Query 011283
Match_columns 489
No_of_seqs 198 out of 1226
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 23:38:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02914 hexokinase 100.0 9E-119 2E-123 939.0 30.5 483 2-485 8-490 (490)
2 PLN02405 hexokinase 100.0 4E-116 9E-121 921.9 30.9 459 28-486 33-493 (497)
3 PLN02362 hexokinase 100.0 1E-114 3E-119 912.9 29.7 460 28-488 33-504 (509)
4 PLN02596 hexokinase-like 100.0 3E-114 6E-119 905.2 30.7 451 28-484 34-486 (490)
5 PTZ00107 hexokinase; Provision 100.0 7E-106 2E-110 841.5 28.8 429 32-484 7-462 (464)
6 KOG1369 Hexokinase [Carbohydra 100.0 4E-104 9E-109 814.9 28.8 444 28-487 23-472 (474)
7 COG5026 Hexokinase [Carbohydra 100.0 9.3E-92 2E-96 703.2 29.4 446 28-486 13-463 (466)
8 PF03727 Hexokinase_2: Hexokin 100.0 5.4E-57 1.2E-61 440.5 10.2 240 239-484 1-243 (243)
9 PF00349 Hexokinase_1: Hexokin 100.0 1.7E-53 3.8E-58 404.0 15.8 202 31-237 2-206 (206)
10 PRK13310 N-acetyl-D-glucosamin 100.0 8E-30 1.7E-34 257.3 19.0 284 92-480 2-301 (303)
11 TIGR00744 ROK_glcA_fam ROK fam 100.0 1.3E-28 2.8E-33 250.1 21.4 301 93-480 1-309 (318)
12 PRK09698 D-allose kinase; Prov 100.0 1.4E-28 3.1E-33 248.1 20.8 286 89-480 3-295 (302)
13 COG1940 NagC Transcriptional r 100.0 2.6E-28 5.6E-33 247.5 18.8 295 87-481 3-307 (314)
14 PRK09557 fructokinase; Reviewe 100.0 3.4E-28 7.4E-33 245.3 17.8 284 91-479 1-299 (301)
15 PRK05082 N-acetylmannosamine k 100.0 1.5E-27 3.2E-32 239.5 19.3 279 92-480 3-287 (291)
16 PRK12408 glucokinase; Provisio 99.9 2.1E-27 4.6E-32 243.0 10.9 298 85-481 10-333 (336)
17 PRK00292 glk glucokinase; Prov 99.9 5.3E-26 1.2E-30 230.9 13.4 290 91-480 3-314 (316)
18 PRK13311 N-acetyl-D-glucosamin 99.9 1.1E-24 2.3E-29 214.9 13.9 233 91-416 1-246 (256)
19 PRK14101 bifunctional glucokin 99.8 3.5E-21 7.6E-26 212.9 11.3 290 90-480 18-329 (638)
20 TIGR00749 glk glucokinase, pro 99.8 7.6E-21 1.6E-25 193.2 10.7 291 93-476 1-316 (316)
21 PF00480 ROK: ROK family; Int 99.8 2.8E-20 6.1E-25 173.1 12.1 175 94-317 1-179 (179)
22 PTZ00288 glucokinase 1; Provis 99.7 1.1E-15 2.5E-20 158.7 15.4 314 91-483 27-392 (405)
23 KOG1794 N-Acetylglucosamine ki 99.2 8.4E-10 1.8E-14 107.1 16.9 309 89-482 2-317 (336)
24 PF02685 Glucokinase: Glucokin 99.1 7.3E-11 1.6E-15 119.6 8.0 292 93-480 1-314 (316)
25 PF01869 BcrAD_BadFG: BadF/Bad 99.1 2E-10 4.3E-15 114.3 11.0 271 93-479 1-271 (271)
26 TIGR02707 butyr_kinase butyrat 99.1 2.2E-09 4.7E-14 110.4 17.8 271 92-454 2-321 (351)
27 PRK03011 butyrate kinase; Prov 99.0 8.4E-09 1.8E-13 106.3 16.5 294 91-478 3-344 (358)
28 smart00732 YqgFc Likely ribonu 98.9 6.8E-09 1.5E-13 86.9 7.6 97 91-232 2-99 (99)
29 COG2971 Predicted N-acetylgluc 98.6 1.1E-06 2.4E-11 87.0 13.6 277 89-480 4-290 (301)
30 COG0837 Glk Glucokinase [Carbo 98.2 2.2E-05 4.8E-10 77.4 13.2 289 91-480 7-318 (320)
31 PRK13318 pantothenate kinase; 97.7 2.3E-05 4.9E-10 77.6 3.5 132 92-257 2-142 (258)
32 PRK00976 hypothetical protein; 97.2 0.0002 4.4E-09 72.3 3.1 77 387-481 235-311 (326)
33 PF00370 FGGY_N: FGGY family o 97.1 0.0014 3.1E-08 64.0 7.4 61 91-154 1-64 (245)
34 TIGR01312 XylB D-xylulose kina 97.1 0.00096 2.1E-08 71.7 6.5 78 93-177 1-85 (481)
35 PRK13321 pantothenate kinase; 96.8 0.00076 1.6E-08 66.7 3.0 136 92-256 2-141 (256)
36 TIGR01315 5C_CHO_kinase FGGY-f 96.5 0.01 2.2E-07 65.0 9.5 73 92-171 2-77 (541)
37 TIGR01314 gntK_FGGY gluconate 96.3 0.01 2.2E-07 64.5 7.5 61 91-154 1-64 (505)
38 TIGR01311 glycerol_kin glycero 96.2 0.0098 2.1E-07 64.4 7.2 61 91-154 2-65 (493)
39 PRK10939 autoinducer-2 (AI-2) 96.2 0.016 3.4E-07 63.2 8.4 61 91-154 4-69 (520)
40 PRK00047 glpK glycerol kinase; 96.0 0.013 2.8E-07 63.5 7.0 61 91-154 6-69 (498)
41 TIGR01234 L-ribulokinase L-rib 96.0 0.016 3.5E-07 63.4 7.4 61 91-154 2-77 (536)
42 PRK15027 xylulokinase; Provisi 95.9 0.02 4.4E-07 61.8 7.6 71 91-170 1-74 (484)
43 PRK10331 L-fuculokinase; Provi 95.5 0.035 7.7E-07 59.7 7.8 60 91-153 3-67 (470)
44 COG1070 XylB Sugar (pentulose 95.2 0.053 1.1E-06 58.9 7.8 63 90-154 4-69 (502)
45 PTZ00294 glycerol kinase-like 95.0 0.064 1.4E-06 58.2 7.8 61 91-154 3-66 (504)
46 TIGR02628 fuculo_kin_coli L-fu 95.0 0.059 1.3E-06 57.9 7.4 59 91-152 2-65 (465)
47 PRK04123 ribulokinase; Provisi 95.0 0.062 1.3E-06 59.0 7.6 61 91-154 4-74 (548)
48 PLN02295 glycerol kinase 94.8 0.083 1.8E-06 57.5 7.8 61 91-154 1-64 (512)
49 COG0554 GlpK Glycerol kinase [ 93.9 0.19 4.2E-06 53.1 7.8 104 89-209 4-119 (499)
50 KOG2517 Ribulose kinase and re 93.3 0.37 8E-06 51.9 8.8 92 89-194 5-101 (516)
51 TIGR00241 CoA_E_activ CoA-subs 91.4 0.37 8.1E-06 47.2 5.8 49 91-154 1-49 (248)
52 PLN02669 xylulokinase 89.9 0.74 1.6E-05 50.7 7.0 59 90-151 8-82 (556)
53 COG1069 AraB Ribulose kinase [ 89.2 0.96 2.1E-05 48.7 6.8 75 395-483 406-480 (544)
54 TIGR02627 rhamnulo_kin rhamnul 88.0 0.8 1.7E-05 49.0 5.5 59 93-151 1-63 (454)
55 TIGR01175 pilM type IV pilus a 85.5 4.3 9.3E-05 41.6 9.1 102 91-212 4-106 (348)
56 PF02782 FGGY_C: FGGY family o 83.5 0.82 1.8E-05 42.6 2.6 46 428-482 152-197 (198)
57 PTZ00009 heat shock 70 kDa pro 82.6 10 0.00023 42.6 11.3 57 195-253 148-208 (653)
58 COG5146 PanK Pantothenate kina 82.2 2.8 6E-05 40.7 5.4 74 220-298 122-199 (342)
59 TIGR03286 methan_mark_15 putat 80.9 3.7 8.1E-05 43.1 6.4 23 86-108 140-162 (404)
60 TIGR01174 ftsA cell division p 78.2 32 0.00068 35.7 12.4 56 92-152 2-59 (371)
61 PF05378 Hydant_A_N: Hydantoin 74.6 5.1 0.00011 37.3 4.8 49 93-153 2-50 (176)
62 PF07318 DUF1464: Protein of u 73.6 50 0.0011 34.0 11.9 48 428-480 263-314 (343)
63 PRK15080 ethanolamine utilizat 72.7 29 0.00062 34.4 10.0 113 84-232 18-131 (267)
64 PTZ00186 heat shock 70 kDa pre 71.9 41 0.0009 37.9 12.0 57 198-256 171-229 (657)
65 KOG0104 Molecular chaperones G 71.8 7.3 0.00016 43.7 5.7 66 193-260 164-236 (902)
66 PRK05183 hscA chaperone protei 71.7 38 0.00082 37.9 11.6 55 195-251 157-213 (616)
67 PRK13410 molecular chaperone D 71.2 6.3 0.00014 44.5 5.4 48 202-251 150-199 (668)
68 TIGR02350 prok_dnaK chaperone 71.1 34 0.00074 38.0 11.1 56 194-251 137-195 (595)
69 PTZ00400 DnaK-type molecular c 70.4 46 0.00099 37.6 12.0 55 194-250 181-237 (663)
70 PRK01433 hscA chaperone protei 67.3 63 0.0014 36.0 12.1 52 199-252 153-206 (595)
71 TIGR02259 benz_CoA_red_A benzo 66.9 6.4 0.00014 41.3 3.9 22 90-111 2-23 (432)
72 PRK13411 molecular chaperone D 66.0 62 0.0013 36.5 11.9 56 194-251 140-198 (653)
73 PF03652 UPF0081: Uncharacteri 65.7 27 0.00058 31.0 7.2 104 91-235 2-105 (135)
74 TIGR00555 panK_eukar pantothen 64.2 11 0.00024 37.8 4.9 46 428-477 233-278 (279)
75 TIGR00671 baf pantothenate kin 64.2 13 0.00029 36.3 5.5 44 93-145 2-45 (243)
76 PF11104 PilM_2: Type IV pilus 64.0 31 0.00067 35.3 8.4 100 94-213 1-101 (340)
77 PRK00290 dnaK molecular chaper 63.7 66 0.0014 36.0 11.6 55 194-250 140-196 (627)
78 PRK13317 pantothenate kinase; 62.7 6.5 0.00014 39.4 3.0 49 428-480 225-273 (277)
79 PRK00109 Holliday junction res 62.6 23 0.0005 31.5 6.2 23 89-111 3-25 (138)
80 COG1069 AraB Ribulose kinase [ 60.8 12 0.00025 40.6 4.6 63 91-156 4-70 (544)
81 PRK13324 pantothenate kinase; 60.3 18 0.00038 35.9 5.5 46 92-146 2-48 (258)
82 PRK08621 galactose-6-phosphate 59.8 7.1 0.00015 35.0 2.4 61 196-257 8-74 (142)
83 CHL00094 dnaK heat shock prote 59.4 93 0.002 34.8 11.7 49 200-250 148-198 (621)
84 TIGR02529 EutJ ethanolamine ut 58.7 46 0.001 32.3 8.2 43 204-251 78-120 (239)
85 TIGR01118 lacA galactose-6-pho 58.6 6.9 0.00015 35.1 2.1 60 197-257 9-74 (141)
86 PF03702 UPF0075: Uncharacteri 58.2 19 0.00042 37.5 5.6 71 239-317 158-230 (364)
87 PRK05571 ribose-5-phosphate is 57.2 3.9 8.5E-05 37.0 0.3 62 196-257 8-77 (148)
88 smart00842 FtsA Cell division 56.9 30 0.00066 32.1 6.3 57 92-153 1-59 (187)
89 COG1924 Activator of 2-hydroxy 56.3 27 0.00059 36.3 6.2 25 87-111 132-156 (396)
90 TIGR02261 benz_CoA_red_D benzo 56.3 35 0.00077 33.8 6.9 21 91-111 2-22 (262)
91 TIGR03192 benz_CoA_bzdQ benzoy 56.0 32 0.00069 34.7 6.6 19 90-108 32-50 (293)
92 PRK11031 guanosine pentaphosph 55.3 44 0.00095 36.3 8.1 63 90-152 6-70 (496)
93 TIGR02133 RPI_actino ribose 5- 54.7 11 0.00023 34.1 2.7 61 197-257 9-77 (148)
94 PRK10854 exopolyphosphatase; P 54.0 43 0.00093 36.6 7.8 62 91-152 12-75 (513)
95 PRK13326 pantothenate kinase; 53.7 22 0.00048 35.3 5.0 45 91-144 7-51 (262)
96 COG4972 PilM Tfp pilus assembl 53.5 25 0.00055 35.9 5.3 126 91-218 11-166 (354)
97 COG1070 XylB Sugar (pentulose 52.5 49 0.0011 36.0 7.9 77 390-483 374-450 (502)
98 PF14574 DUF4445: Domain of un 52.3 19 0.00042 38.1 4.5 38 221-259 146-183 (412)
99 PRK12613 galactose-6-phosphate 51.9 10 0.00022 33.9 2.1 60 196-257 8-73 (141)
100 TIGR03123 one_C_unchar_1 proba 50.6 17 0.00037 37.1 3.7 20 93-112 1-20 (318)
101 TIGR01314 gntK_FGGY gluconate 49.2 14 0.00031 40.0 3.1 77 390-483 374-450 (505)
102 PRK13320 pantothenate kinase; 48.6 34 0.00073 33.5 5.4 17 92-108 4-20 (244)
103 COG0816 Predicted endonuclease 46.8 65 0.0014 28.9 6.4 22 90-111 2-23 (141)
104 PRK10939 autoinducer-2 (AI-2) 43.4 20 0.00043 39.1 3.1 38 213-251 229-268 (520)
105 TIGR01119 lacB galactose-6-pho 43.4 11 0.00024 34.9 0.9 61 197-257 9-76 (171)
106 PRK08622 galactose-6-phosphate 43.3 9.8 0.00021 35.2 0.6 62 196-257 8-76 (171)
107 PRK12615 galactose-6-phosphate 42.9 11 0.00023 35.0 0.8 62 196-257 8-76 (171)
108 TIGR01312 XylB D-xylulose kina 42.8 21 0.00046 38.2 3.3 37 214-251 223-261 (481)
109 PF11215 DUF3010: Protein of u 42.2 46 0.001 29.6 4.6 60 91-154 2-61 (138)
110 TIGR01120 rpiB ribose 5-phosph 41.4 12 0.00026 33.6 0.9 62 196-257 7-75 (143)
111 PTZ00294 glycerol kinase-like 40.5 23 0.0005 38.4 3.1 46 429-483 410-455 (504)
112 cd00529 RuvC_resolvase Hollida 40.4 1E+02 0.0022 27.8 6.8 22 91-112 1-22 (154)
113 PRK09472 ftsA cell division pr 39.4 4.8E+02 0.01 27.5 14.0 21 90-110 8-28 (420)
114 KOG1903 Cell cycle-associated 38.9 26 0.00056 31.9 2.5 82 82-176 50-147 (217)
115 TIGR00241 CoA_E_activ CoA-subs 38.9 24 0.00051 34.4 2.6 42 428-478 206-248 (248)
116 TIGR00250 RNAse_H_YqgF RNAse H 38.2 57 0.0012 28.6 4.7 19 93-111 1-19 (130)
