Query 011281
Match_columns 489
No_of_seqs 209 out of 2608
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 04:54:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 7.1E-87 2.4E-91 778.8 56.7 476 1-479 175-653 (1321)
2 4f4c_A Multidrug resistance pr 100.0 4.2E-87 1.4E-91 780.7 40.9 476 1-480 833-1317(1321)
3 3qf4_A ABC transporter, ATP-bi 100.0 3.3E-83 1.1E-87 694.0 54.5 477 1-481 102-580 (587)
4 4a82_A Cystic fibrosis transme 100.0 3.4E-83 1.2E-87 693.4 49.4 475 1-479 100-576 (578)
5 3b5x_A Lipid A export ATP-bind 100.0 1E-81 3.5E-86 682.6 60.0 474 1-480 104-580 (582)
6 3qf4_B Uncharacterized ABC tra 100.0 3.8E-83 1.3E-87 695.3 47.2 475 1-481 116-592 (598)
7 3b60_A Lipid A export ATP-bind 100.0 1E-81 3.4E-86 682.6 57.2 473 1-479 104-579 (582)
8 2yl4_A ATP-binding cassette SU 100.0 3.4E-81 1.2E-85 680.1 55.9 478 1-481 101-585 (595)
9 3g5u_A MCG1178, multidrug resi 100.0 4.9E-79 1.7E-83 711.1 43.4 476 1-479 147-625 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 3.1E-75 1.1E-79 679.1 43.8 481 1-484 788-1275(1284)
11 3nh6_A ATP-binding cassette SU 100.0 3.5E-67 1.2E-71 522.0 26.0 277 201-482 15-292 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1.1E-58 3.7E-63 449.2 30.5 240 240-479 5-245 (247)
13 2ghi_A Transport protein; mult 100.0 8.9E-57 3E-61 439.0 27.7 237 242-480 17-255 (260)
14 1mv5_A LMRA, multidrug resista 100.0 1.2E-57 4E-62 441.3 21.0 233 243-477 2-236 (243)
15 2ixe_A Antigen peptide transpo 100.0 2.7E-56 9.2E-61 438.0 25.9 239 241-480 15-258 (271)
16 3gd7_A Fusion complex of cysti 100.0 2.5E-56 8.5E-61 457.4 25.7 236 237-473 14-249 (390)
17 2pze_A Cystic fibrosis transme 100.0 3.5E-54 1.2E-58 413.2 25.0 221 242-476 6-227 (229)
18 2cbz_A Multidrug resistance-as 100.0 2.7E-54 9.4E-59 415.9 23.1 225 242-480 3-230 (237)
19 3tui_C Methionine import ATP-b 100.0 1.4E-52 4.9E-57 424.0 23.1 224 241-475 23-262 (366)
20 3gfo_A Cobalt import ATP-bindi 100.0 2.3E-52 7.8E-57 410.2 21.1 214 242-467 7-234 (275)
21 3tif_A Uncharacterized ABC tra 100.0 4.3E-52 1.5E-56 400.1 21.8 213 243-465 2-233 (235)
22 1ji0_A ABC transporter; ATP bi 100.0 3.5E-51 1.2E-55 395.1 23.8 214 242-467 6-229 (240)
23 2olj_A Amino acid ABC transpor 100.0 5E-51 1.7E-55 398.3 24.9 218 242-472 24-254 (263)
24 3fvq_A Fe(3+) IONS import ATP- 100.0 5.5E-51 1.9E-55 412.3 25.2 221 242-475 4-237 (359)
25 4g1u_C Hemin import ATP-bindin 100.0 5E-51 1.7E-55 399.3 23.1 213 242-467 11-238 (266)
26 3rlf_A Maltose/maltodextrin im 100.0 7.2E-51 2.5E-55 414.1 23.9 218 242-474 3-231 (381)
27 1b0u_A Histidine permease; ABC 100.0 8E-51 2.7E-55 397.4 23.0 218 242-472 6-248 (262)
28 1vpl_A ABC transporter, ATP-bi 100.0 3.2E-50 1.1E-54 391.4 24.7 213 241-467 14-236 (256)
29 1g6h_A High-affinity branched- 100.0 1.8E-50 6.1E-55 394.0 23.0 209 242-463 7-239 (257)
30 2pcj_A ABC transporter, lipopr 100.0 1.6E-50 5.5E-55 386.4 20.6 206 242-460 4-222 (224)
31 2yyz_A Sugar ABC transporter, 100.0 5.4E-50 1.8E-54 406.2 25.6 216 242-472 3-229 (359)
32 2yz2_A Putative ABC transporte 100.0 6E-50 2E-54 392.2 24.5 211 243-467 3-228 (266)
33 2onk_A Molybdate/tungstate ABC 100.0 5.3E-50 1.8E-54 386.3 22.3 208 243-468 2-218 (240)
34 1z47_A CYSA, putative ABC-tran 100.0 6.9E-50 2.4E-54 404.5 23.3 218 241-472 13-241 (355)
35 2bbs_A Cystic fibrosis transme 100.0 3.7E-50 1.3E-54 397.4 20.8 209 241-467 39-248 (290)
36 2it1_A 362AA long hypothetical 100.0 5.6E-50 1.9E-54 406.5 22.5 216 242-472 3-229 (362)
37 1v43_A Sugar-binding transport 100.0 1.3E-49 4.5E-54 405.1 25.2 216 242-472 11-237 (372)
38 1oxx_K GLCV, glucose, ABC tran 100.0 5.1E-50 1.7E-54 406.4 22.0 218 242-472 3-236 (353)
39 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-49 3.8E-54 402.6 24.0 214 243-472 2-223 (348)
40 2ihy_A ABC transporter, ATP-bi 100.0 4.7E-50 1.6E-54 394.9 19.8 213 242-467 21-253 (279)
41 2qi9_C Vitamin B12 import ATP- 100.0 3E-49 1E-53 383.0 22.0 207 242-466 4-222 (249)
42 1g29_1 MALK, maltose transport 100.0 2.4E-49 8.3E-54 403.9 22.4 216 242-472 3-235 (372)
43 2d2e_A SUFC protein; ABC-ATPas 100.0 3.5E-49 1.2E-53 383.4 19.1 209 242-463 3-230 (250)
44 2zu0_C Probable ATP-dependent 100.0 3.6E-48 1.2E-52 379.6 20.7 213 242-466 20-254 (267)
45 2pjz_A Hypothetical protein ST 100.0 3.5E-48 1.2E-52 378.3 20.2 206 243-467 2-216 (263)
46 2nq2_C Hypothetical ABC transp 100.0 8.5E-48 2.9E-52 373.9 20.5 200 242-467 4-218 (253)
47 1sgw_A Putative ABC transporte 100.0 5.1E-47 1.7E-51 358.9 15.7 193 242-455 10-210 (214)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 1.3E-38 4.5E-43 340.6 15.5 199 241-466 286-493 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 1.9E-38 6.6E-43 342.8 16.3 199 241-466 356-563 (607)
50 2iw3_A Elongation factor 3A; a 100.0 1E-37 3.6E-42 348.3 17.0 197 242-460 671-981 (986)
51 3ozx_A RNAse L inhibitor; ATP 100.0 1.3E-37 4.4E-42 332.2 16.2 200 241-466 268-477 (538)
52 3bk7_A ABC transporter ATP-bin 100.0 5.2E-37 1.8E-41 331.7 12.2 193 246-453 95-304 (607)
53 3j16_B RLI1P; ribosome recycli 100.0 1.8E-36 6.2E-41 326.9 15.3 197 246-467 350-560 (608)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 5.3E-37 1.8E-41 328.2 9.8 195 244-453 22-234 (538)
55 3ux8_A Excinuclease ABC, A sub 100.0 7E-36 2.4E-40 328.6 16.4 206 257-476 31-308 (670)
56 2iw3_A Elongation factor 3A; a 100.0 8.3E-35 2.8E-39 325.0 24.5 196 241-466 434-635 (986)
57 2v9p_A Replication protein E1; 100.0 1.5E-40 5E-45 329.6 -19.7 214 194-478 58-274 (305)
58 3ux8_A Excinuclease ABC, A sub 100.0 7.3E-36 2.5E-40 328.4 14.6 209 257-476 335-650 (670)
59 3pih_A Uvrabc system protein A 100.0 2.5E-34 8.5E-39 320.9 18.1 208 258-475 598-911 (916)
60 3j16_B RLI1P; ribosome recycli 100.0 8.8E-35 3E-39 313.8 12.1 197 247-456 82-300 (608)
61 3ozx_A RNAse L inhibitor; ATP 100.0 5.3E-35 1.8E-39 312.1 8.5 192 247-454 4-214 (538)
62 4aby_A DNA repair protein RECN 100.0 4.7E-33 1.6E-37 289.2 13.9 200 259-459 50-381 (415)
63 2vf7_A UVRA2, excinuclease ABC 100.0 3.3E-32 1.1E-36 301.4 17.4 220 241-477 501-838 (842)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 5.5E-36 1.9E-40 313.7 -12.2 189 243-466 119-338 (460)
65 2r6f_A Excinuclease ABC subuni 100.0 1.8E-31 6.1E-36 296.0 18.1 212 241-469 628-945 (972)
66 2ygr_A Uvrabc system protein A 100.0 1.1E-30 3.6E-35 290.8 18.8 211 241-469 646-963 (993)
67 1e69_A Chromosome segregation 100.0 5.1E-29 1.7E-33 250.5 13.4 204 261-465 16-312 (322)
68 3b85_A Phosphate starvation-in 100.0 1.2E-30 4E-35 245.8 -3.5 158 258-455 14-172 (208)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.7E-26 5.7E-31 235.9 18.0 83 375-457 275-364 (365)
70 1ye8_A Protein THEP1, hypothet 99.9 1.1E-27 3.9E-32 220.1 3.0 147 272-457 2-159 (178)
71 4gp7_A Metallophosphoesterase; 99.9 5.7E-28 1.9E-32 220.7 -0.8 149 262-447 1-168 (171)
72 1z6g_A Guanylate kinase; struc 99.9 3E-29 1E-33 238.2 -10.4 168 259-452 12-193 (218)
73 1tq4_A IIGP1, interferon-induc 99.9 7.2E-28 2.5E-32 248.1 -5.2 172 258-453 37-254 (413)
74 2pt7_A CAG-ALFA; ATPase, prote 99.9 1E-27 3.6E-32 241.3 -4.0 141 245-455 151-292 (330)
75 2dpy_A FLII, flagellum-specifi 99.9 1.1E-27 3.6E-32 249.6 -11.0 195 241-466 130-344 (438)
76 3b9q_A Chloroplast SRP recepto 99.9 1.2E-25 4.2E-30 223.3 -2.7 173 261-456 91-285 (302)
77 3sop_A Neuronal-specific septi 99.9 2.1E-25 7E-30 218.4 -2.3 146 272-442 4-154 (270)
78 1znw_A Guanylate kinase, GMP k 99.9 6E-26 2.1E-30 213.5 -8.0 166 258-451 10-202 (207)
79 2o5v_A DNA replication and rep 99.9 3.8E-23 1.3E-27 209.7 9.4 81 379-464 265-354 (359)
80 2og2_A Putative signal recogni 99.9 1.5E-24 5.3E-29 219.5 -2.2 173 261-456 148-342 (359)
81 3aez_A Pantothenate kinase; tr 99.9 3.3E-25 1.1E-29 221.2 -8.5 173 241-454 42-246 (312)
82 2obl_A ESCN; ATPase, hydrolase 99.9 1.5E-23 5.2E-28 212.0 -1.6 195 241-465 44-254 (347)
83 2f1r_A Molybdopterin-guanine d 99.9 2.3E-24 7.7E-29 196.5 -8.0 111 271-401 3-125 (171)
84 3qkt_A DNA double-strand break 99.8 3E-20 1E-24 187.8 19.7 75 377-451 246-327 (339)
85 1tf7_A KAIC; homohexamer, hexa 99.8 2.7E-23 9.2E-28 222.2 -4.6 172 251-453 20-210 (525)
86 3pih_A Uvrabc system protein A 99.8 5.5E-22 1.9E-26 221.6 5.0 170 286-469 384-563 (916)
87 2eyu_A Twitching motility prot 99.8 3E-22 1E-26 195.0 2.1 131 258-451 15-146 (261)
88 2i3b_A HCR-ntpase, human cance 99.8 2.7E-23 9.4E-28 192.5 -5.0 159 270-459 1-169 (189)
89 4ad8_A DNA repair protein RECN 99.8 2.7E-21 9.4E-26 206.3 8.7 76 378-453 395-473 (517)
90 2ewv_A Twitching motility prot 99.8 2.6E-24 8.8E-29 220.1 -14.2 174 259-440 127-353 (372)
91 2o8b_B DNA mismatch repair pro 99.8 2.6E-21 8.7E-26 219.6 7.4 170 241-461 749-937 (1022)
92 1cr0_A DNA primase/helicase; R 99.8 2.1E-21 7.2E-26 192.4 4.1 181 258-455 23-237 (296)
93 2vf7_A UVRA2, excinuclease ABC 99.8 9.8E-21 3.4E-25 209.9 8.8 183 278-474 270-483 (842)
94 1lvg_A Guanylate kinase, GMP k 99.8 2.3E-23 7.7E-28 194.7 -11.0 158 268-452 2-173 (198)
95 1tf7_A KAIC; homohexamer, hexa 99.8 3.9E-20 1.3E-24 197.7 9.6 152 264-454 275-444 (525)
96 2jeo_A Uridine-cytidine kinase 99.8 4.6E-22 1.6E-26 191.9 -6.7 165 257-466 12-187 (245)
97 2ehv_A Hypothetical protein PH 99.8 2.5E-21 8.6E-26 186.1 -2.0 162 266-452 26-207 (251)
98 2r6f_A Excinuclease ABC subuni 99.8 6.5E-20 2.2E-24 203.7 7.9 97 374-470 499-604 (972)
99 1lw7_A Transcriptional regulat 99.8 2.7E-21 9.3E-26 197.5 -3.7 82 259-342 157-248 (365)
100 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 3.9E-19 1.3E-23 157.8 10.7 88 368-455 41-142 (148)
101 1w1w_A Structural maintenance 99.8 1.4E-19 5E-24 188.6 9.3 73 379-451 333-410 (430)
102 4a74_A DNA repair and recombin 99.8 6.9E-20 2.4E-24 173.8 5.4 148 266-454 21-201 (231)
103 3thx_A DNA mismatch repair pro 99.8 1.7E-19 5.8E-24 202.4 9.4 165 242-464 631-811 (934)
104 1ewq_A DNA mismatch repair pro 99.8 5.3E-20 1.8E-24 203.0 5.1 145 241-444 549-704 (765)
105 1pui_A ENGB, probable GTP-bind 99.8 1E-20 3.4E-25 177.0 -0.6 169 243-426 4-197 (210)
106 1pzn_A RAD51, DNA repair and r 99.8 1.6E-20 5.5E-25 190.4 0.9 166 259-465 119-314 (349)
107 3asz_A Uridine kinase; cytidin 99.8 5.6E-22 1.9E-26 186.4 -9.2 140 266-438 2-161 (211)
108 3szr_A Interferon-induced GTP- 99.8 2.6E-21 8.8E-26 209.8 -6.0 190 242-465 10-236 (608)
109 2ygr_A Uvrabc system protein A 99.8 1.6E-18 5.5E-23 193.3 12.5 100 373-472 515-623 (993)
110 3jvv_A Twitching mobility prot 99.8 1.6E-19 5.5E-24 183.0 4.0 146 246-452 92-245 (356)
111 2qnr_A Septin-2, protein NEDD5 99.7 8.2E-20 2.8E-24 181.5 0.1 164 246-440 2-169 (301)
112 1rj9_A FTSY, signal recognitio 99.7 8E-19 2.7E-23 174.3 4.9 150 269-441 101-261 (304)
113 2qag_C Septin-7; cell cycle, c 99.7 3.4E-19 1.2E-23 184.0 0.6 165 242-441 11-180 (418)
114 3thx_B DNA mismatch repair pro 99.7 4E-18 1.4E-22 190.8 6.1 158 242-447 640-805 (918)
115 3kta_B Chromosome segregation 99.7 3E-17 1E-21 149.4 10.8 79 377-455 62-146 (173)
116 1s96_A Guanylate kinase, GMP k 99.7 2.1E-18 7.1E-23 163.4 2.9 144 265-467 11-161 (219)
117 2w0m_A SSO2452; RECA, SSPF, un 99.7 2.4E-18 8.1E-23 163.1 3.1 164 258-453 10-192 (235)
118 2qag_B Septin-6, protein NEDD5 99.7 4.9E-18 1.7E-22 174.8 3.1 178 242-437 16-218 (427)
119 2gza_A Type IV secretion syste 99.7 7.5E-20 2.6E-24 186.3 -10.3 148 244-393 137-301 (361)
120 1wb9_A DNA mismatch repair pro 99.7 1.7E-17 5.7E-22 184.1 2.2 150 257-457 595-749 (800)
121 1odf_A YGR205W, hypothetical 3 99.6 2.8E-19 9.6E-24 176.5 -12.0 128 269-414 30-169 (290)
122 1nij_A Hypothetical protein YJ 99.6 2.7E-18 9.2E-23 171.9 -5.3 148 271-441 5-192 (318)
123 1zp6_A Hypothetical protein AT 99.6 9.6E-18 3.3E-22 154.6 -1.9 151 266-437 5-159 (191)
124 2cvh_A DNA repair and recombin 99.6 2.6E-15 9E-20 141.1 14.1 148 259-453 8-185 (220)
125 1nlf_A Regulatory protein REPA 99.6 2.1E-16 7.3E-21 155.0 6.0 151 266-441 26-184 (279)
126 3c8u_A Fructokinase; YP_612366 99.6 1.8E-19 6.1E-24 169.3 -16.0 113 267-407 19-140 (208)
127 1n0w_A DNA repair protein RAD5 99.6 2.2E-15 7.4E-20 143.8 7.3 146 266-453 20-209 (243)
128 3auy_A DNA double-strand break 99.5 3.2E-14 1.1E-18 145.3 10.6 74 378-451 279-359 (371)
129 2bdt_A BH3686; alpha-beta prot 99.5 1E-17 3.5E-22 154.5 -14.3 166 270-465 2-183 (189)
130 1sxj_E Activator 1 40 kDa subu 99.5 1E-14 3.5E-19 147.4 6.3 139 271-441 37-177 (354)
131 2qm8_A GTPase/ATPase; G protei 99.5 1.1E-15 3.6E-20 154.2 -1.1 171 246-425 33-258 (337)
132 2yhs_A FTSY, cell division pro 99.5 9E-16 3.1E-20 159.9 -2.8 155 260-437 283-448 (503)
133 2bbw_A Adenylate kinase 4, AK4 99.5 4.7E-16 1.6E-20 149.7 -4.9 147 269-426 26-197 (246)
134 1htw_A HI0065; nucleotide-bind 99.5 2E-15 6.8E-20 135.5 -2.2 86 246-339 11-96 (158)
135 2rcn_A Probable GTPase ENGC; Y 99.5 1.4E-14 4.9E-19 146.1 3.5 118 259-395 205-329 (358)
136 3e70_C DPA, signal recognition 99.5 1.3E-15 4.4E-20 152.6 -4.3 166 266-456 125-307 (328)
137 3lda_A DNA repair protein RAD5 99.5 6.9E-14 2.4E-18 143.6 7.8 145 266-454 174-364 (400)
138 1p9r_A General secretion pathw 99.4 1.4E-16 4.7E-21 164.6 -12.5 127 259-402 158-314 (418)
139 2oap_1 GSPE-2, type II secreti 99.4 1.9E-16 6.6E-21 167.7 -13.5 172 258-445 248-458 (511)
140 2kjq_A DNAA-related protein; s 99.4 2.7E-13 9.3E-18 120.3 6.2 91 259-437 30-124 (149)
141 2yv5_A YJEQ protein; hydrolase 99.4 7.5E-14 2.5E-18 138.5 2.6 113 266-392 161-300 (302)
142 3ec2_A DNA replication protein 99.4 2.3E-13 7.8E-18 124.2 5.3 111 264-439 32-144 (180)
143 2x8a_A Nuclear valosin-contain 99.4 2.6E-15 8.8E-20 147.1 -8.7 143 258-423 34-191 (274)
144 1u0l_A Probable GTPase ENGC; p 99.3 5.9E-13 2E-17 132.0 4.4 104 265-369 164-292 (301)
145 3lnc_A Guanylate kinase, GMP k 99.3 3E-15 1E-19 142.6 -12.6 183 259-460 16-218 (231)
146 1udx_A The GTP-binding protein 99.3 9.9E-13 3.4E-17 135.6 4.6 152 260-436 147-306 (416)
147 1sq5_A Pantothenate kinase; P- 99.3 1.9E-14 6.5E-19 143.3 -8.5 139 241-412 36-199 (308)
148 3tr0_A Guanylate kinase, GMP k 99.2 6.7E-12 2.3E-16 116.5 6.4 72 264-339 1-73 (205)
149 1vma_A Cell division protein F 99.2 1E-11 3.4E-16 123.2 4.8 98 263-408 97-197 (306)
150 1cke_A CK, MSSA, protein (cyti 99.2 4.8E-13 1.6E-17 126.4 -5.3 128 269-407 4-150 (227)
151 1t9h_A YLOQ, probable GTPase E 99.2 5.4E-12 1.8E-16 124.9 1.5 96 265-362 168-289 (307)
152 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 9.5E-14 3.2E-18 142.0 -11.5 169 266-461 16-208 (392)
153 1ls1_A Signal recognition part 99.1 4.5E-11 1.5E-15 118.1 7.8 142 243-435 77-219 (295)
154 2px0_A Flagellar biosynthesis 99.1 2.9E-11 9.8E-16 119.5 5.9 138 268-457 103-246 (296)
155 3euj_A Chromosome partition pr 99.1 1.7E-11 5.8E-16 128.1 4.4 54 258-312 18-71 (483)
156 4e22_A Cytidylate kinase; P-lo 99.1 2E-11 6.8E-16 117.8 1.2 102 268-375 25-144 (252)
157 1oix_A RAS-related protein RAB 99.1 8.2E-12 2.8E-16 114.9 -2.3 139 272-424 31-188 (191)
158 2ius_A DNA translocase FTSK; n 99.0 1E-11 3.4E-16 130.8 -2.4 161 262-439 159-343 (512)
159 1in4_A RUVB, holliday junction 99.0 2.9E-13 1E-17 136.2 -15.5 90 246-338 22-122 (334)
160 2dr3_A UPF0273 protein PH0284; 99.0 2.8E-10 9.5E-15 108.3 6.0 166 259-452 11-196 (247)
161 1iy2_A ATP-dependent metallopr 99.0 1E-12 3.5E-17 128.6 -11.9 136 244-407 51-195 (278)
162 3a00_A Guanylate kinase, GMP k 99.0 9.2E-11 3.2E-15 107.6 1.7 128 270-405 1-169 (186)
163 2zr9_A Protein RECA, recombina 99.0 1.2E-09 4.1E-14 110.3 9.4 143 266-460 57-237 (349)
164 1qhl_A Protein (cell division 99.0 1.5E-11 5.2E-16 116.5 -4.3 75 242-326 9-91 (227)
165 3k1j_A LON protease, ATP-depen 99.0 6.2E-11 2.1E-15 128.5 -0.5 155 258-424 48-227 (604)
166 1ixz_A ATP-dependent metallopr 98.9 1.8E-12 6.3E-17 124.8 -12.2 138 243-408 26-172 (254)
167 2dy1_A Elongation factor G; tr 98.9 1.5E-09 5.3E-14 118.6 7.2 75 264-339 3-79 (665)
168 3ney_A 55 kDa erythrocyte memb 98.8 6.2E-10 2.1E-14 103.0 2.0 84 264-355 13-109 (197)
169 2r6a_A DNAB helicase, replicat 98.8 2.9E-09 1E-13 111.4 6.4 176 259-455 192-401 (454)
170 1svm_A Large T antigen; AAA+ f 98.8 4.9E-11 1.7E-15 121.4 -7.9 136 258-408 157-312 (377)
171 2f9l_A RAB11B, member RAS onco 98.8 2.2E-09 7.5E-14 99.0 2.8 35 388-424 130-164 (199)
172 3kta_A Chromosome segregation 98.7 1.9E-09 6.4E-14 98.1 1.6 99 261-360 18-137 (182)
173 1kgd_A CASK, peripheral plasma 98.7 1.7E-09 5.9E-14 98.5 0.2 80 269-354 4-94 (180)
174 2ce7_A Cell division protein F 98.6 4.7E-08 1.6E-12 102.4 8.1 113 259-441 40-167 (476)
175 3nwj_A ATSK2; P loop, shikimat 98.6 3.7E-09 1.3E-13 101.6 -0.6 52 242-294 17-72 (250)
176 2qt1_A Nicotinamide riboside k 98.6 7.1E-09 2.4E-13 96.4 1.3 50 265-340 16-65 (207)
177 2j41_A Guanylate kinase; GMP, 98.6 1.8E-08 6.1E-13 93.1 3.4 63 265-330 1-63 (207)
178 4eun_A Thermoresistant glucoki 98.6 6.5E-09 2.2E-13 96.3 -0.7 61 264-330 23-84 (200)
179 2qtf_A Protein HFLX, GTP-bindi 98.5 3.3E-08 1.1E-12 100.2 3.7 137 272-425 181-351 (364)
180 2dhr_A FTSH; AAA+ protein, hex 98.5 4E-09 1.4E-13 111.1 -3.6 126 258-409 54-188 (499)
181 3uie_A Adenylyl-sulfate kinase 98.5 3.3E-09 1.1E-13 98.3 -4.3 50 258-308 13-64 (200)
182 3cr8_A Sulfate adenylyltranfer 98.5 8.6E-09 2.9E-13 109.9 -2.7 87 266-357 365-468 (552)
183 3hr8_A Protein RECA; alpha and 98.5 8.2E-07 2.8E-11 89.4 11.6 61 266-329 57-118 (356)
184 1zu4_A FTSY; GTPase, signal re 98.4 3E-08 1E-12 98.8 0.6 68 260-327 95-172 (320)
185 3t34_A Dynamin-related protein 98.4 4.3E-07 1.5E-11 91.9 8.2 46 259-307 26-73 (360)
186 1jjv_A Dephospho-COA kinase; P 98.4 1.2E-07 4E-12 87.9 3.6 126 272-452 4-132 (206)
187 2e87_A Hypothetical protein PH 98.4 7.8E-07 2.7E-11 89.9 8.9 61 378-439 230-293 (357)
188 3tau_A Guanylate kinase, GMP k 98.3 9E-08 3.1E-12 89.2 1.4 29 268-296 6-34 (208)
189 3vaa_A Shikimate kinase, SK; s 98.3 2.3E-07 7.9E-12 85.6 3.4 38 257-294 12-49 (199)
190 2vp4_A Deoxynucleoside kinase; 98.3 3E-08 1E-12 94.0 -2.8 65 263-331 13-87 (230)
191 2xau_A PRE-mRNA-splicing facto 98.3 3.2E-07 1.1E-11 101.9 4.7 64 380-443 191-257 (773)
192 4a1f_A DNAB helicase, replicat 98.2 3.1E-06 1E-10 84.6 8.1 105 259-411 35-141 (338)
193 2z43_A DNA repair and recombin 98.2 1.3E-06 4.4E-11 87.1 5.2 28 266-293 103-130 (324)
194 3ice_A Transcription terminati 98.1 3.3E-07 1.1E-11 92.4 0.4 53 241-294 132-198 (422)
195 3kl4_A SRP54, signal recogniti 98.1 5.2E-06 1.8E-10 85.7 9.3 40 269-308 96-135 (433)
196 1rz3_A Hypothetical protein rb 98.1 5.4E-07 1.8E-11 83.3 1.0 46 266-311 18-63 (201)
197 2ffh_A Protein (FFH); SRP54, s 98.1 2.5E-06 8.7E-11 87.8 5.8 148 261-436 91-246 (425)
198 3tqc_A Pantothenate kinase; bi 98.0 9.1E-07 3.1E-11 87.9 -0.1 44 259-302 75-126 (321)
199 1knq_A Gluconate kinase; ALFA/ 98.0 1.6E-06 5.4E-11 77.9 1.5 38 268-309 6-43 (175)
200 2z4s_A Chromosomal replication 97.9 2.1E-06 7.1E-11 89.3 2.1 67 396-462 193-264 (440)
201 1fnn_A CDC6P, cell division co 97.9 1.5E-05 5.1E-10 80.5 8.2 45 396-441 124-172 (389)
202 3b9p_A CG5977-PA, isoform A; A 97.9 2.3E-05 8E-10 76.4 8.7 71 381-451 97-187 (297)
203 1v5w_A DMC1, meiotic recombina 97.9 5.5E-06 1.9E-10 83.2 4.1 28 266-293 118-145 (343)
204 1sxj_C Activator 1 40 kDa subu 97.9 2.4E-06 8.2E-11 85.5 0.8 42 258-299 32-75 (340)
205 3lxx_A GTPase IMAP family memb 97.9 8.3E-05 2.8E-09 70.2 11.3 28 272-299 31-58 (239)
206 1ega_A Protein (GTP-binding pr 97.8 5.6E-06 1.9E-10 81.6 2.5 148 270-447 8-169 (301)
207 3m6a_A ATP-dependent protease 97.8 2.8E-06 9.7E-11 90.6 0.4 69 258-327 97-165 (543)
208 1ypw_A Transitional endoplasmi 97.8 4.4E-06 1.5E-10 93.3 0.7 32 265-296 233-264 (806)
209 1mky_A Probable GTP-binding pr 97.7 1.4E-05 4.9E-10 82.9 4.2 61 271-331 181-253 (439)
210 1kag_A SKI, shikimate kinase I 97.7 1.1E-05 3.7E-10 72.1 2.8 33 269-305 3-35 (173)
211 2pez_A Bifunctional 3'-phospho 97.7 5E-06 1.7E-10 75.0 0.1 40 268-308 3-44 (179)
212 3r20_A Cytidylate kinase; stru 97.7 1E-05 3.5E-10 76.5 2.1 70 269-338 8-95 (233)
213 1f6b_A SAR1; gtpases, N-termin 97.7 1E-05 3.5E-10 74.2 2.0 42 249-292 6-47 (198)
214 3bh0_A DNAB-like replicative h 97.7 6.3E-05 2.1E-09 74.5 7.8 34 259-292 57-90 (315)
215 4eaq_A DTMP kinase, thymidylat 97.7 1E-05 3.4E-10 76.5 1.7 44 260-304 13-59 (229)
216 2qby_A CDC6 homolog 1, cell di 97.7 1.5E-05 5.1E-10 80.2 2.8 30 268-297 43-72 (386)
217 2p67_A LAO/AO transport system 97.7 5.2E-06 1.8E-10 83.3 -0.7 51 258-308 44-94 (341)
218 3llm_A ATP-dependent RNA helic 97.6 3.5E-05 1.2E-09 72.8 4.7 127 267-428 73-208 (235)
219 1u94_A RECA protein, recombina 97.6 0.00033 1.1E-08 70.5 11.5 28 267-294 60-87 (356)
220 1m7g_A Adenylylsulfate kinase; 97.6 1E-05 3.5E-10 75.2 -0.0 42 265-306 20-63 (211)
221 2eyu_A Twitching motility prot 97.6 5.3E-08 1.8E-12 94.2 -16.2 74 364-439 157-241 (261)
222 2qor_A Guanylate kinase; phosp 97.6 1.2E-05 4E-10 74.3 0.3 30 266-295 8-37 (204)
223 1lv7_A FTSH; alpha/beta domain 97.5 0.00031 1.1E-08 66.9 10.1 34 260-295 37-70 (257)
224 1l8q_A Chromosomal replication 97.5 6.7E-05 2.3E-09 74.3 5.6 28 269-296 36-63 (324)
225 4fcw_A Chaperone protein CLPB; 97.5 8.9E-05 3E-09 72.6 6.2 32 270-301 47-78 (311)
226 2www_A Methylmalonic aciduria 97.5 1.8E-05 6.1E-10 79.7 1.1 41 269-309 73-113 (349)
227 3cf0_A Transitional endoplasmi 97.5 0.00022 7.5E-09 69.9 8.9 30 265-294 44-73 (301)
228 2gj8_A MNME, tRNA modification 97.5 7.2E-05 2.5E-09 66.8 4.3 27 268-294 2-28 (172)
229 1m2o_B GTP-binding protein SAR 97.5 7E-05 2.4E-09 68.0 4.2 33 259-292 13-45 (190)
230 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 6.7E-05 2.3E-09 65.8 3.8 31 261-292 15-45 (149)
231 2w58_A DNAI, primosome compone 97.5 4.3E-05 1.5E-09 70.1 2.6 26 271-296 55-80 (202)
232 1sxj_D Activator 1 41 kDa subu 97.4 2.8E-05 9.5E-10 77.5 0.9 43 397-440 133-175 (353)
233 1y63_A LMAJ004144AAA protein; 97.4 7.1E-05 2.4E-09 67.8 3.3 32 262-293 2-33 (184)
234 3h4m_A Proteasome-activating n 97.4 0.00038 1.3E-08 67.2 8.6 28 267-294 48-75 (285)
235 4dcu_A GTP-binding protein ENG 97.4 0.00026 8.7E-09 73.8 7.6 58 382-442 87-145 (456)
236 3bos_A Putative DNA replicatio 97.4 6.1E-05 2.1E-09 70.4 2.4 27 269-295 51-77 (242)
237 1njg_A DNA polymerase III subu 97.4 0.00013 4.4E-09 67.7 4.6 45 396-441 125-169 (250)
238 3n70_A Transport activator; si 97.3 0.00079 2.7E-08 58.3 9.0 29 268-296 22-50 (145)
239 3lxw_A GTPase IMAP family memb 97.3 0.00094 3.2E-08 63.5 9.8 24 271-294 22-45 (247)
240 1j8m_F SRP54, signal recogniti 97.3 3.2E-05 1.1E-09 75.9 -0.7 47 263-310 92-138 (297)
241 2yvu_A Probable adenylyl-sulfa 97.2 6.8E-05 2.3E-09 67.9 1.3 40 266-305 9-49 (186)
242 2wji_A Ferrous iron transport 97.2 0.00038 1.3E-08 61.4 5.2 25 271-295 4-28 (165)
243 3t61_A Gluconokinase; PSI-biol 97.1 0.0001 3.4E-09 67.7 1.1 33 270-306 18-50 (202)
244 2ohf_A Protein OLA1, GTP-bindi 97.1 0.00022 7.4E-09 72.6 3.6 41 266-306 18-69 (396)
245 2wjg_A FEOB, ferrous iron tran 97.1 0.00028 9.7E-09 63.2 3.7 23 271-293 8-30 (188)
246 2zej_A Dardarin, leucine-rich 97.0 0.00035 1.2E-08 62.8 3.6 25 272-296 4-28 (184)
247 3qks_A DNA double-strand break 97.0 0.00037 1.3E-08 64.3 3.8 29 262-291 16-44 (203)
248 2i1q_A DNA repair and recombin 97.0 0.00063 2.2E-08 67.2 5.7 27 266-292 94-120 (322)
249 2p5t_B PEZT; postsegregational 97.0 0.00017 5.7E-09 69.0 1.4 41 266-308 28-68 (253)
250 2if2_A Dephospho-COA kinase; a 97.0 0.00032 1.1E-08 64.2 3.3 21 272-292 3-23 (204)
251 2qag_A Septin-2, protein NEDD5 97.0 6.1E-05 2.1E-09 76.1 -1.9 56 241-304 16-71 (361)
252 1np6_A Molybdopterin-guanine d 97.0 0.00024 8.2E-09 64.0 2.0 38 270-307 6-46 (174)
253 4ag6_A VIRB4 ATPase, type IV s 96.9 0.00038 1.3E-08 70.9 3.1 58 396-453 261-335 (392)
254 1qhx_A CPT, protein (chloramph 96.9 0.00056 1.9E-08 61.0 3.7 27 269-295 2-28 (178)
255 1lw7_A Transcriptional regulat 96.8 1.5E-05 5.1E-10 80.7 -7.8 85 380-466 259-355 (365)
256 3cm0_A Adenylate kinase; ATP-b 96.8 0.00046 1.6E-08 62.1 2.9 26 268-293 2-27 (186)
257 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00021 7.3E-09 71.4 0.3 36 259-294 11-48 (359)
258 2chg_A Replication factor C sm 96.8 0.0022 7.6E-08 58.4 7.1 44 396-440 101-144 (226)
259 3ihw_A Centg3; RAS, centaurin, 96.8 0.0012 4.3E-08 59.3 5.1 35 272-306 22-65 (184)
260 2q6t_A DNAB replication FORK h 96.8 0.0039 1.3E-07 64.5 9.4 156 259-434 189-357 (444)
261 1xp8_A RECA protein, recombina 96.7 0.0046 1.6E-07 62.3 9.7 27 266-292 70-96 (366)
262 3syl_A Protein CBBX; photosynt 96.7 0.011 3.9E-07 57.3 12.3 25 270-294 67-91 (309)
263 2ewv_A Twitching motility prot 96.7 0.00055 1.9E-08 69.3 2.8 56 387-448 199-254 (372)
264 3d8b_A Fidgetin-like protein 1 96.7 0.0032 1.1E-07 63.2 8.4 27 268-294 115-141 (357)
265 1uf9_A TT1252 protein; P-loop, 96.7 0.00066 2.2E-08 61.8 3.0 31 270-305 8-38 (203)
266 3kb2_A SPBC2 prophage-derived 96.7 0.00077 2.6E-08 59.5 3.3 24 271-294 2-25 (173)
267 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0065 2.2E-07 57.4 10.0 26 269-294 38-63 (262)
268 2jaq_A Deoxyguanosine kinase; 96.7 0.00066 2.3E-08 61.7 2.9 23 272-294 2-24 (205)
269 3dm5_A SRP54, signal recogniti 96.7 0.0073 2.5E-07 62.2 10.7 35 269-303 99-133 (443)
270 1kht_A Adenylate kinase; phosp 96.7 0.00091 3.1E-08 60.1 3.6 26 269-294 2-27 (192)
271 3uk6_A RUVB-like 2; hexameric 96.6 0.0034 1.2E-07 62.7 7.9 38 268-305 68-105 (368)
272 2v1u_A Cell division control p 96.6 0.00079 2.7E-08 67.5 3.1 28 268-295 42-69 (387)
273 3trf_A Shikimate kinase, SK; a 96.6 0.001 3.6E-08 59.7 3.5 26 269-294 4-29 (185)
274 2b8t_A Thymidine kinase; deoxy 96.6 0.0025 8.7E-08 59.6 6.1 50 397-450 89-149 (223)
275 1q3t_A Cytidylate kinase; nucl 96.6 0.001 3.4E-08 62.6 3.3 27 267-293 13-39 (236)
276 1gvn_B Zeta; postsegregational 96.6 0.001 3.5E-08 64.8 3.3 35 269-305 32-66 (287)
277 1gtv_A TMK, thymidylate kinase 96.6 0.00026 8.9E-09 65.2 -1.0 26 272-297 2-27 (214)
278 2rhm_A Putative kinase; P-loop 96.6 0.00099 3.4E-08 60.0 2.9 27 268-294 3-29 (193)
279 1ex7_A Guanylate kinase; subst 96.6 0.00087 3E-08 61.0 2.5 22 273-294 4-25 (186)
280 3iij_A Coilin-interacting nucl 96.6 0.00081 2.8E-08 60.2 2.2 27 268-294 9-35 (180)
281 1fzq_A ADP-ribosylation factor 96.5 0.0011 3.8E-08 59.3 3.2 24 270-293 16-39 (181)
282 2v54_A DTMP kinase, thymidylat 96.5 0.0013 4.4E-08 59.9 3.6 26 269-294 3-28 (204)
283 3lw7_A Adenylate kinase relate 96.5 0.0012 4E-08 58.2 3.3 19 272-290 3-21 (179)
284 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0031 1.1E-07 62.1 6.3 28 265-292 118-145 (331)
285 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.011 3.8E-07 58.3 10.3 27 268-294 43-69 (322)
286 3auy_A DNA double-strand break 96.5 0.0025 8.5E-08 64.3 5.5 31 260-291 16-46 (371)
287 3cmw_A Protein RECA, recombina 96.4 0.012 4.2E-07 69.7 11.9 35 267-301 729-763 (1706)
288 1vht_A Dephospho-COA kinase; s 96.4 0.0014 4.8E-08 60.6 3.2 24 269-292 3-26 (218)
289 1jal_A YCHF protein; nucleotid 96.4 0.0024 8.2E-08 64.2 4.8 36 270-305 2-48 (363)
290 2c95_A Adenylate kinase 1; tra 96.4 0.0016 5.5E-08 58.8 3.1 27 268-294 7-33 (196)
291 3zvl_A Bifunctional polynucleo 96.4 0.013 4.3E-07 60.1 10.2 29 266-294 254-282 (416)
292 1nn5_A Similar to deoxythymidy 96.3 0.0018 6.2E-08 59.4 3.3 28 267-294 6-33 (215)
293 2wwf_A Thymidilate kinase, put 96.3 0.0018 6.3E-08 59.3 3.3 27 268-294 8-34 (212)
294 3bgw_A DNAB-like replicative h 96.3 0.0055 1.9E-07 63.4 7.2 33 260-292 187-219 (444)
295 1ko7_A HPR kinase/phosphatase; 96.3 0.0014 4.8E-08 64.4 2.6 33 259-292 134-166 (314)
296 3co5_A Putative two-component 96.3 0.0079 2.7E-07 51.8 7.1 27 268-294 25-51 (143)
297 2plr_A DTMP kinase, probable t 96.3 0.002 6.7E-08 58.9 3.4 28 269-296 3-30 (213)
298 1via_A Shikimate kinase; struc 96.3 0.0017 5.9E-08 57.8 2.9 23 272-294 6-28 (175)
299 1ly1_A Polynucleotide kinase; 96.3 0.002 7E-08 57.1 3.3 22 271-292 3-24 (181)
300 2ze6_A Isopentenyl transferase 96.3 0.0017 5.7E-08 62.0 2.8 24 271-294 2-25 (253)
301 2bwj_A Adenylate kinase 5; pho 96.3 0.00087 3E-08 60.7 0.6 29 266-294 8-36 (199)
302 1tev_A UMP-CMP kinase; ploop, 96.2 0.0025 8.6E-08 57.3 3.3 25 270-294 3-27 (196)
303 1jr3_A DNA polymerase III subu 96.1 0.011 3.6E-07 59.0 8.0 43 397-440 119-161 (373)
304 2vli_A Antibiotic resistance p 96.1 0.002 6.8E-08 57.6 2.3 27 268-294 3-29 (183)
305 1nks_A Adenylate kinase; therm 96.1 0.0025 8.7E-08 57.1 3.0 24 272-295 3-26 (194)
306 2lkc_A Translation initiation 96.1 0.0078 2.7E-07 52.9 6.0 25 269-293 7-31 (178)
307 2erx_A GTP-binding protein DI- 96.1 0.0057 2E-07 53.2 5.0 21 272-292 5-25 (172)
308 3cbq_A GTP-binding protein REM 96.0 0.0032 1.1E-07 57.2 3.3 22 272-293 25-46 (195)
309 1aky_A Adenylate kinase; ATP:A 96.0 0.0036 1.2E-07 57.9 3.7 27 268-294 2-28 (220)
310 1xjc_A MOBB protein homolog; s 96.0 0.002 7E-08 57.6 1.6 26 271-296 5-30 (169)
311 4b4t_L 26S protease subunit RP 96.0 0.015 5.2E-07 59.8 8.3 29 266-294 211-239 (437)
312 2z0h_A DTMP kinase, thymidylat 96.0 0.0035 1.2E-07 56.5 3.2 23 272-294 2-24 (197)
313 2cdn_A Adenylate kinase; phosp 96.0 0.0042 1.4E-07 56.6 3.7 26 269-294 19-44 (201)
314 1zd8_A GTP:AMP phosphotransfer 95.9 0.0036 1.2E-07 58.3 3.3 27 268-294 5-31 (227)
315 3fb4_A Adenylate kinase; psych 95.9 0.0036 1.2E-07 57.6 3.2 23 272-294 2-24 (216)
316 3q72_A GTP-binding protein RAD 95.9 0.0035 1.2E-07 54.5 3.0 23 272-294 4-26 (166)
317 1z2a_A RAS-related protein RAB 95.9 0.0036 1.2E-07 54.4 3.0 22 272-293 7-28 (168)
318 3ake_A Cytidylate kinase; CMP 95.9 0.0036 1.2E-07 57.0 3.0 23 272-294 4-26 (208)
319 1zuh_A Shikimate kinase; alpha 95.9 0.0043 1.5E-07 54.7 3.4 24 270-293 7-30 (168)
320 3k53_A Ferrous iron transport 95.9 0.0035 1.2E-07 60.2 3.0 23 272-294 5-27 (271)
321 1e6c_A Shikimate kinase; phosp 95.9 0.004 1.4E-07 55.0 3.1 24 271-294 3-26 (173)
322 1qf9_A UMP/CMP kinase, protein 95.9 0.0033 1.1E-07 56.4 2.6 25 270-294 6-30 (194)
323 2iyv_A Shikimate kinase, SK; t 95.9 0.0037 1.3E-07 56.0 2.9 24 271-294 3-26 (184)
324 2nzj_A GTP-binding protein REM 95.9 0.0045 1.5E-07 54.2 3.4 23 272-294 6-28 (175)
325 2ged_A SR-beta, signal recogni 95.9 0.0039 1.3E-07 55.9 3.0 25 270-294 48-72 (193)
326 1zak_A Adenylate kinase; ATP:A 95.8 0.0037 1.3E-07 58.0 2.8 26 269-294 4-29 (222)
327 3pfi_A Holliday junction ATP-d 95.8 0.035 1.2E-06 54.6 10.2 24 271-294 56-79 (338)
328 1z0j_A RAB-22, RAS-related pro 95.8 0.006 2.1E-07 53.0 4.1 23 272-294 8-30 (170)
329 3q85_A GTP-binding protein REM 95.8 0.0046 1.6E-07 53.9 3.3 23 272-294 4-26 (169)
330 3dl0_A Adenylate kinase; phosp 95.8 0.0043 1.5E-07 57.2 3.2 23 272-294 2-24 (216)
331 3pxi_A Negative regulator of g 95.8 0.015 5E-07 64.4 8.1 23 272-294 523-545 (758)
332 1ukz_A Uridylate kinase; trans 95.8 0.0042 1.4E-07 56.5 3.1 26 269-294 14-39 (203)
333 2pt5_A Shikimate kinase, SK; a 95.8 0.0046 1.6E-07 54.3 3.3 23 272-294 2-24 (168)
334 1kao_A RAP2A; GTP-binding prot 95.8 0.0043 1.5E-07 53.6 3.0 22 272-293 5-26 (167)
335 2dyk_A GTP-binding protein; GT 95.8 0.0044 1.5E-07 53.5 3.0 23 272-294 3-25 (161)
336 4b4t_K 26S protease regulatory 95.8 0.021 7.2E-07 58.6 8.4 29 266-294 202-230 (428)
337 2pbr_A DTMP kinase, thymidylat 95.8 0.0047 1.6E-07 55.4 3.2 23 272-294 2-24 (195)
338 3tw8_B RAS-related protein RAB 95.8 0.005 1.7E-07 54.2 3.3 22 272-293 11-32 (181)
339 2ce2_X GTPase HRAS; signaling 95.8 0.0041 1.4E-07 53.6 2.7 22 272-293 5-26 (166)
340 1u8z_A RAS-related protein RAL 95.8 0.0047 1.6E-07 53.5 3.0 22 272-293 6-27 (168)
341 3cmu_A Protein RECA, recombina 95.7 0.035 1.2E-06 66.8 11.2 28 267-294 380-407 (2050)
342 3a8t_A Adenylate isopentenyltr 95.7 0.0056 1.9E-07 60.7 3.8 27 269-295 39-65 (339)
343 3u61_B DNA polymerase accessor 95.7 0.012 4.1E-07 57.7 6.2 44 397-441 105-149 (324)
344 1z08_A RAS-related protein RAB 95.7 0.0049 1.7E-07 53.7 3.0 22 272-293 8-29 (170)
345 2grj_A Dephospho-COA kinase; T 95.7 0.0052 1.8E-07 56.1 3.2 23 271-293 13-35 (192)
346 1ek0_A Protein (GTP-binding pr 95.7 0.005 1.7E-07 53.5 3.0 22 272-293 5-26 (170)
347 1ky3_A GTP-binding protein YPT 95.7 0.005 1.7E-07 54.2 3.0 22 272-293 10-31 (182)
348 4b4t_M 26S protease regulatory 95.7 0.02 6.9E-07 58.8 7.9 29 266-294 211-239 (434)
349 1g16_A RAS-related protein SEC 95.7 0.0045 1.6E-07 53.8 2.7 22 272-293 5-26 (170)
350 2oil_A CATX-8, RAS-related pro 95.7 0.0068 2.3E-07 54.4 3.9 22 272-293 27-48 (193)
351 2ew1_A RAS-related protein RAB 95.7 0.0098 3.3E-07 54.3 5.0 22 272-293 28-49 (201)
352 1wms_A RAB-9, RAB9, RAS-relate 95.7 0.0052 1.8E-07 54.0 3.0 22 272-293 9-30 (177)
353 1svi_A GTP-binding protein YSX 95.7 0.005 1.7E-07 55.2 2.8 24 270-293 23-46 (195)
354 3tlx_A Adenylate kinase 2; str 95.6 0.0057 2E-07 57.8 3.3 26 269-294 28-53 (243)
355 3t5d_A Septin-7; GTP-binding p 95.6 0.0052 1.8E-07 59.1 3.0 22 272-293 10-31 (274)
356 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.0059 2E-07 58.3 3.4 25 269-293 3-27 (260)
357 1c1y_A RAS-related protein RAP 95.6 0.0076 2.6E-07 52.2 3.8 22 272-293 5-26 (167)
358 3pqc_A Probable GTP-binding pr 95.6 0.0052 1.8E-07 54.9 2.8 24 271-294 24-47 (195)
359 1uj2_A Uridine-cytidine kinase 95.6 0.0057 2E-07 58.0 3.2 24 271-294 23-46 (252)
360 1a7j_A Phosphoribulokinase; tr 95.6 0.0029 9.8E-08 61.7 1.1 26 269-294 4-29 (290)
361 2fn4_A P23, RAS-related protei 95.6 0.0052 1.8E-07 54.1 2.7 22 272-293 11-32 (181)
362 3b1v_A Ferrous iron uptake tra 95.6 0.0061 2.1E-07 58.8 3.4 23 272-294 5-27 (272)
363 3t1o_A Gliding protein MGLA; G 95.6 0.006 2E-07 54.5 3.1 25 272-296 16-40 (198)
364 1r2q_A RAS-related protein RAB 95.6 0.006 2E-07 53.0 3.0 21 272-292 8-28 (170)
365 3clv_A RAB5 protein, putative; 95.5 0.0062 2.1E-07 54.6 3.0 22 272-293 9-30 (208)
366 2cxx_A Probable GTP-binding pr 95.5 0.0059 2E-07 54.3 2.8 23 272-294 3-25 (190)
367 2zan_A Vacuolar protein sortin 95.5 0.041 1.4E-06 56.8 9.6 27 268-294 165-191 (444)
368 4dsu_A GTPase KRAS, isoform 2B 95.5 0.0064 2.2E-07 54.0 3.0 22 272-293 6-27 (189)
369 2hxs_A RAB-26, RAS-related pro 95.5 0.0072 2.5E-07 53.1 3.3 22 272-293 8-29 (178)
370 1m7b_A RND3/RHOE small GTP-bin 95.5 0.0081 2.8E-07 53.5 3.7 22 272-293 9-30 (184)
371 1r8s_A ADP-ribosylation factor 95.5 0.0067 2.3E-07 52.6 3.0 21 272-292 2-22 (164)
372 3bc1_A RAS-related protein RAB 95.5 0.0065 2.2E-07 54.0 3.0 22 272-293 13-34 (195)
373 1upt_A ARL1, ADP-ribosylation 95.5 0.0068 2.3E-07 52.8 3.0 23 270-292 7-29 (171)
374 1moz_A ARL1, ADP-ribosylation 95.4 0.0054 1.8E-07 54.3 2.2 24 269-292 17-40 (183)
375 2f6r_A COA synthase, bifunctio 95.4 0.0068 2.3E-07 58.7 3.0 23 270-292 75-97 (281)
376 2y8e_A RAB-protein 6, GH09086P 95.4 0.0066 2.2E-07 53.3 2.7 22 272-293 16-37 (179)
377 2g6b_A RAS-related protein RAB 95.4 0.0074 2.5E-07 53.1 3.0 22 272-293 12-33 (180)
378 1z0f_A RAB14, member RAS oncog 95.4 0.0076 2.6E-07 52.8 3.0 22 272-293 17-38 (179)
379 3con_A GTPase NRAS; structural 95.4 0.0076 2.6E-07 53.8 3.0 22 272-293 23-44 (190)
380 3t5g_A GTP-binding protein RHE 95.4 0.014 4.6E-07 51.6 4.6 21 272-292 8-28 (181)
381 4b4t_J 26S protease regulatory 95.4 0.036 1.2E-06 56.2 8.2 28 267-294 179-206 (405)
382 2efe_B Small GTP-binding prote 95.3 0.0079 2.7E-07 53.0 3.0 22 272-293 14-35 (181)
383 3be4_A Adenylate kinase; malar 95.3 0.0079 2.7E-07 55.6 3.1 26 269-294 4-29 (217)
384 2a9k_A RAS-related protein RAL 95.3 0.0079 2.7E-07 53.2 3.0 22 272-293 20-41 (187)
385 3exa_A TRNA delta(2)-isopenten 95.3 0.009 3.1E-07 58.6 3.5 26 270-295 3-28 (322)
386 2qmh_A HPR kinase/phosphorylas 95.3 0.011 3.9E-07 54.0 3.9 35 259-294 24-58 (205)
387 1ksh_A ARF-like protein 2; sma 95.3 0.0096 3.3E-07 52.9 3.3 25 269-293 17-41 (186)
388 1wf3_A GTP-binding protein; GT 95.3 0.0088 3E-07 58.5 3.3 22 272-293 9-30 (301)
389 1qvr_A CLPB protein; coiled co 95.3 0.02 7E-07 64.1 6.7 26 271-296 589-614 (854)
390 3iby_A Ferrous iron transport 95.3 0.0083 2.8E-07 57.2 3.0 23 272-294 3-25 (256)
391 1jbk_A CLPB protein; beta barr 95.3 0.011 3.6E-07 52.4 3.6 27 268-294 41-67 (195)
392 2xb4_A Adenylate kinase; ATP-b 95.2 0.0094 3.2E-07 55.4 3.3 23 272-294 2-24 (223)
393 1ypw_A Transitional endoplasmi 95.2 0.00092 3.2E-08 74.5 -4.3 45 263-309 504-548 (806)
394 4b4t_I 26S protease regulatory 95.2 0.043 1.5E-06 56.0 8.4 29 266-294 212-240 (437)
395 2xtp_A GTPase IMAP family memb 95.2 0.0087 3E-07 56.8 3.1 23 271-293 23-45 (260)
396 2bme_A RAB4A, RAS-related prot 95.2 0.008 2.7E-07 53.3 2.7 22 272-293 12-33 (186)
397 3cmw_A Protein RECA, recombina 95.2 0.069 2.4E-06 63.4 11.2 27 267-293 380-406 (1706)
398 1e4v_A Adenylate kinase; trans 95.2 0.0086 3E-07 55.1 2.9 23 272-294 2-24 (214)
399 1sxj_B Activator 1 37 kDa subu 95.2 0.021 7.1E-07 55.5 5.9 43 397-440 107-149 (323)
400 2gf9_A RAS-related protein RAB 95.2 0.009 3.1E-07 53.4 3.0 22 272-293 24-45 (189)
401 2dby_A GTP-binding protein; GD 95.2 0.007 2.4E-07 61.0 2.4 22 272-293 3-24 (368)
402 1nrj_B SR-beta, signal recogni 95.2 0.009 3.1E-07 54.7 3.0 24 271-294 13-36 (218)
403 2il1_A RAB12; G-protein, GDP, 95.2 0.01 3.5E-07 53.3 3.3 22 272-293 28-49 (192)
404 1vg8_A RAS-related protein RAB 95.2 0.0093 3.2E-07 53.9 3.0 22 272-293 10-31 (207)
405 1zbd_A Rabphilin-3A; G protein 95.2 0.011 3.6E-07 53.5 3.3 22 272-293 10-31 (203)
406 3d3q_A TRNA delta(2)-isopenten 95.2 0.0097 3.3E-07 59.1 3.2 25 271-295 8-32 (340)
407 4dhe_A Probable GTP-binding pr 95.2 0.0059 2E-07 56.2 1.6 25 270-294 29-53 (223)
408 2fg5_A RAB-22B, RAS-related pr 95.2 0.0088 3E-07 53.7 2.7 22 272-293 25-46 (192)
409 2bov_A RAla, RAS-related prote 95.1 0.0095 3.3E-07 53.7 3.0 22 272-293 16-37 (206)
410 2qu8_A Putative nucleolar GTP- 95.1 0.011 3.7E-07 54.9 3.3 23 271-293 30-52 (228)
411 1z06_A RAS-related protein RAB 95.1 0.01 3.4E-07 53.1 3.0 22 272-293 22-43 (189)
412 3iev_A GTP-binding protein ERA 95.1 0.01 3.6E-07 58.1 3.3 23 271-293 11-33 (308)
413 3kkq_A RAS-related protein M-R 95.1 0.013 4.5E-07 51.8 3.7 22 272-293 20-41 (183)
414 1mh1_A RAC1; GTP-binding, GTPa 95.1 0.01 3.5E-07 52.5 3.0 21 272-292 7-27 (186)
415 1ak2_A Adenylate kinase isoenz 95.1 0.012 4.2E-07 54.9 3.7 26 269-294 15-40 (233)
416 2cjw_A GTP-binding protein GEM 95.1 0.01 3.5E-07 53.6 3.0 22 272-293 8-29 (192)
417 2h92_A Cytidylate kinase; ross 95.1 0.0082 2.8E-07 55.3 2.4 25 270-294 3-27 (219)
418 2gf0_A GTP-binding protein DI- 95.1 0.0094 3.2E-07 53.5 2.7 22 271-292 9-30 (199)
419 4bas_A ADP-ribosylation factor 95.1 0.012 4E-07 52.9 3.3 23 271-293 18-40 (199)
420 3tkl_A RAS-related protein RAB 95.1 0.013 4.5E-07 52.3 3.7 22 272-293 18-39 (196)
421 2h57_A ADP-ribosylation factor 95.1 0.0095 3.2E-07 53.3 2.7 24 271-294 22-45 (190)
422 3bwd_D RAC-like GTP-binding pr 95.1 0.012 4.2E-07 51.8 3.3 24 270-293 8-31 (182)
423 1gwn_A RHO-related GTP-binding 95.0 0.016 5.3E-07 53.0 4.1 22 272-293 30-51 (205)
424 3oes_A GTPase rhebl1; small GT 95.0 0.0097 3.3E-07 53.9 2.7 23 271-293 25-47 (201)
425 2a5j_A RAS-related protein RAB 95.0 0.011 3.7E-07 53.0 3.0 22 272-293 23-44 (191)
426 3llu_A RAS-related GTP-binding 95.0 0.012 4.2E-07 53.0 3.3 26 271-296 21-46 (196)
427 3i8s_A Ferrous iron transport 95.0 0.011 3.7E-07 56.9 3.1 23 272-294 5-27 (274)
428 3dz8_A RAS-related protein RAB 95.0 0.01 3.4E-07 53.2 2.7 22 272-293 25-46 (191)
429 2o52_A RAS-related protein RAB 95.0 0.011 3.9E-07 53.4 3.1 22 272-293 27-48 (200)
430 3a1s_A Iron(II) transport prot 95.0 0.012 4.2E-07 56.1 3.4 23 272-294 7-29 (258)
431 3umf_A Adenylate kinase; rossm 95.0 0.01 3.5E-07 55.2 2.7 29 266-294 25-53 (217)
432 1zj6_A ADP-ribosylation factor 95.0 0.012 4.1E-07 52.5 3.0 23 270-292 16-38 (187)
433 2atv_A RERG, RAS-like estrogen 94.9 0.012 4.2E-07 52.9 3.0 23 271-293 29-51 (196)
434 2h17_A ADP-ribosylation factor 94.9 0.011 3.7E-07 52.5 2.6 23 271-293 22-44 (181)
435 3reg_A RHO-like small GTPase; 94.9 0.012 4.2E-07 52.8 3.0 22 272-293 25-46 (194)
436 2p5s_A RAS and EF-hand domain 94.9 0.012 4.2E-07 53.1 3.0 24 270-293 28-51 (199)
437 1x3s_A RAS-related protein RAB 94.9 0.012 4.2E-07 52.4 3.0 22 272-293 17-38 (195)
438 1zd9_A ADP-ribosylation factor 94.9 0.012 4.2E-07 52.6 3.0 23 271-293 23-45 (188)
439 3cph_A RAS-related protein SEC 94.9 0.012 4.1E-07 53.4 3.0 24 270-293 20-43 (213)
440 3v9p_A DTMP kinase, thymidylat 94.9 0.011 3.6E-07 55.5 2.6 28 268-295 23-50 (227)
441 4edh_A DTMP kinase, thymidylat 94.9 0.014 4.7E-07 54.1 3.3 29 268-296 4-32 (213)
442 3cnl_A YLQF, putative uncharac 94.9 0.014 4.9E-07 55.8 3.5 30 271-300 100-129 (262)
443 2f7s_A C25KG, RAS-related prot 94.9 0.015 5E-07 53.2 3.4 22 272-293 27-48 (217)
444 2bcg_Y Protein YP2, GTP-bindin 94.9 0.011 3.9E-07 53.5 2.7 22 272-293 10-31 (206)
445 2q3h_A RAS homolog gene family 94.9 0.015 5E-07 52.5 3.3 24 270-293 20-43 (201)
446 2iwr_A Centaurin gamma 1; ANK 94.9 0.01 3.4E-07 52.3 2.2 23 271-293 8-30 (178)
447 2fv8_A H6, RHO-related GTP-bin 94.9 0.012 4.1E-07 53.6 2.7 23 271-293 26-48 (207)
448 1jwy_B Dynamin A GTPase domain 94.8 0.013 4.3E-07 57.3 3.0 23 272-294 26-48 (315)
449 2j1l_A RHO-related GTP-binding 94.8 0.014 4.7E-07 53.6 3.1 21 272-292 36-56 (214)
450 1a5t_A Delta prime, HOLB; zinc 94.8 0.088 3E-06 52.0 9.2 42 397-439 108-149 (334)
451 3c5c_A RAS-like protein 12; GD 94.8 0.014 4.7E-07 52.3 3.0 21 272-292 23-43 (187)
452 3crm_A TRNA delta(2)-isopenten 94.8 0.014 4.8E-07 57.6 3.3 25 271-295 6-30 (323)
453 1ltq_A Polynucleotide kinase; 94.8 0.014 4.8E-07 56.5 3.3 22 271-292 3-24 (301)
454 1h65_A Chloroplast outer envel 94.8 0.014 4.6E-07 56.0 3.0 23 272-294 41-63 (270)
455 2b6h_A ADP-ribosylation factor 94.8 0.014 4.8E-07 52.5 3.0 24 269-292 28-51 (192)
456 3lv8_A DTMP kinase, thymidylat 94.8 0.015 5.3E-07 54.7 3.3 27 269-295 26-52 (236)
457 3def_A T7I23.11 protein; chlor 94.8 0.014 4.8E-07 55.6 3.1 22 272-293 38-59 (262)
458 2p65_A Hypothetical protein PF 94.8 0.013 4.6E-07 51.6 2.8 28 268-295 41-68 (187)
459 2wsm_A Hydrogenase expression/ 94.8 0.013 4.4E-07 53.8 2.7 24 271-294 31-54 (221)
460 2fu5_C RAS-related protein RAB 94.8 0.0099 3.4E-07 52.6 1.9 22 272-293 10-31 (183)
461 3foz_A TRNA delta(2)-isopenten 94.7 0.016 5.4E-07 56.8 3.4 26 270-295 10-35 (316)
462 3tmk_A Thymidylate kinase; pho 94.7 0.014 4.9E-07 54.2 2.9 29 268-296 3-31 (216)
463 2fh5_B SR-beta, signal recogni 94.7 0.019 6.6E-07 52.3 3.8 24 271-294 8-31 (214)
464 2aka_B Dynamin-1; fusion prote 94.7 0.014 4.8E-07 56.4 2.8 24 271-294 27-50 (299)
465 3euj_A Chromosome partition pr 94.7 0.051 1.8E-06 56.5 7.2 77 371-451 371-464 (483)
466 4tmk_A Protein (thymidylate ki 94.7 0.018 6.1E-07 53.4 3.4 27 269-295 2-28 (213)
467 1sky_E F1-ATPase, F1-ATP synth 94.6 0.016 5.3E-07 60.1 3.2 36 259-295 141-176 (473)
468 2gco_A H9, RHO-related GTP-bin 94.6 0.014 4.9E-07 52.8 2.7 22 272-293 27-48 (201)
469 2g3y_A GTP-binding protein GEM 94.6 0.019 6.5E-07 53.0 3.4 22 272-293 39-60 (211)
470 2ocp_A DGK, deoxyguanosine kin 94.6 0.017 5.8E-07 54.2 3.1 27 269-295 1-27 (241)
471 3ld9_A DTMP kinase, thymidylat 94.6 0.019 6.4E-07 53.7 3.3 28 268-295 19-46 (223)
472 1p5z_B DCK, deoxycytidine kina 94.6 0.013 4.3E-07 55.9 2.2 28 268-295 22-49 (263)
473 4djt_A GTP-binding nuclear pro 94.5 0.0097 3.3E-07 54.5 1.3 22 272-293 13-34 (218)
474 2atx_A Small GTP binding prote 94.5 0.016 5.6E-07 51.8 2.7 22 272-293 20-41 (194)
475 2x77_A ADP-ribosylation factor 94.5 0.014 4.7E-07 52.1 2.2 24 269-292 21-44 (189)
476 3tqf_A HPR(Ser) kinase; transf 94.4 0.028 9.5E-07 50.2 3.9 33 259-292 6-38 (181)
477 2zts_A Putative uncharacterize 94.4 0.026 9E-07 52.6 4.0 25 267-291 27-51 (251)
478 2r62_A Cell division protease 94.3 0.0065 2.2E-07 57.9 -0.4 29 263-293 39-67 (268)
479 3r7w_A Gtpase1, GTP-binding pr 94.3 0.022 7.6E-07 55.7 3.4 26 269-294 2-27 (307)
480 2hf9_A Probable hydrogenase ni 94.3 0.019 6.5E-07 52.9 2.7 24 271-294 39-62 (226)
481 2hup_A RAS-related protein RAB 94.2 0.02 7E-07 51.8 2.7 22 272-293 31-52 (201)
482 3eph_A TRNA isopentenyltransfe 94.2 0.022 7.4E-07 57.8 3.0 25 271-295 3-27 (409)
483 3cmu_A Protein RECA, recombina 94.2 0.21 7.3E-06 60.2 11.9 35 258-292 1067-1103(2050)
484 2yc2_C IFT27, small RAB-relate 94.2 0.011 3.8E-07 53.4 0.8 23 271-293 21-43 (208)
485 4gzl_A RAS-related C3 botulinu 94.2 0.021 7.1E-07 51.9 2.6 23 270-292 30-52 (204)
486 3cpj_B GTP-binding protein YPT 94.2 0.024 8.1E-07 52.3 3.0 22 272-293 15-36 (223)
487 3q3j_B RHO-related GTP-binding 94.1 0.024 8.2E-07 52.0 3.0 23 271-293 28-50 (214)
