 345666665432 13445678999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCEEE
Q 011281 415 DNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIE 456 (489)
Q Consensus 415 ~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 456 (489)
.+.+.+.+++.. .++|+|+|||+++.+..||+|++|++|+..
T Consensus 125 ~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~ 167 (176)
T cd03238 125 INQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGK 167 (176)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCC
Confidence 999999998764 589999999999998889999999775543
No 354
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.2e-35 Score=321.93 Aligned_cols=198 Identities=24% Similarity=0.278 Sum_probs=155.4
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. . .++
T Consensus 3 ~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-~----------~~~ 69 (635)
T PRK11147 3 LISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-L----------IVA 69 (635)
T ss_pred EEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-C----------EEE
Confidence 3789999999975 35999999999999999999999999999999999999999999999872 1 256
Q ss_pred EEcCCCccC-ccchhhhcCCC----------------------------------------CC-CcHHHHHHHHHHcCCc
Q 011281 322 IIPQDPTMF-EGSVHNNLDPL----------------------------------------EE-YADEEIWEALDKCQLG 359 (489)
Q Consensus 322 ~v~Q~~~lf-~~ti~~Ni~~~----------------------------------------~~-~~~~~~~~~~~~~~l~ 359 (489)
+++|.+... .+++.+++..+ .. ..+.++.++++.+++.
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 666654321 23444432100 00 0122344444444432
Q ss_pred HHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCch
Q 011281 360 NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT 439 (489)
Q Consensus 360 ~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 439 (489)
.......||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++ +.|+|+|||+..
T Consensus 150 -------------~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~ 214 (635)
T PRK11147 150 -------------PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRS 214 (635)
T ss_pred -------------CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHH
Confidence 12234569999999999999999999999999999999999999999999876 369999999999
Q ss_pred hhhh-cCEEEEEeCCEEEE-ecChhHHhhc
Q 011281 440 SVID-SDMVLLLSYGLIEE-FDSPTRLLEN 467 (489)
Q Consensus 440 ~~~~-~d~i~~l~~G~i~~-~g~~~el~~~ 467 (489)
.+.. ||+|++|++|+++. .|++++.+..
T Consensus 215 ~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 215 FIRNMATRIVDLDRGKLVSYPGNYDQYLLE 244 (635)
T ss_pred HHHHhcCeEEEEECCEEEEecCCHHHHHHH
Confidence 9987 99999999999984 6998877653
No 355
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.2e-35 Score=347.35 Aligned_cols=199 Identities=24% Similarity=0.242 Sum_probs=168.0
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCC----CCCCceEEECCEeCCCCChHHhhccceEEcCCCccCcc-
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV----EPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG- 332 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~- 332 (489)
.+|+|+|+++++||+++|+||||||||||+|+|+|.. .|.+|+|.+||+++.+.. ...|+.++||+|++.+|+.
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCCC
Confidence 4899999999999999999999999999999999986 579999999999886543 3467789999999988875
Q ss_pred chhhhcCCCC----------CCcHHH-----HHHHHHHcCCcHHHHhccccccchhhc-CCCCCCchHHHHHHHHHHhcc
Q 011281 333 SVHNNLDPLE----------EYADEE-----IWEALDKCQLGNEVRKNEGKLESRVTE-NGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 333 ti~~Ni~~~~----------~~~~~~-----~~~~~~~~~l~~~i~~l~~gldt~vge-~G~~LSgGq~Qrl~laRall~ 396 (489)
|++||+.+.. ..++++ .+.+++..||.+. .||.+|+ ....||||||||++|||||+.
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-------~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHT-------RNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccc-------cCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 9999997631 122222 2346677776543 5777775 456799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCc-hhhh-hcCEEEEEeCCEEEEecChhHH
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRI-TSVI-DSDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~-~~~~-~~d~i~~l~~G~i~~~g~~~el 464 (489)
+|++++|||||++||+.+...+.+.|+++. .++|+|+++|++ +.+. .+|+|++|++|+++..|+.+++
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 999999999999999999999999999865 378999999997 4554 4999999999999999999887
No 356
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-35 Score=254.07 Aligned_cols=194 Identities=22% Similarity=0.301 Sum_probs=166.5
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCceEEECCEeCCCCChHHhhc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP---TAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~---~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
.+.++||+.+.++. ..|.++||+|.+||++-|.||||||||||+.-+.|.+.+ .+|++.+|+++++.++. -++
T Consensus 2 ~l~l~nvsl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa--~qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA--AQR 77 (213)
T ss_pred ceeeeeeeecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch--hhh
Confidence 36789999887654 478999999999999999999999999999999999987 58999999999988764 478
Q ss_pred cceEEcCCCccCcc-chhhhcCCCC------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 319 RLSIIPQDPTMFEG-SVHNNLDPLE------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~-ti~~Ni~~~~------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
++|+++||+++|+. +|.+|+.|.- +........|+++.+|..+..+.|+. ||||||-|++|-
T Consensus 78 q~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~t-----------lSGGQrARvaL~ 146 (213)
T COG4136 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPAT-----------LSGGQRARVALL 146 (213)
T ss_pred heeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhh-----------cCcchHHHHHHH
Confidence 99999999999986 9999998742 22345578899999999998887765 599999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEecCchhhhhcCEEEEE
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVIDSDMVLLL 450 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~--~~~~t~i~itH~~~~~~~~d~i~~l 450 (489)
|+|+..|+.++||||+|.||..-+.++.+-.... ..+.-+|.|||+++.+....||+-|
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999888887776432 2477899999999999876666544
No 357
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.1e-35 Score=272.14 Aligned_cols=189 Identities=23% Similarity=0.327 Sum_probs=160.3
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhh
Q 011281 257 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 336 (489)
Q Consensus 257 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 336 (489)
.++|+||||++.+||.++|+|+||||||||+|+|+|.|+|++|+|.++|.--.-+.. .+|+ -.+.|.||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf------~pelTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGF------DPELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCC------CcccchHH
Confidence 468999999999999999999999999999999999999999999999953322211 1221 12348999
Q ss_pred hcCCC-------CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCC
Q 011281 337 NLDPL-------EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 409 (489)
Q Consensus 337 Ni~~~-------~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~ 409 (489)
||.+. +...++.+.++.+.++|.+|++.-- .++|.|++-||++|-|.-.+|+|||+||..|.
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~Pv-----------ktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPV-----------KTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCch-----------hhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 99642 2334677888999999999976533 34699999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh-cCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 410 VDTATDNLIQHTLGQH-FSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 410 lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
.|+.-.++-.+.+.+. .+++|+|+|||+++.+++ |||+++|++|+|...|+++|..+.
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 9999888888888776 578999999999999998 999999999999999999999863
No 358
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-34 Score=266.57 Aligned_cols=214 Identities=27% Similarity=0.313 Sum_probs=184.8
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCChHHh-hc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGLIAIDGIDISSIGLHDL-RS 318 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 318 (489)
.++++|++.+-.+. +.+|++|||+|++||+.+|.||||||||||.++|+|. |++++|+|.+||+||.++++++. |.
T Consensus 3 ~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 47899999998754 3599999999999999999999999999999999997 68999999999999999998764 66
Q ss_pred cceEEcCCCccCcc-chhhhcCCC-------CC---CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 319 RLSIIPQDPTMFEG-SVHNNLDPL-------EE---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~-ti~~Ni~~~-------~~---~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
-|.+.+|.|.=++| |+.+-++.+ +. ...++++++++..++++... +-.|+ ..+|||||.|
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l------~R~vN---~GFSGGEkKR 152 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL------ERYVN---EGFSGGEKKR 152 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHh------hcccC---CCcCcchHHH
Confidence 79999999999988 888776532 11 23567888999999988332 22222 2469999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhc--CEEEEEeCCEEEEecChhHH
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDS--DMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~--d~i~~l~~G~i~~~g~~~el 464 (489)
..|+.+++-+|++.|||||=|+||...-+.+-+.+..++ ++.++++|||.-..+... |++-||-+|+|+..|.+ ||
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 999999999999999999999999999999999998765 578999999999999874 99999999999999998 77
Q ss_pred hh
Q 011281 465 LE 466 (489)
Q Consensus 465 ~~ 466 (489)
..
T Consensus 232 ~~ 233 (251)
T COG0396 232 AE 233 (251)
T ss_pred HH
Confidence 65
No 359
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7.2e-36 Score=322.45 Aligned_cols=193 Identities=21% Similarity=0.267 Sum_probs=159.4
Q ss_pred EEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEE-----------ECCEeCCCCChH
Q 011281 246 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIA-----------IDGIDISSIGLH 314 (489)
Q Consensus 246 ~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~-----------~~g~~~~~~~~~ 314 (489)
++++++|+++ ..+|++++ .+++||+++|+||||||||||+++|+|+++|++|+|. ++|.++..+..+
T Consensus 77 ~~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 77 EEPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred cCceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 3479999753 35899999 8999999999999999999999999999999999997 899888654321
Q ss_pred --Hhhcc----ceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH
Q 011281 315 --DLRSR----LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388 (489)
Q Consensus 315 --~~r~~----i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl 388 (489)
..+.. +.+++|.|.+|.+|++||+.... ..+++.++++..++.+..++ . -.+||||||||+
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~~~~-------~----~~~LSgGe~qrv 221 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENILDR-------D----ISELSGGELQRV 221 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchhhcC-------C----hhhCCHHHHHHH
Confidence 11122 44555567778889999996421 24567888888888654332 2 245899999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCC
Q 011281 389 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYG 453 (489)
Q Consensus 389 ~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G 453 (489)
+|||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999886558899999999999987 9999999873
No 360
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-34 Score=254.04 Aligned_cols=224 Identities=22% Similarity=0.383 Sum_probs=178.2
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE-----eCCCCChHH-
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI-----DISSIGLHD- 315 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~-----~~~~~~~~~- 315 (489)
-++++++|..|.+. .-.+||||++.|||..+|||+||||||||+++|++-+.|+.|+|.++-. ++-.++..+
T Consensus 6 LL~V~~lsk~Yg~~--~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 6 LLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred ceeehhhhhhhCCC--cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 48899999999765 3689999999999999999999999999999999999999999998653 333333222
Q ss_pred ---hhccceEEcCCCc--cC-ccchhhhcC---C--CCC-C--cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCC
Q 011281 316 ---LRSRLSIIPQDPT--MF-EGSVHNNLD---P--LEE-Y--ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 381 (489)
Q Consensus 316 ---~r~~i~~v~Q~~~--lf-~~ti~~Ni~---~--~~~-~--~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LS 381 (489)
+|..-|+|.|+|- +- .-|--.||. + +.. + -.++..+.++++.++ -+++.+....+|
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~----------~~RiDD~PrtFS 153 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID----------LDRIDDLPRTFS 153 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccC----------cccccCcccccc
Confidence 4567899999994 21 113334542 1 111 1 012223333333332 246667778889
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEe
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEF 458 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 458 (489)
||++||+.|||-|...|+++++||||.+||...+.++.+.++.+.. +-.+++|||++..++. +||.+||++|+++|.
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999999999999999999999999999999999999987653 6799999999999987 999999999999999
Q ss_pred cChhHHhhcCCChHHHHHH
Q 011281 459 DSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 459 g~~~el~~~~~~~~~~l~~ 477 (489)
|-.+.++..++.+|.+++-
T Consensus 234 GLTDrvLDDP~hPYTQLLV 252 (258)
T COG4107 234 GLTDRVLDDPHHPYTQLLV 252 (258)
T ss_pred ccccccccCCCCchHHHHH
Confidence 9999999999999988864
No 361
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.4e-35 Score=341.79 Aligned_cols=198 Identities=24% Similarity=0.256 Sum_probs=165.0
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCChHHhhccceEEcCCCccCc-cc
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GS 333 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~t 333 (489)
.+|+|+|+.+++||+++|+||||||||||+|+|+|.++|+ +|+|.+||+++.+.. .|+.++||+|++.+|+ .|
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcCc
Confidence 4899999999999999999999999999999999999998 999999999986653 3678999999988776 49
Q ss_pred hhhhcCCCC-------------CCcHH----------H------------------HHHHHHHcCCcHHHHhccccccch
Q 011281 334 VHNNLDPLE-------------EYADE----------E------------------IWEALDKCQLGNEVRKNEGKLESR 372 (489)
Q Consensus 334 i~~Ni~~~~-------------~~~~~----------~------------------~~~~~~~~~l~~~i~~l~~gldt~ 372 (489)
++||+.+.. +.+.+ + +..+++..|| .+-.||.
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL-------~~~~~t~ 328 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGL-------DICKDTI 328 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCC-------ccccCce
Confidence 999997531 00111 1 1223333333 3446788
Q ss_pred hhcC-CCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCch-h-hhhcCEE
Q 011281 373 VTEN-GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRIT-S-VIDSDMV 447 (489)
Q Consensus 373 vge~-G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~-~-~~~~d~i 447 (489)
||+. -..||||||||++|||+++.+|++++|||||++||+.+...+.+.|++.. .++|+|+++|++. . ...+|+|
T Consensus 329 vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~v 408 (1470)
T PLN03140 329 VGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDI 408 (1470)
T ss_pred eCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheE
Confidence 8764 35799999999999999999999999999999999999999999998864 4789999999963 4 4459999
Q ss_pred EEEeCCEEEEecChhHHh
Q 011281 448 LLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 448 ~~l~~G~i~~~g~~~el~ 465 (489)
++|++|+++..|+.+++.
T Consensus 409 ilL~~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 409 ILLSEGQIVYQGPRDHIL 426 (1470)
T ss_pred EEeeCceEEEeCCHHHHH
Confidence 999999999999999886
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=4.8e-34 Score=301.28 Aligned_cols=207 Identities=26% Similarity=0.326 Sum_probs=163.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++|++++|++ +++++|+||++.+|+++||||+||||||||+|+|+|...|++|+|...+. -.++
T Consensus 3 ~i~~~~ls~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 3 MITLENLSLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred eEEEeeeEEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 4889999999954 35999999999999999999999999999999999999999999998651 2699
Q ss_pred EEcCCCccCcc-chhhhcCCCCCCc---HHHHHHH------------------HHHcCC---cHHHHhccccc-----cc
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLEEYA---DEEIWEA------------------LDKCQL---GNEVRKNEGKL-----ES 371 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~~~~---~~~~~~~------------------~~~~~l---~~~i~~l~~gl-----dt 371 (489)
|++|++.+.+. |+.+.+..+...- ..+++++ .+..+- ...+...-.|+ ++
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~ 149 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDR 149 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccC
Confidence 99999999875 9999876532100 0111111 111110 11111111122 33
Q ss_pred hhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEE
Q 011281 372 RVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLL 450 (489)
Q Consensus 372 ~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l 450 (489)
++ .+||||||.|++|||||+.+|++|||||||++||.++-.-+.+.|.++ ++ |+|+|||+-.++.. |++|+-+
T Consensus 150 ~~----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 150 PV----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred ch----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 44 459999999999999999999999999999999999999999999865 45 99999999999998 9999999
Q ss_pred eCCEEE-EecChhHHhhc
Q 011281 451 SYGLIE-EFDSPTRLLEN 467 (489)
Q Consensus 451 ~~G~i~-~~g~~~el~~~ 467 (489)
+.|++. ..|+++..++.
T Consensus 224 d~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 224 DRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred cCCceeEecCCHHHHHHH
Confidence 999875 68899888765
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.5e-34 Score=313.23 Aligned_cols=222 Identities=16% Similarity=0.163 Sum_probs=161.8
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCC---CCCCceEEECCEeCCCCC--h--
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV---EPTAGLIAIDGIDISSIG--L-- 313 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~---~~~~G~i~~~g~~~~~~~--~-- 313 (489)
..|+++|++++|++. .+|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++++...+ .
T Consensus 176 ~~I~i~nls~~y~~~--~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 176 KDIHMENFSISVGGR--DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eeEEEceEEEEeCCC--EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 459999999999643 4999999999999999999999999999999999864 588999987666532211 1
Q ss_pred ----------HHhhccceEEcCCCccCccchhhhcCCC--CCCc----HHHHHHHHHHcCCcH------HHHhccc--cc
Q 011281 314 ----------HDLRSRLSIIPQDPTMFEGSVHNNLDPL--EEYA----DEEIWEALDKCQLGN------EVRKNEG--KL 369 (489)
Q Consensus 314 ----------~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~--~~~~----~~~~~~~~~~~~l~~------~i~~l~~--gl 369 (489)
..+++.+++++|++.+...+..+|.... ...+ .+++.++++..++.+ -+...-. |+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 1134568899998765433444443211 0111 123333333332211 0000000 11
Q ss_pred c-chhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEE
Q 011281 370 E-SRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV 447 (489)
Q Consensus 370 d-t~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i 447 (489)
+ ......-..||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+...+.. ||+|
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i 411 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDI 411 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEE
Confidence 1 0111223569999999999999999999999999999999999999999999876 6799999999999987 9999
Q ss_pred EEEeCCEEE-EecChhHHhh
Q 011281 448 LLLSYGLIE-EFDSPTRLLE 466 (489)
Q Consensus 448 ~~l~~G~i~-~~g~~~el~~ 466 (489)
++|++|+++ ..|++++...
T Consensus 412 ~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 412 LHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred EEEECCEEEEeCCCHHHHHH
Confidence 999999996 6888876654
No 364
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=1.6e-34 Score=255.48 Aligned_cols=136 Identities=41% Similarity=0.662 Sum_probs=125.8
Q ss_pred eeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCcc-chhhhc
Q 011281 260 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNL 338 (489)
Q Consensus 260 l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni 338 (489)
|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+....++.++|++|++.+|++ |+++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999999999998888899999999999999987 69999
Q ss_pred CCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCC
Q 011281 339 DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 408 (489)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts 408 (489)
..+++++++++.+++.+ ..++.++.....||||||||++||||++++|+++|||||||
T Consensus 80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 45678899999988766 35677788888999999999999999999999999999997
No 365
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7e-33 Score=299.91 Aligned_cols=216 Identities=25% Similarity=0.305 Sum_probs=185.8
Q ss_pred CccEEEEEEEEEECCC---CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCceEEECCEeCCCCCh
Q 011281 240 QGEVDIHGLQVRYAPH---LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP---TAGLIAIDGIDISSIGL 313 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~---~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~---~~G~i~~~g~~~~~~~~ 313 (489)
...+.++|+++..++. .+.+|+|||.++++||..||.||||||||||+++|+|..++ .+|+|++||++. +.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~---~~ 99 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR---DS 99 (613)
T ss_pred cceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC---ch
Confidence 3468999999988765 35699999999999999999999999999999999999874 799999999543 55
Q ss_pred HHhhccceEEcCCCccCcc-chhhhcCCC------CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhc-CCCCCC
Q 011281 314 HDLRSRLSIIPQDPTMFEG-SVHNNLDPL------EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTE-NGENWS 381 (489)
Q Consensus 314 ~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~------~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge-~G~~LS 381 (489)
+.+++..|||.||..+++. ||+|++.+. +..+ +++++++++..||.+- -||.||. +...+|
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~-------~~t~ig~~~~rgiS 172 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC-------ADTLIGNPGIRGLS 172 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh-------ccceecCCCCCccc
Confidence 7789999999999999875 999998652 2222 4568888898888743 3677764 335799
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchh--hhhcCEEEEEeCCEEEEe
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS--VIDSDMVLLLSYGLIEEF 458 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~~G~i~~~ 458 (489)
||||+|+++|.-+++||+||+||||||+||+.+..++.+.|+++. +|+|||+.=|+++. ...-|++++|.+|+++..
T Consensus 173 GGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~ 252 (613)
T KOG0061|consen 173 GGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYS 252 (613)
T ss_pred cchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEe
Confidence 999999999999999999999999999999999999999998864 68999999999874 344899999999999999
Q ss_pred cChhHHh
Q 011281 459 DSPTRLL 465 (489)
Q Consensus 459 g~~~el~ 465 (489)
|+++++.
T Consensus 253 G~~~~~~ 259 (613)
T KOG0061|consen 253 GSPRELL 259 (613)
T ss_pred cCHHHHH
Confidence 9998775
No 366
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-33 Score=250.59 Aligned_cols=187 Identities=23% Similarity=0.333 Sum_probs=158.5
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
++.+|+++.-+. ...+.++||++.+||.+-|.||||||||||+++|+|+.+|++|+|.++|.+++.. +++.++.+-|
T Consensus 3 L~a~~L~~~R~e--~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~-~~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERGE--RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV-RESYHQALLY 79 (209)
T ss_pred chhhhhhhccCc--ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc-hhhHHHHHHH
Confidence 455677666543 3589999999999999999999999999999999999999999999999998765 3446788889
Q ss_pred EcCCCccCc-cchhhhcCCCC----CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 323 IPQDPTMFE-GSVHNNLDPLE----EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 323 v~Q~~~lf~-~ti~~Ni~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
+...+-+=. -|++||+.|.. ..+.+.+++|+..+||..+. .+|.+ +||.|||+|+||||.++..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~-dlp~~----------~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE-DLPVG----------QLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccc-ccchh----------hcchhHHHHHHHHHHHcCC
Confidence 988887754 59999998853 35678999999999998753 34433 4999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID 443 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ 443 (489)
+|++||||||++||.+....+-..+..+. +|..||..||..-.+..
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 99999999999999999999988887654 67899999999766543
No 367
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=262.83 Aligned_cols=205 Identities=24% Similarity=0.328 Sum_probs=155.1
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEc-CCCccC-ccchh
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP-QDPTMF-EGSVH 335 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~lf-~~ti~ 335 (489)
++..|+||+|++|++++++|||||||||++|+|.|+..|++|.|.++|.+-.+-. ++.-+++++|. |...+. .--+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~-~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRR-EEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhH-HHHHHHHHHHhhhhheeeeechhh
Confidence 4899999999999999999999999999999999999999999999998654422 33333454433 322211 11122
Q ss_pred hhcCCC---CCCcHHHHH----HHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCC
Q 011281 336 NNLDPL---EEYADEEIW----EALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 408 (489)
Q Consensus 336 ~Ni~~~---~~~~~~~~~----~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts 408 (489)
+-+... -+.+++++. ...+..++ +..+...-..||-|||.|..||.||+++|+||+|||||=
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl-----------~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDL-----------EGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcc-----------hhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 222111 123333333 33333333 333444456789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 011281 409 SVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475 (489)
Q Consensus 409 ~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l 475 (489)
+||...+..|.+.++... .+.||++.||.++.+.. ||||++++.|+++..|+.++|.+. -+.++++
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~-f~~~k~~ 254 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ-FGPYKEF 254 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH-hCCceEE
Confidence 999999999999998753 57899999999999987 999999999999999999999876 4455443
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=6.2e-32 Score=285.27 Aligned_cols=203 Identities=23% Similarity=0.328 Sum_probs=173.9
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
..-++++|+++.|++. +++++++||.|.+|+++||+||||+|||||+|+|+|...|.+|+|.+.-. + +
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v----------~ 386 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V----------K 386 (530)
T ss_pred CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------E
Confidence 3469999999999765 46899999999999999999999999999999999999999999987541 2 6
Q ss_pred ceEEcCCC-ccCc-cchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 320 LSIIPQDP-TMFE-GSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 320 i~~v~Q~~-~lf~-~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
+||.+|+. .+++ .|+.|++.-.. +..+.+++..|..+++...-.. ++| ..||||||-|+.||+.++.