117 TIGR01234 L-ribulokinase L-rib 36.5 41 0.0009 36.8 4.3 42 212-254 255-298 (536)
118 PRK15027 xylulokinase; Provisi 35.6 52 0.0011 35.4 4.9 37 213-250 220-257 (484)
119 TIGR01311 glycerol_kin glycero 35.4 28 0.00061 37.6 2.7 77 390-484 372-449 (493)
120 TIGR03706 exo_poly_only exopol 34.4 91 0.002 31.3 6.1 61 92-152 2-64 (300)
121 TIGR03123 one_C_unchar_1 proba 33.3 30 0.00064 35.4 2.3 21 89-109 127-147 (318)
122 PRK00047 glpK glycerol kinase; 33.2 35 0.00076 36.9 3.0 46 429-483 407-452 (498)
123 PF13941 MutL: MutL protein 33.0 92 0.002 33.5 6.0 54 91-151 1-54 (457)
124 COG0145 HyuA N-methylhydantoin 32.7 34 0.00073 38.7 2.8 24 86-109 274-297 (674)
125 PRK13317 pantothenate kinase; 32.7 39 0.00084 33.8 3.0 22 90-111 2-23 (277)
126 PF02075 RuvC: Crossover junct 32.6 1.3E+02 0.0027 27.1 6.1 58 92-154 1-58 (149)
127 PRK04123 ribulokinase; Provisi 32.5 34 0.00073 37.6 2.8 41 213-255 260-302 (548)
128 COG4820 EutJ Ethanolamine util 32.4 88 0.0019 29.9 5.0 28 85-112 24-51 (277)
129 PF00012 HSP70: Hsp70 protein; 32.4 38 0.00083 37.3 3.2 56 193-250 141-199 (602)
130 PRK10331 L-fuculokinase; Provi 32.4 31 0.00067 37.0 2.4 38 212-251 225-264 (470)
131 COG3734 DgoK 2-keto-3-deoxy-ga 32.2 40 0.00086 33.8 2.9 24 89-112 4-27 (306)
132 PTZ00215 ribose 5-phosphate is 32.0 22 0.00047 32.3 1.0 62 196-257 10-80 (151)
133 PRK13331 pantothenate kinase; 31.2 47 0.001 32.7 3.3 21 88-108 5-25 (251)
134 PF05402 PqqD: Coenzyme PQQ sy 31.0 67 0.0014 24.2 3.5 34 30-63 30-63 (68)
135 COG1521 Pantothenate kinase ty 30.9 82 0.0018 31.1 4.9 44 92-144 2-45 (251)
136 KOG2517 Ribulose kinase and re 30.8 53 0.0012 35.7 3.8 71 402-485 395-465 (516)
137 PF01968 Hydantoinase_A: Hydan 30.7 42 0.00092 33.7 2.9 20 91-111 78-97 (290)
138 PRK03657 hypothetical protein; 29.4 2E+02 0.0044 26.6 6.9 58 42-100 70-135 (170)
139 PTZ00452 actin; Provisional 29.1 50 0.0011 34.4 3.2 55 428-486 296-353 (375)
140 COG0698 RpiB Ribose 5-phosphat 28.8 52 0.0011 29.8 2.8 61 197-257 9-77 (151)
141 PF02502 LacAB_rpiB: Ribose/Ga 28.5 30 0.00065 30.9 1.3 62 196-257 7-75 (140)
142 PF01548 DEDD_Tnp_IS110: Trans 27.8 79 0.0017 27.6 3.9 44 92-144 1-44 (144)
143 PRK00039 ruvC Holliday junctio 27.8 2E+02 0.0044 26.3 6.7 22 91-112 3-24 (164)
144 PTZ00466 actin-like protein; P 26.7 56 0.0012 34.1 3.1 51 428-481 301-354 (380)
145 TIGR03192 benz_CoA_bzdQ benzoy 26.5 49 0.0011 33.4 2.5 68 387-480 218-287 (293)
146 COG3894 Uncharacterized metal- 26.0 73 0.0016 34.5 3.7 38 222-260 311-348 (614)
147 PLN03184 chloroplast Hsp70; Pr 26.0 82 0.0018 35.7 4.5 49 201-251 186-236 (673)
148 TIGR02628 fuculo_kin_coli L-fu 25.8 51 0.0011 35.3 2.7 36 213-250 225-262 (465)
149 TIGR01991 HscA Fe-S protein as 25.4 65 0.0014 35.9 3.5 48 201-250 143-192 (599)
150 PTZ00004 actin-2; Provisional 25.4 55 0.0012 34.1 2.8 51 428-481 299-352 (378)
151 TIGR00689 rpiB_lacA_lacB sugar 24.0 45 0.00098 30.0 1.5 61 197-257 7-74 (144)
152 COG3426 Butyrate kinase [Energ 23.6 7.9E+02 0.017 25.0 11.4 56 389-453 268-323 (358)
153 PF14450 FtsA: Cell division p 23.2 78 0.0017 27.1 2.9 19 92-110 1-19 (120)
154 PLN02295 glycerol kinase 23.1 71 0.0015 34.7 3.2 48 428-484 415-462 (512)
155 PF03309 Pan_kinase: Type III 22.7 74 0.0016 30.1 2.9 19 92-110 1-19 (206)
156 TIGR02350 prok_dnaK chaperone 21.9 1.9E+02 0.0041 32.1 6.3 25 88-112 181-205 (595)
157 TIGR01315 5C_CHO_kinase FGGY-f 21.8 80 0.0017 34.6 3.3 76 390-483 417-492 (541)
158 PRK11678 putative chaperone; P 21.1 1E+02 0.0022 33.2 3.8 50 205-256 175-226 (450)
No 1
>PLN02914 hexokinase
Probab=100.00 E-value=9.4e-119 Score=939.05 Aligned_cols=483 Identities=84% Similarity=1.287 Sum_probs=444.5
Q ss_pred CCcccceeeecCCCCCCceEEEEeecCcccchhhHHHHHhhhcCChhHHHHHHHHHhHhhhccccccCCCCcceeehhcc
Q 011283 2 LPAVGSLCISRTPRGGPRFTMAVRSNVNVSVAPILTKLQKECAAPLPVLRNVADAMTADMRAGLVVDGGGELKMILSYVD 81 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlpt~v~ 81 (489)
.|++||.-.|+.|++.|+.-|++++. ..++.+++++++++|.+|.++|++|+++|.+||++||+.++.|+++||||||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MlpTyv~ 86 (490)
T PLN02914 8 TPAIGSFTFSSRPRRRPRSRMAVRSN-AVSVAPILTKLQKDCATPLPVLRHVADAMAADMRAGLAVDGGGDLKMILSYVD 86 (490)
T ss_pred ccCccceEEecCcccCccHHHHHHHh-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCCCCCcceeccccC
Confidence 58999999999999999999999885 33688999999999999999999999999999999999865688999999999
Q ss_pred cCcCCCccccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCC
Q 011283 82 ALPTGNERGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQ 161 (489)
Q Consensus 82 ~lP~G~E~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~ 161 (489)
++|+|+|+|.|||||||||||||++|++.|++..+..+.+++++||.+++.+++++||||||+||++|++++....+...
T Consensus 87 ~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~ 166 (490)
T PLN02914 87 SLPSGNEKGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPE 166 (490)
T ss_pred CCCCCCeeeEEEEEecCCceEEEEEEEecCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCc
Confidence 99999999999999999999999999998865445555566899999999999999999999999999988753222212
Q ss_pred CceeeeeeEEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccCceE
Q 011283 162 GRQREIGFTFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDEDVM 241 (489)
Q Consensus 162 ~~~~~lG~tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~~~ 241 (489)
++.+++|||||||++|+++++|+|++|||||++++++|+||+++|+++|+|+++||+|+||+|||||||++++|.++++.
T Consensus 167 ~~~l~LGfTFSFP~~Q~si~~g~Li~WTKGF~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~~~~ 246 (490)
T PLN02914 167 GRKREIGFTFSFPVKQTSIDSGILMKWTKGFAVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDDDVM 246 (490)
T ss_pred cccccceeeEeeeeecCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCCCce
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHH
Q 011283 242 VAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIV 321 (489)
Q Consensus 242 iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~ 321 (489)
||+|+|||+|+||+|+.+.|+|+++..+..++|+||||||.|++.||+|+||+.+|+.|.|||+|+||||+||+|||||+
T Consensus 247 iGlIlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEiv 326 (490)
T PLN02914 247 VAVILGTGTNACYVERTDAIPKLQGQKSSSGRTIINTEWGAFSDGLPLTEFDREMDAASINPGEQIFEKTISGMYLGEIV 326 (490)
T ss_pred EEEEEECCeeeEEEeecccccccccCCCCCceEEEeccccccCCCCCCChHHHHHhhCCCCCCcchhhhHHhhhhHHHHH
Confidence 99999999999999999999999876566789999999999965799999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCc
Q 011283 322 RRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGR 401 (489)
Q Consensus 322 R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~ 401 (489)
|++++++++++.||.+..|+.|.++|+|+|++|++|+.|+++++..+.++|++.++++++.+|++++++||++|.+|||+
T Consensus 327 RlvLl~l~~~~~lF~~~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~~~l~~~~~~~~~~~d~~~vr~i~~~V~~RAAr 406 (490)
T PLN02914 327 RRVLLKMAETSDLFGHFVPEKLSTPFALRTPHLCAMQQDNSDDLQAVGSILYDVLGVEASLSARRRVVEVCDTIVKRGGR 406 (490)
T ss_pred HHHHHHHHHhcccccCCCcHhhcCCCccccHHHHHHhcCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred cccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhc
Q 011283 402 LAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASA 481 (489)
Q Consensus 402 l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~ 481 (489)
|+|++|+||+++++.........++.+|++|||||++||.|+++++++++++++++..++|+|++++|||++|||++||+
T Consensus 407 L~Aa~iaail~k~~~~~~~~~~~~~~~VavDGSv~~~~p~f~~~l~~~l~ellg~~~~~~i~i~~a~DGSGvGAAl~AA~ 486 (490)
T PLN02914 407 LAGAGIVGILEKMEEDSKGMIFGKRTVVAMDGGLYEKYPQYRRYMQDAVTELLGLELSKNIAIEHTKDGSGIGAALLAAT 486 (490)
T ss_pred HHHHHHHHHHHHhcccccccCCCceEEEEEeCchhhcCccHHHHHHHHHHHHhCcccCCcEEEEEccCchHHHHHHHHHH
Confidence 99999999999987631100001357999999999999999999999999999877677899999999999999999999
Q ss_pred cccc
Q 011283 482 NSKF 485 (489)
Q Consensus 482 ~~~~ 485 (489)
++.|
T Consensus 487 ~s~~ 490 (490)
T PLN02914 487 NSKY 490 (490)
T ss_pred hhcC
Confidence 9875
No 2
>PLN02405 hexokinase
Probab=100.00 E-value=4.1e-116 Score=921.85 Aligned_cols=459 Identities=60% Similarity=0.999 Sum_probs=421.6
Q ss_pred CcccchhhHHHHHhhhcCChhHHHHHHHHHhHhhhccccccCCCCcceeehhcccCcCCCccccEEEEecCCcceEEEEE
Q 011283 28 VNVSVAPILTKLQKECAAPLPVLRNVADAMTADMRAGLVVDGGGELKMILSYVDALPTGNERGLFYALDLGGTNFRVLRV 107 (489)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~lV 107 (489)
+|..+++++++++++|.+|.++|++|+++|.+||++||+++..|+++||||||+++|||+|+|.|||||||||||||++|
T Consensus 33 ~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~MlpSyv~~lPtG~E~G~flAlDlGGTNfRV~~V 112 (497)
T PLN02405 33 KWARAMEILKEFEEDCATPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPSGDEKGLFYALDLGGTNFRVLRV 112 (497)
T ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCcceeccccccCCCCCcceeEEEEecCCceEEEEEE
Confidence 55678999999999999999999999999999999999986568999999999999999999999999999999999999
Q ss_pred EeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeeccccccccceeee
Q 011283 108 QLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVLIK 187 (489)
Q Consensus 108 ~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~li~ 187 (489)
+|.|++..++.+.+++++||.+++.+++++||||||++|.+|+++++.......++.+++|||||||++|+++++|+|++
T Consensus 113 ~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~ 192 (497)
T PLN02405 113 LLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATEGEDFHLPPGRQRELGFTFSFPVKQTSISSGTLIK 192 (497)
T ss_pred EEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhcccccccCcccccccceeEeeeeccCCCCceEEEE
Confidence 99886544555555689999999999999999999999999998876332111235799999999999999999999999
Q ss_pred eccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccCceEEEEEecCCcceeEEeeccccccccCC
Q 011283 188 WTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVEQMDAIPKLQGN 267 (489)
Q Consensus 188 wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie~~~~i~~~~g~ 267 (489)
|||||++++++|+||+++|+++|+|+++||+|+||+|||||||++++|.++++.||+|+|||+|+||+|+.++|+|+++.