488 3sr0_A Adenylate kinase; phosp 93.9 0.03 1E-06 51.5 3.2 24 272-295 2-25 (206)
489 2v3c_C SRP54, signal recogniti 93.9 0.0075 2.6E-07 62.1 -1.1 34 271-304 100-133 (432)
490 2j0v_A RAC-like GTP-binding pr 93.8 0.027 9.3E-07 51.2 2.7 23 271-293 10-32 (212)
491 1puj_A YLQF, conserved hypothe 93.7 0.038 1.3E-06 53.4 3.7 27 270-296 120-146 (282)
492 1tue_A Replication protein E1; 93.6 0.024 8.2E-07 52.1 1.8 28 267-294 55-82 (212)
493 3qf4_A ABC transporter, ATP-bi 93.5 8.9 0.00031 40.6 28.4 12 244-255 358-369 (587)
494 3ec1_A YQEH GTPase; atnos1, at 93.5 0.033 1.1E-06 56.1 3.0 25 269-293 161-185 (369)
495 4a82_A Cystic fibrosis transme 93.4 9.3 0.00032 40.4 23.3 12 244-255 356-367 (578)
496 2orw_A Thymidine kinase; TMTK, 93.3 0.029 9.8E-07 50.6 1.9 53 396-452 75-138 (184)
497 3gj0_A GTP-binding nuclear pro 93.3 0.025 8.4E-07 52.0 1.4 21 272-292 17-38 (221)
498 4hlc_A DTMP kinase, thymidylat 93.2 0.047 1.6E-06 50.2 3.3 26 270-295 2-27 (205)
499 2x2e_A Dynamin-1; nitration, h 93.2 0.032 1.1E-06 55.7 2.3 23 272-294 33-55 (353)
500 3hws_A ATP-dependent CLP prote 93.2 0.043 1.5E-06 54.8 3.2 25 270-294 51-75 (363)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.1e-87 Score=778.76 Aligned_cols=476 Identities=20% Similarity=0.271 Sum_probs=410.5
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+|+|++++|++||+++++|++++|+++|++.++..+...+..++..++++++.+++++.++|.+++++++++++++++..
T Consensus 175 ~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~ 254 (1321)
T 4f4c_A 175 FVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGF 254 (1321)
T ss_dssp HHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999998888888888888889999999999999999887766666666666
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.+..++..++.+...++..+.+.|.++|+++||+|++++++.+++.+..+...+...+.............++..+.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1321)
T 4f4c_A 255 AIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISF 334 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888888999999999999999999999999988888877776665555444333333333334334333
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
++++++. ..+..|.++++.+..++.+...+..++..+...+..++.+..+++|+.++++.+++.+...+ ......+.
T Consensus 335 ~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~--~~~~~~~~ 412 (1321)
T 4f4c_A 335 ALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSK--AGRKDMKI 412 (1321)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSS--CCCCCCCC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc--ccccCCCC
Confidence 3333332 33557888888877777777777777777777888899999999999999986654321111 11112234
Q ss_pred CccEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 240 QGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
.+.|+|+||+|+||+. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+
T Consensus 413 ~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred CCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhh
Confidence 5689999999999753 456999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
+|+||+|+|++|++||+|||.++. +.+++++++||+.|+++++++.+|+|+||.|||+|.+|||||||||+||||+++|
T Consensus 493 ~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~ 572 (1321)
T 4f4c_A 493 NVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRN 572 (1321)
T ss_dssp HEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTC
T ss_pred cccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccC
Confidence 999999999999999999999985 5889999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
|+|||||||||+||+++|+.++++|.+..+++|+|+||||++++++||+|+||++|+|+|+|+|+||+++ ++.|++++.
T Consensus 573 ~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~ 651 (1321)
T 4f4c_A 573 PKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVT 651 (1321)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHH
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHH
Confidence 9999999999999999999999999998899999999999999999999999999999999999999997 789999987
Q ss_pred HH
Q 011281 478 EY 479 (489)
Q Consensus 478 ~~ 479 (489)
.+
T Consensus 652 ~q 653 (1321)
T 4f4c_A 652 AQ 653 (1321)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.2e-87 Score=780.66 Aligned_cols=476 Identities=20% Similarity=0.258 Sum_probs=373.7
Q ss_pred ChhHHhcCCcccccc--cCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDA--TPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWY 78 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~--~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~ 78 (489)
++++++++|++||+. +++|++++|+++|++.++..++..+..++..++++++.+++++.++|.++++++++++++++.
T Consensus 833 l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~ 912 (1321)
T 4f4c_A 833 LFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFG 912 (1321)
T ss_dssp HHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHH
Confidence 478999999999986 789999999999999999988888888888888888888999999999988777666665555
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 011281 79 QQYYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSI 158 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (489)
...+.+...+...+..+..++....+.|+++|+++||+|+.++++.+++.+..+...+...+......+.......+..+
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 992 (1321)
T 4f4c_A 913 QYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYL 992 (1321)
T ss_dssp HHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444433333334444556677888999999999999999999999888877766554444333222222222222222
Q ss_pred HHHHHHHHHH-HhcCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCC
Q 011281 159 IFVFSLFFII-SVPEGV--VDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNC 235 (489)
Q Consensus 159 ~~~~~~~~~~-~~~~g~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~ 235 (489)
...+++++.. .+..+. +.+..+..++.+......+...+......+..+..+++|+.++++.+++.+. ...+..
T Consensus 993 ~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~~~ 1069 (1321)
T 4f4c_A 993 LNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDS---LSLAGE 1069 (1321)
T ss_dssp HHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCT---TCCCSB
T ss_pred HHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCC---ccCCCC
Confidence 2222222222 222333 2222222222221111122233445567788899999999999987654321 111222
Q ss_pred CCCCCccEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH
Q 011281 236 SWPSQGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH 314 (489)
Q Consensus 236 ~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~ 314 (489)
.++..+.|+|+||+|+||+. +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+
T Consensus 1070 ~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~ 1149 (1321)
T 4f4c_A 1070 KKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPE 1149 (1321)
T ss_dssp CCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHH
T ss_pred CCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHH
Confidence 34556789999999999754 34699999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccceEEcCCCccCccchhhhcCCC---CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNLDPL---EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni~~~---~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
++|++|++|||||+||+|||||||.++ ++++++++++|++.+++++++.++|+||||+|||+|.+||||||||||||
T Consensus 1150 ~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiA 1229 (1321)
T 4f4c_A 1150 HTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIA 1229 (1321)
T ss_dssp HHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHH
T ss_pred HHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHH
Confidence 999999999999999999999999986 35789999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCCh
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSS 471 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~ 471 (489)
|||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++++||||+||++|+|+|+|+|+||+++ ++.
T Consensus 1230 RAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~ 1308 (1321)
T 4f4c_A 1230 RALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGA 1308 (1321)
T ss_dssp HHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C--
T ss_pred HHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcH
Confidence 9999999999999999999999999999999999899999999999999999999999999999999999999997 688
Q ss_pred HHHHHHHHh
Q 011281 472 FAQLVAEYT 480 (489)
Q Consensus 472 ~~~l~~~~~ 480 (489)
|++|++.|.
T Consensus 1309 y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1309 YYKLTQKQM 1317 (1321)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 999998764
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-83 Score=693.99 Aligned_cols=477 Identities=21% Similarity=0.306 Sum_probs=400.3
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+++|++++|+.+|+++++|++++|+++|++.++.++...+..++..++++++.+++++.++|.+++++++++++++++..
T Consensus 102 l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~ 181 (587)
T 3qf4_A 102 LFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFV 181 (587)
T ss_dssp HHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999888887888888888888888899999988776666666555556
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
++.++.++..++..+..+++.+.+.|.++|+++||+|++++.+.+++.+..+.+.+...+.............++..+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (587)
T 3qf4_A 182 WLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGM 261 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777888999999999999999999999999888888777766655444433323333222333333322
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
.+.+++. ..+..|.++.+.+..++.+...+..+...+...+..++++..+++|+.++++.+++.+.. ..+....+.
T Consensus 262 ~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~ 338 (587)
T 3qf4_A 262 IAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEA---DNALALPNV 338 (587)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC---TTCBCCSCC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC---CCccccCCC
Confidence 2222222 234467788777777777777776776667777788899999999999999865432211 111111123
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.|+++||+|+|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 45799999999998665679999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
|+||||+|++|++|++||+.++. ..++++++++++.+++.+++..+|+|+||.+|++|.+||||||||++||||++++|
T Consensus 419 i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p 498 (587)
T 3qf4_A 419 ISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP 498 (587)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCC
T ss_pred eEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999874 57889999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
+++|||||||+||+++++.+++.+++..+++|+|+||||++++..||||++|++|+|+++|+|+|++++ ++.|++++..
T Consensus 499 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~-~~~~~~~~~~ 577 (587)
T 3qf4_A 499 KVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH-CKPYREIYES 577 (587)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH-CHHHHHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHH
Confidence 999999999999999999999999988889999999999999999999999999999999999999987 6789999887
Q ss_pred Hhc
Q 011281 479 YTQ 481 (489)
Q Consensus 479 ~~~ 481 (489)
+.+
T Consensus 578 ~~~ 580 (587)
T 3qf4_A 578 QFG 580 (587)
T ss_dssp HC-
T ss_pred Hhc
Confidence 643
No 4
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.4e-83 Score=693.36 Aligned_cols=475 Identities=21% Similarity=0.276 Sum_probs=400.3
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+++|++++|+.||+++++|++++|+++|++.++.++...+..++.+++++++.+++++.++|.++++.++++++++++..
T Consensus 100 l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~ 179 (578)
T 4a82_A 100 LYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179 (578)
T ss_dssp HHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999998887777777788888888888999999998876655566555666
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.++.++..++.....+++.+.+.|.++|+++||+|+.++.+.+++.+..++..+...+.............++..+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (578)
T 4a82_A 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGP 259 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777778888888999999999999999999999999888888877766655444433333333333333333322
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
++++++. +.+..|.++.+.+..++.+...+..++..+...+..++++..+++|+.++++.+++.+.. .......+.
T Consensus 260 ~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~ 336 (578)
T 4a82_A 260 IIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG---VGAQPIEIK 336 (578)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC---TTCCCCCCC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---CCccccCCC
Confidence 2222222 223457788777777777777777777777788889999999999999999866543211 111111123
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.|+++||+|+|++..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++++++.+++|++
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46799999999998755579999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
|+||||+|++|++|++||+.++. ..++++++++++.+++.++++++|+|+||.+|++|.+||||||||++||||++++|
T Consensus 417 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p 496 (578)
T 4a82_A 417 IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP 496 (578)
T ss_dssp EEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCC
T ss_pred eEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999864 56789999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
+++|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||||++|++|+|+++|+|+|++++ ++.|++++..
T Consensus 497 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~-~~~~~~~~~~ 575 (578)
T 4a82_A 497 PILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSI 575 (578)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHHTT
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHh
Confidence 999999999999999999999999988888999999999999999999999999999999999999987 6789888764
Q ss_pred H
Q 011281 479 Y 479 (489)
Q Consensus 479 ~ 479 (489)
+
T Consensus 576 q 576 (578)
T 4a82_A 576 Q 576 (578)
T ss_dssp T
T ss_pred h
Confidence 3
No 5
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1e-81 Score=682.63 Aligned_cols=474 Identities=23% Similarity=0.361 Sum_probs=407.0
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
++++++++|+.||+++++|++++|+++|++.++.++...+..++.+++++++.+++++.++|.+++++++++++.+++..
T Consensus 104 l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~ 183 (582)
T 3b5x_A 104 LFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAIS 183 (582)
T ss_pred HHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998888888888888888888889999999998877666666655666
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.++.++..+...+..+++.+.+.|.++|+++||+|+.++.+.+++.+..+...+...+......+......++..+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (582)
T 3b5x_A 184 FVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLAL 263 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777788888999999999999999999999999988888887777766655555444455444444444433
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
.+++++. +.+..|.++.+.+..++.+...+..++..+...+..++.+..+++|+.++++.+++.+ +...+ ..+.
T Consensus 264 ~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~---~~~~~--~~~~ 338 (582)
T 3b5x_A 264 FAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD---NGKYE--AERV 338 (582)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC---CCCCC--CCCC
Confidence 3333322 3344678888887888888878888888788888899999999999999997654421 11001 1122
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.|+++||+|+|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.+++|++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 35699999999997543469999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCCC--CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
|+||||+|++|++|++||+.++. +.++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||++++
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~ 498 (582)
T 3b5x_A 419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD 498 (582)
T ss_pred eEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999864 5678999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
|+++|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||||++|++|+|++.|+|+|++++ .+.|+++++
T Consensus 499 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 577 (582)
T 3b5x_A 499 APVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQLHR 577 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 9999999999999999999999999988779999999999999999999999999999999999999986 678999988
Q ss_pred HHh
Q 011281 478 EYT 480 (489)
Q Consensus 478 ~~~ 480 (489)
.+.
T Consensus 578 ~q~ 580 (582)
T 3b5x_A 578 IQF 580 (582)
T ss_pred Hhh
Confidence 653
No 6
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-83 Score=695.28 Aligned_cols=475 Identities=24% Similarity=0.346 Sum_probs=405.2
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+++|++++|+.||+++++|++++|+++|++.++.++...+..++.+++++++.+++++.++|.+++++++++++.+++..
T Consensus 116 l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~ 195 (598)
T 3qf4_B 116 LFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQ 195 (598)
T ss_dssp HHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999988888888888888999999999999999877666666666666
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
++.+..++..+...+..+++.+.+.|.++|+++||+|++++++.+++.+..+...+...+......+......++..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (598)
T 3qf4_B 196 IVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGF 275 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888888999999999999999999999999998888877776655444433333333333333333333
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
++.+++. +.+..|.++.+.+..++.+...+..++..+...+..++.+..+++|+.++++.+++.+. .......+.
T Consensus 276 ~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~----~~~~~~~~~ 351 (598)
T 3qf4_B 276 ALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD----PDAVELREV 351 (598)
T ss_dssp HHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC----SSCCCCCSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCCCCCCCC
Confidence 3333322 33456778877777777776666677777778888899999999999999987654321 111111233
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.|+++||+|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++++++.+++|++
T Consensus 352 ~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp CCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CCeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhc
Confidence 4579999999999754 359999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
|+||||+|++|++|++||+.++. ..++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||++++|
T Consensus 431 i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p 510 (598)
T 3qf4_B 431 IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP 510 (598)
T ss_dssp EEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCC
T ss_pred eEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999874 56788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
+++|||||||+||+++++.+++.+++..+++|+|+||||+++++.||+|++|++|+|+++|+|+|++++ ++.|++++..
T Consensus 511 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 589 (598)
T 3qf4_B 511 KILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTS 589 (598)
T ss_dssp SEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT-TCHHHHHHHH
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHH
Confidence 999999999999999999999999988789999999999999999999999999999999999999987 6889999987
Q ss_pred Hhc
Q 011281 479 YTQ 481 (489)
Q Consensus 479 ~~~ 481 (489)
+.+
T Consensus 590 ~~~ 592 (598)
T 3qf4_B 590 QYG 592 (598)
T ss_dssp HHG
T ss_pred Hhh
Confidence 553
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1e-81 Score=682.63 Aligned_cols=473 Identities=23% Similarity=0.322 Sum_probs=406.4
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
++++++++|+.||+++++|++++|+++|++.++.++...+..++.+++++++.+++++.++|.+++++++++++++++..
T Consensus 104 l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~ 183 (582)
T 3b60_A 104 LFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIR 183 (582)
T ss_dssp HHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999998888888888888888888888999999988876666666555666
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.++.++..++..+..+++.+.+.|.++|+++||+|+.++.+.+++.+..+...+...+......+......++..+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (582)
T 3b60_A 184 VVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLAL 263 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777788888888999999999999999999999999999888887777766665555545555554555444443
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
.+.+++. +.+..|.++.+.+..++.+...+..++..+...+..++.+..+++|+.++++.+++.+. ...+ ..+.
T Consensus 264 ~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~~~~ 338 (582)
T 3b60_A 264 AFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE---GKRV--IDRA 338 (582)
T ss_dssp HHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC---CCBC--CSCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC---CCCC--CCCC
Confidence 3333332 23446778877777777777778788777888888999999999999999986554221 1001 1122
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+.|+++||+|+|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++++++.+++|++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 35699999999997533469999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEcCCCccCccchhhhcCCCC--CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
|+||||+|++|++|++||+.++. +.++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||++++
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~ 498 (582)
T 3b60_A 419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred CeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999864 5678999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
|+++|||||||+||+++++.+++.+++..+++|+|+||||++.++.||||++|++|+|++.|+|+|++++ ++.|+++++
T Consensus 499 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 577 (582)
T 3b60_A 499 SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHK 577 (582)
T ss_dssp CSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHH
Confidence 9999999999999999999999999987779999999999999999999999999999999999999987 678999987
Q ss_pred HH
Q 011281 478 EY 479 (489)
Q Consensus 478 ~~ 479 (489)
.+
T Consensus 578 ~q 579 (582)
T 3b60_A 578 MQ 579 (582)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.4e-81 Score=680.12 Aligned_cols=478 Identities=23% Similarity=0.299 Sum_probs=389.1
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
++++++++|+.||+++++|++++|+++|++.++.++...+..++.+++++++.+++++.++|.++++++..+++++++..
T Consensus 101 l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~ 180 (595)
T 2yl4_A 101 LFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAV 180 (595)
T ss_dssp HHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999988888888888888888888889999999998776655555555556
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
.+.+..++..+...+..+++.+.+.|.++|+++||+|+.++++.+++.+..+.+.+...+......+......++..+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (595)
T 2yl4_A 181 IYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIV 260 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777888889999999999999999999999988888877777665555444433444333333333333
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
.+.+++. +.+..|.++.+.+..++.+...+..++..+...+..++++..+++|+.++++.+++.+.. ....+ ..+.
T Consensus 261 ~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~~~~--~~~~ 337 (595)
T 2yl4_A 261 LSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN-EGVIL--NEKS 337 (595)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS-CSBCC--CTTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC-CCCCC--CcCC
Confidence 3222222 234467888887777777777777777778888888999999999999999865432210 01111 0122
Q ss_pred Ccc-EEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhh
Q 011281 240 QGE-VDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR 317 (489)
Q Consensus 240 ~~~-i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r 317 (489)
.+. |+++||+|+|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++++++.+++|
T Consensus 338 ~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 338 FQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp CCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHH
Confidence 356 9999999999753 24699999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEcCCCccCccchhhhcCCCCC----CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 318 SRLSIIPQDPTMFEGSVHNNLDPLEE----YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~----~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
++|+||||+|++|++|++||+.++.+ .++++++++++.++++++++++|+|+||++|++|.+||||||||++||||
T Consensus 418 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp HSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHH
T ss_pred hceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 99999999999999999999988643 57889999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHH
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFA 473 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~ 473 (489)
|+++|+++|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||||++|++|+|++.|+|+|+++++++.|+
T Consensus 498 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 577 (595)
T 2yl4_A 498 LLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYR 577 (595)
T ss_dssp HHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C---
T ss_pred HHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHH
Confidence 99999999999999999999999999999988778999999999999999999999999999999999999975467899
Q ss_pred HHHHHHhc
Q 011281 474 QLVAEYTQ 481 (489)
Q Consensus 474 ~l~~~~~~ 481 (489)
+++..+..
T Consensus 578 ~~~~~q~~ 585 (595)
T 2yl4_A 578 KLMNKQSF 585 (595)
T ss_dssp --------
T ss_pred HHHHHhhc
Confidence 98876543
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.9e-79 Score=711.07 Aligned_cols=476 Identities=19% Similarity=0.268 Sum_probs=392.9
Q ss_pred ChhHHhcCCcccccccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFDATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWYQQ 80 (489)
Q Consensus 1 ~~~~ll~~~~~~f~~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~~~ 80 (489)
+|++++++|++||+++++|++++|+++|++.++..+...+..++..++++++.+++++.++|.+++++++++++++++..
T Consensus 147 l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~ 226 (1284)
T 3g5u_A 147 FFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAG 226 (1284)
T ss_dssp HHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999998899888888989999999999998887777776666666
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011281 81 YYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSIIF 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (489)
++.+..++..++..+..++..+.+.|+++|+++||+|+.++++.+++.+..+...+...+.............++..+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (1284)
T 3g5u_A 227 IWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASY 306 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777788888899999999999999999999998887777776666555443332222222222333333333
Q ss_pred HHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC
Q 011281 161 VFSLFFI-ISVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS 239 (489)
Q Consensus 161 ~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (489)
++.+++. ..+..|.++.+.+..++.+......++..+...+..++.+..+++|+.++++.+++.+...+. .....+.
T Consensus 307 ~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~~~ 384 (1284)
T 3g5u_A 307 ALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKS--GHKPDNI 384 (1284)
T ss_dssp HHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSS--CCCCTTC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccccc--CCCCCCC
Confidence 3333332 122345555544443333333344444555666778889999999999998765442211111 1111123
Q ss_pred CccEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc
Q 011281 240 QGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS 318 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 318 (489)
.+.|+++||+|+|++. ..++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|++.++.+++|+
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 4679999999999853 346999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 319 RLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
+|+||+|+|++|++||+|||.++. +.++++++++++.+++++++.++|+|+||.+|++|.+|||||||||+|||||+++
T Consensus 465 ~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~ 544 (1284)
T 3g5u_A 465 IIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRN 544 (1284)
T ss_dssp HEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHC
T ss_pred heEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999864 5789999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
|+|||||||||+||+++++.+++.++...+++|+|+||||++++..||+|+||++|+|+++|+|+||+++ ++.|++++.
T Consensus 545 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~ 623 (1284)
T 3g5u_A 545 PKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVM 623 (1284)
T ss_dssp CSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHH
Confidence 9999999999999999999999999888889999999999999999999999999999999999999987 678888876
Q ss_pred HH
Q 011281 478 EY 479 (489)
Q Consensus 478 ~~ 479 (489)
.+
T Consensus 624 ~~ 625 (1284)
T 3g5u_A 624 TQ 625 (1284)
T ss_dssp HT
T ss_pred Hh
Confidence 53
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.1e-75 Score=679.10 Aligned_cols=481 Identities=21% Similarity=0.286 Sum_probs=378.4
Q ss_pred ChhHHhcCCccccc--ccCccHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011281 1 MHFCLFRAPMSFFD--ATPSGRVLNRASSDQSTVDLSIASNVGGVAFSVIQILGVIAVISQAGWQVFIAFIPVIAISIWY 78 (489)
Q Consensus 1 ~~~~ll~~~~~~f~--~~~~G~il~rl~~D~~~i~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~l~l~~~~~~~l~~~~ 78 (489)
++++++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.+++++++++++++++
T Consensus 788 l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~ 867 (1284)
T 3g5u_A 788 VFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIA 867 (1284)
T ss_dssp HHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 47899999999999 4889999999999999999999888888888888888888889999998877666555554444
Q ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 011281 79 QQYYLPSARELSRLVGVSKAPVIQHFAETISGSTIIRSFDQVSRFQDTNMKLVDGYSRPKFHIAAAMQWLCFHIDMLSSI 158 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (489)
.....+..+....+.....+.....+.|+++|+++||+|+.++++.+++.+..+...+...+..............+..+
T Consensus 868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1284)
T 3g5u_A 868 GVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYF 947 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455556667789999999999999999999998887776665443333322222222222222222
Q ss_pred HHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCC
Q 011281 159 IFVFSLFFII-SVPEGVVDPAIAGLAVTFGLNLNMLQASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSW 237 (489)
Q Consensus 159 ~~~~~~~~~~-~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~ 237 (489)
...+.+++.. .+..+.++.+.+..++.+......+...+......+..+..+++|+.++++.+++.+..... .....
T Consensus 948 ~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~ 1025 (1284)
T 3g5u_A 948 SYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQ--GLKPN 1025 (1284)
T ss_dssp HHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSS--CCCTT
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc--ccccc
Confidence 2222222222 23345555444443333333333333333333344667888999999998765543211111 11112
Q ss_pred CCCccEEEEEEEEEECCC-CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh
Q 011281 238 PSQGEVDIHGLQVRYAPH-LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL 316 (489)
Q Consensus 238 ~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 316 (489)
+..+.|+++||+|+|++. ..++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||++++.++.+++
T Consensus 1026 ~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1026 MLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp TTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHH
T ss_pred CCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHH
Confidence 334679999999999753 2359999999999999999999999999999999999999999999999999999999999
Q ss_pred hccceEEcCCCccCccchhhhcCCCC---CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 317 RSRLSIIPQDPTMFEGSVHNNLDPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 317 r~~i~~v~Q~~~lf~~ti~~Ni~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
|++|+||||+|.+|++||+||+.++. ..++++++++++.+++++++.++|+||||.+||+|.+|||||||||+||||
T Consensus 1106 r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp TTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred HhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999998864 367899999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHH
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFA 473 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~ 473 (489)
|+++|+|||||||||+||+++++.+++.+++..+++|+|+||||++++..||||+||++|+|++.|+|+|++++ ++.|+
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~g~y~ 1264 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYF 1264 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHS-CSHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHH
Confidence 99999999999999999999999999999888789999999999999999999999999999999999999987 68999
Q ss_pred HHHHHHhcCCC
Q 011281 474 QLVAEYTQRSN 484 (489)
Q Consensus 474 ~l~~~~~~~~~ 484 (489)
+|+..+....+
T Consensus 1265 ~l~~~q~~~~~ 1275 (1284)
T 3g5u_A 1265 SMVSVQAGAKR 1275 (1284)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHhhccc
Confidence 99987765544
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.5e-67 Score=522.03 Aligned_cols=277 Identities=26% Similarity=0.428 Sum_probs=245.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCC
Q 011281 201 LCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTG 280 (489)
Q Consensus 201 ~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sG 280 (489)
...++.++++++|++++++.+++.... .......+..+.|+++||+|+|++. .++|+|+||+|++||+++||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDL---PGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCC---TTCBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSC
T ss_pred chhHHHHHHHHHHHHHHHhCCcccccc---ccccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCC
Confidence 456778889999999988644322110 0011111234579999999999754 459999999999999999999999
Q ss_pred CcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCc
Q 011281 281 SGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLG 359 (489)
Q Consensus 281 sGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~ 359 (489)
||||||+++|+|+|+|++|+|.+||+++..++..++|+.|+||||+|++|++||+|||.++. ..++++++++++.+++.
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999875 56788999999999999
Q ss_pred HHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCch
Q 011281 360 NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT 439 (489)
Q Consensus 360 ~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 439 (489)
+++..+|+||+|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.+++.|++.|.++.+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999998878899999999999
Q ss_pred hhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHHhcC
Q 011281 440 SVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEYTQR 482 (489)
Q Consensus 440 ~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~~~~~ 482 (489)
++..||+|++|++|+|++.|+|+|++++ ++.|++++..+...
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~~ 292 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQGQ 292 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHCC
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHhh
Confidence 9999999999999999999999999987 68999999876643
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.1e-58 Score=449.22 Aligned_cols=240 Identities=28% Similarity=0.451 Sum_probs=222.2
Q ss_pred CccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 240 QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 240 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
...|+++||+|+|+++..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+.
T Consensus 5 ~~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp CEEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred cCceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 35799999999995323469999999999999999999999999999999999999999999999999998888888999
Q ss_pred ceEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
|+||||+|.+|+.|++||+.++. ..+++++.++++.+++.+++.++|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998863 35677889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
+++|||||||+||+.+++.+++.|++..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+.+.+.|.+++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999988767899999999999998899999999999999999999987656788888764
Q ss_pred H
Q 011281 479 Y 479 (489)
Q Consensus 479 ~ 479 (489)
+
T Consensus 245 ~ 245 (247)
T 2ff7_A 245 Q 245 (247)
T ss_dssp H
T ss_pred h
Confidence 4
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=8.9e-57 Score=439.04 Aligned_cols=237 Identities=29% Similarity=0.467 Sum_probs=218.9
Q ss_pred cEEEEEEEEEECCCC-CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 242 EVDIHGLQVRYAPHL-PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
.|+++||+|+|++.. .++|+|+||++++||+++|+||||||||||+++|+|+++| +|+|.++|+++...+...+|+.|
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 599999999997532 3599999999999999999999999999999999999987 89999999999888888889999
Q ss_pred eEEcCCCccCccchhhhcCCCC-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC
Q 011281 321 SIIPQDPTMFEGSVHNNLDPLE-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK 399 (489)
Q Consensus 321 ~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ 399 (489)
+||+|+|.+|+.|++||+.++. ...++++.++++.+++.+++..+|++++|.+++.+.+||||||||++|||||+++|+
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999998753 345778899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHHH
Q 011281 400 VLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAEY 479 (489)
Q Consensus 400 illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~~ 479 (489)
+||||||||+||+.+++.+++.|.+..+++|+|+|||+++.+..||+|++|++|+|++.|+++++++. .+.|.+++..+
T Consensus 176 lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 254 (260)
T 2ghi_A 176 IVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNMQ 254 (260)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHhh
Confidence 99999999999999999999999887778999999999999888999999999999999999999876 56788887655
Q ss_pred h
Q 011281 480 T 480 (489)
Q Consensus 480 ~ 480 (489)
.
T Consensus 255 ~ 255 (260)
T 2ghi_A 255 S 255 (260)
T ss_dssp H
T ss_pred h
Confidence 3
No 14
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-57 Score=441.31 Aligned_cols=233 Identities=31% Similarity=0.530 Sum_probs=215.8
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++||+|+|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+.|+|
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 7899999999533 359999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCCccCccchhhhcCCC--CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCE
Q 011281 323 IPQDPTMFEGSVHNNLDPL--EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 400 (489)
Q Consensus 323 v~Q~~~lf~~ti~~Ni~~~--~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~i 400 (489)
|||+|.+|+.|++||+.++ ...+++++.++++.+++.++++++|.|+++.+++.+.+||||||||++|||||+++|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999886 24567889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 401 LVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 401 lllDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
||||||||+||+.+++.+.+.|++..+++|+|+|||+++.+..||||++|++|++++.|+++++.+. ...|++++.
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 236 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVS 236 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHH
Confidence 9999999999999999999999887678999999999999888999999999999999999999876 456776665
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.7e-56 Score=438.04 Aligned_cols=239 Identities=28% Similarity=0.400 Sum_probs=216.7
Q ss_pred ccEEEEEEEEEECC-CCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 241 GEVDIHGLQVRYAP-HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 241 ~~i~~~~v~~~y~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
..|+++||+|+|++ ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|+.
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999975 22459999999999999999999999999999999999999999999999999988877788889
Q ss_pred ceEEcCCCccCccchhhhcCCCC-CCcH-HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 320 LSIIPQDPTMFEGSVHNNLDPLE-EYAD-EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 320 i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~-~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
|+||+|++.+|+.|++||+.++. .... +++.++++..++.++++.+|.|+++.+++.+.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998753 2333 667788888999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQL 475 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l 475 (489)
|++||||||||+||+.+++.+.+.|.+..+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++.+. .+.|.++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 253 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRSM 253 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHHH
Confidence 999999999999999999999999988653 7899999999999888999999999999999999999876 4788888
Q ss_pred HHHHh
Q 011281 476 VAEYT 480 (489)
Q Consensus 476 ~~~~~ 480 (489)
+..+.
T Consensus 254 ~~~~~ 258 (271)
T 2ixe_A 254 VEALA 258 (271)
T ss_dssp HHC--
T ss_pred HHHhh
Confidence 76543
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-56 Score=457.37 Aligned_cols=236 Identities=36% Similarity=0.654 Sum_probs=221.2
Q ss_pred CCCCccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh
Q 011281 237 WPSQGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL 316 (489)
Q Consensus 237 ~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 316 (489)
++....|+++||+++|++....+|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+++..++.+.+
T Consensus 14 ~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp SSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHH
T ss_pred CCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHH
Confidence 34456799999999996544569999999999999999999999999999999999998 99999999999999999999
Q ss_pred hccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 317 RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 317 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
|+.|+||+|++.+|+.|++||+.+.....+++++++++.+++.+++++.|.+++|.++++|.+||||||||++|||||++
T Consensus 93 rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 93 RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp HHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred hCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998766667889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHH
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFA 473 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~ 473 (489)
+|++||||||||+||+.++..+++.|++...++|+|+|||+++.+..||||++|++|+|++.|+++|++.++...|.