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~------~~v----~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQE------KPV----GVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHh------Cch----hhcCHhHHHHHHHHHHhcc
Confidence 99999987 4444 48999986543 4447889999999998765432 223 4599999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEEe-cChhHHhhc
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEEF-DSPTRLLEN 467 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~-g~~~el~~~ 467 (489)
+|.+|||||||++||.++...+.++|.++ ..|||+|||+-.++.. |++|+.+++ ++... |++++..+.
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 99999999999999999999999999876 4699999999999998 999999999 77664 888776654
No 369
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=9.1e-32 Score=258.19 Aligned_cols=188 Identities=20% Similarity=0.189 Sum_probs=126.4
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCceEEECC-------EeC---CCCChHHhhc-cceEEc
Q 011281 257 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLI-QTLFRIVEPTAGLIAIDG-------IDI---SSIGLHDLRS-RLSIIP 324 (489)
Q Consensus 257 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~-~~l~g~~~~~~G~i~~~g-------~~~---~~~~~~~~r~-~i~~v~ 324 (489)
..+|+++||++++||+++|+||||||||||+ ..+. .+|++.+.+ ..+ .......++. ..++..
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 3589999999999999999999999999996 4432 134332210 000 0000011111 233444
Q ss_pred CCCcc-Cc--cchh---hhcCC----CCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 325 QDPTM-FE--GSVH---NNLDP----LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 325 Q~~~l-f~--~ti~---~Ni~~----~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
|++.. ++ .++. +...+ .......+..+.++.+++.+. ........||||||||++||||+
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~laral 152 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYL----------TLSRSAPTLSGGEAQRIRLATQI 152 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcc----------cccCccCcCCHHHHHHHHHHHHH
Confidence 44321 11 1221 11111 011111222345555555331 23445567999999999999999
Q ss_pred ccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEE------eCCEEEEec
Q 011281 395 LKKS--KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGLIEEFD 459 (489)
Q Consensus 395 l~~~--~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g 459 (489)
+.+| +++||||||++||+.+...+.+.+.+.. .+.|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 153 ~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 153 GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 9998 5999999999999999999999998754 578999999999998889999999 999999986
No 370
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.97 E-value=2.4e-29 Score=254.12 Aligned_cols=413 Identities=18% Similarity=0.178 Sum_probs=254.6
Q ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011281 22 LNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVF--IAF--IPVIAISIWYQQYYLPSARELSRLVGVSK 97 (489)
Q Consensus 22 l~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~--l~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (489)
=+.+|+|+..+.+.+.+....+.-.++-++.+...+...+-... .+. ..+..+...+-+.+.++..+.........
T Consensus 220 D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~ 299 (728)
T KOG0064|consen 220 DNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARK 299 (728)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhc
Confidence 36789999998887777777766665544444333332222221 111 11112222334555566666666666677
Q ss_pred chHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Q 011281 98 APVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIFVFSLFFIISV------- 170 (489)
Q Consensus 98 ~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 170 (489)
+.+...-+..+++.++|-.|+-.+...++..+..+.....-........|....-+++.--......+++..+
T Consensus 300 g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~ 379 (728)
T KOG0064|consen 300 GYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTL 379 (728)
T ss_pred cHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeeccc
Confidence 8888888899999999999987776666655554443222111222233433333332211110000000001
Q ss_pred -cCCcc--c-HHH--HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCCCCcccc-----
Q 011281 171 -PEGVV--D-PAI--AGLAVTF---GLNLNMLQASLISKLCNLENRIISVERILQYMCI-------PNEPPLVIE----- 229 (489)
Q Consensus 171 -~~g~i--~-~~~--~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~-------~~~~~~~~~----- 229 (489)
..+.. + .+. .-.+.+- +.........++....++.+-..--.|+++.+.. ..+...+.+
T Consensus 380 ~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~ 459 (728)
T KOG0064|consen 380 ASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSR 459 (728)
T ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhcc
Confidence 01111 0 000 0011111 0111111112233333333333334454433210 000000000
Q ss_pred ------cCCCCC---CCCCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCce
Q 011281 230 ------ASRPNC---SWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 300 (489)
Q Consensus 230 ------~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 300 (489)
...+-. .......|.++|+-.--|..+ .+...++|+|++|-++.|.||||||||+|.+.|.|+||...|.
T Consensus 460 ~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~-vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~ 538 (728)
T KOG0064|consen 460 TIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGD-VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGL 538 (728)
T ss_pred CccccccCCcCCccchhhcccceEEecCceeccCcc-eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCe
Confidence 000000 011234689999987777654 5789999999999999999999999999999999999998776
Q ss_pred EEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCC--------CCCcHHHHHHHHHHcCCcHHHHhccccccch
Q 011281 301 IAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPL--------EEYADEEIWEALDKCQLGNEVRKNEGKLESR 372 (489)
Q Consensus 301 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~--------~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~ 372 (489)
..+-- +.+|-|+||.|+.=-||+||.|-+. +.++|.+++++++.+.|++.+ +...|+|.
T Consensus 539 L~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~-qr~~g~da- 605 (728)
T KOG0064|consen 539 LSIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHIL-QREGGWDA- 605 (728)
T ss_pred eecCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHH-HhccChhh-
Confidence 65421 3359999999998888999999763 346789999999999997544 45667654
Q ss_pred hhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEE
Q 011281 373 VTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL 450 (489)
Q Consensus 373 vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 450 (489)
+.+.-.-||||+|||+++||.++++|+.-+|||+|||+.++.|..+.++.++. |-+.|.||||++..+.-...+-.
T Consensus 606 ~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 606 VRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred hccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 34445569999999999999999999999999999999999999999999875 78999999999988765555544
No 371
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=6.4e-31 Score=255.61 Aligned_cols=193 Identities=23% Similarity=0.308 Sum_probs=140.3
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHh-----c-CC----CCCCc-----------eEEECCEeCCCCChH---
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF-----R-IV----EPTAG-----------LIAIDGIDISSIGLH--- 314 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~-----g-~~----~~~~G-----------~i~~~g~~~~~~~~~--- 314 (489)
.|+|++++|+.|..++|+|+||||||||++.++ + +. .|..+ -|.+|..++..-...
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 699999999999999999999999999998663 1 11 13222 355565555331110
Q ss_pred -------Hhhc----------------cceEEcCCCccC-ccchhhhcCCCCCC-cHHHHHHHHHHcCCcHHHHhccccc
Q 011281 315 -------DLRS----------------RLSIIPQDPTMF-EGSVHNNLDPLEEY-ADEEIWEALDKCQLGNEVRKNEGKL 369 (489)
Q Consensus 315 -------~~r~----------------~i~~v~Q~~~lf-~~ti~~Ni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~gl 369 (489)
.+|+ .+.|..++...+ ..|+.||+.+.... ..++..++++.++|.+.
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l-------- 161 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYI-------- 161 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchh--------
Confidence 0111 133344443322 33666666553221 12345556666655432
Q ss_pred cchhhcCCCCCCchHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcC
Q 011281 370 ESRVTENGENWSMGQRQLVCLARVLLKK---SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSD 445 (489)
Q Consensus 370 dt~vge~G~~LSgGq~Qrl~laRall~~---~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d 445 (489)
.+++...+|||||+||++|||+|+++ |+++||||||++||+...+.+.+.+.++. .+.|+|+|+|+++.+..||
T Consensus 162 --~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD 239 (261)
T cd03271 162 --KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCAD 239 (261)
T ss_pred --hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCC
Confidence 34566778999999999999999996 79999999999999999999999998765 4789999999999999999
Q ss_pred EEEEE------eCCEEEEecCh
Q 011281 446 MVLLL------SYGLIEEFDSP 461 (489)
Q Consensus 446 ~i~~l------~~G~i~~~g~~ 461 (489)
+|++| ++|+|+++|++
T Consensus 240 ~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 240 WIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEEEecCCcCCCCCEEEEeCCC
Confidence 99999 89999999974
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=4.3e-31 Score=247.98 Aligned_cols=164 Identities=22% Similarity=0.261 Sum_probs=132.2
Q ss_pred eeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---------ceEEECCEeCCCCChHHhhccceEEcCCCccCc
Q 011281 261 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA---------GLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE 331 (489)
Q Consensus 261 ~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~---------G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~ 331 (489)
+++++++++| +++|+||||||||||+++|+|+.+|.. |++.++|.+... ...+..+++|+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 5789999999 999999999999999999999986653 467788876643 22457899999999877
Q ss_pred cchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc----cCCCEEEEeCCC
Q 011281 332 GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL----KKSKVLVLDEAT 407 (489)
Q Consensus 332 ~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall----~~~~illlDEpt 407 (489)
+. ....+++.++++. ++-.+. ....||||||||++|||+++ ++|++++|||||
T Consensus 89 --------~~-~~~~~~~~~~l~~----------~~~~~~----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 --------YS-IISQGDVSEIIEA----------PGKKVQ----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred --------ee-EEehhhHHHHHhC----------CCcccc----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 11 1124456666665 111222 23468999999999999986 577999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeC
Q 011281 408 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 452 (489)
Q Consensus 408 s~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 452 (489)
++||+.....+.+.|.+..++.|+|+|||+++.+..||+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 999999999999999987667899999999999888999999854
No 373
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=1.6e-30 Score=292.97 Aligned_cols=215 Identities=21% Similarity=0.329 Sum_probs=190.8
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC-ChHHhhcc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI-GLHDLRSR 319 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~-~~~~~r~~ 319 (489)
..+..+|++..|+.... |.+++|+.+++||+.++.|||||||||+++++.|..+|++|++.++|.++..- +..+.+++
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 46889999999987654 89999999999999999999999999999999999999999999999999754 44468999
Q ss_pred ceEEcCCCccCcc-chhhhcCCC---CCC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 320 LSIIPQDPTMFEG-SVHNNLDPL---EEY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 320 i~~v~Q~~~lf~~-ti~~Ni~~~---~~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
+||.||+..+++. |.||++.+. +.. -++.+++.++.++|.++..+. ..++|||+|+||++|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~-----------~~~ySgG~kRkLs~a 710 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ-----------VRTYSGGNKRRLSFA 710 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccc-----------hhhCCCcchhhHHHH
Confidence 9999999999875 999999653 221 234578889999998876543 245799999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC-ceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSD-CTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~-~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
-|++.+|++++|||||+|+||.+++.+++.+.+.+++ +.+|+.||.+++.+. |||+.+|-+|++.-.|+.++|.++
T Consensus 711 ialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 711 IALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 9999999999999999999999999999999987764 499999999999998 999999999999999999999865
No 374
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.9e-30 Score=226.85 Aligned_cols=200 Identities=23% Similarity=0.280 Sum_probs=153.0
Q ss_pred EEEEEEEEEEC-----CCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE----eCCCCCh
Q 011281 243 VDIHGLQVRYA-----PHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI----DISSIGL 313 (489)
Q Consensus 243 i~~~~v~~~y~-----~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~----~~~~~~~ 313 (489)
+.++||+.+|. +-.-++++|+||+++.||++++-||||||||||+++|-+-|.|++|+|.+.-. |+-...+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 66777766663 11235899999999999999999999999999999999999999999998433 2222222
Q ss_pred H---Hh-hccceEEcCCCccCcc-c----hhhhcC-CCC--CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCC
Q 011281 314 H---DL-RSRLSIIPQDPTMFEG-S----VHNNLD-PLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 381 (489)
Q Consensus 314 ~---~~-r~~i~~v~Q~~~lf~~-t----i~~Ni~-~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LS 381 (489)
. ++ |+.||||+|---..+. + +.|-+. .+- +...++....+.+.++.+-+-.|+ ..++|
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaTFS 154 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PATFS 154 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------CcccC
Confidence 2 23 4569999995443332 1 222221 121 222345666777888777766665 35689
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeC
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSY 452 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~ 452 (489)
|||+||+.|||.+.-|-|||+|||||++||..+++.+.+.|...+ .|..+|=|=|+-+.-.. |||++-+..
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999998754 68899999999887776 999987743
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=7.1e-30 Score=247.91 Aligned_cols=192 Identities=19% Similarity=0.251 Sum_probs=135.3
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcC----------------CCCCCc------
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI----------------VEPTAG------ 299 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~----------------~~~~~G------ 299 (489)
.|+++|. .+|.+. .++++++ |++++|+||||||||||+++|+++ ..+.+|
T Consensus 3 ~i~~~nf-ksy~~~--~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 3 QVIIQGF-KSYKDQ--TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEEeCc-cCcccC--cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 3566654 235432 3677775 899999999999999999999844 444444
Q ss_pred --eEEECCEeCCC-C--ChHHhhccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHH--hccccc---
Q 011281 300 --LIAIDGIDISS-I--GLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVR--KNEGKL--- 369 (489)
Q Consensus 300 --~i~~~g~~~~~-~--~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~--~l~~gl--- 369 (489)
+|.+++.+-.. . ....+++.+++++|++.++. ...+.+++...+..+++...-. ..+.|.
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~----------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~ 144 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK----------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKINS 144 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC----------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH
Confidence 44444421110 0 11234555666666655543 1345677778888877754210 012222
Q ss_pred ----cchhhcCCCCCCchHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhh
Q 011281 370 ----ESRVTENGENWSMGQRQLVCLARVLL----KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV 441 (489)
Q Consensus 370 ----dt~vge~G~~LSgGq~Qrl~laRall----~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 441 (489)
.....+.+..||||||||++||||++ ++|+++||||||++||+.+.+.+++.+.++.++.|+|+++|+.+..
T Consensus 145 l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~ 224 (243)
T cd03272 145 LTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELL 224 (243)
T ss_pred hhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 22335677889999999999999996 4689999999999999999999999998876678899999998877
Q ss_pred hhcCEEEEEe
Q 011281 442 IDSDMVLLLS 451 (489)
Q Consensus 442 ~~~d~i~~l~ 451 (489)
..||+|++|+
T Consensus 225 ~~~d~i~~l~ 234 (243)
T cd03272 225 EVADKFYGVK 234 (243)
T ss_pred hhCCEEEEEE
Confidence 7799999985
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=2.1e-29 Score=239.76 Aligned_cols=191 Identities=14% Similarity=0.068 Sum_probs=140.2
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEee-CCCEEEEECCCCCcHHHHHHHHhc-CCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFL-GGMKTGIVGRTGSGKSTLIQTLFR-IVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~-~g~~~~ivG~sGsGKSTl~~~l~g-~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.|+++|+. +|.+. ++++|+.. +|++++|+||||||||||+++|++ +|.+..+....+ .....+.....+..
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEE
Confidence 58889987 66432 46677654 589999999999999999999995 666665655543 12223333445667
Q ss_pred ceEEcCCCccCccchhhhcCCCCCCcHHHHHHHH--HHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc-
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEAL--DKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK- 396 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~--~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~- 396 (489)
|++++|++.- ...+.+.. ..+.+++.+.. +.. ++++.+.....+|||||+||++||||++.
T Consensus 78 v~~~f~~~~~----~~~~~r~~-gl~~~~~~~~~~l~~g-----------~l~~~l~~~~~~lS~G~~~r~~la~al~~~ 141 (213)
T cd03279 78 VSFTFQLGGK----KYRVERSR-GLDYDQFTRIVLLPQG-----------EFDRFLARPVSTLSGGETFLASLSLALALS 141 (213)
T ss_pred EEEEEEECCe----EEEEEEec-CCCHHHHHHhhhhhhc-----------chHHHhcCCccccCHHHHHHHHHHHHHHhH
Confidence 9999998732 22222222 33444444322 222 24455566677899999999999999984
Q ss_pred ---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEE
Q 011281 397 ---------KSKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVID-SDMVLLLSYGLI 455 (489)
Q Consensus 397 ---------~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i 455 (489)
+|+++||||||++||+.+.+.+.+.+.+..+ ++|+|+|||+++.+.. ||+++++++|.+
T Consensus 142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 5789999999999999999999999987754 7899999999998887 899999999854
No 377
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=2.8e-29 Score=221.62 Aligned_cols=207 Identities=20% Similarity=0.279 Sum_probs=173.3
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
+.++||...- -|-.+|.++..||++-+|||||||||||+..++|+. |.+|+|.++|.+++.++..++.++=+|
T Consensus 4 ~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 5667775332 367899999999999999999999999999999986 689999999999999999999888899
Q ss_pred EcCCC-ccCccchhhhcCCCCCC--cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc---
Q 011281 323 IPQDP-TMFEGSVHNNLDPLEEY--ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK--- 396 (489)
Q Consensus 323 v~Q~~-~lf~~ti~~Ni~~~~~~--~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~--- 396 (489)
+.|+- ..|..-|...+.+..+. -.+++.++++..+++|.+ +..-..|||||.||+-+|-..+.
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL-----------~Rs~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchh-----------hhhhhhcCcccceeeEEeEEEEEecC
Confidence 98864 46777899998876433 235677777777665543 34446789999999999998884
Q ss_pred --CC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCch-hhhhcCEEEEEeCCEEEEecChhHHhhc
Q 011281 397 --KS--KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRIT-SVIDSDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 397 --~~--~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~~~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|| ++|++|||.++||...+..+...+.... .|.+||+.+|+++ ++++||+++.++.|++..+|..+|++..
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 33 6899999999999999888888777654 6899999999997 7888999999999999999999999864
No 378
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.95 E-value=7.1e-29 Score=252.30 Aligned_cols=198 Identities=20% Similarity=0.313 Sum_probs=167.5
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+-+.++||+|.|+++. .++++++|-|..++++++|||||||||||+|+++|...|..|.|.-.- ...
T Consensus 387 ~pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~-----------H~~ 454 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS-----------HNK 454 (614)
T ss_pred CCeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc-----------ccc
Confidence 34689999999998764 689999999999999999999999999999999999999999987433 234
Q ss_pred ceEEcCCCc---cCccchhhhcCC-CC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 320 LSIIPQDPT---MFEGSVHNNLDP-LE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 320 i~~v~Q~~~---lf~~ti~~Ni~~-~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
+++..|+.. -++.|.-|++.. +. ....++++.++.++||....+..|- .+||+|||.||.+||.+
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLA 524 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHH
Confidence 555556432 345577777753 23 4677899999999999977766553 45999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEE-ecCh
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEE-FDSP 461 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~-~g~~ 461 (489)
++.|.+|+|||||++||.++-..+.++|..+ ..+||+|||+...+.+ +++|.++++|.+.. .|.+
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 9999999999999999999999999999875 4699999999999998 99999999999874 5554
No 379
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.4e-27 Score=244.84 Aligned_cols=213 Identities=22% Similarity=0.315 Sum_probs=167.4
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH-Hhhcc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSR 319 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 319 (489)
..++++|++.. ..++|+||++++||+++|.|=-|||+|-++++|.|..++.+|+|.+||+++.--++. .++..
T Consensus 262 ~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 262 PVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred cEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 35778887632 158899999999999999999999999999999999999999999999999877655 57888
Q ss_pred ceEEcCCC---ccCc-cchhhhcCCC--CCCcHH-HHHHHHHHcCCcHHHHhcc---ccccchhhcCCCCCCchHHHHHH
Q 011281 320 LSIIPQDP---TMFE-GSVHNNLDPL--EEYADE-EIWEALDKCQLGNEVRKNE---GKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 320 i~~v~Q~~---~lf~-~ti~~Ni~~~--~~~~~~-~~~~~~~~~~l~~~i~~l~---~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
|+|||.|- -+|. .+|++|+.+. ...... -+...-++.-..+++.++. ...+.++ .+||||.+||+.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQKVv 411 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKVV 411 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhhHH
Confidence 99999974 3554 5999999764 110000 1111222222223444432 2333444 469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~e 463 (489)
|||.|..+|++|||||||-++|.-+...|++.|.++. +|++||+||-.+.++.. ||||+||.+|+|+..=+.++
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999998764 68999999999998875 99999999999997544443
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=9.6e-28 Score=226.57 Aligned_cols=164 Identities=23% Similarity=0.255 Sum_probs=128.0
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHH----hcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCC-----ccCcc-
Q 011281 263 LTCTFLGGMKTGIVGRTGSGKSTLIQTL----FRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP-----TMFEG- 332 (489)
Q Consensus 263 i~l~i~~g~~~~ivG~sGsGKSTl~~~l----~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-----~lf~~- 332 (489)
.++++.+| +++|+||||||||||+++| .|..+|..|.+..+...+. ....+..+++++|++ .++..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 9999999999999999999 4998888887762222222 223466899999998 33332
Q ss_pred chhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH------HHHHHHhccCCCEEEEeCC
Q 011281 333 SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL------VCLARVLLKKSKVLVLDEA 406 (489)
Q Consensus 333 ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr------l~laRall~~~~illlDEp 406 (489)
|+.+|+.+.. .+++.+.+ .+....||+||+|| +++|||++.+|++++||||
T Consensus 92 ~~~~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP 148 (204)
T cd03240 92 AILENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEP 148 (204)
T ss_pred hHhhceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 8888886642 23322222 44456799999996 7999999999999999999
Q ss_pred CCCCCHHHHH-HHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCC
Q 011281 407 TASVDTATDN-LIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYG 453 (489)
Q Consensus 407 ts~lD~~~~~-~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G 453 (489)
|++||+.... .+.+.+.+..+ ++|+|+|||+++.+..||+|++|++.
T Consensus 149 ~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 149 TTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred ccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 9999999998 99999987654 68999999999988889999999653
No 381
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1.2e-27 Score=233.54 Aligned_cols=181 Identities=19% Similarity=0.251 Sum_probs=137.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCC-CceEEECCE-eCCCCC--hHHhhccceEEcCCCc---------cC-ccchh
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGI-DISSIG--LHDLRSRLSIIPQDPT---------MF-EGSVH 335 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~~~~-~G~i~~~g~-~~~~~~--~~~~r~~i~~v~Q~~~---------lf-~~ti~ 335 (489)
..+++||||||||||||+++|++++.|. .|++...|. ++-... ....+..+++++|++. +. .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999999886 568888776 331111 1122458999999862 22 23788
Q ss_pred hhcCCCC---------CCcHHHHHHHHHHcCCcH----------HHHhccccccchhhcCCCCCCchHHHHHHHHHHhc-
Q 011281 336 NNLDPLE---------EYADEEIWEALDKCQLGN----------EVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL- 395 (489)
Q Consensus 336 ~Ni~~~~---------~~~~~~~~~~~~~~~l~~----------~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall- 395 (489)
+|+..+. ....+++.++++.+++.- .+.++-+. ..........||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 8875421 224578889999998851 01111101 12233456679999999999999997
Q ss_pred ---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEe
Q 011281 396 ---KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLS 451 (489)
Q Consensus 396 ---~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 451 (489)
.+|+++++||||++||+.+.+.+.+.+++..++.|+|+|||+.+.+..||+++-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 68899999999999999999999999988777889999999988888899998774
No 382
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=6.8e-28 Score=228.80 Aligned_cols=181 Identities=20% Similarity=0.247 Sum_probs=134.8
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhh-ccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR-SRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~i 320 (489)
.|+++|.- +|.+ ..+++++++ ++++|+|||||||||++++|. .++|.+. ...| +++
T Consensus 5 ~l~l~nfk-~~~~--~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYAG--EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKKL 61 (212)
T ss_pred EEEEECcc-cCCC--CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhhH
Confidence 47778775 6653 348888887 899999999999999999997 2345333 2233 579
Q ss_pred eEEcCCCccCcc-chhhhcCCCCCCcHHHHHHHHHHc-------------CCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKC-------------QLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~-------------~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
++++|+..+++. |.++++.+......-+ .++.. +-...+..+|++.++.+ ..||+||||
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~----~~lS~G~~~ 134 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIIDKP---LLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI----SNLSGGEKT 134 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCCHH---HHHHCCcCCCCCceEEcCCcEEEeeccccccccch----hhcCHHHHH
Confidence 999999887765 7777765542211000 11000 11112334566666655 369999999
Q ss_pred HHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeC
Q 011281 387 LVCLARVLLK----KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 452 (489)
Q Consensus 387 rl~laRall~----~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 452 (489)
|++||||++. +|++++|||||++||+.+...+.+.+.++.++.|+|+|||+.+..+.||||++|..