T Consensus 193 WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~ 272 (497)
T PLN02405 193 WTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNPDVVAAVILGTGTNAAYVERAQAIPKWHGL 272 (497)
T ss_pred eccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCCCceEEEEEeCCeeeEEEeecccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCCCeeeecccccc-cCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCcccccccc
Q 011283 268 KSPSGRTIINTEWGAF-SKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMP 346 (489)
Q Consensus 268 ~~~~g~miIn~E~G~f-~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~ 346 (489)
.+..++|+||||||.| +.+||+|+||..+|..|.|||+|+||||+||+|||||+|++++++++++.||++..|+.|.++
T Consensus 273 ~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvLl~l~~~~~lF~g~~~~~L~~~ 352 (497)
T PLN02405 273 LPKSGEMVINMEWGNFRSSHLPLTEYDHALDVESLNPGEQIFEKIISGMYLGEILRRVLLKMAEEAAFFGDTVPPKLKIP 352 (497)
T ss_pred CCCCCeEEEEeccccCCCCCCCCchHHHHHhhcCCCCCcchhhHHHhhccHHHHHHHHHHHHHHhccccCCCCcHhhcCC
Confidence 5667899999999999 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccccccCchhHhhhhhhhhhhcccc-cccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCcccccc
Q 011283 347 FVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVE-SSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGK 425 (489)
Q Consensus 347 ~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~-~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~ 425 (489)
|+|+|++|+.|+.|++++++.+.+++++.|+++ .+.+|++++++||+.|.+|||+|+|++|++|+++++.........+
T Consensus 353 ~~l~T~~ls~i~~D~s~~l~~~~~~l~~~l~~~~~~~~~~~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~ 432 (497)
T PLN02405 353 FILRTPDMSAMHHDTSPDLKVVGSKLKDILEIPNTSLKMRKVVVELCNIVATRGARLSAAGIYGILKKLGRDTVKDGEKQ 432 (497)
T ss_pred CCcccHHHHHHhcCCCchHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCc
Confidence 999999999999999999999999999999987 5558999999999999999999999999999999987421100113
Q ss_pred eeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhcccccc
Q 011283 426 RTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANSKFD 486 (489)
Q Consensus 426 ~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~~~~ 486 (489)
+.+|++|||+|++||.|+++++++++++++++..++|++++++|||++|||++||+++++.
T Consensus 433 ~~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~l~~a~DGSGvGAAl~AA~~~~~~ 493 (497)
T PLN02405 433 KSVIAMDGGLFEHYTEFSKCMESTLKELLGEEVSESIEVEHSNDGSGIGAALLAASHSLYL 493 (497)
T ss_pred ceEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEecCchHHHHHHHHHHHhhhh
Confidence 5789999999999999999999999999987666789999999999999999999998763
No 3
>PLN02362 hexokinase
Probab=100.00 E-value=1.3e-114 Score=912.87 Aligned_cols=460 Identities=55% Similarity=0.922 Sum_probs=420.6
Q ss_pred CcccchhhHHHHHhhhcCChhHHHHHHHHHhHhhhccccccCCCCcceeehhcccCcCCCccccEEEEecCCcceEEEEE
Q 011283 28 VNVSVAPILTKLQKECAAPLPVLRNVADAMTADMRAGLVVDGGGELKMILSYVDALPTGNERGLFYALDLGGTNFRVLRV 107 (489)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~lV 107 (489)
+|..+++++++++++|.+|.++|++|+++|++||++||+++..|+++||||||+++|||+|+|.|||||||||||||++|
T Consensus 33 ~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~MlPTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V 112 (509)
T PLN02362 33 KWRRVVGVLKELEEACETPVGRLRQVVDAMAVEMHAGLASEGGSKLKMLLTFVDDLPTGSEIGTYYALDLGGTNFRVLRV 112 (509)
T ss_pred hhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCceecCccCCCCCCCcceeEEEEecCCceEEEEEE
Confidence 55678999999999999999999999999999999999986568999999999999999999999999999999999999
Q ss_pred EeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeeccccccccceeee
Q 011283 108 QLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVLIK 187 (489)
Q Consensus 108 ~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~li~ 187 (489)
++.|++.....+..++|+||.+++.+++++||||||+||.+|++++....+......+++|||||||++|+++++|+|++
T Consensus 113 ~L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~ 192 (509)
T PLN02362 113 QLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKEENGSEFSQVRRRELGFTFSFPVKQTSISSGILIK 192 (509)
T ss_pred EecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhcCccccccccccccceeEEeeeeccCCCCceEEEE
Confidence 99886545554444579999999999999999999999999999876432111235699999999999999999999999
Q ss_pred eccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccCceEEEEEecCCcceeEEeeccccccccCC
Q 011283 188 WTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVEQMDAIPKLQGN 267 (489)
Q Consensus 188 wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie~~~~i~~~~g~ 267 (489)
|||||++++++|+||+++|+++|+|+++||+|+||+|||||||++++|.++++.||+|+|||+|+||+|+.+.|+|+++.
T Consensus 193 WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~ 272 (509)
T PLN02362 193 WTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHDPDTVAAVIIGTGTNACYLERTDAIIKCQGL 272 (509)
T ss_pred eccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCCCCceEEEEEECCccceEeeehhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCCCeeeecccccc-cCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCcccccccc
Q 011283 268 KSPSGRTIINTEWGAF-SKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMP 346 (489)
Q Consensus 268 ~~~~g~miIn~E~G~f-~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~ 346 (489)
.+..++|+||||||.| +.+||+|+||..+|.+|.|||+|+||||+||+|||||+|++++++++++.||++ .|+.|.++
T Consensus 273 ~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvL~~l~~~~~lF~~-~~~~L~~~ 351 (509)
T PLN02362 273 LTTSGSMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVILRMSQESDIFGP-VSSRLSTP 351 (509)
T ss_pred CCCCCcEEEEeeccCCCCCCCCCchHHHHHhcCCCCcCcchHHHHHhhccHHHHHHHHHHHHHhccccccC-CcHhhcCC
Confidence 5667899999999999 568999999999999999999999999999999999999999999999999975 68889999
Q ss_pred ccccCcccccccccCchhHhhhhhhhhhhcccc-cccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCc-cc--
Q 011283 347 FVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVE-SSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNG-AI-- 422 (489)
Q Consensus 347 ~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~-~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~-~~-- 422 (489)
|+|+|++|+.|+.|++++++.+.++|++.++++ ++.+|++++++||..|.+|||+|+|++|++|+++++...+. ..
T Consensus 352 ~~l~T~~ls~i~~d~s~~l~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~V~~RaArL~Aa~iaail~k~~~~~~~~~~~~ 431 (509)
T PLN02362 352 FVLRTPSVAAMHEDDSPELQEVARILKETLGISEVPLKVRKLVVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGITSG 431 (509)
T ss_pred CccccHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 999999999999999999999999999999987 67899999999999999999999999999999999842110 00
Q ss_pred -------ccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhccccccCC
Q 011283 423 -------FGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANSKFDHD 488 (489)
Q Consensus 423 -------~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~~~~~~ 488 (489)
..++.+|++|||+|++||.|+++++++++++++++...+|.|++++|||++|||++||++++|.+|
T Consensus 432 ~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~i~~a~DGSgvGAAl~AA~~~~~~~~ 504 (509)
T PLN02362 432 RSRSDIQIMRRTVVAVEGGLYTNYTMFREYLHEALNEILGEDVAQHVILKATEDGSGIGSALLAASYSSYSVD 504 (509)
T ss_pred ccccccCCCceEEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEccCchHHHHHHHHHHHHhhhhh
Confidence 013479999999999999999999999999998766778999999999999999999999998665
No 4
>PLN02596 hexokinase-like
Probab=100.00 E-value=2.9e-114 Score=905.17 Aligned_cols=451 Identities=51% Similarity=0.855 Sum_probs=418.3
Q ss_pred CcccchhhHHHHHhhhcCChhHHHHHHHHHhHhhhccccccCCCCcceeehhcccCcCCCccccEEEEecCCcceEEEEE
Q 011283 28 VNVSVAPILTKLQKECAAPLPVLRNVADAMTADMRAGLVVDGGGELKMILSYVDALPTGNERGLFYALDLGGTNFRVLRV 107 (489)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~lV 107 (489)
+|+++++++++|+++|.+|.++|++|+++|.+||++||+.+..|+++||||||+++|||+|+|.|||||+|||||||++|
T Consensus 34 ~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MlpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V 113 (490)
T PLN02596 34 QWKHTQRILRKFARECATPVSKLWEVADALVSDMTASLTAEETTTLNMLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRA 113 (490)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCceecccCCCCCCCCcceEEEEEeeCCceEEEEEE
Confidence 78899999999999999999999999999999999999876568999999999999999999999999999999999999
Q ss_pred EeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeeccccccccceeee
Q 011283 108 QLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVLIK 187 (489)
Q Consensus 108 ~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~li~ 187 (489)
+|.|++..+....+++|+||.+++.+++++||||||+||++|+++++.......+..+++|||||||++|+++++|+|++
T Consensus 114 ~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~ 193 (490)
T PLN02596 114 RLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHPGDEADTPERVKKLGFTVSYPVDQAAASSGSAIK 193 (490)
T ss_pred EEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhccccccCcccccccceEEeeeeeecCCCCEEEEE
Confidence 99876444455555689999999999999999999999999998875432111234699999999999999999999999
Q ss_pred eccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccCceEEEEEecCCcceeEEeeccccccccCC
Q 011283 188 WTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVEQMDAIPKLQGN 267 (489)
Q Consensus 188 wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie~~~~i~~~~g~ 267 (489)
| |||++++++|+||+++|+++++|+++||+|+||+|||||||++++|.++++.||+|+|||+|+||+|+.++|+|+++.
T Consensus 194 W-KgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~ 272 (490)
T PLN02596 194 W-KSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSP 272 (490)
T ss_pred e-ccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCCCeEEEEEEecccceEEEEEccccccccCC
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCCCCeeeecccccc-cCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCcccccccc
Q 011283 268 KSPSGRTIINTEWGAF-SKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMP 346 (489)
Q Consensus 268 ~~~~g~miIn~E~G~f-~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~ 346 (489)
.+..++|+||||||+| +..+|+|+||+.+|+.|.|||+|+||||+||+|||||+|++++++++++.||++..|+.|.++
T Consensus 273 ~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKMiSG~YLGElvRlvl~~l~~~~~lF~~~~~~~L~~~ 352 (490)
T PLN02596 273 SPESQEIVISTEWGNFNSCHLPITEFDASLDAESSNPGSRIFEKLTSGMYLGEIVRRVLLKMAEETALFGDTLPPKLTTP 352 (490)
T ss_pred CCCCCeEEEEeccccCCCCCCCCChHHHHHhccCCCCCcchHHHHHhhhhHHHHHHHHHHHHHHhccccCCCCcHhhcCC
Confidence 5667899999999999 457999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccccccCchhHhhhhhhhhhhcccc-cccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCcccccc
Q 011283 347 FVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVE-SSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGK 425 (489)
Q Consensus 347 ~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~-~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~ 425 (489)
|+|+|++|+.++.|+++++..+.+++++.|+++ ++.+|++++++||.+|.+|||+|+|++|++|++++++... +
T Consensus 353 ~~l~T~~lS~i~~d~s~~~~~~~~~l~~~l~~~~~~~~d~~~lr~i~~~V~~RAArL~Aa~iaail~k~g~~~~-----~ 427 (490)
T PLN02596 353 YLLRSPDMAAMHQDTSEDHEVVNEKLKEIFGITDSTPMAREVVAEVCDIVAERGARLAGAGIVGIIKKLGRIEN-----K 427 (490)
T ss_pred CccccHHHHHHhcCCCchHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----C
Confidence 999999999999999999999999999999986 6779999999999999999999999999999999975321 3
Q ss_pred eeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhcccc
Q 011283 426 RTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANSK 484 (489)
Q Consensus 426 ~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~~ 484 (489)
+++|++|||||++||.|+++++++++++++++...+|.+.+++|||++|||++||+.+.