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~v 249 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHH
Confidence 99999999999999999999999999887678999999999998888999999999999999999999988766664
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.5e-54 Score=413.18 Aligned_cols=221 Identities=23% Similarity=0.333 Sum_probs=199.1
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+|+|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .|+
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~ 72 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RIS 72 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEE
Confidence 5899999999974334699999999999999999999999999999999999999999999998 499
Q ss_pred EEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEE
Q 011281 322 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 401 (489)
Q Consensus 322 ~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~il 401 (489)
|+||+|.+|+.|++||+.++....+.+..++++.+++.++++.+|.++++.+++.+.+||||||||++|||||+++|+++
T Consensus 73 ~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll 152 (229)
T 2pze_A 73 FCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 152 (229)
T ss_dssp EECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred EEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999886544555677788899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH-HHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHH
Q 011281 402 VLDEATASVDTATDNLIQHTL-GQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLV 476 (489)
Q Consensus 402 llDEpts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~ 476 (489)
|||||||+||+.+++.+.+.+ ....+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. ...|.+++
T Consensus 153 lLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 227 (229)
T 2pze_A 153 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSKL 227 (229)
T ss_dssp EEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHHH
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHh
Confidence 999999999999999999874 454457899999999999888999999999999999999999875 34565543
No 18
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.7e-54 Score=415.91 Aligned_cols=225 Identities=24% Similarity=0.391 Sum_probs=203.2
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+|+|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .|+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 3899999999974334699999999999999999999999999999999999999999999998 499
Q ss_pred EEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEE
Q 011281 322 IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 401 (489)
Q Consensus 322 ~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~il 401 (489)
||||+|.+|..|++||+.++....+++..++++.+++.+.+..+|.|++|.+++.+.+||||||||++|||||+++|+++
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ll 149 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 149 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred EEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999888999999886544445667788889998888889999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH---HhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 402 VLDEATASVDTATDNLIQHTLG---QHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 402 llDEpts~lD~~~~~~i~~~l~---~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
|||||||+||+.+++.+.+.+. ...+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. .+.|.+++..
T Consensus 150 lLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 228 (237)
T 2cbz_A 150 LFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLRT 228 (237)
T ss_dssp EEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred EEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHHHH
Confidence 9999999999999999999984 33458899999999999888999999999999999999999886 5678887765
Q ss_pred Hh
Q 011281 479 YT 480 (489)
Q Consensus 479 ~~ 480 (489)
+.
T Consensus 229 ~~ 230 (237)
T 2cbz_A 229 YA 230 (237)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.4e-52 Score=424.04 Aligned_cols=224 Identities=25% Similarity=0.376 Sum_probs=196.3
Q ss_pred ccEEEEEEEEEECCCC--CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---
Q 011281 241 GEVDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD--- 315 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~--- 315 (489)
..|+++||+++|+... ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999997532 35899999999999999999999999999999999999999999999999999988665
Q ss_pred hhccceEEcCCCccCcc-chhhhcCCC---CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 316 LRSRLSIIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 316 ~r~~i~~v~Q~~~lf~~-ti~~Ni~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
+|+.||||||++.+|+. |++||+.++ ...+ .+++.++++.+++.+..++.| .+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----------~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT-----------TTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 47889999999999875 999999763 1222 346788899998877655444 5679999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
++|||||+.+|++||||||||+||+.+.+.+++.|+++. .+.|+|+|||+++.+.. ||||++|++|+|++.|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998764 38999999999999986 999999999999999999999
Q ss_pred hhcCCChHHHH
Q 011281 465 LENKSSSFAQL 475 (489)
Q Consensus 465 ~~~~~~~~~~l 475 (489)
+.++...|.+.
T Consensus 252 ~~~p~~~~~~~ 262 (366)
T 3tui_C 252 FSHPKTPLAQK 262 (366)
T ss_dssp HSSCCSHHHHH
T ss_pred HhCCCcHHHHH
Confidence 98766666443
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.3e-52 Score=410.17 Aligned_cols=214 Identities=29% Similarity=0.397 Sum_probs=187.4
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC--CCChHHhhcc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--SIGLHDLRSR 319 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 319 (489)
.|+++||+|+|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+.
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 58999999999754 34999999999999999999999999999999999999999999999999994 2234567889
Q ss_pred ceEEcCCC--ccCccchhhhcCCC---CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 320 LSIIPQDP--TMFEGSVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 320 i~~v~Q~~--~lf~~ti~~Ni~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
||||||+| .+|..|++||+.++ ...+ .+++.++++.+++.++.++.| .+||||||||++|
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGqkQRv~i 154 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPT-----------HCLSFGQKKRVAI 154 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBG-----------GGSCHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCc-----------ccCCHHHHHHHHH
Confidence 99999998 47778999999753 1222 346788899999877655444 3579999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
||||+.+|++||||||||+||+.+++.+++.|+++. .++|+|+|||+++.+.. ||||++|++|+|++.|+++++.+.
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 38999999999999976 999999999999999999999865
No 21
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.3e-52 Score=400.11 Aligned_cols=213 Identities=22% Similarity=0.308 Sum_probs=181.7
Q ss_pred EEEEEEEEEECCCC--CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh----
Q 011281 243 VDIHGLQVRYAPHL--PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL---- 316 (489)
Q Consensus 243 i~~~~v~~~y~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---- 316 (489)
|+++||+|+|++.. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 358999999999999999999999999999999999999999999999999998887654
Q ss_pred hccceEEcCCCccCcc-chhhhcCCC------CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 317 RSRLSIIPQDPTMFEG-SVHNNLDPL------EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 317 r~~i~~v~Q~~~lf~~-ti~~Ni~~~------~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
|+.|+||+|+|.+|+. |++||+.++ .... .+++.++++.+++.+.. ......+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 4569999999999986 999999642 1122 34567788888876542 1123455899999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEecCchhhhhcCEEEEEeCCEEEEecChhH
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTR 463 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~e 463 (489)
||++|||||+.+|++||||||||+||+.+++.+.+.++++. + ++|+|+|||+++.+..||||++|++|+|++.++.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 99999999999999999999999999999999999998764 3 899999999999877799999999999999998877
Q ss_pred Hh
Q 011281 464 LL 465 (489)
Q Consensus 464 l~ 465 (489)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 54
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.5e-51 Score=395.08 Aligned_cols=214 Identities=20% Similarity=0.356 Sum_probs=183.7
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh-hccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 320 (489)
.++++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+ ++.|
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 4899999999965 359999999999999999999999999999999999999999999999999988776655 4569
Q ss_pred eEEcCCCccCcc-chhhhcCCCC--CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLE--EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~--~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
+||||++.+|+. |++||+.++. ... .+++.++++.+ + |++...+....+||||||||++||||
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~---------~-~l~~~~~~~~~~LSgGq~qrv~lAra 153 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF---------P-RLKERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC---------H-HHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHc---------c-cHhhHhcCChhhCCHHHHHHHHHHHH
Confidence 999999999987 9999997642 111 22344444444 2 23344555677899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|+++|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999999998764 58999999999988765 999999999999999999999753
No 23
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=5e-51 Score=398.33 Aligned_cols=218 Identities=26% Similarity=0.416 Sum_probs=189.6
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC--CCChHHhhcc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--SIGLHDLRSR 319 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 319 (489)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+.
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4999999999964 35999999999999999999999999999999999999999999999999985 3344567888
Q ss_pred ceEEcCCCccCcc-chhhhcCCCC----CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 320 LSIIPQDPTMFEG-SVHNNLDPLE----EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 320 i~~v~Q~~~lf~~-ti~~Ni~~~~----~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
|+||+|++.+|+. |++||+.++. ..+ ++++.++++.+++.++.++.| .+||||||||++|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGqkQRv~l 170 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP-----------DSLSGGQAQRVAI 170 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCh-----------hhCCHHHHHHHHH
Confidence 9999999999876 9999997631 222 346788899998876644433 4579999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 468 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~ 468 (489)
||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999999998764 47899999999999886 9999999999999999999998764
Q ss_pred CChH
Q 011281 469 SSSF 472 (489)
Q Consensus 469 ~~~~ 472 (489)
...+
T Consensus 251 ~~~~ 254 (263)
T 2olj_A 251 QHER 254 (263)
T ss_dssp CSHH
T ss_pred ccHH
Confidence 4333
No 24
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.5e-51 Score=412.30 Aligned_cols=221 Identities=23% Similarity=0.293 Sum_probs=191.4
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC--CChHHhhcc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS--IGLHDLRSR 319 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 319 (489)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ......++.
T Consensus 4 ~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 4899999999964 359999999999999999999999999999999999999999999999999832 122345678
Q ss_pred ceEEcCCCccCcc-chhhhcCCCCC---C----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 320 LSIIPQDPTMFEG-SVHNNLDPLEE---Y----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 320 i~~v~Q~~~lf~~-ti~~Ni~~~~~---~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
||||+|++.+|+. |++||+.++.. . .++++.++++.+++.++.++.|. +||||||||++||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----------~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH-----------ELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGG-----------GSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChh-----------hCCHHHHHHHHHH
Confidence 9999999999975 99999987521 1 24568889999999887666554 4699999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 011281 392 RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQH--FSDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 468 (489)
Q Consensus 392 Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~--~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~ 468 (489)
|||+.+|++||||||||+||+.++..+++.+.+. ..+.|+|+|||+++.+.. ||||++|++|+|++.|+++|++.++
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 9999999999999999999999999999877654 248999999999999876 9999999999999999999999876
Q ss_pred CChHHHH
Q 011281 469 SSSFAQL 475 (489)
Q Consensus 469 ~~~~~~l 475 (489)
...+...
T Consensus 231 ~~~~~a~ 237 (359)
T 3fvq_A 231 ADLDAAL 237 (359)
T ss_dssp SCHHHHH
T ss_pred ccHHHHH
Confidence 6555443
No 25
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5e-51 Score=399.35 Aligned_cols=213 Identities=21% Similarity=0.280 Sum_probs=191.0
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 11 ~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 5899999999964 35999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EEcCCCcc-CccchhhhcCCCC-----CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc
Q 011281 322 IIPQDPTM-FEGSVHNNLDPLE-----EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 395 (489)
Q Consensus 322 ~v~Q~~~l-f~~ti~~Ni~~~~-----~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall 395 (489)
|++|++.+ |+.|++||+.++. ...++++.++++.+++.++.++.| .+||||||||++|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDY-----------RVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBG-----------GGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 99999987 5569999997642 233567889999999877644433 358999999999999999
Q ss_pred c------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 396 K------KSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 396 ~------~~~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
+ +|++||||||||+||+.+++.+.+.|+++. + ++|+|+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 999999999999999999999999998764 3 4699999999999885 99999999999999999999975
Q ss_pred c
Q 011281 467 N 467 (489)
Q Consensus 467 ~ 467 (489)
.
T Consensus 238 ~ 238 (266)
T 4g1u_C 238 A 238 (266)
T ss_dssp H
T ss_pred c
Confidence 4
No 26
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=7.2e-51 Score=414.12 Aligned_cols=218 Identities=20% Similarity=0.301 Sum_probs=193.6
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. ++.|+
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig 78 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 78 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999887764 46799
Q ss_pred EEcCCCccCcc-chhhhcCCC---CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
||+|++.+|+. |++||+.++ ...+ ++++.++++.+++.++.++.|. +||||||||++||||
T Consensus 79 ~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----------~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRT 147 (381)
T ss_dssp EECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----------GSCHHHHHHHHHHHH
T ss_pred EEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh-----------HCCHHHHHHHHHHHH
Confidence 99999999975 999999874 1222 3568889999999877666554 469999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 470 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~ 470 (489)
|+.+|++||||||||+||+.++..+++.|+++. .+.|+|+|||+++.+.. ||||++|++|+|++.|+++|++..+..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~ 227 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCcc
Confidence 999999999999999999999999999998764 28999999999998876 999999999999999999999987666
Q ss_pred hHHH
Q 011281 471 SFAQ 474 (489)
Q Consensus 471 ~~~~ 474 (489)
.|..
T Consensus 228 ~~v~ 231 (381)
T 3rlf_A 228 RFVA 231 (381)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 27
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=8e-51 Score=397.38 Aligned_cols=218 Identities=27% Similarity=0.376 Sum_probs=189.5
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC----------C
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS----------I 311 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~----------~ 311 (489)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. +
T Consensus 6 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4899999999964 359999999999999999999999999999999999999999999999999861 4
Q ss_pred Ch---HHhhccceEEcCCCccCcc-chhhhcCCCC----CCc----HHHHHHHHHHcCCcHH-HHhccccccchhhcCCC
Q 011281 312 GL---HDLRSRLSIIPQDPTMFEG-SVHNNLDPLE----EYA----DEEIWEALDKCQLGNE-VRKNEGKLESRVTENGE 378 (489)
Q Consensus 312 ~~---~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~~~----~~~~~~~~~~~~l~~~-i~~l~~gldt~vge~G~ 378 (489)
+. ..+|+.|+||+|++.+|+. |++||+.++. ... ++++.++++.+++.++ .++.| .
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~ 152 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-----------V 152 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------G
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc-----------c
Confidence 33 3467889999999999876 9999997621 222 3467889999999887 55544 3
Q ss_pred CCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEE
Q 011281 379 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIE 456 (489)
Q Consensus 379 ~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 456 (489)
+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 579999999999999999999999999999999999999999998764 47899999999999875 9999999999999
Q ss_pred EecChhHHhhcCCChH
Q 011281 457 EFDSPTRLLENKSSSF 472 (489)
Q Consensus 457 ~~g~~~el~~~~~~~~ 472 (489)
+.|+++++.+.+...+
T Consensus 233 ~~g~~~~~~~~~~~~~ 248 (262)
T 1b0u_A 233 EEGDPEQVFGNPQSPR 248 (262)
T ss_dssp EEECHHHHHHSCCSHH
T ss_pred EeCCHHHHHhCcchHH
Confidence 9999999987644343
No 28
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.2e-50 Score=391.35 Aligned_cols=213 Identities=22% Similarity=0.401 Sum_probs=188.4
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
+.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+|+.|
T Consensus 14 ~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence 46999999999964 359999999999999999999999999999999999999999999999999976 456678899
Q ss_pred eEEcCCCccCcc-chhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
+||||++.+|+. |++||+.++. ..+ ++++.++++.+++.++.++. ..+||||||||++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDR-----------VSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSB-----------GGGCCHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999998876 9999997631 122 24678889998887665443 3458999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
||+.+|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999999999999999998764 57899999999999987 999999999999999999999753
No 29
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.8e-50 Score=394.03 Aligned_cols=209 Identities=23% Similarity=0.256 Sum_probs=182.7
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH-Hhhccc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH-DLRSRL 320 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i 320 (489)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+|+.|
T Consensus 7 ~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999876643 457789
Q ss_pred eEEcCCCccCc-cchhhhcCCCC-----C-----------Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCC
Q 011281 321 SIIPQDPTMFE-GSVHNNLDPLE-----E-----------YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGEN 379 (489)
Q Consensus 321 ~~v~Q~~~lf~-~ti~~Ni~~~~-----~-----------~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~ 379 (489)
+||+|++.+|+ .|++||+.++. . .. .+++.++++.+++.+..++. ..+
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~ 153 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK-----------AGE 153 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-----------GGG
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC-----------chh
Confidence 99999999886 59999997631 1 11 24567788888876654333 345
Q ss_pred CCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEE
Q 011281 380 WSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEE 457 (489)
Q Consensus 380 LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 457 (489)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|++++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 89999999999999999999999999999999999999999998764 47999999999999875 99999999999999
Q ss_pred ecChhH
Q 011281 458 FDSPTR 463 (489)
Q Consensus 458 ~g~~~e 463 (489)
.|++++
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 999999
No 30
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.6e-50 Score=386.43 Aligned_cols=206 Identities=21% Similarity=0.251 Sum_probs=180.2
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---hh-
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD---LR- 317 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~r- 317 (489)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 4899999999964 35999999999999999999999999999999999999999999999999998776543 34
Q ss_pred ccceEEcCCCccCcc-chhhhcCCCC---CC----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 318 SRLSIIPQDPTMFEG-SVHNNLDPLE---EY----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~---~~----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
+.|+||+|++.+|+. |++||+.++. .. .++++.++++.+++.++.++.| .+||||||||++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgGq~qrv~ 150 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP-----------YELSGGEQQRVA 150 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 679999999998875 9999997531 11 2356788899988876544433 458999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 460 (489)
|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999998764 4889999999999886799999999999999886
No 31
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5.4e-50 Score=406.18 Aligned_cols=216 Identities=20% Similarity=0.349 Sum_probs=191.5
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ++.|+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 3899999999964 3589999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EEcCCCccCcc-chhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
||+|++.+|+. |++||+.++. ..+ ++++.++++.+++.++.++.|. +||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----------~LSgGq~QRvalArA 147 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT-----------QLSGGQQQRVALARA 147 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGG-----------GSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChh-----------hCCHHHHHHHHHHHH
Confidence 99999999975 9999998742 122 3568899999999887666654 569999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 470 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~ 470 (489)
|+.+|++||||||||+||+.+++.+++.|+++. .+.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 227 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKN 227 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 999999999999999999999999999998764 27899999999998865 999999999999999999999987655
Q ss_pred hH
Q 011281 471 SF 472 (489)
Q Consensus 471 ~~ 472 (489)
.|
T Consensus 228 ~~ 229 (359)
T 2yyz_A 228 MF 229 (359)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 32
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6e-50 Score=392.17 Aligned_cols=211 Identities=24% Similarity=0.301 Sum_probs=186.8
Q ss_pred EEEEEEEEEECCCC---CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 243 VDIHGLQVRYAPHL---PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 243 i~~~~v~~~y~~~~---~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
|+++||+++|+.+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .+|+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 78999999997222 3599999999999999999999999999999999999999999999999998642 67888
Q ss_pred ceEEcCCC--ccCccchhhhcCCCC------CCcHHHHHHHHHHcCCc--HHHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 320 LSIIPQDP--TMFEGSVHNNLDPLE------EYADEEIWEALDKCQLG--NEVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 320 i~~v~Q~~--~lf~~ti~~Ni~~~~------~~~~~~~~~~~~~~~l~--~~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
|+||+|+| .++..|++||+.++. ....+++.++++.+++. ++.++.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999997 456789999997642 12356789999999998 7766555 357999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
|||||+++|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998764 58899999999999886 999999999999999999999865
No 33
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.3e-50 Score=386.31 Aligned_cols=208 Identities=25% Similarity=0.333 Sum_probs=183.5
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++||+++|++ +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..|+.|+|
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999953 59999999999 999999999999999999999999999999999999987543 35778999
Q ss_pred EcCCCccCcc-chhhhcCCCCCC-----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 323 IPQDPTMFEG-SVHNNLDPLEEY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~~~~-----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
|||++.+|+. |++||+.++... .++++.++++.+++.++.++.| .+||||||||++|||||++
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----------GGSCHHHHHHHHHHHHHTT
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 9999999886 999999875321 2456788899988876654443 3579999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENK 468 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~ 468 (489)
+|+++||||||++||+.+++.+++.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999998764 27899999999998765 9999999999999999999998764
No 34
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6.9e-50 Score=404.48 Aligned_cols=218 Identities=25% Similarity=0.404 Sum_probs=191.8
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..|+++||+++|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.|
T Consensus 13 ~~l~~~~l~~~y~g~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 89 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG-ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNV 89 (355)
T ss_dssp EEEEEEEEEECCTTS-TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSE
T ss_pred ceEEEEEEEEEEcCC-CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcE
Confidence 469999999999322 358999999999999999999999999999999999999999999999999987654 46789
Q ss_pred eEEcCCCccCcc-chhhhcCCC---CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 321 SIIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 321 ~~v~Q~~~lf~~-ti~~Ni~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
+||+|++.+|+. |++||+.++ ...+ ++++.++++.+++.++.++.|. +||||||||++|||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----------~LSGGq~QRvalAr 158 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH-----------ELSGGQQQRVALAR 158 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----------GSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcc-----------cCCHHHHHHHHHHH
Confidence 999999999975 999999763 1222 3568889999999887666554 56999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKS 469 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~ 469 (489)
||+.+|++||||||||+||+.+++.+++.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++++.
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 238 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999987642 7899999999999876 99999999999999999999998755
Q ss_pred ChH
Q 011281 470 SSF 472 (489)
Q Consensus 470 ~~~ 472 (489)
..|
T Consensus 239 ~~~ 241 (355)
T 1z47_A 239 TLF 241 (355)
T ss_dssp SHH
T ss_pred chH
Confidence 444
No 35
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.7e-50 Score=397.38 Aligned_cols=209 Identities=22% Similarity=0.351 Sum_probs=177.7
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
+.++++||+|.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .|
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 469999999864 2589999999999999999999999999999999999999999999998 49
Q ss_pred eEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCE
Q 011281 321 SIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV 400 (489)
Q Consensus 321 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~i 400 (489)
+||||++.+|++|++||+. +......++.++++.+++.+++..+|.++++.+++.+.+||||||||++|||||+++|++
T Consensus 102 ~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 9999999999999999997 433345566778889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH-HHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 011281 401 LVLDEATASVDTATDNLIQHTL-GQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 401 lllDEpts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
+|||||||+||+.+++.+.+.+ .+..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 181 llLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 248 (290)
T 2bbs_A 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248 (290)
T ss_dssp EEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh
Confidence 9999999999999999999874 444458899999999999888999999999999999999999764
No 36
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.6e-50 Score=406.50 Aligned_cols=216 Identities=22% Similarity=0.343 Sum_probs=190.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ++.|+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 3899999999964 3599999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EEcCCCccCcc-chhhhcCCC---CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFEG-SVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
||+|++.+|+. |++||+.++ .... ++++.++++.+++.++.++.|. +||||||||++||||
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----------~LSGGq~QRvalArA 147 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARA 147 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----------GSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChh-----------hCCHHHHHHHHHHHH
Confidence 99999999975 999999763 1222 3568889999999877666554 579999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 470 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~ 470 (489)
|+.+|++||||||||+||+.+++.+++.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~ 227 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY 227 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999987642 7899999999998865 999999999999999999999987655
Q ss_pred hH
Q 011281 471 SF 472 (489)
Q Consensus 471 ~~ 472 (489)
.|
T Consensus 228 ~~ 229 (362)
T 2it1_A 228 KF 229 (362)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 37
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.3e-49 Score=405.15 Aligned_cols=216 Identities=22% Similarity=0.337 Sum_probs=185.9
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ++.|+
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EEcCCCccCcc-chhhhcCCCCC---Cc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLEE---YA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~~---~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
||+|++.+|+. |++||+.++.. .+ ++++.++++.+++.++.++.| .+||||||||++||||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArA 155 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999875 99999987521 22 346788999999887766555 4679999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCC
Q 011281 394 LLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSS 470 (489)
Q Consensus 394 ll~~~~illlDEpts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~ 470 (489)
|+.+|++||||||||+||+.+++.+++.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|++++++.++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 235 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 235 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCccc
Confidence 9999999999999999999999999999987642 7899999999998865 999999999999999999999987655
Q ss_pred hH
Q 011281 471 SF 472 (489)
Q Consensus 471 ~~ 472 (489)
.|
T Consensus 236 ~~ 237 (372)
T 1v43_A 236 VF 237 (372)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 38
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.1e-50 Score=406.43 Aligned_cols=218 Identities=19% Similarity=0.288 Sum_probs=190.9
Q ss_pred cEEEEEEEEEECCCCCc--ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC---hHHh
Q 011281 242 EVDIHGLQVRYAPHLPL--VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG---LHDL 316 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~--~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~ 316 (489)
.|+++||+++|++ .. +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ....
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 3899999999964 35 899999999999999999999999999999999999999999999999986521 2335
Q ss_pred hccceEEcCCCccCcc-chhhhcCCCC---CCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH
Q 011281 317 RSRLSIIPQDPTMFEG-SVHNNLDPLE---EYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388 (489)
Q Consensus 317 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~---~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl 388 (489)
++.|+||+|++.+|+. |++||+.++. ..+ ++++.++++.+++.++.++.|. +||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-----------~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR-----------ELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----------GSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChh-----------hCCHHHHHHH
Confidence 7889999999999975 9999997742 122 3568889999999887666554 5799999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 389 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 389 ~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
+|||||+.+|++||||||||+||+.+++.+++.|+++. .+.|+|+|||+++.+.. ||||++|++|+|++.|+++|++
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998764 27899999999998876 9999999999999999999999
Q ss_pred hcCCChH
Q 011281 466 ENKSSSF 472 (489)
Q Consensus 466 ~~~~~~~ 472 (489)
+++...|
T Consensus 230 ~~p~~~~ 236 (353)
T 1oxx_K 230 DNPVSIQ 236 (353)
T ss_dssp HSCSSHH
T ss_pred hCcccHH
Confidence 8765544
No 39
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.1e-49 Score=402.56 Aligned_cols=214 Identities=22% Similarity=0.340 Sum_probs=190.1
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
|+++||+++|++ . +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.|+|
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 689999999964 3 8999999999999999999999999999999999999999999999999987543 4778999
Q ss_pred EcCCCccCcc-chhhhcCCCC----CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 323 IPQDPTMFEG-SVHNNLDPLE----EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 323 v~Q~~~lf~~-ti~~Ni~~~~----~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
|+|++.+|+. |++||+.++. ...++++.++++.+++.++.++.|. +||||||||++|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-----------~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL-----------TLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGG-----------GSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChh-----------hCCHHHHHHHHHHHHHHcC
Confidence 9999999976 9999997631 1123788999999999877666553 5799999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCCChH
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLENKSSSF 472 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~~~~~~~ 472 (489)
|++||||||||+||+.+++.+++.|+++. .+.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++++...|
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 99999999999999999999999998764 37899999999998765 99999999999999999999998765444
No 40
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.7e-50 Score=394.93 Aligned_cols=213 Identities=20% Similarity=0.240 Sum_probs=185.5
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC--CCChHHhhcc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS--SIGLHDLRSR 319 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 319 (489)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 21 ~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 21 LIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred eEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 5999999999964 35999999999999999999999999999999999999999999999999987 6777778899
Q ss_pred ceEEcCCCcc-Ccc--chhhhcCCCCC--------Cc---HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHH
Q 011281 320 LSIIPQDPTM-FEG--SVHNNLDPLEE--------YA---DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQR 385 (489)
Q Consensus 320 i~~v~Q~~~l-f~~--ti~~Ni~~~~~--------~~---~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~ 385 (489)
|+||+|++.+ |.. |++||+.++.. .. .+++.++++.+++.++.++. ..+||||||
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGqk 167 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY-----------IGYLSTGEK 167 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB-----------GGGSCHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHH
Confidence 9999999875 444 99999976421 12 24577888888887654433 345899999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceE--EEEecCchhhhh-cCEEEEEeCCEEEEecCh
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTV--ITIAHRITSVID-SDMVLLLSYGLIEEFDSP 461 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~--i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 461 (489)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+ |+|||+++.+.. ||+|++|++|++++.|++
T Consensus 168 qRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 247 (279)
T 2ihy_A 168 QRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247 (279)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999998764 37899 999999999865 999999999999999999
Q ss_pred hHHhhc
Q 011281 462 TRLLEN 467 (489)
Q Consensus 462 ~el~~~ 467 (489)
+++.+.
T Consensus 248 ~~~~~~ 253 (279)
T 2ihy_A 248 EDILTS 253 (279)
T ss_dssp HHHCSH
T ss_pred HHHhcc
Confidence 998753
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3e-49 Score=382.95 Aligned_cols=207 Identities=20% Similarity=0.253 Sum_probs=186.6
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.++++||+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|+++...+...+|+.++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 3789999976 3899999999999999999999999999999999999999 99999999998888888899999
Q ss_pred EEcCCCccCcc-chhhhcCCCCC--CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 322 IIPQDPTMFEG-SVHNNLDPLEE--YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
||+|++.+|.. |++||+.++.. ..++++.++++.+++.++.++. ..+||||||||++|||||+++|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS-----------TNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSB-----------GGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHHcCC
Confidence 99999998875 99999987531 2367889999999987765433 3468999999999999999999
Q ss_pred C-------EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 011281 399 K-------VLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVI-DSDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 399 ~-------illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
+ +|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+. .||++++|++|++++.|+++++.+
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9 999999999999999999999998764 5889999999999986 499999999999999999999875
No 42
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.4e-49 Score=403.87 Aligned_cols=216 Identities=19% Similarity=0.327 Sum_probs=189.6
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC------CChHH
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS------IGLHD 315 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~------~~~~~ 315 (489)
.|+++||+++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 3899999999964 359999999999999999999999999999999999999999999999999865 443
Q ss_pred hhccceEEcCCCccCc-cchhhhcCCC---CCCc----HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 316 LRSRLSIIPQDPTMFE-GSVHNNLDPL---EEYA----DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 316 ~r~~i~~v~Q~~~lf~-~ti~~Ni~~~---~~~~----~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
.++.|+||+|++.+|+ .|++||+.++ .... ++++.++++.+++.++.++.|. +||||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----------~LSGGq~QR 147 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR-----------ELSGGQRQR 147 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----------GSCHHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcc-----------cCCHHHHHH
Confidence 3678999999999987 4999999763 1222 3467889999998877665553 579999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el 464 (489)
++|||||+.+|++||||||||+||+.+++.+++.|+++. .+.|+|+|||+++.+.. ||||++|++|+|++.|+++|+
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998764 27899999999999875 999999999999999999999
Q ss_pred hhcCCChH
Q 011281 465 LENKSSSF 472 (489)
Q Consensus 465 ~~~~~~~~ 472 (489)
++++...|
T Consensus 228 ~~~p~~~~ 235 (372)
T 1g29_1 228 YDKPANTF 235 (372)
T ss_dssp HHSCSBHH
T ss_pred HhCcccHH
Confidence 98765555
No 43
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.5e-49 Score=383.36 Aligned_cols=209 Identities=20% Similarity=0.242 Sum_probs=175.3
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCChHHh-hc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGLIAIDGIDISSIGLHDL-RS 318 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 318 (489)
.|+++||+|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.... +.
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 3789999999964 3599999999999999999999999999999999999 89999999999999988776655 45
Q ss_pred cceEEcCCCccCcc-chhhhcCCCC----C--Cc----HHHHHHHHHHcCCc-HHHHhccccccchhhcCCCC-CCchHH
Q 011281 319 RLSIIPQDPTMFEG-SVHNNLDPLE----E--YA----DEEIWEALDKCQLG-NEVRKNEGKLESRVTENGEN-WSMGQR 385 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~-ti~~Ni~~~~----~--~~----~~~~~~~~~~~~l~-~~i~~l~~gldt~vge~G~~-LSgGq~ 385 (489)
.++||+|+|.+|++ |++||+.+.. . .. .+++.++++.+++. +..++.| .+ ||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~~~LSgGqk 149 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----------NEGFSGGEK 149 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----------TCC----HH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----------ccCCCHHHH
Confidence 69999999999886 9999996521 1 11 34567788888773 4333222 34 899999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh--cCEEEEEeCCEEEEecChh
Q 011281 386 QLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEFDSPT 462 (489)
Q Consensus 386 Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~ 462 (489)
||++|||||+++|+++|||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999998874 47899999999999886 5999999999999999987
Q ss_pred H
Q 011281 463 R 463 (489)
Q Consensus 463 e 463 (489)
.
T Consensus 230 ~ 230 (250)
T 2d2e_A 230 L 230 (250)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.6e-48 Score=379.65 Aligned_cols=213 Identities=22% Similarity=0.256 Sum_probs=180.5
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCceEEECCEeCCCCChHHh-hc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI--VEPTAGLIAIDGIDISSIGLHDL-RS 318 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 318 (489)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +.
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 5999999999964 3599999999999999999999999999999999999 57899999999999987776655 45
Q ss_pred cceEEcCCCccCcc-chhhhcCCCC----------CCc----HHHHHHHHHHcCCcH-HHHhccccccchhhcCCCCCCc
Q 011281 319 RLSIIPQDPTMFEG-SVHNNLDPLE----------EYA----DEEIWEALDKCQLGN-EVRKNEGKLESRVTENGENWSM 382 (489)
Q Consensus 319 ~i~~v~Q~~~lf~~-ti~~Ni~~~~----------~~~----~~~~~~~~~~~~l~~-~i~~l~~gldt~vge~G~~LSg 382 (489)
.|+||+|++.+|+. |+++|+.+.. ..+ ++++.++++.+++.+ ..++. + +.+|||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-------~---~~~LSg 167 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS-------V---NVGFSG 167 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB-------T---TTTCCH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-------c---ccCCCH
Confidence 69999999999876 8999885310 112 235677788877742 22211 1 124999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh--cCEEEEEeCCEEEEec
Q 011281 383 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID--SDMVLLLSYGLIEEFD 459 (489)
Q Consensus 383 Gq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g 459 (489)
|||||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g 247 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999998864 47899999999999875 8999999999999999
Q ss_pred ChhHHhh
Q 011281 460 SPTRLLE 466 (489)
Q Consensus 460 ~~~el~~ 466 (489)
+++++..
T Consensus 248 ~~~~~~~ 254 (267)
T 2zu0_C 248 DFTLVKQ 254 (267)
T ss_dssp CTTHHHH
T ss_pred CHHHHhh
Confidence 9998754
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.5e-48 Score=378.26 Aligned_cols=206 Identities=23% Similarity=0.316 Sum_probs=181.3
Q ss_pred EEEEEEEEEECCC--CCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 243 VDIHGLQVRYAPH--LPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 243 i~~~~v~~~y~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
|+++||+++|++. ..++|+|+||+++ ||+++|+||||||||||+++|+|++ |++|+|.++|+++... .. |+.+
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 1359999999999 9999999999999999999999999 9999999999998654 33 7789
Q ss_pred e-EEcCCCccCccchhhhcCCCC---CCcHHHHHHHHHHcCCc-HHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc
Q 011281 321 S-IIPQDPTMFEGSVHNNLDPLE---EYADEEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 395 (489)
Q Consensus 321 ~-~v~Q~~~lf~~ti~~Ni~~~~---~~~~~~~~~~~~~~~l~-~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall 395 (489)
+ ||||++.+ ..|++||+.++. ...++++.++++.+++. +...+ ...+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRR-----------KLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGS-----------BGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcC-----------ChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 889999997632 34567888999998886 54333 34568999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cC-EEEEEeCCEEEEecChhHHhhc
Q 011281 396 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SD-MVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 396 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d-~i~~l~~G~i~~~g~~~el~~~ 467 (489)
++|+++||||||++||+.+++.+.+.|+++.+ |+|+|||+++.+.. || ++++|++|++++.|+++++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999987644 99999999999865 99 9999999999999999999853
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=8.5e-48 Score=373.93 Aligned_cols=200 Identities=25% Similarity=0.340 Sum_probs=174.8
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+++|+++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|. +++.|+
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 48999999999622 3599999999999999999999999999999999999999999998 356799
Q ss_pred EEcCCCccC-ccchhhhcCCCCC---------C--cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHH
Q 011281 322 IIPQDPTMF-EGSVHNNLDPLEE---------Y--ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVC 389 (489)
Q Consensus 322 ~v~Q~~~lf-~~ti~~Ni~~~~~---------~--~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~ 389 (489)
||||++.+| ..|++||+.++.. . .++++.++++.+++.++.++. ..+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----------FTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----------GGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----------hhhCCHHHHHHHH
Confidence 999999987 4699999976421 1 135678899999987765443 3468999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 390 LARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 390 laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
|||||+++|++|||||||++||+.+++.+.+.|.++. + ++|+|+|||+++.+.. ||+|++|++|+ ++.|+++++.+
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 9999999999999999999999999999999998764 3 7899999999999865 99999999999 99999999875
Q ss_pred c
Q 011281 467 N 467 (489)
Q Consensus 467 ~ 467 (489)
.
T Consensus 218 ~ 218 (253)
T 2nq2_C 218 S 218 (253)
T ss_dssp H
T ss_pred c
Confidence 3
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.1e-47 Score=358.95 Aligned_cols=193 Identities=23% Similarity=0.354 Sum_probs=167.2
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+++|++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.|+
T Consensus 10 ~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~ 81 (214)
T 1sgw_A 10 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 81 (214)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred eEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEE
Confidence 5999999999964 5999999999999999999999999999999999999999999999999885 3678899
Q ss_pred EEcCCCccCcc-chhhhcCCC----C-CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc
Q 011281 322 IIPQDPTMFEG-SVHNNLDPL----E-EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 395 (489)
Q Consensus 322 ~v~Q~~~lf~~-ti~~Ni~~~----~-~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall 395 (489)
||||++.+|+. |++||+.++ . ...++++.++++.+++.+. . ....+||||||||++|||||+
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~-----------~~~~~LSgGqkqrv~laraL~ 149 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-K-----------KKLGELSQGTIRRVQLASTLL 149 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-T-----------SBGGGSCHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-C-----------CChhhCCHHHHHHHHHHHHHH
Confidence 99999999886 999999753 1 2236778888988887654 3 234568999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEE
Q 011281 396 KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLI 455 (489)
Q Consensus 396 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 455 (489)
++|+++||||||++||+.+.+.+.+.|.+.. +++|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 9999999999999999999999999998764 47899999999999988 66665 556666
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-38 Score=340.57 Aligned_cols=199 Identities=23% Similarity=0.288 Sum_probs=168.2
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..++++|+++.|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.+ +..|
T Consensus 286 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred eEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 35899999999964 3689999999999999999999999999999999999999999985 2369
Q ss_pred eEEcCCCcc-CccchhhhcCCC--CC-CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 321 SIIPQDPTM-FEGSVHNNLDPL--EE-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 321 ~~v~Q~~~l-f~~ti~~Ni~~~--~~-~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
+||||++.. +..|+.+|+... .. ...+++.++++.+++.+..++ ...+||||||||++|||||+.
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDR-----------EVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTS-----------BGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcC-----------ChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 456999887532 11 123456667777766544332 234589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLIEEFDSPTRLLE 466 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~el~~ 466 (489)
+|++|||||||++||+.+...+.+.|+++. .+.|+|+|||+++.+.. ||||++|++ |+++..|+++++..
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999998764 48899999999999986 999999986 78888999998875
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.9e-38 Score=342.84 Aligned_cols=199 Identities=24% Similarity=0.300 Sum_probs=169.6
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..++++|+++.|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.+ +..+
T Consensus 356 ~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred eEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 35899999999964 3689999999999999999999999999999999999999999976 2369
Q ss_pred eEEcCCCcc-CccchhhhcCCC-C-C-CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 321 SIIPQDPTM-FEGSVHNNLDPL-E-E-YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 321 ~~v~Q~~~l-f~~ti~~Ni~~~-~-~-~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
+|+||++.. ++.|+.+|+... . . ...+.+.++++.+++.+..++. ..+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRN-----------VEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSB-----------GGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHHHHHHHHh
Confidence 999999876 456999998542 1 1 1234567778887776543332 24589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLIEEFDSPTRLLE 466 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~el~~ 466 (489)
+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++...|++++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999998763 58899999999999986 999999986 88888999998875
No 50
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1e-37 Score=348.33 Aligned_cols=197 Identities=21% Similarity=0.248 Sum_probs=153.6
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|+++||+|+|++...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 59999999999754346899999999999999999999999999999999999999999999862 0245
Q ss_pred EEcCCCc---------------------------------------------------------------------cC--
Q 011281 322 IIPQDPT---------------------------------------------------------------------MF-- 330 (489)
Q Consensus 322 ~v~Q~~~---------------------------------------------------------------------lf-- 330 (489)
|++|++. .+
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 5555431 00
Q ss_pred ccchhhhcCCCC------------------------------------------CCcHHHHHHHHHHcCCcHHHHhcccc
Q 011281 331 EGSVHNNLDPLE------------------------------------------EYADEEIWEALDKCQLGNEVRKNEGK 368 (489)
Q Consensus 331 ~~ti~~Ni~~~~------------------------------------------~~~~~~~~~~~~~~~l~~~i~~l~~g 368 (489)
..|++||+.+.. ....+++.+.++.+|+.+...
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~----- 894 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV----- 894 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH-----
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh-----
Confidence 012344443321 112455677777777754320
Q ss_pred ccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEE
Q 011281 369 LESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMV 447 (489)
Q Consensus 369 ldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i 447 (489)
......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. ||+|
T Consensus 895 ----~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrV 968 (986)
T 2iw3_A 895 ----SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEV 968 (986)
T ss_dssp ----HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEE
T ss_pred ----cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEE
Confidence 01223458999999999999999999999999999999999999999999765 5799999999999876 9999
Q ss_pred EEEeCCEEEEecC
Q 011281 448 LLLSYGLIEEFDS 460 (489)
Q Consensus 448 ~~l~~G~i~~~g~ 460 (489)
++|++|+++..|+
T Consensus 969 ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 969 WAVKDGRMTPSGH 981 (986)
T ss_dssp ECCBTTBCCC---
T ss_pred EEEECCEEEEeCC
Confidence 9999999988765
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.3e-37 Score=332.25 Aligned_cols=200 Identities=19% Similarity=0.226 Sum_probs=166.9
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..++++|+++.|++ ..+.+.||++++||+++|+||||||||||+++|+|+++|++|+|.+++ ..+
T Consensus 268 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred ceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 46899999999964 368888999999999999999999999999999999999999998765 258
Q ss_pred eEEcCCCcc-CccchhhhcCCCC-C---CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc
Q 011281 321 SIIPQDPTM-FEGSVHNNLDPLE-E---YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 395 (489)
Q Consensus 321 ~~v~Q~~~l-f~~ti~~Ni~~~~-~---~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall 395 (489)
+|+||++.. +..|+++|+.... . .....+.++++.+++.+..++. ..+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESN-----------VNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSB-----------GGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHHHHHHH
Confidence 999999865 4679999985421 1 2234566777777776543333 3458999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 011281 396 KKSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLIEEFDSPTRLLE 466 (489)
Q Consensus 396 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~el~~ 466 (489)
++|++|||||||++||+.+...+++.|+++. .++|+|+|||+++.+.. ||||++|++ |.+...+++.++..
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 9999999999999999999999999998764 47899999999999987 999999987 56666777766543
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.2e-37 Score=331.69 Aligned_cols=193 Identities=22% Similarity=0.286 Sum_probs=156.6
Q ss_pred EEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE---------EECCEeCCCCChH--
Q 011281 246 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI---------AIDGIDISSIGLH-- 314 (489)
Q Consensus 246 ~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i---------~~~g~~~~~~~~~-- 314 (489)
+||+++|++. ..+|+++| ++++||+++|+||||||||||+++|+|+++|++|++ .++|.++..+...
T Consensus 95 ~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 8999999653 24899999 999999999999999999999999999999999996 4566544322111
Q ss_pred HhhccceEEcCCCc----cCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 315 DLRSRLSIIPQDPT----MFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~----lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
..+..+++++|... ++.+|++||+.... ..+++.++++.+++.+..++.+ .+||||||||++|
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~--~~~~~~~~L~~lgL~~~~~~~~-----------~~LSGGekQRvaI 239 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD--EVGKFEEVVKELELENVLDREL-----------HQLSGGELQRVAI 239 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC--CSSCHHHHHHHTTCTTGGGSBG-----------GGCCHHHHHHHHH
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhH--HHHHHHHHHHHcCCCchhCCCh-----------hhCCHHHHHHHHH
Confidence 11345889988753 34569999985421 1345778899998876544433 3479999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCC
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYG 453 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G 453 (489)
||||+++|++||||||||+||+.+...+.+.|+++. .+.|+|+|||+++.+.. ||||++|+++
T Consensus 240 AraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 240 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 999999999999999999999999999999998764 48999999999999876 9999999875
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=326.95 Aligned_cols=197 Identities=18% Similarity=0.237 Sum_probs=165.5
Q ss_pred EEEEEEECCCCCcceeeeeEEeeCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 246 HGLQVRYAPHLPLVLRGLTCTFLGG-----MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 246 ~~v~~~y~~~~~~~l~~i~l~i~~g-----~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
++++|+|++.. .+++++||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~~-~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSLK-KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCEE-EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCcc-cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 67788997532 4789999999999 7899999999999999999999999999973 11 2369
Q ss_pred eEEcCCCc-cCccchhhhcCC--C-CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 321 SIIPQDPT-MFEGSVHNNLDP--L-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 321 ~~v~Q~~~-lf~~ti~~Ni~~--~-~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
+|+||++. .|..|+++|+.. . .....+...++++..++.+..++ ...+||||||||++|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----------~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQ-----------EVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSS-----------BSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-----------ChhhCCHHHHHHHHHHHHHHh
Confidence 99999976 467899998742 1 12345566778888877654333 235689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeC--CEEEEecChhHHhhc
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSY--GLIEEFDSPTRLLEN 467 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~el~~~ 467 (489)
+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |+++..|+++++++.
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999999999999998753 48999999999999987 999999997 899999999999875
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.3e-37 Score=328.15 Aligned_cols=195 Identities=22% Similarity=0.284 Sum_probs=154.4
Q ss_pred EE-EEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE---------EECCEeCCCCCh
Q 011281 244 DI-HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI---------AIDGIDISSIGL 313 (489)
Q Consensus 244 ~~-~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i---------~~~g~~~~~~~~ 313 (489)
++ +||+++|++. ..+++|+| +|++||+++|+||||||||||+|+|+|+++|++|++ .++|.++.....
T Consensus 22 ~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 22 QLEEDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp --CCCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hHhcCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 44 6899999653 24899999 999999999999999999999999999999999996 356654432111
Q ss_pred HH--hhccceEEcCCCccC----ccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 314 HD--LRSRLSIIPQDPTMF----EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 314 ~~--~r~~i~~v~Q~~~lf----~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
.. .+..+++++|+...+ .+|+++|+.... ..+++.++++.+++.+..++. + .+||||||||
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~~~~-------~----~~LSgGekQR 166 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD--ETGKLEEVVKALELENVLERE-------I----QHLSGGELQR 166 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTTTTSB-------G----GGCCHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--HHHHHHHHHHHcCCChhhhCC-------h----hhCCHHHHHH
Confidence 11 124588999975443 358888874311 124577889999886543332 2 3589999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCC
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYG 453 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G 453 (489)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .+.|+|+|||+++.+.. ||||++|++|
T Consensus 167 v~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 167 VAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999998764 48899999999999887 9999999865
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7e-36 Score=328.58 Aligned_cols=206 Identities=21% Similarity=0.262 Sum_probs=140.0
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCcHHHHH---------------------HHHhcCCCCC-------CceEEECCEeC
Q 011281 257 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLI---------------------QTLFRIVEPT-------AGLIAIDGIDI 308 (489)
Q Consensus 257 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~---------------------~~l~g~~~~~-------~G~i~~~g~~~ 308 (489)
..+|+||||+|++||+++|+||||||||||+ +++.|+..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999998 8999999998 55566666554
Q ss_pred CCCChHHhhccceEEcCCCccC--------------------ccchhhhcCCCCCC--c--HHH-----------HHHHH
Q 011281 309 SSIGLHDLRSRLSIIPQDPTMF--------------------EGSVHNNLDPLEEY--A--DEE-----------IWEAL 353 (489)
Q Consensus 309 ~~~~~~~~r~~i~~v~Q~~~lf--------------------~~ti~~Ni~~~~~~--~--~~~-----------~~~~~ 353 (489)
.. ..++.+++|+|.+.++ ..|++||+.+.... . +.+ ..+.+
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 32 2345677777755432 34899998764211 0 000 01124
Q ss_pred HHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCce
Q 011281 354 DKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATASVDTATDNLIQHTLGQHF-SDCT 430 (489)
Q Consensus 354 ~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~--illlDEpts~lD~~~~~~i~~~l~~~~-~~~t 430 (489)
+.+++.+.. ++ ....+||||||||++|||||+.+|+ +|||||||++||+.+...+.+.|+++. ++.|
T Consensus 187 ~~~gL~~~~------~~----~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~t 256 (670)
T 3ux8_A 187 QNVGLDYLT------LS----RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNT 256 (670)
T ss_dssp HHTTCTTCC------TT----CBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCE
T ss_pred HHcCCchhh------hc----CCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCE
Confidence 444443210 12 2234689999999999999999998 999999999999999999999998764 5799
Q ss_pred EEEEecCchhhhhcCEEEEE------eCCEEEEecChhHHhhcCCChHHHHH
Q 011281 431 VITIAHRITSVIDSDMVLLL------SYGLIEEFDSPTRLLENKSSSFAQLV 476 (489)
Q Consensus 431 ~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~el~~~~~~~~~~l~ 476 (489)
+|+|||+++.+..||+|++| ++|++++.|+++++.+.+...+..++
T Consensus 257 vi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 308 (670)
T 3ux8_A 257 LIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYL 308 (670)
T ss_dssp EEEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHHH
T ss_pred EEEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHHh
Confidence 99999999998889999999 89999999999999986544444333
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=8.3e-35 Score=324.99 Aligned_cols=196 Identities=21% Similarity=0.257 Sum_probs=163.8
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 320 (489)
..+...|++++|++ ..+|+|+||++++|++++|+||||||||||+++|+| |+| +|.+... +..+
T Consensus 434 ~~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp CEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred ceeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 45888899999964 359999999999999999999999999999999996 554 4543311 1237
Q ss_pred eEEcCCC-ccCc-cchhhhcCCC-CCCcHHHHHHHHHHcCCc-HHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 321 SIIPQDP-TMFE-GSVHNNLDPL-EEYADEEIWEALDKCQLG-NEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 321 ~~v~Q~~-~lf~-~ti~~Ni~~~-~~~~~~~~~~~~~~~~l~-~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
+|++|++ .++. .|+.+|+.+. ... ++++.++++.+|+. +..++.+ .+||||||||++|||||+.
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~-----------~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPI-----------SALSGGWKMKLALARAVLR 565 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBG-----------GGCCHHHHHHHHHHHHHHT
T ss_pred EEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCc-----------ccCCHHHHHHHHHHHHHhc
Confidence 8999986 4444 5999999641 112 77899999999995 4444333 3479999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCEEE-EecChhHHhh
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGLIE-EFDSPTRLLE 466 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~el~~ 466 (489)
+|++|||||||++||+.+.+.+.+.|++ .+.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++..
T Consensus 566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 566 NADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999999987 58999999999999986 9999999999997 5899999875
No 57
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1.5e-40 Score=329.58 Aligned_cols=214 Identities=14% Similarity=0.124 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCC-CccEEEEEEEEEECCCCCcceeeeeEEeeCCCE
Q 011281 194 QASLISKLCNLENRIISVERILQYMCIPNEPPLVIEASRPNCSWPS-QGEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMK 272 (489)
Q Consensus 194 ~~~~~~~~~~l~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~ 272 (489)
+..+...+..++++..+.+|+.++++.+.+.. . ....++. .+.|+++||+|+|+ .++|+++||+|++|++
T Consensus 58 v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~---~---~~~~~~~~~~~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~ 128 (305)
T 2v9p_A 58 VKDCATMVRHYLRAETQALSMPAYIKARCKLA---T---GEGSWKSILTFFNYQNIELITF---INALKLWLKGIPKKNC 128 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHC---C---SSCCTHHHHHHHHHTTCCHHHH---HHHHHHHHHTCTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---C---CCCcccccCCeEEEEEEEEEcC---hhhhccceEEecCCCE
Confidence 33455556677888899999999886432211 0 0001111 23489999999996 3599999999999999
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhh-hcCCCCCCcHHHHHH
Q 011281 273 TGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN-NLDPLEEYADEEIWE 351 (489)
Q Consensus 273 ~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~-Ni~~~~~~~~~~~~~ 351 (489)
++|+||||||||||+++|+|++ +|+| +++++|++++|.+|+++ |+.+.++.++ .