T Consensus 135 r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 135 LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999999963 58999999999999999999999999988778899999999888878999999854
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.95 E-value=6.2e-27 Score=261.45 Aligned_cols=112 Identities=22% Similarity=0.273 Sum_probs=98.1
Q ss_pred cccc-hhhcCCCCCCchHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh
Q 011281 368 KLES-RVTENGENWSMGQRQLVCLARVLLKKS---KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVI 442 (489)
Q Consensus 368 gldt-~vge~G~~LSgGq~Qrl~laRall~~~---~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~ 442 (489)
|++. .++.....||||||||++|||+|+++| +++||||||++||+...+.+.+.|.++. +++|+|+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4543 367778899999999999999999999 9999999999999999999999998764 5789999999999998
Q ss_pred hcCEEEEE------eCCEEEEecChhHHhhcCCChHHHHHHHH
Q 011281 443 DSDMVLLL------SYGLIEEFDSPTRLLENKSSSFAQLVAEY 479 (489)
Q Consensus 443 ~~d~i~~l------~~G~i~~~g~~~el~~~~~~~~~~l~~~~ 479 (489)
.||+|++| ++|+|+..|+++++.+.+.+.-.+++...
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l~~~ 940 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYLKPV 940 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHHHHH
Confidence 89999999 79999999999999987655555555543
No 384
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=8.7e-27 Score=211.41 Aligned_cols=228 Identities=22% Similarity=0.326 Sum_probs=184.6
Q ss_pred EEEEEEEEEECC--CCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC----CCCceEEECCEeCCCCChHHh
Q 011281 243 VDIHGLQVRYAP--HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE----PTAGLIAIDGIDISSIGLHDL 316 (489)
Q Consensus 243 i~~~~v~~~y~~--~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~----~~~G~i~~~g~~~~~~~~~~~ 316 (489)
+.++|++..+.. +.-.+++++|+++..||+.++||+||||||-+.|.|+|... .+..+..+|++++-.+++++.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 456677666632 23347999999999999999999999999999999999864 455667789999989988887
Q ss_pred hc----cceEEcCCCccCcc---ch----hhhcCCC---C------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcC
Q 011281 317 RS----RLSIIPQDPTMFEG---SV----HNNLDPL---E------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTEN 376 (489)
Q Consensus 317 r~----~i~~v~Q~~~lf~~---ti----~~Ni~~~---~------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~ 376 (489)
|+ .|++++|+|.-+-+ +| -+||-.. . .+.+.+..+.+.++|++|.-+- ..+-
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDI--------M~SY 155 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDI--------MRSY 155 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHH--------HHhC
Confidence 65 57899999975533 33 3566321 1 2346778889999999875331 1122
Q ss_pred CCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCC
Q 011281 377 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYG 453 (489)
Q Consensus 377 G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G 453 (489)
...|..||-|++.||.|++.+|++||-||||+++|+.|..+|+..+.... .+.|+++++|++..+.. ||+|-||--|
T Consensus 156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235 (330)
T ss_pred cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence 34468899999999999999999999999999999999999999987654 46799999999999987 9999999999
Q ss_pred EEEEecChhHHhhcCCChHHHHHHH
Q 011281 454 LIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 454 ~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
+-+|.++.+++++.++.+|.+.+-.
T Consensus 236 Q~~ESa~~e~l~~~PhHPYTqALi~ 260 (330)
T COG4170 236 QTVESAPSEELVTMPHHPYTQALIR 260 (330)
T ss_pred ccccccchhHHhcCCCCchHHHHHH
Confidence 9999999999999988889766543
No 385
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=2.5e-26 Score=223.56 Aligned_cols=202 Identities=16% Similarity=0.173 Sum_probs=139.4
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEe--CC-----CCChH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGID--IS-----SIGLH 314 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~--~~-----~~~~~ 314 (489)
.|+++|. .+|.+. .++...++ +++|+||||||||||+.+|+++..+..|++..++.+ +. ..+..
T Consensus 3 ~i~l~nf-~~~~~~-------~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~ 73 (247)
T cd03275 3 RLELENF-KSYKGR-------HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSN 73 (247)
T ss_pred EEEEECc-cccCCC-------eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCc
Confidence 4677775 345321 12233344 999999999999999999999998877877654321 00 11111
Q ss_pred HhhccceEEcCCCc--cCccchhhhcC---C-CCCCcHHHHHHHHHHcCCcHHHHh--ccccccchhhcC---------C
Q 011281 315 DLRSRLSIIPQDPT--MFEGSVHNNLD---P-LEEYADEEIWEALDKCQLGNEVRK--NEGKLESRVTEN---------G 377 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~--lf~~ti~~Ni~---~-~~~~~~~~~~~~~~~~~l~~~i~~--l~~gldt~vge~---------G 377 (489)
...-.+.+..|++. ++..++++.-. + +...+.+++.+.++.+++..+... .++|.-+.+.+. .
T Consensus 74 ~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~ 153 (247)
T cd03275 74 SAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDM 153 (247)
T ss_pred eEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhH
Confidence 22334555555432 34444444321 1 234567788899999998643221 123332333222 2
Q ss_pred CCCCchHHHHHHHHHHhccC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhhcCEEEEEeC
Q 011281 378 ENWSMGQRQLVCLARVLLKK----SKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVIDSDMVLLLSY 452 (489)
Q Consensus 378 ~~LSgGq~Qrl~laRall~~----~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~~l~~ 452 (489)
..||||||||++||||++.+ |+++||||||++||+.....+.+.|.+..+ +.|+|+|||+.+.+..||++++|..
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 57999999999999999864 899999999999999999999999988754 7899999999999888999999864
No 386
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=9.9e-27 Score=257.84 Aligned_cols=199 Identities=23% Similarity=0.275 Sum_probs=170.5
Q ss_pred CCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCceEEECCEeCCCCChHHhhccceEEcCCC-ccCc
Q 011281 255 HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP-TMFE 331 (489)
Q Consensus 255 ~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-~lf~ 331 (489)
+.+..|+||+=-++||..+||+|+||||||||+++|+|--. ..+|+|++||.+..+ +..++.+|||.|++ |+-.
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44568999999999999999999999999999999999644 378999999998864 56889999999976 5656
Q ss_pred cchhhhcCCC------CCCcH----HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC-CE
Q 011281 332 GSVHNNLDPL------EEYAD----EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS-KV 400 (489)
Q Consensus 332 ~ti~~Ni~~~------~~~~~----~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~-~i 400 (489)
-||||-+.+. .+.++ +-++++++..+|.+.- |..||.-|..||..||.|+.||=-|+.|| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 6999998652 23333 3478899999988774 45688889999999999999999999999 88
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchh--hhhcCEEEEEe-CCEEEEecChhH
Q 011281 401 LVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITS--VIDSDMVLLLS-YGLIEEFDSPTR 463 (489)
Q Consensus 401 lllDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~-~G~i~~~g~~~e 463 (489)
|.|||||||||+.+...|++.++++. .|+||++.-|+++. .+.-|+++.|+ +|+.+..|+..+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 88999999999999999999998864 69999999999885 45689999995 568999998654
No 387
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=2.1e-25 Score=226.05 Aligned_cols=219 Identities=20% Similarity=0.330 Sum_probs=175.1
Q ss_pred CCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeC-CCCChHHh
Q 011281 238 PSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI-SSIGLHDL 316 (489)
Q Consensus 238 ~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~-~~~~~~~~ 316 (489)
|...-++++|++..-+.. ...+++|||++++||+++|.|-.|-|-+.|+.+|+|+.+|.+|+|.++|+++ ..+++.++
T Consensus 253 pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 253 PGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHH
Confidence 345579999999876443 3479999999999999999999999999999999999999999999999997 67788777
Q ss_pred hc-cceEEcCCCc----cCccchhhhcCCCCC----------CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCC
Q 011281 317 RS-RLSIIPQDPT----MFEGSVHNNLDPLEE----------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWS 381 (489)
Q Consensus 317 r~-~i~~v~Q~~~----lf~~ti~~Ni~~~~~----------~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LS 381 (489)
|+ .++|||.|.+ ..+.|+.||+.+..- ....++.+..+.. -+..+-.+.+.+++ ..+||
T Consensus 332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~l--i~~fdVr~~~~~~~----a~~LS 405 (501)
T COG3845 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAREL--IEEFDVRAPSPDAP----ARSLS 405 (501)
T ss_pred HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHH--HHHcCccCCCCCcc----hhhcC
Confidence 65 5999999874 456699999965321 1223333222211 00001112333333 35699
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 459 (489)
||+.||+-+||-+.++|++||..+||.+||....+.|++.|.+.+ .|+.|++||-+++.+.. ||||.||.+|+|+...
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~ 485 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccc
Confidence 999999999999999999999999999999999999999987654 68999999999999887 9999999999999888
Q ss_pred ChhH
Q 011281 460 SPTR 463 (489)
Q Consensus 460 ~~~e 463 (489)
++++
T Consensus 486 ~~~~ 489 (501)
T COG3845 486 PPEE 489 (501)
T ss_pred cccc
Confidence 7765
No 388
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=1.6e-25 Score=259.95 Aligned_cols=208 Identities=26% Similarity=0.235 Sum_probs=147.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHH---------HHhcCCCCCCc----e----EEEC
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQ---------TLFRIVEPTAG----L----IAID 304 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~---------~l~g~~~~~~G----~----i~~~ 304 (489)
.++++|++. ..|+|+||+|++||+++|+|+||||||||++ .+.|...+..+ . |.+|
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 478888752 2699999999999999999999999999999 66665433211 1 3344
Q ss_pred CEeCCCCCh----------HHhhc---------cc-----eEEcCC------------------C---------------
Q 011281 305 GIDISSIGL----------HDLRS---------RL-----SIIPQD------------------P--------------- 327 (489)
Q Consensus 305 g~~~~~~~~----------~~~r~---------~i-----~~v~Q~------------------~--------------- 327 (489)
-.++..-.. +++|+ .. .+.++. +
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 443322110 13331 11 122221 0
Q ss_pred -----ccCcc-chhhhcCCCCC-C-----cHHHHH---HHHHHcCCcHHHHhccccccch-hhcCCCCCCchHHHHHHHH
Q 011281 328 -----TMFEG-SVHNNLDPLEE-Y-----ADEEIW---EALDKCQLGNEVRKNEGKLESR-VTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 328 -----~lf~~-ti~~Ni~~~~~-~-----~~~~~~---~~~~~~~l~~~i~~l~~gldt~-vge~G~~LSgGq~Qrl~la 391 (489)
..|.+ ||.||+.+.-. + +.+++. ++++.+ |++.. .++...+|||||+||++||
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~v-----------GL~~l~l~q~~~tLSGGE~QRV~LA 821 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSL-----------GLDYLPLGRPLSSLSGGEIQRLKLA 821 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHc-----------CCcchhhcCccccCCHHHHHHHHHH
Confidence 12333 67777765411 0 112222 233333 44433 5666778999999999999
Q ss_pred HHhc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEEe------CCEEEEecCh
Q 011281 392 RVLL---KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLS------YGLIEEFDSP 461 (489)
Q Consensus 392 Rall---~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~------~G~i~~~g~~ 461 (489)
|||+ ++|++|||||||++||+.+.+.+.+.|.++. .+.|+|+|+|+++.++.||+|++|. +|+++..|++
T Consensus 822 raL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 822 YELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred HHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 9998 6999999999999999999999999998764 5789999999999997799999996 8999999999
Q ss_pred hHHhhc
Q 011281 462 TRLLEN 467 (489)
Q Consensus 462 ~el~~~ 467 (489)
+++...
T Consensus 902 eel~~~ 907 (1809)
T PRK00635 902 EELIHL 907 (1809)
T ss_pred HHHHhc
Confidence 999864
No 389
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.7e-25 Score=224.17 Aligned_cols=196 Identities=22% Similarity=0.298 Sum_probs=166.1
Q ss_pred CCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 239 SQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 239 ~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
.++.+++.+|+|.|+++.++.+.++++++..-+++++||++|+||||++|++.+-..|..|.+.+++ |.
T Consensus 359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 3457999999999988865689999999999999999999999999999999999999999998876 66
Q ss_pred cceEEcCCCccC-ccchh--hhc-CCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 319 RLSIIPQDPTMF-EGSVH--NNL-DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 319 ~i~~v~Q~~~lf-~~ti~--~Ni-~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
+|+|-.|...=| +-.+- +-. ...+..+++++++.|...|+.-.+...+ -..||||||-|+++|-+.
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACT 497 (582)
T ss_pred eecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHh
Confidence 899999976533 22221 111 1123448999999999998877665332 145899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEEE
Q 011281 395 LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIEE 457 (489)
Q Consensus 395 l~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 457 (489)
+.+|.+|+|||||+.||-++-..+-++|+.+ +..||+|||+.+.++. |+.+++.++|++..
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999876 4589999999999998 99999999999975
No 390
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=1e-24 Score=243.24 Aligned_cols=97 Identities=23% Similarity=0.301 Sum_probs=88.2
Q ss_pred cccc-hhhcCCCCCCchHHHHHHHHHHhcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh
Q 011281 368 KLES-RVTENGENWSMGQRQLVCLARVLLK---KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVI 442 (489)
Q Consensus 368 gldt-~vge~G~~LSgGq~Qrl~laRall~---~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~ 442 (489)
|++. .+++...+|||||+||++|||+|++ +|+++||||||++||+...+.+.+.|.++. ++.|+|+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5544 4677888999999999999999997 599999999999999999999999998765 5789999999999998
Q ss_pred hcCEEEEE------eCCEEEEecChhHH
Q 011281 443 DSDMVLLL------SYGLIEEFDSPTRL 464 (489)
Q Consensus 443 ~~d~i~~l------~~G~i~~~g~~~el 464 (489)
.||+|++| ++|+|+..|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999999876
No 391
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.3e-25 Score=219.62 Aligned_cols=198 Identities=21% Similarity=0.284 Sum_probs=158.7
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
+-+-++||+|.|++.. +.+++++|-|.--..+|||||||.|||||+++|.|-++|++|+..-|. |-+|
T Consensus 585 PvLGlH~VtFgy~gqk-pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred CeeecccccccCCCCC-chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 4578999999998765 589999999999999999999999999999999999999999886432 4478
Q ss_pred eEEcCCCc--cC-ccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 321 SIIPQDPT--MF-EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 321 ~~v~Q~~~--lf-~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
|+.-|... |- ..|-.|.++-.-+.+.++.++++-..||........ -..||||||-|+++|-.-++.
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTik----------ikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIK----------IKDLSGGQKARVALAELALGG 722 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEe----------eeecCCcchHHHHHHHHhcCC
Confidence 98888653 32 347777775444566778888888888765543221 245899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhc-CEEEEEeCCEEEE-ecChh
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDS-DMVLLLSYGLIEE-FDSPT 462 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~-d~i~~l~~G~i~~-~g~~~ 462 (489)
|+||||||||++||.++-..+-++|..+ +..||+|||+-..+... =..+|+++-.|-+ .|.++
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFe 787 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFE 787 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHH
Confidence 9999999999999999999999999876 45899999998888763 2455666555543 34443
No 392
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=2.1e-24 Score=219.83 Aligned_cols=222 Identities=18% Similarity=0.235 Sum_probs=143.9
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh---h
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL---R 317 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---r 317 (489)
..+.++|++++|.+. ..++|+.|++.+|++++|+|||||||||++++|.|-..|..-.+.+--.+ +++.+..+ +
T Consensus 74 ~dvk~~sls~s~~g~--~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~av~ 150 (614)
T KOG0927|consen 74 RDVKIESLSLSFHGV--ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQAVQ 150 (614)
T ss_pred ccceeeeeeeccCCc--eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHHHHH
Confidence 468999999999764 58999999999999999999999999999999999888855444321100 01111110 0
Q ss_pred ccceEEcCCCccCccchhhhcCCC-CCCcH---HHHHHHHHHcCCcHHHHh----c-cccc-cchhhcCCCCCCchHHHH
Q 011281 318 SRLSIIPQDPTMFEGSVHNNLDPL-EEYAD---EEIWEALDKCQLGNEVRK----N-EGKL-ESRVTENGENWSMGQRQL 387 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~~ti~~Ni~~~-~~~~~---~~~~~~~~~~~l~~~i~~----l-~~gl-dt~vge~G~~LSgGq~Qr 387 (489)
.-+..+.++..=.. --.|++.-. ++... +.+++-+...+.+.+-.+ + ..|. .......-.+||||||.|
T Consensus 151 ~v~~~~~~e~~rle-~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR 229 (614)
T KOG0927|consen 151 AVVMETDHERKRLE-YLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMR 229 (614)
T ss_pred HHhhhhHHHHHHHH-HHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHH
Confidence 00000000000000 000111100 00000 111111222221111000 0 0011 112233446789999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCE-EEEecChhHHh
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGL-IEEFDSPTRLL 465 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~-i~~~g~~~el~ 465 (489)
++|||||+.+|++|+|||||++||.++..-+-+.|.+.... ++++++|.-.++.. |.+|+-|++++ +...|+++...
T Consensus 230 ~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 230 AALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHHHHh
Confidence 99999999999999999999999999999999999876332 89999999999998 99999999999 67899999987
Q ss_pred hc
Q 011281 466 EN 467 (489)
Q Consensus 466 ~~ 467 (489)
..
T Consensus 309 ~t 310 (614)
T KOG0927|consen 309 KT 310 (614)
T ss_pred hH
Confidence 64
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.3e-24 Score=220.14 Aligned_cols=201 Identities=20% Similarity=0.299 Sum_probs=151.0
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
...|...+++.+|++. ..|++-++++..|.++++|||||+|||||+++|+. |.|..-..+ .++|..
T Consensus 78 ~~Di~~~~fdLa~G~k--~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGK--ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred ccceeeeeeeeeecch--hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 4568999999999754 58999999999999999999999999999999998 333322211 011111
Q ss_pred ceEEcCCCccCccchhhhcCCC-----CCCcHHHHHH-HHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPL-----EEYADEEIWE-ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~-----~~~~~~~~~~-~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
-....|+ .+-.+|-+.-+... ...+.+++.. ++.-.|..+..+..|- ..||||=|-|++||||
T Consensus 144 ~t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLARA 212 (582)
T KOG0062|consen 144 DTEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALARA 212 (582)
T ss_pred chHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHHH
Confidence 0001111 11122322222111 1114566666 8889999888877764 3599999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEE-EecChhHHhhc
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE-EFDSPTRLLEN 467 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~el~~~ 467 (489)
++.+||||+|||||+.||...-.-+.+.|..+ +.|+|+|||+-.++.. |.-|+.+++=++- ..|++++..+.
T Consensus 213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 99999999999999999999988888888876 3899999999999998 9999999988774 68999888765
No 394
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=4.5e-24 Score=200.54 Aligned_cols=172 Identities=19% Similarity=0.200 Sum_probs=117.6
Q ss_pred eeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC-ChHHhhccceEEcCCCccCccchhhhc
Q 011281 260 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI-GLHDLRSRLSIIPQDPTMFEGSVHNNL 338 (489)
Q Consensus 260 l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~-~~~~~r~~i~~v~Q~~~lf~~ti~~Ni 338 (489)
++++++++.+| +.+|+||||||||||+..|.-.+..... ....|..+.++ ....-...|.+++|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 45677777776 7799999999999999998754332211 01112211110 00111345777777766554 2
Q ss_pred CCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHH
Q 011281 339 DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL----LKKSKVLVLDEATASVDTAT 414 (489)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal----l~~~~illlDEpts~lD~~~ 414 (489)
.......+++.+.++. ... ..+...+||+|||||++||||+ +.+|+++||||||++||+.+
T Consensus 84 -~~~~~~~~~~~~~l~~----------~~~----~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~ 148 (198)
T cd03276 84 -PLCVLSQDMARSFLTS----------NKA----AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN 148 (198)
T ss_pred -cCCHHHHHHHHHHhcc----------ccc----cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH
Confidence 1111122344444443 111 2233457999999999999999 69999999999999999999
Q ss_pred HHHHHHHHHHhcC----CceEEEEecCchhhhhcCEEEEEeCCE
Q 011281 415 DNLIQHTLGQHFS----DCTVITIAHRITSVIDSDMVLLLSYGL 454 (489)
Q Consensus 415 ~~~i~~~l~~~~~----~~t~i~itH~~~~~~~~d~i~~l~~G~ 454 (489)
...+.+.|.+..+ +.|+|++||+++.+..+|+|.+|..|+
T Consensus 149 ~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 149 RKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9999998877532 358999999999999999999998753
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=5.7e-23 Score=205.44 Aligned_cols=177 Identities=21% Similarity=0.353 Sum_probs=132.3
Q ss_pred EEECCCCCcceeeeeEEe-----eCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEc
Q 011281 250 VRYAPHLPLVLRGLTCTF-----LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 324 (489)
Q Consensus 250 ~~y~~~~~~~l~~i~l~i-----~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 324 (489)
+.|++-. ..+.++.|++ ..||+++++||||-||||++++|+|..+|++|. ..++ .++|-|
T Consensus 343 v~y~~~~-k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKP 407 (591)
T COG1245 343 VEYPDLK-KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKP 407 (591)
T ss_pred eecchhe-eecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecc
Confidence 4454322 2455566655 557889999999999999999999999999998 2222 688999
Q ss_pred CCCc-cCccchhhhcCCC-CC-CcHHHH-HHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCE
Q 011281 325 QDPT-MFEGSVHNNLDPL-EE-YADEEI-WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 400 (489)
Q Consensus 325 Q~~~-lf~~ti~~Ni~~~-~~-~~~~~~-~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~i 400 (489)
|--. -|++||++-+.-. +. +....+ .+.++-.++.+.+ ...-.+|||||.||+|||.||.+++++
T Consensus 408 QyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~-----------e~~v~~LSGGELQRvaIaa~L~reADl 476 (591)
T COG1245 408 QYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLL-----------ERPVDELSGGELQRVAIAAALSREADL 476 (591)
T ss_pred eeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHH-----------hcccccCCchhHHHHHHHHHhccccCE
Confidence 9532 3889998876421 11 111111 2234444444433 333456899999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeC
Q 011281 401 LVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY 452 (489)
Q Consensus 401 lllDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~ 452 (489)
++||||++.||.+.+-.+-+.|++.. .++|.++|-|++-.+.. +||++|+++
T Consensus 477 YllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 477 YLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred EEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99999999999998888888887753 47899999999999998 999999965
No 396
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.88 E-value=6.9e-22 Score=179.12 Aligned_cols=210 Identities=20% Similarity=0.224 Sum_probs=154.0
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC-CCh------
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS-IGL------ 313 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~-~~~------ 313 (489)
..|+++++.|+|+..+ |++-|+|+++++|....+||.||||||||+|+|.|-.-...|.|.+.|.+-=. -..