T Consensus 428 ~~~VavDGSvye~~p~f~~~l~~al~ellg~~~~~~i~~~~s~DGSG~GAAl~AA~~~~ 486 (490)
T PLN02596 428 KSVVTVEGGLYEHYRVFRNYLHSSVWEMLGSELSDNVVIEHSHGGSGAGALFLAACQTG 486 (490)
T ss_pred ceEEEEeCcceeeCcCHHHHHHHHHHHHhCcccCCcEEEEEccCchhHHHHHHHHhhcc
Confidence 57899999999999999999999999999876677899999999999999999998775
No 5
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=7.1e-106 Score=841.52 Aligned_cols=429 Identities=34% Similarity=0.546 Sum_probs=388.0
Q ss_pred chhhHHHHHhhhcCChhHHHHHHHHHhHhhhcccccc---------CCCCcceeehhcccCcCCCccccEEEEecCCcce
Q 011283 32 VAPILTKLQKECAAPLPVLRNVADAMTADMRAGLVVD---------GGGELKMILSYVDALPTGNERGLFYALDLGGTNF 102 (489)
Q Consensus 32 ~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~---------~~s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnl 102 (489)
.+..+++++++|.+|.++|++|+++|++||++||+++ ..|+++||||||+++|+|+|+|.|||||+|||||
T Consensus 7 ~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~~~~~~~~~~s~l~Mlps~v~~lPtG~E~G~fLAlDlGGTN~ 86 (464)
T PTZ00107 7 QRVRLASLVNQFTMSKEKLKELVDYFLYELVEGLEAHRRHRNLWIPNECSFKMLDSCVYNLPTGKEKGVYYAIDFGGTNF 86 (464)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCccccccccCCCCCCCccceEEEEecCCceE
Confidence 4567889999999999999999999999999999875 2588999999999999999999999999999999
Q ss_pred EEEEEEeCCccceeeecccccccccchhhcc---------ChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEee
Q 011283 103 RVLRVQLGGQEERVQATEFEQVSIPQELMCG---------TSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSF 173 (489)
Q Consensus 103 Rv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~---------~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSf 173 (489)
||++|++.|++. ....+++++||..++.+ ++++||||||++|.+|++++.... .....+++||||||
T Consensus 87 RV~~V~L~g~~~--~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~--~~~~~l~lGfTFSF 162 (464)
T PTZ00107 87 RAVRVSLRGGGK--MERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGDPE--DLNKPVPVGFTFSF 162 (464)
T ss_pred EEEEEEeCCCCc--eeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhccccc--cccccccceeEEee
Confidence 999999987532 22233478999998887 899999999999999999875211 01356999999999
Q ss_pred eccccccccceeeeeccceee-----ecCCCchHHHHHHHHHHhcCcceEeeeeecccccccccccccc----CceEEEE
Q 011283 174 PVKQTSIDSGVLIKWTKGFSV-----SGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD----EDVMVAV 244 (489)
Q Consensus 174 P~~q~~i~~g~li~wtKgf~~-----~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~----~~~~igl 244 (489)
|++|+++++|+|++|||||++ ++++|+||+++|+++|+|+++||+|+||+|||||||++++|.+ +++.||+
T Consensus 163 P~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGl 242 (464)
T PTZ00107 163 PCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGV 242 (464)
T ss_pred eeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEE
Confidence 999999999999999999999 8999999999999999999999999999999999999999998 9999999
Q ss_pred EecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHH
Q 011283 245 ILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRV 324 (489)
Q Consensus 245 IlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~ 324 (489)
|+|||+|+||+|+.... ...++|+||||||.|++.+|+|+||..+|+.|.|||+|+||||+||+|||||+|++
T Consensus 243 IlGTG~NacY~E~~~~~-------~~~~~~iINtEwG~F~~~lp~T~~D~~lD~~S~npg~Q~fEKmiSG~YLGEi~Rlv 315 (464)
T PTZ00107 243 IIGTGSNACYFEPEVSA-------YGYAGTPINMECGNFDSKLPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEISRRL 315 (464)
T ss_pred EEeccccceeeehhhcc-------CCCCcEEEEeeccccCCCCCCChHHHHHhhcCCCCCcCchhhHHhhhhHHHHHHHH
Confidence 99999999999964321 12457999999999955699999999999999999999999999999999999999
Q ss_pred HHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCcccc
Q 011283 325 LLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAG 404 (489)
Q Consensus 325 l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~a 404 (489)
++++++++ .|+.+.++++|+|+++++|+.|.++++..+.+++++.+++.++.+|++++++||+.|.+|||+|+|
T Consensus 316 l~~l~~~~------~~~~l~~~~~~~t~~ls~i~~d~s~~l~~~~~~l~~~~~~~~~~~d~~~lr~i~~~V~~RAA~L~A 389 (464)
T PTZ00107 316 IVHLLQLK------APPKMWQSGSFESEDASMILNDQSPDLQFSRQVIKEAWDVDLTDEDLYTIRKICELVRGRAAQLAA 389 (464)
T ss_pred HHHHHhcC------CchhhcCCcccccHHHHhhhcCCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998753 477888999999999999999999999999999999889887789999999999999999999999
Q ss_pred chhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhcccc
Q 011283 405 AGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANSK 484 (489)
Q Consensus 405 a~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~~ 484 (489)
++|+||+++++... .+++|++|||+|++||.|++++++++++++++. ..+|++++++|||++|||++||++++
T Consensus 390 a~iaail~k~~~~~------~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~-~~~v~l~~a~DGSg~GAAl~AA~~~~ 462 (464)
T PTZ00107 390 AFIAAPAKKTRTVQ------GKATVAIDGSVYVKNPWFRRLLQEYINSILGPD-AGNVVFYLADDGSGKGAAIIAAMVAN 462 (464)
T ss_pred HHHHHHHHHhCCCC------CceEEEEeCcceecCccHHHHHHHHHHHHhCCC-CCcEEEEEccCchHHHHHHHHHHhcc
Confidence 99999999988621 357999999999999999999999999998765 56899999999999999999998854
No 6
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-104 Score=814.89 Aligned_cols=444 Identities=48% Similarity=0.758 Sum_probs=409.2
Q ss_pred CcccchhhHHHHHhhhcCChhHHHHHHHHHhHhhhccccccCC-CCcceeehhcccCcCCCccccEEEEecCCcceEEEE
Q 011283 28 VNVSVAPILTKLQKECAAPLPVLRNVADAMTADMRAGLVVDGG-GELKMILSYVDALPTGNERGLFYALDLGGTNFRVLR 106 (489)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~-s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~l 106 (489)
+++.++.+++++++.|.+|.++|++|+++|.+||++||+.... +.++||||||.++|+|+|+|.|||||||||||||++
T Consensus 23 ~~~~~~~~l~~~~~~f~l~~~~L~~v~~~~~~em~~gL~~~~~g~~~~mlpt~V~~lP~G~E~G~~lalDLGGTn~Rv~~ 102 (474)
T KOG1369|consen 23 RLAAVSRQLEELLALFQLPDEQLREVVDAFREEMERGLAKKTHGSAVKMLPTYVPDLPDGTEKGKFLALDLGGTNFRVLL 102 (474)
T ss_pred hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCcccccchhhcccCCCCCcCCCEEEEecCCCceEEEE
Confidence 5788999999999999999999999999999999999995443 349999999999999999999999999999999999
Q ss_pred EEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeeccccccccceee
Q 011283 107 VQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVLI 186 (489)
Q Consensus 107 V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~li 186 (489)
|.+.|++. ...+..++|+||.+++++++++|||+|++|+..|+.+++... ...+++||||||||+|+++++|+|+
T Consensus 103 v~L~g~~~-~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~----~~~l~lgFTFSfP~~Q~si~~g~L~ 177 (474)
T KOG1369|consen 103 VKLGGGRT-SVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLKG----ASKLPLGFTFSFPCRQTSIDKGTLI 177 (474)
T ss_pred EEecCCcc-cceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhcccc----ccccccceEEeeeeeecccccceEE
Confidence 99987643 444455589999999999999999999999999999887531 1229999999999999999999999
Q ss_pred eeccceeeecCCCchHHHHHHHHHHhcCcc-eEeeeeeccccccccccccccCceEEEEEecCCcceeEEeecccccccc
Q 011283 187 KWTKGFSVSGTAGKDVVACLNEAMERQGLD-MRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVEQMDAIPKLQ 265 (489)
Q Consensus 187 ~wtKgf~~~~~~G~dv~~lL~~al~~~~l~-v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie~~~~i~~~~ 265 (489)
.|||||++++++|+|++++|+++++|++++ +.|+||+|||++|+++++|.+++|.||+|+|||+|+||+|+.++|++++
T Consensus 178 ~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~~~~i~k~~ 257 (474)
T KOG1369|consen 178 RWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMEDMRNIEKVE 257 (474)
T ss_pred EecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeeeccchhhcc
Confidence 999999999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCeeeecccccc---cCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCcccc
Q 011283 266 GNKSPSGRTIINTEWGAF---SKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEK 342 (489)
Q Consensus 266 g~~~~~g~miIn~E~G~f---~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~ 342 (489)
+..... +|+||||||.| +..+|+|+||..+|..|.|||+|.||||+||+|||||+|++|+++.+++.||++.. ..
T Consensus 258 ~~~~~~-~miIN~EWG~F~~~~~~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGEivR~vLl~m~~~~~lf~~~~-~~ 335 (474)
T KOG1369|consen 258 GDAGRG-PMCINTEWGAFGDNSLDLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGEIVRLVLLDLLEEGLLFGGQS-TK 335 (474)
T ss_pred cccCCC-ceEEEccccCCCccccccchhhHHHHHhhhcCCcchhHHHHHhccccHHHHHHHHHHHHhHhhhhhcccc-cc
Confidence 866544 89999999999 34689999999999999999999999999999999999999999999999999887 66
Q ss_pred ccccccccCcccccccccCchhHhhhhhhhhhhcccc-cccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCcc
Q 011283 343 LSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVE-SSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGA 421 (489)
Q Consensus 343 l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~-~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~ 421 (489)
+ +|+.|.|+++|+|++|.++++..+.. +.+.+++. .+.+|+..++++|+.|.+|||+|+||||++++++++...
T Consensus 336 l-~p~~~~T~~~S~i~~D~~~~l~~~~~-~~~~l~~~~~~~~~r~~V~~vc~~v~~RaA~L~aagIaail~k~~~~~--- 410 (474)
T KOG1369|consen 336 L-TPFIFETKYVSAIEEDDTGALQETEK-ILDLLGLETTTTEDRKLVREVCDVVSRRAARLAAAGIAAILNKTGELS--- 410 (474)
T ss_pred c-CcceeccchHHhHhcCCchHHHHHHH-HHHhhCCCcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccc---
Confidence 7 99999999999999999999998888 66679987 778999999999999999999999999999999998422
Q ss_pred cccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhccccccC
Q 011283 422 IFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANSKFDH 487 (489)
Q Consensus 422 ~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~~~~~ 487 (489)
...++|++|||+|++||.|++++++++++++++ ...|.|.+++|||++|||++||++++++.
T Consensus 411 --~~~~~VgvdGsly~~yP~f~~~m~~~l~eLlg~--~~~v~i~~s~dgSg~GAAL~Aav~~~~~~ 472 (474)
T KOG1369|consen 411 --RKRVTVGVDGSLYKNHPFFREYLKEALRELLGP--SIHVKLVLSEDGSGRGAALIAAVASRLKQ 472 (474)
T ss_pred --cCceEEEeccchhHcCchHHHHHHHHHHHHhCC--CceEEEEECCCCccccHHHHHHHHhhhhc
Confidence 246789999999999999999999999999983 56899999999999999999999999874
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.3e-92 Score=703.16 Aligned_cols=446 Identities=39% Similarity=0.627 Sum_probs=408.8
Q ss_pred CcccchhhHHHHHhhhcCChhHHHHHHHHHhHhhhccccccCCCCcceeehhcccCcCCCccccEEEEecCCcceEEEEE
Q 011283 28 VNVSVAPILTKLQKECAAPLPVLRNVADAMTADMRAGLVVDGGGELKMILSYVDALPTGNERGLFYALDLGGTNFRVLRV 107 (489)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~lV 107 (489)
.|+.+++.+.++++.|.+|.|+|.++...|.+||++||+...++.++|+|+||...|+|+|.|.||+||+||||||+|+|
T Consensus 13 ~~~~l~~~~~~~~~~~~~p~e~l~~v~~~Fieel~kgL~~~~G~~l~MIP~~v~~~p~g~e~g~~LaiD~GGTnlRvc~V 92 (466)
T COG5026 13 VEAALEQAVEELVESFTVPTEDLREVVKAFIEELEKGLQPKSGDFLPMIPTWVAPLPTGNESGSVLAIDLGGTNLRVCLV 92 (466)
T ss_pred ccHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhccCCCCCCccccccccccCCCCCCCCCCEEEEecCCceEEEEEE
Confidence 67889999999999999999999999999999999999943334499999999999999999999999999999999999
Q ss_pred EeCCccceeeecccccccccchhhcc-ChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeeccccccccceee
Q 011283 108 QLGGQEERVQATEFEQVSIPQELMCG-TSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVLI 186 (489)
Q Consensus 108 ~l~g~~~~i~~~~~~~~~ip~~~~~~-~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~li 186 (489)
.+.|.+...+.+. +..+|.+.... +.+++|++|+++++.|++++.... ....+++|||||||++|+++++|.|+
T Consensus 93 ~l~g~gt~~~~~s--ks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~---~~~~l~~gfTFSYP~~q~sin~g~l~ 167 (466)
T COG5026 93 VLGGDGTFDIEQS--KSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSG---YGSKLPIGFTFSYPLNQTSINEGQLI 167 (466)
T ss_pred EeCCCCCcccccC--cccCchhhccCCChHHHHHHHHHHHHHHHHHhCchh---ccCcceeeEEEeccccccccCceeeE
Confidence 9987754444433 34489887765 789999999999999999876533 25589999999999999999999999
Q ss_pred eeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccCceEEEEEecCCcceeEEeeccccccccC
Q 011283 187 KWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVEQMDAIPKLQG 266 (489)
Q Consensus 187 ~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie~~~~i~~~~g 266 (489)
+|||||++++++|.||+++|+++|++|++|++|++|+|||++|+|+..|.++++.||+|+|||+|+||+++...|+|++.