T Consensus 129 vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~~~~~~-~--- 183 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALVDDATH-A--- 183 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEEEEECH-H---
T ss_pred EEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccCccccH-H---
Confidence 9999999999999999999999 7988 35789999999999997 9988654443 2
Q ss_pred HHHHcCCcHHHHh-ccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCce
Q 011281 352 ALDKCQLGNEVRK-NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCT 430 (489)
Q Consensus 352 ~~~~~~l~~~i~~-l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t 430 (489)
++++++. +|+|+| |.+|||||||| |||++++|+||| ||+||+.+++.+..
T Consensus 184 ------~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------- 234 (305)
T 2v9p_A 184 ------CWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------- 234 (305)
T ss_dssp ------HHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----------
T ss_pred ------HHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----------
Confidence 2356666 888987 78999999999 999999999999 99999999888752
Q ss_pred EEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCCChHHHHHHH
Q 011281 431 VITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLENKSSSFAQLVAE 478 (489)
Q Consensus 431 ~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~l~~~ 478 (489)
+|||++.+..||+| +|++|+|++.|+|+++ ++.|++++..
T Consensus 235 ---ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~ 274 (305)
T 2v9p_A 235 ---LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGR 274 (305)
T ss_dssp ---GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTT
T ss_pred ---HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHH
Confidence 39999999999999 9999999999999999 2567777653
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.3e-36 Score=328.43 Aligned_cols=209 Identities=23% Similarity=0.286 Sum_probs=152.0
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHh----------------------cCCCCCCceEEECCEeCCCCChH
Q 011281 257 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF----------------------RIVEPTAGLIAIDGIDISSIGLH 314 (489)
Q Consensus 257 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~----------------------g~~~~~~G~i~~~g~~~~~~~~~ 314 (489)
..+|+||||+|++||+++|+||||||||||+++|+ |+. +.+|.|.+++.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCCc
Confidence 35899999999999999999999999999998764 333 3456888998887654321
Q ss_pred Hhhc-----------------------------------------cceEEcCCCccC-----------------------
Q 011281 315 DLRS-----------------------------------------RLSIIPQDPTMF----------------------- 330 (489)
Q Consensus 315 ~~r~-----------------------------------------~i~~v~Q~~~lf----------------------- 330 (489)
.... ..|+++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1110 123333332222
Q ss_pred ----------ccchhhhcCCCCCCc-HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC-
Q 011281 331 ----------EGSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS- 398 (489)
Q Consensus 331 ----------~~ti~~Ni~~~~~~~-~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~- 398 (489)
..|++||+.+..... .++..+.+..+++.+ ...+....+||||||||++|||||+++|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGY----------MKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTT----------SBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCch----------hhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 236777765543222 234455566665532 1223455679999999999999999887
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEE------eCCEEEEecChhHHhhcCC
Q 011281 399 --KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGLIEEFDSPTRLLENKS 469 (489)
Q Consensus 399 --~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~el~~~~~ 469 (489)
++|||||||++||+.+.+.+++.|+++. .++|+|+|||+++.+..||||++| ++|+|++.|+++|+.+.+.
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~ 643 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKE 643 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCc
Confidence 5999999999999999999999998764 589999999999999889999999 8999999999999987644
Q ss_pred ChHHHHH
Q 011281 470 SSFAQLV 476 (489)
Q Consensus 470 ~~~~~l~ 476 (489)
.....++
T Consensus 644 ~~~~~~~ 650 (670)
T 3ux8_A 644 SHTGRYL 650 (670)
T ss_dssp CHHHHHH
T ss_pred cHHHHHH
Confidence 4333333
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-34 Score=320.89 Aligned_cols=208 Identities=22% Similarity=0.295 Sum_probs=151.8
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHH---------HHHhcCCCCC------Cc------eEEECCEeCCCCCh---
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLI---------QTLFRIVEPT------AG------LIAIDGIDISSIGL--- 313 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~---------~~l~g~~~~~------~G------~i~~~g~~~~~~~~--- 313 (489)
..|+||||+|++|++++|+||||||||||+ +++.+...+. +| .+.++..++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 4444443333 33 24455544432110
Q ss_pred -------HHh-------------------------------hccceEEcCCCccCcc-chhhhcC---------------
Q 011281 314 -------HDL-------------------------------RSRLSIIPQDPTMFEG-SVHNNLD--------------- 339 (489)
Q Consensus 314 -------~~~-------------------------------r~~i~~v~Q~~~lf~~-ti~~Ni~--------------- 339 (489)
..+ .+..|+++|+..++++ ++..+.+
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 011 1235777777766543 3333332
Q ss_pred -----------------CCCCCc-HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC---
Q 011281 340 -----------------PLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS--- 398 (489)
Q Consensus 340 -----------------~~~~~~-~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~--- 398 (489)
+..... .++..++++.+||.. ..+++.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~----------~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGY----------VKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGG----------SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCch----------hhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 221111 123344455554421 2467888999999999999999999876
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEE------eCCEEEEecChhHHhhcCCCh
Q 011281 399 KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGLIEEFDSPTRLLENKSSS 471 (489)
Q Consensus 399 ~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~el~~~~~~~ 471 (489)
++|||||||++||+.+.+.+++.|.++. +|+|||+|||+++.++.||+|++| ++|+|+++|+|+|++++++..
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~sy 907 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSY 907 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchH
Confidence 7999999999999999999999998764 589999999999999999999999 899999999999999876543
Q ss_pred HHHH
Q 011281 472 FAQL 475 (489)
Q Consensus 472 ~~~l 475 (489)
...+
T Consensus 908 t~~~ 911 (916)
T 3pih_A 908 TGRF 911 (916)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-35 Score=313.78 Aligned_cols=197 Identities=22% Similarity=0.244 Sum_probs=148.5
Q ss_pred EEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE-----------EECCEeCCCCChHH
Q 011281 247 GLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI-----------AIDGIDISSIGLHD 315 (489)
Q Consensus 247 ~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i-----------~~~g~~~~~~~~~~ 315 (489)
|++++|++.. ..+++++ .+++||+++|+||||||||||+|+|+|+++|++|+| .++|.++..+....
T Consensus 82 ~~~~~Y~~~~-~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 82 HVTHRYSANS-FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TEEEECSTTS-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CeEEEECCCc-eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 4688997543 4677777 689999999999999999999999999999999998 23333332221122
Q ss_pred hhccce--EEcCCCcc----Cc---cchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 316 LRSRLS--IIPQDPTM----FE---GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 316 ~r~~i~--~v~Q~~~l----f~---~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
+.+.+. +.+|.... +. .++.+++........+++.++++.+++.+..++. ..+|||||||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGe~Q 228 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRD-----------IEKLSGGELQ 228 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSC-----------TTTCCHHHHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCC-----------hHHCCHHHHH
Confidence 222322 33332211 11 1445554333334567888999999887654433 3468999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhh-cCEEEEEeCCEEE
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVID-SDMVLLLSYGLIE 456 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 456 (489)
|++|||||+++|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||||++|++|..+
T Consensus 229 rv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTT
T ss_pred HHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccc
Confidence 9999999999999999999999999999999999998865 47899999999999987 9999999987543
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.3e-35 Score=312.07 Aligned_cols=192 Identities=17% Similarity=0.226 Sum_probs=149.5
Q ss_pred EEEEEECCCCCcceeeeeEE-eeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE-----------EECCEeCCCCChH
Q 011281 247 GLQVRYAPHLPLVLRGLTCT-FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI-----------AIDGIDISSIGLH 314 (489)
Q Consensus 247 ~v~~~y~~~~~~~l~~i~l~-i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i-----------~~~g~~~~~~~~~ 314 (489)
+++.+|+.+. ++-..|. +++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+...
T Consensus 4 ~~~~~~~~~~---f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 4 EVIHRYKVNG---FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp CEEEESSTTS---CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCceecCCCc---eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 4677887653 3334444 45899999999999999999999999999999999 5677665332111
Q ss_pred H------hhccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH
Q 011281 315 D------LRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388 (489)
Q Consensus 315 ~------~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl 388 (489)
. +...+.++.|.+.++.+|+++++.... ..+++.++++.+++.+..++ .+ .+||||||||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~~-------~~----~~LSgGe~Qrv 147 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKID--ERGKKDEVKELLNMTNLWNK-------DA----NILSGGGLQRL 147 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTTS-------BG----GGCCHHHHHHH
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcch--hHHHHHHHHHHcCCchhhcC-------Ch----hhCCHHHHHHH
Confidence 1 122345555666667788888764211 13456778888888665333 22 35899999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh-cCEEEEEeCCE
Q 011281 389 CLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID-SDMVLLLSYGL 454 (489)
Q Consensus 389 ~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 454 (489)
+|||||+.+|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|.
T Consensus 148 ~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999988778999999999999887 99999998764
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=4.7e-33 Score=289.21 Aligned_cols=200 Identities=19% Similarity=0.173 Sum_probs=151.1
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC--------------------------------------CCCce
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE--------------------------------------PTAGL 300 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~--------------------------------------~~~G~ 300 (489)
++++++|++++| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999966653 45789
Q ss_pred EEECCEeCCCCChHHhhcc-ceEEcCCCccCccchhhhcCCCCCCc----------------------------------
Q 011281 301 IAIDGIDISSIGLHDLRSR-LSIIPQDPTMFEGSVHNNLDPLEEYA---------------------------------- 345 (489)
Q Consensus 301 i~~~g~~~~~~~~~~~r~~-i~~v~Q~~~lf~~ti~~Ni~~~~~~~---------------------------------- 345 (489)
+.+||.+++..+..++... +++++|++.++..+..++..+.+...
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999986666777666 89999999877655443322211100
Q ss_pred ---------------------------------HHHHHHHHHHcCCcHHH--Hh-------ccccccc---hhhcCCCC-
Q 011281 346 ---------------------------------DEEIWEALDKCQLGNEV--RK-------NEGKLES---RVTENGEN- 379 (489)
Q Consensus 346 ---------------------------------~~~~~~~~~~~~l~~~i--~~-------l~~gldt---~vge~G~~- 379 (489)
.+.+.+.++..++.+.- .. -+.|++. .++.++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 01112222222221100 00 0112222 44555544
Q ss_pred -------CCchHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEE
Q 011281 380 -------WSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL 450 (489)
Q Consensus 380 -------LSgGq~Qrl~laRall~~~--~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 450 (489)
||||||||++|||+|+.+| ++|||||||++||+.+.+.+.+.|+++.+++|||+|||+++.+..||++++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999887789999999999998889999999
Q ss_pred ----eCCEEEEec
Q 011281 451 ----SYGLIEEFD 459 (489)
Q Consensus 451 ----~~G~i~~~g 459 (489)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999987653
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.98 E-value=3.3e-32 Score=301.44 Aligned_cols=220 Identities=25% Similarity=0.318 Sum_probs=160.1
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHH-HhcCC-------CC----------------
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQT-LFRIV-------EP---------------- 296 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~-l~g~~-------~~---------------- 296 (489)
..|+++|+++ .+|+||||+|++||+++|+|+||||||||++. |+|++ +|
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 4599999975 16999999999999999999999999999996 66543 23
Q ss_pred --CCc-------eEEECCEeCCCCCh----------HHhhccce---------EEcCC----------------------
Q 011281 297 --TAG-------LIAIDGIDISSIGL----------HDLRSRLS---------IIPQD---------------------- 326 (489)
Q Consensus 297 --~~G-------~i~~~g~~~~~~~~----------~~~r~~i~---------~v~Q~---------------------- 326 (489)
.+| .|.+|+.++...+. +.+|+.++ |.++.
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 466 68899988754322 23333222 22221
Q ss_pred CccC------------------------c-cchhhhcCC--------CCCCc-HHHHHHHHHHcCCcHHHHhccccccch
Q 011281 327 PTMF------------------------E-GSVHNNLDP--------LEEYA-DEEIWEALDKCQLGNEVRKNEGKLESR 372 (489)
Q Consensus 327 ~~lf------------------------~-~ti~~Ni~~--------~~~~~-~~~~~~~~~~~~l~~~i~~l~~gldt~ 372 (489)
-.++ . .||.||+.+ ..... .+++.++++.+++... .
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~----------~ 723 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYL----------R 723 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTS----------B
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcc----------c
Confidence 1111 1 145555432 11111 2344556666655331 2
Q ss_pred hhcCCCCCCchHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEE
Q 011281 373 VTENGENWSMGQRQLVCLARVLLKK---SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVL 448 (489)
Q Consensus 373 vge~G~~LSgGq~Qrl~laRall~~---~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~ 448 (489)
++....+|||||||||+|||+|+++ |++|||||||++||+...+.+.+.|.++. .|+|||+|||+++.+..||||+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 3555677999999999999999996 69999999999999999999999998764 6899999999999997799999
Q ss_pred EE------eCCEEEEecChhHHhhcCCChHHHHHH
Q 011281 449 LL------SYGLIEEFDSPTRLLENKSSSFAQLVA 477 (489)
Q Consensus 449 ~l------~~G~i~~~g~~~el~~~~~~~~~~l~~ 477 (489)
+| ++|+|+..|+++++.+.+......++.
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t~~~l~ 838 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYLR 838 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTTCSSHHHHH
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCchhHHHHHHH
Confidence 99 799999999999998764443334443
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.5e-36 Score=313.66 Aligned_cols=189 Identities=11% Similarity=0.055 Sum_probs=151.2
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-e-EEECCEeCCCCChHHhhccc
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-L-IAIDGIDISSIGLHDLRSRL 320 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G-~-i~~~g~~~~~~~~~~~r~~i 320 (489)
++++||+++|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |.+|| +.++.+
T Consensus 119 i~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg---------~~~~~i 181 (460)
T 2npi_A 119 KYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL---------DPQQPI 181 (460)
T ss_dssp HHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC---------CTTSCS
T ss_pred hhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC---------CccCCe
Confidence 55666665552 69999999999999999999999999999999999999 9 99998 136789
Q ss_pred eEEcCCCccCc----cchhhhcCCCCCC-----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH
Q 011281 321 SIIPQDPTMFE----GSVHNNLDPLEEY-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA 391 (489)
Q Consensus 321 ~~v~Q~~~lf~----~ti~~Ni~~~~~~-----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la 391 (489)
+++||++.+|. .|+++|+ ++... .++++.++++.+|+.+ ... ..+||||||||++||
T Consensus 182 ~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~-----------~~~--~~~LSgGq~qrlalA 247 (460)
T 2npi_A 182 FTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLER-----------INE--NKDLYLECISQLGQV 247 (460)
T ss_dssp SSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSS-----------GGG--CHHHHHHHHHHHHHH
T ss_pred eeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCc-----------ccc--hhhhhHHHHHHHHHH
Confidence 99999986543 4899998 54221 1223334444444433 222 557899999999999
Q ss_pred HH--hccCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhcCCceEEEEecCch------hhhh-cCE-----EEEEe-
Q 011281 392 RV--LLKKSKV----LVLDE-ATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT------SVID-SDM-----VLLLS- 451 (489)
Q Consensus 392 Ra--ll~~~~i----lllDE-pts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~------~~~~-~d~-----i~~l~- 451 (489)
|| |+.+|++ +|||| ||++||+. .+.+.+.+++. +.|+|+|+|+.+ .+.. ||| |++|+
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k 324 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPK 324 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECC
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeC
Confidence 99 9999999 99999 99999999 66666666553 679999999988 5544 999 99999
Q ss_pred CCEEEEecChhHHhh
Q 011281 452 YGLIEEFDSPTRLLE 466 (489)
Q Consensus 452 ~G~i~~~g~~~el~~ 466 (489)
+|+|+ .|+++++.+
T Consensus 325 ~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 325 LDGVS-AVDDVYKRS 338 (460)
T ss_dssp CTTCC-CCCHHHHHH
T ss_pred CCcEE-ECCHHHHhh
Confidence 99999 999988854
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=1.8e-31 Score=295.98 Aligned_cols=212 Identities=23% Similarity=0.301 Sum_probs=154.2
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHh-cCC-------CCCCc-------------
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF-RIV-------EPTAG------------- 299 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~-g~~-------~~~~G------------- 299 (489)
..++++|++. .+|+||||+|++|++++|+|+||||||||+++|+ |.+ .+..|
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 3588898851 2699999999999999999999999999999864 211 12233
Q ss_pred eEEECCEeCCCCC---hH-------Hhh---------ccceEEcCCCccC------------------------------
Q 011281 300 LIAIDGIDISSIG---LH-------DLR---------SRLSIIPQDPTMF------------------------------ 330 (489)
Q Consensus 300 ~i~~~g~~~~~~~---~~-------~~r---------~~i~~v~Q~~~lf------------------------------ 330 (489)
.|.+|+.++.... +. .+| +.+||++|...+-
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 3788888874321 11 111 3468888853221
Q ss_pred -------------------------ccchhhhcCCCCCCc-HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchH
Q 011281 331 -------------------------EGSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ 384 (489)
Q Consensus 331 -------------------------~~ti~~Ni~~~~~~~-~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq 384 (489)
..|+.||+.+..... ..+..++++.++|... ..+....+|||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~----------~l~~~~~~LSGGe 850 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYM----------KLGQPATTLSGGE 850 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTCSSS----------BTTCCGGGCCHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCCCcc----------cccCchhhCCHHH
Confidence 012333332221111 1223444555544320 3455567799999
Q ss_pred HHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEE------eCCE
Q 011281 385 RQLVCLARVLLKKS---KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGL 454 (489)
Q Consensus 385 ~Qrl~laRall~~~---~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~ 454 (489)
||||+|||+|+++| ++|||||||++||+.+.+.+.+.|.++. .|+|||+|||+++.+..||||++| ++|+
T Consensus 851 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~ 930 (972)
T 2r6f_A 851 AQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQ 930 (972)
T ss_dssp HHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCS
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCE
Confidence 99999999999875 9999999999999999999999998764 589999999999999889999999 7999
Q ss_pred EEEecChhHHhhcCC
Q 011281 455 IEEFDSPTRLLENKS 469 (489)
Q Consensus 455 i~~~g~~~el~~~~~ 469 (489)
|+..|+++++.+.+.
T Consensus 931 Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 931 IVAVGTPEEVAEVKE 945 (972)
T ss_dssp EEEEESHHHHHTCTT
T ss_pred EEEecCHHHHHhCch
Confidence 999999999987643
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=1.1e-30 Score=290.77 Aligned_cols=211 Identities=25% Similarity=0.318 Sum_probs=151.1
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHh-c----CCC---CCCce------------
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF-R----IVE---PTAGL------------ 300 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~-g----~~~---~~~G~------------ 300 (489)
..++++|++. .+|+||||+|++|++++|+|+||||||||+++|+ | .+. +..|.
T Consensus 646 ~~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 646 RQLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp SEEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred ceEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 4589999851 2699999999999999999999999999999864 2 221 23343
Q ss_pred -EEECCEeCCCCC---hH-------Hhh---------ccceEEcCCCcc---------------------C-c-------
Q 011281 301 -IAIDGIDISSIG---LH-------DLR---------SRLSIIPQDPTM---------------------F-E------- 331 (489)
Q Consensus 301 -i~~~g~~~~~~~---~~-------~~r---------~~i~~v~Q~~~l---------------------f-~------- 331 (489)
|.+|+.++.... +. .+| +..+|++|...+ | +
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 455665553211 10 111 346777775322 0 0
Q ss_pred ------------------cchh--------hhcCCCCCCc-HHHHHHHHHHcCCcHHHHhccccccc-hhhcCCCCCCch
Q 011281 332 ------------------GSVH--------NNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLES-RVTENGENWSMG 383 (489)
Q Consensus 332 ------------------~ti~--------~Ni~~~~~~~-~~~~~~~~~~~~l~~~i~~l~~gldt-~vge~G~~LSgG 383 (489)
.++. +++.+..... ..+..++++.++ +.. .++....+||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~lg-----------L~~~~l~~~~~~LSGG 867 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVG-----------LGYVRLGQPAPTLSGG 867 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCHHHHHHHHHHHHTT-----------GGGSBTTCCGGGSCHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcchHHHHHHHHHHHcC-----------CCcccccCccccCCHH
Confidence 0222 2222211111 112233444443 333 456667789999
Q ss_pred HHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEE------eCC
Q 011281 384 QRQLVCLARVLLKKS---KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYG 453 (489)
Q Consensus 384 q~Qrl~laRall~~~---~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G 453 (489)
|||||+|||+|+++| ++|||||||++||+.+.+.+.+.|.++. .|.|||+|||+++.+..||+|++| ++|
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G 947 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGG 947 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCS
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCC
Confidence 999999999999875 9999999999999999999999998764 589999999999999889999999 699
Q ss_pred EEEEecChhHHhhcCC
Q 011281 454 LIEEFDSPTRLLENKS 469 (489)
Q Consensus 454 ~i~~~g~~~el~~~~~ 469 (489)
+|+..|+++++.+.+.
T Consensus 948 ~Iv~~G~~~el~~~~~ 963 (993)
T 2ygr_A 948 TVVAQGTPEDVAAVPA 963 (993)
T ss_dssp EEEEEECHHHHHHCTT
T ss_pred EEEEecCHHHHHhCCH
Confidence 9999999999987644
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=5.1e-29 Score=250.51 Aligned_cols=204 Identities=19% Similarity=0.233 Sum_probs=142.4
Q ss_pred eeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCC----------------------------------------------
Q 011281 261 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV---------------------------------------------- 294 (489)
Q Consensus 261 ~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~---------------------------------------------- 294 (489)
+++++++.+| +++|+||||||||||+++|..+.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578889999 99999999999999999998443
Q ss_pred ----CCCCceEEECCEeCCCCChHHhhccceEEcCCCccC-ccchhhhcCCCCCC----------------cHHHHHHHH
Q 011281 295 ----EPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF-EGSVHNNLDPLEEY----------------ADEEIWEAL 353 (489)
Q Consensus 295 ----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~Ni~~~~~~----------------~~~~~~~~~ 353 (489)
.+.+|.+.+||.+++..+...+...+++.+|+..++ .+++.+|+...+.. ..+++.+.+
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344678999999885545556666788889988765 67888888653210 001122221
Q ss_pred HHc------------CCcH-HHHhccccccchhhc------CCCCCCchHHHHHHHHHHhc----cCCCEEEEeCCCCCC
Q 011281 354 DKC------------QLGN-EVRKNEGKLESRVTE------NGENWSMGQRQLVCLARVLL----KKSKVLVLDEATASV 410 (489)
Q Consensus 354 ~~~------------~l~~-~i~~l~~gldt~vge------~G~~LSgGq~Qrl~laRall----~~~~illlDEpts~l 410 (489)
... .+.+ ....++.|+++.++. ....||||||||++|||||+ ++|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 0000 112244466554332 24579999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEE--EEEeCCEE-EEecChhHHh
Q 011281 411 DTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMV--LLLSYGLI-EEFDSPTRLL 465 (489)
Q Consensus 411 D~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i--~~l~~G~i-~~~g~~~el~ 465 (489)
|+...+.+.+.+.+..++.|+|+|||+.+.+..||++ ++|++|.. +...+.++..
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~~ 312 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKIL 312 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC----
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcchhh
Confidence 9999999999998876678999999998877789987 88888854 4555555543
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=1.2e-30 Score=245.83 Aligned_cols=158 Identities=16% Similarity=0.100 Sum_probs=100.9
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhh
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 337 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 337 (489)
.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++.. +...+++.++|+||++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-CchhhhcceEEecCCH-------HHH
Confidence 478885 89999999999999999999999999 999999953 33321 2234577899999987 566
Q ss_pred c-CCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 011281 338 L-DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 416 (489)
Q Consensus 338 i-~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~ 416 (489)
+ .+... ....+....-.+ ..+..+.. | | |||||++|||||+.+|++|||||||++ +.+
T Consensus 79 l~~~~~~-----~~~~~~~~~~~~-------~~~~~l~~-g--l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 79 IDPYLRP-----LHDALRDMVEPE-------VIPKLMEA-G--I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp -CTTTHH-----HHHHHTTTSCTT-------HHHHHHHT-T--S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHH-----HHHHHHHhccHH-------HHHHHHHh-C--C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 6 33210 000000000000 11111111 1 1 999999999999999999999999999 888
Q ss_pred HHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEE
Q 011281 417 LIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLI 455 (489)
Q Consensus 417 ~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 455 (489)
.+.+.|.++.+++|+| |||+++.+.. +...++|..
T Consensus 138 ~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G~~ 172 (208)
T 3b85_A 138 QMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSGLR 172 (208)
T ss_dssp HHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred HHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCcHH
Confidence 8888888774578999 9999886654 444566643
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=1.7e-26 Score=235.85 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=75.4
Q ss_pred cCCCCCCchHHHHHHHHHHhc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEE
Q 011281 375 ENGENWSMGQRQLVCLARVLL------KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMV 447 (489)
Q Consensus 375 e~G~~LSgGq~Qrl~laRall------~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i 447 (489)
....+||||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++....||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 344579999999999999999 7999999999999999999999999998764 578999999999998789999
Q ss_pred EEEeCCEEEE
Q 011281 448 LLLSYGLIEE 457 (489)
Q Consensus 448 ~~l~~G~i~~ 457 (489)
++|++|+|++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=1.1e-27 Score=220.09 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=108.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCCCcHHHHHH
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWE 351 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 351 (489)
+++|+||||||||||+++|+|++. |.++|.+..+......++.++|++|++ +..+|+. . .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~-~-------- 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-S-S-------- 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-E-E--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-H-h--------
Confidence 689999999999999999999985 667776654332224577899999987 3444541 1 0
Q ss_pred HHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH-----hccCCCEEEEeC--CCCCCCHHHHHHHHHHHHH
Q 011281 352 ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV-----LLKKSKVLVLDE--ATASVDTATDNLIQHTLGQ 424 (489)
Q Consensus 352 ~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa-----ll~~~~illlDE--pts~lD~~~~~~i~~~l~~ 424 (489)
.+. + .+..++..+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.+.+
T Consensus 62 ----~~~-------~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 62 ----KFF-------T--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp ----TTC-------C--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred ----hcC-------C--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 000 0 0124556677899999999999996 999999999999 9999999999999998876
Q ss_pred hcCCceEEEEec---Cchhhhh-cCEEEEEeCCEEEE
Q 011281 425 HFSDCTVITIAH---RITSVID-SDMVLLLSYGLIEE 457 (489)
Q Consensus 425 ~~~~~t~i~itH---~~~~~~~-~d~i~~l~~G~i~~ 457 (489)
.+.|+|+++| +.+.+.. ||| .+|+|.+
T Consensus 129 --~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 --PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp --TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred --CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 4667888986 6667765 777 5667665
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.93 E-value=5.7e-28 Score=220.66 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=105.4
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCc--cCccchhhhcC
Q 011281 262 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT--MFEGSVHNNLD 339 (489)
Q Consensus 262 ~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~ti~~Ni~ 339 (489)
|+||++++||+++|+||||||||||++++.+ |...++ .+.++ ++++|++. .+.++..+++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~--------~d~~~---g~~~~~~~~~~~~~~~~~~~- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS--------SDFCR---GLMSDDENDQTVTGAAFDVL- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE--------HHHHH---HHHCSSTTCGGGHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc--------cHHHH---HHhcCcccchhhHHHHHHHH-
Confidence 6899999999999999999999999999653 222221 22333 67778763 1222222221
Q ss_pred CCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH-----
Q 011281 340 PLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT----- 414 (489)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~----- 414 (489)
.... ...+..|+.+.+. .-...|||||||++||||+..+|++++|||||++||+.+
T Consensus 63 ----------~~~~--------~~~~~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~ 123 (171)
T 4gp7_A 63 ----------HYIV--------SKRLQLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD 123 (171)
T ss_dssp ----------HHHH--------HHHHHTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred ----------HHHH--------HHHHhCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence 1100 1112234443333 234469999999999999999999999999999999994
Q ss_pred -----------HHHHHHHHHHhc-CCceEEEEecCchhhhhcCEE
Q 011281 415 -----------DNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMV 447 (489)
Q Consensus 415 -----------~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i 447 (489)
.+.+++.+++.. +|.|+|+|||+++.+..++++
T Consensus 124 ~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 124 RQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 477777766543 488999999999999887765
No 72
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.93 E-value=3e-29 Score=238.19 Aligned_cols=168 Identities=15% Similarity=0.107 Sum_probs=120.7
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh-HHhhccceEEcCCCccCcc-c-hh
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-HDLRSRLSIIPQDPTMFEG-S-VH 335 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v~Q~~~lf~~-t-i~ 335 (489)
.|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |+++...+. ...++.++|++|++.+|.. + ..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 689999999999999999999999999999999999 6 99999 877654322 2356789999999887753 2 12
Q ss_pred hhc---CCCC---CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH-----HHHhccCCCEEEEe
Q 011281 336 NNL---DPLE---EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL-----ARVLLKKSKVLVLD 404 (489)
Q Consensus 336 ~Ni---~~~~---~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l-----aRall~~~~illlD 404 (489)
+++ .+.. ...++++.++++..... .++ .+|||||+||+++ ||+++.+|++++||
T Consensus 88 ~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~------------il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Ld 152 (218)
T 1z6g_A 88 DFLEYDNYANNFYGTLKSEYDKAKEQNKIC------------LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLL 152 (218)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEE------------EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHH
T ss_pred chhhhhhcccccCCCcHHHHHHHHhCCCcE------------EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHH
Confidence 222 1111 12355667776654321 111 5689999999999 99999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeC
Q 011281 405 EATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 452 (489)
Q Consensus 405 Epts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 452 (489)
|||+++|.++++.+.+.+....++.| ++| +..+|.|+++++
T Consensus 153 e~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 153 SRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999999999987666666 677 466899888654
No 73
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.92 E-value=7.2e-28 Score=248.10 Aligned_cols=172 Identities=15% Similarity=0.098 Sum_probs=136.5
Q ss_pred cceeeeeEEeeCCC--------------------EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhh
Q 011281 258 LVLRGLTCTFLGGM--------------------KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLR 317 (489)
Q Consensus 258 ~~l~~i~l~i~~g~--------------------~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r 317 (489)
.+|+++||++++|+ +++|+||||||||||+|+|+|+++|++|+|.++|.+++ |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 48999999999999 99999999999999999999999999999999997653 1
Q ss_pred ccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCch--HHHHHHHHHHhc
Q 011281 318 SRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMG--QRQLVCLARVLL 395 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgG--q~Qrl~laRall 395 (489)
.++++|++.....|+.||+.++.. +.++.+.++.+++.+. +..+ . |||| ||||++||||+.
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~--------~~~~----~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEY--------DFFI----I-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGC--------SEEE----E-EESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch--HHHHHHHHHHcCCCcc--------CCeE----E-eCCCCccHHHHHHHHHHH
Confidence 278999975445699999877532 3456778888876542 1111 1 7899 999999999999
Q ss_pred c----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc------C----CceEEEEecCchh--hhh-cCEEE-EEe
Q 011281 396 K----------KSKVLVLDEATASVDTATDNLIQHTLGQHF------S----DCTVITIAHRITS--VID-SDMVL-LLS 451 (489)
Q Consensus 396 ~----------~~~illlDEpts~lD~~~~~~i~~~l~~~~------~----~~t~i~itH~~~~--~~~-~d~i~-~l~ 451 (489)
+ +|++++|||||++||+.+++.+.+.+++.. . ..++++.||.++. +.. ||+|. .|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 9 999999999999999999888888877652 1 2568888999886 666 88874 344
Q ss_pred CC
Q 011281 452 YG 453 (489)
Q Consensus 452 ~G 453 (489)
.|
T Consensus 253 eg 254 (413)
T 1tq4_A 253 IY 254 (413)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 74
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.92 E-value=1e-27 Score=241.33 Aligned_cols=141 Identities=17% Similarity=0.150 Sum_probs=114.7
Q ss_pred EEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEc
Q 011281 245 IHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 324 (489)
Q Consensus 245 ~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 324 (489)
+++++| | ++++++++|.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++.....++.+++++
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe
Confidence 556666 5 238999999999999999999999999999999999999999999999865 222222344454443
Q ss_pred CCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEe
Q 011281 325 QDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLD 404 (489)
Q Consensus 325 Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlD 404 (489)
| |||+||++|||||..+|++++||
T Consensus 224 -------------------------------------------g-------------gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 224 -------------------------------------------G-------------GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp -------------------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred -------------------------------------------C-------------CChhHHHHHHHHhhhCCCEEEEc
Confidence 0 89999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCc-eEEEEecCchhhhhcCEEEEEeCCEE
Q 011281 405 EATASVDTATDNLIQHTLGQHFSDC-TVITIAHRITSVIDSDMVLLLSYGLI 455 (489)
Q Consensus 405 Epts~lD~~~~~~i~~~l~~~~~~~-t~i~itH~~~~~~~~d~i~~l~~G~i 455 (489)
|||+. .+.+.+.....++ |+|+++|+.+....|||+++|++|..
T Consensus 248 E~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 248 ELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp CCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred CCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 99982 2445565555554 79999999997778999999998864
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.91 E-value=1.1e-27 Score=249.58 Aligned_cols=195 Identities=13% Similarity=0.085 Sum_probs=153.9
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE---eCCCCC-----
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI---DISSIG----- 312 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~---~~~~~~----- 312 (489)
+.++++|+++.|+.+ ..+|+++ |++.+|++++|+||||||||||+++|+|+++|+.|.|.++|+ ++.++.
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 458899999999633 3599999 999999999999999999999999999999999999999998 554321
Q ss_pred hHHhhccceEEcCC-CccC-ccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 313 LHDLRSRLSIIPQD-PTMF-EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 313 ~~~~r~~i~~v~Q~-~~lf-~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
...+++.++|++|+ ..++ ..|+.+|+.+. .+... ..+ .+ +.. -+ +...+||+|| ||++|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-----ae~~~---~~~-~~-v~~---~l-----d~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRI-----AEDFR---DRG-QH-VLL---IM-----DSLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-----HHHHH---TTT-CE-EEE---EE-----ECHHHHHHHH-HHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHH-----HHHHH---hCC-CC-HHH---HH-----HhHHHHHHHH-HHHHH
Confidence 34578889999995 3344 45888887542 11111 001 00 000 01 2245689999 99999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-----Cc-----eEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFS-----DC-----TVITIAHRITSVIDSDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~-----~~-----t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 460 (489)
| +++|++ |++||+.+...+.+.+.+..+ |+ |++++||+++ ...||++++|.+|+|+..|+
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHH
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCC
Confidence 9 889998 999999999999999987644 54 9999999999 66699999999999999999
Q ss_pred hhHHhh
Q 011281 461 PTRLLE 466 (489)
Q Consensus 461 ~~el~~ 466 (489)
+.++..
T Consensus 339 ~~~~~~ 344 (438)
T 2dpy_A 339 LAEAGH 344 (438)
T ss_dssp HHHTTC
T ss_pred HHHccC
Confidence 988764
No 76
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.89 E-value=1.2e-25 Score=223.32 Aligned_cols=173 Identities=15% Similarity=0.133 Sum_probs=127.1
Q ss_pred eeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----hHHh--hccceEEcCCCc-cCc-c
Q 011281 261 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHDL--RSRLSIIPQDPT-MFE-G 332 (489)
Q Consensus 261 ~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ 332 (489)
.++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++ .
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4578889999999999999999999999999999999999999999876542 1233 457999999998 765 4
Q ss_pred chhhhcCCCC--CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC--EEEEeCCCC
Q 011281 333 SVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATA 408 (489)
Q Consensus 333 ti~~Ni~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~--illlDEpts 408 (489)
|+++|+.++. ..+ ..+++.+|+.+..+ ..+++ || |||++||||+..+|+ +|+|| ||+
T Consensus 171 ~v~e~l~~~~~~~~d----~~lldt~gl~~~~~-------~~~~e----LS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYD----VVLCDTSGRLHTNY-------SLMEE----LI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHTTCS----EEEECCCCCSSCCH-------HHHHH----HH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHcCCc----chHHhcCCCCcchh-------HHHHH----HH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 8999986421 110 11233444433222 22222 67 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHhcCCceEEEEec---------Cchhhhh-cCEEEEEeCCEEE
Q 011281 409 SVDTATDNLIQHTLGQHFSDCTVITIAH---------RITSVID-SDMVLLLSYGLIE 456 (489)
Q Consensus 409 ~lD~~~~~~i~~~l~~~~~~~t~i~itH---------~~~~~~~-~d~i~~l~~G~i~ 456 (489)
++|+.... +.+.+ ..+.|+|++|| .++.+.. .++|.++..|+.+
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99998653 22322 24789999999 4444444 6899999999754
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.89 E-value=2.1e-25 Score=218.39 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=96.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCcc-chhhhcCCCCCCc----H
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLEEYA----D 346 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~----~ 346 (489)
.++|+||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.++.... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 2346789999999998876 9999998864322 2
Q ss_pred HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 011281 347 EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF 426 (489)
Q Consensus 347 ~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~ 426 (489)
+.+.+.++ .++...++. .||||||||+++|||++. +++|||||++||+.. ..+++.+.+
T Consensus 81 ~~i~~~~~----~~~~~~~~~-----------~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~-- 139 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLKE-----------EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSK-- 139 (270)
T ss_dssp HHHHHHHH----HHHHHHHHH-----------HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHT--
T ss_pred HHHHHHHH----HHHHhhhHH-----------hcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHh--
Confidence 33333333 233333332 379999999999999875 999999999999976 334444433
Q ss_pred CCceEEEEecCchhhh
Q 011281 427 SDCTVITIAHRITSVI 442 (489)
Q Consensus 427 ~~~t~i~itH~~~~~~ 442 (489)
..++|+|.|+.+.+.
T Consensus 140 -~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 140 -VVNIIPVIAKADTMT 154 (270)
T ss_dssp -TSEEEEEETTGGGSC
T ss_pred -cCcEEEEEeccccCC
Confidence 389999999987664
No 78
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.89 E-value=6e-26 Score=213.51 Aligned_cols=166 Identities=13% Similarity=0.057 Sum_probs=110.4
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCcc-chhh
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHN 336 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~ 336 (489)
++++| .++++||+++|+||||||||||+++|+|++++ |.+++.....-.....++.++|++|++.+|.. |+.+
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 47888 79999999999999999999999999999863 44544222111112346789999999988864 6777
Q ss_pred hcCCC----C-----CCcHHHHHHHHHH----------cCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 337 NLDPL----E-----EYADEEIWEALDK----------CQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 337 Ni~~~----~-----~~~~~~~~~~~~~----------~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
|+... . ..+.+++.+.++. +++.+.....|. .|| ||+.+
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~lS-----------~l~~~ 141 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----------AVT-----------VFLAP 141 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----------SEE-----------EEEEC
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----------cEE-----------EEEEC
Confidence 76321 1 1233344443333 233222222222 234 89999
Q ss_pred CCEEEEeCCCCCC----CHHHHHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEe
Q 011281 398 SKVLVLDEATASV----DTATDNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLS 451 (489)
Q Consensus 398 ~~illlDEpts~l----D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~ 451 (489)
|++++|||||+++ |+...+++.+.+++.. .+.|+|+|||+++.+.. ||||++|.
T Consensus 142 p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 142 PSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp SCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 9999999999998 6778888988887764 37899999999999886 99999984
No 79
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.88 E-value=3.8e-23 Score=209.67 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=75.3
Q ss_pred CCCchHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEE
Q 011281 379 NWSMGQRQLVCLARVLL---------KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLL 449 (489)
Q Consensus 379 ~LSgGq~Qrl~laRall---------~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~ 449 (489)
.|||||+||++|||+|+ .+|||||||||||+||+...+.+.+.+.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998763 79999999 444 8999999
Q ss_pred EeCCEEEEecChhHH
Q 011281 450 LSYGLIEEFDSPTRL 464 (489)
Q Consensus 450 l~~G~i~~~g~~~el 464 (489)
|++|+|++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999887
No 80
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.88 E-value=1.5e-24 Score=219.53 Aligned_cols=173 Identities=14% Similarity=0.123 Sum_probs=128.1
Q ss_pred eeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----hHHh--hccceEEcCCCc-cCc-c
Q 011281 261 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHDL--RSRLSIIPQDPT-MFE-G 332 (489)
Q Consensus 261 ~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ 332 (489)
.++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..|+|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578889999999999999999999999999999999999999999876542 1223 457999999987 665 4
Q ss_pred chhhhcCCCC--CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC--EEEEeCCCC
Q 011281 333 SVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATA 408 (489)
Q Consensus 333 ti~~Ni~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~--illlDEpts 408 (489)
|+++|+.++. ..+ ..+++.+|+.+..++ .++ .|| |||++||||+..+|+ +|+|| ||+
T Consensus 228 tv~e~l~~~~~~~~d----~~lldt~Gl~~~~~~-------~~~----eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD----VVLCDTSGRLHTNYS-------LME----ELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTCS----EEEEECCCCSSCCHH-------HHH----HHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCCH----HHHHHhcCCChhhhh-------HHH----HHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 8999986421 110 012334444332222 222 267 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHhcCCceEEEEec---------Cchhhhh-cCEEEEEeCCEEE
Q 011281 409 SVDTATDNLIQHTLGQHFSDCTVITIAH---------RITSVID-SDMVLLLSYGLIE 456 (489)
Q Consensus 409 ~lD~~~~~~i~~~l~~~~~~~t~i~itH---------~~~~~~~-~d~i~~l~~G~i~ 456 (489)
++|+.... +.+.+ ..+.|+|++|| .++.+.. .+.|..+..|+.+
T Consensus 289 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 289 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 99998653 22222 24789999999 3444443 6899999999743
No 81
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.87 E-value=3.3e-25 Score=221.19 Aligned_cols=173 Identities=13% Similarity=0.178 Sum_probs=129.7
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEE-----------------------eeCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCT-----------------------FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 297 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~-----------------------i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~ 297 (489)
..|+++||++.|. ++++++++. +++|++++|+||||||||||+++|+|+++|.
T Consensus 42 ~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 42 EQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 4589999999994 467777764 8999999999999999999999999999997
Q ss_pred CceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCC--C----CcHHHHHHHHHHcCCcHHHHhcccccc-
Q 011281 298 AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE--E----YADEEIWEALDKCQLGNEVRKNEGKLE- 370 (489)
Q Consensus 298 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~--~----~~~~~~~~~~~~~~l~~~i~~l~~gld- 370 (489)
.|. ..+++|+|++++++.|+++|+.+.. . .+.+.+.+.++..+ .|..
T Consensus 118 ~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~---------~~~~~ 171 (312)
T 3aez_A 118 DHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK---------SGSDY 171 (312)
T ss_dssp TTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH---------TTCSC
T ss_pred CCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC---------CCccc
Confidence 663 4699999999999889999987532 1 22344555555433 2221
Q ss_pred chhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhh--cCEEE
Q 011281 371 SRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVID--SDMVL 448 (489)
Q Consensus 371 t~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~--~d~i~ 448 (489)
..+ ..|||||+||+++|||++.+|+|+|||||++.+|+.. ..+.+.. ..+|+|+|..+.... .+|.+
T Consensus 172 ~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~--D~~I~V~a~~~~~~~R~i~R~~ 240 (312)
T 3aez_A 172 ACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF--DFSLYVDARIEDIEQWYVSRFL 240 (312)
T ss_dssp EEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC--SEEEEEEECHHHHHHHHHHHHH
T ss_pred CCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc--CcEEEEECCHHHHHHHHHHHHH
Confidence 232 3589999999999999999999999999999998622 1122222 256888888776432 67776
Q ss_pred EEeCCE
Q 011281 449 LLSYGL 454 (489)
Q Consensus 449 ~l~~G~ 454 (489)
.+.+|+
T Consensus 241 ~~rd~~ 246 (312)
T 3aez_A 241 AMRTTA 246 (312)
T ss_dssp HHTTTG
T ss_pred HHHhcc
Confidence 665554
No 82
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.86 E-value=1.5e-23 Score=211.98 Aligned_cols=195 Identities=15% Similarity=0.092 Sum_probs=143.0
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC-------CCh
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS-------IGL 313 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~-------~~~ 313 (489)
.-++.+++++.|+.+ ..+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.++|++.++ +..
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 347889999999733 3599999 9999999999999999999999999999999999999998865211 111
Q ss_pred HHhhccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccch-hhcCCCCCCchHHHHHHHHH
Q 011281 314 HDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESR-VTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 314 ~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~-vge~G~~LSgGq~Qrl~laR 392 (489)
..+++.+.+++|.. ....+++..+...+.+.++... .|.+.. +-+.-.+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~---------------~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSD---------------RPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHHTTEEEEEECTT---------------SCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhhceEEEEECCC---------------CCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 12333344444421 1113444444444444443322 122211 013345789999 999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCc-----eEEEEecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF---SDC-----TVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~~~---~~~-----t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el 464 (489)
+.+|++ |+++|+.....+.+.+.+.. .|. |++++||+++ -.-||+++++.+|+|+..|+..++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 688888 99999999999999998764 366 8999999999 455999999999999999988776
Q ss_pred h
Q 011281 465 L 465 (489)
Q Consensus 465 ~ 465 (489)
.
T Consensus 254 ~ 254 (347)
T 2obl_A 254 N 254 (347)
T ss_dssp T
T ss_pred C
Confidence 4
No 83
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.85 E-value=2.3e-24 Score=196.48 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=88.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCEeCCCCC---hHHhh-ccce----EEcCCCccCccchhhhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGIDISSIG---LHDLR-SRLS----IIPQDPTMFEGSVHNNLD 339 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~~~~---~G~i~~~g~~~~~~~---~~~~r-~~i~----~v~Q~~~lf~~ti~~Ni~ 339 (489)
++++|+|+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+.+| +.++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999987776 66788 4788 899999988 322
Q ss_pred CCCCCcHHHHHHHHHHcCCcHHHHh-ccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEE
Q 011281 340 PLEEYADEEIWEALDKCQLGNEVRK-NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVL 401 (489)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~i~~-l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~il 401 (489)
.. ++. .+++.+++.. +| |+||.|+|+ |||||||||+||||++++|++.
T Consensus 77 ----~~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VS-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CC-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CC-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 11 121 7899999999 99 999999995 9999999999999999999874
No 84
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.85 E-value=3e-20 Score=187.83 Aligned_cols=75 Identities=21% Similarity=0.203 Sum_probs=67.0
Q ss_pred CCCCCchHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEE
Q 011281 377 GENWSMGQRQ------LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLL 449 (489)
Q Consensus 377 G~~LSgGq~Q------rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~ 449 (489)
...||||||| |+++|||++.+|++|||||||++||+.....+.+.|.++. .++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3569999999 6788999999999999999999999999999999998754 46799999999887777999999
Q ss_pred Ee
Q 011281 450 LS 451 (489)
Q Consensus 450 l~ 451 (489)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.84 E-value=2.7e-23 Score=222.21 Aligned_cols=172 Identities=13% Similarity=0.059 Sum_probs=119.6
Q ss_pred EECCCCCcceeeeeE-EeeCCCEEEEECCCCCcHHHHHHH--HhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCC
Q 011281 251 RYAPHLPLVLRGLTC-TFLGGMKTGIVGRTGSGKSTLIQT--LFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP 327 (489)
Q Consensus 251 ~y~~~~~~~l~~i~l-~i~~g~~~~ivG~sGsGKSTl~~~--l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 327 (489)
+|+.. .++|++++| .+++|++++|+||||||||||+++ ++|+++|.+|.|.++|.+. .......++.+||++|++
T Consensus 20 ~~~~g-~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 20 KMRTM-IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKL 97 (525)
T ss_dssp EECCC-CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHH
T ss_pred cccCC-chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHh
Confidence 34433 358999999 999999999999999999999999 7899999999999999873 222334567899999987
Q ss_pred ccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCC
Q 011281 328 TMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 407 (489)
Q Consensus 328 ~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpt 407 (489)
... +|+.+.....+++..++++..++.+...+.+. .|||| +|++++|||||
T Consensus 98 ~~~-----~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~g-------------~~~~lilDe~t 148 (525)
T 1tf7_A 98 VDE-----GKLFILDASPDPEGQEVVGGFDLSALIERINY-----------AIQKY-------------RARRVSIDSVT 148 (525)
T ss_dssp HHT-----TSEEEEECCCCSSCCSCCSSHHHHHHHHHHHH-----------HHHHH-------------TCSEEEEECST
T ss_pred hcc-----CcEEEEecCcccchhhhhcccCHHHHHHHHHH-----------HHHHc-------------CCCEEEECCHH
Confidence 631 12211000000000111122222222222221 13555 57899999999
Q ss_pred CC-----CCHHHHHHHHHHHHHhc-CCceEEEEecCchhh---------hh-cCEEEEEeCC
Q 011281 408 AS-----VDTATDNLIQHTLGQHF-SDCTVITIAHRITSV---------ID-SDMVLLLSYG 453 (489)
Q Consensus 408 s~-----lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~---------~~-~d~i~~l~~G 453 (489)
+. +|+...+.+.+.++.+. .+.|+|+|||+++.+ .. ||+|++|++|
T Consensus 149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 84 58899999998887654 489999999999984 45 9999999983
No 86
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=5.5e-22 Score=221.58 Aligned_cols=170 Identities=19% Similarity=0.126 Sum_probs=121.9
Q ss_pred HHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCC-CcHHHHHHHHHHcCCcHHHHh
Q 011281 286 LIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE-YADEEIWEALDKCQLGNEVRK 364 (489)
Q Consensus 286 l~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~l~~~i~~ 364 (489)
+..|.-+.+.|..|+|.++|+++.++....+.+.++++.+-. -+..++...... ...++..+.+..+|+.+.
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l--- 456 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLN----LTEREREIVGELLKEIEKRLEFLVDVGLEYL--- 456 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCC----CCTTTTTTHHHHHHHHHHHHHHHHTTTCTTC---
T ss_pred chhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhcc----CcHHHHHHHHhhHHHHHHHHHHHHHcCCccc---
Confidence 445566778999999999999986544333444444432211 111111100000 001222334444544321
Q ss_pred ccccccchhhcCCCCCCchHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhh
Q 011281 365 NEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSV 441 (489)
Q Consensus 365 l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~--illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~ 441 (489)
..+....+||||||||++|||||..+|+ +|||||||++||+...+.+.+.|+++. .|+|+|+|+|+++.+
T Consensus 457 -------~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~ 529 (916)
T 3pih_A 457 -------TLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVI 529 (916)
T ss_dssp -------BTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHH
T ss_pred -------cccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1233445699999999999999999887 999999999999999999999998875 478999999999999
Q ss_pred hhcCEEEEE------eCCEEEEecChhHHhhcCC
Q 011281 442 IDSDMVLLL------SYGLIEEFDSPTRLLENKS 469 (489)
Q Consensus 442 ~~~d~i~~l------~~G~i~~~g~~~el~~~~~ 469 (489)
..||+|++| ++|+|+..|+++++++.+.
