Query 011282
Match_columns 489
No_of_seqs 311 out of 1672
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 23:37:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 99.9 3.5E-27 7.6E-32 222.9 13.6 119 366-489 86-205 (205)
2 PF03066 Nucleoplasmin: Nucleo 99.9 1.5E-26 3.3E-31 212.0 12.6 98 2-100 5-111 (149)
3 KOG0544 FKBP-type peptidyl-pro 99.9 3.2E-25 6.9E-30 184.3 12.3 105 382-489 2-108 (108)
4 KOG0552 FKBP-type peptidyl-pro 99.9 1.1E-24 2.3E-29 210.4 13.2 111 376-489 115-226 (226)
5 PRK11570 peptidyl-prolyl cis-t 99.9 3.2E-23 6.9E-28 199.9 14.7 117 368-489 89-206 (206)
6 KOG0549 FKBP-type peptidyl-pro 99.9 4.4E-23 9.6E-28 191.4 13.6 110 379-489 66-176 (188)
7 TIGR03516 ppisom_GldI peptidyl 99.9 2.2E-22 4.7E-27 189.8 14.1 115 374-489 62-176 (177)
8 PRK10902 FKBP-type peptidyl-pr 99.8 9.5E-21 2.1E-25 189.3 14.8 116 368-489 133-249 (269)
9 PF00254 FKBP_C: FKBP-type pep 99.8 1.9E-18 4E-23 145.6 10.9 90 396-486 3-94 (94)
10 PRK15095 FKBP-type peptidyl-pr 99.6 7.2E-15 1.6E-19 136.2 9.6 72 396-468 3-75 (156)
11 KOG0543 FKBP-type peptidyl-pro 99.6 2.5E-14 5.5E-19 147.7 13.0 105 380-488 83-189 (397)
12 COG1047 SlpA FKBP-type peptidy 99.5 1.3E-13 2.9E-18 128.6 10.3 72 396-468 1-73 (174)
13 PRK10737 FKBP-type peptidyl-pr 99.5 1.2E-13 2.7E-18 132.0 9.7 72 396-468 1-72 (196)
14 KOG0543 FKBP-type peptidyl-pro 98.8 1.2E-08 2.6E-13 106.0 7.4 82 390-487 2-83 (397)
15 TIGR00115 tig trigger factor. 98.7 6.3E-08 1.4E-12 102.6 11.6 86 396-489 145-230 (408)
16 PRK01490 tig trigger factor; P 98.6 1.8E-07 3.9E-12 100.0 11.6 86 396-489 156-241 (435)
17 COG0544 Tig FKBP-type peptidyl 98.3 1.9E-06 4.1E-11 92.4 9.3 84 398-489 158-241 (441)
18 KOG0545 Aryl-hydrocarbon recep 97.0 0.00015 3.3E-09 71.7 -0.6 79 379-459 8-90 (329)
19 KOG0549 FKBP-type peptidyl-pro 96.7 0.00099 2.1E-08 63.0 2.7 41 430-470 1-41 (188)
20 PF04931 DNA_pol_phi: DNA poly 86.4 0.49 1.1E-05 54.8 3.0 8 199-206 722-729 (784)
21 PF10446 DUF2457: Protein of u 85.7 0.44 9.4E-06 51.0 1.9 8 426-433 387-394 (458)
22 PF06524 NOA36: NOA36 protein; 78.5 1.9 4.2E-05 43.2 3.2 8 63-70 212-219 (314)
23 PF10446 DUF2457: Protein of u 73.6 3.1 6.7E-05 44.7 3.4 6 437-442 391-396 (458)
24 PF02724 CDC45: CDC45-like pro 69.3 3.2 6.9E-05 47.0 2.5 18 76-93 74-92 (622)
25 PF06524 NOA36: NOA36 protein; 68.2 4.8 0.0001 40.5 3.2 6 89-94 232-237 (314)
26 KOG4264 Nucleo-cytoplasmic pro 59.7 8.2 0.00018 42.3 3.2 13 85-97 54-66 (694)
27 KOG3064 RNA-binding nuclear pr 59.0 6.4 0.00014 39.6 2.1 11 38-48 57-67 (303)
28 PF04147 Nop14: Nop14-like fam 50.9 12 0.00025 44.1 2.9 16 397-412 537-552 (840)
29 PF01346 FKBP_N: Domain amino 47.2 15 0.00034 32.1 2.5 20 368-387 105-124 (124)
30 KOG0943 Predicted ubiquitin-pr 44.7 15 0.00033 44.2 2.5 7 89-95 1707-1713(3015)
31 PF03115 Astro_capsid: Astrovi 40.9 15 0.00032 42.7 1.7 6 77-82 635-640 (787)
32 PRK00226 greA transcription el 38.4 80 0.0017 29.1 5.9 25 436-460 121-145 (157)
33 KOG1189 Global transcriptional 37.7 25 0.00055 40.4 2.8 8 68-75 835-842 (960)
34 KOG0526 Nucleosome-binding fac 37.2 1.3E+02 0.0029 33.5 8.0 32 52-83 375-411 (615)
35 PF02724 CDC45: CDC45-like pro 33.9 31 0.00067 39.2 2.8 13 379-391 496-508 (622)
36 TIGR01461 greB transcription e 32.3 1.3E+02 0.0028 28.0 6.2 24 437-460 119-142 (156)
37 KOG1999 RNA polymerase II tran 27.5 37 0.00081 40.0 2.1 9 398-406 408-416 (1024)
38 KOG3064 RNA-binding nuclear pr 26.2 40 0.00086 34.1 1.7 6 26-31 33-38 (303)
39 KOG2141 Protein involved in hi 24.3 86 0.0019 36.1 4.1 26 427-452 624-649 (822)
40 PRK01885 greB transcription el 24.0 1.9E+02 0.0041 26.9 5.8 25 437-461 121-145 (157)
41 KOG0526 Nucleosome-binding fac 23.5 96 0.0021 34.5 4.1 6 203-208 556-561 (615)
42 KOG2023 Nuclear transport rece 22.7 26 0.00057 39.9 -0.3 7 87-93 302-308 (885)
43 TIGR01462 greA transcription e 22.4 90 0.002 28.7 3.3 26 436-461 116-141 (151)
44 KOG0699 Serine/threonine prote 22.0 56 0.0012 34.8 1.9 6 142-147 310-315 (542)
45 PRK05892 nucleoside diphosphat 21.1 1.7E+02 0.0037 27.2 4.9 25 436-460 120-144 (158)