T Consensus 168 rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~ 247 (466)
T COG5026 168 RWTKGFDIPEVIGTDVVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPR 247 (466)
T ss_pred eecccCcchhhhhhhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred Cc-CCCCCeeeecccccc-cC--CCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCcccc
Q 011283 267 NK-SPSGRTIINTEWGAF-SK--GLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEK 342 (489)
Q Consensus 267 ~~-~~~g~miIn~E~G~f-~~--~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~ 342 (489)
.. ++.+.|+||+|||.| +. +||+|+||..+|..+++||.|.||||+||+||||++|++|.++..++.+|.+..|++
T Consensus 248 d~~~~~~pm~iN~EwGsfdn~~~~Lp~t~ydv~idq~s~~pg~~~~Ek~~sG~yLGellr~~L~~l~~qg~~~~~q~~~~ 327 (466)
T COG5026 248 DDLPETGPMLINCEWGSFDNELSVLPRTKYDVLIDQESPNPGHQIFEKMSSGMYLGELLRLILRNLYEQGLIFNGQDPEK 327 (466)
T ss_pred ccccccCCeEEEecccccCcceeeccccceeeeeccCCCCcchHHHhhhhcceeHHHHHHHHHHHHHHHHhhccccchhh
Confidence 32 577889999999999 33 489999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCccc
Q 011283 343 LSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAI 422 (489)
Q Consensus 343 l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~ 422 (489)
+..|+.++|+.++.++.|++++++.+...+.+.|+.+.+.++++.++.+|+.|.+|||++.|+.++|++.+.+..+
T Consensus 328 ~~~p~~l~t~~~s~i~~D~~~nl~~t~~~f~~~~~~~tt~eer~lI~~l~~~i~~RAArlaa~~iaAi~~ktG~~k---- 403 (466)
T COG5026 328 LTDPFALSTSVLSRIEEDPFENLRNTLTTFLNDFRAPTTKEERKLIRRLVELIGRRAARLAAVPIAAIVIKTGAYK---- 403 (466)
T ss_pred cccceeeecchhhhhccccccccchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHHhhhHHHhhhhcCCCc----
Confidence 9999999999999999999999999999999889998888999999999999999999999999999999998522
Q ss_pred ccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhcccccc
Q 011283 423 FGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANSKFD 486 (489)
Q Consensus 423 ~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~~~~ 486 (489)
...|+.+|+++++||.|+++++++++.+++.... ++.++.++||+++|||++|+.+++-+
T Consensus 404 ---~~~v~~dGsv~e~yp~f~~~~~~~l~~~~g~~~~-~i~i~~a~dgsglGAAl~a~~~~k~~ 463 (466)
T COG5026 404 ---AYHVGADGSVIERYPGFRSMLREALKALLGEEGE-KIKIKPAEDGSGLGAALCALLAQKPK 463 (466)
T ss_pred ---cceeeeecchhhhchhHHHHHHHHHHHhhcccCc-eeeEEecccCcchHHHHHHHHhcccc
Confidence 2459999999999999999999999998884444 89999999999999999999887755
No 8
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=100.00 E-value=5.4e-57 Score=440.54 Aligned_cols=240 Identities=43% Similarity=0.765 Sum_probs=212.2
Q ss_pred ceEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccc-cC--CCcccccccccccccCCcchhhhhhhhchh
Q 011283 239 DVMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAF-SK--GLPLTEFDRDMDAASINPGEQIYEKTISGM 315 (489)
Q Consensus 239 ~~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f-~~--~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~ 315 (489)
+|.||+|+|||+|+||+|+.++|+++++ ..++|+||||||.| .+ .+|+|+||+.+|+.|.|||+|+||||+||+
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~~~~~---~~~~~iINtEwg~f~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~ 77 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIPKLKG---KDGKMIINTEWGNFDNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGM 77 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-TTSST---SSSEEEEEE-GGGTTTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHH
T ss_pred CcEEEEEEeCCeeEEEeeecccCccccc---cCCeEEEEeecCCCCCCCccCCCCcccHHHhhhhhccCceEEeeEecee
Confidence 4899999999999999999999999987 66889999999999 32 369999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhh
Q 011283 316 YLGEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTI 395 (489)
Q Consensus 316 yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V 395 (489)
|||||+|++++++++++.||.+..|+.+.++++|+|++|+.+++|++.++..++.+|.+.+++.++.+|+..+++||++|
T Consensus 78 YLGEl~Rlvl~~l~~~~~lf~~~~~~~l~~~~~~~t~~~s~i~~d~~~~~~~~~~~l~~~~~~~~t~~d~~~lr~I~~aV 157 (243)
T PF03727_consen 78 YLGELVRLVLLDLIKEGLLFGGQDPEKLNTPYSFDTKFLSEIEEDPSDDLSETREILQEFFGLPPTEEDRQILRRICEAV 157 (243)
T ss_dssp HHHHHHHHHHHHHHHTTSSGGGS--TTTTSTTSS-HHHHHHHTCT-TTCHHHHHHHHHHCTTSSS-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCccCCcchHHhcCCCcccHHHHhhhhhhcccchHHHHHHHhhccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999899988999999999999999
Q ss_pred hhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhH
Q 011283 396 VKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGA 475 (489)
Q Consensus 396 ~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGA 475 (489)
++|||+|+|++|+|++++++..... ..++++|++|||+|++||.|++++++++++++.+. ..+|+|++++|||++||
T Consensus 158 ~~RAA~L~Aa~iaail~~~~~~~~~--~~~~v~VavDGSv~~~~p~f~~~l~~~l~~L~~~~-~~~v~~~~~~dgsg~GA 234 (243)
T PF03727_consen 158 STRAARLVAAAIAAILNKIRENKGR--PRREVTVAVDGSVYEKYPNFRERLQEALDELLPEE-GCKVEFVLSEDGSGVGA 234 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTC--SSEEEEEEEESHHHHHSTTHHHHHHHHHHHHSTT--CEEEEEEE-SSTHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhhhccccc--cCCceEEEEeCcceeeCHHHHHHHHHHHHHhcccc-cceEEEEEecCchHHHH
Confidence 9999999999999999997532211 12468999999999999999999999999988764 56799999999999999
Q ss_pred HHHhhcccc
Q 011283 476 ALLASANSK 484 (489)
Q Consensus 476 A~~aa~~~~ 484 (489)
|++||++.|
T Consensus 235 Ai~AA~a~r 243 (243)
T PF03727_consen 235 AIAAAVACR 243 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999875
No 9
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=1.7e-53 Score=403.98 Aligned_cols=202 Identities=48% Similarity=0.778 Sum_probs=169.5
Q ss_pred cchhhHHHHHhhhcCChhHHHHHHHHHhHhhhccccccCC--CCcceeehhcccCcCCCccccEEEEecCCcceEEEEEE
Q 011283 31 SVAPILTKLQKECAAPLPVLRNVADAMTADMRAGLVVDGG--GELKMILSYVDALPTGNERGLFYALDLGGTNFRVLRVQ 108 (489)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~--s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~lV~ 108 (489)
+.++.++++.++|.+|.++|++|+++|++||+.||+++.. ++++||||||+++|+|+|+|.|||||+|||||||++|+
T Consensus 2 ~~~~~v~~~~~~f~~s~~~L~~i~~~f~~em~~gL~~~~~~~~~l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 2 DLQQAVQKLLQQFTLSDEQLQEISDRFLEEMEKGLAKSSSSMSSLKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp HHHHHHHHHHGGGS--HHHHHHHHHHHHHHHHHHHSTTTGCG-SS-EEEESEESSTTSTTEEEEEEEEESSSSEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHccCCCCceeeeccccccccCCCCCCCceEEEEeecCcEEEEEEEE
Confidence 4578899999999999999999999999999999997642 24999999999999999999999999999999999999
Q ss_pred eCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeeccccccccceeeee
Q 011283 109 LGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVLIKW 188 (489)
Q Consensus 109 l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~li~w 188 (489)
+.|.+. .....++++||.+++.+++++||||||+||.+|+++++.. +.++.+++|||||||++|+++++|+|++|
T Consensus 82 L~g~~~--~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~---~~~~~l~lGfTFSFP~~q~~~~~g~li~w 156 (206)
T PF00349_consen 82 LSGNGK--VEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLE---SRDEKLPLGFTFSFPVEQTSLNSGTLIRW 156 (206)
T ss_dssp EESSSE--EEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTT---STTSEEEEEEEEESSEEESSTTEEEE---
T ss_pred EcCCCC--ceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhccc---ccccccceEEEEEEEEEeccCCCeEEEEe
Confidence 987642 2223347999999999999999999999999999987642 13678999999999999999999999999
Q ss_pred ccceeeecCCCchHHHHHHHHHHhcCcc-eEeeeeecccccccccccccc
Q 011283 189 TKGFSVSGTAGKDVVACLNEAMERQGLD-MRVSALVNDTVGTLAGARYWD 237 (489)
Q Consensus 189 tKgf~~~~~~G~dv~~lL~~al~~~~l~-v~v~ai~NDtvatlla~~~~~ 237 (489)
||||++++++|+|++++|+++|+|++++ |+|+||+||||||||+++|.+
T Consensus 157 tKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y~~ 206 (206)
T PF00349_consen 157 TKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAYQD 206 (206)
T ss_dssp -TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHTT-
T ss_pred eccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhcCC
Confidence 9999999999999999999999999998 999999999999999999963
No 10
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.97 E-value=8e-30 Score=257.35 Aligned_cols=284 Identities=20% Similarity=0.221 Sum_probs=214.9
Q ss_pred EEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEE
Q 011283 92 FYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTF 171 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tf 171 (489)
+++||+|||++|++++++.|+ ++.+. +++.|. .+.+++.+.|.+.+.++....+ ....+|+++
T Consensus 2 ~lgidig~t~i~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLE---LQWEE--RVPTPR----DSYDAFLDAVCELVAEADQRFG--------CKGSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCc---EEEEE--EecCCC----cCHHHHHHHHHHHHHHHHhhcC--------CcceEEEeC
Confidence 799999999999999999874 55433 344442 2477889999998888764332 224699999
Q ss_pred eeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEEEec
Q 011283 172 SFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAVILG 247 (489)
Q Consensus 172 SfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~iglIlG 247 (489)
|+|++. +.|.+. ++ +.++|.+.|+.+.|++.+ ++|| .+.||+++++++|+|. +.++.+++.+|
T Consensus 65 pG~vd~---~~g~~~-~~---~~~~w~~~~l~~~l~~~~---~~pV---~ieNDa~aaalaE~~~g~~~~~~~~~~l~~g 131 (303)
T PRK13310 65 PGMPET---EDGTLY-AA---NVPAASGKPLRADLSARL---GRDV---RLDNDANCFALSEAWDDEFTQYPLVMGLILG 131 (303)
T ss_pred CCcccC---CCCEEe-cc---CcccccCCcHHHHHHHHH---CCCe---EEeccHhHHHHHHhhhccccCCCcEEEEEec
Confidence 999975 345543 32 456678889999999988 8997 7999999999999884 56899999999
Q ss_pred CCcceeEEeeccccccccCCcCCCCCeeeeccc----c-----cccCCCcccccccccccccCCcchhhhhhhhchhhHH
Q 011283 248 TGTNACYVEQMDAIPKLQGNKSPSGRTIINTEW----G-----AFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLG 318 (489)
Q Consensus 248 TG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~----G-----~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLg 318 (489)
||++++++.+++.+++.++.++|.|||.++..- | ..| .|++ ++|+|.++|+..|.
T Consensus 132 tGiG~giv~~G~l~~G~~g~aGEiGH~~v~~~~~~~~g~~~~~~~C--------------~CG~--~gclE~~~S~~al~ 195 (303)
T PRK13310 132 TGVGGGLVFNGKPISGRSYITGEFGHMRLPVDALTLLGWDAPLRRC--------------GCGQ--KGCIENYLSGRGFE 195 (303)
T ss_pred CceEEEEEECCEEeeCCCCccccccceeecccccccccccCCCccC--------------CCCC--cchHHHhhcHHHHH
Confidence 999999999999999999999999999997431 1 012 4666 47999999999985
Q ss_pred HHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhc
Q 011283 319 EIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKR 398 (489)
Q Consensus 319 ei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~R 398 (489)
+.++... + . .++ ..++++. ++..+..|..++++
T Consensus 196 ~~~~~~~------~--------~------~~~-----------------~~~l~~~----------~~~gd~~a~~~~~~ 228 (303)
T PRK13310 196 WLYQHYY------G--------E------PLQ-----------------APEIIAL----------YYQGDEQAVAHVER 228 (303)
T ss_pred HHHHHhc------c--------C------CCC-----------------HHHHHHH----------HHcCCHHHHHHHHH
Confidence 5443210 0 0 000 1122332 22335889999999
Q ss_pred CCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhH
Q 011283 399 GGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGA 475 (489)
Q Consensus 399 aA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGA 475 (489)
+++++|.+|+++++.++| + .|++||++.+ .+.|.+.+++.+++...+.. ..++|+.+ +|++.+||
T Consensus 229 ~~~~la~~l~n~~~~ldP--------~--~IvlgG~~~~-~~~~~~~l~~~~~~~~~~~~-~~~~i~~s~~~~~a~~~GA 296 (303)
T PRK13310 229 YLDLLAICLGNILTIVDP--------H--LVVLGGGLSN-FDAIYEQLPKRLPRHLLPVA-RVPRIEKARHGDAGGVRGA 296 (303)
T ss_pred HHHHHHHHHHHHHHHcCC--------C--EEEECCcccC-hHHHHHHHHHHHHHHhcccc-cCceEEEcccCchHHHHhH
Confidence 999999999999999998 2 5889999988 78899999999987654332 35666655 68899999
Q ss_pred HHHhh
Q 011283 476 ALLAS 480 (489)
Q Consensus 476 A~~aa 480 (489)
|.++.
T Consensus 297 a~~~l 301 (303)
T PRK13310 297 AFLHL 301 (303)
T ss_pred HHHhh
Confidence 98764
No 11
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=99.96 E-value=1.3e-28 Score=250.05 Aligned_cols=301 Identities=19% Similarity=0.194 Sum_probs=220.7
Q ss_pred EEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEe
Q 011283 93 YALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFS 172 (489)
Q Consensus 93 LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfS 172 (489)
|+||+|||++|++++++.|+ ++.+. +++.+ .+.+++++.|.+.|.+++++.+.. ..+...+|+++|
T Consensus 1 lgidig~t~~~~~l~d~~g~---i~~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~----~~~i~gIgva~p 66 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGN---ILSKW--KVPTD-----TTPETIVDAIASAVDSFIQHIAKV----GHEIVAIGIGAP 66 (318)
T ss_pred CEEEeCCCEEEEEEECCCCC---EEEEE--EeCCC-----CCHHHHHHHHHHHHHHHHHhcCCC----ccceEEEEEecc
Confidence 58999999999999999874 55432 23333 246789999999999999876532 145788999999
Q ss_pred eeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEEEecC
Q 011283 173 FPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAVILGT 248 (489)
Q Consensus 173 fP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~iglIlGT 248 (489)
+|++. .+|.+. |+- ..+|.+.|+.+.|++.+ ++|| .+.||+++++++|.|. +.++.+.+++||
T Consensus 67 G~vd~---~~g~~~-~~~---~~~w~~~~l~~~l~~~~---~~pv---~v~NDa~~~alaE~~~g~~~~~~~~~~v~igt 133 (318)
T TIGR00744 67 GPVNR---QRGTVY-FAV---NLDWKQEPLKEKVEARV---GLPV---VVENDANAAALGEYKKGAGKGARDVICITLGT 133 (318)
T ss_pred ccccC---CCCEEE-ecC---CCCCCCCCHHHHHHHHH---CCCE---EEechHHHHHHHHHHhcccCCCCcEEEEEeCC
Confidence 99975 345433 321 22566789999999988 8897 7999999999999874 568899999999
Q ss_pred CcceeEEeeccccccccCCcCCCCCeeeecccc-cccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHH
Q 011283 249 GTNACYVEQMDAIPKLQGNKSPSGRTIINTEWG-AFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLK 327 (489)
Q Consensus 249 G~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G-~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~ 327 (489)
|+|++++.+++.+++.++.++|.|||.++.+ | .-| .|++ ++|+|.++|+..|.+.++.....