T Consensus 530 ~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~ 563 (916)
T 3pih_A 530 RNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPD 563 (916)
T ss_dssp HTCSEEEEEESSSGGGCSEEEEEECHHHHHHSCT
T ss_pred HhCCEEEEEcCCcccCCCEEEEeechhhhhcCch
Confidence 899999999 9999999999999987644
No 87
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.84 E-value=3e-22 Score=194.98 Aligned_cols=131 Identities=20% Similarity=0.109 Sum_probs=99.0
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CceEEECCEeCCCCChHHhhccceEEcCCCccCccchhh
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 336 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 336 (489)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 4899999 8999999999999999999999999999998 999999987653221 1122222221
Q ss_pred hcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 011281 337 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 416 (489)
Q Consensus 337 Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~ 416 (489)
+-|++ ... -|++|||||..+|+++++|||| |+++..
T Consensus 79 -----------------------------~~gl~------~~~------l~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 79 -----------------------------EVGED------TKS------FADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp -----------------------------EBTTT------BSC------HHHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred -----------------------------HhCCC------HHH------HHHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 11221 112 2899999999999999999999 988765
Q ss_pred HHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEe
Q 011281 417 LIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLS 451 (489)
Q Consensus 417 ~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 451 (489)
.+.+ ....+.|+++++|+.+....|||+++|.
T Consensus 115 ~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 115 TALR---AAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHH---HHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 4443 3346899999999988666688876553
No 88
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.84 E-value=2.7e-23 Score=192.51 Aligned_cols=159 Identities=17% Similarity=0.179 Sum_probs=120.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCCCcHHHH
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEI 349 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~ 349 (489)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..++. .+++.++|++|+. .++ ++|+.....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~------ 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGL------ 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCC------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccc------
Confidence 78999999999999999999999999 999 999999886543 4688999999986 332 334321000
Q ss_pred HHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH-HHHH---HhccCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 011281 350 WEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV-CLAR---VLLKKSKVLVLDE--ATASVDTATDNLIQHTLG 423 (489)
Q Consensus 350 ~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl-~laR---all~~~~illlDE--pts~lD~~~~~~i~~~l~ 423 (489)
... +...+.++|+.+..+|+|||+++ ++++ |++++|+++|||| ||..+|+...+.+.+.+.
T Consensus 67 -------~~~------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 67 -------EPP------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp -------CCC------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred -------cCC------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 000 01123478888889999999998 5565 6899999999999 899999988777777776
Q ss_pred HhcCCceEE----EEecCchhhhhcCEEEEEeCCEEEEec
Q 011281 424 QHFSDCTVI----TIAHRITSVIDSDMVLLLSYGLIEEFD 459 (489)
Q Consensus 424 ~~~~~~t~i----~itH~~~~~~~~d~i~~l~~G~i~~~g 459 (489)
. .+++| .|+|+.+ ...+|+|..+++|+|.+-.
T Consensus 134 ~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 134 T---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp C---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred C---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 3 34555 3449875 4557888888999998743
No 89
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.83 E-value=2.7e-21 Score=206.25 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=70.5
Q ss_pred CCC-CchHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCC
Q 011281 378 ENW-SMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYG 453 (489)
Q Consensus 378 ~~L-SgGq~Qrl~laRall~~~--~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 453 (489)
..| |||||||++||||++.+| ++|||||||++||+.+...+.+.|.++.+++|||+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 346 999999999999999999 9999999999999999999999998876689999999999999889999999554
No 90
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.83 E-value=2.6e-24 Score=220.07 Aligned_cols=174 Identities=18% Similarity=0.115 Sum_probs=143.2
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CceEEECCEeCCCCChHHhhccceEEcC-----CCccCcc
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLRSRLSIIPQ-----DPTMFEG 332 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~lf~~ 332 (489)
+|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.+.+.++. + .++..+++|+| ++..|.+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHH
Confidence 566665 7899999999999999999999999999998 899987776653 2 35778999999 8889999
Q ss_pred chhhhcCCCCCC-------cHHHHHHHHHHcCCcHH-------------H----------------HhccccccchhhcC
Q 011281 333 SVHNNLDPLEEY-------ADEEIWEALDKCQLGNE-------------V----------------RKNEGKLESRVTEN 376 (489)
Q Consensus 333 ti~~Ni~~~~~~-------~~~~~~~~~~~~~l~~~-------------i----------------~~l~~gldt~vge~ 376 (489)
++++|+...++. +.+.+..+++.++..+. + ..++.++++.|+++
T Consensus 201 ~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qr 280 (372)
T 2ewv_A 201 ALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQR 280 (372)
T ss_dssp HHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEE
T ss_pred HHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEE
Confidence 999999876554 67777777777654221 1 12467899999999
Q ss_pred CCCCCchHHHHHHHHHHhccCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHhcCCceEEEEecCchh
Q 011281 377 GENWSMGQRQLVCLARVLLKKSKV--LVLDEATASVDTA----T-----DNLIQHTLGQHFSDCTVITIAHRITS 440 (489)
Q Consensus 377 G~~LSgGq~Qrl~laRall~~~~i--lllDEpts~lD~~----~-----~~~i~~~l~~~~~~~t~i~itH~~~~ 440 (489)
+..+|+| ||+++||+++.+|++ +|+||+|++||.. + +...++.+....+|+|.+.++||++.
T Consensus 281 l~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 281 LLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred eEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 9999999 899999999999999 9999999999965 2 23466777777789999999999874
No 91
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.83 E-value=2.6e-21 Score=219.61 Aligned_cols=170 Identities=11% Similarity=0.140 Sum_probs=120.4
Q ss_pred ccEEEEE-----EEEEECCCCCcceeeeeEEeeC-------CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeC
Q 011281 241 GEVDIHG-----LQVRYAPHLPLVLRGLTCTFLG-------GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 308 (489)
Q Consensus 241 ~~i~~~~-----v~~~y~~~~~~~l~~i~l~i~~-------g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~ 308 (489)
..|+++| |++.|+++ ..+++|++|++++ |++++|+|||||||||++|++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 3599999 99999533 3599999999987 999999999999999999999 98753
Q ss_pred CCCChHHhhccce-EEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHH
Q 011281 309 SSIGLHDLRSRLS-IIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQL 387 (489)
Q Consensus 309 ~~~~~~~~r~~i~-~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qr 387 (489)
..++| ||||++. .-|+.+||.. ..|+.+.+. .|. +.+|+++++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~--------------rig~~d~~~---~~~--------stf~~em~~- 858 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFT--------------RLGASDRIM---SGE--------STFFVELSE- 858 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEE--------------ECC--------------------CHHHHHHHH-
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHH--------------HcCCHHHHh---hch--------hhhHHHHHH-
Confidence 23566 9999873 4577787732 122222221 122 345666664
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHH-HHHHHHHHHhc-C-CceEEEEecCchhhhh-cCEEEEEeCCEEE--EecCh
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATD-NLIQHTLGQHF-S-DCTVITIAHRITSVID-SDMVLLLSYGLIE--EFDSP 461 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~-~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~--~~g~~ 461 (489)
+++|++++.+|+++||||||+|+|+... ..++..+..+. + ++|+|++||+++.+.. +|++.++ +|++. +.|+.
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 9999999999999999999999998864 45566666543 3 7899999999999886 8999886 58877 45543
No 92
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.82 E-value=2.1e-21 Score=192.37 Aligned_cols=181 Identities=12% Similarity=0.108 Sum_probs=119.0
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-eEEECCEeCCCCChHHhhccceEEcCCCccCccchhh
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 336 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 336 (489)
++|+++++.+++|++++|+||||||||||++.|+|...|.+| .|.+.+.+ .+.+.+++.+..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 379999999999999999999999999999999999999878 77664433 3455666655555544322 1222
Q ss_pred hcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchH-HHHHHHHHHhccCCCEEEEeCCCC---C---
Q 011281 337 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ-RQLVCLARVLLKKSKVLVLDEATA---S--- 409 (489)
Q Consensus 337 Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq-~Qrl~laRall~~~~illlDEpts---~--- 409 (489)
++..+ ..++++..++.+. .+...+ + .+.+....+|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~-~~~~~~~~~~~~~-----~l~~~~--l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKRE-IIENGKFDQWFDE-----LFGNDT--F--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH-HHHHTHHHHHHHH-----HHSSSC--E--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccC-CCCHHHHHHHHHH-----HhccCC--E--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 33211 1122233332222 111111 1 1222234578898 77777 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHHhc--CCceEEEEecCc--h--------------------hhhh-cCEEEEEeCCEE
Q 011281 410 VDT-ATDNLIQHTLGQHF--SDCTVITIAHRI--T--------------------SVID-SDMVLLLSYGLI 455 (489)
Q Consensus 410 lD~-~~~~~i~~~l~~~~--~~~t~i~itH~~--~--------------------~~~~-~d~i~~l~~G~i 455 (489)
+|. .....+.+.|+++. .+.|||++||.. + .+.. ||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 45567777777653 378999999995 4 5554 999999999875
No 93
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.82 E-value=9.8e-21 Score=209.86 Aligned_cols=183 Identities=19% Similarity=0.180 Sum_probs=131.8
Q ss_pred CCCCcHHHHHHHHhcC---------CCCCCceEEECCEeCCC---CChHHhhccceEEcCCCccCccchhhhcCCCCCCc
Q 011281 278 RTGSGKSTLIQTLFRI---------VEPTAGLIAIDGIDISS---IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA 345 (489)
Q Consensus 278 ~sGsGKSTl~~~l~g~---------~~~~~G~i~~~g~~~~~---~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~ 345 (489)
.|..||+++.+.+... |.|..|+|.++|+++.+ ++..++..-+.-++|++..+. + +...+.....
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~~~~ 346 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRPEQA 346 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCSSHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcchhhH
Confidence 4567899998887663 56789999999999877 445554444444555444222 2 1222221110
Q ss_pred ------HHHHHH---HHHHcCCcHHHHhccccccch-hhcCCCCCCchHHHHHHHHHHhccCC--CEEEEeCCCCCCCHH
Q 011281 346 ------DEEIWE---ALDKCQLGNEVRKNEGKLESR-VTENGENWSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTA 413 (489)
Q Consensus 346 ------~~~~~~---~~~~~~l~~~i~~l~~gldt~-vge~G~~LSgGq~Qrl~laRall~~~--~illlDEpts~lD~~ 413 (489)
.+++.+ .+..+|+ +.. ++....+|||||||||+||++|..+| .+|||||||++||+.
T Consensus 347 ~i~~~i~~ei~~rl~~L~~vGL-----------~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~ 415 (842)
T 2vf7_A 347 IALQRMAADLVKRLDVLLHLGL-----------GYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPA 415 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-----------TTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGG
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-----------CcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHH
Confidence 011111 2333333 321 34445679999999999999999999 599999999999999
Q ss_pred HHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEE------eCCEEEEecChhHHhhcCCChHHH
Q 011281 414 TDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL------SYGLIEEFDSPTRLLENKSSSFAQ 474 (489)
Q Consensus 414 ~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~el~~~~~~~~~~ 474 (489)
..+.+.+.++++. .|.|||+|+||++.+..||+|++| ++|+++..|+++++.+.+......
T Consensus 416 ~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~~~~~ 483 (842)
T 2vf7_A 416 DTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHVPESQTGQ 483 (842)
T ss_dssp GHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGCTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhchHHHHHH
Confidence 9999999988765 489999999999999889999999 799999999999998764444433
No 94
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.82 E-value=2.3e-23 Score=194.68 Aligned_cols=158 Identities=17% Similarity=0.178 Sum_probs=123.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC-------------CCCceEEECCEeCCCCChHHhhccceEEcCCCccCccch
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVE-------------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSV 334 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti 334 (489)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++..++.+.+++.+ +|++++|.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 78897 589888888888888876 79999999999
Q ss_pred hhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH-HhccCCCEEEEeCCCCCCCHH
Q 011281 335 HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR-VLLKKSKVLVLDEATASVDTA 413 (489)
Q Consensus 335 ~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR-all~~~~illlDEpts~lD~~ 413 (489)
++|+ ++ .++++++++++.....-+ +-.++|+++.... ++ .|| +++.+|++++|||+|+++|.+
T Consensus 77 ~~n~-~g--~~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 77 SGNL-YG--TSKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp TTEE-EE--EEHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred cCcc-CC--CCHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 9998 43 367888888876432211 2346677766432 12 567 899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeC
Q 011281 414 TDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 452 (489)
Q Consensus 414 ~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 452 (489)
+++.|.+.|....++ +.++| +. ..+|+|+++++
T Consensus 141 ~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 141 TEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 999999998766443 35677 34 77999998875
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=3.9e-20 Score=197.66 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=112.4
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcC-CCC
Q 011281 264 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD-PLE 342 (489)
Q Consensus 264 ~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~-~~~ 342 (489)
+..+++|++++|+||||||||||++.++|...|. |+ +.+.+++|++. .++.++.. ++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence 4589999999999999999999999999998875 53 01345566552 13333321 11
Q ss_pred CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHH-----HHHH
Q 011281 343 EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA-----TDNL 417 (489)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~-----~~~~ 417 (489)
.+.++ +...++.++ .......|||||+||+++||++..+|+++|+| ||++||.. ..+.
T Consensus 333 -~~~~~----~~~~g~~~~-----------~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~ 395 (525)
T 1tf7_A 333 -MDFEE----MERQNLLKI-----------VCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQF 395 (525)
T ss_dssp -CCHHH----HHHTTSEEE-----------CCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHH
T ss_pred -CCHHH----HHhCCCEEE-----------EEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHH
Confidence 11111 122233222 22233568999999999999999999999999 99999998 8888
Q ss_pred HHHHHHHhc-CCceEEEEecCc----------hhhhh-cCEEEEEeCCE
Q 011281 418 IQHTLGQHF-SDCTVITIAHRI----------TSVID-SDMVLLLSYGL 454 (489)
Q Consensus 418 i~~~l~~~~-~~~t~i~itH~~----------~~~~~-~d~i~~l~~G~ 454 (489)
+.+.++.+. .+.|+|+|+|+. ..+.. ||+|++|++|+
T Consensus 396 i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 396 VIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 888776654 588999999998 66665 99999999986
No 96
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.79 E-value=4.6e-22 Score=191.88 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=105.3
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhh
Q 011281 257 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 336 (489)
Q Consensus 257 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 336 (489)
.++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.+++++|++....-|..+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 35899999999999999999999999999999999976 655554 3577899999997333348888
Q ss_pred hcCCC-------C--CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCC
Q 011281 337 NLDPL-------E--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 407 (489)
Q Consensus 337 Ni~~~-------~--~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpt 407 (489)
|+.+. . ..+.+++.+.++. +.++.+..+ ..||+||+||+++ ++++.+|+++|+|||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~ 143 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGIL 143 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECTT
T ss_pred hhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCcc
Confidence 76421 1 1123333444332 222333333 4589999999988 6889999999999998
Q ss_pred CCCCHHHHHHHHHHHHHhcCCceEEEEecCchhh-hh-cCEEEEEeCCEEEEecChhHHhh
Q 011281 408 ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV-ID-SDMVLLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 408 s~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~-~~-~d~i~~l~~G~i~~~g~~~el~~ 466 (489)
...|.. +.+. .+.|++++||....+ +. ++++ ++|+ +.+++.+
T Consensus 144 ~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 144 VFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred ccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 887764 2222 378999999984444 44 4444 6675 5666654
No 97
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.79 E-value=2.5e-21 Score=186.10 Aligned_cols=162 Identities=14% Similarity=0.067 Sum_probs=101.4
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHh--cCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCcc-chhhhcCCCC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLF--RIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLE 342 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~--g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~ 342 (489)
.+++|++++|+||||||||||+++|+ |+.++.+|.+.+++.+... .....++.+++++|+...+.. ++.++.....
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASFGWDFEKYEKEGKIAIVDGVSSVV 104 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTTTCCHHHHHHTTSEEEEC------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHcCCChHHHhhcCCEEEEEcccccc
Confidence 68999999999999999999999999 7656777888887743211 122334568888887654432 4444432211
Q ss_pred CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCC-----HHHHHH
Q 011281 343 EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD-----TATDNL 417 (489)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD-----~~~~~~ 417 (489)
.....+....+. ..+-++.++...+..-..+|++++|||||+++| +...+.
T Consensus 105 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~ 160 (251)
T 2ehv_A 105 GLPSEEKFVLED------------------------RFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREV 160 (251)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHH
T ss_pred ccccccceeccC------------------------cccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHH
Confidence 100000000000 012334333344444457999999999999997 556666
Q ss_pred HHHHHHHhc-CCceEEEEecCchhh---------h-hc-CEEEEEeC
Q 011281 418 IQHTLGQHF-SDCTVITIAHRITSV---------I-DS-DMVLLLSY 452 (489)
Q Consensus 418 i~~~l~~~~-~~~t~i~itH~~~~~---------~-~~-d~i~~l~~ 452 (489)
+.+.++.+. .++|+|++||+++.+ . .| |+|++|++
T Consensus 161 l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 161 LLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 777776553 489999999999887 3 47 99999953
No 98
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.79 E-value=6.5e-20 Score=203.73 Aligned_cols=97 Identities=19% Similarity=0.275 Sum_probs=86.9
Q ss_pred hcCCCCCCchHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEE
Q 011281 374 TENGENWSMGQRQLVCLARVLLKKS--KVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLL 450 (489)
Q Consensus 374 ge~G~~LSgGq~Qrl~laRall~~~--~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l 450 (489)
.....+|||||||||+||++|..+| ++|||||||++||+...+.+.+.|+++. .|.|||+|+||++.+..||+|++|
T Consensus 499 dR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~L 578 (972)
T 2r6f_A 499 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDI 578 (972)
T ss_dssp SSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEe
Confidence 3444579999999999999999985 9999999999999999999999998765 589999999999999899999999
Q ss_pred ------eCCEEEEecChhHHhhcCCC
Q 011281 451 ------SYGLIEEFDSPTRLLENKSS 470 (489)
Q Consensus 451 ------~~G~i~~~g~~~el~~~~~~ 470 (489)
++|+|+..|+++++.+.+..
T Consensus 579 gpgaG~~gG~iv~~G~~~e~~~~~~s 604 (972)
T 2r6f_A 579 GPGAGIHGGEVVAAGTPEEVMNDPNS 604 (972)
T ss_dssp CSSSGGGCCSEEEEECTTTTTTCTTC
T ss_pred CCCccCCCCEEEEecCHHHHHhhhHH
Confidence 79999999999999875333
No 99
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.78 E-value=2.7e-21 Score=197.46 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=70.3
Q ss_pred ceeeeeEEeeC--CCEEEEECCCCCcHHHHHHHHhcCCCCCC----ceEEE----CCEeCCCCChHHhhccceEEcCCCc
Q 011281 259 VLRGLTCTFLG--GMKTGIVGRTGSGKSTLIQTLFRIVEPTA----GLIAI----DGIDISSIGLHDLRSRLSIIPQDPT 328 (489)
Q Consensus 259 ~l~~i~l~i~~--g~~~~ivG~sGsGKSTl~~~l~g~~~~~~----G~i~~----~g~~~~~~~~~~~r~~i~~v~Q~~~ 328 (489)
+.+.|++++++ |++++|+||||||||||+++|+|+++|++ |+|.+ +|.++ .++..++ +.|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 99987 35555 4555556 56999999999
Q ss_pred cCccchhhhcCCCC
Q 011281 329 MFEGSVHNNLDPLE 342 (489)
Q Consensus 329 lf~~ti~~Ni~~~~ 342 (489)
+|..|+++|+.+..
T Consensus 235 ~~~~t~~~nl~~~~ 248 (365)
T 1lw7_A 235 DYAVRHSHKIAFID 248 (365)
T ss_dssp HHHHHHCSSEEEES
T ss_pred HHHHhccCCEEEEe
Confidence 99999999998753
No 100
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.78 E-value=3.9e-19 Score=157.84 Aligned_cols=88 Identities=23% Similarity=0.185 Sum_probs=74.7
Q ss_pred cccchh-----hcCCCCCCchHHHHHHHH------HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEe
Q 011281 368 KLESRV-----TENGENWSMGQRQLVCLA------RVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIA 435 (489)
Q Consensus 368 gldt~v-----ge~G~~LSgGq~Qrl~la------Rall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~it 435 (489)
++++.+ .....+||||||||++|| ||++.+|++++|||||++||+.+.+.+.+.+.+.. .++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 566654 234568999999999876 99999999999999999999999999999998764 478999999
Q ss_pred cCchhhhhcCEEEEE--eCCEE
Q 011281 436 HRITSVIDSDMVLLL--SYGLI 455 (489)
Q Consensus 436 H~~~~~~~~d~i~~l--~~G~i 455 (489)
|+.+....||++++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999766669999999 56643
No 101
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.78 E-value=1.4e-19 Score=188.64 Aligned_cols=73 Identities=26% Similarity=0.301 Sum_probs=67.1
Q ss_pred CCCchHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEEEe
Q 011281 379 NWSMGQRQLVCLARVLL----KKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLLLS 451 (489)
Q Consensus 379 ~LSgGq~Qrl~laRall----~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l~ 451 (489)
.||||||||++||++|+ ++||++||||||++||+.....+.+.|.... ++.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 39999999999999999 6899999999999999999999999998764 3679999999988888899999985
No 102
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.78 E-value=6.9e-20 Score=173.75 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=101.3
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-------CCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhc
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-------TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL 338 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni 338 (489)
-+++|++++|+||||||||||+++|+|.+.| ..|.+.+++.+. .. ++.+++++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999996655 444777777542 11 2357777888777777888888
Q ss_pred CCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc-------cCCCEEEEeCCCCCCC
Q 011281 339 DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL-------KKSKVLVLDEATASVD 411 (489)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall-------~~~~illlDEpts~lD 411 (489)
.+....... .+++.+..+++++ .+|+++++||||+.+|
T Consensus 95 ~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARAFNSN-----------------------------------HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEECCSHH-----------------------------------HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEecCChH-----------------------------------HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 664322211 1222233333333 4899999999999999
Q ss_pred HH-------HH-----HHHHHHHHHhc--CCceEEEEecCc----hhhhh-cCEEEEEeCCE
Q 011281 412 TA-------TD-----NLIQHTLGQHF--SDCTVITIAHRI----TSVID-SDMVLLLSYGL 454 (489)
Q Consensus 412 ~~-------~~-----~~i~~~l~~~~--~~~t~i~itH~~----~~~~~-~d~i~~l~~G~ 454 (489)
++ .+ ..+.+.+.+.. .+.|+|+|||.. ..+.. ||++++|++|+
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 84 21 24555555432 378999999944 44776 89999998763
No 103
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.78 E-value=1.7e-19 Score=202.37 Aligned_cols=165 Identities=13% Similarity=0.091 Sum_probs=116.1
Q ss_pred cEEEEEEEEEECC---CCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHH--------hcCCCCCCceEEECCEeCCC
Q 011281 242 EVDIHGLQVRYAP---HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTL--------FRIVEPTAGLIAIDGIDISS 310 (489)
Q Consensus 242 ~i~~~~v~~~y~~---~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l--------~g~~~~~~G~i~~~g~~~~~ 310 (489)
.+.+++....+-. +.+.+++|++|++++|++++|+|||||||||++|++ .|.+-|.++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence 4777765432211 124589999999999999999999999999999999 66555543321
Q ss_pred CChHHhhccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 311 IGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 311 ~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
++++ +.+ +...++.+.+ ...+|+|++++..+
T Consensus 702 ---------~~~~------------d~i--------------~~~ig~~d~l--------------~~~lStf~~e~~~~ 732 (934)
T 3thx_A 702 ---------VSIV------------DCI--------------LARVGAGDSQ--------------LKGVSTFMAEMLET 732 (934)
T ss_dssp ---------EECC------------SEE--------------EEECC-----------------------CHHHHHHHHH
T ss_pred ---------chHH------------HHH--------------HHhcCchhhH--------------HHhHhhhHHHHHHH
Confidence 0000 000 0011111111 12358888888888
Q ss_pred HHHh--ccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 011281 391 ARVL--LKKSKVLVLDEATASVDTATDNLI-QHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRL 464 (489)
Q Consensus 391 aRal--l~~~~illlDEpts~lD~~~~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el 464 (489)
|+++ +.+|+++||||||+|+|+.....+ ...+..+. .++|+|++||+.+....||++..+++|++...++.+++
T Consensus 733 a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 733 ASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 8888 999999999999999999877766 44444432 37899999999988888999999999999887766654
No 104
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.78 E-value=5.3e-20 Score=203.01 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=111.3
Q ss_pred ccEEEEEEEEEECC---CCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCceEEECCEeCCCCChHHh
Q 011281 241 GEVDIHGLQVRYAP---HLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-PTAGLIAIDGIDISSIGLHDL 316 (489)
Q Consensus 241 ~~i~~~~v~~~y~~---~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~ 316 (489)
+.+++++. ++|- ....+++|+||+ |++++|+|||||||||++|+++|+.. |+.|.+. + ..
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a~ 612 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------AE 612 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------SS
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------hh
Confidence 35788877 3443 234689999999 99999999999999999999999874 6778652 1 12
Q ss_pred hccceEEcCCCccCcc-chhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh-
Q 011281 317 RSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL- 394 (489)
Q Consensus 317 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal- 394 (489)
+..+++++| +|.. ++.+|+.. .+|+|++|++.+|+++
T Consensus 613 ~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~ 651 (765)
T 1ewq_A 613 EAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILK 651 (765)
T ss_dssp EEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHH
T ss_pred ccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHH
Confidence 456888877 5543 66666532 1489999999999999
Q ss_pred -ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHhcCCceEEEEecCchhhhhc
Q 011281 395 -LKKSKVLVLDEA---TASVDTATD-NLIQHTLGQHFSDCTVITIAHRITSVIDS 444 (489)
Q Consensus 395 -l~~~~illlDEp---ts~lD~~~~-~~i~~~l~~~~~~~t~i~itH~~~~~~~~ 444 (489)
+.+|+++||||| |+++|+.+. ..+.+.+.+ .+.|+|++||+.+....+
T Consensus 652 ~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 652 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred hccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999999999999 999998875 578888876 478999999998876554
No 105
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.78 E-value=1e-20 Score=177.05 Aligned_cols=169 Identities=16% Similarity=0.191 Sum_probs=105.0
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCCceEEE-------CCEeCC-
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV-----EPTAGLIAI-------DGIDIS- 309 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~-----~~~~G~i~~-------~g~~~~- 309 (489)
|+++|++|.|+. +++++ |++++|.+++|+|++|||||||++.|+|.. .|+.|.+.+ ++..+.
T Consensus 4 l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 4 LNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp -------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 688999999962 47887 899999999999999999999999999998 888888764 223222
Q ss_pred --CCC--------hHHhhccceEEcCCCccCcc-chhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCC
Q 011281 310 --SIG--------LHDLRSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGE 378 (489)
Q Consensus 310 --~~~--------~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~ 378 (489)
.+. .+.+++.++++.|+...+++ ++..++.......++++.+.++..++... .++....
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~----------~v~nK~D 148 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVL----------VLLTKAD 148 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEE----------EEEECGG
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeE----------EEEeccc
Confidence 111 12345555666654433333 44444433222223344444444332211 1233333
Q ss_pred CCCchHHHH-HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 011281 379 NWSMGQRQL-VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF 426 (489)
Q Consensus 379 ~LSgGq~Qr-l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~ 426 (489)
.+|+||+|| +..+|+++++|+++++|||||++|+...+.+++.|.+..
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 579999999 899999999999999999999999999999999887654
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.78 E-value=1.6e-20 Score=190.36 Aligned_cols=166 Identities=22% Similarity=0.148 Sum_probs=117.8
Q ss_pred ceeee-eEEeeCCCEEEEECCCCCcHHHHHHHHhcCC--CCCC----ce-EEECCEeCCCCChHHhhccceEEcCCCccC
Q 011281 259 VLRGL-TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV--EPTA----GL-IAIDGIDISSIGLHDLRSRLSIIPQDPTMF 330 (489)
Q Consensus 259 ~l~~i-~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~--~~~~----G~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 330 (489)
.|+.+ .+.+++|++++|+||||||||||++.+++.+ +|+. |. |++++.+. + .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~----~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F----RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C----CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C----CHHHHHHHHHHcCCC
Confidence 46665 6899999999999999999999999999998 6666 68 89998654 1 245788899999888
Q ss_pred ccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc-------cCCCEEEE
Q 011281 331 EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL-------KKSKVLVL 403 (489)
Q Consensus 331 ~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall-------~~~~illl 403 (489)
..++.+|+.+....+ |++|+|++.++++++ .+|+++|+
T Consensus 193 ~~~v~~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 193 PDEVLKHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HHHHGGGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HHHHhhCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 889999987643222 345666677777766 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHhc--CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 404 DEATASVDTAT------------DNLIQHTLGQHF--SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 404 DEpts~lD~~~------------~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
||||+.+|++. ...+...|.++. .+.|+|+++|....... ++.+.+..+|++++++.+..|.
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 99999999862 234444454432 47899999999875543 3456777889888888776664
No 107
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.78 E-value=5.6e-22 Score=186.37 Aligned_cols=140 Identities=19% Similarity=0.201 Sum_probs=108.4
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCcc---chhhhcCC--
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG---SVHNNLDP-- 340 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~---ti~~Ni~~-- 340 (489)
+.++|++++|+||||||||||+++|+|++.| .+++++|++++++. |+++|..+
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 3578999999999999999999999999865 58999999988743 66666433
Q ss_pred CC--CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchH----HHHHHHHHHhccCCCEEEEeCCCCC-----
Q 011281 341 LE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQ----RQLVCLARVLLKKSKVLVLDEATAS----- 409 (489)
Q Consensus 341 ~~--~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq----~Qrl~laRall~~~~illlDEpts~----- 409 (489)
.. ..+.+++.++++..++.+.+.. | .+ .+|+|| +||+++||+++.+|+++++||||++
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~---------~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~ 128 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQALLRGLPVEM-P-VY---------DFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLK 128 (211)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEE-C-CE---------ETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEE
T ss_pred CChhhhhHHHHHHHHHHHHcCCCcCC-C-cc---------cCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEE
Confidence 21 2345677888877766554432 2 23 356664 5799999999999999999999999
Q ss_pred --CCHHHHHHHHHHHHHh--cCCceEEEEecCc
Q 011281 410 --VDTATDNLIQHTLGQH--FSDCTVITIAHRI 438 (489)
Q Consensus 410 --lD~~~~~~i~~~l~~~--~~~~t~i~itH~~ 438 (489)
||+..+.++.+.+.+. ..|+|++.++|+.
T Consensus 129 i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 129 VFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999998888888764 3588999999984
No 108
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.78 E-value=2.6e-21 Score=209.81 Aligned_cols=190 Identities=11% Similarity=0.196 Sum_probs=121.7
Q ss_pred cEEEEEEEEEECCCCCcceeee----------eEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCC
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGL----------TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAIDGIDISS 310 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i----------~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-~~G~i~~~g~~~~~ 310 (489)
.+.++|+++.|+....++++.+ +++++. ++|+||||||||||+++|+|++.| ++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 4789999999975433344433 366654 999999999999999999999988 89999999998632
Q ss_pred C---ChHHhhccceEEcCCCccCcc-chhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 311 I---GLHDLRSRLSIIPQDPTMFEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 311 ~---~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
. ....+|+.++|++|++.+++. |+++|+... .... . ..+..+| ++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~-----------~~~~------~-----------~~~~~~s---~~ 135 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA-----------QNAI------A-----------GEGMGIS---HE 135 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-----------HHHH------H-----------CSSSCCC---SC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHH-----------HHHh------c-----------CCccccc---hH
Confidence 1 134678899999999988764 899998421 1110 0 0011112 24
Q ss_pred HHHHHHHhccCCCEEEEeCC------CCCCCHHHHHHHHHHHHHhc---CCceEEEEecCchhh--------hh-----c
Q 011281 387 LVCLARVLLKKSKVLVLDEA------TASVDTATDNLIQHTLGQHF---SDCTVITIAHRITSV--------ID-----S 444 (489)
Q Consensus 387 rl~laRall~~~~illlDEp------ts~lD~~~~~~i~~~l~~~~---~~~t~i~itH~~~~~--------~~-----~ 444 (489)
++.++.+...+|+++++||| |++||+...+.+.+.+..+. .+.++++++|++... .. .
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~ 215 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 215 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCC
Confidence 45555666678999999999 99999999999999998853 245788899997633 11 3
Q ss_pred CEEEEEeCCEEEEecChhHHh
Q 011281 445 DMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 445 d~i~~l~~G~i~~~g~~~el~ 465 (489)
..|+|+.++.+++.|+.+++.
T Consensus 216 rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 216 RTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SEEEEEECGGGSSSSSTTCCC
T ss_pred ceEEEecchhhcCcccHHHHH
Confidence 568999999998888865543
No 109
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.76 E-value=1.6e-18 Score=193.26 Aligned_cols=100 Identities=22% Similarity=0.233 Sum_probs=88.8
Q ss_pred hhcCCCCCCchHHHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEecCchhhhhcCEEEE
Q 011281 373 VTENGENWSMGQRQLVCLARVLLKK--SKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVITIAHRITSVIDSDMVLL 449 (489)
Q Consensus 373 vge~G~~LSgGq~Qrl~laRall~~--~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~ 449 (489)
+.....+|||||||||+||++|..+ |++|||||||++||+...+.+.+.|+++. .|+|||+|+||++.+..||+|++
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~ 594 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVD 594 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEE
T ss_pred cCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEE
Confidence 3445567999999999999999998 58999999999999999999999998764 58999999999999999999999
Q ss_pred E------eCCEEEEecChhHHhhcCCChH
Q 011281 450 L------SYGLIEEFDSPTRLLENKSSSF 472 (489)
Q Consensus 450 l------~~G~i~~~g~~~el~~~~~~~~ 472 (489)
| ++|+++..|+++++.+.+....
T Consensus 595 Lgp~aG~~gG~iv~~G~~~e~~~~~~~lt 623 (993)
T 2ygr_A 595 IGPGAGEHGGRIVHSGPYDELLRNKDSIT 623 (993)
T ss_dssp ECSSSGGGCCSCCEEECHHHHHHCTTCHH
T ss_pred ecCccccCCCEEEEeeCHHHhhhhhHHHH
Confidence 9 7999999999999998644433
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.76 E-value=1.6e-19 Score=183.02 Aligned_cols=146 Identities=20% Similarity=0.178 Sum_probs=106.1
Q ss_pred EEEEEEECCCCCcceeeeeE-------EeeCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CceEEECCEeCCCCChHHhh
Q 011281 246 HGLQVRYAPHLPLVLRGLTC-------TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPT-AGLIAIDGIDISSIGLHDLR 317 (489)
Q Consensus 246 ~~v~~~y~~~~~~~l~~i~l-------~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~r 317 (489)
.+++++|.+...+.|+++.+ ...+|+.++|+||||||||||+++|+|+++|+ +|.|...+.++ ++. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 56778886555567777776 77899999999999999999999999999987 57765444333 221 22
Q ss_pred ccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC
Q 011281 318 SRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK 397 (489)
Q Consensus 318 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~ 397 (489)
...++++|.+.-.. .. +-.+ +|||||..+
T Consensus 168 ~~~~~v~q~~~~~~-----~~------------------------------------------~~~~----~La~aL~~~ 196 (356)
T 3jvv_A 168 SKKCLVNQREVHRD-----TL------------------------------------------GFSE----ALRSALRED 196 (356)
T ss_dssp CSSSEEEEEEBTTT-----BS------------------------------------------CHHH----HHHHHTTSC
T ss_pred ccccceeeeeeccc-----cC------------------------------------------CHHH----HHHHHhhhC
Confidence 33455555432111 00 0000 999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeC
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSY 452 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 452 (489)
|+++++|||| |+++.+.+.+. ...|.|+++++|..+.+..+||+++|..
T Consensus 197 PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 197 PDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp CSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred cCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcC
Confidence 9999999999 77775554444 3358999999999999977999987744
No 111
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.75 E-value=8.2e-20 Score=181.50 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=80.6
Q ss_pred EEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCceEEECCEeCCCCChHHhhccceEEc
Q 011281 246 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI-VEPTAGLIAIDGIDISSIGLHDLRSRLSIIP 324 (489)
Q Consensus 246 ~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 324 (489)
+||++.|++. .++++++|+| +|+||||||||||++.|+|. ..|++| |.++|.++.. .. . ++.+++++
T Consensus 2 ~~l~~~~~~~--~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECCE--EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEEe
Confidence 4788888643 5899999998 99999999999999999998 889999 8888877643 11 1 35689999
Q ss_pred CCCccCc-cchhhhcCCCCCCcH-HHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEE
Q 011281 325 QDPTMFE-GSVHNNLDPLEEYAD-EEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 402 (489)
Q Consensus 325 Q~~~lf~-~ti~~Ni~~~~~~~~-~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ill 402 (489)
|++.++. -|+.|+..++..... ++.....+. +.+. ++..+ .++|||||||+++|||++ +++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~-------~~~~~----~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQ-------FERYL----HDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp C---CCEEEEEEEEC-----------CTTHHHH--HHHH-------HHHHH----HHHTSSCCTTCCCCCCCE----EEE
T ss_pred cCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHH-------HHHHH----HHhCHHhhhhhhhhhhhh----eee
Confidence 9877654 489999877432211 111111111 1111 11222 236999999999999986 999
Q ss_pred EeCCCCC-CCHHHHHHHHHHHHHhcCCceEEEEecCchh
Q 011281 403 LDEATAS-VDTATDNLIQHTLGQHFSDCTVITIAHRITS 440 (489)
Q Consensus 403 lDEpts~-lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 440 (489)
+||||++ ||+... .+++.+.. ..+.++|+.+|++..
T Consensus 133 ldePt~~~Ld~~~~-~~l~~l~~-~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 133 FISPFGHGLKPLDV-AFMKAIHN-KVNIVPVIAKADTLT 169 (301)
T ss_dssp EECSSSSSCCHHHH-HHHHHHTT-TSCEEEEECCGGGSC
T ss_pred eecCcccCCCHHHH-HHHHHHHh-cCCEEEEEEeCCCCC
Confidence 9999985 999864 23333321 125688888999753
No 112
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.74 E-value=8e-19 Score=174.31 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=101.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh----HHh--hccceEEcCCCccCcc-chhhhcCCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL----HDL--RSRLSIIPQDPTMFEG-SVHNNLDPL 341 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~--r~~i~~v~Q~~~lf~~-ti~~Ni~~~ 341 (489)
+|++++|+|||||||||++++|+|+++|++|+|.++|.|+..... ..+ |..+++++|++.+++. |+++|+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999866541 223 4579999999987764 788887421
Q ss_pred CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHH
Q 011281 342 EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATASVDTATDNLIQ 419 (489)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~--illlDEpts~lD~~~~~~i~ 419 (489)
.. .+.+..+-..+...+. ....++..++||.++|||+..+|+ ++.|| |+++.| +.
T Consensus 181 -----------~~-~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~ 237 (304)
T 1rj9_A 181 -----------KA-RGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------GL 237 (304)
T ss_dssp -----------HH-HTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HH
T ss_pred -----------Hh-CCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HH
Confidence 00 0111111111111110 001135566999999999999999 45566 455443 33
Q ss_pred HHHHHhc--CCceEEEEecCchhh
Q 011281 420 HTLGQHF--SDCTVITIAHRITSV 441 (489)
Q Consensus 420 ~~l~~~~--~~~t~i~itH~~~~~ 441 (489)
+.+.... .+.|+|++||.....
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSSC
T ss_pred HHHHHHHHHcCCcEEEEECCcccc
Confidence 3333321 278999999986553
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=3.4e-19 Score=183.99 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=99.3
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccce
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLS 321 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 321 (489)
.|.++||+++|++. .++++++|+| +|+||||||||||+++|+|...|..| .+|.++.... ...++.++
T Consensus 11 ~l~~~~l~~~y~~~--~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i~ 78 (418)
T 2qag_C 11 YVGFANLPNQVYRK--SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQSK 78 (418)
T ss_dssp ----CCCCCCTTTT--TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEE
T ss_pred cEEEEecceeECCE--EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeEE
Confidence 48899999999653 5899999998 99999999999999999999886555 2333332111 11235689
Q ss_pred EEcCCCccCc-cchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC-
Q 011281 322 IIPQDPTMFE-GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK- 399 (489)
Q Consensus 322 ~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~- 399 (489)
+++|++.++. .|+.||+.++......+.++.+ .+++. .+ ++.+++||++||||++++|+
T Consensus 79 ~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i-----~~~i~---~~-----------~~~~l~qr~~IaRal~~d~~~ 139 (418)
T 2qag_C 79 VLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV-----IDYID---SK-----------FEDYLNAESRVNRRQMPDNRV 139 (418)
T ss_dssp CC------CEEEEEEECC-----------CHHH-----HHHHH---HH-----------HHHHTTTSCC-CCCCCCCC-C
T ss_pred EEEecCCcccceeeeechhhhhhccchhhHHHH-----HHHHH---HH-----------HHHHHHHHHHHHHHhccCCCe
Confidence 9999988774 5999999876433222111111 11222 12 24566789999999999999
Q ss_pred --EEEEeCCC-CCCCHHHHHHHHHHHHHhcCCceEEEEecCchhh
Q 011281 400 --VLVLDEAT-ASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV 441 (489)
Q Consensus 400 --illlDEpt-s~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 441 (489)
++++|||| ++||+... .+++.+ ..+.++|+|.|..+.+
T Consensus 140 ~vlL~ldePt~~~L~~~d~-~~lk~L---~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 140 QCCLYFIAPSGHGLKPLDI-EFMKRL---HEKVNIIPLIAKADTL 180 (418)
T ss_dssp CEEEEECCC-CCSCCHHHH-HHHHHH---TTTSEEEEEEESTTSS
T ss_pred eEEEEEecCcccCCCHHHH-HHHHHH---hccCcEEEEEEcccCc
Confidence 99999999 69998763 333333 3467899998887654
No 114
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.71 E-value=4e-18 Score=190.78 Aligned_cols=158 Identities=13% Similarity=0.076 Sum_probs=102.5
Q ss_pred cEEEEEEEEEE-----CCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh
Q 011281 242 EVDIHGLQVRY-----APHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL 316 (489)
Q Consensus 242 ~i~~~~v~~~y-----~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 316 (489)
.+.+++..--. +.+.+.+++|++|++++|++++|+|||||||||++|+++++.-.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------- 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------- 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence 46666653221 11234689999999999999999999999999999999753210
Q ss_pred hccceEEcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhcc
Q 011281 317 RSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLK 396 (489)
Q Consensus 317 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~ 396 (489)
.+.-.++|++..-+ .+.+++ +...++.+.+ ..+-+.+|+|++|+..++|+ +.
T Consensus 700 aq~g~~vpa~~~~i--~~~d~i--------------~~~ig~~d~l-----------~~~~stfs~em~~~~~il~~-a~ 751 (918)
T 3thx_B 700 AQIGSYVPAEEATI--GIVDGI--------------FTRMGAADNI-----------YKGRSTFMEELTDTAEIIRK-AT 751 (918)
T ss_dssp HHHTCCBSSSEEEE--ECCSEE--------------EEEC---------------------CCHHHHHHHHHHHHHH-CC
T ss_pred hhcCccccchhhhh--hHHHHH--------------HHhCChHHHH-----------HHhHHHhhHHHHHHHHHHHh-cc
Confidence 11112333322100 011111 0111111111 11224579999999999999 89
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HHHHHh--cCCceEEEEecCchhhhhcCEE
Q 011281 397 KSKVLVLDEATASVDTATDNLIQ-HTLGQH--FSDCTVITIAHRITSVIDSDMV 447 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~-~~l~~~--~~~~t~i~itH~~~~~~~~d~i 447 (489)
+|+++||||||+|+|+.....+. ..+..+ ..++|+|++||+++....+|+.
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 99999999999999999887776 444443 2488999999999887766543
No 115
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.71 E-value=3e-17 Score=149.44 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=70.6
Q ss_pred CCCCCchHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEE--
Q 011281 377 GENWSMGQRQLVCLARVLL----KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL-- 450 (489)
Q Consensus 377 G~~LSgGq~Qrl~laRall----~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l-- 450 (489)
...||||||||++|||+++ ++|+++||||||++||+.+.+.+.+.|++..++.++|+|||+...+..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3569999999999999996 5679999999999999999999999998887778999999999988889999855
Q ss_pred eCCEE
Q 011281 451 SYGLI 455 (489)
Q Consensus 451 ~~G~i 455 (489)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 57753
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.71 E-value=2.1e-18 Score=163.44 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=105.2
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEeCCCCChHHhhccceEEcCCCccCcc-ch----hhh
Q 011281 265 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SV----HNN 337 (489)
Q Consensus 265 l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti----~~N 337 (489)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+.+. ..++.++|++|++..|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 35789999999999999999999999999986 78999998866532 235679999999988875 55 466
Q ss_pred cCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHH
Q 011281 338 LDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNL 417 (489)
Q Consensus 338 i~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~ 417 (489)
+.+.... +.+ | +++ ++.++..++++||| ||+.....
T Consensus 87 ~~~~~~~------------------------yg~---------~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 87 AEVFGNY------------------------YGT---------S---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp EEETTEE------------------------EEE---------E---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred HHHHhcc------------------------CCC---------C---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 5442110 000 0 111 23344457999999 99999999
Q ss_pred HHHHHHHhcCCceEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 011281 418 IQHTLGQHFSDCTVITIAHRITSVIDSDMVLLLSYGLIEEFDSPTRLLEN 467 (489)
Q Consensus 418 i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 467 (489)
+.+.+. ++.||++++|+++.+.. |+ +..| .++.+++..+
T Consensus 123 i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 123 IRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp HHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred HHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 998775 47899999999998876 43 6667 6788887643
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.70 E-value=2.4e-18 Score=163.13 Aligned_cols=164 Identities=12% Similarity=0.045 Sum_probs=112.1
Q ss_pred cceeeeeE-EeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhc---cceEEcCCCccCccc
Q 011281 258 LVLRGLTC-TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRS---RLSIIPQDPTMFEGS 333 (489)
Q Consensus 258 ~~l~~i~l-~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~---~i~~v~Q~~~lf~~t 333 (489)
+.|+++.. .+++|+.++|+||||||||||++.+++...+.+|.+.+.+.+. +.+.+++ .+++.+|+...
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE---- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh----
Confidence 36888887 8999999999999999999999999998888888888866443 3333332 23443332211
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCC--EEEEeCCCCCC-
Q 011281 334 VHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSK--VLVLDEATASV- 410 (489)
Q Consensus 334 i~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~--illlDEpts~l- 410 (489)
+++...+..... .+ +. .+- ...|.+|.++...+.+...+|+ ++++||||+.+
T Consensus 83 --~~~~~~~~~~~~--------~~--------~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 83 --KKLIIIDALMKE--------KE--------DQ----WSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp --TTEEEEECCC--------------------CT----TBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred --CCEEEEeccccc--------cC--------ce----eee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence 111110010000 00 00 000 1238899888888877778999 99999999888
Q ss_pred -CHHHHHHHHHHHHHhc--CCceEEEEecCc--------hhhhh-cCEEEEEeCC
Q 011281 411 -DTATDNLIQHTLGQHF--SDCTVITIAHRI--------TSVID-SDMVLLLSYG 453 (489)
Q Consensus 411 -D~~~~~~i~~~l~~~~--~~~t~i~itH~~--------~~~~~-~d~i~~l~~G 453 (489)
|+.....+.+.+++.. .+.|+|+++|.. ..+.. ||+|++|+..
T Consensus 138 ~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 138 DKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9988888888887653 478999999998 44665 9999999864
No 118
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.69 E-value=4.9e-18 Score=174.80 Aligned_cols=178 Identities=14% Similarity=0.129 Sum_probs=114.0
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhcc
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMK--TGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSR 319 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~--~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 319 (489)
.+++++ ++.|++. + |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++....+...++.
T Consensus 16 ~l~~~~-~~~y~~~--~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDSL--P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred eEEEee-EEEECCe--e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 355666 7788643 4 9999999999999 9999999999999999999984 45555544433445668
Q ss_pred ceEEcCCCccCc-cchhhhcCCCCCCcHH------------HHHHHHHHc-CCcHHHHhccccccch-------hhcCCC
Q 011281 320 LSIIPQDPTMFE-GSVHNNLDPLEEYADE------------EIWEALDKC-QLGNEVRKNEGKLESR-------VTENGE 378 (489)
Q Consensus 320 i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~------------~~~~~~~~~-~l~~~i~~l~~gldt~-------vge~G~ 378 (489)
++|++|++.++. -|+.||+.++...+.+ ++.+.+... ++.. .++..-|+. |-+.+.
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r---~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRR---VLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCC---CCCCSCC--CCEEEEEECCCC-
T ss_pred EEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhh---hhcccccccccEEEEEEeCCCC
Confidence 999999998875 5999999987654432 222222222 2110 111122332 234445
Q ss_pred CCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCceEEEEecC
Q 011281 379 NWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ-HF-SDCTVITIAHR 437 (489)
Q Consensus 379 ~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~-~~-~~~t~i~itH~ 437 (489)
.|+..+ +.++++|-.+++++++|+||..|.+.....+.+.+.+ +. .|..++.++.+
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 677665 7999999999999999999999998777777777775 43 46788888854
No 119
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.69 E-value=7.5e-20 Score=186.34 Aligned_cols=148 Identities=14% Similarity=0.090 Sum_probs=108.7
Q ss_pred EEEEEEEE---ECCCCCcce---------eeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 011281 244 DIHGLQVR---YAPHLPLVL---------RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI 311 (489)
Q Consensus 244 ~~~~v~~~---y~~~~~~~l---------~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~ 311 (489)
+|+||+|+ |++..+++| ++++|.+++|+.++|+||||||||||+++|+|+++|++|.|.++|. .++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 78899998 864222355 9999999999999999999999999999999999999999999985 455
Q ss_pred ChHHhhccceEEc-CCCcc---CccchhhhcCCC-CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHH
Q 011281 312 GLHDLRSRLSIIP-QDPTM---FEGSVHNNLDPL-EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQ 386 (489)
Q Consensus 312 ~~~~~r~~i~~v~-Q~~~l---f~~ti~~Ni~~~-~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Q 386 (489)
.....++.+++++ |++.+ +..|+++|+..+ +..++..+...++.+...+++..+|.|++|.+++-+.+-+.+..+
T Consensus 215 ~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~ 294 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFE 294 (361)
T ss_dssp CCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHH
T ss_pred CccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHH
Confidence 5555778899999 88876 677999999643 111221111112223344678888999999998877777888899
Q ss_pred HHHHHHH
Q 011281 387 LVCLARV 393 (489)
Q Consensus 387 rl~laRa 393 (489)
|+.....