46 COG5406 Nucleosome binding fac 20.8 61 0.0013 36.8 2.0 71 106-177 927-999 (1001)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.5e-27 Score=222.89 Aligned_cols=119 Identities=50% Similarity=0.915 Sum_probs=112.4
Q ss_pred hhhhhhcCCCeEECCCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEccCCeEEecCCCC-CCeEEEeCCcccccchHHH
Q 011282 366 QVQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVG 444 (489)
Q Consensus 366 ~~~~~~k~~~~~~~~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~-~p~~f~lG~g~li~Gleea 444 (489)
....+++...+.++++||+|++++.| .|..|..++.|.+||+|++ .||++|||++.+ .|+.|.|| .+|+||.+|
T Consensus 86 f~~~~~k~~~v~~~~sgl~y~~~~~G--~G~~~~~~~~V~vhY~G~l-~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~eg 160 (205)
T COG0545 86 FLEKNAKEKGVKTLPSGLQYKVLKAG--DGAAPKKGDTVTVHYTGTL-IDGTVFDSSYDRGQPAEFPLG--GVIPGWDEG 160 (205)
T ss_pred HHhhhcccCCceECCCCcEEEEEecc--CCCCCCCCCEEEEEEEEec-CCCCccccccccCCCceeecC--CeeehHHHH
Confidence 34567778899999999999999999 7999999999999999999 899999999987 89999997 999999999
Q ss_pred hcCCccCcEEEEEECCCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011282 445 VNGMRVGDKRRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELIDVR 489 (489)
Q Consensus 445 L~gMkvGek~~v~IPp~laYG~~g~~~~IPpns~LvfeVeLl~Vr 489 (489)
|.+|++|++|+|+|||.+|||..|.++.||||++|+|+|+||+|+
T Consensus 161 l~~M~vG~k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 161 LQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred HhhCCCCceEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 999999999999999999999999777799999999999999985
No 2
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=99.94 E-value=1.5e-26 Score=211.97 Aligned_cols=98 Identities=22% Similarity=0.320 Sum_probs=79.2
Q ss_pred ceEEEEEcCCC-ceeeec-CCCCC--eEEEEEEEeCCCCCCCcEEEEEEeC----CCcceEEEeeCCCCccceeceeeeC
Q 011282 2 GFWGIEVKPGK-AHPYHS-DNVPG--KLHVTQATLGLGSSTEKSILQCSVG----DRSPIFLCSLLPNKNESCPLKLEFD 73 (489)
Q Consensus 2 ~FwG~eVkpgk-~~~~~~-~~~~~--~LhLsqa~Lg~~~~~e~~~v~~~v~----~~~~~~L~tL~~~~~eq~~LdL~F~ 73 (489)
+||||+|++++ .|+|.+ +++.. +|||+|||||+++++++++|++... ...+|+||||.+++++||+|+++|
T Consensus 5 ~~wGceL~~~k~~~~f~~~~~d~~~h~L~L~~v~Lga~AKdE~~vVe~e~~~~eg~~~kv~lAtLk~s~~~~vsL~~~~- 83 (149)
T PF03066_consen 5 YFWGCELKADKKDYTFKVDDNDENEHQLSLRQVCLGAGAKDELNVVEVEAMNYEGKPIKVPLATLKMSVQPMVSLDGFE- 83 (149)
T ss_dssp EEEEEEEBSTB-EEEE-TTSSSSSCEEEEEEEEEE-TTS-SSEEEEEEEEEBTTSCEEEEEEEEEBTTTBSEEEEEEEE-
T ss_pred EEEEEEEcCCCceEEEeCCCCCCcccEEEEEEeecCCCccCceeEEEEEeccCCCCeeEEEEEEecCCccceEEcCCcc-
Confidence 79999999997 899999 33323 9999999999999999999999872 235899999999999999999755
Q ss_pred CCCcEEEEE-ecCccEEEeeeeeecCCC
Q 011282 74 EDDVVVFSV-KGPQSIHLAGYFEAESGD 100 (489)
Q Consensus 74 ~~~~V~f~v-~G~~~VHlsGy~~~~~~~ 100 (489)
.+.+|+|+| .|+|||||||||++...+
T Consensus 84 ~~ppVtf~L~~GsGPVhisG~~~~~~~~ 111 (149)
T PF03066_consen 84 ITPPVTFRLKCGSGPVHISGQHLVAMEE 111 (149)
T ss_dssp ESSSEEEEEEESSS-EEEEEEEEEE---
T ss_pred cCCCEEEEEEecCCCEEeeCcccccccc
Confidence 455799997 799999999999877644
No 3
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.2e-25 Score=184.33 Aligned_cols=105 Identities=52% Similarity=0.940 Sum_probs=100.7
Q ss_pred ceEEEEEEcCCCCC-CCCCCCCeEEEEEEEEEccCCeEEecCCCC-CCeEEEeCCcccccchHHHhcCCccCcEEEEEEC
Q 011282 382 GLVIEEVAMGKPDG-KRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459 (489)
Q Consensus 382 Gl~~~il~~G~~~G-~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~-~p~~f~lG~g~li~GleeaL~gMkvGek~~v~IP 459 (489)
|+.+++|..| +| ..+..|+.|++||++.+ .||+.|||+..+ .||.|.+|.+.+|.||++++..|.+|+++++.|+
T Consensus 2 Gv~~~~i~~G--dg~tfpK~Gqtvt~hYtg~L-~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~ 78 (108)
T KOG0544|consen 2 GVEKQVISPG--DGRTFPKKGQTVTVHYTGTL-QDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTIS 78 (108)
T ss_pred CceeEEeeCC--CCcccCCCCCEEEEEEEeEe-cCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeec
Confidence 6889999999 56 77999999999999999 899999999988 8999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011282 460 PSMGYGAEGAGGKIPPNSWLVFDVELIDVR 489 (489)
Q Consensus 460 p~laYG~~g~~~~IPpns~LvfeVeLl~Vr 489 (489)
|.+|||..|.+..||||++|+|+||||+|.