T Consensus 12 ~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred ceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 4699999999998776 58999999999999999999999999999999999998888999999975311 000
Q ss_pred ----HHhhccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHH--HhccccccchhhcCCCCCCchHHHH
Q 011281 314 ----HDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEV--RKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 314 ----~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i--~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
.+|++..++--. ..+-. +.+-+ +.+.-++-.++. +.|..=||-.+.=+-..+|.|||+|
T Consensus 91 ~YLGgeW~~~~~~age-vplq~-----------D~sae---~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRR 155 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGE-VPLQG-----------DISAE---HMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRR 155 (291)
T ss_pred eEeccccccccccccc-ccccc-----------cccHH---HHHhhccCCChhHhhhhhhheeccceEEEeeccccchhh
Confidence 012222222221 11111 11111 122222222221 1222234444444456689999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
+.|+..|++.=++|+|||-|--||.-.+..+.+.++... .+.|++..||-...++. ..+++.+.+|+++..-+++++
T Consensus 156 VQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 156 VQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred hHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchh
Confidence 999999999999999999999999999999999998654 58899999999999987 999999999999986555555
Q ss_pred hh
Q 011281 465 LE 466 (489)
Q Consensus 465 ~~ 466 (489)
.+
T Consensus 236 ~e 237 (291)
T KOG2355|consen 236 KE 237 (291)
T ss_pred hh
Confidence 43
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.88 E-value=4.4e-22 Score=183.79 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=76.6
Q ss_pred HHhccccccchhhcCCCCCCchHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEec
Q 011281 362 VRKNEGKLESRVTENGENWSMGQRQLVCLARVLL----KKSKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAH 436 (489)
Q Consensus 362 i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall----~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH 436 (489)
+.-+|+|-.|++ ||||||||++|||++. .+|+++++||||++||+.....+.+.+.+..+ ++|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 446788888888 9999999999999985 79999999999999999999999999987644 589999999
Q ss_pred CchhhhhcCEEEEEeC
Q 011281 437 RITSVIDSDMVLLLSY 452 (489)
Q Consensus 437 ~~~~~~~~d~i~~l~~ 452 (489)
+.+.+..+|+++.+++
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999988999999976
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.86 E-value=1.4e-21 Score=184.12 Aligned_cols=146 Identities=14% Similarity=0.074 Sum_probs=108.0
Q ss_pred ceeeeeEEeeCCC-EEEEECCCCCcHHHHHHHHh--------cCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCcc
Q 011281 259 VLRGLTCTFLGGM-KTGIVGRTGSGKSTLIQTLF--------RIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM 329 (489)
Q Consensus 259 ~l~~i~l~i~~g~-~~~ivG~sGsGKSTl~~~l~--------g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 329 (489)
.+-++||++.+|+ +++|+||||||||||++.|. |.+-|....+ .++|+.|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~ 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFAD 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEe
Confidence 3457899999996 69999999999999999998 6555532111 13333333211
Q ss_pred CccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCC
Q 011281 330 FEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATAS 409 (489)
Q Consensus 330 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~ 409 (489)
+. .+..+.++-+.+|+|+||+..+++++ .+|+++++||||++
T Consensus 79 lg-------------------------------------~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g 120 (200)
T cd03280 79 IG-------------------------------------DEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSG 120 (200)
T ss_pred cC-------------------------------------chhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence 10 00111222346799999999999985 89999999999999
Q ss_pred CCHHHHHHHHH-HHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 011281 410 VDTATDNLIQH-TLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFD 459 (489)
Q Consensus 410 lD~~~~~~i~~-~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 459 (489)
+|+.....+.. .+..+. .+.|+|++||+.+....||++++|++|++...+
T Consensus 121 lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 121 TDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 99998887754 455443 478999999997777779999999999998763
No 399
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.5e-21 Score=189.61 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=69.7
Q ss_pred CCCchHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCE
Q 011281 379 NWSMGQRQLVCLARVLLK----KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGL 454 (489)
Q Consensus 379 ~LSgGq~Qrl~laRall~----~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 454 (489)
.|||||+||+++||+++. +|+++++||||++||+.....+.+.+.+..++.|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 499999999999997653 9999999999999999999999999988777889999999999887899999998874
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=3.8e-21 Score=182.59 Aligned_cols=180 Identities=15% Similarity=0.147 Sum_probs=109.6
Q ss_pred eeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCcc---Ccc---c-
Q 011281 261 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM---FEG---S- 333 (489)
Q Consensus 261 ~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l---f~~---t- 333 (489)
+++.+++.+| ..+|+||||||||||+.+|.-..-...... ... -..+++ +..=.++..+ |.. .
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~---i~~g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEF---VKRGCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHH---hhCCCCcEEEEEEEEeCCCcc
Confidence 4455555443 668999999999999999876553211100 000 011111 1100111110 111 1
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH----hccCCCEEEEeCCCCC
Q 011281 334 VHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV----LLKKSKVLVLDEATAS 409 (489)
Q Consensus 334 i~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa----ll~~~~illlDEpts~ 409 (489)
..+|++.. .+.+++.++...... +.+..++.+.+.. ..+...||||||||+.+|++ ++.+|+++++||||++
T Consensus 85 ~~~n~~~~--~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~ 160 (213)
T cd03277 85 QVDNLCQF--LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQG 160 (213)
T ss_pred ccCCceEE--EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEeccccc
Confidence 23444321 133444444443332 3444555444322 44667899999999887755 4589999999999999
Q ss_pred CCHHHHHHHHHHHHHhcC--C-ceEEEEecCchhhh-hcC--EEEEEeCCE
Q 011281 410 VDTATDNLIQHTLGQHFS--D-CTVITIAHRITSVI-DSD--MVLLLSYGL 454 (489)
Q Consensus 410 lD~~~~~~i~~~l~~~~~--~-~t~i~itH~~~~~~-~~d--~i~~l~~G~ 454 (489)
||+.+...+++.+.+..+ + .|+|+|||++.... .|| +|+++++|+
T Consensus 161 LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 161 MDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 999999999999987643 3 47999999976554 455 788888775
No 401
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.3e-20 Score=200.01 Aligned_cols=107 Identities=24% Similarity=0.302 Sum_probs=95.2
Q ss_pred hhhcCCCCCCchHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEE
Q 011281 372 RVTENGENWSMGQRQLVCLARVLLKKS---KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMV 447 (489)
Q Consensus 372 ~vge~G~~LSgGq~Qrl~laRall~~~---~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i 447 (489)
.+|+...+|||||.|||-||.-|.+++ -++||||||.+|-.+--+++++.|.++. .|.|||+|-|+|+.++.||+|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 568999999999999999999999988 8999999999999998899999998765 689999999999999999999
Q ss_pred EEE------eCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 448 LLL------SYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 448 ~~l------~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
+-| ++|+|+.+|+|+|+.+.+.+.-..+++.
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yLk~ 931 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKK 931 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCccchhHHHHHH
Confidence 998 6789999999999998765444444444
No 402
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.85 E-value=2e-20 Score=217.81 Aligned_cols=216 Identities=19% Similarity=0.187 Sum_probs=147.8
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHh------cC---CCCCCceEEECCEeCCCCC----------hHHhhcc
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF------RI---VEPTAGLIAIDGIDISSIG----------LHDLRSR 319 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~------g~---~~~~~G~i~~~g~~~~~~~----------~~~~r~~ 319 (489)
-|+|++++|+-|..++|.|.||||||||++-.+ .+ ++.-+--|.+|-.+|..-+ .+.+|+.
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 589999999999999999999999999997554 11 1333445778877774322 2345555
Q ss_pred ceEEcC------CCcc--Cc----------cc--hhhhcCC------------CCCCcHH-----------------HHH
Q 011281 320 LSIIPQ------DPTM--FE----------GS--VHNNLDP------------LEEYADE-----------------EIW 350 (489)
Q Consensus 320 i~~v~Q------~~~l--f~----------~t--i~~Ni~~------------~~~~~~~-----------------~~~ 350 (489)
++-.|+ .+.. |+ |+ +.=++.| +..+.++ .+.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 543322 1111 11 00 1101111 1111111 233
Q ss_pred HHHHHcCCcHHHH----hc-cccccc-hhhcCCCCCCchHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHH
Q 011281 351 EALDKCQLGNEVR----KN-EGKLES-RVTENGENWSMGQRQLVCLARVLLKK---SKVLVLDEATASVDTATDNLIQHT 421 (489)
Q Consensus 351 ~~~~~~~l~~~i~----~l-~~gldt-~vge~G~~LSgGq~Qrl~laRall~~---~~illlDEpts~lD~~~~~~i~~~ 421 (489)
+|++...-.+-|. .| .-||.. .+|+...+|||||.|||-||.-|.++ +.++||||||.+|++..-+++.+.
T Consensus 1665 ea~~~F~~~~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~ 1744 (1809)
T PRK00635 1665 EVAETFPFLKKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQ 1744 (1809)
T ss_pred HHHHHhhccHHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHH
Confidence 3444331111111 11 113322 56899999999999999999999976 689999999999999999999999
Q ss_pred HHHhc-CCceEEEEecCchhhhhcCEEEEE------eCCEEEEecChhHHhhcCCChHHH
Q 011281 422 LGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGLIEEFDSPTRLLENKSSSFAQ 474 (489)
Q Consensus 422 l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~el~~~~~~~~~~ 474 (489)
+.++. .|.|||+|.|++..++.||.|+-| ++|+|+..|+++++.+.+.+.-..
T Consensus 1745 l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~t~~ 1804 (1809)
T PRK00635 1745 LRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSLLKT 1804 (1809)
T ss_pred HHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCcHHH
Confidence 88765 689999999999999999999999 578999999999999876554333
No 403
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=7.8e-21 Score=211.39 Aligned_cols=199 Identities=23% Similarity=0.253 Sum_probs=165.3
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCceEEECCEeCCCCChHHhhccceEEcCCCccCc-cc
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP---TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GS 333 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~---~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~t 333 (489)
.+|+|++.-++||+.+.+.||.|||||||+++++|-.+- ..|+|.+||.+.++... ++.++|.+|+..-|+ .|
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeE
Confidence 589999999999999999999999999999999998753 35699999999988765 778999999876665 59
Q ss_pred hhhhcCCC-----C-----CCcHHHHH-----HHHHHcCCcHHHHhccccccchhhcCCC-CCCchHHHHHHHHHHhccC
Q 011281 334 VHNNLDPL-----E-----EYADEEIW-----EALDKCQLGNEVRKNEGKLESRVTENGE-NWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 334 i~~Ni~~~-----~-----~~~~~~~~-----~~~~~~~l~~~i~~l~~gldt~vge~G~-~LSgGq~Qrl~laRall~~ 397 (489)
|||-+.+. + +.++.+.. .+++..|| .+..||.||.+.. ..|||||.|+.+|-+++.+
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL-------~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~ 278 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGL-------DHCADTLVGNDMVRGVSGGERKRVSIGEMLVGP 278 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCc-------hhhccceecccccccccCcccceeeeeeeeecC
Confidence 99999763 1 22333322 34555554 4578999997654 5899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCch--hhhhcCEEEEEeCCEEEEecChhHHhh
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRIT--SVIDSDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
++++.+||+|.|||..|.-++.+++++.. .+.|.++.-|+.+ ....-|.|++|.+|+++.+|+.++.+.
T Consensus 279 ~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 279 ASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred cceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999999999999999999999998754 4778888877754 445589999999999999999998863
No 404
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.83 E-value=1.8e-20 Score=181.28 Aligned_cols=194 Identities=16% Similarity=0.200 Sum_probs=133.7
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc--eEEECCEeCCCCChHHhhccc--eEEcCCCccCccchhhhcCC
Q 011281 265 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG--LIAIDGIDISSIGLHDLRSRL--SIIPQDPTMFEGSVHNNLDP 340 (489)
Q Consensus 265 l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G--~i~~~g~~~~~~~~~~~r~~i--~~v~Q~~~lf~~ti~~Ni~~ 340 (489)
+.+.+||+++|+||+|+|||||++.+.+..+...+ .+.+....-+..+..++.+.+ .+|-... +.+-...+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHHH
Confidence 57889999999999999999999999998876533 323222222224555555544 0000000 0000000000
Q ss_pred CCCCcHHHHHHHHH---HcC-----CcHHHHhccccccchhhcCCCCCCchH--------HHHHHHHHHhccCCCEEEEe
Q 011281 341 LEEYADEEIWEALD---KCQ-----LGNEVRKNEGKLESRVTENGENWSMGQ--------RQLVCLARVLLKKSKVLVLD 404 (489)
Q Consensus 341 ~~~~~~~~~~~~~~---~~~-----l~~~i~~l~~gldt~vge~G~~LSgGq--------~Qrl~laRall~~~~illlD 404 (489)
...+.+.++ ..| +-|.+.++++++++..++.|..+|||| +||+++||+++++++|.+|
T Consensus 88 -----~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 88 -----AEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred -----HHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 001111111 222 335678899999999999999999999 9999999999999999999
Q ss_pred CCCCCCCHHHHHH-HHHHHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHH
Q 011281 405 EATASVDTATDNL-IQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 476 (489)
Q Consensus 405 Epts~lD~~~~~~-i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~ 476 (489)
||+.+|+.++.. ++ +.... .++|.|+++|++....++|.|.||++|++ |++++.. .+.|+.++
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~-~~~~~~~~ 226 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLD-PEELQRMW 226 (249)
T ss_pred -eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCC-HHHHHHHH
Confidence 999999765543 33 33333 57899999999999999999999999998 6777754 34565553
No 405
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.81 E-value=1.1e-19 Score=179.97 Aligned_cols=179 Identities=25% Similarity=0.401 Sum_probs=140.7
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCCceEEECCEeCCCCChHHhhccceEEcCC--C
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--------VEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD--P 327 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~--------~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~--~ 327 (489)
++++|+||++++|+.++|+|+|||||||++++|+|. |.|++|.|.+--..+ -+++|-+ |
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCccccc
Confidence 579999999999999999999999999999999995 789999998643222 1234442 3
Q ss_pred ccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCC
Q 011281 328 TMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 407 (489)
Q Consensus 328 ~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpt 407 (489)
.+=.-|+-|.+.- ...+.....+++..+|+.+-+. +-.. -..||-|||-|..||+++...|.+++.||.-
T Consensus 466 ~f~~~tilehl~s-~tGD~~~AveILnraGlsDAvl-----yRr~----f~ELStGQKeR~KLAkllaerpn~~~iDEF~ 535 (593)
T COG2401 466 EFGEVTILEHLRS-KTGDLNAAVEILNRAGLSDAVL-----YRRK----FSELSTGQKERAKLAKLLAERPNVLLIDEFA 535 (593)
T ss_pred ccCchhHHHHHhh-ccCchhHHHHHHHhhccchhhh-----hhcc----HhhcCcchHHHHHHHHHHhcCCCcEEhhhhh
Confidence 3322377776632 1223344567899999988653 1111 2358999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh--cCEEEEEeCCEEEE
Q 011281 408 ASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID--SDMVLLLSYGLIEE 457 (489)
Q Consensus 408 s~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~ 457 (489)
|.||+.|..++...|.++. .+.|.++||||.+.... -|+++.+.-|.+..
T Consensus 536 AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~ 589 (593)
T COG2401 536 AHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPV 589 (593)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccc
Confidence 9999999999999998765 58899999999999886 59999988777643
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.81 E-value=8.8e-20 Score=166.11 Aligned_cols=135 Identities=22% Similarity=0.292 Sum_probs=99.2
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce-EEcCCCccCccchhhhcCCCC
Q 011281 264 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS-IIPQDPTMFEGSVHNNLDPLE 342 (489)
Q Consensus 264 ~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~~Ni~~~~ 342 (489)
++.+.++.++.|+|||||||||+++.+.-..-..+|.+.... +. +.+ .+++...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE------------
Confidence 444555679999999999999999998766555555443310 00 111 111111111
Q ss_pred CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHH
Q 011281 343 EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK----KSKVLVLDEATASVDTATDNLI 418 (489)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~----~~~illlDEpts~lD~~~~~~i 418 (489)
+. +. .+||+||+||+++||++.. +|+++++|||++++|+.....+
T Consensus 72 -------------------i~-------~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l 120 (162)
T cd03227 72 -------------------IF-------TR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120 (162)
T ss_pred -------------------eh-------he-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 00 00 0189999999999999986 7899999999999999999999
Q ss_pred HHHHHHhc-CCceEEEEecCchhhhhcCEEEEEeC
Q 011281 419 QHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSY 452 (489)
Q Consensus 419 ~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~ 452 (489)
.+.+.+.. ++.++|++||+.+....+|+++.|+.
T Consensus 121 ~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 121 AEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 99887754 35899999999999999999999965
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.80 E-value=1.3e-19 Score=181.61 Aligned_cols=189 Identities=23% Similarity=0.281 Sum_probs=125.7
Q ss_pred EEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc--------
Q 011281 247 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS-------- 318 (489)
Q Consensus 247 ~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~-------- 318 (489)
+++-+|+.+. ..|..+- ..++|+.++|+||||-||||.+|+|+|.+.|.=|+- ++.+-++-=.+..|.
T Consensus 79 e~vHRYg~Ng-FkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~ 154 (591)
T COG1245 79 EVVHRYGVNG-FKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFK 154 (591)
T ss_pred cceeeccCCc-eEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHH
Confidence 4566786543 2344333 357899999999999999999999999999987754 221111000000000
Q ss_pred -----------cceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 319 -----------RLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 319 -----------~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
++-||--=|-.+.|++.|-+.-.++ .....+..++.+ ++-.+...-..|||||-||
T Consensus 155 ~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de--~g~~devve~l~-----------L~nvl~r~v~~LSGGELQr 221 (591)
T COG1245 155 KLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE--RGKFDEVVERLG-----------LENVLDRDVSELSGGELQR 221 (591)
T ss_pred HHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh--cCcHHHHHHHhc-----------chhhhhhhhhhcCchHHHH
Confidence 1111111233334444443321100 011222333333 4444555566799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeC
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVID-SDMVLLLSY 452 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~ 452 (489)
+|||.|++++++++++|||||-||...+-..-+.++.+.+ +++||+|.|+|..+.. +|-|-++-+
T Consensus 222 ~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 222 VAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 9999999999999999999999999988888888887765 7999999999999997 899888754
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.79 E-value=2e-19 Score=171.87 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=110.9
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce-EEcCCCccCccchhh
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS-IIPQDPTMFEGSVHN 336 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~~ 336 (489)
.+.+|+++++++|++++|.|||||||||+++.++- -.+..++| +||.+...++ +.+
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~~ 74 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IVD 74 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--ccc
Confidence 57899999999999999999999999999999981 12233455 6666543221 111
Q ss_pred hcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh--ccCCCEEEEeCC---CCCCC
Q 011281 337 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL--LKKSKVLVLDEA---TASVD 411 (489)
Q Consensus 337 Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal--l~~~~illlDEp---ts~lD 411 (489)
+++...++.+.+ ...+|.|++|+..+++++ +.+|+++||||| |+++|
T Consensus 75 --------------~il~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 75 --------------CILARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred --------------eeEeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 122233333221 235799999999999999 999999999999 99999
Q ss_pred HHHHHH-HHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 011281 412 TATDNL-IQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 412 ~~~~~~-i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 460 (489)
+..... +.+.+.+ ..+.|+|++||..+....||++..+++|++...++
T Consensus 127 ~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 127 GFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 876543 3355543 24789999999755555699999999999976654
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.8e-18 Score=170.50 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=61.7
Q ss_pred CCCchHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-c---C
Q 011281 379 NWSMGQRQLVCLARVLL---------KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-S---D 445 (489)
Q Consensus 379 ~LSgGq~Qrl~laRall---------~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~---d 445 (489)
.+|+||+|++++||+++ .+|++++|||||++||+...+.+.+.+.+.. .+++++|+...+.. | +
T Consensus 183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~~~~ 259 (270)
T cd03242 183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWLRRA 259 (270)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhccCc
Confidence 37999999999999974 7999999999999999999999999997642 45556665555544 5 7
Q ss_pred EEEEEeCCEE
Q 011281 446 MVLLLSYGLI 455 (489)
Q Consensus 446 ~i~~l~~G~i 455 (489)
+|+.+++|+|
T Consensus 260 ~i~~l~~g~i 269 (270)
T cd03242 260 QIFRVDAGTL 269 (270)
T ss_pred cEEEEeCcEE
Confidence 8999999986
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.75 E-value=3.4e-18 Score=161.32 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=103.0
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCC
Q 011281 262 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI-VEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDP 340 (489)
Q Consensus 262 ~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~ 340 (489)
..++++.+|++++|+|||||||||++++|++. +.+..|.... ..+..+++..|....|. ..+++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~--~~d~i-- 85 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIG--AEDSI-- 85 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEec--Ccccc--
Confidence 44566668999999999999999999999943 2222222110 01123333333222111 11111
Q ss_pred CCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 011281 341 LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 420 (489)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~ 420 (489)
.++-+.++++++| +..+.+++.+|+++|+||||+++|+.....+..
T Consensus 86 ---------------------------------~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 86 ---------------------------------SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred ---------------------------------cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 1111234555554 777778889999999999999999987776654
Q ss_pred H-HHHhc-CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 011281 421 T-LGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 421 ~-l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el 464 (489)
. +.... .+.++|++||+.+.+..+|++..++.|++...++..++
T Consensus 132 ~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 132 AVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 4 33332 47899999999999999999999999999988875444
No 411
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.75 E-value=2.4e-18 Score=161.67 Aligned_cols=140 Identities=19% Similarity=0.117 Sum_probs=96.6
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCc-cchhh
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHN 336 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~ 336 (489)
++++|++++. |++++|+||||||||||+|+|+|... +...|.++... .+++|...+|. .|++|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccchh
Confidence 4778777664 79999999999999999999987542 23456555321 35667555665 59999
Q ss_pred hcCCCCCCcH---HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 011281 337 NLDPLEEYAD---EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 413 (489)
Q Consensus 337 Ni~~~~~~~~---~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~ 413 (489)
|+..+..... +++.++++.++ +.+|+++|+||||+++|+.