T Consensus 295 Rl~~l~~ 301 (361)
T 2gza_A 295 RLALMVL 301 (361)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9987764
No 120
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.65 E-value=1.7e-17 Score=184.10 Aligned_cols=150 Identities=11% Similarity=0.073 Sum_probs=98.7
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEECCEeCCCCChHHhhccceEEcCCCccCcc-ch
Q 011281 257 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SV 334 (489)
Q Consensus 257 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~-~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 334 (489)
..+++|++|+ ++|++++|+|||||||||++|+++|+..+ ..|. .+.. -+..++++.| +|.. ++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa-----~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA-----QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----SEEEECCCCE---EEEEEC-
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----hcccceeHHH---HHhhCCH
Confidence 4589999999 99999999999999999999999997432 2221 1100 1234555544 3332 34
Q ss_pred hhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 011281 335 HNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTAT 414 (489)
Q Consensus 335 ~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~ 414 (489)
.+|+.. ++ +.+|+|+++ ++.+...+.+|+++||||||+|+|+..
T Consensus 660 ~d~l~~---------------------------~~--------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d 703 (800)
T 1wb9_A 660 ADDLAS---------------------------GR--------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYD 703 (800)
T ss_dssp ---------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSH
T ss_pred HHHHHh---------------------------hh--------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhH
Confidence 444321 11 234666654 444555689999999999999999865
Q ss_pred HHHH-HHHHHHhc--CCceEEEEecCchhhhhcCEEEEEeCCEEEE
Q 011281 415 DNLI-QHTLGQHF--SDCTVITIAHRITSVIDSDMVLLLSYGLIEE 457 (489)
Q Consensus 415 ~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 457 (489)
...+ ...+..+. .+.|+|++||+++....||++..+++|++..
T Consensus 704 ~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 704 GLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 4443 44454432 3789999999998887788877777777654
No 121
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.64 E-value=2.8e-19 Score=176.47 Aligned_cols=128 Identities=11% Similarity=0.015 Sum_probs=90.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCC----C
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE----Y 344 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~----~ 344 (489)
++.+++|+||||||||||+++|.+++++. | . . ++.+.+|+||+++|+.++++|+.++.. .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 46899999999999999999999999763 2 0 1 445666799999999999999743210 0
Q ss_pred cHHHHHHHHHHcCCcHHHHhccccccch------hhcCCCCCCchHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHH
Q 011281 345 ADEEIWEALDKCQLGNEVRKNEGKLESR------VTENGENWSMGQRQLVCLA--RVLLKKSKVLVLDEATASVDTAT 414 (489)
Q Consensus 345 ~~~~~~~~~~~~~l~~~i~~l~~gldt~------vge~G~~LSgGq~Qrl~la--Rall~~~~illlDEpts~lD~~~ 414 (489)
......++.+...+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||+|+++|++.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000001111223446778888898764 4556788999999999998 666 999999999999999854
No 122
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.64 E-value=2.7e-18 Score=171.92 Aligned_cols=148 Identities=19% Similarity=0.212 Sum_probs=108.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC--------CCCCceEEECCEeCCCCC---------------hHHhhccceEE---c
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIV--------EPTAGLIAIDGIDISSIG---------------LHDLRSRLSII---P 324 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~--------~~~~G~i~~~g~~~~~~~---------------~~~~r~~i~~v---~ 324 (489)
++++|+|+||||||||++.|+|+. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999998 789999999999987663 34567788888 7
Q ss_pred CCCcc-CccchhhhcCCCCCCcH-HHH---HHHHH---------HcCCcHHHHhccccccchhhcCCCCCCchHHHHHHH
Q 011281 325 QDPTM-FEGSVHNNLDPLEEYAD-EEI---WEALD---------KCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCL 390 (489)
Q Consensus 325 Q~~~l-f~~ti~~Ni~~~~~~~~-~~~---~~~~~---------~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~l 390 (489)
|++.+ |+.++.||..++....- ..+ .+.-+ .+++.++...++ ++|+||+||...
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------------~ls~g~~Q~~~a 152 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------------QFTIAQSQVGYA 152 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------------HCHHHHHHHHTC
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------------hchHHHHHHHhC
Confidence 88764 56799999987632110 011 11111 112222222111 479999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhh
Q 011281 391 ARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV 441 (489)
Q Consensus 391 aRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 441 (489)
+++++.+|+++ ||| +.+.+.+++..++.|++++||+...+
T Consensus 153 d~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 153 DRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDL 192 (318)
T ss_dssp SEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCG
T ss_pred CEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCH
Confidence 99999999987 888 56777777766789999999975433
No 123
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.63 E-value=9.6e-18 Score=154.64 Aligned_cols=151 Identities=14% Similarity=0.027 Sum_probs=94.1
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCCCc
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYA 345 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~ 345 (489)
.+++|++++|+|||||||||++++|+|. |..|.|.++|.++.... ..++.++|++|++. ...|+.+|+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~---- 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADV---- 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHH----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHH----
Confidence 4789999999999999999999999998 78899999987653221 11334678888655 345777776421
Q ss_pred HHHHHHHHHHcCCcHHHHhccc--cccchh--hcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 011281 346 DEEIWEALDKCQLGNEVRKNEG--KLESRV--TENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHT 421 (489)
Q Consensus 346 ~~~~~~~~~~~~l~~~i~~l~~--gldt~v--ge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~ 421 (489)
.. ... ..+....++.... +++..- +.....+|+|++||+++||++.++|+++ +|++..+.+.+.
T Consensus 76 -~~--~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 76 -AG--RYA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp -HH--HHH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred -HH--HHh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 00 011 1111100110000 111110 2233468999999999999999999876 588777777776
Q ss_pred HHHhcCCceEEEEecC
Q 011281 422 LGQHFSDCTVITIAHR 437 (489)
Q Consensus 422 l~~~~~~~t~i~itH~ 437 (489)
+........+++.|++
T Consensus 144 ~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 144 FADLGAFEHHVLPVSG 159 (191)
T ss_dssp TTCCGGGGGGEEECTT
T ss_pred HhccCcccccEEECCC
Confidence 6543222233444543
No 124
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.63 E-value=2.6e-15 Score=141.06 Aligned_cols=148 Identities=18% Similarity=0.094 Sum_probs=94.9
Q ss_pred ceeeeeE-EeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhh
Q 011281 259 VLRGLTC-TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 337 (489)
Q Consensus 259 ~l~~i~l-~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 337 (489)
.|+.+.. .+++|++++|+||+|||||||++.+++ .+..+.++++..+ ..+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~------------------------ 59 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSP------------------------ 59 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCH------------------------
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCH------------------------
Confidence 4666654 689999999999999999999999999 3333334433321 1122
Q ss_pred cCCCCCCcHHHHHHHHHHcCCc--HHHHhccccccchhhcCCCCCCch--HHHHHHHHHHhccC-CCEEEEeCCCCCCCH
Q 011281 338 LDPLEEYADEEIWEALDKCQLG--NEVRKNEGKLESRVTENGENWSMG--QRQLVCLARVLLKK-SKVLVLDEATASVDT 412 (489)
Q Consensus 338 i~~~~~~~~~~~~~~~~~~~l~--~~i~~l~~gldt~vge~G~~LSgG--q~Qrl~laRall~~-~~illlDEpts~lD~ 412 (489)
+++.+.++..++. ++.+.+ .+ ..+|++ |+|+++.+|+++++ |+++++||||+.+|+
T Consensus 60 ---------~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 60 ---------ERLVQMAETRGLNPEEALSRF------IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp ---------HHHHHHHHTTTCCHHHHHHHE------EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred ---------HHHHHHHHhcCCChHHHhhcE------EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 2222222222221 111111 01 122444 46789999999986 999999999999997
Q ss_pred HHH--------HHHHHHHHHhc--CCceEEEEecCch-------------hhhh-cCEEEEEeCC
Q 011281 413 ATD--------NLIQHTLGQHF--SDCTVITIAHRIT-------------SVID-SDMVLLLSYG 453 (489)
Q Consensus 413 ~~~--------~~i~~~l~~~~--~~~t~i~itH~~~-------------~~~~-~d~i~~l~~G 453 (489)
..+ ..+.+.|++.. .+.|+|+++|... .+.. ||+|++|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 432 33444455543 2789999999876 3444 9999999765
No 125
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.62 E-value=2.1e-16 Score=155.02 Aligned_cols=151 Identities=13% Similarity=0.151 Sum_probs=97.8
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcC-CCCCC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD-PLEEY 344 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~-~~~~~ 344 (489)
.+++|++++|+||||||||||++.+++... .|.+. .|.+... +..+.|++.+... ..+..++. ++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhc
Confidence 378999999999999999999999998654 46663 3443211 2356676655432 12222211 11222
Q ss_pred cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCC--CCCHHHH---HHHH
Q 011281 345 ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA--SVDTATD---NLIQ 419 (489)
Q Consensus 345 ~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts--~lD~~~~---~~i~ 419 (489)
...+..++++.+.+.+ ..+.....||+||.|++ |+++++|+++|+||||+ ++|.... ..+.
T Consensus 95 ~~~~~~~~~~~l~l~~-----------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 95 SAEERQAVADGLLIQP-----------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp CHHHHHHHHHHEEECC-----------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred ChhhhhhccCceEEee-----------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 3344444455443322 23445667899998765 68889999999999999 9997543 6677
Q ss_pred HHHHHhc--CCceEEEEecCchhh
Q 011281 420 HTLGQHF--SDCTVITIAHRITSV 441 (489)
Q Consensus 420 ~~l~~~~--~~~t~i~itH~~~~~ 441 (489)
+.|..+. .+.|+|+++|.....
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHcCCEEEEEecCCCcc
Confidence 7776653 488999999987654
No 126
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.61 E-value=1.8e-19 Score=169.32 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=85.2
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCC--C--
Q 011281 267 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPL--E-- 342 (489)
Q Consensus 267 i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~--~-- 342 (489)
.++|++++|+||||||||||+++|+|+++|. | ..+++|+++.+.+..+..+|+... .
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4689999999999999999999999999875 4 246777777777776666665321 0
Q ss_pred --CCcHHHHHHHHHHcCCcHHHHhcccc--ccchhhcCCCCCCchHHHHHHHH-HHhccCCCEEEEeCCC
Q 011281 343 --EYADEEIWEALDKCQLGNEVRKNEGK--LESRVTENGENWSMGQRQLVCLA-RVLLKKSKVLVLDEAT 407 (489)
Q Consensus 343 --~~~~~~~~~~~~~~~l~~~i~~l~~g--ldt~vge~G~~LSgGq~Qrl~la-Rall~~~~illlDEpt 407 (489)
....+.+. +++..++.| +++++.+.+..+|+||+||+++| |+++.+++++++|||.
T Consensus 80 ~~~~~~~~~~---------~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 PETFDFEGFQ---------RLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp GGGBCHHHHH---------HHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CchhhHHHHH---------HHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 11222222 233334433 78889999999999999999998 9999999888899985
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.57 E-value=2.2e-15 Score=143.84 Aligned_cols=146 Identities=19% Similarity=0.193 Sum_probs=88.3
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhc--CCCC-----CCceEEECCEeCCC-CChHHhhccceEEcCCCccCccchhhh
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFR--IVEP-----TAGLIAIDGIDISS-IGLHDLRSRLSIIPQDPTMFEGSVHNN 337 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g--~~~~-----~~G~i~~~g~~~~~-~~~~~~r~~i~~v~Q~~~lf~~ti~~N 337 (489)
-+++|++++|+||||||||||++.+++ ..+| ..|.+++++.+.-. -....+.+.+++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 488999999999999999999999999 5665 67888888754211 0122234455555442 3455
Q ss_pred cCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHH--
Q 011281 338 LDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL--KKSKVLVLDEATASVDTA-- 413 (489)
Q Consensus 338 i~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall--~~~~illlDEpts~lD~~-- 413 (489)
+.+....+.++..+. +.-++.++ .+|+++++||||+.+|+.
T Consensus 93 ~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 93 VAYARAFNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp EEEEECCSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred eEEEecCCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 443222222222111 11122222 689999999999999975
Q ss_pred -----HH-----HHHHHHHHHhc--CCceEEEEecCchhh-------------------h-hcCEEEEEeCC
Q 011281 414 -----TD-----NLIQHTLGQHF--SDCTVITIAHRITSV-------------------I-DSDMVLLLSYG 453 (489)
Q Consensus 414 -----~~-----~~i~~~l~~~~--~~~t~i~itH~~~~~-------------------~-~~d~i~~l~~G 453 (489)
.+ ..+...+.+.. .+.|+|+++|..... . .||.+++|+.|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 32 23344444332 378999999965432 2 48999999876
No 128
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.51 E-value=3.2e-14 Score=145.34 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=66.9
Q ss_pred CCCCchHHHHH------HHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEEEE
Q 011281 378 ENWSMGQRQLV------CLARVLLKK-SKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVLLL 450 (489)
Q Consensus 378 ~~LSgGq~Qrl------~laRall~~-~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 450 (489)
..|||||+||+ ++||++..+ |+++||||||++||+.+...+.+.|.+..++.++|+|||+.+....||+++++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 47999999987 668999999 99999999999999999999999998865567999999999866669999999
Q ss_pred e
Q 011281 451 S 451 (489)
Q Consensus 451 ~ 451 (489)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 129
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.51 E-value=1e-17 Score=154.48 Aligned_cols=166 Identities=16% Similarity=-0.006 Sum_probs=104.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccC-ccchhhhcCCCCCCcHHH
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF-EGSVHNNLDPLEEYADEE 348 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~~Ni~~~~~~~~~~ 348 (489)
|++++|+|||||||||++++|++ |.+|.+.++|.++... ..+++++|....+ ..|+++|+.. .
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~-------~ 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITD-------L 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHH-------H
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHH-------H
Confidence 68999999999999999999998 6789999988654321 2456777765333 2366666532 1
Q ss_pred HHHHHHHcCCcHHHHhccccccchhh----cCCCCC--CchHHHHHHHHH------HhccCCCEEEEeCCCCCCCHHHHH
Q 011281 349 IWEALDKCQLGNEVRKNEGKLESRVT----ENGENW--SMGQRQLVCLAR------VLLKKSKVLVLDEATASVDTATDN 416 (489)
Q Consensus 349 ~~~~~~~~~l~~~i~~l~~gldt~vg----e~G~~L--SgGq~Qrl~laR------all~~~~illlDEpts~lD~~~~~ 416 (489)
...... .+.... ++...+ +.-..+ |+|++|++.++. +++++|+...+|+ ++|+...+
T Consensus 66 ~~~~~~-~~~~~i-------ld~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~ 134 (189)
T 2bdt_A 66 TVNFLL-AQNDVV-------LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLE 134 (189)
T ss_dssp HHHHHH-TTCEEE-------EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGH
T ss_pred HHHHHh-cCCcEE-------EeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHH
Confidence 111111 111000 111000 000123 788888887777 8888888777884 79988766
Q ss_pred HHHHHHHHhc-CCceEEEEecC-chhhhh-cCEEEEEeCCEEEEecChhHHh
Q 011281 417 LIQHTLGQHF-SDCTVITIAHR-ITSVID-SDMVLLLSYGLIEEFDSPTRLL 465 (489)
Q Consensus 417 ~i~~~l~~~~-~~~t~i~itH~-~~~~~~-~d~i~~l~~G~i~~~g~~~el~ 465 (489)
. ++.+.... .+.|+|..||. ++.+.. ||+|+ ++|+++..|+++-|-
T Consensus 135 ~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 135 L-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp H-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred H-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 6 67776654 35799999999 999887 99998 999999999987664
No 130
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=1e-14 Score=147.37 Aligned_cols=139 Identities=15% Similarity=0.167 Sum_probs=81.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhc-CCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCc-cchhhhcCCCCCCcHHH
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFR-IVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHNNLDPLEEYADEE 348 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~ 348 (489)
..+.|+||+|+||||++++++| ++.|..|.+.++|.+...... .+..+++++|.+++.- .+- .+ ......
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~ 108 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MG-NNDRIV 108 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC----------CCHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cC-CcchHH
Confidence 3499999999999999999999 899999999999987754322 3677999999886531 110 00 111223
Q ss_pred HHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC
Q 011281 349 IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSD 428 (489)
Q Consensus 349 ~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~ 428 (489)
+++.++.+.-. .+++..+ .||| +..+|+++|+|||++ ||+...+.+.+.+.+..++
T Consensus 109 ~~~~i~~~~~~-------~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLKEVAQM-------EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHHHHTTT-------TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHh-------ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 34443332110 0111111 4566 778999999999999 9999999999999876667
Q ss_pred ceEEEEecCchhh
Q 011281 429 CTVITIAHRITSV 441 (489)
Q Consensus 429 ~t~i~itH~~~~~ 441 (489)
.++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999997654
No 131
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.50 E-value=1.1e-15 Score=154.15 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=111.9
Q ss_pred EEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh----HHhhccce
Q 011281 246 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL----HDLRSRLS 321 (489)
Q Consensus 246 ~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~r~~i~ 321 (489)
+|+++.|.. ..++++++|++++|++++|+||||||||||++.|+|++.|++|+|.+.|.+...... ...|..++
T Consensus 33 ~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~ 110 (337)
T 2qm8_A 33 RRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA 110 (337)
T ss_dssp SSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGST
T ss_pred CCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhhe
Confidence 344445532 248999999999999999999999999999999999999999999999988754321 23567899
Q ss_pred EEcCCCccCcc----------c---hhhhc--------C------CCCCCcHHHHHHHHHH-------------cCCcHH
Q 011281 322 IIPQDPTMFEG----------S---VHNNL--------D------PLEEYADEEIWEALDK-------------CQLGNE 361 (489)
Q Consensus 322 ~v~Q~~~lf~~----------t---i~~Ni--------~------~~~~~~~~~~~~~~~~-------------~~l~~~ 361 (489)
+++|++.+|.. | ++|.+ . .|-..++..+.+.++. -.+...
T Consensus 111 ~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~ 190 (337)
T 2qm8_A 111 RLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKG 190 (337)
T ss_dssp TGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTT
T ss_pred eeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHH
Confidence 99999988752 1 11111 0 0000011111100000 001111
Q ss_pred HHhccc-----cccchhhcCCCCCCchHHHHHHHHHHhcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 011281 362 VRKNEG-----KLESRVTENGENWSMGQRQLVCLARVLLK------KSKVLVLDEATASVDTATDNLIQHTLGQH 425 (489)
Q Consensus 362 i~~l~~-----gldt~vge~G~~LSgGq~Qrl~laRall~------~~~illlDEpts~lD~~~~~~i~~~l~~~ 425 (489)
+...+. +.|- .....+|+|++|++..|++++. +|+++. ||++|......+.+.|.+.
T Consensus 191 i~~~~~ivvlNK~Dl---~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 191 IFELADMIAVNKADD---GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp HHHHCSEEEEECCST---TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HhccccEEEEEchhc---cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 111121 1110 0112368999999999999997 688876 9999999888888888764
No 132
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.49 E-value=9e-16 Score=159.93 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=101.9
Q ss_pred eeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC----hHH--hhccceEEcCCCccCc-c
Q 011281 260 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG----LHD--LRSRLSIIPQDPTMFE-G 332 (489)
Q Consensus 260 l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~----~~~--~r~~i~~v~Q~~~lf~-~ 332 (489)
-+++||++++|++++|+||||||||||+++|+|++.|++|+|.++|.+..... ... .|+.|+|++|++.++. .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 35789999999999999999999999999999999999999999887765421 122 3678999999987664 4
Q ss_pred chhhhcCCCC--CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC-C-CEEEEeCCCC
Q 011281 333 SVHNNLDPLE--EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK-S-KVLVLDEATA 408 (489)
Q Consensus 333 ti~~Ni~~~~--~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~-~-~illlDEpts 408 (489)
|+++|+.++. ..+ .-.++.+|..+.- .++-.--+|++.++|++... | .+++..+||.
T Consensus 363 tV~e~l~~a~~~~~D----vVLIDTaGrl~~~---------------~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt 423 (503)
T 2yhs_A 363 VIFDAIQAAKARNID----VLIADTAGRLQNK---------------SHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST 423 (503)
T ss_dssp HHHHHHHHHHHTTCS----EEEECCCCSCCCH---------------HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG
T ss_pred HHHHHHHHHHhcCCC----EEEEeCCCccchh---------------hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc
Confidence 8899885421 000 0001111111100 01111235788999987544 5 3555555888
Q ss_pred CCCHHHHHHHHHHHHHhcCCceEEEEecC
Q 011281 409 SVDTATDNLIQHTLGQHFSDCTVITIAHR 437 (489)
Q Consensus 409 ~lD~~~~~~i~~~l~~~~~~~t~i~itH~ 437 (489)
+.|.... .+.+.+ .-+.|.+++||-
T Consensus 424 Gq~al~~---ak~f~~-~~~itgvIlTKL 448 (503)
T 2yhs_A 424 GQNAVSQ---AKLFHE-AVGLTGITLTKL 448 (503)
T ss_dssp THHHHHH---HHHHHH-HTCCSEEEEECG
T ss_pred cHHHHHH---HHHHHh-hcCCCEEEEEcC
Confidence 8655422 222222 236799999993
No 133
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.49 E-value=4.7e-16 Score=149.69 Aligned_cols=147 Identities=14% Similarity=0.057 Sum_probs=95.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---cCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCcc-chhhhcCC----
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLF---RIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLDP---- 340 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~---g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~---- 340 (489)
++++++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...+..++|++.+++. |+.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999998876532 1344556677787776654 77777632
Q ss_pred ---------CCCCcHHHHHHHHHHcCCc--HHHHhcccc-ccchhhcCCCCCCchHHHHHHHHHHh-ccCCCEEEEe---
Q 011281 341 ---------LEEYADEEIWEALDKCQLG--NEVRKNEGK-LESRVTENGENWSMGQRQLVCLARVL-LKKSKVLVLD--- 404 (489)
Q Consensus 341 ---------~~~~~~~~~~~~~~~~~l~--~~i~~l~~g-ldt~vge~G~~LSgGq~Qrl~laRal-l~~~~illlD--- 404 (489)
+.....++........... -+++.-|+. ++-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 1111222222221111111 000000000 11111223346888 66 888 9999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHHHhc
Q 011281 405 -EATASVDTATDNLIQHTLGQHF 426 (489)
Q Consensus 405 -Epts~lD~~~~~~i~~~l~~~~ 426 (489)
|||+++|+.+++.+.+.+..+.
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999988888887653
No 134
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.47 E-value=2e-15 Score=135.46 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=70.1
Q ss_pred EEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcC
Q 011281 246 HGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQ 325 (489)
Q Consensus 246 ~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q 325 (489)
+|++++|++ ..+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++... ...+ .+++|
T Consensus 11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 345566643 35899999999999999999999999999999999999 9999999999877421 1112 28999
Q ss_pred CCccCccchhhhcC
Q 011281 326 DPTMFEGSVHNNLD 339 (489)
Q Consensus 326 ~~~lf~~ti~~Ni~ 339 (489)
++.+|.-|+.||+.
T Consensus 83 ~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 83 HFDLYRLADPEELE 96 (158)
T ss_dssp EEECTTCSCTTHHH
T ss_pred ccccccCCcHHHHH
Confidence 99888668988873
No 135
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.46 E-value=1.4e-14 Score=146.11 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=79.5
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCceEEEC-CEeCCCCChHHhhccceEEcCCCccCcc-chh
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-PTAGLIAID-GIDISSIGLHDLRSRLSIIPQDPTMFEG-SVH 335 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-~~~G~i~~~-g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 335 (489)
-++++++. .+|++++|+||||||||||+++|+|+.+ |..|+|.++ |.+.. ...+..+++++|++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46677764 4899999999999999999999999999 999999987 65542 1245679999999998875 899
Q ss_pred hhcCCCCCCcHHH----HHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc
Q 011281 336 NNLDPLEEYADEE----IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL 395 (489)
Q Consensus 336 ~Ni~~~~~~~~~~----~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall 395 (489)
++... ..+.++ +.++++.+++.++.+ ..-.+|| ||+||++||++++
T Consensus 280 e~~l~--~l~~~e~~~~~~e~l~~~gl~~f~~-----------~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGLW--HLEPEQITQGFVEFHDYLGHCKYRD-----------CKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCCC--CCCHHHHHHTSGGGGGGTTCSSSTT-----------CCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhhc--CCCHHHHHHHHHHHHHHcCCchhcC-----------CCcccCC-HHHHHHHHHhcCC
Confidence 87432 233433 233444444444433 2334579 9999999999863
No 136
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.46 E-value=1.3e-15 Score=152.61 Aligned_cols=166 Identities=14% Similarity=0.077 Sum_probs=107.3
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChH----Hhhcc--ceEEcCCCccCcc-chhhhc
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLH----DLRSR--LSIIPQDPTMFEG-SVHNNL 338 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~----~~r~~--i~~v~Q~~~lf~~-ti~~Ni 338 (489)
..++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+...... .+++. +.+++|+..+++. |+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3468999999999999999999999999999999999999998766532 23444 5599999888764 888988
Q ss_pred CCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 011281 339 DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLI 418 (489)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i 418 (489)
.++ ... +.+ .+ -+||. |-.. .-..=.++.-.++|++..++++++||.+|. .|... .
T Consensus 205 ~~~-----------~~~-~~d-~v-----liDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~---~ 260 (328)
T 3e70_C 205 QHA-----------KAR-GID-VV-----LIDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE---Q 260 (328)
T ss_dssp HHH-----------HHH-TCS-EE-----EEEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH---H
T ss_pred HHH-----------Hhc-cch-hh-----HHhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH---H
Confidence 432 000 000 00 01221 1000 001122344458999999999999996665 33221 1
Q ss_pred HHHHHHhcCCceEEEEecCchhh---------h-hcCEEEEEeCCEEE
Q 011281 419 QHTLGQHFSDCTVITIAHRITSV---------I-DSDMVLLLSYGLIE 456 (489)
Q Consensus 419 ~~~l~~~~~~~t~i~itH~~~~~---------~-~~d~i~~l~~G~i~ 456 (489)
.+.+.+ ..+.|+|++||--++. . ..-.|..+..|+-+
T Consensus 261 ~~~~~~-~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 261 ARQFNE-AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHH-HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHH-hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 122222 2378999999955432 1 14578888888754
No 137
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.45 E-value=6.9e-14 Score=143.62 Aligned_cols=145 Identities=18% Similarity=0.188 Sum_probs=92.6
Q ss_pred EeeCCCEEEEECCCCCcHHHHHH--HHhcCCCCCCc-----eEEECCEeCCCCChH---HhhccceEEcCCCccCccchh
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQ--TLFRIVEPTAG-----LIAIDGIDISSIGLH---DLRSRLSIIPQDPTMFEGSVH 335 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~--~l~g~~~~~~G-----~i~~~g~~~~~~~~~---~~r~~i~~v~Q~~~lf~~ti~ 335 (489)
-|++|++++|+||||||||||++ ++.+..+|+.| .+++++.+. ++.. .+++.+++.+| ++.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~--~~~~rl~~~a~~~gl~~~-------~vl 244 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT--FRPVRLVSIAQRFGLDPD-------DAL 244 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc--cCHHHHHHHHHHcCCChH-------hHh
Confidence 58899999999999999999999 44577776444 788888652 2222 23445555444 556
Q ss_pred hhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHH
Q 011281 336 NNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL--KKSKVLVLDEATASVDTA 413 (489)
Q Consensus 336 ~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall--~~~~illlDEpts~lD~~ 413 (489)
+|+.+....+.++. .+.+.-++.++ .+|+++++||||+.+|++
T Consensus 245 eni~~~~~~~~~~~-----------------------------------~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 245 NNVAYARAYNADHQ-----------------------------------LRLLDAAAQMMSESRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp HTEEEEECCSHHHH-----------------------------------HHHHHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred hcEEEeccCChHHH-----------------------------------HHHHHHHHHHHHhcCCceEEecchhhhCchh
Confidence 66655433222221 12222222222 479999999999999975
Q ss_pred HH------------HHHHHHHHHhc--CCceEEEEecCc-------------------hhhhh-cCEEEEEeCCE
Q 011281 414 TD------------NLIQHTLGQHF--SDCTVITIAHRI-------------------TSVID-SDMVLLLSYGL 454 (489)
Q Consensus 414 ~~------------~~i~~~l~~~~--~~~t~i~itH~~-------------------~~~~~-~d~i~~l~~G~ 454 (489)
.. ..+.+.|+++. .+.|+|+|+|.. ..+.+ +|.+++|+.|+
T Consensus 290 ~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 290 FSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 33 44556665543 378999999982 22344 89999998764
No 138
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.45 E-value=1.4e-16 Score=164.62 Aligned_cols=127 Identities=18% Similarity=0.081 Sum_probs=90.9
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC----ChHHhhccceEEc---------C
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI----GLHDLRSRLSIIP---------Q 325 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~---------Q 325 (489)
+|+++ + .++|+.++|+|||||||||++++|+|+++|.+|+|.+++.++... +...++..+++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 378999999999999999999999999999999999999877421 1122445566655 9
Q ss_pred CCccC--c-----cchhhhcCCC----------CCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH
Q 011281 326 DPTMF--E-----GSVHNNLDPL----------EEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV 388 (489)
Q Consensus 326 ~~~lf--~-----~ti~~Ni~~~----------~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl 388 (489)
+|.++ . .|+.+|+... +..+..+..+.+...++.++. + ..+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~-----------~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--I-----------SSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--H-----------HHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--H-----------HHHHHHHHHHH-
Confidence 98763 2 3777877431 111223344456666766542 1 23579999999
Q ss_pred HHHHHhccCCCEEE
Q 011281 389 CLARVLLKKSKVLV 402 (489)
Q Consensus 389 ~laRall~~~~ill 402 (489)
|||+++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999876
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.43 E-value=1.9e-16 Score=167.70 Aligned_cols=172 Identities=16% Similarity=0.122 Sum_probs=111.3
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCcc--chh
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG--SVH 335 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~--ti~ 335 (489)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--.++ -.+.++++.|... ..+ |.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeeccc-ccCCcCHH
Confidence 3678899999999999999999999999999999999999999999886522221 1345677777654 222 455
Q ss_pred hhcC----CC------CCCcHHHHHHHHHHc--CC-----------cHHHHhc---cccccchhh-------cCCCCCCc
Q 011281 336 NNLD----PL------EEYADEEIWEALDKC--QL-----------GNEVRKN---EGKLESRVT-------ENGENWSM 382 (489)
Q Consensus 336 ~Ni~----~~------~~~~~~~~~~~~~~~--~l-----------~~~i~~l---~~gldt~vg-------e~G~~LSg 382 (489)
+++. .. .+....+...++..+ |. .+.+.++ +.++...+. .....+|+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 4432 11 123333344444332 21 1122222 122222211 12335799
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEE--EecCchhhhh-cC
Q 011281 383 GQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF-SDCTVIT--IAHRITSVID-SD 445 (489)
Q Consensus 383 Gq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~-~~~t~i~--itH~~~~~~~-~d 445 (489)
||+||.++|. + | |++||+...+.+.+.+..+. .++|+++ +||+++.+.. |+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 9999987752 1 7 99999988776666666554 3678875 8999998875 54
No 140
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.39 E-value=2.7e-13 Score=120.34 Aligned_cols=91 Identities=21% Similarity=0.218 Sum_probs=67.9
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc--eEEECCEeCCCCChHHhhccceEEcCCCccCccchhh
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG--LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 336 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G--~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 336 (489)
+++++ +|+.++|+||+|||||||++++++.+.+ +| .+.+++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46666 8999999999999999999999999876 46 455544222110
Q ss_pred hcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 011281 337 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDN 416 (489)
Q Consensus 337 Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~ 416 (489)
+++.+|++|++|||++ +|...++
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 2457899999999998 6655577
Q ss_pred HHHHHHHHhc-CCce-EEEEecC
Q 011281 417 LIQHTLGQHF-SDCT-VITIAHR 437 (489)
Q Consensus 417 ~i~~~l~~~~-~~~t-~i~itH~ 437 (489)
.+.+.+.... ++++ +|++||+
T Consensus 102 ~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHcCCcEEEEECCC
Confidence 8888887644 4677 7777775
No 141
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.38 E-value=7.5e-14 Score=138.54 Aligned_cols=113 Identities=14% Similarity=0.094 Sum_probs=80.7
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE---CCEeCCCCChHHhh-ccceEEcCCCccC------ccchh
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI---DGIDISSIGLHDLR-SRLSIIPQDPTMF------EGSVH 335 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~r-~~i~~v~Q~~~lf------~~ti~ 335 (489)
++.+|++++++||||||||||+++|+ +.+|..|+|.+ +|++++.... ..+ +.++||+|+|.+. +-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45579999999999999999999999 99999999999 9988865432 223 3699999999653 3478
Q ss_pred hhc--CCC---------C-----CCcHHHHHHHHHHcCCcH-HHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 336 NNL--DPL---------E-----EYADEEIWEALDKCQLGN-EVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 336 ~Ni--~~~---------~-----~~~~~~~~~~~~~~~l~~-~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
+|+ .+. . .....++.++++..++.+ ..++.|. .|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~-----------~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK-----------IIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH-----------HTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH-----------HHHHHHHHHHHHhc
Confidence 887 332 1 112357899999999986 4444443 26998889999987
No 142
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.38 E-value=2.3e-13 Score=124.23 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=74.2
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCC
Q 011281 264 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEE 343 (489)
Q Consensus 264 ~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~ 343 (489)
+|++++|+.++|+||+|||||||++++++.+.|..|... .++ +..+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~~---------~~~~~------ 78 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YFF---------DTKDL------ 78 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CEE---------EHHHH------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EEE---------EHHHH------
Confidence 467788999999999999999999999998876655211 010 11111
Q ss_pred CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHH
Q 011281 344 YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA-SVDTATDNLIQHTL 422 (489)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts-~lD~~~~~~i~~~l 422 (489)
.+++......... + -+...+.+|++|+||||++ ++|+...+.+.+.+
T Consensus 79 --~~~~~~~~~~~~~---------------------------~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 79 --IFRLKHLMDEGKD---------------------------T---KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp --HHHHHHHHHHTCC---------------------------S---HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred --HHHHHHHhcCchH---------------------------H---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 0111111110000 0 1112245999999999995 89999988888888
Q ss_pred HHhc-CCceEEEEecCch
Q 011281 423 GQHF-SDCTVITIAHRIT 439 (489)
Q Consensus 423 ~~~~-~~~t~i~itH~~~ 439 (489)
.... .++++|++||...
T Consensus 127 ~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 127 TYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHTTCEEEEECCCCS
T ss_pred HHHHHcCCCEEEEcCCCh
Confidence 7654 6889999999864
No 143
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.37 E-value=2.6e-15 Score=147.06 Aligned_cols=143 Identities=14% Similarity=0.115 Sum_probs=103.8
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCC-ccCcc-chh
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP-TMFEG-SVH 335 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-~lf~~-ti~ 335 (489)
.+++++++++++| ++|+||+|||||||+++|+|.+.+ |.|.++|.++........++.+++++|++ ..++. ++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4788999999999 999999999999999999999887 79999998886655566677899999986 34443 678
Q ss_pred hhcCCCCCC-cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCC------
Q 011281 336 NNLDPLEEY-ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA------ 408 (489)
Q Consensus 336 ~Ni~~~~~~-~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts------ 408 (489)
||+...... ...+. .........++ ..|||||+||..+++|+..+|+++ |||+.
T Consensus 110 Deid~~~~~r~~~~~------~~~~~~~~~~l-----------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRET------GASVRVVNQLL-----------TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC---------------CTTHHHHHH-----------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcc------hHHHHHHHHHH-----------HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 888653211 11110 01122222222 236999999999999999999975 99975
Q ss_pred ------CCCHHHHHHHHHHHH
Q 011281 409 ------SVDTATDNLIQHTLG 423 (489)
Q Consensus 409 ------~lD~~~~~~i~~~l~ 423 (489)
--|.+.+..|++.+.
T Consensus 171 ~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHHT
T ss_pred eEEEeCCcCHHHHHHHHHHHH
Confidence 236667767766654
No 144
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.32 E-value=5.9e-13 Score=131.99 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=71.3
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE---CCEeCCCCChHHhhccceEEcCCCc-------------
Q 011281 265 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI---DGIDISSIGLHDLRSRLSIIPQDPT------------- 328 (489)
Q Consensus 265 l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~------------- 328 (489)
|++.+|++++|+||||||||||+++|+|+.+|+.|+|.+ +|.++.........+.+++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 9998876542111236999999985
Q ss_pred ---cCcc-chhhhcCCCC----CCcHHHHHHHHHHcCCc-HHHHhccccc
Q 011281 329 ---MFEG-SVHNNLDPLE----EYADEEIWEALDKCQLG-NEVRKNEGKL 369 (489)
Q Consensus 329 ---lf~~-ti~~Ni~~~~----~~~~~~~~~~~~~~~l~-~~i~~l~~gl 369 (489)
+|+. |+ +|+.+.. .....++.++++.++|. +..++.|.-+
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~l 292 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMF 292 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4554 78 9998742 22346789999999995 6666666433
No 145
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.30 E-value=3e-15 Score=142.60 Aligned_cols=183 Identities=8% Similarity=0.033 Sum_probs=72.8
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCceEEECCEeCCCCChH-HhhccceEEcCCCccCcc-chh
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF-RIVEPTAGLIAIDGIDISSIGLH-DLRSRLSIIPQDPTMFEG-SVH 335 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~-g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i~~v~Q~~~lf~~-ti~ 335 (489)
..+++||++++|++++|+||||||||||+++|+ |+++|. .++.++..-.+. .-+..+.|.++++..|.. +..
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhhhc
Confidence 578999999999999999999999999999999 998441 222222111110 011234466666555543 333
Q ss_pred hhcC----CCC---CCcHHHHHHHHHHcCCcHHHHhc-cccccchhhcCCCCCCchHHHHH-HHH-HHhccCCCEEEEeC
Q 011281 336 NNLD----PLE---EYADEEIWEALDKCQLGNEVRKN-EGKLESRVTENGENWSMGQRQLV-CLA-RVLLKKSKVLVLDE 405 (489)
Q Consensus 336 ~Ni~----~~~---~~~~~~~~~~~~~~~l~~~i~~l-~~gldt~vge~G~~LSgGq~Qrl-~la-Rall~~~~illlDE 405 (489)
+|+. +.. ....+++.++++.... .+-.. +.|. ..-++++ .-+ ..++..|+..++||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--vild~~~~g~------------~~~~~~~~~~~~~v~v~~~~~~~l~~ 156 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYGVPRKNLEDNVDKGVS--TLLVIDWQGA------------FKFMEMMREHVVSIFIMPPSMEELRR 156 (231)
T ss_dssp TCEEEEEEETTEEEEEECTTHHHHHHHTCE--EEEECCHHHH------------HHHHHHSGGGEEEEEEECSCHHHHHH
T ss_pred CceehhhhhccccCCCCHHHHHHHHHcCCe--EEEEcCHHHH------------HHHHHhcCCCeEEEEEECCcHHHHHH
Confidence 3332 110 1112334444443210 00000 0111 1113333 222 23456778888899
Q ss_pred CCCCCCHHHHHHHHHHHHHhc------CCceEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 011281 406 ATASVDTATDNLIQHTLGQHF------SDCTVITIAHRITSVID-SDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 406 pts~lD~~~~~~i~~~l~~~~------~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 460 (489)
++++.|..+++.+.+.+.... +....|++.|+++.+.. .++++...+++....++
T Consensus 157 Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~~~~~ 218 (231)
T 3lnc_A 157 RLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTCRQVG 218 (231)
T ss_dssp C--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGGGEES
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccccCcc
Confidence 999999888877766665332 12345555555544332 44444333444333333
No 146
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.29 E-value=9.9e-13 Score=135.61 Aligned_cols=152 Identities=14% Similarity=0.209 Sum_probs=92.6
Q ss_pred eeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcC
Q 011281 260 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD 339 (489)
Q Consensus 260 l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~ 339 (489)
-++++|+++.|+.++|+|+||||||||+++|++..+ .+.+.+...+ ...+++|+++.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 578999999999999999999999999999999843 3444444333 335777777641 1113333332
Q ss_pred CCC------CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 011281 340 PLE------EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTA 413 (489)
Q Consensus 340 ~~~------~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~ 413 (489)
+.+ .... ...+..+.+. ..+..+.-. +.++ .+||+||+|++++||+|..+|.++++ +.+|..
T Consensus 215 li~~a~~~~~L~~-~fl~~~era~--~lL~vvDls-~~~~----~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGL-EFLRHIARTR--VLLYVLDAA-DEPL----KTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCH-HHHHHHTSSS--EEEEEEETT-SCHH----HHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhH-HHHHHHHHHH--hhhEEeCCc-cCCH----HHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 211 1111 1222222221 111111000 1222 34899999999999999999999999 999986
Q ss_pred HHHHHHHHHHH-hc-CCceEEEEec
Q 011281 414 TDNLIQHTLGQ-HF-SDCTVITIAH 436 (489)
Q Consensus 414 ~~~~i~~~l~~-~~-~~~t~i~itH 436 (489)
... ..+.+.+ .. .+.+++.||.
T Consensus 283 ~~~-~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEE-AVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHH-HHHHHHHHHHTTTSCEEECCT
T ss_pred hHH-HHHHHHHHHHhcCCeEEEEEC
Confidence 553 3333333 22 3567776653
No 147
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.29 E-value=1.9e-14 Score=143.27 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=94.5
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEe-------------------eCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCc
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTF-------------------LGGMKTGIVGRTGSGKSTLIQTLFRIVE--PTAG 299 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i-------------------~~g~~~~ivG~sGsGKSTl~~~l~g~~~--~~~G 299 (489)
..|+++||++.|. ++++++++.+ ++|++++|+||||||||||+++|+|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 3588999999993 4899999988 8999999999999999999999999998 9999
Q ss_pred eEEE---CCEeCCCCChHHhhccceEEcCCCccCc-cchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhc
Q 011281 300 LIAI---DGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTE 375 (489)
Q Consensus 300 ~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge 375 (489)
+|.+ ||.... ...++.++++ |+..++. -|+.+|+.+. .....-.+.+ ..| -++.
T Consensus 112 ~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~-----------~~l~~~~~~i-~~P-~~~~---- 169 (308)
T 1sq5_A 112 RVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFV-----------SDLKSGVPNV-TAP-VYSH---- 169 (308)
T ss_dssp CEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHH-----------HHHTTTCSCE-EEC-CEET----
T ss_pred eEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHH-----------HHHhCCCCce-ecc-cccc----
Confidence 9999 887642 2346678888 7665543 3666665321 0111000000 111 1211
Q ss_pred CCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 011281 376 NGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 412 (489)
Q Consensus 376 ~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~ 412 (489)
+.+ +|+..+.+.+.+++++|+|.|....+.
T Consensus 170 -----~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 170 -----LIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -----TTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -----ccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 111 333333355678999999999987763
No 148
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.23 E-value=6.7e-12 Score=116.46 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=57.0
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCcc-chhhhcC
Q 011281 264 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEG-SVHNNLD 339 (489)
Q Consensus 264 ~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~ 339 (489)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++........+..++|++|++..|.. +..+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999974 588888887766555567789999999988865 6666653
No 149
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.18 E-value=1e-11 Score=123.16 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=72.5
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCC
Q 011281 263 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLE 342 (489)
Q Consensus 263 i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~ 342 (489)
++++.++|++++++||+||||||++..|++.+.+..|+|.+.+.|.... + .
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------~------------a-------- 147 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------A------------A-------- 147 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------H------------H--------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------H------------H--------
Confidence 3445678999999999999999999999999999999999877654210 0 0
Q ss_pred CCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH---HHHHHhccCCCEEEEeCCCC
Q 011281 343 EYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV---CLARVLLKKSKVLVLDEATA 408 (489)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl---~laRall~~~~illlDEpts 408 (489)
.+++...++..++. . + ...|||+.|++ ++++|+.++|+++|+|||..
T Consensus 148 ---~eqL~~~~~~~gl~-----------~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 ---IEQLKIWGERVGAT-----------V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ---HHHHHHHHHHHTCE-----------E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ---HHHHHHHHHHcCCc-----------E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 12222233333321 1 1 13489999999 99999999999999999974
No 150
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.16 E-value=4.8e-13 Score=126.40 Aligned_cols=128 Identities=19% Similarity=0.157 Sum_probs=99.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC---CCCCceEEE--------CCEeCCC-CChHHhhccceEEcCCC------ccC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIV---EPTAGLIAI--------DGIDISS-IGLHDLRSRLSIIPQDP------TMF 330 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~---~~~~G~i~~--------~g~~~~~-~~~~~~r~~i~~v~Q~~------~lf 330 (489)
.+.+++|+||+||||||++++|++.+ .++.|++.. +|.++.+ ....++++.+++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999876 678899887 6776652 34567888999999976 334
Q ss_pred ccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhh-cCCCCCCchHHHHHHHHHHhccCCCEEEEeCCC
Q 011281 331 EGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVT-ENGENWSMGQRQLVCLARVLLKKSKVLVLDEAT 407 (489)
Q Consensus 331 ~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vg-e~G~~LSgGq~Qrl~laRall~~~~illlDEpt 407 (489)
..++.+++ .++++.+++..+...+.+.....+..+.+. ++|.-++|+ .++++++++++++|+.+++
T Consensus 84 ~~~v~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 84 GEDVSGEI------RTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp TEECHHHH------TSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred CeeCchhh------CCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 44555654 357788899999999998887767666653 456677887 5667788999999988865
No 151
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.15 E-value=5.4e-12 Score=124.88 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=58.2
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE---CCEeCCCCChHHhhccceEEcCCCccCc-----cchhh
Q 011281 265 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI---DGIDISSIGLHDLRSRLSIIPQDPTMFE-----GSVHN 336 (489)
Q Consensus 265 l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-----~ti~~ 336 (489)
+++.+|++++|+||||||||||+|+|+|+.+|..|+|.+ +|++++... ..++..+++++|+|.++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 456789999999999999999999999999999999999 888776532 222223899999997654 367 7
Q ss_pred hcC--CC-----------C-----CCcHHHHHHHHHHcCCcHHH
Q 011281 337 NLD--PL-----------E-----EYADEEIWEALDKCQLGNEV 362 (489)
Q Consensus 337 Ni~--~~-----------~-----~~~~~~~~~~~~~~~l~~~i 362 (489)
|+. +. . ......+.++++..++.+..
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r 289 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYR 289 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHH
Confidence 772 21 0 11235688899999987643
No 152
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.15 E-value=9.5e-14 Score=141.95 Aligned_cols=169 Identities=13% Similarity=0.072 Sum_probs=110.7
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCceEEECCEeCCCCCh-HHhhccc---eEEcCCCcc
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFR------------IVEPTAGLIAIDGIDISSIGL-HDLRSRL---SIIPQDPTM 329 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g------------~~~~~~G~i~~~g~~~~~~~~-~~~r~~i---~~v~Q~~~l 329 (489)
++++|.+++|+|++|||||||++.|+| ..+|+.|.+.++|..+..+.. -.-++.+ ..+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 467899999999999999999999999 667999999998743321100 0001122 366677776
Q ss_pred Ccc-chhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCC--CEEEEeCC
Q 011281 330 FEG-SVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKS--KVLVLDEA 406 (489)
Q Consensus 330 f~~-ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~--~illlDEp 406 (489)
..+ |..+++. .++...++.+.. +...-+..+ ......+||+. +| ++.++|||
T Consensus 96 ~~~~s~~e~L~-------~~fl~~ir~~d~---il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLG-------NAFLSHVRAVDA---IYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSC-------HHHHHHHTTCSE---EEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHH-------HHHHHHHHHHHH---HHHHHhccc---cceeeeecccc------------Ccchhhhhchhh
Confidence 654 4444441 122222232211 111111111 12223356552 89 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHh-cC-CceEEEEecCchhhhh-cCEEE-EEeCC-EEEEecCh
Q 011281 407 TASVDTATDNLIQHTLGQH-FS-DCTVITIAHRITSVID-SDMVL-LLSYG-LIEEFDSP 461 (489)
Q Consensus 407 ts~lD~~~~~~i~~~l~~~-~~-~~t~i~itH~~~~~~~-~d~i~-~l~~G-~i~~~g~~ 461 (489)
++.+|++..++.++.+... .. +.|+ ++|.+..+.. ||++. +|++| +++..|+.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999988888888765 43 4564 3999998876 99999 99999 88866653
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.15 E-value=4.5e-11 Score=118.06 Aligned_cols=142 Identities=14% Similarity=0.026 Sum_probs=96.3
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
+.++++++.|++. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|...-. ...
T Consensus 77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~---~~~---- 143 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA---ARE---- 143 (295)
T ss_dssp HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH---HHH----
T ss_pred HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh---HHH----
Confidence 3445566666432 1 577887 89999999999999999999999999999999999887654211 000
Q ss_pred EcCCCccCccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEE
Q 011281 323 IPQDPTMFEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLV 402 (489)
Q Consensus 323 v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~ill 402 (489)
++....+..++.- +|. +......+-+|.+++++...+++++|
T Consensus 144 -------------------------ql~~~~~~~~l~~----~~~---------~~~~~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 144 -------------------------QLRLLGEKVGVPV----LEV---------MDGESPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp -------------------------HHHHHHHHHTCCE----EEC---------CTTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred -------------------------HHHHhcccCCeEE----EEc---------CCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 0011112222211 111 11123445678999999889999999
Q ss_pred EeCC-CCCCCHHHHHHHHHHHHHhcCCceEEEEe
Q 011281 403 LDEA-TASVDTATDNLIQHTLGQHFSDCTVITIA 435 (489)
Q Consensus 403 lDEp-ts~lD~~~~~~i~~~l~~~~~~~t~i~it 435 (489)
+||| ++++|......+.+.........+++++.