T Consensus 79 pd~aYG~~G~p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 79 PDYAYGPRGHPGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred cccccCCCCCCCccCCCcEEEEEEEEEecC
Confidence 999999999999999999999999999984
No 4
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-24 Score=210.40 Aligned_cols=111 Identities=67% Similarity=1.161 Sum_probs=106.7
Q ss_pred eEECCCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEccCCeEEecCCCCCCeE-EEeCCcccccchHHHhcCCccCcEE
Q 011282 376 VRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFK-FRLGVGEVIKGWDVGVNGMRVGDKR 454 (489)
Q Consensus 376 ~~~~~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~~p~~-f~lG~g~li~GleeaL~gMkvGek~ 454 (489)
.+++++||+|+.++.| +|..+..|++|.|||++++..+|.+|++++...|+. |+||.+.+|+||+.+|.+|++|++|
T Consensus 115 ~~tl~~Gl~y~D~~vG--~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkR 192 (226)
T KOG0552|consen 115 SRTLPGGLRYEDLRVG--SGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKR 192 (226)
T ss_pred ceecCCCcEEEEEEec--CCCCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCee
Confidence 3899999999999999 699999999999999999955999999999999999 9999999999999999999999999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011282 455 RLTIPPSMGYGAEGAGGKIPPNSWLVFDVELIDVR 489 (489)
Q Consensus 455 ~v~IPp~laYG~~g~~~~IPpns~LvfeVeLl~Vr 489 (489)
+|+|||.||||..+.+. ||||+||+|+|+|+.|+
T Consensus 193 rviIPp~lgYg~~g~~~-IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 193 RVIIPPELGYGKKGVPE-IPPNSTLVFDVELLSVK 226 (226)
T ss_pred EEEeCccccccccCcCc-CCCCCcEEEEEEEEecC
Confidence 99999999999999986 99999999999999985
No 5
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.90 E-value=3.2e-23 Score=199.91 Aligned_cols=117 Identities=41% Similarity=0.707 Sum_probs=110.0
Q ss_pred hhhhcCCCeEECCCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEccCCeEEecCCCC-CCeEEEeCCcccccchHHHhc
Q 011282 368 QSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVN 446 (489)
Q Consensus 368 ~~~~k~~~~~~~~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~-~p~~f~lG~g~li~GleeaL~ 446 (489)
..+++...+.++++||+|+|++.| +|..|..++.|.|||++++ .+|++|+++|.+ .|+.|.+| .+|+||.++|.
T Consensus 89 ~~~~k~~gv~~t~sGl~y~vi~~G--~G~~p~~~d~V~v~Y~g~l-~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~ 163 (206)
T PRK11570 89 EENAKKEGVNSTESGLQFRVLTQG--EGAIPARTDRVRVHYTGKL-IDGTVFDSSVARGEPAEFPVN--GVIPGWIEALT 163 (206)
T ss_pred HHhhhcCCcEECCCCcEEEEEeCC--CCCCCCCCCEEEEEEEEEE-CCCCEEEeccCCCCCeEEEee--chhhHHHHHHc
Confidence 556778899999999999999999 6999999999999999999 799999999976 79999995 79999999999
Q ss_pred CCccCcEEEEEECCCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011282 447 GMRVGDKRRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELIDVR 489 (489)
Q Consensus 447 gMkvGek~~v~IPp~laYG~~g~~~~IPpns~LvfeVeLl~Vr 489 (489)
+|++|++++|+|||.+|||..|.++.||||++|+|+|+|++|+
T Consensus 164 ~M~~G~k~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 164 LMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred CCCCCCEEEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEEC
Confidence 9999999999999999999999887899999999999999985
No 6
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.4e-23 Score=191.40 Aligned_cols=110 Identities=45% Similarity=0.832 Sum_probs=100.8
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEccCCeEEecCCCC-CCeEEEeCCcccccchHHHhcCCccCcEEEEE
Q 011282 379 FPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLT 457 (489)
Q Consensus 379 ~~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~-~p~~f~lG~g~li~GleeaL~gMkvGek~~v~ 457 (489)
....|.+.++..-..+..++..||+|.+||++.+ .||++|||||.+ .|++|+||.+++|+||+.+|.+|++|++|+++
T Consensus 66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~l-eDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~ 144 (188)
T KOG0549|consen 66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSL-EDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLI 144 (188)
T ss_pred CCCceeEEEEECCccccccccCCCEEEEEEEEEe-cCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEe
Confidence 4456777777774336788999999999999988 899999999998 69999999999999999999999999999999
Q ss_pred ECCCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011282 458 IPPSMGYGAEGAGGKIPPNSWLVFDVELIDVR 489 (489)
Q Consensus 458 IPp~laYG~~g~~~~IPpns~LvfeVeLl~Vr 489 (489)
|||++|||..|.++.||++++|+|+|+|+.+.
T Consensus 145 IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~ 176 (188)
T KOG0549|consen 145 IPPHLGYGERGAPPKIPGDAVLIFDIELVKIE 176 (188)
T ss_pred cCccccCccCCCCCCCCCCeeEEEEEEEEEee
Confidence 99999999999888899999999999999873
No 7
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.88 E-value=2.2e-22 Score=189.84 Aligned_cols=115 Identities=21% Similarity=0.340 Sum_probs=107.2
Q ss_pred CCeEECCCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEccCCeEEecCCCCCCeEEEeCCcccccchHHHhcCCccCcE
Q 011282 374 SQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDK 453 (489)
Q Consensus 374 ~~~~~~~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~~p~~f~lG~g~li~GleeaL~gMkvGek 453 (489)
..+.++++|++|.++..+.++|..|..||.|.+||++++ .+|.+|++++...|+.|.+|.+.+++||+++|.+|++|++
T Consensus 62 ~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~-~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~ 140 (177)
T TIGR03516 62 VKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRA-LDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGET 140 (177)
T ss_pred CCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEe-CCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCE
Confidence 456889999999999875437889999999999999999 7999999998778999999999999999999999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011282 454 RRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELIDVR 489 (489)
Q Consensus 454 ~~v~IPp~laYG~~g~~~~IPpns~LvfeVeLl~Vr 489 (489)
++|+|||.+|||..|.+..||||++|+|+|+|++|+
T Consensus 141 ~~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 141 ATFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 999999999999999887899999999999999985
No 8
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.85 E-value=9.5e-21 Score=189.30 Aligned_cols=116 Identities=43% Similarity=0.750 Sum_probs=107.9
Q ss_pred hhhhcCCCeEECCCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEccCCeEEecCCCC-CCeEEEeCCcccccchHHHhc
Q 011282 368 QSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVN 446 (489)
Q Consensus 368 ~~~~k~~~~~~~~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~-~p~~f~lG~g~li~GleeaL~ 446 (489)
..+++..++.++++||+|+|+++| +|..|..||.|.|||.+++ .+|++|++++.+ .|+.|.++ .+|+||.++|.