T Consensus 79 ~l~~~~s~~~~e~~~~~~iL~~~~-------------------------------------~~~p~llllDEp~~glD~~ 121 (199)
T cd03283 79 DLRDGISYFYAELRRLKEIVEKAK-------------------------------------KGEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred ccccccChHHHHHHHHHHHHHhcc-------------------------------------CCCCeEEEEecccCCCCHH
Confidence 9976543222 22333333332 1799999999999999999
Q ss_pred HHHHHHH-HHHHh-cCCceEEEEecCchhhhhc---CEEEEE
Q 011281 414 TDNLIQH-TLGQH-FSDCTVITIAHRITSVIDS---DMVLLL 450 (489)
Q Consensus 414 ~~~~i~~-~l~~~-~~~~t~i~itH~~~~~~~~---d~i~~l 450 (489)
....+.. .+... .++.|+|++||+++.+... ++|-.+
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 8766544 34443 2478999999999887653 455443
No 412
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.74 E-value=4.6e-16 Score=150.44 Aligned_cols=192 Identities=19% Similarity=0.306 Sum_probs=150.8
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+++|+++.|.++|+++++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.++++.++..++..++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~ 159 (275)
T PF00664_consen 80 LFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISF 159 (275)
T ss_dssp HHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhh
Confidence 36899999999999999999999999999999999988888888888888888899999999999888777777777777
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.++.++..++..+..++..+.+.|.++|+++||+|+.++++.+++.+..++..+...+......+.......+..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PF00664_consen 160 IFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSI 239 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888999999999999999999999999999999998888887766655555545555554444444433
Q ss_pred HHHHHHH-HH-hcCCcccHHHHHHHHHHHHHHHH
Q 011281 161 VFSLFFI-IS-VPEGVVDPAIAGLAVTFGLNLNM 192 (489)
Q Consensus 161 ~~~~~~~-~~-~~~g~i~~~~~~~~~~~~~~~~~ 192 (489)
.+.+++. .. ...|.++.+....++.+...+..
T Consensus 240 ~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~ 273 (275)
T PF00664_consen 240 VLILIFGAYLSVINGQISIGTLVAFLSLSSQLIN 273 (275)
T ss_dssp HHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHh
Confidence 3333332 33 56777776666655555544433
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.4e-17 Score=165.81 Aligned_cols=209 Identities=19% Similarity=0.271 Sum_probs=141.6
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCceEEECCEeCCCCChHHh---
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR--IVEPTAGLIAIDGIDISSIGLHDL--- 316 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g--~~~~~~G~i~~~g~~~~~~~~~~~--- 316 (489)
.|.++|.+.+..++ ..+.|-||.|-.|..+++|||||-|||||++.|+. +--|..=.|+++.+++..-+...+
T Consensus 264 DIKiEnF~ISA~Gk--~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISAQGK--LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeecccc--eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 47788888777544 47889999999999999999999999999999975 333555556676666532221110
Q ss_pred ----hccceEEcCCCcc----Cc--cchhhhcC--------CCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCC
Q 011281 317 ----RSRLSIIPQDPTM----FE--GSVHNNLD--------PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 378 (489)
Q Consensus 317 ----r~~i~~v~Q~~~l----f~--~ti~~Ni~--------~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~ 378 (489)
.+...++..+.-| -. .|..|-+. .+....+.+.++++.-.|+....+..| ..
T Consensus 342 l~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rP----------t~ 411 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERP----------TT 411 (807)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCC----------cc
Confidence 0011111111111 01 12222220 112222334444444444444443333 24
Q ss_pred CCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEE-
Q 011281 379 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE- 456 (489)
Q Consensus 379 ~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~- 456 (489)
.+|||=|-|++|||||+-+|-+|+|||||++||.....-+-+.+..| .+|.++|+|+-.++.. |..|+.|++-++-
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHY 489 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhh
Confidence 58999999999999999999999999999999988766667777766 5799999999999998 9999999998875
Q ss_pred EecChhHH
Q 011281 457 EFDSPTRL 464 (489)
Q Consensus 457 ~~g~~~el 464 (489)
..|+|.-.
T Consensus 490 YrGNY~~F 497 (807)
T KOG0066|consen 490 YRGNYTLF 497 (807)
T ss_pred hcchHHHH
Confidence 56776543
No 414
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=5e-17 Score=182.01 Aligned_cols=100 Identities=22% Similarity=0.263 Sum_probs=89.4
Q ss_pred cccch-hhcCCCCCCchHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh
Q 011281 368 KLESR-VTENGENWSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID 443 (489)
Q Consensus 368 gldt~-vge~G~~LSgGq~Qrl~laRall~~~--~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ 443 (489)
|++.. ++....+|||||+||+.|||||..+| ++|||||||++||+...+.+.+.|+++. +|+|||+|+|+++.+..
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 44432 46667889999999999999999986 8999999999999999999999998764 47899999999999999
Q ss_pred cCEEEEE------eCCEEEEecChhHHhhc
Q 011281 444 SDMVLLL------SYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 444 ~d~i~~l------~~G~i~~~g~~~el~~~ 467 (489)
||+|++| ++|+|+..|+++++...
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998653
No 415
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.69 E-value=5.4e-17 Score=182.08 Aligned_cols=95 Identities=19% Similarity=0.267 Sum_probs=87.3
Q ss_pred hhcCCCCCCchHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEE
Q 011281 373 VTENGENWSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLL 449 (489)
Q Consensus 373 vge~G~~LSgGq~Qrl~laRall~~~--~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~ 449 (489)
.+....+|||||+|||+|||||..+| ++|||||||++||+...+.+.+.|+++. .|.|||+|+|+++.+..||+|++
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~ 562 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVD 562 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 45566789999999999999999997 8999999999999999999999998765 48999999999999989999999
Q ss_pred E------eCCEEEEecChhHHhhc
Q 011281 450 L------SYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 450 l------~~G~i~~~g~~~el~~~ 467 (489)
| ++|+|+..|+++++...
T Consensus 563 LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 563 IGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred eccccCCCCCEEeeccCHHHHhcC
Confidence 9 99999999999998754
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.69 E-value=2.3e-16 Score=154.35 Aligned_cols=142 Identities=19% Similarity=0.279 Sum_probs=104.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC-hHHhhccceEEcCCCccCccchhhhcCCCCCCcHHHH
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG-LHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEI 349 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~ 349 (489)
..++|+||+|||||||++.|+|++.|.+|+|.++|+++...+ ..++...++++||...--..++.+|.. +.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~------k~~- 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP------KAE- 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch------HHH-
Confidence 678999999999999999999999999999999999997664 456777788999965332234555420 110
Q ss_pred HHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCc
Q 011281 350 WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDC 429 (489)
Q Consensus 350 ~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~ 429 (489)
| -..++|+ .+|+++++|||++ .+.+...+.....|.
T Consensus 185 ---------------------------------~---~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G~ 220 (270)
T TIGR02858 185 ---------------------------------G---MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAGV 220 (270)
T ss_pred ---------------------------------H---HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCCC
Confidence 1 1455666 4999999999974 223333344444689
Q ss_pred eEEEEecCchh--h------------hhcCEEEEEeCCEEEEecChhHHh
Q 011281 430 TVITIAHRITS--V------------IDSDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 430 t~i~itH~~~~--~------------~~~d~i~~l~~G~i~~~g~~~el~ 465 (489)
|+|+++|+.+. + ..+||+++|++|+ ..|+.+++.
T Consensus 221 ~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 221 SIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred EEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 99999997555 3 3379999999887 677776654
No 417
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.68 E-value=3.9e-17 Score=136.29 Aligned_cols=75 Identities=21% Similarity=0.178 Sum_probs=70.6
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhh
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 337 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 337 (489)
.+|++++|++++|+.++|+||||||||||++++. +|++.++|.|+..++.++.++.+++++|+ +|.+||+||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 4899999999999999999999999999999986 79999999999999888888889999998 999999999
Q ss_pred cCC
Q 011281 338 LDP 340 (489)
Q Consensus 338 i~~ 340 (489)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 976
No 418
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.66 E-value=3e-16 Score=156.27 Aligned_cols=192 Identities=22% Similarity=0.310 Sum_probs=136.7
Q ss_pred EEECCCCCcceeeeeEEeeCCC-----EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEc
Q 011281 250 VRYAPHLPLVLRGLTCTFLGGM-----KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 324 (489)
Q Consensus 250 ~~y~~~~~~~l~~i~l~i~~g~-----~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 324 (489)
++||+.. ....+..|.|+.|+ ++...|+||-||||++++++|..+|++|. ++..+ .++|-|
T Consensus 343 y~Yp~m~-k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSykp 408 (592)
T KOG0063|consen 343 YSYPKMK-KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYKP 408 (592)
T ss_pred eccCcce-eeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceeccc
Confidence 5676543 36889999999985 68899999999999999999999998762 22222 477888
Q ss_pred CCCc-cCccchhhhcCC--CCCCcHHH-HHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCE
Q 011281 325 QDPT-MFEGSVHNNLDP--LEEYADEE-IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 400 (489)
Q Consensus 325 Q~~~-lf~~ti~~Ni~~--~~~~~~~~-~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~i 400 (489)
|.-. -|.+|+|.-+.- ...+.+.+ +.+.++-.. .+-.++..-.+|||||.||+++|-+|-+.+++
T Consensus 409 qkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~-----------ie~i~dqevq~lSggelQRval~KOGGKpAdv 477 (592)
T KOG0063|consen 409 QKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQ-----------IENIIDQEVQGLSGGELQRVALALCLGKPADV 477 (592)
T ss_pred cccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhh-----------HHHHHhHHhhcCCchhhHHHHHHHhcCCCCce
Confidence 8643 577888876521 11111111 222333322 33344555678899999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEecCchhhhh-cCEEEEEeCCE--EEEecChhHHhh
Q 011281 401 LVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVID-SDMVLLLSYGL--IEEFDSPTRLLE 466 (489)
Q Consensus 401 lllDEpts~lD~~~~~~i~~~l~~~--~~~~t~i~itH~~~~~~~-~d~i~~l~~G~--i~~~g~~~el~~ 466 (489)
++.|||.+-||.+.+..--+.+++. ..++|-.+|.|++-.... +||++|.++-. ....-+++.|++
T Consensus 478 YliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~ 548 (592)
T KOG0063|consen 478 YLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA 548 (592)
T ss_pred EEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence 9999999999999876655555553 247899999999887776 99999987532 223334455544
No 419
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.64 E-value=8.9e-16 Score=144.70 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=94.6
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE-EcCCCccCccchh
Q 011281 257 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI-IPQDPTMFEGSVH 335 (489)
Q Consensus 257 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~-v~Q~~~lf~~ti~ 335 (489)
+++.+|++|++++|+.++|+|||||||||+++.++++. +..++|. ||-.. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 35899999999999999999999999999999998863 2223332 21111 112455
Q ss_pred hhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 011281 336 NNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 415 (489)
Q Consensus 336 ~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~ 415 (489)
++|... .+. +..+.++.+.+|+|++|+ ..+-+++.+|++++||||++++|+...
T Consensus 73 d~I~~~--------------~~~-----------~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLLSR--------------LSN-----------DDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hheeEe--------------cCC-----------ccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHH
Confidence 555321 011 111223345679999975 455567889999999999999999764
Q ss_pred HHHHH-HHHHhc-CCceEEEEecCchhhhhc
Q 011281 416 NLIQH-TLGQHF-SDCTVITIAHRITSVIDS 444 (489)
Q Consensus 416 ~~i~~-~l~~~~-~~~t~i~itH~~~~~~~~ 444 (489)
..+.. .+..+. .+.++|++||+.+.+..+
T Consensus 127 ~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 127 FAISLAILECLIKKESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 44333 333322 478999999999988763
No 420
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.63 E-value=3.7e-16 Score=148.79 Aligned_cols=154 Identities=15% Similarity=0.083 Sum_probs=100.4
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCc-cchhh
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHN 336 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~ 336 (489)
.+.+|++++.++ ++++|+|||||||||+++.+++..-. |. .|..+ ...+..++++.| +|. -++.+
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v-----p~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV-----PASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee-----ccccceecceee---EeccCCchh
Confidence 478899999887 99999999999999999999874321 10 11111 111234555544 332 23444
Q ss_pred hcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh--ccCCCEEEEeCC---CCCCC
Q 011281 337 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL--LKKSKVLVLDEA---TASVD 411 (489)
Q Consensus 337 Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal--l~~~~illlDEp---ts~lD 411 (489)
|+..+. |-=...+..+++++ +.+|+++||||| |+++|
T Consensus 85 ~ls~g~--------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD 126 (216)
T cd03284 85 DLAGGR--------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYD 126 (216)
T ss_pred hhccCc--------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHH
Confidence 432210 11112223455554 469999999999 99999
Q ss_pred HHH-HHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 011281 412 TAT-DNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 412 ~~~-~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el 464 (489)
+.. ...+.+.+.+. .+.|+|++||+.+....+|++..+++|++...++.+++
T Consensus 127 ~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 127 GLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 864 34455555432 37899999999877777888878888988776665555
No 421
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=1.6e-15 Score=178.64 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=102.9
Q ss_pred cCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH------HHHHHHHhccCCCEEE
Q 011281 329 MFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ------LVCLARVLLKKSKVLV 402 (489)
Q Consensus 329 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q------rl~laRall~~~~ill 402 (489)
.|+||+++||.+.++.+++ ..+++.++..+|+..+|.| ||.++..| .||||||| |++||||++.+|++|+
T Consensus 1153 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~ 1228 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIA 1228 (1311)
T ss_pred HcCccHHHHhhcCCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEE
Confidence 4899999999995555555 6889999999999999999 99999876 89999999 9999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhc------CCceEEEEecCchhhhh------cCEEEEE
Q 011281 403 LDEATASVDTATDNLIQHTLGQHF------SDCTVITIAHRITSVID------SDMVLLL 450 (489)
Q Consensus 403 lDEpts~lD~~~~~~i~~~l~~~~------~~~t~i~itH~~~~~~~------~d~i~~l 450 (489)
|||||++||+.+...+.+.|.... .+.|+|+|||+++.+.. ||+.+-+
T Consensus 1229 lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1229 LDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 999999999999998888887642 36799999999998864 4665544
No 422
>PRK00064 recF recombination protein F; Reviewed
Probab=99.61 E-value=7e-15 Score=150.65 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=65.7
Q ss_pred CCCCchHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh---cC
Q 011281 378 ENWSMGQRQLVCLARVLL---------KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID---SD 445 (489)
Q Consensus 378 ~~LSgGq~Qrl~laRall---------~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~---~d 445 (489)
..+|+||+|++++|++++ ++|||++||||+++||+...+.+.+.+... +..++++||+...+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 358999999999999885 799999999999999999999999888653 4588999998876654 46
Q ss_pred EEEEEeCCEE
Q 011281 446 MVLLLSYGLI 455 (489)
Q Consensus 446 ~i~~l~~G~i 455 (489)
+++.+++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.60 E-value=5.4e-15 Score=141.29 Aligned_cols=169 Identities=22% Similarity=0.300 Sum_probs=103.1
Q ss_pred eeeeEEeeCCCEEEEECCCCCcHHHHHHHH-hcCCC-CC-CceEEECCEeCCCC------ChHHhhccceEEcCCCccC-
Q 011281 261 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTL-FRIVE-PT-AGLIAIDGIDISSI------GLHDLRSRLSIIPQDPTMF- 330 (489)
Q Consensus 261 ~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l-~g~~~-~~-~G~i~~~g~~~~~~------~~~~~r~~i~~v~Q~~~lf- 330 (489)
++..+.+.+ ..++|+|||||||||++.+| .-+-. |. ..+ +...+++ ........|....+++.-.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r----~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~ 90 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFR----GSKLKDLINKSGSDQDSKSAEVELIFDNSDEEF 90 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-----SSGGTCB--BTTB---SEEEEEEEEECTTEES
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHccccccc----ccccccccccccccccccccccccccccccccc
Confidence 355566654 69999999999999999999 33331 11 111 1111111 0011223344444333211
Q ss_pred ---cc--chhhhcC--------C-CCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh--
Q 011281 331 ---EG--SVHNNLD--------P-LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL-- 394 (489)
Q Consensus 331 ---~~--ti~~Ni~--------~-~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal-- 394 (489)
.. .+...+. . .......++.+.+....+... .||||||-+++||--|
T Consensus 91 ~~~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~-----------------~lSgGEk~~~~Lal~lA~ 153 (220)
T PF02463_consen 91 ELDKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE-----------------FLSGGEKSLVALALLLAL 153 (220)
T ss_dssp SSSSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT-----------------GS-HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-----------------cccccccccccccccccc
Confidence 11 1111111 1 112345666666666655432 7899999999998443
Q ss_pred --ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEe
Q 011281 395 --LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLS 451 (489)
Q Consensus 395 --l~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 451 (489)
..++|++||||+.++||+.....+.+.|.+..++.-+|++||+...+..||+.+.+.
T Consensus 154 ~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 154 QRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp HTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 478899999999999999999999999998877889999999999999999988763
No 424
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.53 E-value=1.2e-14 Score=158.06 Aligned_cols=107 Identities=19% Similarity=0.267 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCcHHHHhccccccchhhcCC------CCCCchHHHHHHHHHHhc----------cCCCEEEEeCCC-CC
Q 011281 347 EEIWEALDKCQLGNEVRKNEGKLESRVTENG------ENWSMGQRQLVCLARVLL----------KKSKVLVLDEAT-AS 409 (489)
Q Consensus 347 ~~~~~~~~~~~l~~~i~~l~~gldt~vge~G------~~LSgGq~Qrl~laRall----------~~~~illlDEpt-s~ 409 (489)
+.+.+.++..+. ++...+|+++++.+++.| .+||||||||++||||++ .+|+++|||||| ++
T Consensus 431 ~~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ 509 (562)
T PHA02562 431 KQINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGA 509 (562)
T ss_pred HHHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcc
Confidence 344445555443 344467889999998888 689999999999999987 599999999998 78
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeC-CEE
Q 011281 410 VDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY-GLI 455 (489)
Q Consensus 410 lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~-G~i 455 (489)
||+.....+.+.|... ++.|+|+|||+.+....+|++++|++ |+.
T Consensus 510 ld~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 510 LDAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred cchhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 9999999999999887 78899999999888888999999986 544
No 425
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.49 E-value=1.2e-13 Score=131.17 Aligned_cols=134 Identities=19% Similarity=0.129 Sum_probs=89.6
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCc--cch
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR--IVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE--GSV 334 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~--~ti 334 (489)
+-+|+++.=..+.+++|+||||+||||+++.+.. .. +..|...... .-.++|..|...-+. +|+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence 4455555422237899999999999999999983 33 4556654422 124667777543222 133
Q ss_pred hhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 011281 335 HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 414 (489)
Q Consensus 335 ~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~ 414 (489)
.+++ ..| .-+-||+++|++++.+|++++||||++++|+..
T Consensus 86 ~~~~--------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~ 125 (213)
T cd03281 86 SSGQ--------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTED 125 (213)
T ss_pred hhcc--------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHH
Confidence 3322 111 234589999999999999999999999999875
Q ss_pred HH-HHHHHHHHhcC----CceEEEEecCchhhhhc
Q 011281 415 DN-LIQHTLGQHFS----DCTVITIAHRITSVIDS 444 (489)
Q Consensus 415 ~~-~i~~~l~~~~~----~~t~i~itH~~~~~~~~ 444 (489)
.. .....++.+.+ +.++|++||.++.+...
T Consensus 126 ~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 126 GAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 43 33445554432 24899999999988764
No 426
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.47 E-value=4e-14 Score=131.72 Aligned_cols=77 Identities=10% Similarity=0.009 Sum_probs=52.3
Q ss_pred CCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhc--CCceEEEEecCchhhhhcCEEEEEeCC
Q 011281 377 GENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT-LGQHF--SDCTVITIAHRITSVIDSDMVLLLSYG 453 (489)
Q Consensus 377 G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~-l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G 453 (489)
.+.+|+|++|...+++. +.+|+++|+|||++++|+.....+... ++... .+.++|++||.++..+.+|+---++++
T Consensus 59 ~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~ 137 (185)
T smart00534 59 LSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNL 137 (185)
T ss_pred ccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEE
Confidence 35578887764333332 349999999999999999976665444 44433 368999999999866667743333333
Q ss_pred E
Q 011281 454 L 454 (489)
Q Consensus 454 ~ 454 (489)
+
T Consensus 138 ~ 138 (185)
T smart00534 138 H 138 (185)
T ss_pred E
Confidence 3
No 427
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.46 E-value=1.1e-12 Score=136.57 Aligned_cols=174 Identities=19% Similarity=0.221 Sum_probs=114.7
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE---eCCC-----CChHHhhccceEEcC--CC
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI---DISS-----IGLHDLRSRLSIIPQ--DP 327 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~---~~~~-----~~~~~~r~~i~~v~Q--~~ 327 (489)
.+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|+ ++.+ ++.+.+++.+.++.+ +|
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~ 225 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQP 225 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCC
Confidence 489999 999999999999999999999999999999999999999554 4442 344456777888854 22
Q ss_pred ccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhh-cCCCCCCchHHHH-HHHHHHhccCCCEEEEeC
Q 011281 328 TMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVT-ENGENWSMGQRQL-VCLARVLLKKSKVLVLDE 405 (489)
Q Consensus 328 ~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vg-e~G~~LSgGq~Qr-l~laRall~~~~illlDE 405 (489)
.+ +++..+.-.+-+.++... .|.|-.+- ++-.++ -|.|| ++++ +.+||
T Consensus 226 ~~-----------------~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~--A~A~rEisl~---~ge~P------ 275 (438)
T PRK07721 226 AL-----------------MRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRV--AMAQREIGLA---VGEPP------ 275 (438)
T ss_pred HH-----------------HHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHH--HHHHHHHHHh---cCCCC------
Confidence 21 122111111112222221 13332221 100000 11111 1111 12332
Q ss_pred CCCCCCHHHHHHHHHHHHHhc---CCc-----eEEEEecCchhhhhcCEEEEEeCCEEEEecChhH
Q 011281 406 ATASVDTATDNLIQHTLGQHF---SDC-----TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 406 pts~lD~~~~~~i~~~l~~~~---~~~-----t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~e 463 (489)
.|+|+|+.....+.+.+.+.. .|. ||++.+|+++. ..||++.++.+|+|+.+++..+
T Consensus 276 ~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 478999999998888887764 465 99999999985 6699999999999999987543
No 428
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.43 E-value=2.3e-13 Score=151.04 Aligned_cols=150 Identities=14% Similarity=0.178 Sum_probs=96.5
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCC-CEEEEECCCCCcHHHHHHHHhcC-CCCCCceEEECCEeCCCCChHHhhcc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGG-MKTGIVGRTGSGKSTLIQTLFRI-VEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g-~~~~ivG~sGsGKSTl~~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.++++..-+-...+ .-.+|+++.++ ++++|+||||+||||++|++++. +.+..|.