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9999 99999988777777766555566655553
No 154
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.14 E-value=2.9e-11 Score=119.46 Aligned_cols=138 Identities=12% Similarity=0.049 Sum_probs=89.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCCCcHH
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADE 347 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~ 347 (489)
++|++++++||+||||||++..|++.+.+.+| +++.++.+|++ ..+..++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eq---------- 152 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQ---------- 152 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHH----------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHH----------
Confidence 46899999999999999999999999988777 14556666652 2222222
Q ss_pred HHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-
Q 011281 348 EIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHF- 426 (489)
Q Consensus 348 ~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~- 426 (489)
+....+..++. .... ..+...+.+++++ ++|+++|+| |+++|+.....+.+...-..
T Consensus 153 -L~~~~~~~gl~-----------~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 153 -LKTYAELLQAP-----------LEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp -HHHHHTTTTCC-----------CCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred -HHHHHHhcCCC-----------eEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 22222222221 0000 1234456777764 899999999 99999876655544333221
Q ss_pred --CCceEEEE--ecCchhhhh-cCEEEEEeCCEEEE
Q 011281 427 --SDCTVITI--AHRITSVID-SDMVLLLSYGLIEE 457 (489)
Q Consensus 427 --~~~t~i~i--tH~~~~~~~-~d~i~~l~~G~i~~ 457 (489)
...+++++ +|..+.+.. +|++..+..|.++.
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23345555 898877776 78776677777775
No 155
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.14 E-value=1.7e-11 Score=128.13 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=50.8
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCC
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIG 312 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~ 312 (489)
.+|+++||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 379999999999 999999999999999999999999999999999999887554
No 156
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.07 E-value=2e-11 Score=117.79 Aligned_cols=102 Identities=21% Similarity=0.165 Sum_probs=78.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCceEE--------ECCEeCC-CCChHHhhccceEEcCC------Ccc
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLF---RIVEPTAGLIA--------IDGIDIS-SIGLHDLRSRLSIIPQD------PTM 329 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~---g~~~~~~G~i~--------~~g~~~~-~~~~~~~r~~i~~v~Q~------~~l 329 (489)
++|++++|+|||||||||++++|+ |++.|+.|.+. .+|.++. ......+++.+++++|+ .++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 689999999999999999999999 99999999999 9999884 45677899999999965 345
Q ss_pred CccchhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhc
Q 011281 330 FEGSVHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTE 375 (489)
Q Consensus 330 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge 375 (489)
+..++.+|+. .+++..+...+...+.+......+...++.
T Consensus 105 ~~~~v~~~i~------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~ 144 (252)
T 4e22_A 105 EGEDVSNEIR------TETVGNTASQAAAFPRVREALLRRQRAFRE 144 (252)
T ss_dssp TTEECTTGGG------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCC
T ss_pred CCeehhHHHH------HHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 5567777764 455666667766666666554444444433
No 157
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.05 E-value=8.2e-12 Score=114.95 Aligned_cols=139 Identities=18% Similarity=0.139 Sum_probs=76.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-----------CCceEEECCEeCCC--CChHHhhccceEEcCCCccCcc--chhh
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIVEP-----------TAGLIAIDGIDISS--IGLHDLRSRLSIIPQDPTMFEG--SVHN 336 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~~~-----------~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~~lf~~--ti~~ 336 (489)
+++|+|++|||||||++.++|...| ..|+|.++|.++.- ++....++..++++|...-.+. ++.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976531 1111122223333331110000 1222
Q ss_pred hcCCCCCCcHHHHH---HHHHH-cCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 011281 337 NLDPLEEYADEEIW---EALDK-CQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDT 412 (489)
Q Consensus 337 Ni~~~~~~~~~~~~---~~~~~-~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~ 412 (489)
+... .+.+.+. +.+.. .....-+...-+..| |..-..+....||+++++|+++++| ||++|.
T Consensus 111 ~~~~---~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~D---------l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKH---LTYENVERWLKELRDHADSNIVIMLVGNKSD---------LRHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCH---HHHHTHHHHHHHHHHHSCTTCEEEEEEECGG---------GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCH---HHHHHHHHHHHHHHHhcCCCCcEEEEEECcc---------cccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 2110 0011111 11111 110000000001111 1111123468899999999999999 999999
Q ss_pred HHHHHHHHHHHH
Q 011281 413 ATDNLIQHTLGQ 424 (489)
Q Consensus 413 ~~~~~i~~~l~~ 424 (489)
...+.+++.+.+
T Consensus 177 ~~v~~l~~~l~~ 188 (191)
T 1oix_A 177 TNVEAAFQTILT 188 (191)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 998888888764
No 158
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.04 E-value=1e-11 Score=130.79 Aligned_cols=161 Identities=15% Similarity=0.141 Sum_probs=96.4
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcC
Q 011281 262 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR--IVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD 339 (489)
Q Consensus 262 ~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~ 339 (489)
.+.+++.++.++.|+|+|||||||++++|.. ++.++.|++.+.+.|.+......+. .-|+++. ++.+|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-------~lPhl~~-~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-------GIPHLLT-EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-------TCTTBSS-SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-------cCCcccc-eeecCHH
Confidence 4788999999999999999999999999876 6777778888887776653322221 1133321 1222210
Q ss_pred CC----CC--CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHH----------HHHHHhccCCC-EEE
Q 011281 340 PL----EE--YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLV----------CLARVLLKKSK-VLV 402 (489)
Q Consensus 340 ~~----~~--~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl----------~laRall~~~~-ill 402 (489)
.. .. ...++=.+.+...|+.++.. |+..+.+ .+|+||+|+. ++|+++...|. +++
T Consensus 231 ~a~~~L~~~~~EmerR~~ll~~~Gv~~i~~-----yn~~~~~---~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 231 DAANALRWCVNEMERRYKLMSALGVRNLAG-----YNEKIAE---ADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSHHH-----HHHHHHH---HHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccHHH-----HHHHHHH---HhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 00 00 00111124555555544321 2222211 2478887652 46777888898 788
Q ss_pred EeCCCCCCCHHHHHHHHHHHH---Hh-c-CCceEEEEecCch
Q 011281 403 LDEATASVDTATDNLIQHTLG---QH-F-SDCTVITIAHRIT 439 (489)
Q Consensus 403 lDEpts~lD~~~~~~i~~~l~---~~-~-~~~t~i~itH~~~ 439 (489)
+||+++.+|... ..+.+.+. +. + .|.++|++|||++
T Consensus 303 IDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999887432 23333332 22 2 2779999999988
No 159
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.00 E-value=2.9e-13 Score=136.18 Aligned_cols=90 Identities=19% Similarity=0.181 Sum_probs=64.8
Q ss_pred EEEEEEECCCCCcceeeeeEEeeCC-------CEEEEECCCCCcHHHHHHHHhcCC----CCCCceEEECCEeCCCCChH
Q 011281 246 HGLQVRYAPHLPLVLRGLTCTFLGG-------MKTGIVGRTGSGKSTLIQTLFRIV----EPTAGLIAIDGIDISSIGLH 314 (489)
Q Consensus 246 ~~v~~~y~~~~~~~l~~i~l~i~~g-------~~~~ivG~sGsGKSTl~~~l~g~~----~~~~G~i~~~g~~~~~~~~~ 314 (489)
++++..|+. ..+++++++.+++| +.++|+||+|+|||||+++++|.+ .|.+|.+..++.++..+...
T Consensus 22 ~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 22 KSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp SSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred ccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence 344444533 24889999999877 899999999999999999999998 67788877666554321111
Q ss_pred HhhccceEEcCCCccCccchhhhc
Q 011281 315 DLRSRLSIIPQDPTMFEGSVHNNL 338 (489)
Q Consensus 315 ~~r~~i~~v~Q~~~lf~~ti~~Ni 338 (489)
..+..|.++.|...++. ++.|++
T Consensus 100 ~~~~~v~~iDE~~~l~~-~~~e~L 122 (334)
T 1in4_A 100 LERGDVLFIDEIHRLNK-AVEELL 122 (334)
T ss_dssp CCTTCEEEEETGGGCCH-HHHHHH
T ss_pred ccCCCEEEEcchhhcCH-HHHHHH
Confidence 11456899999877765 676665
No 160
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.00 E-value=2.8e-10 Score=108.33 Aligned_cols=166 Identities=14% Similarity=0.115 Sum_probs=86.8
Q ss_pred ceeee-eEEeeCCCEEEEECCCCCcHHHHHH-HHhcCCCCCCceEEECCEeCCCCChHHhh---ccceEEcCCCccCccc
Q 011281 259 VLRGL-TCTFLGGMKTGIVGRTGSGKSTLIQ-TLFRIVEPTAGLIAIDGIDISSIGLHDLR---SRLSIIPQDPTMFEGS 333 (489)
Q Consensus 259 ~l~~i-~l~i~~g~~~~ivG~sGsGKSTl~~-~l~g~~~~~~G~i~~~g~~~~~~~~~~~r---~~i~~v~Q~~~lf~~t 333 (489)
.|+.+ .--+++|+.++|+||+|||||||+. ++.+..++..+.+.+++. .+.++++ ..+++.+|+....
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e----~~~~~~~~~~~~~g~~~~~~~~~--- 83 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE----EHPVQVRQNMAQFGWDVKPYEEK--- 83 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS----SCHHHHHHHHHTTTCCCHHHHHH---
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc----CCHHHHHHHHHHcCCCHHHHhhC---
Confidence 45554 5568999999999999999999955 445544444444555442 2233332 2355555432110
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc--cCCCEEEEeCCCCCC-
Q 011281 334 VHNNLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL--KKSKVLVLDEATASV- 410 (489)
Q Consensus 334 i~~Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall--~~~~illlDEpts~l- 410 (489)
+|+...+.. ... .+. ... .+..+-+. +....+....++.++ .+|+++++|++++-+
T Consensus 84 --~~l~~~~~~-~~~-------~~~---~~~----~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~ 142 (247)
T 2dr3_A 84 --GMFAMVDAF-TAG-------IGK---SKE----YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYI 142 (247)
T ss_dssp --TSEEEEECS-TTT-------TCC-----C----CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTT
T ss_pred --CcEEEEecc-hhh-------ccc---ccc----cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhc
Confidence 111110000 000 000 000 00000000 112223333444443 479999999999887
Q ss_pred -CHHHHHHHHHHHHHh--cCCceEEEEecCchh--------h-hhcCEEEEEeC
Q 011281 411 -DTATDNLIQHTLGQH--FSDCTVITIAHRITS--------V-IDSDMVLLLSY 452 (489)
Q Consensus 411 -D~~~~~~i~~~l~~~--~~~~t~i~itH~~~~--------~-~~~d~i~~l~~ 452 (489)
|+.....+...+.+. ..+.|+|+++|.... + ..||.|+.|+.
T Consensus 143 ~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 143 NKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 553334444444432 247899999998765 3 34899999964
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.99 E-value=1e-12 Score=128.59 Aligned_cols=136 Identities=13% Similarity=0.133 Sum_probs=93.8
Q ss_pred EEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEE
Q 011281 244 DIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSII 323 (489)
Q Consensus 244 ~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 323 (489)
+++++...|.. +.+++++++++++| ++|+||+|||||||+++|++... .|.|.+++.++........++.++++
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 34555555532 34789999999999 99999999999999999999875 79999998776544444455668888
Q ss_pred cCCCc-cCcc-chhhhcC-CCCCC------cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHh
Q 011281 324 PQDPT-MFEG-SVHNNLD-PLEEY------ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVL 394 (489)
Q Consensus 324 ~Q~~~-lf~~-ti~~Ni~-~~~~~------~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRal 394 (489)
+|++. .++. ++.||+. ++... ..++..+.+ ..+. ..|||||+||..+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~---------~~ll-----------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLL-----------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH---------HHHH-----------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH---------HHHH-----------HHHhCCCCCCCEEEEEe
Confidence 88764 3433 5677773 21110 011112221 1111 12589999999999999
Q ss_pred ccCCCEEEEeCCC
Q 011281 395 LKKSKVLVLDEAT 407 (489)
Q Consensus 395 l~~~~illlDEpt 407 (489)
..+|++ ||++.
T Consensus 185 t~~p~~--ld~~l 195 (278)
T 1iy2_A 185 TNRPDI--LDPAL 195 (278)
T ss_dssp ESCTTS--SCHHH
T ss_pred cCCchh--CCHhH
Confidence 999987 67664
No 162
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.98 E-value=9.2e-11 Score=107.59 Aligned_cols=128 Identities=19% Similarity=0.274 Sum_probs=55.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC-------------CCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhh
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIVE-------------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHN 336 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 336 (489)
|++++|+||||||||||+++|+|+++ |..|++ +|.++...+.+.+...+ .++..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 666765 66555444444443332 1333333444444
Q ss_pred hcCCCCCCcHHHHHHHHHHcC---C----c--HHHHh--------------ccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 337 NLDPLEEYADEEIWEALDKCQ---L----G--NEVRK--------------NEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 337 Ni~~~~~~~~~~~~~~~~~~~---l----~--~~i~~--------------l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
|+ ++ .+.+++.++++... + . ..+.. -++.+..++.++|..-....+||++-|+.
T Consensus 76 ~~-yg--~~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~ 152 (186)
T 3a00_A 76 NY-YG--STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQA 152 (186)
T ss_dssp EE-EE--EEHHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC---------------------------
T ss_pred ee-cc--CcHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 43 21 12344444444311 0 0 00111 12456667777777767778889988887
Q ss_pred hc-----cCCCEEEEeC
Q 011281 394 LL-----KKSKVLVLDE 405 (489)
Q Consensus 394 ll-----~~~~illlDE 405 (489)
-+ +.++.+|..+
T Consensus 153 ~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 153 ELAYAETGAHDKVIVND 169 (186)
T ss_dssp ------CCCCSEEEECS
T ss_pred HHHhhcccCCcEEEECc
Confidence 65 5567777654
No 163
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.96 E-value=1.2e-09 Score=110.29 Aligned_cols=143 Identities=18% Similarity=0.183 Sum_probs=82.7
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE-CCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCCC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI-DGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEY 344 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~ 344 (489)
-+++|+.+.|.||+|||||||+..++.......|.+.+ +... ..+. ...+.+++.+++..++ ..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~i~-----------~~- 121 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLLVS-----------QP- 121 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCEEE-----------CC-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeEEe-----------cC-
Confidence 47899999999999999999988887654444444433 3211 1111 1111222211111100 00
Q ss_pred cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccC--CCEEEEeCCCCCC----------CH
Q 011281 345 ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKK--SKVLVLDEATASV----------DT 412 (489)
Q Consensus 345 ~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~--~~illlDEpts~l----------D~ 412 (489)
.+. .|-+.+++++.++ |+++++||+++-+ |+
T Consensus 122 -----------------------------------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 122 -----------------------------------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp -----------------------------------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred -----------------------------------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 011 2345678888765 9999999999988 32
Q ss_pred ---HHHHHHHHHHHHh-----cCCceEEEEecCch----------------hhhh-cCEEEEEeCCEEEEecC
Q 011281 413 ---ATDNLIQHTLGQH-----FSDCTVITIAHRIT----------------SVID-SDMVLLLSYGLIEEFDS 460 (489)
Q Consensus 413 ---~~~~~i~~~l~~~-----~~~~t~i~itH~~~----------------~~~~-~d~i~~l~~G~i~~~g~ 460 (489)
...+.+.+.+.++ ..+.|+|+++|-.. .+++ ||.++.++.+++...|+
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1112233333322 23789999999643 1444 89999998877655444
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.96 E-value=1.5e-11 Score=116.51 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=51.5
Q ss_pred cEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh--------
Q 011281 242 EVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL-------- 313 (489)
Q Consensus 242 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~-------- 313 (489)
.|+++|+...|+. ++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 5888888655421 456666 8999999999999999999999999999999999998844322
Q ss_pred HHhhccceEEcCC
Q 011281 314 HDLRSRLSIIPQD 326 (489)
Q Consensus 314 ~~~r~~i~~v~Q~ 326 (489)
..++..+++++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 2246678999884
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.96 E-value=6.2e-11 Score=128.54 Aligned_cols=155 Identities=12% Similarity=0.077 Sum_probs=101.8
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-ceEEECCEeCCCCChHHhhccceEEcCCC---------
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTA-GLIAIDGIDISSIGLHDLRSRLSIIPQDP--------- 327 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~--------- 327 (489)
.+++++++.+++|+.++|+||+|||||||+++|++++++.. |.+.+++.+.... ...++++|+..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence 48899999999999999999999999999999999999887 8888888766543 33577877654
Q ss_pred -------------ccCc-cchhhhcCCCCCCc-HHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHH
Q 011281 328 -------------TMFE-GSVHNNLDPLEEYA-DEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLAR 392 (489)
Q Consensus 328 -------------~lf~-~ti~~Ni~~~~~~~-~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laR 392 (489)
+.|. .++.+|+....... ...+... ......+.+.. ++..- .....+|+|++|++..++
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~----~~~~~-~~~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGD----VRHDP-FQSGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCE----ECCCC-C----CCCCGGGGEECCH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCce----EEech-hhcCCccccccccccCce
Confidence 2232 25555654321000 0000000 00000011111 11000 112348999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 011281 393 VLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 424 (489)
Q Consensus 393 all~~~~illlDEpts~lD~~~~~~i~~~l~~ 424 (489)
....++.+|+|||... |++.....+.+.|.+
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 899999999988874
No 166
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.93 E-value=1.8e-12 Score=124.83 Aligned_cols=138 Identities=13% Similarity=0.115 Sum_probs=94.3
Q ss_pred EEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceE
Q 011281 243 VDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSI 322 (489)
Q Consensus 243 i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 322 (489)
.+++++.+.|.. +.+++++++++++| ++|+||+|||||||++++++... .|.|.++|.++........++.++.
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 345666655632 34789999999999 99999999999999999999875 7899999877644433445566788
Q ss_pred EcCCCc-cCcc-chhhhcC-CCCC-C-----cHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHH
Q 011281 323 IPQDPT-MFEG-SVHNNLD-PLEE-Y-----ADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARV 393 (489)
Q Consensus 323 v~Q~~~-lf~~-ti~~Ni~-~~~~-~-----~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRa 393 (489)
++|+.. .++. ++.|++. ++.. . ..++..+.+ ..+.. .|||||+||..+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~---------~~ll~-----------~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLLV-----------EMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH---------HHHHH-----------HHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH---------HHHHH-----------HHhCCCCCCCEEEEE
Confidence 888764 3333 5667773 2111 0 111111111 11111 258999999999999
Q ss_pred hccCCCEEEEeCCCC
Q 011281 394 LLKKSKVLVLDEATA 408 (489)
Q Consensus 394 ll~~~~illlDEpts 408 (489)
+..+|++ +|++.-
T Consensus 160 ~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 160 ATNRPDI--LDPALL 172 (254)
T ss_dssp EESCGGG--SCGGGG
T ss_pred ccCCchh--CCHHHc
Confidence 9999987 788764
No 167
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.88 E-value=1.5e-09 Score=118.63 Aligned_cols=75 Identities=19% Similarity=0.127 Sum_probs=64.3
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcC
Q 011281 264 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP--TAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLD 339 (489)
Q Consensus 264 ~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~ 339 (489)
++++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|..+.++...+.++.+++.+|.+.++..+++.|+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nli 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEE
Confidence 456788999999999999999999999987655 78999 7898999998888889999999999988888888874
No 168
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.84 E-value=6.2e-10 Score=102.95 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=67.2
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC-------------CCCceEEECCEeCCCCChHHhhccceEEcCCCccC
Q 011281 264 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE-------------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 330 (489)
Q Consensus 264 ~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 330 (489)
|+...+|+.++|+||||||||||++.|++.++ |..|+ +||++..-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34455899999999999999999999999886 77887 689988888888888875 6888999
Q ss_pred ccchhhhcCCCCCCcHHHHHHHHHH
Q 011281 331 EGSVHNNLDPLEEYADEEIWEALDK 355 (489)
Q Consensus 331 ~~ti~~Ni~~~~~~~~~~~~~~~~~ 355 (489)
.+++.+|. ++ .+.+.++++++.
T Consensus 88 ~~~~~~n~-YG--t~~~~v~~~l~~ 109 (197)
T 3ney_A 88 FGSYQGNM-FG--TKFETVHQIHKQ 109 (197)
T ss_dssp EEEETTEE-EE--EEHHHHHHHHHT
T ss_pred hhhhhcee-cc--cchhhHHHHHhc
Confidence 99999995 54 245666666664
No 169
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.82 E-value=2.9e-09 Score=111.35 Aligned_cols=176 Identities=14% Similarity=0.127 Sum_probs=105.2
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-eEEECCEeCCCCChHHhhccc-eEEcCCCccCccchhh
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIAIDGIDISSIGLHDLRSRL-SIIPQDPTMFEGSVHN 336 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i-~~v~Q~~~lf~~ti~~ 336 (489)
.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .|.+.+.+ .+.+.+.+.+ +....-+ ...++.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~---~~~l~~ 265 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNIN---AQNLRT 265 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCC---HHHHHT
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCC---HHHHhc
Confidence 67777778999999999999999999999999987766445 56664433 3444444332 1111100 001111
Q ss_pred hcCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHH-
Q 011281 337 NLDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL--KKSKVLVLDEATASVDTA- 413 (489)
Q Consensus 337 Ni~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall--~~~~illlDEpts~lD~~- 413 (489)
...++++..++.+.+ +.+...| -.+.+ ...+|.+|.+ +.+|.+. .+|+++++|+++.-.++.
T Consensus 266 -----g~l~~~~~~~~~~a~---~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~ 330 (454)
T 2r6a_A 266 -----GKLTPEDWGKLTMAM---GSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGR 330 (454)
T ss_dssp -----SCCCHHHHHHHHHHH---HHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC
T ss_pred -----CCCCHHHHHHHHHHH---HHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCC
Confidence 122344333322221 1112111 11212 2467998765 6677776 579999999999877431
Q ss_pred -------HHHHHHHHHHHhc--CCceEEEEec---------C--ch--------hhhh-cCEEEEEeCCEE
Q 011281 414 -------TDNLIQHTLGQHF--SDCTVITIAH---------R--IT--------SVID-SDMVLLLSYGLI 455 (489)
Q Consensus 414 -------~~~~i~~~l~~~~--~~~t~i~itH---------~--~~--------~~~~-~d~i~~l~~G~i 455 (489)
....+.+.|+.+. .+.+||+++| + +. .+.+ ||.|++|..++.
T Consensus 331 ~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 331 SKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1234555565443 3789999999 1 32 3444 999999987654
No 170
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.79 E-value=4.9e-11 Score=121.39 Aligned_cols=136 Identities=16% Similarity=0.101 Sum_probs=86.9
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhh
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 337 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 337 (489)
.+++++++.+++|+.++|+||+|||||||+++|+|. .+|.+..-+ . +.+.++..+++++|...+| .++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--L---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHH
Confidence 478999999999999999999999999999999995 467775411 1 1122344588889987642 233
Q ss_pred cCCCCC----C---c----HHHHHHHHHH---cCCcHHHHhcccccc-----chhhcCCCCCCchHHHHHHHHHHhccCC
Q 011281 338 LDPLEE----Y---A----DEEIWEALDK---CQLGNEVRKNEGKLE-----SRVTENGENWSMGQRQLVCLARVLLKKS 398 (489)
Q Consensus 338 i~~~~~----~---~----~~~~~~~~~~---~~l~~~i~~l~~gld-----t~vge~G~~LSgGq~Qrl~laRall~~~ 398 (489)
+..... . . +..+.+.++- +.+. .+.|+.++ -.+..+-..+++|++||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~---tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLE---KKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEEC---CSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeec---cCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 322111 0 1 1222333220 0000 00011011 1234455668999999999998899999
Q ss_pred CEEE-EeCCCC
Q 011281 399 KVLV-LDEATA 408 (489)
Q Consensus 399 ~ill-lDEpts 408 (489)
++++ ||+|++
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999997
No 171
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.76 E-value=2.2e-09 Score=99.00 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=29.7
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 011281 388 VCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQ 424 (489)
Q Consensus 388 l~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~ 424 (489)
...||+++++|++.++| ||++|+...+.+++.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999888777777654
No 172
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.74 E-value=1.9e-09 Score=98.06 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=64.2
Q ss_pred eeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE--eCCCCC----hHHhhccceEEcCCCcc-C--c
Q 011281 261 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI--DISSIG----LHDLRSRLSIIPQDPTM-F--E 331 (489)
Q Consensus 261 ~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~--~~~~~~----~~~~r~~i~~v~Q~~~l-f--~ 331 (489)
+++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++-... ....+..|.+++|++.- | .
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 99999999999999999999988887775433221 110000 00234578999998631 1 0
Q ss_pred ---cchhhhcC--------C-CCCCcHHHHHHHHHHcCCcH
Q 011281 332 ---GSVHNNLD--------P-LEEYADEEIWEALDKCQLGN 360 (489)
Q Consensus 332 ---~ti~~Ni~--------~-~~~~~~~~~~~~~~~~~l~~ 360 (489)
-+|...+. . +...+.+++.+.++.+++..
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~ 137 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISP 137 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCT
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCC
Confidence 13322221 1 12345778888888887754
No 173
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.71 E-value=1.7e-09 Score=98.54 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=56.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEE----------CCEeCCCCChHHhhccceEEcCCCccCccchhhh
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEP-TAGLIAI----------DGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 337 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~-~~G~i~~----------~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 337 (489)
+|++++|+||||||||||+++|++++++ ..|.|.+ +|.+....+.+.+++. +.|+.+++..++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6999999999999999999999999874 4455543 5555555555665553 457777788888888
Q ss_pred cCCCCCCcHHHHHHHHH
Q 011281 338 LDPLEEYADEEIWEALD 354 (489)
Q Consensus 338 i~~~~~~~~~~~~~~~~ 354 (489)
. ++ .+.+.++++++
T Consensus 81 ~-yg--~~~~~i~~~l~ 94 (180)
T 1kgd_A 81 M-YG--TKLETIRKIHE 94 (180)
T ss_dssp E-EE--EEHHHHHHHHH
T ss_pred c-cc--ccHHHHHHHHH
Confidence 3 32 23555655554
No 174
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.62 E-value=4.7e-08 Score=102.36 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=73.4
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhc
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL 338 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni 338 (489)
.++++++++++| +.|+||+|+|||||++++++.... | ++.-+..+..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~-f~~is~~~~~ 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------P-FFHISGSDFV 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------C-EEEEEGGGTT
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------C-eeeCCHHHHH
Confidence 566777777777 889999999999999999983210 0 1111111111
Q ss_pred CCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCC----------
Q 011281 339 DPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA---------- 408 (489)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts---------- 408 (489)
.. .+| .|++++|-.+++|....|.|+++||+.+
T Consensus 87 ~~-------------------------------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~ 129 (476)
T 2ce7_A 87 EL-------------------------------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129 (476)
T ss_dssp TC-------------------------------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC------
T ss_pred HH-------------------------------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccC
Confidence 00 011 2678899999999999999999999943
Q ss_pred CCCHHHHHHHHHHHHHh-----cCCceEEEEecCchhh
Q 011281 409 SVDTATDNLIQHTLGQH-----FSDCTVITIAHRITSV 441 (489)
Q Consensus 409 ~lD~~~~~~i~~~l~~~-----~~~~t~i~itH~~~~~ 441 (489)
+.|.+.++.+.+.+... ..+..+|..||+.+.+
T Consensus 130 g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 130 GGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ---CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 56665555444444322 1356888999998654
No 175
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.61 E-value=3.7e-09 Score=101.64 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=35.7
Q ss_pred cEEEEEE-EEEECCCCCcceeeeeEEeeC---CCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 242 EVDIHGL-QVRYAPHLPLVLRGLTCTFLG---GMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 242 ~i~~~~v-~~~y~~~~~~~l~~i~l~i~~---g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.++++|+ +|+|++. ..+|+|+||++++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~-~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEE-QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCc-chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 9999333 4699999999999 9999999999999999999999855
No 176
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.61 E-value=7.1e-09 Score=96.36 Aligned_cols=50 Identities=28% Similarity=0.302 Sum_probs=41.7
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCC
Q 011281 265 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDP 340 (489)
Q Consensus 265 l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~ 340 (489)
=++++|++++|+|++||||||+++.|++.++ .+.+++|+++++++ +|+..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~ 65 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIET 65 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCB
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhc
Confidence 3678899999999999999999999999874 37789999888865 45543
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.59 E-value=1.8e-08 Score=93.14 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=41.9
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccC
Q 011281 265 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMF 330 (489)
Q Consensus 265 l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 330 (489)
+++++|++++|+|||||||||++++|++++.|+.| +.+ +....... ...+..++|++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHH
Confidence 46889999999999999999999999999977655 222 22222211 11233478888876543
No 178
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.55 E-value=6.5e-09 Score=96.26 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=44.3
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHh-hccceEEcCCCccC
Q 011281 264 TCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDL-RSRLSIIPQDPTMF 330 (489)
Q Consensus 264 ~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i~~v~Q~~~lf 330 (489)
.++.++|++++|+|||||||||++++|++.+ |.+.++|.++.. .... +..+++++|++..+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccc
Confidence 3667789999999999999999999999987 889999977642 2222 23578888876544
No 179
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.52 E-value=3.3e-08 Score=100.23 Aligned_cols=137 Identities=20% Similarity=0.174 Sum_probs=82.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC-----------CCCceEEECCEeCCCCChHHhhccceEEcCCCcc----Cccchh-
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIVE-----------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTM----FEGSVH- 335 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~~-----------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l----f~~ti~- 335 (489)
.++|+|++|||||||++.|+|... |..|.|.++|.++. +....|++.+.|.- |..|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999865 67799999997652 33456777665431 222322
Q ss_pred ----hhcCC----CCCC--cHHH---HHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHH----HHh-ccC
Q 011281 336 ----NNLDP----LEEY--ADEE---IWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLA----RVL-LKK 397 (489)
Q Consensus 336 ----~Ni~~----~~~~--~~~~---~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~la----Ral-l~~ 397 (489)
+.+.+ .+.. .++. +.+.++..++. ..| --.|+...-.+|+|++||+.++ +++ ..+
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~----~~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVS----GKP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC----SCC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC----CCC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 12211 1111 1121 23344443322 112 0111222233688888988877 666 444
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 011281 398 SKVLVLDEATASVDTATDNLIQHTLGQH 425 (489)
Q Consensus 398 ~~illlDEpts~lD~~~~~~i~~~l~~~ 425 (489)
|++ +|||++|.+.-..+.+.|.+.
T Consensus 328 ~~~----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 328 FDV----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp EEE----EECBTTTTBSHHHHHHHHHHH
T ss_pred CcE----EEEECCCCcCHHHHHHHHHHH
Confidence 554 899999998888888777653
No 180
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.51 E-value=4e-09 Score=111.08 Aligned_cols=126 Identities=13% Similarity=0.131 Sum_probs=88.3
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCc-cCcc-chh
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPT-MFEG-SVH 335 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf~~-ti~ 335 (489)
.+++++++++++| +.|+||+|+|||||+++|++... .|.+.+++.++.+.......+.+..++|... .+++ .+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 4788999999999 99999999999999999999875 6889999988765444445566778888775 3344 456
Q ss_pred hhcC-CCCC------CcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCC
Q 011281 336 NNLD-PLEE------YADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATA 408 (489)
Q Consensus 336 ~Ni~-~~~~------~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts 408 (489)
|++. ++.. ...++..+.+.. .+. .|||||+|+..+++|...+|++ ||||.-
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l~~-----LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTLNQ-----LLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHHHH-----HHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHHHH-----HHH---------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 7773 2211 012222222211 111 1478888888889999888887 888875
Q ss_pred C
Q 011281 409 S 409 (489)
Q Consensus 409 ~ 409 (489)
.
T Consensus 188 r 188 (499)
T 2dhr_A 188 R 188 (499)
T ss_dssp S
T ss_pred c
Confidence 3
No 181
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.49 E-value=3.3e-09 Score=98.27 Aligned_cols=50 Identities=26% Similarity=0.288 Sum_probs=43.9
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE--EECCEeC
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI--AIDGIDI 308 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i--~~~g~~~ 308 (489)
.+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ .+||.++
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 35677888889999999999999999999999999987 77988 8887554
No 182
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.46 E-value=8.6e-09 Score=109.87 Aligned_cols=87 Identities=15% Similarity=0.210 Sum_probs=62.0
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-eE-EECCEeCCC-------CChH---HhhccceEEcCCCccCccc
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LI-AIDGIDISS-------IGLH---DLRSRLSIIPQDPTMFEGS 333 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G-~i-~~~g~~~~~-------~~~~---~~r~~i~~v~Q~~~lf~~t 333 (489)
.+++|++++|+|+||||||||+++|+|.+.|.+| ++ ++||.++.. ++.. ..++.+++++|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 5789999999999999999999999999999887 67 489876532 2221 2345678888863 3
Q ss_pred hhhhcCCCC-----CCcHHHHHHHHHHcC
Q 011281 334 VHNNLDPLE-----EYADEEIWEALDKCQ 357 (489)
Q Consensus 334 i~~Ni~~~~-----~~~~~~~~~~~~~~~ 357 (489)
..+|+.+.. ....++++++++..+
T Consensus 440 ~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 440 KNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred hcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 445553321 123456777888766
No 183
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.45 E-value=8.2e-07 Score=89.43 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=44.4
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE-EECCEeCCCCChHHhhccceEEcCCCcc
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI-AIDGIDISSIGLHDLRSRLSIIPQDPTM 329 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 329 (489)
-+++|+.+.|.||+|||||||+..+++...+..|.+ ++++.+.. +. .+.+.+++.+|+..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSLLI 118 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGCEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhhhh
Confidence 378999999999999999999999999887777876 55553321 22 244556766665443
No 184
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.44 E-value=3e-08 Score=98.81 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=54.4
Q ss_pred eeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCCh----HHh-----hccceEE-cCCC
Q 011281 260 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGL----HDL-----RSRLSII-PQDP 327 (489)
Q Consensus 260 l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~-----r~~i~~v-~Q~~ 327 (489)
+++++|++++|++++++||+||||||++..|++.+.+..|+|.+.+.|...... ..+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 357888888999999999999999999999999999999999998877754321 233 4567777 5553
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.40 E-value=4.3e-07 Score=91.89 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=36.0
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCceEEECCEe
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR--IVEPTAGLIAIDGID 307 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g--~~~~~~G~i~~~g~~ 307 (489)
+|++++++++ .+++||++|||||||++.|+| ++++..|.+......
T Consensus 26 ~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~ 73 (360)
T 3t34_A 26 ALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLV 73 (360)
T ss_dssp CC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEE
T ss_pred ccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceE
Confidence 7888999888 999999999999999999999 778888877655443
No 186
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.40 E-value=1.2e-07 Score=87.90 Aligned_cols=126 Identities=12% Similarity=0.174 Sum_probs=73.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhcCCCCCCcHHHHHH
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNLDPLEEYADEEIWE 351 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 351 (489)
+++|+||+||||||+.+.|+++ |...+|+ +.+.+.+. + ++ ...+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~--------d~~~~~~~---~-----~~-------------~~~~~~ 49 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA--------DVVAREVV---A-----KD-------------SPLLSK 49 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH--------HHHHHHTT---C-----SS-------------CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch--------HHHHHHHc---c-----CC-------------hHHHHH
Confidence 6899999999999999999993 5555544 22222111 0 00 112222
Q ss_pred HHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceE
Q 011281 352 ALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTV 431 (489)
Q Consensus 352 ~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~ 431 (489)
..+..|.. .-.+.|+.+|..+++..+.+|..+-.+ ++.++|...+.+.+.+... .+.++
T Consensus 50 i~~~~g~~------------------~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~v 108 (206)
T 1jjv_A 50 IVEHFGAQ------------------ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYT 108 (206)
T ss_dssp HHHHHCTT------------------CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEE
T ss_pred HHHHhCHH------------------HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEE
Confidence 22222211 112678999999999988887643332 3345666666666555433 35688
Q ss_pred EEEecCchhh---hhcCEEEEEeC
Q 011281 432 ITIAHRITSV---IDSDMVLLLSY 452 (489)
Q Consensus 432 i~itH~~~~~---~~~d~i~~l~~ 452 (489)
|+-+|.+... ..||.+++++-
T Consensus 109 v~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 109 LFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp EEECTTTTTTTCGGGCSEEEEEEC
T ss_pred EEEechhhhcCcHhhCCEEEEEEC
Confidence 8888877654 45899999864
No 187
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.36 E-value=7.8e-07 Score=89.88 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=48.2
Q ss_pred CCCCchHHHHHHHHHHhccCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhcCCceEEEEe--cCch
Q 011281 378 ENWSMGQRQLVCLARVLLKKSKVLVLD-EATASVDTATDNLIQHTLGQHFSDCTVITIA--HRIT 439 (489)
Q Consensus 378 ~~LSgGq~Qrl~laRall~~~~illlD-Epts~lD~~~~~~i~~~l~~~~~~~t~i~it--H~~~ 439 (489)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.....++.+|+|. |++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 346899999876 55555677788999 9999999998888888877655578888888 7764
No 188
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.34 E-value=9e-08 Score=89.18 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=27.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 296 (489)
++|+.++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999987
No 189
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=2.3e-07 Score=85.61 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=24.9
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 257 PLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 257 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
..+++|+||++++|++++|+||+||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35899999999999999999999999999999999866
No 190
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.31 E-value=3e-08 Score=93.98 Aligned_cols=65 Identities=15% Similarity=0.086 Sum_probs=49.6
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC------ChHH----hhccceEEcCCCccCc
Q 011281 263 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI------GLHD----LRSRLSIIPQDPTMFE 331 (489)
Q Consensus 263 i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~------~~~~----~r~~i~~v~Q~~~lf~ 331 (489)
-+.+.++|++++|.|++||||||++++|+++ .|+|.+++.+...+ .... .++.+++++|.+.++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3445678999999999999999999999997 78999998876421 1111 1456888999876654
No 191
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.30 E-value=3.2e-07 Score=101.92 Aligned_cols=64 Identities=14% Similarity=0.073 Sum_probs=51.4
Q ss_pred CCchHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhcCC-ceEEE-EecCchhhhh
Q 011281 380 WSMGQRQLVCLARVLLKKSKVLVLDEATA-SVDTATDNLIQHTLGQHFSD-CTVIT-IAHRITSVID 443 (489)
Q Consensus 380 LSgGq~Qrl~laRall~~~~illlDEpts-~lD~~~~~~i~~~l~~~~~~-~t~i~-itH~~~~~~~ 443 (489)
+|+|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+....++ +++++ .||+.+.+..
T Consensus 191 ~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred ECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 58999999999999999999999999997 89988766666666555543 56666 5898776654
No 192
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.17 E-value=3.1e-06 Score=84.63 Aligned_cols=105 Identities=20% Similarity=0.208 Sum_probs=66.0
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCccchhhhc
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNNL 338 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni 338 (489)
.|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....+.|. |++=
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl-------------------~fSl------------- 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA-------------------VFSL------------- 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE-------------------EEES-------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE-------------------EEeC-------------
Confidence 45555556899999999999999999999888764322222222 2111
Q ss_pred CCCCCCcHHHHHH-HH-HHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 011281 339 DPLEEYADEEIWE-AL-DKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKVLVLDEATASVD 411 (489)
Q Consensus 339 ~~~~~~~~~~~~~-~~-~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~illlDEpts~lD 411 (489)
+.+.+++.. .+ ..+++.. .++-. | .||++++||++.|...+.+++++|.|+|...+|
T Consensus 83 ----Ems~~ql~~Rlls~~~~v~~--~~l~~---------g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 ----EMSAEQLALRALSDLTSINM--HDLES---------G-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ----SSCHHHHHHHHHHHHHCCCH--HHHHH---------T-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ----CCCHHHHHHHHHHHhhCCCH--HHHhc---------C-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 122333221 11 1122211 11100 1 589999999999999999999999999876544
No 193
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.16 E-value=1.3e-06 Score=87.10 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=25.5
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
-+++|+.+.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888764
No 194
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.14 E-value=3.3e-07 Score=92.35 Aligned_cols=53 Identities=21% Similarity=0.247 Sum_probs=48.2
Q ss_pred ccEEEEEEEEEECCCCCccee--------------eeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 241 GEVDIHGLQVRYAPHLPLVLR--------------GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~--------------~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+.+.|+||++.||... ..|+ |+.+.+.+|++++|+||+|||||||++.|++..
T Consensus 132 ~ri~Fe~ltp~yP~er-~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHANSR-LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCCSB-CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCc-cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4689999999998764 4788 899999999999999999999999999999875
No 195
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.14 E-value=5.2e-06 Score=85.67 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=35.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 308 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~ 308 (489)
++.+++++||+||||||++..|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 4789999999999999999999999998888998866554
No 196
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.10 E-value=5.4e-07 Score=83.33 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=39.2
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSI 311 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~ 311 (489)
..++|++++|+|+|||||||+++.|++.+++..|.|.+.+.+....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 3567899999999999999999999999988889998876655433
No 197
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.09 E-value=2.5e-06 Score=87.83 Aligned_cols=148 Identities=18% Similarity=0.116 Sum_probs=85.2
Q ss_pred eeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH-hhccceEEcCCCccCccchhhhcC
Q 011281 261 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHD-LRSRLSIIPQDPTMFEGSVHNNLD 339 (489)
Q Consensus 261 ~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~v~Q~~~lf~~ti~~Ni~ 339 (489)
++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|.......+ ++.. .-..|+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-------------~~~~gv~ 155 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-------------GEKVGVP 155 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-------------HHHHTCC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-------------cccCCcc
Confidence 456776 89999999999999999999999999999999999877664422211 1110 0011222
Q ss_pred CC---CCCcHHHH-HHHHHHcCCcHHHHhccccccchhhcCCCCCC---chHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 011281 340 PL---EEYADEEI-WEALDKCQLGNEVRKNEGKLESRVTENGENWS---MGQRQLVCLARVLLKKSKVLVLDEATASVDT 412 (489)
Q Consensus 340 ~~---~~~~~~~~-~~~~~~~~l~~~i~~l~~gldt~vge~G~~LS---gGq~Qrl~laRall~~~~illlDEpts~lD~ 412 (489)
+. ...+..++ .++++.+ ..+++|..|=+-+-.++ ....+...+++++..++-++++| ++++.|.
T Consensus 156 v~~~~~~~~p~~i~~~~l~~~--------~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~a 226 (425)
T 2ffh_A 156 VLEVMDGESPESIRRRVEEKA--------RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEA 226 (425)
T ss_dssp EEECCTTCCHHHHHHHHHHHH--------HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHH
T ss_pred EEecCCCCCHHHHHHHHHHHH--------HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHH
Confidence 11 11233333 3333322 02355555544333332 23566677888886666677787 5566554
Q ss_pred HHHHHHHHHHHHhcCCceEEEEec
Q 011281 413 ATDNLIQHTLGQHFSDCTVITIAH 436 (489)
Q Consensus 413 ~~~~~i~~~l~~~~~~~t~i~itH 436 (489)
... .+.+... -+.+.|++|+
T Consensus 227 v~~---a~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 227 LSV---ARAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HHH---HHHHHHH-TCCCEEEEES
T ss_pred HHH---HHHHHhc-CCceEEEEeC
Confidence 422 1223222 2456777775
No 198
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.98 E-value=9.1e-07 Score=87.87 Aligned_cols=44 Identities=32% Similarity=0.428 Sum_probs=35.4
Q ss_pred ceeeeeEEeeCCC------EEEEECCCCCcHHHHHHHHhcCCC--CCCceEE
Q 011281 259 VLRGLTCTFLGGM------KTGIVGRTGSGKSTLIQTLFRIVE--PTAGLIA 302 (489)
Q Consensus 259 ~l~~i~l~i~~g~------~~~ivG~sGsGKSTl~~~l~g~~~--~~~G~i~ 302 (489)
.|++++..+.+++ ++||+|||||||||++++|.+++. |.+|.+.
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~ 126 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVE 126 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEE
Confidence 5667777776666 899999999999999999999987 4555543
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.97 E-value=1.6e-06 Score=77.94 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=33.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 309 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~ 309 (489)
.+|++++|+||+||||||+++.|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 78889886654
No 200
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.95 E-value=2.1e-06 Score=89.28 Aligned_cols=67 Identities=18% Similarity=0.392 Sum_probs=44.1
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHhc-CCceEEEEecCc-hhhhh-cCEEEE-EeCCEEEEecChh
Q 011281 396 KKSKVLVLDEATASVDT-ATDNLIQHTLGQHF-SDCTVITIAHRI-TSVID-SDMVLL-LSYGLIEEFDSPT 462 (489)
Q Consensus 396 ~~~~illlDEpts~lD~-~~~~~i~~~l~~~~-~~~t~i~itH~~-~~~~~-~d~i~~-l~~G~i~~~g~~~ 462 (489)
.++++|++||+..-.+. .+++.+...+.... .++.+|++||+. ..+.. .+++.- ++.|.+++.++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887764 56777777776643 568899999984 33222 233322 4556666655543
No 201
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.94 E-value=1.5e-05 Score=80.50 Aligned_cols=45 Identities=13% Similarity=0.031 Sum_probs=33.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCceEEEEecCchhh
Q 011281 396 KKSKVLVLDEATASVDTATDNLIQHTLGQHF----SDCTVITIAHRITSV 441 (489)
Q Consensus 396 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~----~~~t~i~itH~~~~~ 441 (489)
.+|.++++||+... |+.....+.+.+.... .+.++|+++|+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999876 8877777777765432 366888999988543
No 202
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.91 E-value=2.3e-05 Score=76.45 Aligned_cols=71 Identities=8% Similarity=0.025 Sum_probs=44.4
Q ss_pred CchHHHHHHHHHHhccCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHhc-----CCceEEEEecCchhh----
Q 011281 381 SMGQRQLVCLARVLLKKSKVLVLDEATASVDTA----------TDNLIQHTLGQHF-----SDCTVITIAHRITSV---- 441 (489)
Q Consensus 381 SgGq~Qrl~laRall~~~~illlDEpts~lD~~----------~~~~i~~~l~~~~-----~~~t~i~itH~~~~~---- 441 (489)
+++++.|-.++++...+|.++++||+.+-++.. ....+...+.... .+..+|.+|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777888888888899999999998776532 1223333343321 123567778876533
Q ss_pred -hhcCEEEEEe
Q 011281 442 -IDSDMVLLLS 451 (489)
Q Consensus 442 -~~~d~i~~l~ 451 (489)
+++++++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 3467766553
No 203
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.90 E-value=5.5e-06 Score=83.19 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=25.6
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
-+++|+.+.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988874
No 204
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.87 E-value=2.4e-06 Score=85.50 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=37.1
Q ss_pred cceeeeeEEeeCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCc
Q 011281 258 LVLRGLTCTFLGGMK--TGIVGRTGSGKSTLIQTLFRIVEPTAG 299 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~--~~ivG~sGsGKSTl~~~l~g~~~~~~G 299 (489)
.+++.++..++.|+. +.+.||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 478889999999988 999999999999999999998766544
No 205
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.86 E-value=8.3e-05 Score=70.19 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=23.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCc
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIVEPTAG 299 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~~~~~G 299 (489)
+++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997665554
No 206
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.82 E-value=5.6e-06 Score=81.60 Aligned_cols=148 Identities=21% Similarity=0.220 Sum_probs=75.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE-CCEeCCCCChHHhhccceEEcCCCcc--CccchhhhcCCCCC-Cc
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI-DGIDISSIGLHDLRSRLSIIPQDPTM--FEGSVHNNLDPLEE-YA 345 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~l--f~~ti~~Ni~~~~~-~~ 345 (489)
+.+++|+|++|+|||||++.|+|.- +.+ .+.+-. ..++..++++++..- |-+| .+.. ..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~~iDT------pG~~~~~ 70 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAIYVDT------PGLHMEE 70 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEEEESS------SSCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEEEEEC------cCCCccc
Confidence 4489999999999999999999963 221 111111 112345677765431 2122 1111 01
Q ss_pred HHHHHHHHHHcCCcHHHHhccccccchh--hcCCCCCCchHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHHH-HHHHHH
Q 011281 346 DEEIWEALDKCQLGNEVRKNEGKLESRV--TENGENWSMGQRQLVCLARVLL--KKSKVLVLDEATASVDTAT-DNLIQH 420 (489)
Q Consensus 346 ~~~~~~~~~~~~l~~~i~~l~~gldt~v--ge~G~~LSgGq~Qrl~laRall--~~~~illlDEpts~lD~~~-~~~i~~ 420 (489)
...+.+.+... ....+ ...|..+ -+... +|+|++ .+++++. ..|.++++ +.+|... ...+.+
T Consensus 71 ~~~l~~~~~~~-~~~~l----~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~ 137 (301)
T 1ega_A 71 KRAINRLMNKA-ASSSI----GDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLP 137 (301)
T ss_dssp HHHHHHHHTCC-TTSCC----CCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHH
T ss_pred hhhHHHHHHHH-HHHHH----hcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHH
Confidence 11111111100 00111 1122211 12222 898886 4566665 67888888 6788765 455555
Q ss_pred HHHHhcC--C--ceEEEEecCchhhhh-cCEE
Q 011281 421 TLGQHFS--D--CTVITIAHRITSVID-SDMV 447 (489)
Q Consensus 421 ~l~~~~~--~--~t~i~itH~~~~~~~-~d~i 447 (489)
.+..+.+ + .++.+.+|.-..+.. .|.|
T Consensus 138 ~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 138 HLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp HHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred HHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 5554432 2 356666777666554 4444
No 207
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.82 E-value=2.8e-06 Score=90.64 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=43.8
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCC
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDP 327 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 327 (489)
.++.++++++ +|+.++|+||+|||||||+++|++...+..|.|.++|......-....+..+++++|..