T Consensus 133 ~~~~k~~gv~~t~sGl~y~Vi~~G--~G~~p~~gD~V~V~Y~g~l-~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~ 207 (269)
T PRK10902 133 EKFAKEKGVKTTSTGLLYKVEKEG--TGEAPKDSDTVVVNYKGTL-IDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLK 207 (269)
T ss_pred HHhccCCCcEECCCccEEEEEeCC--CCCCCCCCCEEEEEEEEEe-CCCCEeeccccCCCceEEecC--CcchHHHHHHh
Confidence 567788899999999999999999 6999999999999999998 799999999875 78999884 69999999999
Q ss_pred CCccCcEEEEEECCCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011282 447 GMRVGDKRRLTIPPSMGYGAEGAGGKIPPNSWLVFDVELIDVR 489 (489)
Q Consensus 447 gMkvGek~~v~IPp~laYG~~g~~~~IPpns~LvfeVeLl~Vr 489 (489)
+|++|+++.|+||+.++||..+.+. ||||++|+|+|+|++|+
T Consensus 208 ~Mk~Gek~~l~IP~~laYG~~g~~g-Ippns~LvfeVeLl~V~ 249 (269)
T PRK10902 208 NIKKGGKIKLVIPPELAYGKAGVPG-IPANSTLVFDVELLDVK 249 (269)
T ss_pred cCCCCcEEEEEECchhhCCCCCCCC-CCCCCcEEEEEEEEEec
Confidence 9999999999999999999999875 99999999999999974
No 9
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.77 E-value=1.9e-18 Score=145.65 Aligned_cols=90 Identities=47% Similarity=0.948 Sum_probs=84.0
Q ss_pred CCCCCCCeEEEEEEEEEccCCeEEecCCCC-CCeEEEeCCcccccchHHHhcCCccCcEEEEEECCCCCCCCCCC-CCCC
Q 011282 396 KRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGA-GGKI 473 (489)
Q Consensus 396 ~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~-~p~~f~lG~g~li~GleeaL~gMkvGek~~v~IPp~laYG~~g~-~~~I 473 (489)
..|+.||.|.|||.+++ .+|++|++++.. .|+.|.+|.+.+++||+.||.+|++|++++|+||+.++||..+. +..|
T Consensus 3 ~~~~~gd~V~i~y~~~~-~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~i 81 (94)
T PF00254_consen 3 RTPKEGDTVTIHYTGRL-EDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKI 81 (94)
T ss_dssp SSBSTTSEEEEEEEEEE-TTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTB
T ss_pred ccCCCCCEEEEEEEEEE-CCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCc
Confidence 46899999999999999 599999999755 89999999999999999999999999999999999999999987 4459
Q ss_pred CCCCeEEEEEEEE
Q 011282 474 PPNSWLVFDVELI 486 (489)
Q Consensus 474 Ppns~LvfeVeLl 486 (489)
||+++|+|+|+||
T Consensus 82 p~~~~l~f~Iell 94 (94)
T PF00254_consen 82 PPNSTLVFEIELL 94 (94)
T ss_dssp TTTSEEEEEEEEE
T ss_pred CCCCeEEEEEEEC
Confidence 9999999999997
No 10
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.57 E-value=7.2e-15 Score=136.21 Aligned_cols=72 Identities=28% Similarity=0.547 Sum_probs=68.1
Q ss_pred CCCCCCCeEEEEEEEEEccCCeEEecCCCC-CCeEEEeCCcccccchHHHhcCCccCcEEEEEECCCCCCCCCC
Q 011282 396 KRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEG 468 (489)
Q Consensus 396 ~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~-~p~~f~lG~g~li~GleeaL~gMkvGek~~v~IPp~laYG~~g 468 (489)
+.++.|+.|.|||++++ .+|++|++|+.+ .|+.|.+|.+.+++||++||.+|++|+++.|.|||.+|||...
T Consensus 3 m~i~~~~~V~v~Y~~~~-~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 3 ESVQSNSAVLVHFTLKL-DDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred cccCCCCEEEEEEEEEe-CCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 47889999999999999 899999999974 8999999999999999999999999999999999999999765
No 11
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.5e-14 Score=147.71 Aligned_cols=105 Identities=34% Similarity=0.621 Sum_probs=91.8
Q ss_pred CCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEccCCeEEecCCCCCCeEEEeCC-cccccchHHHhcCCccCcEEEEEE
Q 011282 380 PNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGV-GEVIKGWDVGVNGMRVGDKRRLTI 458 (489)
Q Consensus 380 ~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~~p~~f~lG~-g~li~GleeaL~gMkvGek~~v~I 458 (489)
+.+|+.+|++.|.++-..|..|..|.+||.+++ .++ +|+... ..|.|.+|. ..+|.||+.||..|++|+++.|+|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~-~~~-~f~~~~--~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i 158 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGEL-EDG-VFDQRE--LRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTI 158 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEE-CCc-ceeccc--cceEEecCCccchhHHHHHHHHhcCccceEEEEe
Confidence 889999999999522388999999999999999 566 776653 247777777 479999999999999999999999
Q ss_pred CCCCCCC-CCCCCCCCCCCCeEEEEEEEEEe
Q 011282 459 PPSMGYG-AEGAGGKIPPNSWLVFDVELIDV 488 (489)
Q Consensus 459 Pp~laYG-~~g~~~~IPpns~LvfeVeLl~V 488 (489)
+|.|||| ..+.++.||||++|.|+|+|++|
T Consensus 159 ~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f 189 (397)
T KOG0543|consen 159 DPKYAYGEEGGEPPLIPPNATLLYEVELLDF 189 (397)
T ss_pred CcccccCCCCCCCCCCCCCceEEEEEEEEee
Confidence 9999999 55578889999999999999987
No 12
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.3e-13 Score=128.64 Aligned_cols=72 Identities=28% Similarity=0.573 Sum_probs=68.3
Q ss_pred CCCCCCCeEEEEEEEEEccCCeEEecCCC-CCCeEEEeCCcccccchHHHhcCCccCcEEEEEECCCCCCCCCC
Q 011282 396 KRASPGKQVSVRYIGKLKKNGKIFDSNVG-RAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEG 468 (489)
Q Consensus 396 ~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~-~~p~~f~lG~g~li~GleeaL~gMkvGek~~v~IPp~laYG~~g 468 (489)
+.+..|+.|.|+|++++ .+|.+|++|.. +.|+.|++|.+++|+||++||.+|.+|+++.|.|||..|||.+.