T Consensus 134 GiG~giv~~G~~~~G~~g~agEiGh~~v~~~-g~~~C--------------~cG~--~gclE~~~s~~al~~~~~~~~~~ 196 (318)
T TIGR00744 134 GLGGGIIINGEIRHGHNGVGAEIGHIRMVPD-GRLLC--------------NCGK--QGCIETYASATGLVRYAKRANAK 196 (318)
T ss_pred ccEEEEEECCEEeecCCCCCcccCceEeCCC-CCccc--------------CCCC--cchHHHHhCHHHHHHHHHHHhcc
Confidence 9999999999999999998999999999755 4 234 3666 47999999999995543321100
Q ss_pred HhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchh
Q 011283 328 MAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGI 407 (489)
Q Consensus 328 ~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~l 407 (489)
. ..++.+ ........ .....+++. ++..+..|..+++++++++|.+|
T Consensus 197 -------~--~~~~~~-----------~~~~~~~~---~~~~~i~~~----------~~~gD~~a~~i~~~~~~~L~~~i 243 (318)
T TIGR00744 197 -------P--ERAEVL-----------LALGDGDG---ISAKHVFVA----------ARQGDPVAVDSYREVARWAGAGL 243 (318)
T ss_pred -------c--cccchh-----------hcccccCC---CCHHHHHHH----------HHCCCHHHHHHHHHHHHHHHHHH
Confidence 0 000000 00000000 012233332 33345899999999999999999
Q ss_pred hHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhHHHHhh
Q 011283 408 VSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGAALLAS 480 (489)
Q Consensus 408 aaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGAA~~aa 480 (489)
+++++.++| + .|+++|++....+.|.+.+++.+++...+.....++|+.+ ++++.+|||.++.
T Consensus 244 ~~~~~~~dP--------~--~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~~ 309 (318)
T TIGR00744 244 ADLASLFNP--------S--AIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLAR 309 (318)
T ss_pred HHHHHHhCC--------C--EEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHHH
Confidence 999999998 2 5899999999999999999999987654433345666654 6889999998854
No 12
>PRK09698 D-allose kinase; Provisional
Probab=99.96 E-value=1.4e-28 Score=248.11 Aligned_cols=286 Identities=16% Similarity=0.169 Sum_probs=211.6
Q ss_pred cccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeee
Q 011283 89 RGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIG 168 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG 168 (489)
.+++++||+|||++|++++++.|+ ++.+. +++.|.. .+.+ .++.+++.|.+++++.+ .+...+|
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~---i~~~~--~~~~~~~---~~~~-~~~~l~~~i~~~~~~~~-------~~i~gig 66 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGE---ILHCE--KKRTAEV---IAPD-LVSGLGEMIDEYLRRFN-------ARCHGIV 66 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCC---EEEEE--EeCCccc---cchH-HHHHHHHHHHHHHHHcC-------CCeeEEE
Confidence 467999999999999999999874 55432 3444422 2334 49999999999987643 2468899
Q ss_pred eEEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc---cCceEEEEE
Q 011283 169 FTFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW---DEDVMVAVI 245 (489)
Q Consensus 169 ~tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~---~~~~~iglI 245 (489)
+++|+|++. +.+.++. +..+...+|.+.|+.+.|++++ ++|| .+.||+++++++|.+. +.++.+++.
T Consensus 67 ia~pG~vd~---~~g~i~~-~~~~~~~~~~~~~l~~~l~~~~---~~pv---~v~NDa~aaa~~E~~~~~~~~~~~~~v~ 136 (302)
T PRK09698 67 MGFPALVSK---DRRTVIS-TPNLPLTALDLYDLADKLENTL---NCPV---FFSRDVNLQLLWDVKENNLTQQLVLGAY 136 (302)
T ss_pred EeCCcceeC---CCCEEEe-cCCCCccccccCCHHHHHHHHh---CCCE---EEcchHhHHHHHHHHhcCCCCceEEEEE
Confidence 999999975 3454443 2222222678899999999988 8997 7999999999998763 456899999
Q ss_pred ecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHH
Q 011283 246 LGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVL 325 (489)
Q Consensus 246 lGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l 325 (489)
+|||+|++++.+++.+++.++.++|.|||.++.+ |..| .|+++ +|+|.++|+..|.+..+.
T Consensus 137 lgtGIG~giv~~G~~~~G~~g~agEiGh~~v~~~-~~~C--------------~CG~~--gclE~~~S~~al~~~~~~-- 197 (302)
T PRK09698 137 LGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDM-TQHC--------------GCGNP--GCLETNCSGMALRRWYEQ-- 197 (302)
T ss_pred ecCceEEEEEECCEEeeCCCCCccccCceEeeCC-Cccc--------------CCCCc--cchHhhcCHHHHHHHHHH--
Confidence 9999999999999999999998999999999755 3333 36775 799999999998443221
Q ss_pred HHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccc
Q 011283 326 LKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGA 405 (489)
Q Consensus 326 ~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa 405 (489)
. +. + .+ ..++++. .+| ..+++++++++|.
T Consensus 198 -~-------~~---~--------~~-----------------~~~l~~~-------~~~--------~~~~~~~~~~la~ 226 (302)
T PRK09698 198 -Q-------PR---D--------YP-----------------LSDLFVH-------AGD--------HPFIQSLLENLAR 226 (302)
T ss_pred -h-------cC---C--------CC-----------------HHHHHHH-------cCC--------HHHHHHHHHHHHH
Confidence 0 00 0 00 1112221 011 1366778889999
Q ss_pred hhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhC-cccccceEEEec---cCCcchhHHHHhh
Q 011283 406 GIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLG-TEISKNVVIEHT---KDGSGIGAALLAS 480 (489)
Q Consensus 406 ~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~-~~~~~~v~i~~a---~Dgs~iGAA~~aa 480 (489)
+|+++++.++| ..|++||++.+..+.|.+.+++.+++.+. +.....++|+.+ ++++.+|||.++.
T Consensus 227 ~l~~li~~ldP----------~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 227 AIATSINLFDP----------DAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred HHHHHHHHhCC----------CEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 99999999998 35899999999888889999999988764 222345666655 7889999998864
No 13
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.6e-28 Score=247.52 Aligned_cols=295 Identities=20% Similarity=0.262 Sum_probs=216.9
Q ss_pred CccccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceee
Q 011283 87 NERGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQRE 166 (489)
Q Consensus 87 ~E~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~ 166 (489)
.+..++++||+|||+++++++++.|+ ++... +.++|... ..+++.+.|.+.++++++..+ . ....
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~~g~---~l~~~--~~~~~~~~---~~~~~~~~i~~~i~~~~~~~~-~------~~~~ 67 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDLDGE---ILLRE--RIPTPTPD---PEEAILEAILALVAELLKQAQ-G------RVAI 67 (314)
T ss_pred ccCcEEEEEEecCCEEEEEEECCCCc---EEEEE--EEecCCCC---chhHHHHHHHHHHHHHHHhcC-C------cCce
Confidence 34567999999999999999999885 44432 34445431 235889999999999987653 1 2345
Q ss_pred eeeEEeeeccccccccce-eeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceE
Q 011283 167 IGFTFSFPVKQTSIDSGV-LIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVM 241 (489)
Q Consensus 167 lG~tfSfP~~q~~i~~g~-li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~ 241 (489)
+|+++++|.+. +++. +..+. +++.+.+.|+.+.|++.+ ++|| .|.||+|+++++|+|. +.+++
T Consensus 68 iGIgi~~pg~~---~~~~~~~~~~---~~~~~~~~~l~~~L~~~~---~~Pv---~veNDan~aalaE~~~g~~~~~~~~ 135 (314)
T COG1940 68 IGIGIPGPGDV---DNGTVIVPAP---NLGWWNGVDLAEELEARL---GLPV---FVENDANAAALAEAWFGAGRGIDDV 135 (314)
T ss_pred EEEEeccceec---cCCcEEeecC---CCCccccccHHHHHHHHH---CCCE---EEecHHHHHHHHHHHhCCCCCCCCE
Confidence 77777777654 2333 22221 333445679999999998 8998 7999999999999995 45799
Q ss_pred EEEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHH
Q 011283 242 VAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIV 321 (489)
Q Consensus 242 iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~ 321 (489)
+++++|||++++++.+++.+++.++.++|.|||.++.... | .|++. +|+|.++|+..|-
T Consensus 136 ~~i~~gtGIG~giv~~g~l~~G~~g~age~Gh~~v~~~g~--c--------------~cG~~--GclE~~as~~al~--- 194 (314)
T COG1940 136 VYITLGTGIGGGIIVNGKLLRGANGNAGEIGHMVVDPDGE--C--------------GCGRR--GCLETYASGRAIL--- 194 (314)
T ss_pred EEEEEccceeEEEEECCEEeecCCCccccccceEECCCCc--c--------------CCCCC--CchHHhccHHHHH---
Confidence 9999999999999999999999999889999999997744 3 36774 7999999999994
Q ss_pred HHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCc
Q 011283 322 RRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGR 401 (489)
Q Consensus 322 R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~ 401 (489)
|.+.... +..... . ....+++. +...+..|+.++++++.
T Consensus 195 ~~~~~~~-----------~~~~~~---~-----------------~~~~i~~~----------a~~gd~~a~~~~~~~~~ 233 (314)
T COG1940 195 RRAAEAL-----------ESEAGE---L-----------------TAKDIFEL----------AAAGDPLAKEVIERAAD 233 (314)
T ss_pred HHHHhhc-----------cccccC---c-----------------CHHHHHHH----------HHcCCHHHHHHHHHHHH
Confidence 4331110 000000 0 12234443 44455899999999999
Q ss_pred cccchhhHHHHhhhccCCcccccceeEEEecC-ccccchhHHHHHHHHHHHHhhCcccccceEEE---ec-cCCcchhHH
Q 011283 402 LAGAGIVSILQKIDEDSNGAIFGKRTVVAMDG-GLYEHYTQYRRYVHEAVTELLGTEISKNVVIE---HT-KDGSGIGAA 476 (489)
Q Consensus 402 l~aa~laaii~~~~~~~~~~~~~~~~~I~i~G-sv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~---~a-~Dgs~iGAA 476 (489)
++|.+|+++++.++| + .|+++| ++....+.+.+.+++.+...... ......+. .. ++++++|||
T Consensus 234 ~la~~ianl~~~~~P--------~--~IvigG~g~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~ga~ 302 (314)
T COG1940 234 YLARGLANLINLLDP--------E--VIVIGGGGVSALGDLLLPRLRKLLAKYLFP-PVLRPRIVEAALGGNDAGLIGAA 302 (314)
T ss_pred HHHHHHHHHHHhcCC--------C--eEEEECcccccchhHHHHHHHHHHHHhhcc-hhcccchhhhhcccccccchhHH
Confidence 999999999999998 2 577888 99999999999999988876543 11122222 23 799999999
Q ss_pred HHhhc
Q 011283 477 LLASA 481 (489)
Q Consensus 477 ~~aa~ 481 (489)
.++..
T Consensus 303 ~~~~~ 307 (314)
T COG1940 303 LLALL 307 (314)
T ss_pred HHHHH
Confidence 98764
No 14
>PRK09557 fructokinase; Reviewed
Probab=99.96 E-value=3.4e-28 Score=245.31 Aligned_cols=284 Identities=15% Similarity=0.150 Sum_probs=209.6
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeE
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFT 170 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~t 170 (489)
.+|+||+|||++|++++++.|+ ++.+. +++.|. .+.+++.+.|++.+.++....+ ....+|++
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gIgi~ 63 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGE---ELFRK--RLPTPR----DDYQQTIEAIATLVDMAEQATG--------QRGTVGVG 63 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCC---EEEEE--EecCCC----CCHHHHHHHHHHHHHHHHhhcC--------CceEEEec
Confidence 3799999999999999999874 55432 344442 2467888888888888765432 24679999
Q ss_pred EeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEEEe
Q 011283 171 FSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAVIL 246 (489)
Q Consensus 171 fSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~iglIl 246 (489)
+|+|++. ++|.+... +...+.+.|+.+.|++++ ++|| .+.||+++++++|.+. +.++.+.+++
T Consensus 64 ~pG~vd~---~~g~i~~~----~~~~~~~~~l~~~l~~~~---~~pv---~~~NDa~aaA~aE~~~g~~~~~~~~~~l~i 130 (301)
T PRK09557 64 IPGSISP---YTGLVKNA----NSTWLNGQPLDKDLSARL---NREV---RLANDANCLAVSEAVDGAAAGKQTVFAVII 130 (301)
T ss_pred CcccCcC---CCCeEEec----CCccccCCCHHHHHHHHH---CCCE---EEccchhHHHHHHHHhcccCCCCcEEEEEE
Confidence 9999975 34554421 112235789999999998 7897 7999999999999874 5688999999
Q ss_pred cCCcceeEEeeccccccccCCcCCCCCeeeecc--------cccccCCCcccccccccccccCCcchhhhhhhhchhhHH
Q 011283 247 GTGTNACYVEQMDAIPKLQGNKSPSGRTIINTE--------WGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLG 318 (489)
Q Consensus 247 GTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E--------~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLg 318 (489)
|||++++++.+++.+++.++.++|.|||.++.. -|..| .|++ .+|+|.++|+.+|.