T Consensus 295 ~i~l~~~rhPll~~~~--~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------------- 353 (771)
T TIGR01069 295 KIILENARHPLLKEPK--VVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------------- 353 (771)
T ss_pred CEEEccccCceecCCc--eEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC-------------------
Confidence 4666666432211100 12478888877 89999999999999999999987 3333331
Q ss_pred ceEEcCCCc-cCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 320 LSIIPQDPT-MFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 320 i~~v~Q~~~-lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
+||.... .+ .+.+++.. ...++ -.+.++-+++|+|++|+..+++++ .+|
T Consensus 354 --~Vpa~~~~~~--~~~d~i~~--~i~~~-----------------------~si~~~LStfS~~m~~~~~il~~~-~~~ 403 (771)
T TIGR01069 354 --PIPANEHSEI--PYFEEIFA--DIGDE-----------------------QSIEQNLSTFSGHMKNISAILSKT-TEN 403 (771)
T ss_pred --CccCCccccc--cchhheee--ecChH-----------------------hHHhhhhhHHHHHHHHHHHHHHhc-CCC
Confidence 3333321 01 11122210 00110 011223356799999999999987 789
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHhc-CCceEEEEecCchhhh
Q 011281 399 KVLVLDEATASVDTATDNLIQH-TLGQHF-SDCTVITIAHRITSVI 442 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~-~l~~~~-~~~t~i~itH~~~~~~ 442 (489)
+++|||||++++|+.....+.. .+..+. .+.++|++||..+...
T Consensus 404 sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 404 SLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 9999999999999998877743 444332 5789999999987643
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.40 E-value=6e-13 Score=144.25 Aligned_cols=77 Identities=21% Similarity=0.171 Sum_probs=71.2
Q ss_pred CCCCchHHHHHHHHHHhccC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCC
Q 011281 378 ENWSMGQRQLVCLARVLLKK----SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYG 453 (489)
Q Consensus 378 ~~LSgGq~Qrl~laRall~~----~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 453 (489)
..|||||+||++|||+++.. |+++||||||++||+.+...+.+.|.+..+++|||+|||+++.+..||+++++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 35799999999999999875 69999999999999999999999999877789999999999999889999999987
Q ss_pred E
Q 011281 454 L 454 (489)
Q Consensus 454 ~ 454 (489)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 430
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.39 E-value=2.5e-13 Score=129.33 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHh
Q 011281 383 GQRQLVCLARVLLKKSKVLVLDEAT-----ASVDTATDNLIQHTLGQH 425 (489)
Q Consensus 383 Gq~Qrl~laRall~~~~illlDEpt-----s~lD~~~~~~i~~~l~~~ 425 (489)
.|++++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 3999999999999999999999999 999999999999999875
No 431
>PRK14079 recF recombination protein F; Provisional
Probab=99.36 E-value=1e-11 Score=126.73 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=61.9
Q ss_pred CCCchHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEE
Q 011281 379 NWSMGQRQLVCLARVLL---------KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLL 449 (489)
Q Consensus 379 ~LSgGq~Qrl~laRall---------~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~ 449 (489)
-+|+||++++++|+.|+ .+||+++||||+|.||+.....+.+.+.... .++|..| +.-..+|+++.
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t---~~~~~~~~~~~ 337 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGT---EAPPGAALTLR 337 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcC---CCCCCCceEEE
Confidence 37999999999999998 8999999999999999999999988885432 3444333 23345899999
Q ss_pred EeCCEEEEecC
Q 011281 450 LSYGLIEEFDS 460 (489)
Q Consensus 450 l~~G~i~~~g~ 460 (489)
+++|++.-..+
T Consensus 338 ~~~~~~~~~~~ 348 (349)
T PRK14079 338 IEAGVFTPEAP 348 (349)
T ss_pred EeccEecCCCC
Confidence 99999875444
No 432
>PRK10869 recombination and repair protein; Provisional
Probab=99.35 E-value=2.1e-12 Score=139.09 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=70.4
Q ss_pred CCCchHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCE
Q 011281 379 NWSMGQRQLVCLARVLLK----KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGL 454 (489)
Q Consensus 379 ~LSgGq~Qrl~laRall~----~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 454 (489)
.+||||+||++|||+++. +|+++|||||+++||+.+...+.+.+++..++.|+|+|||+++.+..||+.+++.++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 479999999999999996 5899999999999999999999999998877899999999999998899999998754
No 433
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.32 E-value=6.4e-12 Score=119.83 Aligned_cols=136 Identities=16% Similarity=0.125 Sum_probs=84.5
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhc-CCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCcc-ch
Q 011281 257 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR-IVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SV 334 (489)
Q Consensus 257 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 334 (489)
+.+.+|+++++.+|++++|.||||+||||+++.+++ .+.++.|...... .. .+++..| +|.. ..
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~----------~~~~~~~---i~~~~~~ 83 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA----------TLSIFDS---VLTRMGA 83 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce----------EEeccce---EEEEecC
Confidence 358899999999999999999999999999999999 6778888765432 11 2333322 1110 11
Q ss_pred hhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 011281 335 HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 414 (489)
Q Consensus 335 ~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~ 414 (489)
.|++.-+..... .|-+|++-+-.-+.+++++|||||.++.|+..
T Consensus 84 ~d~~~~~~StF~------------------------------------~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d 127 (222)
T cd03287 84 SDSIQHGMSTFM------------------------------------VELSETSHILSNCTSRSLVILDELGRGTSTHD 127 (222)
T ss_pred ccccccccchHH------------------------------------HHHHHHHHHHHhCCCCeEEEEccCCCCCChhh
Confidence 222211101111 11122222222346799999999977776544
Q ss_pred HHH----HHHHHHHhcCCceEEEEecCchhhhh
Q 011281 415 DNL----IQHTLGQHFSDCTVITIAHRITSVID 443 (489)
Q Consensus 415 ~~~----i~~~l~~~~~~~t~i~itH~~~~~~~ 443 (489)
... +.+.+.+. .+.|+|++||+++....
T Consensus 128 ~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 128 GIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHH
Confidence 333 34444332 36899999999887654
No 434
>PRK13695 putative NTPase; Provisional
Probab=99.31 E-value=3.3e-12 Score=117.61 Aligned_cols=78 Identities=18% Similarity=0.094 Sum_probs=63.6
Q ss_pred CCCCchHHHHHHHHHHhccCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEE
Q 011281 378 ENWSMGQRQLVCLARVLLKKSKVLVLDE--ATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLI 455 (489)
Q Consensus 378 ~~LSgGq~Qrl~laRall~~~~illlDE--pts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 455 (489)
..+||+++-+..+++..+++|+++++|| |+.++|+...+.+.+.+ ..++++|+++|+-.....+|+|..+.+|+|
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGGRV 153 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCcEE
Confidence 3589999999999999999999999999 55566655555555555 247899999999655566999999999999
Q ss_pred EEe
Q 011281 456 EEF 458 (489)
Q Consensus 456 ~~~ 458 (489)
.+-
T Consensus 154 ~~~ 156 (174)
T PRK13695 154 YEL 156 (174)
T ss_pred EEE
Confidence 875
No 435
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.29 E-value=4.4e-11 Score=115.03 Aligned_cols=156 Identities=13% Similarity=0.145 Sum_probs=88.2
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHH-HHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTL-IQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl-~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
+.+++++..+++ -+++|+.+.|.||+||||||+ ++.++++.++....+.+... .+++++.++
T Consensus 8 ~~~~~ld~~l~g-----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e----~~~~~~~~~-- 70 (230)
T PRK08533 8 LSRDELHKRLGG-----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ----LTTTEFIKQ-- 70 (230)
T ss_pred EEEeeeehhhCC-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHH--
Confidence 455666554433 378999999999999999999 68999887654443433321 111111111
Q ss_pred EEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCc--HHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc----
Q 011281 322 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLG--NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL---- 395 (489)
Q Consensus 322 ~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~--~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall---- 395 (489)
+...|.+ ++... +.+. .+ +-...+|+++.++-.+++.+-
T Consensus 71 -------------------------------~~~~g~~~~~~~~~--~~l~-~~-~~~~~~~~~~~~~~~l~~il~~~~~ 115 (230)
T PRK08533 71 -------------------------------MMSLGYDINKKLIS--GKLL-YI-PVYPLLSGNSEKRKFLKKLMNTRRF 115 (230)
T ss_pred -------------------------------HHHhCCchHHHhhc--CcEE-EE-EecccccChHHHHHHHHHHHHHHHh
Confidence 1111110 00000 0000 00 000124666555544444333
Q ss_pred cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHhcC-CceEEEEecCchh--------hhh-cCEEEEEe
Q 011281 396 KKSKVLVLDEATASV----DTATDNLIQHTLGQHFS-DCTVITIAHRITS--------VID-SDMVLLLS 451 (489)
Q Consensus 396 ~~~~illlDEpts~l----D~~~~~~i~~~l~~~~~-~~t~i~itH~~~~--------~~~-~d~i~~l~ 451 (489)
.+|+++++||||+.+ |+...+.+.+.++.+.+ +.|+ ++||+... +.. ||-|+.|+
T Consensus 116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 369999999999999 77766778888776543 5655 44565443 233 68888776
No 436
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.28 E-value=1.7e-11 Score=131.32 Aligned_cols=104 Identities=23% Similarity=0.255 Sum_probs=89.6
Q ss_pred hcCCCCCCchHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEE
Q 011281 374 TENGENWSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL 450 (489)
Q Consensus 374 ge~G~~LSgGq~Qrl~laRall~~~--~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l 450 (489)
.....+|||||.|||-||..+-..= =+++||||+.+|=+.--+++.+.|++++ .|.|+|+|.|+.++++.||+|+-+
T Consensus 476 ~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDi 555 (935)
T COG0178 476 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDI 555 (935)
T ss_pred cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEee
Confidence 4566789999999999999997763 3689999999999887778888888765 589999999999999999999988
Q ss_pred ------eCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 451 ------SYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 451 ------~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
.+|+|+.+|+++|+++++++.-.+++.
T Consensus 556 GPgAG~~GGeIv~~Gtp~~i~~~~~SlTG~YLs 588 (935)
T COG0178 556 GPGAGEHGGEIVAEGTPEELLANPESLTGQYLS 588 (935)
T ss_pred CCCCCcCCCEEEEccCHHHHHhCCcchhhHhhc
Confidence 678999999999999987665555553
No 437
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.27 E-value=3.4e-12 Score=127.67 Aligned_cols=166 Identities=23% Similarity=0.276 Sum_probs=110.8
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCC-C-ccCccchhhhcCCCC--
Q 011281 267 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD-P-TMFEGSVHNNLDPLE-- 342 (489)
Q Consensus 267 i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~-~-~lf~~ti~~Ni~~~~-- 342 (489)
.++|+..++||.||-||||-++.++|-.+|.-|.-. ++ .+|..-++|---. - ..|.--+.+|+.-..
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~p--------p~w~~il~~frgselq~yftk~le~~lk~~~kp 167 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NP--------PDWQEILTYFRGSELQNYFTKILEDNLKAIIKP 167 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CC--------cchHHHhhhhhhHHHhhhhhhhccccccCcCCh
Confidence 368999999999999999999999999999877542 11 1222223221100 0 011112233332100
Q ss_pred --------------------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEE
Q 011281 343 --------------------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 402 (489)
Q Consensus 343 --------------------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ill 402 (489)
..+.+...++++..+| +-.+...-..||||+-||.++|-+...++++++
T Consensus 168 Qyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L-----------~~~~~re~~~lsggelqrfaia~~~vq~advyM 236 (592)
T KOG0063|consen 168 QYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDL-----------NNLLDREVEQLSGGELQRFAIAMVCVQKADVYM 236 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHH-----------hhHHHhhhhhcccchhhhhhhhhhhhhhcceeE
Confidence 0000112222222222 222333345689999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeC
Q 011281 403 LDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSY 452 (489)
Q Consensus 403 lDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~ 452 (489)
+|||.|-||...+-+--..|+.+. .++=+|+|.|+++.+.. +|-|..+-+
T Consensus 237 FDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 237 FDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred ecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 999999999988777666776654 57899999999999997 899988854
No 438
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.26 E-value=1.1e-11 Score=124.40 Aligned_cols=144 Identities=16% Similarity=0.122 Sum_probs=99.5
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCC
Q 011281 263 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE 342 (489)
Q Consensus 263 i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~ 342 (489)
+++.+++|+.++|+||+|||||||+++|+++++|..|.+.+.+ ..++.... ++.+.++.+. +-
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~----------~~---- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSK----------GG---- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecC----------CC----
Confidence 4577889999999999999999999999999999999887742 33332211 1112111110 00
Q ss_pred CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 011281 343 EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTL 422 (489)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l 422 (489)
.+ +++-...=.++++|-.+|+++++|||.+ . ...+.+
T Consensus 200 ---------------------------------~~---~~~~~~~~~l~~~Lr~~pd~ii~gE~r~---~----e~~~~l 236 (308)
T TIGR02788 200 ---------------------------------QG---LAKVTPKDLLQSCLRMRPDRIILGELRG---D----EAFDFI 236 (308)
T ss_pred ---------------------------------CC---cCccCHHHHHHHHhcCCCCeEEEeccCC---H----HHHHHH
Confidence 00 0001112256778889999999999996 2 234445
Q ss_pred HHhcCCc-eEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 011281 423 GQHFSDC-TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 423 ~~~~~~~-t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
+....|. +++.++|..+.....||+..|..|++...|...+.+.
T Consensus 237 ~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 237 RAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred HHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 5444454 5699999999777799999999999998888887763
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.21 E-value=9.6e-11 Score=108.68 Aligned_cols=80 Identities=15% Similarity=0.035 Sum_probs=59.9
Q ss_pred hhcCCCCCCchHHH------HHHHHHHhccCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhc-CCceEEEEecCchh--
Q 011281 373 VTENGENWSMGQRQ------LVCLARVLLKKSKVLVLDEATASVD---TATDNLIQHTLGQHF-SDCTVITIAHRITS-- 440 (489)
Q Consensus 373 vge~G~~LSgGq~Q------rl~laRall~~~~illlDEpts~lD---~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-- 440 (489)
+......+|+||+| +...+.+.-.+|+++++||||+.+| ......+.+.+.... .+.|+|+++|....
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 34445567999998 4444444567899999999999999 666666776665543 47899999998765
Q ss_pred -------hhh-cCEEEEEeC
Q 011281 441 -------VID-SDMVLLLSY 452 (489)
Q Consensus 441 -------~~~-~d~i~~l~~ 452 (489)
+.. ||.|+.|+.
T Consensus 145 ~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred cccCcCceeEeeeEEEEEEE
Confidence 454 899999973
No 440
>PRK01156 chromosome segregation protein; Provisional
Probab=99.21 E-value=3.5e-11 Score=137.83 Aligned_cols=76 Identities=24% Similarity=0.321 Sum_probs=66.3
Q ss_pred CCCCCCchHHHHHHH------HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--C-C-ceEEEEecCchhhhhcC
Q 011281 376 NGENWSMGQRQLVCL------ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--S-D-CTVITIAHRITSVIDSD 445 (489)
Q Consensus 376 ~G~~LSgGq~Qrl~l------aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~-~-~t~i~itH~~~~~~~~d 445 (489)
....|||||+||++| ||+++.+|++++|||||++||+.....+.+.+.... . + .|+|+|||+.+.+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 466799999999975 599999999999999999999999998888876432 2 2 48999999999988899
Q ss_pred EEEEEe
Q 011281 446 MVLLLS 451 (489)
Q Consensus 446 ~i~~l~ 451 (489)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 441
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.21 E-value=1.7e-11 Score=136.61 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=60.8
Q ss_pred CCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHh-cCCceEEEEecCchhhhh-cCEEEEEeC
Q 011281 376 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT-LGQH-FSDCTVITIAHRITSVID-SDMVLLLSY 452 (489)
Q Consensus 376 ~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~-l~~~-~~~~t~i~itH~~~~~~~-~d~i~~l~~ 452 (489)
+-+.+|+|++|+..+++++ .+|+++|||||++++|+.....+... +..+ ..+.++|++||..+.... +|+..+ .+
T Consensus 387 ~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v-~~ 464 (782)
T PRK00409 387 SLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV-EN 464 (782)
T ss_pred chhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe-EE
Confidence 3456799999999999999 89999999999999999887777554 3332 247899999999888776 454443 34
Q ss_pred CEEE
Q 011281 453 GLIE 456 (489)
Q Consensus 453 G~i~ 456 (489)
+.+.
T Consensus 465 ~~~~ 468 (782)
T PRK00409 465 ASVE 468 (782)
T ss_pred EEEE
Confidence 5544
No 442
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.19 E-value=1.1e-10 Score=120.76 Aligned_cols=168 Identities=15% Similarity=0.132 Sum_probs=115.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
-++.++++..|.... .+++++ |++.+|++++|+|++|+|||||++.|+|..+|+.|.|.+.|+...
T Consensus 130 ~~~r~~i~~~l~TGi-raID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~------------ 195 (432)
T PRK06793 130 AFEREEITDVFETGI-KSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR------------ 195 (432)
T ss_pred chheechhhccCCCC-EEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc------------
Confidence 356667776665443 377775 999999999999999999999999999999999888877664332
Q ss_pred EEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc------
Q 011281 322 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL------ 395 (489)
Q Consensus 322 ~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall------ 395 (489)
+++|.+ ++.+...++. .|.+=..-.+-|.|+|+|.+.+.+..
T Consensus 196 -----------ev~e~~-----------~~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~ 243 (432)
T PRK06793 196 -----------EVKDFI-----------RKELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFRD 243 (432)
T ss_pred -----------cHHHHH-----------HHHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 122221 1111111111 11122334556999999999999887
Q ss_pred -cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 011281 396 -KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 396 -~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 460 (489)
.++-++++|++|...|+. +.|...+.+.. .|.+..+-+|-...++++.+ .++|.|+..++
T Consensus 244 ~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 244 QGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred cCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 778889999999999997 44444444332 36788887885555555554 47899877665
No 443
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.17 E-value=2e-11 Score=125.99 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=56.3
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-eEEECCEeCCCCChHHhhccceEEcCCC
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIAIDGIDISSIGLHDLRSRLSIIPQDP 327 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 327 (489)
.+|++||+++++||+++|+||||||||||++ .|+.+|++| +|.++|.++...+..++...= +|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 4899999999999999999999999999999 778888888 799999999887655433221 777754
No 444
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.16 E-value=7.3e-11 Score=136.85 Aligned_cols=77 Identities=18% Similarity=0.090 Sum_probs=69.7
Q ss_pred CCCCCchHHHHHHHHHHhcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-c
Q 011281 377 GENWSMGQRQLVCLARVLLK----------KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-S 444 (489)
Q Consensus 377 G~~LSgGq~Qrl~laRall~----------~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~ 444 (489)
..+|||||++|++||+||+. +|++|+|||||++||+++...+++.|..+. .|+||++|||.++.... +
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 46799999999999999985 799999999999999999999999998764 57899999999998887 9
Q ss_pred CEEEEEeCC
Q 011281 445 DMVLLLSYG 453 (489)
Q Consensus 445 d~i~~l~~G 453 (489)
|+|.|++.|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999764
No 445
>PRK03918 chromosome segregation protein; Provisional
Probab=99.14 E-value=8.6e-11 Score=134.54 Aligned_cols=75 Identities=23% Similarity=0.227 Sum_probs=65.9
Q ss_pred CCCCchHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEE
Q 011281 378 ENWSMGQRQ------LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL 450 (489)
Q Consensus 378 ~~LSgGq~Q------rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l 450 (489)
..|||||+| |++|||+++.+|+++||||||++||+.....+.+.|.... .+.|+|+|||+.+....||++++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 469999999 5666778999999999999999999999999999987754 357999999999887779999999
Q ss_pred eC
Q 011281 451 SY 452 (489)
Q Consensus 451 ~~ 452 (489)
+.
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 83
No 446
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.09 E-value=1.4e-10 Score=136.48 Aligned_cols=75 Identities=24% Similarity=0.279 Sum_probs=67.7
Q ss_pred CCCCCCchHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEE
Q 011281 376 NGENWSMGQRQLVCLARVL----LKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL 450 (489)
Q Consensus 376 ~G~~LSgGq~Qrl~laRal----l~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 450 (489)
....||||||||++|||++ +++||++||||||++||+.....+.+.|....++.++|+|||+++.+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 4457999999999999998 47889999999999999999999999998876678999999999998889999755
No 447
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.07 E-value=8.9e-10 Score=99.01 Aligned_cols=129 Identities=19% Similarity=0.127 Sum_probs=77.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCCCcHHHHHH
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWE 351 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 351 (489)
+++|.||+|+||||+++.+++...+..|.+.+-+.+... ...+. +...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~~------------------~~~~----------- 48 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELTE------------------RLIG----------- 48 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHHH------------------HHhh-----------
Confidence 368999999999999999999887766776654432211 11111 0000
Q ss_pred HHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCC----------HHHHHHHHHH
Q 011281 352 ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD----------TATDNLIQHT 421 (489)
Q Consensus 352 ~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD----------~~~~~~i~~~ 421 (489)
... ...+... ..+.......+.++.++++.+++.-.+|+++++||+++-++ ....+.+.+.
T Consensus 49 -~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l 119 (165)
T cd01120 49 -ESL-------KGALDNL-IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELREL 119 (165)
T ss_pred -hhh-------ccccccE-EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 000 0000000 01111112234555567888999999999999999996544 3444555555
Q ss_pred HHHhc-CCceEEEEecCchhh
Q 011281 422 LGQHF-SDCTVITIAHRITSV 441 (489)
Q Consensus 422 l~~~~-~~~t~i~itH~~~~~ 441 (489)
+.... .+.|+|+++|.....
T Consensus 120 ~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 120 LERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHhcCCceEEEEEecCCcc
Confidence 54443 378999999987654
No 448
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.06 E-value=3.1e-10 Score=109.10 Aligned_cols=63 Identities=21% Similarity=0.315 Sum_probs=52.4
Q ss_pred CCCchHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhh
Q 011281 379 NWSMGQRQLVCLARVLLKKS---KVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSV 441 (489)
Q Consensus 379 ~LSgGq~Qrl~laRall~~~---~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~ 441 (489)
.+|.|++|.+.++-+++..+ .++++|||-++|.|...+.+.+.+....+ +.-+|+.||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 46999999999998888776 89999999999999999999999977665 78999999998765
No 449
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.06 E-value=1.2e-09 Score=103.97 Aligned_cols=136 Identities=18% Similarity=0.154 Sum_probs=81.7
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CceEEECCEeCCCCChHHhhccceEEcCCCccCc-cchh
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVH 335 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~ 335 (489)
.+-+|++|+.++|++++|.||||+||||+++.++...-.. -|.- + +- + +..++++ ..+|. -...
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-v---pa-----~--~~~i~~~---~~i~~~~~~~ 83 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-V---PA-----K--SMRLSLV---DRIFTRIGAR 83 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc-c---Cc-----c--ccEeccc---cEEEEecCcc
Confidence 5789999999999999999999999999999998753211 0100 0 00 0 0011111 11121 1122
Q ss_pred hhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 011281 336 NNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD 415 (489)
Q Consensus 336 ~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~ 415 (489)
+++..+...... |-++++-.-....+|+++|||||+++.|+...