T Consensus 1 m~i~k~~~V~i~Y~~~~-~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 1 MKIEKGDVVSLHYTLKV-EDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred CcccCCCEEEEEEEEEe-cCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 46789999999999999 78999999988 68999999999999999999999999999999999999999875
No 13
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.48 E-value=1.2e-13 Score=132.02 Aligned_cols=72 Identities=25% Similarity=0.454 Sum_probs=68.5
Q ss_pred CCCCCCCeEEEEEEEEEccCCeEEecCCCCCCeEEEeCCcccccchHHHhcCCccCcEEEEEECCCCCCCCCC
Q 011282 396 KRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEG 468 (489)
Q Consensus 396 ~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~~p~~f~lG~g~li~GleeaL~gMkvGek~~v~IPp~laYG~~g 468 (489)
++|..++.|+|+|++++ .+|.+|++|+...|+.|.+|.++++|||+++|.+|.+|+++.|.|||..|||.+.
T Consensus 1 MkI~~~~vV~l~Y~l~~-~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 1 MKVAKDLVVSLAYQVRT-EDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred CccCCCCEEEEEEEEEe-CCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 46788999999999999 7999999998889999999999999999999999999999999999999999875
No 14
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.2e-08 Score=106.02 Aligned_cols=82 Identities=48% Similarity=0.844 Sum_probs=74.1
Q ss_pred cCCCCCCCCCCCCeEEEEEEEEEccCCeEEecCCCCCCeEEEeCCcccccchHHHhcCCccCcEEEEEECCCCCCCCCCC
Q 011282 390 MGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGA 469 (489)
Q Consensus 390 ~G~~~G~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~~p~~f~lG~g~li~GleeaL~gMkvGek~~v~IPp~laYG~~g~ 469 (489)
+|. ....|..|+.|.+||++++ .||+.|+|+....|+.|.+|.|.+|.||..++..|.. |..+.
T Consensus 2 eg~-g~~~p~~g~~v~~hytg~l-~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~ 65 (397)
T KOG0543|consen 2 EGT-GTETPMTGDKVEVHYTGTL-LDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS 65 (397)
T ss_pred CCC-CccCCCCCceeEEEEeEEe-cCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCC
Confidence 453 3467889999999999999 8999999998888999999999999999999999988 77888
Q ss_pred CCCCCCCCeEEEEEEEEE
Q 011282 470 GGKIPPNSWLVFDVELID 487 (489)
Q Consensus 470 ~~~IPpns~LvfeVeLl~ 487 (489)
++.||++++|+|+|+|++
T Consensus 66 pp~ip~~a~l~fe~el~D 83 (397)
T KOG0543|consen 66 PPKIPSNATLLFEVELLD 83 (397)
T ss_pred CCCCCCCcceeeeecccC
Confidence 888999999999999863
No 15
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.73 E-value=6.3e-08 Score=102.64 Aligned_cols=86 Identities=24% Similarity=0.540 Sum_probs=76.7
Q ss_pred CCCCCCCeEEEEEEEEEccCCeEEecCCCCCCeEEEeCCcccccchHHHhcCCccCcEEEEEECCCCCCCCCCCCCCCCC
Q 011282 396 KRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGAGGKIPP 475 (489)
Q Consensus 396 ~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~~p~~f~lG~g~li~GleeaL~gMkvGek~~v~IPp~laYG~~g~~~~IPp 475 (489)
.++..||.|+|+|+++. +|..|+++. ..++.|.+|.+.+++||+.+|.||++|+++.|.+|+...|+.... +
T Consensus 145 ~~~~~gD~V~v~~~~~~--dg~~~~~~~-~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~ 216 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI--DGEAFEGGK-AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----A 216 (408)
T ss_pred cccCCCCEEEEEEEEEE--CCEECcCCC-CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----C
Confidence 36889999999999987 899998764 378999999999999999999999999999999998888886553 6
Q ss_pred CCeEEEEEEEEEeC
Q 011282 476 NSWLVFDVELIDVR 489 (489)
Q Consensus 476 ns~LvfeVeLl~Vr 489 (489)
|.++.|.|+|.+|+
T Consensus 217 gk~~~f~v~i~~I~ 230 (408)
T TIGR00115 217 GKEATFKVTVKEVK 230 (408)
T ss_pred CCeEEEEEEEEEec
Confidence 89999999999884
No 16
>PRK01490 tig trigger factor; Provisional
Probab=98.63 E-value=1.8e-07 Score=100.03 Aligned_cols=86 Identities=24% Similarity=0.566 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEEEEEEEccCCeEEecCCCCCCeEEEeCCcccccchHHHhcCCccCcEEEEEECCCCCCCCCCCCCCCCC
Q 011282 396 KRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGAGGKIPP 475 (489)
Q Consensus 396 ~~~~~Gd~V~i~Y~~~~~~dG~v~dst~~~~p~~f~lG~g~li~GleeaL~gMkvGek~~v~IPp~laYG~~g~~~~IPp 475 (489)
.+++.||.|+|+|.++. +|..|+.+.. .++.|.+|.+.+++||+.+|.||++|+++.|.+++...|+.... +
T Consensus 156 ~~~~~gD~V~vd~~~~~--~g~~~~~~~~-~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----a 227 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI--DGEEFEGGKA-EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----A 227 (435)
T ss_pred ccCCCCCEEEEEEEEEE--CCEECcCCCC-CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----C
Confidence 36899999999999998 8999887643 68999999999999999999999999999999988888876543 6
Q ss_pred CCeEEEEEEEEEeC
Q 011282 476 NSWLVFDVELIDVR 489 (489)
Q Consensus 476 ns~LvfeVeLl~Vr 489 (489)
|.++.|.|+|..|+
T Consensus 228 gk~~~f~v~v~~V~ 241 (435)
T PRK01490 228 GKEATFKVTVKEVK 241 (435)
T ss_pred CCeEEEEEEEEEec
Confidence 78999999999884
No 17
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.9e-06 Score=92.36 Aligned_cols=84 Identities=25% Similarity=0.542 Sum_probs=72.1
Q ss_pred CCCCCeEEEEEEEEEccCCeEEecCCCCCCeEEEeCCcccccchHHHhcCCccCcEEEEEECCCCCCCCCCCCCCCCCCC
Q 011282 398 ASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGAGGKIPPNS 477 (489)
Q Consensus 398 ~~~Gd~V~i~Y~~~~~~dG~v~dst~~~~p~~f~lG~g~li~GleeaL~gMkvGek~~v~IPp~laYG~~g~~~~IPpns 477 (489)
++.||.|+|.|.|+. ||..|..... ..+.|.||.+.|||||+.+|.||+.|+...|.+.....|....+ +|.