T Consensus 131 gtGiG~giv~~G~l~~G~~g~aGEiGH~~v~~~~~~~~~~~~g~~c--------------~cG~--~GclE~~~S~~al~ 194 (301)
T PRK09557 131 GTGCGAGVAINGRVHIGGNGIAGEWGHNPLPWMDEDELRYRNEVPC--------------YCGK--QGCIETFISGTGFA 194 (301)
T ss_pred ccceEEEEEECCEEEecCCCCCcccCceecccccccccccCCCCcC--------------CCCC--CCEEeEEEcHHHHH
Confidence 999999999999999999998999999998531 12112 4666 47999999999995
Q ss_pred HHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhc
Q 011283 319 EIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKR 398 (489)
Q Consensus 319 ei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~R 398 (489)
+.++... ... ++ ...+++. ++..+..|+.++++
T Consensus 195 ~~~~~~~--------------~~~------~~-----------------~~~l~~~----------~~~gd~~a~~~l~~ 227 (301)
T PRK09557 195 TDYRRLS--------------GKA------LK-----------------GSEIIRL----------VEEGDPVAELAFRR 227 (301)
T ss_pred HHHHHhc--------------cCC------CC-----------------HHHHHHH----------HHcCCHHHHHHHHH
Confidence 4333210 000 00 1123332 22345889999999
Q ss_pred CCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhH
Q 011283 399 GGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGA 475 (489)
Q Consensus 399 aA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGA 475 (489)
+++++|.+|+++++.++| ..|+++|++... +.|.+.+++.+++...+.. ..++|+.+ ++++.+||
T Consensus 228 ~~~~La~~l~~l~~~ldP----------~~IvlgG~~~~~-~~~~~~l~~~~~~~~~~~~-~~~~i~~s~~~~~a~~~GA 295 (301)
T PRK09557 228 YEDRLAKSLAHVINILDP----------DVIVLGGGMSNV-DRLYPTLPALLKQYVFGGE-CETPVRKALHGDSSGVRGA 295 (301)
T ss_pred HHHHHHHHHHHHHHHhCC----------CEEEEcCcccch-HHHHHHHHHHHHHHhcccc-cCCeEEEcccCCchhhhhh
Confidence 999999999999999998 258999999885 7788889999987654322 24566654 78899999
Q ss_pred HHHh
Q 011283 476 ALLA 479 (489)
Q Consensus 476 A~~a 479 (489)
|.++
T Consensus 296 a~~~ 299 (301)
T PRK09557 296 AWLW 299 (301)
T ss_pred hHhh
Confidence 9864
No 15
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=99.95 E-value=1.5e-27 Score=239.47 Aligned_cols=279 Identities=18% Similarity=0.195 Sum_probs=206.6
Q ss_pred EEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEE
Q 011283 92 FYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTF 171 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tf 171 (489)
+|+||+|||++|++++++.|+ ++... +++.|.. .+.+++.+.|.+.+.++.. +...+|+++
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~---i~~~~--~~~~~~~---~~~~~~~~~i~~~i~~~~~-----------~~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQ---IRQRR--QIPTPAS---QTPEALRQALSALVSPLQA-----------QADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCc---EEEEE--EecCCCC---CCHHHHHHHHHHHHHHhhh-----------cCcEEEEeC
Confidence 799999999999999999874 55432 3444432 3466788888888877642 135699999
Q ss_pred eeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc---cCceEEEEEecC
Q 011283 172 SFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW---DEDVMVAVILGT 248 (489)
Q Consensus 172 SfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~---~~~~~iglIlGT 248 (489)
|+|++. +....+ ...+.++|.+.|+.+.|++.+ ++|| .|.||+++.+++|.+. +.++.+.+.+||
T Consensus 64 pG~vd~-----~~~~~~-~~~~~~~w~~~~l~~~l~~~~---~~pv---~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~ 131 (291)
T PRK05082 64 TGIIND-----GILTAL-NPHNLGGLLHFPLVQTLEQLT---DLPT---IALNDAQAAAWAEYQALPDDIRNMVFITVST 131 (291)
T ss_pred cccccC-----CeeEEe-cCCCCccccCCChHHHHHHHh---CCCE---EEECcHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 999872 222111 122344667889999999888 8997 7999999999999874 567899999999
Q ss_pred CcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHH
Q 011283 249 GTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKM 328 (489)
Q Consensus 249 G~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~ 328 (489)
|+|++++.+++.+++.++.++|.|||.++.+ |..| .|+++ +|+|.|+|+.+|- |.+. ..
T Consensus 132 GiG~giv~~G~~~~G~~g~AGEiGh~~v~~~-g~~c--------------~CG~~--GclE~~~S~~al~---~~~~-~~ 190 (291)
T PRK05082 132 GVGGGIVLNGKLLTGPGGLAGHIGHTLADPH-GPVC--------------GCGRR--GCVEAIASGRAIA---AAAQ-GW 190 (291)
T ss_pred CcceEEEECCEEeeCCCCccccccceEecCC-CCCC--------------CCCCc--CchhhhcCHHHHH---HHHH-Hh
Confidence 9999999999999999999999999999855 4433 36774 7999999999993 3211 00
Q ss_pred hhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchhh
Q 011283 329 AEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIV 408 (489)
Q Consensus 329 ~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~la 408 (489)
+ +. .+ ...+++. ++..++.|..+++++++++|.+|+
T Consensus 191 ------~----~~-------~~-----------------~~~i~~~----------~~~gd~~a~~~~~~~~~~la~~l~ 226 (291)
T PRK05082 191 ------L----AG-------CD-----------------AKTIFER----------AGQGDEQAQALINRSAQAIARLIA 226 (291)
T ss_pred ------h----cC-------CC-----------------HHHHHHH----------HHcCCHHHHHHHHHHHHHHHHHHH
Confidence 0 00 00 1122222 222347889999999999999999
Q ss_pred HHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhHHHHhh
Q 011283 409 SILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGAALLAS 480 (489)
Q Consensus 409 aii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGAA~~aa 480 (489)
++++.++| + .|+++|++.. .+.|.+.+++.+++.... ..++|+.+ ++++.+|||.++.
T Consensus 227 ~l~~~~dp--------e--~IvlgG~~~~-~~~~~~~i~~~l~~~~~~---~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 227 DLKATLDC--------Q--CVVLGGSVGL-AEGYLELVQAYLAQEPAI---YHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHhCC--------C--EEEEcCcccc-HHHHHHHHHHHHHhcccc---cCCeEEECccCCchhhhhHHHHhc
Confidence 99999998 3 5889999765 567889999999875221 14566655 6889999998753
No 16
>PRK12408 glucokinase; Provisional
Probab=99.94 E-value=2.1e-27 Score=242.96 Aligned_cols=298 Identities=16% Similarity=0.095 Sum_probs=188.1
Q ss_pred CCCcccc-EEEEecCCcceEEEEEEeCCcc---ceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccC
Q 011283 85 TGNERGL-FYALDLGGTNFRVLRVQLGGQE---ERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLP 160 (489)
Q Consensus 85 ~G~E~G~-~LaIDlGGTnlRv~lV~l~g~~---~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~ 160 (489)
++-|++. ||++|+||||+|+++++.++.. ..+... +++ |+.. .+. +.+.+.+++++ .
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~~--~~~--~t~~----~~~----~~~~i~~~~~~-~------ 70 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCASPDAAKPVELLDY--RTY--RCAD----YPS----LAAILADFLAE-C------ 70 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEeccCCccccccccce--eEe--cCCC----ccC----HHHHHHHHHhc-C------
Confidence 4455553 8999999999999999875531 012221 122 2211 122 33334555543 1
Q ss_pred CCceeeeeeEEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcc-eEeeeeeccccccccccccc---
Q 011283 161 QGRQREIGFTFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLD-MRVSALVNDTVGTLAGARYW--- 236 (489)
Q Consensus 161 ~~~~~~lG~tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~-v~v~ai~NDtvatlla~~~~--- 236 (489)
.+...+||++++| +. ++|.+. .+ |++ |. .+.+.|++.+ ++| | .|+||++|++++|+|.
T Consensus 71 -~~~~~igIg~pG~-~~---~~g~v~-~~---nl~-w~--~~~~~l~~~~---~~~~V---~l~ND~naaa~gE~~~~~~ 132 (336)
T PRK12408 71 -APVRRGVIASAGY-AL---DDGRVI-TA---NLP-WT--LSPEQIRAQL---GLQAV---HLVNDFEAVAYAAPYMEGN 132 (336)
T ss_pred -CCcCEEEEEecCC-ce---ECCEEE-ec---CCC-Cc--cCHHHHHHHc---CCCeE---EEeecHHHHHcccccCCHh
Confidence 1346799999998 32 245554 22 222 32 2457777766 784 7 8999999999999876
Q ss_pred ----------cC-ceEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcch
Q 011283 237 ----------DE-DVMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGE 305 (489)
Q Consensus 237 ----------~~-~~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~ 305 (489)
+. .+.+.+++|||+|++++.+++ .+.++.++|.|||.+... +.- +.+ .....|...+.
T Consensus 133 ~~~~~~g~~~~~~~~~~~i~~GTGiGggivi~g~--~g~~~~agE~GH~~~~~~-~~~-------~~~-l~~~~~~~~~~ 201 (336)
T PRK12408 133 QVLQLSGPAQAAAGPALVLGPGTGLGAALWIPNG--GRPVVLPTEAGQAALAAA-SEL-------EMQ-LLQHLLRTRTH 201 (336)
T ss_pred HeeeecCCCCCCCCcEEEEECCCcceEEEEEcCC--CceeeecCccccccCCCC-CHH-------HHH-HHHHHHhhCCc
Confidence 23 578999999999999999887 566666778888877432 100 000 00001333345
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccc
Q 011283 306 QIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKAR 385 (489)
Q Consensus 306 ~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~ 385 (489)
+|+|.++||+.|.++.+..... .+ .. ...++ .+.+++. +
T Consensus 202 ~~~E~~~Sg~gL~~~~~~~~~~---~~--------~~---~~~~~-----------------~~~v~~~----------a 240 (336)
T PRK12408 202 VPIEHVLSGPGLLNLYRALCAL---RG--------AT---PVHAS-----------------PAAITAA----------A 240 (336)
T ss_pred eeHhheecHHHHHHHHHHHHhh---cC--------CC---cccCC-----------------HHHHHHH----------H
Confidence 7999999999997766653210 00 00 00011 1233332 1
Q ss_pred eee-eeehhhhhhcCCccccchhhHHHHhhhccCCcccccceeE-EEecCccccc-hhHHHHH--HHHHHHHhhCccccc
Q 011283 386 KVV-IEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTV-VAMDGGLYEH-YTQYRRY--VHEAVTELLGTEISK 460 (489)
Q Consensus 386 ~~~-~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~-I~i~Gsv~~~-~~~f~~~--i~~~l~~~~~~~~~~ 460 (489)
+.. +..|..+++++++++|.++++++..++| .. |+++||++.. .+.|.+. +++.+++...+....
T Consensus 241 ~~ggD~~A~~~~~~~~~~La~~i~nl~~~ldP----------e~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~ 310 (336)
T PRK12408 241 LAGDDALAHEALQVFCGFLGSVVGDMALAYGA----------RGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALE 310 (336)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhc
Confidence 222 4899999999999999999999999998 24 8899999876 5666664 777776653332233
Q ss_pred ceEEEec--cCCcchhHHHHhhc
Q 011283 461 NVVIEHT--KDGSGIGAALLASA 481 (489)
Q Consensus 461 ~v~i~~a--~Dgs~iGAA~~aa~ 481 (489)
.+.|+.+ .|++++|||.++..
T Consensus 311 ~~~I~~~~~~~agl~GAa~~~~~ 333 (336)
T PRK12408 311 QVPVKLVEHGQLGVLGAASWYLQ 333 (336)
T ss_pred CCCEEEEeCCChHHHHHHHHHHh
Confidence 4555544 58999999966543
No 17
>PRK00292 glk glucokinase; Provisional
Probab=99.93 E-value=5.3e-26 Score=230.93 Aligned_cols=290 Identities=14% Similarity=0.134 Sum_probs=184.5
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHh-hcCccccCCCceeeeee
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEK-EAGKFHLPQGRQREIGF 169 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~-~~~~~~~~~~~~~~lG~ 169 (489)
++|++|+||||+|++++++.+. .++... +++.+. . +.+.+.+.+++++ .+ .+...+||
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~~~--~~~~~~--~~~~~~------~----~~~~~~l~~~l~~~~~-------~~~~gigI 61 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWANG--EIEQIK--TYATAD------Y----PSLEDAIRAYLADEHG-------VQVRSACF 61 (316)
T ss_pred eEEEEEcCccceEEEEEecCCC--ceeeeE--EEecCC------C----CCHHHHHHHHHHhccC-------CCCceEEE
Confidence 5899999999999999997443 233321 233321 1 2244444555543 21 23578999
Q ss_pred EEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcc-eEeeeeeccccccccccccc----------c-
Q 011283 170 TFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLD-MRVSALVNDTVGTLAGARYW----------D- 237 (489)
Q Consensus 170 tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~-v~v~ai~NDtvatlla~~~~----------~- 237 (489)
++|+|++...+... .+.| .. + .+.|++.+ ++| | .|+||+++++++|.+. .