T Consensus 84 d~~~~~~StF~~------------------------------------e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg 127 (218)
T cd03286 84 DDIMKGESTFMV------------------------------------ELSETANILRHATPDSLVILDELGRGTSTHDG 127 (218)
T ss_pred cccccCcchHHH------------------------------------HHHHHHHHHHhCCCCeEEEEecccCCCCchHH
Confidence 232211111111 22233222222367999999999999999877
Q ss_pred HHHHHH-HHHhcC--CceEEEEecCchhhhh
Q 011281 416 NLIQHT-LGQHFS--DCTVITIAHRITSVID 443 (489)
Q Consensus 416 ~~i~~~-l~~~~~--~~t~i~itH~~~~~~~ 443 (489)
..+... +..+.+ +.++|++||.++....
T Consensus 128 ~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 128 YAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 666666 443333 7899999999988765
No 450
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.05 E-value=1.2e-09 Score=123.27 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=58.1
Q ss_pred ccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCceEEEEecCchhhh----------hcCEEEEEeCCEEEEecCh
Q 011281 395 LKKSKVLVLDEATASV-DTATDNLIQHTLGQHF-SDCTVITIAHRITSVI----------DSDMVLLLSYGLIEEFDSP 461 (489)
Q Consensus 395 l~~~~illlDEpts~l-D~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~----------~~d~i~~l~~G~i~~~g~~ 461 (489)
..+|+++++|||+.+| |+...+.+.+.++..+ .+.+++++||+++.+. .||++++|.+|++.+.|+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 6889999999988754 4789999999998874 5999999999998776643
No 451
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.04 E-value=2.3e-09 Score=96.87 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=65.1
Q ss_pred CCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEE
Q 011281 380 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 457 (489)
Q Consensus 380 LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 457 (489)
.|.||-=---+.|.+ ++..|+|||||-|+|.|..+-.+...|+++. .|.-+|++||.+=.+.. --+|+-++.|-+.+
T Consensus 130 ~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~~ 208 (233)
T COG3910 130 MSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIEE 208 (233)
T ss_pred hccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCccc
Confidence 499997665666665 5678999999999999999999988888765 57899999999887776 68888888876443
Q ss_pred ecChhH
Q 011281 458 FDSPTR 463 (489)
Q Consensus 458 ~g~~~e 463 (489)
-+++|
T Consensus 209 -~~fe~ 213 (233)
T COG3910 209 -RDFEE 213 (233)
T ss_pred -cchHH
Confidence 34444
No 452
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.02 E-value=5e-10 Score=105.33 Aligned_cols=118 Identities=22% Similarity=0.225 Sum_probs=74.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCCCcHHHHH
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIW 350 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~ 350 (489)
.+.|+||+||||||+++.+++.+++. .|.|..-+.++. +.. ....+++.|.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~---~~~~~~i~q~------------------------ 54 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVH---ESKRSLINQR------------------------ 54 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-ccc---cCccceeeec------------------------
Confidence 57899999999999999999988754 566655443331 100 0001111110
Q ss_pred HHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCce
Q 011281 351 EALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCT 430 (489)
Q Consensus 351 ~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t 430 (489)
.+|.+...++. +++++|..+|+++++||+. |.++...+ ++....|.+
T Consensus 55 ---------------------~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~---l~~a~~G~~ 101 (198)
T cd01131 55 ---------------------EVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLA---LTAAETGHL 101 (198)
T ss_pred ---------------------ccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHH---HHHHHcCCE
Confidence 01111111111 5889999999999999996 66654333 333346889
Q ss_pred EEEEecCchhhhhcCEEEEE
Q 011281 431 VITIAHRITSVIDSDMVLLL 450 (489)
Q Consensus 431 ~i~itH~~~~~~~~d~i~~l 450 (489)
++.++|..+.....||++.+
T Consensus 102 v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 102 VMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred EEEEecCCcHHHHHhHHHhh
Confidence 99999998877667777655
No 453
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.01 E-value=5.5e-10 Score=131.47 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=72.8
Q ss_pred cccchhhcCC------CCCCchHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 011281 368 KLESRVTENG------ENWSMGQRQLVCLARVLL----KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHR 437 (489)
Q Consensus 368 gldt~vge~G------~~LSgGq~Qrl~laRall----~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~ 437 (489)
|++..+...| ..||||||++++||++++ ++||+++||||+++||+.....+.+.|....++.++|+|||+
T Consensus 1057 ~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1057 GLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLR 1136 (1164)
T ss_pred CeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 4555554333 469999999999999997 578999999999999999999999999887667889999999
Q ss_pred chhhhhcCEEEEEeC
Q 011281 438 ITSVIDSDMVLLLSY 452 (489)
Q Consensus 438 ~~~~~~~d~i~~l~~ 452 (489)
...+..||+++.+..
T Consensus 1137 ~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1137 SPMIEYADRAIGVTM 1151 (1164)
T ss_pred HHHHHhcceeEeEEE
Confidence 999988999987753
No 454
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.00 E-value=1.3e-08 Score=88.15 Aligned_cols=117 Identities=34% Similarity=0.332 Sum_probs=80.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCC-ceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCCCcHH
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTA-GLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADE 347 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~ 347 (489)
++..+.|+||+||||||+++.+++.+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999887654 4455544332221111000
Q ss_pred HHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-------
Q 011281 348 EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH------- 420 (489)
Q Consensus 348 ~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~------- 420 (489)
............+++..+..+++|-..+|+++++||+..-.+.........
T Consensus 51 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~ 108 (148)
T smart00382 51 ----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLL 108 (148)
T ss_pred ----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHH
Confidence 112233344568888899999999988899999999999999887765543
Q ss_pred HHHHhcCCceEEEEecC
Q 011281 421 TLGQHFSDCTVITIAHR 437 (489)
Q Consensus 421 ~l~~~~~~~t~i~itH~ 437 (489)
.......+..+|.++|.
T Consensus 109 ~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 109 LLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHhcCCCEEEEEeCC
Confidence 22223346688888884
No 455
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.94 E-value=2.2e-09 Score=124.18 Aligned_cols=77 Identities=23% Similarity=0.167 Sum_probs=66.8
Q ss_pred CCCCCCchHHHHHHHHHHhcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cC
Q 011281 376 NGENWSMGQRQLVCLARVLLK--------KSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SD 445 (489)
Q Consensus 376 ~G~~LSgGq~Qrl~laRall~--------~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d 445 (489)
....|||||+|+++|||||.. +|+++++||||++||+.+...+++.|..+. .|+||++|||..+.... ..
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~ 1025 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPV 1025 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccc
Confidence 346799999999999999995 899999999999999999999999998764 58999999997777666 57
Q ss_pred EEEEEeC
Q 011281 446 MVLLLSY 452 (489)
Q Consensus 446 ~i~~l~~ 452 (489)
+|.|-..
T Consensus 1026 qi~V~k~ 1032 (1047)
T PRK10246 1026 QIKVKKI 1032 (1047)
T ss_pred eEEEEEC
Confidence 7777654
No 456
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.93 E-value=1.4e-08 Score=98.04 Aligned_cols=74 Identities=16% Similarity=0.064 Sum_probs=52.3
Q ss_pred CCCchHHHHHHHHHHhcc--CCCEEEEeCCCCCCC---HHHHHHHHHHHHHh-cCCceEEEEecCchh-------hhh-c
Q 011281 379 NWSMGQRQLVCLARVLLK--KSKVLVLDEATASVD---TATDNLIQHTLGQH-FSDCTVITIAHRITS-------VID-S 444 (489)
Q Consensus 379 ~LSgGq~Qrl~laRall~--~~~illlDEpts~lD---~~~~~~i~~~l~~~-~~~~t~i~itH~~~~-------~~~-~ 444 (489)
..|.++++.+..++..+. +|+++++||||+.+| ......+.+.++.+ ..+.|+++++|.... +.. +
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 346788999999999997 899999999996544 43334444445443 357899999997654 233 5
Q ss_pred CEEEEEeC
Q 011281 445 DMVLLLSY 452 (489)
Q Consensus 445 d~i~~l~~ 452 (489)
|-++.|+.
T Consensus 180 DgvI~L~~ 187 (234)
T PRK06067 180 DVYLKLRA 187 (234)
T ss_pred EEEEEEEe
Confidence 77776763
No 457
>PRK02224 chromosome segregation protein; Provisional
Probab=98.88 E-value=3.7e-09 Score=121.16 Aligned_cols=77 Identities=19% Similarity=0.208 Sum_probs=66.2
Q ss_pred CCCCchHHH------HHHHHHHhccC------CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-ceEEEEecCchhhhh
Q 011281 378 ENWSMGQRQ------LVCLARVLLKK------SKVLVLDEATASVDTATDNLIQHTLGQHFS-D-CTVITIAHRITSVID 443 (489)
Q Consensus 378 ~~LSgGq~Q------rl~laRall~~------~~illlDEpts~lD~~~~~~i~~~l~~~~~-~-~t~i~itH~~~~~~~ 443 (489)
..||||||| |+++||++..+ ++++||||||++||+.....+.+.|..... + .++|+|||+.+.+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 479999999 99999999864 267999999999999999999988877543 4 489999999999988
Q ss_pred cCEEEEEeCCE
Q 011281 444 SDMVLLLSYGL 454 (489)
Q Consensus 444 ~d~i~~l~~G~ 454 (489)
||+++++....
T Consensus 860 ad~~~~~~~~~ 870 (880)
T PRK02224 860 ADDLVRVEKDP 870 (880)
T ss_pred cCeeEEeecCC
Confidence 99999997543
No 458
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.87 E-value=6.4e-09 Score=98.15 Aligned_cols=80 Identities=24% Similarity=0.317 Sum_probs=62.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC------------CCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchh
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVE------------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVH 335 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 335 (489)
++|++++|+||||||||||+++|++.++ |..|+ ++|.++..++.+++++.+ .++.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999986 78888 589888888888777743 577778888888
Q ss_pred hhcCCCCCCcHHHHHHHHHH
Q 011281 336 NNLDPLEEYADEEIWEALDK 355 (489)
Q Consensus 336 ~Ni~~~~~~~~~~~~~~~~~ 355 (489)
+|. ++ ...+.+.+++..
T Consensus 78 ~~~-y~--~~~~~i~~~l~~ 94 (205)
T PRK00300 78 GNY-YG--TPRSPVEEALAA 94 (205)
T ss_pred Ccc-cc--CcHHHHHHHHHc
Confidence 884 32 245555555543
No 459
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.86 E-value=9.2e-09 Score=104.76 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCccEEEEEEEEEECCCCCccee-----------eeeEEeeCCCEEEE
Q 011281 207 RIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLR-----------GLTCTFLGGMKTGI 275 (489)
Q Consensus 207 ~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~-----------~i~l~i~~g~~~~i 275 (489)
...+.+|++++++.++.... .+ ....+.++|+||+|.||+.. .+|+ |+++.|.+|++++|
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~~-----~~---e~~~~ri~Fe~LTf~YP~er-~~Le~~~~~~~~R~id~~~pig~Gq~~~I 173 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNGD-----DP---EKAKNRVLFENLTPLYPNER-LRLETSTEDLSTRVLDLFAPIGKGQRGLI 173 (415)
T ss_pred ccccHhHHHHHhCCCccCCC-----Cc---cccCCCeEEEEeeecCCCcc-ceeecCccccceeeeeeEEEeCCCCEEEE
Confidence 34568999999876543211 11 11235799999999998764 5896 99999999999999
Q ss_pred ECCCCCcHHHHHHHHhcCCCC
Q 011281 276 VGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 276 vG~sGsGKSTl~~~l~g~~~~ 296 (489)
+||+|||||||++.|++.+..
T Consensus 174 vG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 174 VAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred ECCCCCChhHHHHHHHHhhcc
Confidence 999999999999999998764
No 460
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.78 E-value=1.1e-08 Score=106.14 Aligned_cols=86 Identities=20% Similarity=0.281 Sum_probs=70.0
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC---CEeCCCCChHH-
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID---GIDISSIGLHD- 315 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~---g~~~~~~~~~~- 315 (489)
.+.++.++++..|.... .+++.++ ++.+||+++|+||||||||||++.|+++.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~TGi-~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 137 PPAMTRARVETGLRTGV-RVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCCeEeecceEEcCCCc-EEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 34689999999997553 4888885 999999999999999999999999999999999999885 56665544332
Q ss_pred ---hhccceEEcCCC
Q 011281 316 ---LRSRLSIIPQDP 327 (489)
Q Consensus 316 ---~r~~i~~v~Q~~ 327 (489)
.++.|++|+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 235799999954
No 461
>PRK01889 GTPase RsgA; Reviewed
Probab=98.68 E-value=4e-08 Score=100.56 Aligned_cols=98 Identities=20% Similarity=0.300 Sum_probs=75.6
Q ss_pred eeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcC
Q 011281 260 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD 339 (489)
Q Consensus 260 l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~ 339 (489)
++.+.-.+++|++++++|+||+|||||++.|+|...|..|+|.+++...... ..++++.+++|++++|+.....|+.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t---t~~~~l~~l~~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT---TTHRELHPLPSGGLLIDTPGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch---hhhccEEEecCCCeecCCCchhhhc
Confidence 5556667889999999999999999999999999999999999987543322 2356799999999999877777776
Q ss_pred CCCCC-----cHHHHHHHHHHcCCcH
Q 011281 340 PLEEY-----ADEEIWEALDKCQLGN 360 (489)
Q Consensus 340 ~~~~~-----~~~~~~~~~~~~~l~~ 360 (489)
+.... ...++.+..+.|.+.+
T Consensus 262 l~~~~~~l~~~f~~~~~~~~~c~f~~ 287 (356)
T PRK01889 262 LWDAEDGVEETFSDIEELAAQCRFRD 287 (356)
T ss_pred ccCchhhHHHhHHHHHHHHccCCCCC
Confidence 64321 1245666777776654
No 462
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.68 E-value=4.1e-09 Score=112.35 Aligned_cols=156 Identities=15% Similarity=0.104 Sum_probs=93.2
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHH--hcCCCCCCceEEECCEeCCCCChHHhhc---cceEEcCCCccCccchhhhcCC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTL--FRIVEPTAGLIAIDGIDISSIGLHDLRS---RLSIIPQDPTMFEGSVHNNLDP 340 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l--~g~~~~~~G~i~~~g~~~~~~~~~~~r~---~i~~v~Q~~~lf~~ti~~Ni~~ 340 (489)
=+++|..+.|.||+|||||||..-. .|.-++.+.-+++... -+++++++ .+|+-.++..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 3678999999999999999999866 4554445556666553 23444443 34444332210 011111
Q ss_pred CCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHHHHHH
Q 011281 341 LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA--RVLLKKSKVLVLDEATASVDTATDNLI 418 (489)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la--Rall~~~~illlDEpts~lD~~~~~~i 418 (489)
............++..++.+++..++. .+|+|++||+.|+ .++..+|+.. ....+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~i~~-----------~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l 146 (484)
T TIGR02655 88 LDASPDPEGQDVVGGFDLSALIERINY-----------AIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI 146 (484)
T ss_pred EecCchhccccccccCCHHHHHHHHHH-----------HHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence 111111111123334444444444433 3599999999999 6665555433 3556667
Q ss_pred HHHHHHhc-CCceEEEEecCchh--------h-hh-cCEEEEEe
Q 011281 419 QHTLGQHF-SDCTVITIAHRITS--------V-ID-SDMVLLLS 451 (489)
Q Consensus 419 ~~~l~~~~-~~~t~i~itH~~~~--------~-~~-~d~i~~l~ 451 (489)
.+.++.+. .+.|+|+++|+.+. + .. ||.|+.|+
T Consensus 147 ~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 147 FRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 77666543 58999999998764 2 33 79999887
No 463
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.65 E-value=3.6e-07 Score=103.70 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=47.5
Q ss_pred HHHHhccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh
Q 011281 390 LARVLLKKSKVLVLDEATASV-DTATDNLIQHTLGQHF-SDCTVITIAHRITSVID 443 (489)
Q Consensus 390 laRall~~~~illlDEpts~l-D~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ 443 (489)
++|++..+|.++++|||+..| |+...+.+.+.++..+ .+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 678899999999999999999 6889999988887664 47899999999998764
No 464
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.63 E-value=9.3e-08 Score=97.58 Aligned_cols=120 Identities=23% Similarity=0.194 Sum_probs=75.4
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCCCc
Q 011281 267 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA 345 (489)
Q Consensus 267 i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~ 345 (489)
.+++..+.|+||+||||||+++.+++.+++ .+|.|..-..++.-. ......++.|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q-------------------- 174 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQ-------------------- 174 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEc--------------------
Confidence 357899999999999999999999997763 467766544332110 0000000100
Q ss_pred HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 011281 346 DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH 425 (489)
Q Consensus 346 ~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~ 425 (489)
..+|.... + -.=++++||-.+|+++++||+. |+++.....++ .
T Consensus 175 -------------------------~evg~~~~--~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a---a 217 (343)
T TIGR01420 175 -------------------------REVGLDTL--S----FANALRAALREDPDVILIGEMR---DLETVELALTA---A 217 (343)
T ss_pred -------------------------cccCCCCc--C----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---H
Confidence 00111000 0 1125788899999999999997 88877654443 3
Q ss_pred cCCceEEEEecCchhhhhcCEE
Q 011281 426 FSDCTVITIAHRITSVIDSDMV 447 (489)
Q Consensus 426 ~~~~t~i~itH~~~~~~~~d~i 447 (489)
..|.+++.+.|..+.....+|+
T Consensus 218 ~tGh~v~~T~Ha~~~~~~~~Rl 239 (343)
T TIGR01420 218 ETGHLVFGTLHTNSAAQTIERI 239 (343)
T ss_pred HcCCcEEEEEcCCCHHHHHHHH
Confidence 4688999999996665444444
No 465
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=4.8e-08 Score=100.30 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=56.3
Q ss_pred CCCchHHHHHHHHHHhcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhh
Q 011281 379 NWSMGQRQLVCLARVLLK---------KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 442 (489)
Q Consensus 379 ~LSgGq~Qrl~laRall~---------~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 442 (489)
.+|.||+++++||.+|+. +|||+|||||+|+||+...+.+.+.+... +.+++++||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 489999999999999999 99999999999999999999999999653 579999999987654
No 466
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.60 E-value=2.9e-08 Score=102.96 Aligned_cols=81 Identities=22% Similarity=0.331 Sum_probs=62.1
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCce---EEECCEeCCCCChHHh------hccceEEcCCCc
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGL---IAIDGIDISSIGLHDL------RSRLSIIPQDPT 328 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~---i~~~g~~~~~~~~~~~------r~~i~~v~Q~~~ 328 (489)
.+++++ |++.+|++++|+|+||||||||+++|+|+++|+.+. |-.++.++.++..+.+ |..+++++|+..
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 489999 999999999999999999999999999999987643 3344545544332322 456999999987
Q ss_pred cCcc-chhhhcC
Q 011281 329 MFEG-SVHNNLD 339 (489)
Q Consensus 329 lf~~-ti~~Ni~ 339 (489)
.+.. ++.++..
T Consensus 223 ~~~rl~a~e~a~ 234 (434)
T PRK07196 223 PLMRIKATELCH 234 (434)
T ss_pred hhhhHHHHHHHH
Confidence 7754 6776653
No 467
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.59 E-value=9.3e-08 Score=92.61 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=34.9
Q ss_pred hccCCCEEEEeCCCCC------CCHHHHHHHHHHHHHhc--CCceEEEEecCc
Q 011281 394 LLKKSKVLVLDEATAS------VDTATDNLIQHTLGQHF--SDCTVITIAHRI 438 (489)
Q Consensus 394 ll~~~~illlDEpts~------lD~~~~~~i~~~l~~~~--~~~t~i~itH~~ 438 (489)
..++|+++|+| |+++ .|+.....+.+.+.+.. .+.|+++++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 7754 68888778888877643 378999999976
No 468
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.59 E-value=3.9e-07 Score=93.16 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=111.6
Q ss_pred EEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCceEEECCEeCCCCChHHhhccceEEcCC
Q 011281 248 LQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF-RIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQD 326 (489)
Q Consensus 248 v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~-g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~ 326 (489)
|+|..|+.. .+.+ +-|++| ++.|||..=-||||||++|. |.|+---| ||.+. +--.+ +
T Consensus 227 ve~~LP~~g--~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE~-----------VVT~~-~ 285 (448)
T PF09818_consen 227 VEIELPNGG--TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGREF-----------VVTDP-D 285 (448)
T ss_pred EEEECCCCC--EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCceE-----------EEECC-C
Confidence 667776543 3444 478899 99999999999999999985 66664333 33211 10000 0
Q ss_pred CccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCC
Q 011281 327 PTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEA 406 (489)
Q Consensus 327 ~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEp 406 (489)
.. .|| +.| -.....+.+..||.+||.|.||.- ---.+=||---|=-.|..|+-..+++||+||=
T Consensus 286 av----kir--------AED---GR~V~~vDISpFI~~LP~g~dT~~-FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDED 349 (448)
T PF09818_consen 286 AV----KIR--------AED---GRSVEGVDISPFINNLPGGKDTTC-FSTENASGSTSQAANIMEALEAGARLLLIDED 349 (448)
T ss_pred ce----EEE--------ecC---CceEeCccchHHHhhCCCCCCCCc-ccccCCCchHHHHHHHHHHHHcCCCEEEEcCc
Confidence 00 011 001 113445678899999999999983 33345599999999999999999999999999
Q ss_pred CCCCC-----HHHHHHH----------HHHHHHhc--CCceEEEEe-cCchhhhhcCEEEEEeCCEE
Q 011281 407 TASVD-----TATDNLI----------QHTLGQHF--SDCTVITIA-HRITSVIDSDMVLLLSYGLI 455 (489)
Q Consensus 407 ts~lD-----~~~~~~i----------~~~l~~~~--~~~t~i~it-H~~~~~~~~d~i~~l~~G~i 455 (489)
|||-. ...++.+ .+.++.+. .|.++|+|+ ---.++..||+|++|++=+-
T Consensus 350 tsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 350 TSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred ccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 99864 3333333 22222221 355444444 44556677999999998654
No 469
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.57 E-value=4.8e-08 Score=90.92 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=50.2
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCC
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP 327 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 327 (489)
...=+.+.+++|+.++|+||+||||||+++.|+++++|+.|.|.+.+..-..++ .+..++++.|.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~ 79 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPG 79 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecC
Confidence 344466778999999999999999999999999999999999999764322221 234456665544
No 470
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.53 E-value=7e-08 Score=90.62 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=60.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhh-----hcCC--CCCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN-----NLDP--LEEY 344 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~-----Ni~~--~~~~ 344 (489)
+++|+||||||||||.+.|.+++ ..|.+.+-+. |.+....+..+ +..+ ....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~-------------------D~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQ-------------------DSYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEe-------------------cccccccccccHHHhccCCCCCCCcc
Confidence 47999999999999999999987 3333433322 22211111100 1111 1122
Q ss_pred cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 011281 345 ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 413 (489)
Q Consensus 345 ~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~ 413 (489)
+.+.+.+.+......+.+ .-...+.|.|++++..+ .+.+++++|+|.|+...++.