T Consensus 158 a~~gD~v~IDf~g~i--Dg~~fegg~a-e~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aGK 229 (441)
T COG0544 158 AENGDRVTIDFEGSV--DGEEFEGGKA-ENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AGK 229 (441)
T ss_pred cccCCEEEEEEEEEE--cCeeccCccc-cCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CCC
Confidence 899999999999987 9998877643 57999999999999999999999999999987766666666544 567
Q ss_pred eEEEEEEEEEeC
Q 011282 478 WLVFDVELIDVR 489 (489)
Q Consensus 478 ~LvfeVeLl~Vr 489 (489)
+..|.|+|..|+
T Consensus 230 ~a~F~V~vkeVk 241 (441)
T COG0544 230 EATFKVKVKEVK 241 (441)
T ss_pred ceEEEEEEEEEe
Confidence 889999998873
No 18
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00015 Score=71.65 Aligned_cols=79 Identities=15% Similarity=0.229 Sum_probs=66.3
Q ss_pred CCCceEEEEEEcCCCCCC--CCCCCCeEEEEEEEEEc-cCCeEEecCCCC-CCeEEEeCCcccccchHHHhcCCccCcEE
Q 011282 379 FPNGLVIEEVAMGKPDGK--RASPGKQVSVRYIGKLK-KNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKR 454 (489)
Q Consensus 379 ~~sGl~~~il~~G~~~G~--~~~~Gd~V~i~Y~~~~~-~dG~v~dst~~~-~p~~f~lG~g~li~GleeaL~gMkvGek~ 454 (489)
.-.|+..+||..| +|. ....|..|.+||..... ..++++|.++.. .|+.+++|.---++-|+..|..|++++.+
T Consensus 8 ~~~gv~Kril~~G--~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva 85 (329)
T KOG0545|consen 8 NVEGVKKRILHGG--TGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVA 85 (329)
T ss_pred cchhhhHhhccCC--CccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence 4568999999999 564 45699999999999863 235789988876 89999999888899999999999999998
Q ss_pred EEEEC
Q 011282 455 RLTIP 459 (489)
Q Consensus 455 ~v~IP 459 (489)
.|++.
T Consensus 86 qF~~d 90 (329)
T KOG0545|consen 86 QFWCD 90 (329)
T ss_pred Hhhhh
Confidence 87654
No 19
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.00099 Score=63.01 Aligned_cols=41 Identities=49% Similarity=0.955 Sum_probs=37.0
Q ss_pred EEeCCcccccchHHHhcCCccCcEEEEEECCCCCCCCCCCC
Q 011282 430 FRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGAEGAG 470 (489)
Q Consensus 430 f~lG~g~li~GleeaL~gMkvGek~~v~IPp~laYG~~g~~ 470 (489)
|.+|.+.+|+|++.+|.+|+.|++++++|||+++||..+..
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~ 41 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG 41 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc
Confidence 46788999999999999999999999999999999965543
No 20
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=86.41 E-value=0.49 Score=54.78 Aligned_cols=8 Identities=25% Similarity=0.705 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 011282 199 ESEDEDGF 206 (489)
Q Consensus 199 ~~~ded~~ 206 (489)
+++|++.|
T Consensus 722 ~~~~~~~m 729 (784)
T PF04931_consen 722 DSSDDEDM 729 (784)
T ss_pred cccccccc
Confidence 33344444
No 21
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=85.70 E-value=0.44 Score=50.96 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=4.2
Q ss_pred CCeEEEeC
Q 011282 426 APFKFRLG 433 (489)
Q Consensus 426 ~p~~f~lG 433 (489)
.++.|+.|
T Consensus 387 gaIDIVkG 394 (458)
T PF10446_consen 387 GAIDIVKG 394 (458)
T ss_pred ccccceec
Confidence 45555554
No 22
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=78.47 E-value=1.9 Score=43.18 Aligned_cols=8 Identities=13% Similarity=0.318 Sum_probs=3.1
Q ss_pred ccceecee
Q 011282 63 NESCPLKL 70 (489)
Q Consensus 63 ~eq~~LdL 70 (489)
+|-|...+
T Consensus 212 CPKCg~et 219 (314)
T PF06524_consen 212 CPKCGYET 219 (314)
T ss_pred CCCCCCcc
Confidence 33444333
No 23
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=73.58 E-value=3.1 Score=44.72 Aligned_cols=6 Identities=33% Similarity=0.999 Sum_probs=2.7
Q ss_pred cccchH
Q 011282 437 VIKGWD 442 (489)
Q Consensus 437 li~Gle 442 (489)
++.||+
T Consensus 391 IVkGLE 396 (458)
T PF10446_consen 391 IVKGLE 396 (458)
T ss_pred ceechh
Confidence 444444
No 24
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=69.35 E-value=3.2 Score=46.98 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=10.5
Q ss_pred CcEEEEEe-cCccEEEeee
Q 011282 76 DVVVFSVK-GPQSIHLAGY 93 (489)
Q Consensus 76 ~~V~f~v~-G~~~VHlsGy 93 (489)
..++|.|+ +.+|+||.=.
T Consensus 74 ~~~~iyViDshRP~~L~Nv 92 (622)
T PF02724_consen 74 EDVTIYVIDSHRPWNLDNV 92 (622)
T ss_pred CceEEEEEeCCCCccHhhc
Confidence 34555554 6777776443
No 25
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=68.17 E-value=4.8 Score=40.48 Aligned_cols=6 Identities=33% Similarity=0.219 Sum_probs=2.6
Q ss_pred EEeeee
Q 011282 89 HLAGYF 94 (489)
Q Consensus 89 HlsGy~ 94 (489)
|--|..