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~ 165 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRI 165 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CH
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHH
Confidence 3677888888 89999999999999999999999999999999988875432111122334566666543
No 208
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.76 E-value=4.4e-06 Score=93.27 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=29.1
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 011281 265 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 265 l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 296 (489)
|.+++|+.+.|+||+|||||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999999998753
No 209
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.74 E-value=1.4e-05 Score=82.91 Aligned_cols=61 Identities=28% Similarity=0.452 Sum_probs=40.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCC------------CCCceEEECCEeCCCCChHHhhccceEEcCCCccCc
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIVE------------PTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE 331 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~ 331 (489)
-+++|+|++|||||||++.|+|... |.+|.+.++|.++.-++....++..++.+|....|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 3799999999999999999999853 778999999997765555555555556556555554
No 210
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.74 E-value=1.1e-05 Score=72.08 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 305 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 305 (489)
.|+.++|+||+||||||++++|++.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 55654
No 211
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.71 E-value=5e-06 Score=75.02 Aligned_cols=40 Identities=28% Similarity=0.424 Sum_probs=32.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc--eEEECCEeC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG--LIAIDGIDI 308 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G--~i~~~g~~~ 308 (489)
++|++++|+|++||||||+++.|++.++| .| .|.+|+..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 46999999999999999999999998765 56 566665433
No 212
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.70 E-value=1e-05 Score=76.54 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=43.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---cCCCCCCceEE--------ECCEeCCCCC-hHHhhccceEEc------CCCccC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLF---RIVEPTAGLIA--------IDGIDISSIG-LHDLRSRLSIIP------QDPTMF 330 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~---g~~~~~~G~i~--------~~g~~~~~~~-~~~~r~~i~~v~------Q~~~lf 330 (489)
++-+++|.||+||||||+.+.|+ |+...+.|.+. -+|.+..+.. ..++...+.+.+ |..+++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 34589999999999999999998 55455666652 3455544322 334455566655 333444
Q ss_pred ccchhhhc
Q 011281 331 EGSVHNNL 338 (489)
Q Consensus 331 ~~ti~~Ni 338 (489)
...+.++|
T Consensus 88 g~~v~~~i 95 (233)
T 3r20_A 88 GEDVSSEI 95 (233)
T ss_dssp TEECTTGG
T ss_pred Ceehhhhh
Confidence 44555554
No 213
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.70 E-value=1e-05 Score=74.20 Aligned_cols=42 Identities=29% Similarity=0.248 Sum_probs=31.1
Q ss_pred EEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhc
Q 011281 249 QVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 249 ~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
+++|++-. .++++++++.+++ +++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~~~-~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFS-SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------C-HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHH-HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 45666543 4889999988887 588999999999999999987
No 214
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.69 E-value=6.3e-05 Score=74.50 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=29.0
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhc
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
.|+.+.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4666665689999999999999999999888774
No 215
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.68 E-value=1e-05 Score=76.50 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=32.3
Q ss_pred eeeeeEEee---CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 011281 260 LRGLTCTFL---GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 304 (489)
Q Consensus 260 l~~i~l~i~---~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~ 304 (489)
|.++|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 555566555 8999999999999999999999999987 6666543
No 216
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.66 E-value=1.5e-05 Score=80.19 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=26.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPT 297 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~ 297 (489)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999876553
No 217
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.65 E-value=5.2e-06 Score=83.29 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=45.1
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeC
Q 011281 258 LVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 308 (489)
Q Consensus 258 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~ 308 (489)
.+++++++++.+|.+++|+|++|+|||||++.|++.+.+..|+|.+-+.+.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 378889999999999999999999999999999999888888887766554
No 218
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.63 E-value=3.5e-05 Score=72.80 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=66.6
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHhhccceEEcCCCccCc-cchhhhcCCCCCCc
Q 011281 267 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISSIGLHDLRSRLSIIPQDPTMFE-GSVHNNLDPLEEYA 345 (489)
Q Consensus 267 i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~ 345 (489)
+.+|+.++++|||||||||++.+++.......|. ...+.++.+.|.... .++.+|+...
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~---- 132 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFE---- 132 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHT----
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHH----
Confidence 4579999999999999999887664321111110 124566667665433 2455554210
Q ss_pred HHHHHHHHHHcCCcHHHHhccccccchhhc----CCCC---CCchHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHH
Q 011281 346 DEEIWEALDKCQLGNEVRKNEGKLESRVTE----NGEN---WSMGQRQLVCLARVLLKKSKVLVLDEATA-SVDTATDNL 417 (489)
Q Consensus 346 ~~~~~~~~~~~~l~~~i~~l~~gldt~vge----~G~~---LSgGq~Qrl~laRall~~~~illlDEpts-~lD~~~~~~ 417 (489)
.+.. + ....|+...... .+.. -+.|.-.+. .+..+++-+++|+||+-. ++|......
T Consensus 133 ----------~~~~--~-~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~ 197 (235)
T 3llm_A 133 ----------RGEE--P-GKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLV 197 (235)
T ss_dssp ----------TTCC--T-TSSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHH
T ss_pred ----------hccc--c-CceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHH
Confidence 0000 0 000111111110 0000 144554444 345689999999999976 577766544
Q ss_pred HHHHHHHhcCC
Q 011281 418 IQHTLGQHFSD 428 (489)
Q Consensus 418 i~~~l~~~~~~ 428 (489)
..+.+....++
T Consensus 198 ~l~~i~~~~~~ 208 (235)
T 3llm_A 198 VLRDVVQAYPE 208 (235)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhhCCC
Confidence 44445444444
No 219
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.59 E-value=0.00033 Score=70.49 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.9
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 267 FLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 267 i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++|+.+.|.||+|||||||+..++.-.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998777543
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.57 E-value=1e-05 Score=75.15 Aligned_cols=42 Identities=26% Similarity=0.232 Sum_probs=36.9
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc--eEEECCE
Q 011281 265 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG--LIAIDGI 306 (489)
Q Consensus 265 l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G--~i~~~g~ 306 (489)
+.+++|..++|+|++||||||+.+.|++.++|..| .+.+++.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 45678999999999999999999999999987888 7888753
No 221
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.56 E-value=5.3e-08 Score=94.20 Aligned_cols=74 Identities=11% Similarity=-0.015 Sum_probs=65.4
Q ss_pred hccccccchhhcCCCCCCchHHHHHHHHHHhccCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHHhcCCceEE
Q 011281 364 KNEGKLESRVTENGENWSMGQRQLVCLARVLLKKSKV--LVLDEATASVDTAT---------DNLIQHTLGQHFSDCTVI 432 (489)
Q Consensus 364 ~l~~gldt~vge~G~~LSgGq~Qrl~laRall~~~~i--lllDEpts~lD~~~---------~~~i~~~l~~~~~~~t~i 432 (489)
.++.++++.|++++..+|+| ||++++|+++.+|++ +|+||+|+++|... +..+++.+....+|+|.+
T Consensus 157 ~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~ 234 (261)
T 2eyu_A 157 VLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITL 234 (261)
T ss_dssp HHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCH
T ss_pred HHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCH
Confidence 46779999999999999999 899999999999999 99999999999863 335677777778899999
Q ss_pred EEecCch
Q 011281 433 TIAHRIT 439 (489)
Q Consensus 433 ~itH~~~ 439 (489)
.++||++
T Consensus 235 ~~a~r~~ 241 (261)
T 2eyu_A 235 EDAMEAS 241 (261)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9999976
No 222
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.56 E-value=1.2e-05 Score=74.31 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=26.4
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
...+|..++|+|||||||||+.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998764
No 223
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.55 E-value=0.00031 Score=66.93 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=24.0
Q ss_pred eeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 260 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 260 l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
++++++..++| +.|+||+|+||||+++++++.+.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 33444444444 89999999999999999998764
No 224
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.55 E-value=6.7e-05 Score=74.26 Aligned_cols=28 Identities=25% Similarity=0.161 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 296 (489)
.+..+.|.||+|+|||||++.+++...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3568999999999999999999986543
No 225
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.53 E-value=8.9e-05 Score=72.59 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=27.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceE
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 301 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i 301 (489)
...+.++||+|+||||+++.+++...+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35789999999999999999999887666543
No 226
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.53 E-value=1.8e-05 Score=79.66 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=35.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 309 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~ 309 (489)
++.+++|+|++|||||||++.|+|.+.|.+|+|.+.+.+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 46889999999999999999999998888888887766543
No 227
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.52 E-value=0.00022 Score=69.95 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=27.0
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 265 CTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 265 l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999999999999865
No 228
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.47 E-value=7.2e-05 Score=66.78 Aligned_cols=27 Identities=41% Similarity=0.523 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
++|.+++|+|++|+|||||++.+++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 229
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.47 E-value=7e-05 Score=67.99 Aligned_cols=33 Identities=33% Similarity=0.340 Sum_probs=20.8
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhc
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
++++++++.++. +++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678899887776 789999999999999999997
No 230
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.46 E-value=6.7e-05 Score=65.82 Aligned_cols=31 Identities=32% Similarity=0.563 Sum_probs=24.8
Q ss_pred eeeeEEeeCCCEEEEECCCCCcHHHHHHHHhc
Q 011281 261 RGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 261 ~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
++..+++.+| ..+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445566554 899999999999999999873
No 231
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.45 E-value=4.3e-05 Score=70.05 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=23.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~~~ 296 (489)
..+.|.||+|+|||||++.++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999986543
No 232
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.41 E-value=2.8e-05 Score=77.55 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=32.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchh
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITS 440 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 440 (489)
++.++++|| ...+++.....+.+.+.....+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 6788888888888888765545567777776654
No 233
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.40 E-value=7.1e-05 Score=67.81 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=26.7
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHhcC
Q 011281 262 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 262 ~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
++|++.++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999885
No 234
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.39 E-value=0.00038 Score=67.22 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=24.7
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 267 FLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 267 i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
++++..+.|.||+|+||||+++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998864
No 235
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.37 E-value=0.00026 Score=73.76 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHhccCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhh
Q 011281 382 MGQRQLVCLARVLLKKSKVLVLDEA-TASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVI 442 (489)
Q Consensus 382 gGq~Qrl~laRall~~~~illlDEp-ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 442 (489)
+.|.+....++..+++++++|+... +.++.... ..+.+.+++ .++.+|+|.+..+...
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC----
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccchh
Confidence 4588888889999999998775544 44454443 455555544 4778888888876543
No 236
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.36 E-value=6.1e-05 Score=70.40 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
++..+.|.||+|+||||+++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987654
No 237
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.36 E-value=0.00013 Score=67.72 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=33.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhh
Q 011281 396 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSV 441 (489)
Q Consensus 396 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 441 (489)
.++.++++||+-. +|+.....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999766 78887777777776544456788888876544
No 238
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.32 E-value=0.00079 Score=58.34 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 296 (489)
+.+..+.|.||+|+|||++++.|......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 34667999999999999999999886543
No 239
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.28 E-value=0.00094 Score=63.47 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
=+++|+|++|+|||||++.|+|--
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999853
No 240
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.27 E-value=3.2e-05 Score=75.95 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=41.3
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 011281 263 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDISS 310 (489)
Q Consensus 263 i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~~ 310 (489)
++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 666666 99999999999999999999999999889999987777644
No 241
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.24 E-value=6.8e-05 Score=67.86 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=33.1
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE-EECC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI-AIDG 305 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i-~~~g 305 (489)
...+|..++|+|++||||||+.+.|++.+.+..|.+ .+++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345789999999999999999999999887776765 3443
No 242
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.16 E-value=0.00038 Score=61.38 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
-+++|+|++|+|||||++.++|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 3689999999999999999998643
No 243
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.12 E-value=0.0001 Score=67.66 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=27.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGI 306 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~ 306 (489)
..+++|+|++||||||+.+.|++.+ |...+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence 5689999999999999999998865 44556553
No 244
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.12 E-value=0.00022 Score=72.58 Aligned_cols=41 Identities=29% Similarity=0.479 Sum_probs=34.2
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCceEEECCE
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRI-----------VEPTAGLIAIDGI 306 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~-----------~~~~~G~i~~~g~ 306 (489)
.+..|.+++|||++|+|||||++.|+|. .+|..|.+.+++.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567899999999999999999999998 6788888887663
No 245
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.08 E-value=0.00028 Score=63.22 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
-+++++|++|+|||||++.+++-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
No 246
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.01 E-value=0.00035 Score=62.79 Aligned_cols=25 Identities=52% Similarity=0.732 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~~~ 296 (489)
+++|+|++|+|||||++.+++...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999997544
No 247
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.01 E-value=0.00037 Score=64.33 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=23.6
Q ss_pred eeeEEeeCCCEEEEECCCCCcHHHHHHHHh
Q 011281 262 GLTCTFLGGMKTGIVGRTGSGKSTLIQTLF 291 (489)
Q Consensus 262 ~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~ 291 (489)
+.++++.+ ...+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 44555555 489999999999999999885
No 248
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.00 E-value=0.00063 Score=67.23 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=24.6
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhc
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
-+++|+.+.|.||+|||||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988775
No 249
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.00 E-value=0.00017 Score=68.96 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=32.9
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDI 308 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~ 308 (489)
..+++..+.|+|++||||||+.+.|++.+. .|.+.+|+-.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 455678999999999999999999998775 25677777443
No 250
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.00 E-value=0.00032 Score=64.23 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 011281 272 KTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g 292 (489)
+++|+|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 251
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.99 E-value=6.1e-05 Score=76.08 Aligned_cols=56 Identities=32% Similarity=0.379 Sum_probs=35.4
Q ss_pred ccEEEEEEEEEECCCCCcceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 011281 241 GEVDIHGLQVRYAPHLPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 304 (489)
Q Consensus 241 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~ 304 (489)
+.+.++|++..|... .++++++|+| +|+|++|+|||||++.|++...+..|.+..+
T Consensus 16 ~~v~~~~l~~~~~~k--~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~ 71 (361)
T 2qag_A 16 GYVGFANLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGA 71 (361)
T ss_dssp -----CCHHHHHHTH--HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC---------
T ss_pred ceEEeccchHHhCCe--eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCC
Confidence 357888888777542 4788888876 9999999999999999998766555554433
No 252
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.96 E-value=0.00024 Score=64.01 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=29.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCEe
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIVEPT---AGLIAIDGID 307 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~~~~---~G~i~~~g~~ 307 (489)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 4689999999999999999999876543 3667776644
No 253
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.90 E-value=0.00038 Score=70.88 Aligned_cols=58 Identities=26% Similarity=0.382 Sum_probs=43.2
Q ss_pred cCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhcC-CceEEEEecCchhhh-------------hcCEEEEEeCC
Q 011281 396 KKSKVLVLDEATASVD---TATDNLIQHTLGQHFS-DCTVITIAHRITSVI-------------DSDMVLLLSYG 453 (489)
Q Consensus 396 ~~~~illlDEpts~lD---~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~-------------~~d~i~~l~~G 453 (489)
..|.++++||+-.-++ +...+.+.+.++..++ +..++++||+++.+. .|+-.+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3578999999998885 5666777777776554 789999999998653 36666676554
No 254
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.87 E-value=0.00056 Score=61.00 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
.|..+.|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998664
No 255
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.85 E-value=1.5e-05 Score=80.66 Aligned_cols=85 Identities=9% Similarity=0.001 Sum_probs=60.4
Q ss_pred CCchHHHHHHHHHHhc-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHhcC--CceEEEEecCchhhhhcCEE
Q 011281 380 WSMGQRQLVCLARVLL-KKSKVLVLDE---AT------ASVDTATDNLIQHTLGQHFS--DCTVITIAHRITSVIDSDMV 447 (489)
Q Consensus 380 LSgGq~Qrl~laRall-~~~~illlDE---pt------s~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i 447 (489)
+|+|++||..+++++. .+|++++||| |+ +++|+.....+.+.+.+..+ +.++++++|--..-+.+|++
T Consensus 259 ~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i 338 (365)
T 1lw7_A 259 IQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVK 338 (365)
T ss_dssp HHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 4667788888888875 5999999999 65 58999999999999876543 78999999864444447777
Q ss_pred EEEeCCEEEEecChhHHhh
Q 011281 448 LLLSYGLIEEFDSPTRLLE 466 (489)
Q Consensus 448 ~~l~~G~i~~~g~~~el~~ 466 (489)
.++++ +++.|+.+||.+
T Consensus 339 ~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 339 AVIEK--VLNEEEISELQN 355 (365)
T ss_dssp HHHHH--HTSCCCCSSCCC
T ss_pred HHHHH--HhcccchhHhhc
Confidence 77765 556677777654
No 256
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.85 E-value=0.00046 Score=62.07 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999854
No 257
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.80 E-value=0.00021 Score=71.42 Aligned_cols=36 Identities=36% Similarity=0.506 Sum_probs=32.9
Q ss_pred ceeeeeEEeeCCCE--EEEECCCCCcHHHHHHHHhcCC
Q 011281 259 VLRGLTCTFLGGMK--TGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 259 ~l~~i~l~i~~g~~--~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 67888899999999 9999999999999999999854
No 258
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.0022 Score=58.41 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=30.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchh
Q 011281 396 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITS 440 (489)
Q Consensus 396 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 440 (489)
.++.++++||. ..+++.....+.+.+.....+..+|++|.+...
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 36789999996 446777777777777664445566777766543
No 259
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.76 E-value=0.0012 Score=59.26 Aligned_cols=35 Identities=43% Similarity=0.705 Sum_probs=26.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc-C----CCCCCc----eEEECCE
Q 011281 272 KTGIVGRTGSGKSTLIQTLFR-I----VEPTAG----LIAIDGI 306 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g-~----~~~~~G----~i~~~g~ 306 (489)
+++|+|++|+|||||++.+++ . +.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 689999999999999975554 3 566666 4555554
No 260
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.75 E-value=0.0039 Score=64.55 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=79.3
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-eEEECCEeCCCCChHHhhccceEEcCCCccCccchhhh
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAG-LIAIDGIDISSIGLHDLRSRLSIIPQDPTMFEGSVHNN 337 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~~N 337 (489)
.|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....| .+.+- +. +.+.+.+...+- .+...+-...++.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~--sl-E~~~~~l~~R~~--~~~~~i~~~~l~~- 262 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY--SL-EMPAAQLTLRMM--CSEARIDMNRVRL- 262 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE--ES-SSCHHHHHHHHH--HHHTTCCTTTCCG-
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE--EC-CCCHHHHHHHHH--HHHcCCCHHHHhC-
Confidence 45555545889999999999999999999888765433222 33331 11 234444443311 0000000001111
Q ss_pred cCCCCCCcHHHHHHHHHHcCCcHHHHhccccccchhhcCCCCCCchHHHHHHHHHHhc--cCCCEEEEeCCCCCCCH---
Q 011281 338 LDPLEEYADEEIWEALDKCQLGNEVRKNEGKLESRVTENGENWSMGQRQLVCLARVLL--KKSKVLVLDEATASVDT--- 412 (489)
Q Consensus 338 i~~~~~~~~~~~~~~~~~~~l~~~i~~l~~gldt~vge~G~~LSgGq~Qrl~laRall--~~~~illlDEpts~lD~--- 412 (489)
...++++..+..+.+ +.+...|- .+.+ ...+|..+ ..+.+|.+. ++++++++|..+.-.++
T Consensus 263 ----g~l~~~~~~~~~~a~---~~l~~~~l----~i~d-~~~~s~~~--l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~ 328 (444)
T 2q6t_A 263 ----GQLTDRDFSRLVDVA---SRLSEAPI----YIDD-TPDLTLME--VRARARRLVSQNQVGLIIIDYLQLMSGPGSG 328 (444)
T ss_dssp ----GGCCHHHHHHHHHHH---HHHHTSCE----EEEC-CTTCBHHH--HHHHHHHHHHHSCCCEEEEECGGGCBCC---
T ss_pred ----CCCCHHHHHHHHHHH---HHHhcCCE----EEEC-CCCCCHHH--HHHHHHHHHHHcCCCEEEEcChhhcCCCcCC
Confidence 123444433333221 11222111 1111 12345544 355666665 47899999998865432
Q ss_pred ---HH-H---HHHHHHHHHhcCCceEEEE
Q 011281 413 ---AT-D---NLIQHTLGQHFSDCTVITI 434 (489)
Q Consensus 413 ---~~-~---~~i~~~l~~~~~~~t~i~i 434 (489)
.. . ..+...|+.+.++.-+-+|
T Consensus 329 ~~~~~r~~~i~~i~~~Lk~lAke~~v~vi 357 (444)
T 2q6t_A 329 KSGENRQQEIAAISRGLKALARELGIPII 357 (444)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 11 1 2455556666666677788
No 261
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.75 E-value=0.0046 Score=62.29 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=24.0
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhc
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
-+++|+.+.|.||+|+|||||+..++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 368999999999999999999977764
No 262
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.74 E-value=0.011 Score=57.29 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+..+.|.||+|+||||+++.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999888765
No 263
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.74 E-value=0.00055 Score=69.29 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=42.5
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchhhhhcCEEE
Q 011281 387 LVCLARVLLKKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITSVIDSDMVL 448 (489)
Q Consensus 387 rl~laRall~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~ 448 (489)
+.+|+++|..+|+++++|||| |+++.. ..++....|.+++.++|..+....+||++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHHH
Confidence 469999999999999999999 776543 33444445889999999876544466653
No 264
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.74 E-value=0.0032 Score=63.18 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
++...+.|.||+|+||||+++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998754
No 265
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.72 E-value=0.00066 Score=61.79 Aligned_cols=31 Identities=39% Similarity=0.473 Sum_probs=26.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 305 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 305 (489)
..+++|+|++||||||+.+.|+.. |...+|.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 457999999999999999999985 6666654
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.72 E-value=0.00077 Score=59.49 Aligned_cols=24 Identities=21% Similarity=0.051 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
..++|+|++||||||+.+.|+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998754
No 267
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.71 E-value=0.0065 Score=57.45 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
....+.|.||+|+||||+++.++..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999998754
No 268
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.71 E-value=0.00066 Score=61.73 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.68 E-value=0.0073 Score=62.18 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=27.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAI 303 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~ 303 (489)
++.+++++|++||||||++..|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 35789999999999999999999877654444443
No 270
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.68 E-value=0.00091 Score=60.09 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998744
No 271
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.64 E-value=0.0034 Score=62.72 Aligned_cols=38 Identities=26% Similarity=0.514 Sum_probs=29.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 305 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 305 (489)
.+|..+.|.||+|+||||+++.++.........+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 35678999999999999999999987654333444443
No 272
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.64 E-value=0.00079 Score=67.49 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
..+..+.|.||+|+||||+++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999987653
No 273
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.62 E-value=0.001 Score=59.65 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 274
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.61 E-value=0.0025 Score=59.61 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=33.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecC-----------chhhhhcCEEEEE
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHR-----------ITSVIDSDMVLLL 450 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~-----------~~~~~~~d~i~~l 450 (489)
+++++++||.-- ++.+.-+.+ ..+.+ .+.+||++-|+ .+.+..||.|.-|
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 589999999964 765533333 33433 37899999993 2334458999875
No 275
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.59 E-value=0.001 Score=62.62 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.7
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhcC
Q 011281 267 FLGGMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 267 i~~g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
-++|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999999863
No 276
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.57 E-value=0.001 Score=64.80 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=28.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDG 305 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g 305 (489)
.|..+.|+|||||||||+.+.|+.-++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999987553 35566665
No 277
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.56 E-value=0.00026 Score=65.18 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIVEPT 297 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~~~~ 297 (489)
+++|+|++||||||+++.|.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887643
No 278
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.55 E-value=0.00099 Score=60.04 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++..+.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998644
No 279
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.55 E-value=0.00087 Score=60.99 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 011281 273 TGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 273 ~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+.|+||||||||||++.|+.-+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987543
No 280
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.55 E-value=0.00081 Score=60.24 Aligned_cols=27 Identities=26% Similarity=0.192 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.++..+.|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998543
No 281
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.55 E-value=0.0011 Score=59.27 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
.-+++++|++|+|||||++.+.+-
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999985
No 282
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.55 E-value=0.0013 Score=59.94 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+|.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999877
No 283
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.54 E-value=0.0012 Score=58.16 Aligned_cols=19 Identities=42% Similarity=0.499 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 011281 272 KTGIVGRTGSGKSTLIQTL 290 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l 290 (489)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 284
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.51 E-value=0.0031 Score=62.11 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=25.0
Q ss_pred EEeeCCCEEEEECCCCCcHHHHHHHHhc
Q 011281 265 CTFLGGMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 265 l~i~~g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
--+++|..+.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999999999875
No 285
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.49 E-value=0.011 Score=58.30 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.+..-+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 355779999999999999999999865
No 286
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.47 E-value=0.0025 Score=64.35 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=26.2
Q ss_pred eeeeeEEeeCCCEEEEECCCCCcHHHHHHHHh
Q 011281 260 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF 291 (489)
Q Consensus 260 l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~ 291 (489)
+++..+++.+ ...+|+|||||||||++.+|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4667777766 589999999999999999986
No 287
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.45 E-value=0.012 Score=69.69 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=28.9
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE
Q 011281 267 FLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLI 301 (489)
Q Consensus 267 i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i 301 (489)
+++|+.+.|.||+|+|||||+..++.......|.+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V 763 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 763 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 89999999999999999999999887554443444
No 288
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.44 E-value=0.0014 Score=60.63 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
++-+++|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999998
No 289
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.40 E-value=0.0024 Score=64.20 Aligned_cols=36 Identities=42% Similarity=0.765 Sum_probs=30.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc-----------CCCCCCceEEECC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFR-----------IVEPTAGLIAIDG 305 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g-----------~~~~~~G~i~~~g 305 (489)
|-+++|||++|+|||||++.|++ -..|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56799999999999999999998 3467888887766
No 290
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.37 E-value=0.0016 Score=58.77 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
No 291
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.37 E-value=0.013 Score=60.14 Aligned_cols=29 Identities=31% Similarity=0.217 Sum_probs=24.8
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.-++...+.++|++||||||+.+.|+.-+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34567899999999999999999998743
No 292
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.34 E-value=0.0018 Score=59.39 Aligned_cols=28 Identities=25% Similarity=0.219 Sum_probs=24.2
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 267 FLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 267 i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.++|.+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999998643
No 293
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.34 E-value=0.0018 Score=59.27 Aligned_cols=27 Identities=30% Similarity=0.204 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
++|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
No 294
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.33 E-value=0.0055 Score=63.43 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=26.5
Q ss_pred eeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhc
Q 011281 260 LRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 260 l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
|+.+.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 444433578999999999999999999876664
No 295
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.32 E-value=0.0014 Score=64.42 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=29.4
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhc
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
.+++..+.+ .|.-++|+|+||+||||+...+.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 577777777 789999999999999999998887
No 296
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.31 E-value=0.0079 Score=51.78 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+.+..+.|.||+|+|||++++.+....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 345679999999999999999998754
No 297
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.31 E-value=0.002 Score=58.90 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 296 (489)
+|.+++|.|++||||||+.+.|+.-+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999886654
No 298
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.30 E-value=0.0017 Score=57.77 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998754
No 299
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.29 E-value=0.002 Score=57.14 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g 292 (489)
..+.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 300
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.29 E-value=0.0017 Score=62.01 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
..++|+||+|||||||.+.|++-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
No 301
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.25 E-value=0.00087 Score=60.75 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=25.0
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+.+++.+++|+|++||||||+.+.|+..+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999998754
No 302
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.17 E-value=0.0025 Score=57.28 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+..++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999997643
No 303
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.13 E-value=0.011 Score=59.04 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=30.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchh
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITS 440 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 440 (489)
++.++++||+- .++......+.+.+.+...+..+|++|++...
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 56899999964 46777777777777654345567777876653
No 304
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.13 E-value=0.002 Score=57.55 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=18.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.++..+.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357889999999999999999998644
No 305
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.12 E-value=0.0025 Score=57.15 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
+++|.|++||||||+.+.|+.-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988653
No 306
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.07 E-value=0.0078 Score=52.87 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+.-+++++|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999874
No 307
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.06 E-value=0.0057 Score=53.20 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 011281 272 KTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g 292 (489)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 308
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.05 E-value=0.0032 Score=57.16 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+++.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999764
No 309
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.03 E-value=0.0036 Score=57.93 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
++|-++.|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998754
No 310
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.98 E-value=0.002 Score=57.55 Aligned_cols=26 Identities=27% Similarity=0.274 Sum_probs=22.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~~~ 296 (489)
..++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47999999999999999999987653
No 311
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.015 Score=59.78 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=25.4
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
-+++..-+.+.||+|||||+|++++++..
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 46677789999999999999999999864
No 312
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.97 E-value=0.0035 Score=56.52 Aligned_cols=23 Identities=43% Similarity=0.431 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 313
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.95 E-value=0.0042 Score=56.56 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.+-+++|+|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998744
No 314
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.95 E-value=0.0036 Score=58.31 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=22.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.++.+++|+|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
No 315
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.95 E-value=0.0036 Score=57.61 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++|.||+||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999996644
No 316
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.94 E-value=0.0035 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 317
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.91 E-value=0.0036 Score=54.36 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 318
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.90 E-value=0.0036 Score=57.03 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998854
No 319
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.90 E-value=0.0043 Score=54.66 Aligned_cols=24 Identities=38% Similarity=0.336 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
-+.++|.|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999764
No 320
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.89 E-value=0.0035 Score=60.17 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++++|++|||||||++.++|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 321
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.88 E-value=0.004 Score=54.95 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
No 322
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.88 E-value=0.0033 Score=56.35 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+.+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998643
No 323
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.88 E-value=0.0037 Score=55.97 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
No 324
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.87 E-value=0.0045 Score=54.24 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998753
No 325
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.0039 Score=55.89 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.=+++++|++|||||||++.+++-.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999999864
No 326
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.85 E-value=0.0037 Score=57.98 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.+..+.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 327
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.85 E-value=0.035 Score=54.62 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
..+.|.||+|+||||+++.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468999999999999999998764
No 328
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.85 E-value=0.006 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 329
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.84 E-value=0.0046 Score=53.88 Aligned_cols=23 Identities=43% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++++|++|+|||||++.+++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998753
No 330
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.84 E-value=0.0043 Score=57.16 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++|+||+||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997654
No 331
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.84 E-value=0.015 Score=64.36 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.+.++||+|+|||++++.++..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 332
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.83 E-value=0.0042 Score=56.54 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
...+++|+|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998654
No 333
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.83 E-value=0.0046 Score=54.31 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998743
No 334
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.82 E-value=0.0043 Score=53.64 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998853
No 335
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.80 E-value=0.0044 Score=53.46 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 336
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.021 Score=58.60 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=24.7
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
-+++..-+.+.||+|||||+|++++++..
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35566679999999999999999999854
No 337
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.78 E-value=0.0047 Score=55.43 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 338
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.78 E-value=0.005 Score=54.16 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 339
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.77 E-value=0.0041 Score=53.65 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 340
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.75 E-value=0.0047 Score=53.48 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 341
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.74 E-value=0.035 Score=66.76 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=25.1
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 267 FLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 267 i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++|+.+.|.||+|+|||||+..++.-.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999988876644
No 342
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.74 E-value=0.0056 Score=60.72 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
++..+.|+||+|||||||...|+.-++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 567899999999999999999998764
No 343
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.74 E-value=0.012 Score=57.74 Aligned_cols=44 Identities=23% Similarity=0.439 Sum_probs=31.0
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHhcCCceEEEEecCchhh
Q 011281 397 KSKVLVLDEATASVD-TATDNLIQHTLGQHFSDCTVITIAHRITSV 441 (489)
Q Consensus 397 ~~~illlDEpts~lD-~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 441 (489)
+++++++||+-. +. .+....+.+.+.....+..+|++|++...+
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGS
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 789999999843 44 556666777776654566788888876643
No 344
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.72 E-value=0.0049 Score=53.68 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 345
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.72 E-value=0.0052 Score=56.05 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
..++|+|++||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 346
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.70 E-value=0.005 Score=53.48 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 347
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.70 E-value=0.005 Score=54.21 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|||||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998864
No 348
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.02 Score=58.82 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=25.5
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
-+++..-+.+.||+|||||+|++++++..
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 46667789999999999999999999854
No 349
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.70 E-value=0.0045 Score=53.84 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 350
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.69 E-value=0.0068 Score=54.35 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 351
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.68 E-value=0.0098 Score=54.25 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 352
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.68 E-value=0.0052 Score=53.99 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 353
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.65 E-value=0.005 Score=55.22 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
--+++++|++|+|||||++.+++-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
No 354
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.64 E-value=0.0057 Score=57.79 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
++-+++|.||+||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998644
No 355
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.63 E-value=0.0052 Score=59.09 Aligned_cols=22 Identities=50% Similarity=0.723 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
.++++|++|+|||||++.|++-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998874
No 356
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.63 E-value=0.0059 Score=58.30 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
++..+.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 357
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.62 E-value=0.0076 Score=52.20 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 358
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.62 E-value=0.0052 Score=54.87 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
-+++++|++|||||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998854
No 359
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.62 E-value=0.0057 Score=58.01 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
No 360
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.61 E-value=0.0029 Score=61.72 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
++-+++|.||+||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998744
No 361
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.60 E-value=0.0052 Score=54.07 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 362
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.60 E-value=0.0061 Score=58.79 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++++|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
No 363
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.60 E-value=0.006 Score=54.53 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~~~ 296 (489)
+++++|++|+|||||++.+.|-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987643
No 364
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.57 E-value=0.006 Score=52.97 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 011281 272 KTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g 292 (489)
+++++|++|+|||||++.+++
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 365
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.54 E-value=0.0062 Score=54.57 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999985
No 366
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.53 E-value=0.0059 Score=54.31 Aligned_cols=23 Identities=39% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998853
No 367
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.53 E-value=0.041 Score=56.76 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.+..-+.|.||+|+|||||++.++...
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999865
No 368
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.52 E-value=0.0064 Score=53.96 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 369
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.51 E-value=0.0072 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 370
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.50 E-value=0.0081 Score=53.49 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 371
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.49 E-value=0.0067 Score=52.55 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 011281 272 KTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g 292 (489)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 372
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.49 E-value=0.0065 Score=54.05 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 373
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.47 E-value=0.0068 Score=52.82 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
.=+++++|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999975
No 374
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.43 E-value=0.0054 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
+.=+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999874
No 375
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.41 E-value=0.0068 Score=58.67 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
..+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 376
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.41 E-value=0.0066 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 377
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.39 E-value=0.0074 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 378
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.37 E-value=0.0076 Score=52.84 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 379
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.36 E-value=0.0076 Score=53.80 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 380
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.36 E-value=0.014 Score=51.58 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 011281 272 KTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g 292 (489)
+++++|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999983
No 381
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.036 Score=56.23 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=23.9
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 267 FLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 267 i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++..-+.+.||+|||||+|++++++..
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 4555669999999999999999999854
No 382
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.35 E-value=0.0079 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+++-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 383
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.34 E-value=0.0079 Score=55.58 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+|-.+.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998754
No 384
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.33 E-value=0.0079 Score=53.16 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+++-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6899999999999999999863
No 385
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.31 E-value=0.009 Score=58.61 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
+..++|+||||||||||...|+.-++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999998653
No 386
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.30 E-value=0.011 Score=54.00 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=28.2
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.++..-+.+ .|..+.|+||||||||||...|+.-.
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 466655554 57889999999999999999988753
No 387
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.28 E-value=0.0096 Score=52.93 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+.=+++++|++|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999874
No 388
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.28 E-value=0.0088 Score=58.53 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++|+|++|+|||||++.++|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999985
No 389
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.27 E-value=0.02 Score=64.10 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=23.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~~~ 296 (489)
..+.|+||+|+|||++++.|+..+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47899999999999999999987654
No 390
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.27 E-value=0.0083 Score=57.25 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++++|++|||||||++.++|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999863
No 391
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.26 E-value=0.011 Score=52.37 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
..+..+.|+||+|+||||+++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345779999999999999999998864
No 392
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.24 E-value=0.0094 Score=55.39 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998644
No 393
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.24 E-value=0.00092 Score=74.51 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=36.4
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEeCC
Q 011281 263 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAIDGIDIS 309 (489)
Q Consensus 263 i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~g~~~~ 309 (489)
.++.+.+++.+.++||+|||||||++++++... .+-+.+++.++.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 548 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 548 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSST
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhh
Confidence 466788999999999999999999999999874 345666665543
No 394
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.043 Score=56.04 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=25.0
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
-+++..-+.+.||+|+|||+|++++++..
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 35566779999999999999999999864
No 395
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.24 E-value=0.0087 Score=56.79 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
-+++|+|++|||||||++.|+|-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999974
No 396
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.23 E-value=0.008 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 397
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.23 E-value=0.069 Score=63.42 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=24.2
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhcC
Q 011281 267 FLGGMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 267 i~~g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++|+.+.|.||+|+|||||+..++.-
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 889999999999999999998777653
No 398
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.23 E-value=0.0086 Score=55.11 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998744
No 399
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.22 E-value=0.021 Score=55.50 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=28.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCchh
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRITS 440 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 440 (489)
++.++++||+- .++......+.+.+.....+..+|++|++...
T Consensus 107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~ 149 (323)
T 1sxj_B 107 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNK 149 (323)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEECcc-cCCHHHHHHHHHHHhccCCCceEEEEeCChhh
Confidence 47899999963 35566666677777654445567777776543
No 400
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.22 E-value=0.009 Score=53.40 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+++-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 401
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.19 E-value=0.007 Score=60.98 Aligned_cols=22 Identities=50% Similarity=0.667 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++|||++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 402
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.19 E-value=0.009 Score=54.72 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
-+++++|++|+|||||++.+++-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998854
No 403
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.19 E-value=0.01 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 404
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.18 E-value=0.0093 Score=53.93 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 405
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.17 E-value=0.011 Score=53.50 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 406
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.17 E-value=0.0097 Score=59.14 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
..++|+||||||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998664
No 407
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.16 E-value=0.0059 Score=56.16 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.-+++++|++|+|||||++.+++-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999999853
No 408
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.16 E-value=0.0088 Score=53.73 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 409
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.15 E-value=0.0095 Score=53.75 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 410
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.14 E-value=0.011 Score=54.91 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
-+++++|++|+|||||++.+++-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 411
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.13 E-value=0.01 Score=53.06 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 412
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.12 E-value=0.01 Score=58.12 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
-+++|+|++|+|||||++.+.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57899999999999999999985
No 413
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.11 E-value=0.013 Score=51.79 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999853
No 414
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.11 E-value=0.01 Score=52.47 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 011281 272 KTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g 292 (489)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 415
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.11 E-value=0.012 Score=54.91 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.+..+.|+|+.||||||+.+.|+.-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998755
No 416
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.10 E-value=0.01 Score=53.58 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
No 417
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.10 E-value=0.0082 Score=55.26 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998855
No 418
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.0094 Score=53.47 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g 292 (489)
=+++++|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3689999999999999999987
No 419
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.09 E-value=0.012 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
-+++++|++|+|||||++.+++-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999873
No 420
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.09 E-value=0.013 Score=52.32 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 421
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.09 E-value=0.0095 Score=53.28 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
=+++++|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 422
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.06 E-value=0.012 Score=51.80 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
.=+++++|++|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999863
No 423
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.05 E-value=0.016 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 424
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.05 E-value=0.0097 Score=53.88 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
=+++++|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 47899999999999999999874
No 425
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.04 E-value=0.011 Score=53.00 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 426
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.02 E-value=0.012 Score=52.97 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~~~ 296 (489)
=+++++|++|+|||||++.+.+-+.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 47999999999999999999885543
No 427
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.02 E-value=0.011 Score=56.92 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++++|++|||||||++.++|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999863
No 428
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.01 E-value=0.01 Score=53.21 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 6899999999999999999864
No 429
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.01 E-value=0.011 Score=53.44 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 430
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.00 E-value=0.012 Score=56.07 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++++|++|||||||++.++|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
No 431
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.00 E-value=0.01 Score=55.25 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=25.0
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 266 TFLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 266 ~i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+.++..++.|+||.||||+|..+.|+.-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567889999999999999999998765
No 432
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.98 E-value=0.012 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
.=+++++|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999985
No 433
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.93 E-value=0.012 Score=52.87 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=20.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
=+++++|++|+|||||++.+++-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 434
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.93 E-value=0.011 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
=+++++|++|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 435
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.92 E-value=0.012 Score=52.75 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 436
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.92 E-value=0.012 Score=53.10 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
.=+++++|++|+|||||++.+++-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999999864
No 437
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.92 E-value=0.012 Score=52.45 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 438
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.92 E-value=0.012 Score=52.57 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
=+++++|++|+|||||++.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999863
No 439
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.92 E-value=0.012 Score=53.44 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
.=+++++|++|+|||||++.+++-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347899999999999999999864
No 440
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.91 E-value=0.011 Score=55.48 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=22.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
.+|.++.+.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987653
No 441
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.91 E-value=0.014 Score=54.13 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=24.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 296 (489)
-+|.++.+.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999876643
No 442
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.88 E-value=0.014 Score=55.83 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=23.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCce
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGL 300 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~ 300 (489)
-+++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999976544443
No 443
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.88 E-value=0.015 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 444
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.87 E-value=0.011 Score=53.47 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 445
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.86 E-value=0.015 Score=52.46 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
.=+++++|++|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 446
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.86 E-value=0.01 Score=52.29 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
=+++++|++|+|||||++.+++-
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999863
No 447
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.86 E-value=0.012 Score=53.60 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
-+++++|++|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999874
No 448
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.84 E-value=0.013 Score=57.27 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.++|+|++|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 449
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.83 E-value=0.014 Score=53.59 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 011281 272 KTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g 292 (489)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 450
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.83 E-value=0.088 Score=51.96 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=28.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCch
Q 011281 397 KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT 439 (489)
Q Consensus 397 ~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 439 (489)
+.+|+|+||+= .|..+....+.+.+.+-.++..+|++|++.+
T Consensus 108 ~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 67899999973 4556666666666654323456777888865
No 451
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.82 E-value=0.014 Score=52.29 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 011281 272 KTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g 292 (489)
+++++|++|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999988875
No 452
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.82 E-value=0.014 Score=57.56 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=22.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.81 E-value=0.014 Score=56.55 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhc
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g 292 (489)
..+.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 454
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.78 E-value=0.014 Score=55.97 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++++|++|+|||||++.++|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 455
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.78 E-value=0.014 Score=52.51 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
+.=+++++|++|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445799999999999999999975
No 456
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.77 E-value=0.015 Score=54.71 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
+|.++++.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987654
No 457
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.77 E-value=0.014 Score=55.64 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.++|-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999984
No 458
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.77 E-value=0.013 Score=51.63 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
..+..+.|+||+|+||||+++.++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3466789999999999999999988654
No 459
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.75 E-value=0.013 Score=53.82 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
-.++++|++|||||||++.+++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998753
No 460
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.75 E-value=0.0099 Score=52.59 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=9.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 461
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.74 E-value=0.016 Score=56.78 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
...+.|+||||||||||...|+.-++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999997653
No 462
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.71 E-value=0.014 Score=54.18 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=26.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~~ 296 (489)
++|..+.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987765
No 463
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.71 E-value=0.019 Score=52.26 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
-+++++|++|+|||||++.+++-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998643
No 464
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.67 E-value=0.014 Score=56.39 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
=+++|+|++|+|||||++.|+|.-
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 369999999999999999999864
No 465
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.67 E-value=0.051 Score=56.53 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=53.9
Q ss_pred chhhcCCCCCCchHHHHHHHH--HHhcc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEE
Q 011281 371 SRVTENGENWSMGQRQLVCLA--RVLLK---------------KSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVIT 433 (489)
Q Consensus 371 t~vge~G~~LSgGq~Qrl~la--Rall~---------------~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~ 433 (489)
+........+||||+|-.-+| -+++. .-.+++|||| +.+|.+..+..++.++++ |-=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 444545556899999954333 33221 1257999999 999999999999999875 566777
Q ss_pred EecCchhhhhcCEEEEEe
Q 011281 434 IAHRITSVIDSDMVLLLS 451 (489)
Q Consensus 434 itH~~~~~~~~d~i~~l~ 451 (489)
+|=. .....+|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 7766 3344588888764
No 466
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.65 E-value=0.018 Score=53.38 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
+|.++.+-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
No 467
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.64 E-value=0.016 Score=60.05 Aligned_cols=36 Identities=36% Similarity=0.618 Sum_probs=29.8
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
+++.+ +.+-+|++.+|+||+|+|||||++.|++-..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 45444 6778999999999999999999999987543
No 468
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.63 E-value=0.014 Score=52.77 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 469
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.019 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999874
No 470
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.58 E-value=0.017 Score=54.22 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
+|..++|.|+.||||||+++.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998663
No 471
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.57 E-value=0.019 Score=53.65 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=24.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
.+|.++++.|++||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987553
No 472
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.57 E-value=0.013 Score=55.95 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 268 LGGMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 268 ~~g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
+++.+++|.|+.||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999998763
No 473
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.54 E-value=0.0097 Score=54.50 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+++-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998853
No 474
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.51 E-value=0.016 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 475
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.49 E-value=0.014 Score=52.06 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
+.=+++++|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999999964
No 476
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.44 E-value=0.028 Score=50.20 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=25.2
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCcHHHHHHHHhc
Q 011281 259 VLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 259 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
.++..-+. -.|.-+.|.|+||+||||+...+..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34444443 3588899999999999999987765
No 477
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.41 E-value=0.026 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=22.2
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHh
Q 011281 267 FLGGMKTGIVGRTGSGKSTLIQTLF 291 (489)
Q Consensus 267 i~~g~~~~ivG~sGsGKSTl~~~l~ 291 (489)
+++|+.+.|.|++|+|||||+.-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999986543
No 478
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.35 E-value=0.0065 Score=57.89 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=23.1
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhcC
Q 011281 263 LTCTFLGGMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 263 i~l~i~~g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+....++| +.|.||+|+||||+++.+++.
T Consensus 39 ~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 39 LGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 33344444 889999999999999999984
No 479
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.33 E-value=0.022 Score=55.68 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
++-+++++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 35689999999999999999988764
No 480
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.28 E-value=0.019 Score=52.88 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
-+++|+|++|+|||||++-+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999888653
No 481
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.22 E-value=0.02 Score=51.83 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999999763
No 482
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.19 E-value=0.022 Score=57.84 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
..++|+||||||||||...|+.-++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999987653
No 483
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.18 E-value=0.21 Score=60.16 Aligned_cols=35 Identities=29% Similarity=0.228 Sum_probs=30.2
Q ss_pred cceeeee--EEeeCCCEEEEECCCCCcHHHHHHHHhc
Q 011281 258 LVLRGLT--CTFLGGMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 258 ~~l~~i~--l~i~~g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
+.|+++. .-+++|+.+.++||+|||||||...++-
T Consensus 1067 ~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1067 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3577776 5799999999999999999999988763
No 484
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.17 E-value=0.011 Score=53.36 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=4.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
=+++++|++|+|||||++.+++-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999988764
No 485
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.15 E-value=0.021 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFR 292 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g 292 (489)
.=+++++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 35789999999999999988874
No 486
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.024 Score=52.28 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
+++++|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 487
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.10 E-value=0.024 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
=+++++|++|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999998764
No 488
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.92 E-value=0.03 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
++.|.||.||||+|..+.|+.-|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998653
No 489
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.87 E-value=0.0075 Score=62.11 Aligned_cols=34 Identities=29% Similarity=0.241 Sum_probs=27.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRIVEPTAGLIAID 304 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~~~~~~G~i~~~ 304 (489)
..++++|++|+||||++..|++.+.....+|.+-
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 6899999999999999999999876444455543
No 490
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.79 E-value=0.027 Score=51.19 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 011281 271 MKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 271 ~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
=+++++|++|+|||||++.+.+-
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999853
No 491
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.71 E-value=0.038 Score=53.41 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIVEP 296 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~~~ 296 (489)
+-.++++|.+|+|||||++.|.|-...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCcee
Confidence 347899999999999999999986543
No 492
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.57 E-value=0.024 Score=52.15 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=24.4
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 267 FLGGMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 267 i~~g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+++...+.+.||.|+||||++..|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 5566679999999999999999998864
No 493
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.53 E-value=8.9 Score=40.61 Aligned_cols=12 Identities=17% Similarity=0.373 Sum_probs=8.6
Q ss_pred EEEEEEEEECCC
Q 011281 244 DIHGLQVRYAPH 255 (489)
Q Consensus 244 ~~~~v~~~y~~~ 255 (489)
.++|++|+.+++
T Consensus 358 ~l~~isl~i~~G 369 (587)
T 3qf4_A 358 VLSGVNFSVKPG 369 (587)
T ss_dssp SEEEEEEEECTT
T ss_pred ceeceEEEEcCC
Confidence 478888887654
No 494
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.52 E-value=0.033 Score=56.06 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Q 011281 269 GGMKTGIVGRTGSGKSTLIQTLFRI 293 (489)
Q Consensus 269 ~g~~~~ivG~sGsGKSTl~~~l~g~ 293 (489)
++..++++|++|+|||||++.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5778999999999999999999986
No 495
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.37 E-value=9.3 Score=40.35 Aligned_cols=12 Identities=0% Similarity=0.061 Sum_probs=8.0
Q ss_pred EEEEEEEEECCC
Q 011281 244 DIHGLQVRYAPH 255 (489)
Q Consensus 244 ~~~~v~~~y~~~ 255 (489)
.++|++++.+++
T Consensus 356 ~l~~isl~i~~G 367 (578)
T 4a82_A 356 ILKDINLSIEKG 367 (578)
T ss_dssp SEEEEEEEECTT
T ss_pred ceeeeEEEECCC
Confidence 467777777644
No 496
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.33 E-value=0.029 Score=50.61 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=33.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEecCch-----------hhhhcCEEEEEeC
Q 011281 396 KKSKVLVLDEATASVDTATDNLIQHTLGQHFSDCTVITIAHRIT-----------SVIDSDMVLLLSY 452 (489)
Q Consensus 396 ~~~~illlDEpts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~-----------~~~~~d~i~~l~~ 452 (489)
.+++++++||.-- +|++..+.+.... + .+..+|+..++.. .+..||.|.-|+.
T Consensus 75 ~~~dvviIDE~Q~-~~~~~~~~l~~l~-~--~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPSLFEVVKDLL-D--RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TTEEEEEECCGGG-SCTTHHHHHHHHH-H--TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCCEEEEECccc-CCHHHHHHHHHHH-H--CCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 3678999999864 6655333332222 2 3778888888544 4455999987753
No 497
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.28 E-value=0.025 Score=51.97 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHH-Hhc
Q 011281 272 KTGIVGRTGSGKSTLIQT-LFR 292 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~-l~g 292 (489)
+++++|++|+|||||++. +.|
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 589999999999999998 444
No 498
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.24 E-value=0.047 Score=50.16 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIVE 295 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~~ 295 (489)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999987664
No 499
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.23 E-value=0.032 Score=55.68 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 011281 272 KTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 272 ~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
.+++||++|+|||||++.|+|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 500
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.20 E-value=0.043 Score=54.78 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 011281 270 GMKTGIVGRTGSGKSTLIQTLFRIV 294 (489)
Q Consensus 270 g~~~~ivG~sGsGKSTl~~~l~g~~ 294 (489)
+..+.+.||+|+||||+.+.|+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4568899999999999999999876
Done!