T Consensus 60 ~~~~~~~~l~~l~~~~~~-----------~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 60 DFDLLISHLQDLKNGKSV-----------EIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cHHHHHHHHHHHHCCCCE-----------eccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 334444444443322211 11123457777765444 56889999999999998863
No 471
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.51 E-value=4.8e-08 Score=102.69 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=46.4
Q ss_pred eeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCC
Q 011281 261 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDP 340 (489)
Q Consensus 261 ~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~ 340 (489)
++.++.+++|+++++||||||||||++..|++.+.+..|.. +|+++++|+ |.-+..|++.+
T Consensus 247 ~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~ 307 (484)
T PRK06995 247 DSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRI 307 (484)
T ss_pred cCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHH
Confidence 34444566799999999999999999999999876665531 567888887 44566777753
No 472
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.51 E-value=1.4e-07 Score=96.50 Aligned_cols=89 Identities=25% Similarity=0.229 Sum_probs=63.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCceEEECCEeCCCCChHHhhccceEEcCCC-----ccCccchhhhcC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP---TAGLIAIDGIDISSIGLHDLRSRLSIIPQDP-----TMFEGSVHNNLD 339 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~---~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-----~lf~~ti~~Ni~ 339 (489)
++|..++|+||+||||||++++|++.+.+ ..+.|.....++ ++..+.++...++++|.. .-|..+++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999843 334666555555 466666666678888864 246778888886
Q ss_pred CCCC-------CcHHHHHHHHHHcC
Q 011281 340 PLEE-------YADEEIWEALDKCQ 357 (489)
Q Consensus 340 ~~~~-------~~~~~~~~~~~~~~ 357 (489)
..++ .+.+.+..+++.+.
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~aa~ 235 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEAAL 235 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHHHH
Confidence 5433 24555667777743
No 473
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.48 E-value=1.6e-07 Score=87.29 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=46.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP 327 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 327 (489)
.|+.++|+||||||||||+++|++...| .+.+++..+........++.+++++|+.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 3789999999999999999999998876 5888888887765556667788888874
No 474
>PRK08149 ATP synthase SpaL; Validated
Probab=98.41 E-value=2.5e-07 Score=95.90 Aligned_cols=68 Identities=24% Similarity=0.344 Sum_probs=57.5
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---ceEEECCEeCCCCChHHhh----ccceEEcCC
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA---GLIAIDGIDISSIGLHDLR----SRLSIIPQD 326 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~r----~~i~~v~Q~ 326 (489)
.+++++ +++.+||+++|+|+||+|||||++.|++..+++. |.|-.+|.++.++..+.++ +++++|...
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 489999 9999999999999999999999999999999887 8899999998776554443 456666553
No 475
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.40 E-value=6.8e-07 Score=102.61 Aligned_cols=78 Identities=23% Similarity=0.252 Sum_probs=65.8
Q ss_pred CCCCCCchHHHHHHHH------HHhccC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchhhhhcCE
Q 011281 376 NGENWSMGQRQLVCLA------RVLLKK--SKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITSVIDSDM 446 (489)
Q Consensus 376 ~G~~LSgGq~Qrl~la------Rall~~--~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~ 446 (489)
.-.+|||||+=.++|| ..+..+ -++++|||||.+||+++.+.+.+.|..... +.+||+|||.-+....+|.
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~ 891 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADV 891 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCe
Confidence 3457999998765554 455567 699999999999999999999999987654 6899999999999999999
Q ss_pred EEEEeCC
Q 011281 447 VLLLSYG 453 (489)
Q Consensus 447 i~~l~~G 453 (489)
++.++..
T Consensus 892 ~i~V~k~ 898 (908)
T COG0419 892 RIRVKKD 898 (908)
T ss_pred EEEEEec
Confidence 9988654
No 476
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.35 E-value=2e-06 Score=89.93 Aligned_cols=179 Identities=17% Similarity=0.113 Sum_probs=106.5
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhh
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 337 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 337 (489)
.+++++ +++.+|++++|+|+||+|||||++.|+|..+|+.|.+...|..-+++. ++.+. +..+...++
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~--~~~~~---------~~~~~~l~~ 219 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVR--EFIEH---------DLGEEGLKR 219 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHH--HHHHH---------Hhcccccce
Confidence 489999 999999999999999999999999999999999888777665444321 11110 001000111
Q ss_pred c-CC---CCCCcHHHHHHHHHHcCCcHHHHhccccccchhh-cCCCCCCchHHHHHHHHHHhccCCCEEEEeCC--CCCC
Q 011281 338 L-DP---LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVT-ENGENWSMGQRQLVCLARVLLKKSKVLVLDEA--TASV 410 (489)
Q Consensus 338 i-~~---~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vg-e~G~~LSgGq~Qrl~laRall~~~~illlDEp--ts~l 410 (489)
- .+ .++..-+++..+.-.+-+.++... .|.|-.+= ++-.++ -|.|| .++ +.+.|| +.+.
T Consensus 220 tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr~--A~A~R-Eis---------l~~ge~P~~~Gy 285 (440)
T TIGR01026 220 SVVVVATSDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTRF--AMAQR-EIG---------LAAGEPPATKGY 285 (440)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHHH--HHHHH-HHH---------HhcCCCCccccc
Confidence 1 01 112223444333333333344332 24443321 111111 12222 122 223453 5689
Q ss_pred CHHHHHHHHHHHHHhc-CCc-------eEEEEecCchhhhhcCEEEEEeCCEEEEecChhH
Q 011281 411 DTATDNLIQHTLGQHF-SDC-------TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 411 D~~~~~~i~~~l~~~~-~~~-------t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~e 463 (489)
|+.....+.+.+.+.. .++ ||++-+|++. =.-+|++.-+-+|+|+...+-.+
T Consensus 286 pp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 286 TPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred ChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchhh
Confidence 9998888888777654 346 7888899873 22479999999999998876544
No 477
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.35 E-value=7.1e-06 Score=93.01 Aligned_cols=49 Identities=24% Similarity=0.179 Sum_probs=41.3
Q ss_pred HhccCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhc-CCceEEEEecCchhh
Q 011281 393 VLLKKSKVLVLDEATASVD-TATDNLIQHTLGQHF-SDCTVITIAHRITSV 441 (489)
Q Consensus 393 all~~~~illlDEpts~lD-~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~ 441 (489)
.+-.+|.++++|||...|| +...+.+.+.++..+ .+..++++||.++.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4557899999999999999 788888888887764 477999999998774
No 478
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.34 E-value=7.8e-07 Score=105.39 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=55.0
Q ss_pred CCCCCCchHHHHHH----HHHH--------hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchh
Q 011281 376 NGENWSMGQRQLVC----LARV--------LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITS 440 (489)
Q Consensus 376 ~G~~LSgGq~Qrl~----laRa--------ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 440 (489)
....||||||||++ +|++ +..+|++++|||||+++|+.....+++.+..+ +.++|++||++..
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~Wg 1318 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREWG 1318 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchhc
Confidence 34679999999996 5755 55899999999999999999999999999877 7899999998754
No 479
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.32 E-value=5.5e-07 Score=86.53 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=30.5
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCceEEECC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLF-RIVEPTAGLIAIDG 305 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~-g~~~~~~G~i~~~g 305 (489)
-+++|+.+.|.||+|||||||...++ ....+.++-+.+..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 47899999999999999999988654 23345555666655
No 480
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.31 E-value=1.7e-06 Score=101.73 Aligned_cols=43 Identities=28% Similarity=0.311 Sum_probs=35.9
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCceEEECC
Q 011281 263 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI-VEPTAGLIAIDG 305 (489)
Q Consensus 263 i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~-~~~~~G~i~~~g 305 (489)
+++..+++++++|+|++|+|||||++.+.+- ....+|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 4567778999999999999999999999544 455689998876
No 481
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.30 E-value=3.6e-06 Score=95.41 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=45.3
Q ss_pred CchHHHHHHHHHHhcc--CCCEEEEeCC---CCCCCHHH-HHHHHHHHHHhcCCceEEEEecCchhhhhcCE
Q 011281 381 SMGQRQLVCLARVLLK--KSKVLVLDEA---TASVDTAT-DNLIQHTLGQHFSDCTVITIAHRITSVIDSDM 446 (489)
Q Consensus 381 SgGq~Qrl~laRall~--~~~illlDEp---ts~lD~~~-~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ 446 (489)
|--+.....+++++-+ +++++|+||| |+.+|... ...+.+.+.+. .+.+++++||..+....+++
T Consensus 668 STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~-~~~~~l~aTH~~el~~l~~~ 738 (854)
T PRK05399 668 STFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDK-IGAKTLFATHYHELTELEEK 738 (854)
T ss_pred ccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhc-CCceEEEEechHHHHHHhhh
Confidence 5455556667776654 8999999999 99999654 33455555442 25799999999776555554
No 482
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.29 E-value=6.2e-07 Score=82.65 Aligned_cols=53 Identities=25% Similarity=0.329 Sum_probs=40.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc-cceEEcCCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS-RLSIIPQDP 327 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~-~i~~v~Q~~ 327 (489)
+||.++|+|+|||||||++++|++++.| +.++|.++... ..+|+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~ 55 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDE 55 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcc
Confidence 5999999999999999999999999887 68899877432 23333 345555554
No 483
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.29 E-value=1.2e-06 Score=80.85 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=42.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE-----------CCEeCCCCChHHhh-----ccceEEcCCCccCcc
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI-----------DGIDISSIGLHDLR-----SRLSIIPQDPTMFEG 332 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~-----------~g~~~~~~~~~~~r-----~~i~~v~Q~~~lf~~ 332 (489)
|+.++|+|||||||||+++.|++.+.+. |.+.+ +|.+....+.+.+. +.++.+.|.+.++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 65554 55555444444432 236666666544433
No 484
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.28 E-value=8.9e-08 Score=105.39 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=23.8
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
++++| +.|+||+|+||||+++.+++...
T Consensus 183 ~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 183 KIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred CCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 44556 99999999999999999998653
No 485
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.27 E-value=1.1e-06 Score=82.67 Aligned_cols=106 Identities=20% Similarity=0.232 Sum_probs=62.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCCCcHHHHHH
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWE 351 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 351 (489)
+++|+||+|||||||++.+.+.+++..| +.+...+........+....++++|+..+. +..|-+.......+ -
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~~---~ 75 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILG---VETGGCPHTAIRED---A 75 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceeh---hhcCCCccceeccC---H
Confidence 6899999999999999999999887655 545445555444555666778888887642 11121111111011 1
Q ss_pred HHHHcCCcHHHHhccccccchhhcCCCCCCchH
Q 011281 352 ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 384 (489)
Q Consensus 352 ~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq 384 (489)
++..+.+.+++.+++.+..+.|+..|..+|.-.
T Consensus 76 ~~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 76 SMNLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 112223334555556555566766666665544
No 486
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.26 E-value=4.2e-07 Score=86.01 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=26.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 296 (489)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999998764
No 487
>PLN02796 D-glycerate 3-kinase
Probab=98.26 E-value=3.4e-07 Score=91.96 Aligned_cols=61 Identities=25% Similarity=0.330 Sum_probs=50.6
Q ss_pred cceeeeeEEe---eCCCE-----EEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCChHHhhc
Q 011281 258 LVLRGLTCTF---LGGMK-----TGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 258 ~~l~~i~l~i---~~g~~-----~~ivG~sGsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~r~ 318 (489)
++++++++.+ ++|+. ++|+|++|||||||++.|.+++.+. .|.|.+||..+.......+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 4788888887 67777 9999999999999999999999874 688999998876655555554
No 488
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.26 E-value=5.8e-07 Score=93.57 Aligned_cols=100 Identities=23% Similarity=0.336 Sum_probs=71.1
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEE---CCEeCCCCChHHhh---ccceEE-----cCC
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAI---DGIDISSIGLHDLR---SRLSII-----PQD 326 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-~~G~i~~---~g~~~~~~~~~~~r---~~i~~v-----~Q~ 326 (489)
+++++ |++.+|++++|+|+||||||||++.|+|+.++ +.|.|.+ +|.++.++..+.++ ...+++ +|+
T Consensus 154 aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~ 232 (442)
T PRK06315 154 CIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQS 232 (442)
T ss_pred EEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCC
Confidence 78887 99999999999999999999999999998854 4466666 45666655544444 235555 887
Q ss_pred Ccc------CccchhhhcCCC-CC-----CcHHHHHHHHHHcCCc
Q 011281 327 PTM------FEGSVHNNLDPL-EE-----YADEEIWEALDKCQLG 359 (489)
Q Consensus 327 ~~l------f~~ti~~Ni~~~-~~-----~~~~~~~~~~~~~~l~ 359 (489)
|.. ...++.|.++.. .+ -+..++.++++.+++.
T Consensus 233 p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 233 SQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 742 223677877532 22 1346778888888773
No 489
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=98.25 E-value=6.3e-06 Score=82.88 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=105.6
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhcC-CC--CCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCC
Q 011281 264 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRI-VE--PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDP 340 (489)
Q Consensus 264 ~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~-~~--~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~ 340 (489)
-+-|++| ++.|+|++=-|||||+.+|..= ++ |-+|+=++ +++.. .+++. .+|.
T Consensus 237 gmgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipGDGRE~v----VTd~~-------lakae----------ae~g-- 292 (554)
T COG3044 237 GMGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPGDGRERV----VTDVK-------LAKAE----------AEEG-- 292 (554)
T ss_pred ccCCCcc-eEEEecCCccchhHHHHHHHhcccccCCCCCceEE----Eehhh-------hhhhh----------cccc--
Confidence 3568889 9999999999999999999653 22 33332221 00000 00000 0111
Q ss_pred CCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH-----
Q 011281 341 LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATD----- 415 (489)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~----- 415 (489)
..+.-..+..|+++||.|-||+-.-.|. =||-..|=-.|=||+-..++++++||=||+..--..
T Consensus 293 ----------r~vsg~D~SlFi~~LPggkdTp~fvtgd-ASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlak 361 (554)
T COG3044 293 ----------RCVSGLDLSLFINHLPGGKDTPDFVTGD-ASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAK 361 (554)
T ss_pred ----------eeeeccchHHHHHhCCCCCCCcccccCC-CCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHH
Confidence 1122234567999999999998765442 499999999999999999999999999998753211
Q ss_pred --------HHHHHHHHHhcC-CceEEEEecCchhhhh-cCEEEEEeCCEEE
Q 011281 416 --------NLIQHTLGQHFS-DCTVITIAHRITSVID-SDMVLLLSYGLIE 456 (489)
Q Consensus 416 --------~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 456 (489)
..+.+.+...+. +.++|.||--+..+.. +||+++|++-+-.
T Consensus 362 e~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 362 ESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred HhcCcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 123333433333 2688888888776655 9999999998755
No 490
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.25 E-value=3.7e-06 Score=92.09 Aligned_cols=110 Identities=18% Similarity=0.249 Sum_probs=69.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCC--------ceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTA--------GLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDP 340 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~--------G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~ 340 (489)
..+.++|+||+||||||+++++.++..+.. +-+.+||.++. .+...+. ++ +|. .+.++
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~--------~~-llg-~~~~~--- 239 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT--------NP-LLG-SVHDP--- 239 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh--------HH-hcC-CccHH---
Confidence 346799999999999999999999886544 34778776552 2222211 11 111 11110
Q ss_pred CCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 011281 341 LEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQH 420 (489)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~ 420 (489)
..+...+.++..++.+....+. ..+||| +|+||| +..||+..+..+.+
T Consensus 240 ----~~~~a~~~l~~~gl~~~~~g~v-----------~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 240 ----IYQGARRDLAETGVPEPKTGLV-----------TDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred ----HHHHHHHHHHHcCCCchhcCch-----------hhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 1123344566666654333222 235777 999999 79999999999988
Q ss_pred HHHH
Q 011281 421 TLGQ 424 (489)
Q Consensus 421 ~l~~ 424 (489)
.+.+
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 8864
No 491
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.25 E-value=1.5e-06 Score=80.86 Aligned_cols=71 Identities=13% Similarity=0.068 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEecCchh--hh-hcCEEEEEeCCE
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS-DCTVITIAHRITS--VI-DSDMVLLLSYGL 454 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~--~~-~~d~i~~l~~G~ 454 (489)
.|+-+|..||.++..+|+.+..+| +-+||...+.+.+.+.+... +.++++-+|.+.. +. .||++++++.+.
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~ 134 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSP 134 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence 377899999999999999988777 78999999999988877643 4699999999854 43 499999988764
No 492
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.22 E-value=6e-06 Score=71.98 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=38.5
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc------CCceEEEEecCch
Q 011281 385 RQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF------SDCTVITIAHRIT 439 (489)
Q Consensus 385 ~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~------~~~t~i~itH~~~ 439 (489)
.+.....++...++.++++||.-.. ++.....+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4556667777889999999997765 5555666767666542 4567888888654
No 493
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=98.18 E-value=6.7e-06 Score=81.08 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=63.7
Q ss_pred cccccchhhcCC----CCCCchHHHHHHHHHHhc----------------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 011281 366 EGKLESRVTENG----ENWSMGQRQLVCLARVLL----------------KKSKVLVLDEATASVDTATDNLIQHTLGQH 425 (489)
Q Consensus 366 ~~gldt~vge~G----~~LSgGq~Qrl~laRall----------------~~~~illlDEpts~lD~~~~~~i~~~l~~~ 425 (489)
|+-+-+..+++| ++||.|.|-.+|++--.. .-|-++|+||--=.|-|.-++.|.+.+...
T Consensus 244 ~h~l~mk~~~~geI~ls~lSdg~Rt~~Alvadiarr~v~LNp~Lsd~la~~tpgivLiDeIdlflhP~WQQqi~qkL~sa 323 (440)
T COG3950 244 KHELFMKHGNGGEIPLSELSDGPRTKFALVADIARRCVVLNPYLSDALAKLTPGIVLIDEIDLFLHPKWQQQINQKLLSA 323 (440)
T ss_pred chHHHHccCCCCccchhhcccchHHHHHHHHHHHHHHhhcChhhcchhhcCCCceEEeehhhhhcCHHHHHHHHHHHHhh
Confidence 344444455555 469999999998874332 236799999999999999999999999888
Q ss_pred cCCceEEEEecCchhhhh--cCEEEEEe
Q 011281 426 FSDCTVITIAHRITSVID--SDMVLLLS 451 (489)
Q Consensus 426 ~~~~t~i~itH~~~~~~~--~d~i~~l~ 451 (489)
++.--.|+.||.+..+.. ..+|-+++
T Consensus 324 Fp~IQfIvstHsP~vlsTv~~esIrlln 351 (440)
T COG3950 324 FPEIQFIVSTHSPFVLSTVNGESIRLLN 351 (440)
T ss_pred chhhhhhhhcCCceEEEecccceeEEee
Confidence 888888999999766654 34444443
No 494
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=6.5e-06 Score=84.18 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=32.2
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
++++.++.+++|++++++||+|+||||++..|++.+
T Consensus 126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 566677788999999999999999999999999865
No 495
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.16 E-value=1.8e-06 Score=79.53 Aligned_cols=26 Identities=38% Similarity=0.555 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999764
No 496
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=98.16 E-value=2.2e-05 Score=79.28 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=54.3
Q ss_pred CCchHHHHHHHHHH---------hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhh-hc---CE
Q 011281 380 WSMGQRQLVCLARV---------LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI-DS---DM 446 (489)
Q Consensus 380 LSgGq~Qrl~laRa---------ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~---d~ 446 (489)
.|-||+.-+++|-- .-.++|||+|||-+|.||..-+..+.+. ... ...|.|..|+. +.+. .- -+
T Consensus 276 ~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~~-~~Q~fvT~t~~-~~~~~~~~~~~~ 352 (363)
T COG1195 276 ASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IEL-GVQVFVTTTDL-EDIDDNLDENAQ 352 (363)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-ccc-CCeEEEEccCH-HHhhhhhhccce
Confidence 79999998887643 4467899999999999999999998887 322 23455555544 4443 33 38
Q ss_pred EEEEeCCEEE
Q 011281 447 VLLLSYGLIE 456 (489)
Q Consensus 447 i~~l~~G~i~ 456 (489)
++.+++|+|.
T Consensus 353 ~f~V~~g~i~ 362 (363)
T COG1195 353 MFHVEDGKIT 362 (363)
T ss_pred EEEEecceec
Confidence 9999999874
No 497
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.13 E-value=3.8e-06 Score=78.17 Aligned_cols=50 Identities=10% Similarity=0.199 Sum_probs=36.4
Q ss_pred hcCCCCCCchHHHHHH--HHHHhcc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 011281 374 TENGENWSMGQRQLVC--LARVLLK-KSKVLVLDEATASVDTATDNLIQHTLGQHFS 427 (489)
Q Consensus 374 ge~G~~LSgGq~Qrl~--laRall~-~~~illlDEpts~lD~~~~~~i~~~l~~~~~ 427 (489)
....-.+|+||+|++. +++.+-. +++++ |||++|.+.-+.+.+.|.++.+
T Consensus 142 ~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 142 LTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhc
Confidence 3334457999999877 6666644 34443 9999999999999988887654
No 498
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.12 E-value=2.4e-06 Score=90.66 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=56.0
Q ss_pred EEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 011281 245 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 309 (489)
Q Consensus 245 ~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~ 309 (489)
++|++..|+.. .+++++++.+..|+.++++||+|||||||++.|.|+++|.+|++.+++..+.
T Consensus 187 ~~d~~~v~Gq~--~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQE--QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECcH--HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 45788778543 4899999999999999999999999999999999999999999999886663
No 499
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.11 E-value=2.9e-06 Score=88.24 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=55.8
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeC
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 308 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~ 308 (489)
.++.++++..+.... .+++++ |++.+||+++|+|+||+|||||++.|+|...|+.|.+.+.|..-
T Consensus 129 ~~~r~~v~~~l~tGi-~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRg 193 (433)
T PRK07594 129 AMVRQPITQPLMTGI-RAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG 193 (433)
T ss_pred ceeccCHhheeCCCc-eeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCc
Confidence 467777777775443 489999 99999999999999999999999999999999999888777543
No 500
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.10 E-value=1.4e-05 Score=76.87 Aligned_cols=78 Identities=22% Similarity=0.200 Sum_probs=47.3
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhcC-CCC------CCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcC
Q 011281 267 FLGGMKTGIVGRTGSGKSTLIQTLFRI-VEP------TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD 339 (489)
Q Consensus 267 i~~g~~~~ivG~sGsGKSTl~~~l~g~-~~~------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~ 339 (489)
+++|+++.|+||+|||||||+..++.. ..| .++.++++..+ ..+.+.+.+.. |.......++.+|+.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i~ 89 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNIY 89 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCEE
Confidence 778999999999999999999988733 233 36778887754 23344333321 111112234566666
Q ss_pred CCCCCcHHHHH
Q 011281 340 PLEEYADEEIW 350 (489)
Q Consensus 340 ~~~~~~~~~~~ 350 (489)
+.+..+.+++.
T Consensus 90 ~~~~~~~~~l~ 100 (235)
T cd01123 90 VARAYNSDHQL 100 (235)
T ss_pred EEecCCHHHHH
Confidence 54444444433
Done!