T Consensus 232 hkyGRQ 237 (314)
T PF06524_consen 232 HKYGRQ 237 (314)
T ss_pred chhccc
Confidence 444443
No 26
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=59.70 E-value=8.2 Score=42.34 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=8.3
Q ss_pred CccEEEeeeeeec
Q 011282 85 PQSIHLAGYFEAE 97 (489)
Q Consensus 85 ~~~VHlsGy~~~~ 97 (489)
++..||+=|-...
T Consensus 54 tgalHlrrvesa~ 66 (694)
T KOG4264|consen 54 TGALHLRRVESAK 66 (694)
T ss_pred cCccchhcccccC
Confidence 4667877775544
No 27
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=59.03 E-value=6.4 Score=39.55 Aligned_cols=11 Identities=9% Similarity=-0.233 Sum_probs=7.8
Q ss_pred CCcEEEEEEeC
Q 011282 38 TEKSILQCSVG 48 (489)
Q Consensus 38 ~e~~~v~~~v~ 48 (489)
+|.++||+.+-
T Consensus 57 ~g~~yLymKt~ 67 (303)
T KOG3064|consen 57 NGVLYLYMKTI 67 (303)
T ss_pred CCEEEEEEech
Confidence 56788887753
No 28
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=50.89 E-value=12 Score=44.10 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=9.6
Q ss_pred CCCCCCeEEEEEEEEE
Q 011282 397 RASPGKQVSVRYIGKL 412 (489)
Q Consensus 397 ~~~~Gd~V~i~Y~~~~ 412 (489)
-|..++.|.+..++.+
T Consensus 537 ~P~l~~Lvllklv~~l 552 (840)
T PF04147_consen 537 WPSLSDLVLLKLVGTL 552 (840)
T ss_pred CCChhHHHHHHHHHHh
Confidence 5666777666555544
No 29
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=47.18 E-value=15 Score=32.09 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=15.8
Q ss_pred hhhhcCCCeEECCCceEEEE
Q 011282 368 QSEAKSSQVRTFPNGLVIEE 387 (489)
Q Consensus 368 ~~~~k~~~~~~~~sGl~~~i 387 (489)
..+++..++++++|||+|+|
T Consensus 105 a~n~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 105 AENAKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHHTSTTEEE-TTS-EEEE
T ss_pred HHHcCCCCCEECCCCCeeeC
Confidence 56778899999999999987
No 30
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=44.69 E-value=15 Score=44.19 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=4.1
Q ss_pred EEeeeee
Q 011282 89 HLAGYFE 95 (489)
Q Consensus 89 HlsGy~~ 95 (489)
.|||...
T Consensus 1707 llsgntt 1713 (3015)
T KOG0943|consen 1707 LLSGNTT 1713 (3015)
T ss_pred hccCCcc
Confidence 5666654
No 31
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=40.86 E-value=15 Score=42.72 Aligned_cols=6 Identities=17% Similarity=0.445 Sum_probs=3.2
Q ss_pred cEEEEE
Q 011282 77 VVVFSV 82 (489)
Q Consensus 77 ~V~f~v 82 (489)
.+.|..
T Consensus 635 ~~~~~~ 640 (787)
T PF03115_consen 635 QLYFEM 640 (787)
T ss_dssp EEEEEE
T ss_pred eEeEee
Confidence 455554
No 32
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=38.42 E-value=80 Score=29.13 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.2
Q ss_pred ccccchHHHhcCCccCcEEEEEECC
Q 011282 436 EVIKGWDVGVNGMRVGDKRRLTIPP 460 (489)
Q Consensus 436 ~li~GleeaL~gMkvGek~~v~IPp 460 (489)
.+...|-.||.|.++|+.+.|.+|.
T Consensus 121 S~~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 121 SIESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred ccCChHHHHHhCCCCCCEEEEEcCC
Confidence 4556788999999999999998764
No 33
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=37.69 E-value=25 Score=40.43 Aligned_cols=8 Identities=13% Similarity=0.493 Sum_probs=3.8
Q ss_pred ceeeeCCC
Q 011282 68 LKLEFDED 75 (489)
Q Consensus 68 LdL~F~~~ 75 (489)
.||-|.++
T Consensus 835 cDI~y~Eg 842 (960)
T KOG1189|consen 835 CDIKYTEG 842 (960)
T ss_pred ccceeecc
Confidence 34555544
No 34
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=37.21 E-value=1.3e+02 Score=33.47 Aligned_cols=32 Identities=9% Similarity=0.114 Sum_probs=14.0
Q ss_pred ceEEEeeCCC---C--ccceeceeeeCCCCcEEEEEe
Q 011282 52 PIFLCSLLPN---K--NESCPLKLEFDEDDVVVFSVK 83 (489)
Q Consensus 52 ~~~L~tL~~~---~--~eq~~LdL~F~~~~~V~f~v~ 83 (489)
.|..|++... . ..+.-|.|.+..+-+.+|+.+
T Consensus 375 EIS~V~fsR~~~s~t~trtFD~ei~lk~g~~~tFs~i 411 (615)
T KOG0526|consen 375 EISSVNFSRSGLSGTSTRTFDFEITLKSGTSYTFSNI 411 (615)
T ss_pred ceeeEEEEeccCCccceeeEEEEEEEcCCCeeeeccc
Confidence 3666666432 2 223333333333334666654
No 35
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=33.89 E-value=31 Score=39.23 Aligned_cols=13 Identities=8% Similarity=-0.174 Sum_probs=6.9
Q ss_pred CCCceEEEEEEcC
Q 011282 379 FPNGLVIEEVAMG 391 (489)
Q Consensus 379 ~~sGl~~~il~~G 391 (489)
.-..++|.+|..|
T Consensus 496 ~~~~fr~~~l~dg 508 (622)
T PF02724_consen 496 SLGPFRYCVLKDG 508 (622)
T ss_pred cCCCeEEEEeCCc
Confidence 3344555566555
No 36
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=32.27 E-value=1.3e+02 Score=28.02 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.7
Q ss_pred cccchHHHhcCCccCcEEEEEECC
Q 011282 437 VIKGWDVGVNGMRVGDKRRLTIPP 460 (489)
Q Consensus 437 li~GleeaL~gMkvGek~~v~IPp 460 (489)
+...|-.||.|.++|+.+.+.+|.
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~ 142 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPA 142 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCC
Confidence 456689999999999999998765
No 37
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=27.47 E-value=37 Score=40.03 Aligned_cols=9 Identities=56% Similarity=0.792 Sum_probs=5.1
Q ss_pred CCCCCeEEE
Q 011282 398 ASPGKQVSV 406 (489)
Q Consensus 398 ~~~Gd~V~i 406 (489)
.++||.|.|
T Consensus 408 F~~GD~VeV 416 (1024)
T KOG1999|consen 408 FSPGDAVEV 416 (1024)
T ss_pred cCCCCeEEE
Confidence 455666654
No 38
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=26.16 E-value=40 Score=34.09 Aligned_cols=6 Identities=33% Similarity=0.246 Sum_probs=2.4
Q ss_pred EEEEEE
Q 011282 26 HVTQAT 31 (489)
Q Consensus 26 hLsqa~ 31 (489)
.||.+|
T Consensus 33 NvTGLC 38 (303)
T KOG3064|consen 33 NVTGLC 38 (303)
T ss_pred ccceee
Confidence 344443
No 39
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=24.29 E-value=86 Score=36.12 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=16.4
Q ss_pred CeEEEeCCcccccchHHHhcCCccCc
Q 011282 427 PFKFRLGVGEVIKGWDVGVNGMRVGD 452 (489)
Q Consensus 427 p~~f~lG~g~li~GleeaL~gMkvGe 452 (489)
-|-.+++....+.+|+.-|..--.|.
T Consensus 624 IFcsImsaeDyiDAFEklLkL~LK~~ 649 (822)
T KOG2141|consen 624 IFCSIMSAEDYIDAFEKLLKLSLKGK 649 (822)
T ss_pred heeeeecchHHHHHHHHHHhccCCCc
Confidence 34445666677777777766555554
No 40
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=24.04 E-value=1.9e+02 Score=26.91 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.0
Q ss_pred cccchHHHhcCCccCcEEEEEECCC
Q 011282 437 VIKGWDVGVNGMRVGDKRRLTIPPS 461 (489)
Q Consensus 437 li~GleeaL~gMkvGek~~v~IPp~ 461 (489)
+...|-.||.|.++|+.+.+.+|..
T Consensus 121 ~~SPlG~ALlGk~vGd~v~v~~p~g 145 (157)
T PRK01885 121 IDSPMARALLKKEVGDEVTVNTPAG 145 (157)
T ss_pred ccCHHHHHHhCCCCCCEEEEEcCCC
Confidence 3566899999999999999987653
No 41
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=23.48 E-value=96 Score=34.52 Aligned_cols=6 Identities=50% Similarity=1.077 Sum_probs=2.6
Q ss_pred CCCCcc
Q 011282 203 EDGFPI 208 (489)
Q Consensus 203 ed~~~~ 208 (489)
+||+.+
T Consensus 556 ~dgi~~ 561 (615)
T KOG0526|consen 556 EDGISV 561 (615)
T ss_pred hcCchH
Confidence 345533
No 42
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.72 E-value=26 Score=39.88 Aligned_cols=7 Identities=29% Similarity=0.624 Sum_probs=4.1
Q ss_pred cEEEeee
Q 011282 87 SIHLAGY 93 (489)
Q Consensus 87 ~VHlsGy 93 (489)
||-|.|-
T Consensus 302 PvLl~~M 308 (885)
T KOG2023|consen 302 PVLLSGM 308 (885)
T ss_pred HHHHccC
Confidence 5566664
No 43
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=22.43 E-value=90 Score=28.65 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=21.7
Q ss_pred ccccchHHHhcCCccCcEEEEEECCC
Q 011282 436 EVIKGWDVGVNGMRVGDKRRLTIPPS 461 (489)
Q Consensus 436 ~li~GleeaL~gMkvGek~~v~IPp~ 461 (489)
.+...|-.||.|.++|+.+.|.+|..
T Consensus 116 S~~SPlG~ALlG~~~Gd~v~v~~p~g 141 (151)
T TIGR01462 116 SIDSPLGKALIGKKVGDVVEVQTPKG 141 (151)
T ss_pred cCCCHHHHHHcCCCCCCEEEEEeCCC
Confidence 45567899999999999999987653
No 44
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=21.97 E-value=56 Score=34.75 Aligned_cols=6 Identities=0% Similarity=0.008 Sum_probs=2.3
Q ss_pred cccccC
Q 011282 142 NEEFYS 147 (489)
Q Consensus 142 ~e~~~~ 147 (489)
++++.|
T Consensus 310 e~~map 315 (542)
T KOG0699|consen 310 EGSMAP 315 (542)
T ss_pred hhcccc
Confidence 333333
No 45
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=21.12 E-value=1.7e+02 Score=27.23 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=20.8
Q ss_pred ccccchHHHhcCCccCcEEEEEECC
Q 011282 436 EVIKGWDVGVNGMRVGDKRRLTIPP 460 (489)
Q Consensus 436 ~li~GleeaL~gMkvGek~~v~IPp 460 (489)
.+...|-.||.|.++|+.+.|.+|.
T Consensus 120 S~~SPlG~ALlGk~vGD~v~v~~p~ 144 (158)
T PRK05892 120 TADSPLGQALAGHQAGDTVTYSTPQ 144 (158)
T ss_pred ccCCHHHHHHhCCCCCCEEEEEcCC
Confidence 3445689999999999999998765
No 46
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=20.79 E-value=61 Score=36.77 Aligned_cols=71 Identities=20% Similarity=0.161 Sum_probs=0.0
Q ss_pred cCCCcccCCccCcccccCCCCCCCCcCCCCCCCCCccccccCC-CCCCccccccccc-cCCCCCCCCccccccc
Q 011282 106 YDSDSYGEDIAETETDESSGFDTEDEYGDDFIDDDDNEEFYSS-VPNSGVVIEEIED-DKPMNGNDQPKRLKKK 177 (489)
Q Consensus 106 ~e~es~~ed~~e~eede~~~~dded~~dDd~~dd~d~e~~~~~-~~~~~~~~ee~~~-~~~~~~~~~~~~~kkk 177 (489)
+++++++.+++-++-+-++++.+++.++|++.++.+++..... ...++++ |+-+| +.-..+..---|+.|+
T Consensus 927 sddE~deseeEvSEyeaS~dd~sdet~edees~e~seD~sedeSe~~~~De-E~gEDwdele~kaa~~~rp~k~ 999 (1001)
T COG5406 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDE-EDGEDWDELESKAAYDSRPGKR 999 (1001)
T ss_pred CcccccccchhhhhhhccCCCcccccccccccccccccccccccccccccc-ccccchhhHhhhhhhhccCccc
Done!