T Consensus 62 g~pG~vd~~~i~~~-n~~w---------~~-~-~~~l~~~~---~~p~v---~l~ND~~aaalgE~~~~~~~~~~~g~~~ 123 (316)
T PRK00292 62 AIAGPVDGDEVRMT-NHHW---------AF-S-IAAMKQEL---GLDHL---LLINDFTAQALAIPRLGEEDLVQIGGGE 123 (316)
T ss_pred EEeCcccCCEEEec-CCCc---------cc-C-HHHHHHHh---CCCeE---EEEecHHHHHcccccCCHhheeEeCCCC
Confidence 99999974221111 1124 22 3 47777777 785 7 7999999999999752 1
Q ss_pred ---CceEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhch
Q 011283 238 ---EDVMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISG 314 (489)
Q Consensus 238 ---~~~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG 314 (489)
.++.+.+++|||+|++++.++ +.+.++.++|.|||.++.. |.. +++.. ...|...+++|+|.++||
T Consensus 124 ~~~~~~~~~v~~GTGiG~giv~~g--~~g~~g~agE~GH~~~~~~-~~~-------~~~~~-~~~c~~~~~gclE~~~Sg 192 (316)
T PRK00292 124 PVPGAPIAVIGPGTGLGVAGLVPV--DGRWIVLPGEGGHVDFAPR-SEE-------EAQIL-QYLRAEFGHVSAERVLSG 192 (316)
T ss_pred CCCCCcEEEEEcCCcceEEEEEec--CCceEEccCCcccccCCCC-ChH-------HHHHH-HHHHHhcCCceeEeeecH
Confidence 368999999999999999987 6777777788999988533 221 00000 001222235799999999
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeee-eehh
Q 011283 315 MYLGEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVI-EVCD 393 (489)
Q Consensus 315 ~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~-~ia~ 393 (489)
+.|.++.+.... ..+ . ++ ..++ ..++++. ++..+ .+|+
T Consensus 193 ~~L~~~~~~~~~---~~~-----~-~~-----~~~~-----------------~~~i~~~----------a~~gdd~~A~ 231 (316)
T PRK00292 193 PGLVNLYRAICK---ADG-----R-EP-----ELLT-----------------PADITER----------ALAGSCPLCR 231 (316)
T ss_pred HhHHHHHHHHHh---hcC-----C-Cc-----ccCC-----------------HHHHHHH----------HHhCCChHHH
Confidence 999665543211 000 0 00 0001 1223333 33344 8999
Q ss_pred hhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCcccc-chhHHHH-HHHHHHHHhh-Cccc--ccceEEEecc
Q 011283 394 TIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYE-HYTQYRR-YVHEAVTELL-GTEI--SKNVVIEHTK 468 (489)
Q Consensus 394 ~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~-~~~~f~~-~i~~~l~~~~-~~~~--~~~v~i~~a~ 468 (489)
.+++++++++|.+++++++.++| + -.|+++||+.. ..+.|.+ .+++.+++.. .+.. ...+.+...+
T Consensus 232 ~~~~~~~~~lg~~i~~l~~~~~P--------~-~~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (316)
T PRK00292 232 RTLSLFCVILGRVAGNLALTLGA--------R-GGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVITHP 302 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--------C-ceEEEeCchHHhHHhhhccHHHHHHHhcCCChhhHHhcCCEEEEcCC
Confidence 99999999999999999999998 2 14778888884 6676666 5566666522 1211 2234456668
Q ss_pred CCcchhHHHHhh
Q 011283 469 DGSGIGAALLAS 480 (489)
Q Consensus 469 Dgs~iGAA~~aa 480 (489)
|++++|||.++.
T Consensus 303 ~agl~GAa~~~~ 314 (316)
T PRK00292 303 QPGLLGAGAYLR 314 (316)
T ss_pred ChHHHHHHHHHh
Confidence 999999988764
No 18
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.92 E-value=1.1e-24 Score=214.92 Aligned_cols=233 Identities=14% Similarity=0.115 Sum_probs=173.1
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeE
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFT 170 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~t 170 (489)
.|++||+|||++|++++++.++ ++.+. +++.|. .+.+++++.+.+.+.++..... ....+|++
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gIgv~ 63 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQ---RIWHK--RVPTPR----EDYPQLLQILRDLTEEADTYCG--------VQGSVGIG 63 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCC---EEEEE--EecCCC----cCHHHHHHHHHHHHHHHHhhcC--------CCceEEEE
Confidence 3799999999999999999874 55433 345442 2466788888888877743221 23479999
Q ss_pred EeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEEEe
Q 011283 171 FSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAVIL 246 (489)
Q Consensus 171 fSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~iglIl 246 (489)
+|+|++. +.|.+ .++ +.++|.+.|+++.|++.+ ++|| .+.||+++++++|.|. +.++.+++++
T Consensus 64 ~pG~vd~---~~g~i-~~~---~~~~w~~~~l~~~l~~~~---~~pV---~leNDanaaAlaE~~~g~~~~~~~~v~i~l 130 (256)
T PRK13311 64 IPGLPNA---DDGTV-FTA---NVPSAMGQPLQADLSRLI---QREV---RIDNDANCFALSEAWDPEFRTYPTVLGLIL 130 (256)
T ss_pred ecCcEEC---CCCEE-Ecc---CCCcccCCChHHHHHHHH---CCCE---EEEchhhHHHHHHHHhcCCCCCCcEEEEEE
Confidence 9999875 34544 343 456677889999999988 8897 8999999999999884 4689999999
Q ss_pred cCCcceeEEeeccccccccCCcCCCCCeee--ecc-------cccccCCCcccccccccccccCCcchhhhhhhhchhhH
Q 011283 247 GTGTNACYVEQMDAIPKLQGNKSPSGRTII--NTE-------WGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYL 317 (489)
Q Consensus 247 GTG~Na~yie~~~~i~~~~g~~~~~g~miI--n~E-------~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yL 317 (489)
|||++++++.+++.+++.++.++|.|||.+ +.+ -|..| .|++ .+|+|.++|+..|
T Consensus 131 gtGiG~giv~~G~l~~G~~g~AGEiGh~~v~~~~~~~~~~~~~~~~c--------------~cG~--~GclE~~~S~~ai 194 (256)
T PRK13311 131 GTGVGGGLIVNGSIVSGRNHITGEFGHFRLPVDALDILGADIPRVPC--------------GCGH--RGCIENYISGRGF 194 (256)
T ss_pred CcCeEEEEEECCEEecCCCCCCccceeEEeccCcccccccCCCCCcC--------------CCCC--ccchhheecHHHH
Confidence 999999999999999999998999999998 321 02112 3566 4799999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhh
Q 011283 318 GEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVK 397 (489)
Q Consensus 318 gei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~ 397 (489)
.+..+. .. . . .++ ..++++. ++..++.|+.+++
T Consensus 195 ~~~~~~----~~------~----~------~~~-----------------~~~l~~~----------~~~gd~~a~~~~~ 227 (256)
T PRK13311 195 EWMYSH----FY------Q----H------TLP-----------------ATDIIAH----------YAAGEPKAVAHVE 227 (256)
T ss_pred HHHHHH----hc------c----C------CCC-----------------HHHHHHH----------HHcCCHHHHHHHH
Confidence 543321 00 0 0 000 1223332 2334589999999
Q ss_pred cCCccccchhhHHHHhhhc
Q 011283 398 RGGRLAGAGIVSILQKIDE 416 (489)
Q Consensus 398 RaA~l~aa~laaii~~~~~ 416 (489)
++++++|.+|+++++.+++
T Consensus 228 ~~~~~la~~i~nl~~~~~~ 246 (256)
T PRK13311 228 RFMDVLAVCLGNLLTMLGS 246 (256)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999997
No 19
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.84 E-value=3.5e-21 Score=212.91 Aligned_cols=290 Identities=14% Similarity=0.134 Sum_probs=176.5
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeee
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGF 169 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~ 169 (489)
|.+|++|+||||+|+++++..|. +... .++|+.. |+.+.+.|.+++++.+. ..+..+||
T Consensus 18 ~~~L~iDIGGT~ir~al~~~~g~---i~~~----~~~~t~~--------~~~~~~~i~~~l~~~~~------~~~~~igi 76 (638)
T PRK14101 18 GPRLLADVGGTNARFALETGPGE---ITQI----RVYPGAD--------YPTLTDAIRKYLKDVKI------GRVNHAAI 76 (638)
T ss_pred CCEEEEEcCchhheeeeecCCCc---ccce----eEEecCC--------CCCHHHHHHHHHHhcCC------CCcceEEE
Confidence 55999999999999999976553 4332 2344321 24455666777664431 23578999
Q ss_pred EEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeecccccccccc--------ccc----c
Q 011283 170 TFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGA--------RYW----D 237 (489)
Q Consensus 170 tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~--------~~~----~ 237 (489)
++|+|++...+. ...+.|. .++ +.|++.+ ++|. +.|+||.+|+++++ .+. +
T Consensus 77 g~pGpVd~~~~~-~~nl~w~----------~~~-~~l~~~~---g~~~--v~l~ND~~aaA~ge~~l~~~e~~~~G~g~~ 139 (638)
T PRK14101 77 AIANPVDGDQVR-MTNHDWS----------FSI-EATRRAL---GFDT--LLVVNDFTALAMALPGLTDAQRVQVGGGTR 139 (638)
T ss_pred EEecCccCCeee-ecCCCcE----------ecH-HHHHHHc---CCCe--EEEEchHHHHHcCCccCCHHHeEEeCCCCC
Confidence 999999853221 1222352 255 6777766 7752 48999999999995 332 3
Q ss_pred CceEEEEEecCCccee---EE-eeccccccccCCcCCCCCeeeecccccccCCCccccccccc-ccccCCcchhhhhhhh
Q 011283 238 EDVMVAVILGTGTNAC---YV-EQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDM-DAASINPGEQIYEKTI 312 (489)
Q Consensus 238 ~~~~iglIlGTG~Na~---yi-e~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~-D~~s~~pg~~~~Ek~~ 312 (489)
.++.+.+++|||||.+ ++ .+++.+. .++|.|||.++.. +.....+ ...|++.|.+|+|.++
T Consensus 140 ~~~~~~~~lGtGTGlG~a~lv~~~g~~~~----~g~E~GH~~~~~~----------~~~e~~~~~~~~~~~g~~~~E~~~ 205 (638)
T PRK14101 140 RQNSVIGLLGPGTGLGVSGLIPADDRWIA----LGSEGGHASFAPQ----------DEREDLVLQYARKKYPHVSFERVC 205 (638)
T ss_pred CCCCcEEEEECCccceeeEEEecCCeeEE----CCCCccccCCCCC----------CHHHHHHHHHHHHhcCcceeeeec
Confidence 4677899987765554 43 5544221 1235566554321 1000000 0013344567999999
Q ss_pred chhhHHHHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeeh
Q 011283 313 SGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVC 392 (489)
Q Consensus 313 SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia 392 (489)
||+.|.++.|..... .+ . + .+..++ ..++++. ++..+.+|
T Consensus 206 Sg~gL~~~~~~~~~~---~~-----~-~----~~~~~~-----------------~~~i~~~----------a~~gd~~A 245 (638)
T PRK14101 206 AGPGMEIIYRALAAR---DK-----K-R----VAANVD-----------------TAEIVER----------AHAGDALA 245 (638)
T ss_pred chhhHHHHHHHHHhh---cC-----C-C----CcCcCC-----------------HHHHHHH----------HHCCCHHH
Confidence 999998777653211 00 0 0 000011 1234443 33345999
Q ss_pred hhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccch-hHHHH-HHHHHHHHhh--Ccc-cccceEEEec
Q 011283 393 DTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHY-TQYRR-YVHEAVTELL--GTE-ISKNVVIEHT 467 (489)
Q Consensus 393 ~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~-~~f~~-~i~~~l~~~~--~~~-~~~~v~i~~a 467 (489)
..+++++++++|.++++++..+++. ..|++|||+..+. +.|.+ .+.+.++..- ... ..-.|.++..
T Consensus 246 ~~~~~~~~~~lg~~~~nl~~~~~~p---------~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~ 316 (638)
T PRK14101 246 LEAVECFCAILGTFAGNLALTLGAL---------GGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITA 316 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC---------CcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeC
Confidence 9999999999999999999999841 3589999998654 44442 4555554321 000 1235777888
Q ss_pred cCCcchhHHHHhh
Q 011283 468 KDGSGIGAALLAS 480 (489)
Q Consensus 468 ~Dgs~iGAA~~aa 480 (489)
++.+++|||..+.
T Consensus 317 ~~~~l~Gaa~~~~ 329 (638)
T PRK14101 317 EYPAFLGVSAILA 329 (638)
T ss_pred CChhHHHHHHHHH
Confidence 9999999976654
No 20
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=99.84 E-value=7.6e-21 Score=193.19 Aligned_cols=291 Identities=13% Similarity=0.099 Sum_probs=169.8
Q ss_pred EEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEe
Q 011283 93 YALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFS 172 (489)
Q Consensus 93 LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfS 172 (489)
|++|+||||+|+++++..+. ++.. .+.++. +.++.+.+.|.+++++.+... .......||+.+
T Consensus 1 l~~DIGGT~i~~glvd~~g~---~l~~----~~~~~~-------~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPG---EISQ----AKTYSG-------LDFPSLEAVVRVYLEEHKVEL---KDPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEecCCC---ceee----eEEEec-------CCCCCHHHHHHHHHHhccccc---CCCcCeEEEEEe
Confidence 68999999999999987553 2321 111111 124555566666665432110 012356899999
Q ss_pred eeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCc-ceEeeeeecccccccccc--------ccc----cCc
Q 011283 173 FPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGL-DMRVSALVNDTVGTLAGA--------RYW----DED 239 (489)
Q Consensus 173 fP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l-~v~v~ai~NDtvatlla~--------~~~----~~~ 239 (489)
+|++...+. ...+.|. .++. .|++.+ ++ || .|+||++|++++| +|. +.+
T Consensus 64 Gpv~~~~v~-~~nl~w~----------~~~~-~l~~~~---g~~~V---~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~ 125 (316)
T TIGR00749 64 CPITGDWVA-MTNHTWA----------FSIA-ELKQNL---GFSHL---EIINDFTAVSYAIPGLKKEDLIQFGGAEPVE 125 (316)
T ss_pred CcccCCEEE-ecCCCCe----------eCHH-HHHHhc---CCCeE---EEEecHHHHHcCCCCCCHHHeEEeCCCCCCC
Confidence 998532111 1122342 3674 777766 77 47 7999999999998 653 456
Q ss_pred eEEEEEecCCcceeE--Ee---eccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhch
Q 011283 240 VMVAVILGTGTNACY--VE---QMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISG 314 (489)
Q Consensus 240 ~~iglIlGTG~Na~y--ie---~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG 314 (489)
+.+.+++|||||.+. +. +++.+ +.++|.|||.+... +.-. . .+...+...| +++|+|.++||
T Consensus 126 ~~~~v~lGtGtG~G~~~vi~~~~g~l~----~~agE~GH~~~~~~-~~~~--~---~~~~~l~~~~---~~g~~E~~~Sg 192 (316)
T TIGR00749 126 GKPIAILGAGTGLGVAHLIHQVDGRWV----VLPGEGGHVDFAPN-SELE--A---IILEYLRAKI---GHVSAERVLSG 192 (316)
T ss_pred CCcEEEEecCCCceeeEEEEcCCCCEE----ECCCCcccccCCCC-CHHH--H---HHHHHHHHhc---CCceeeeeecH
Confidence 789999966666664 66 55543 34568888877421 1000 0 0000000123 35799999999
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCcccccc--ccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeee-ee
Q 011283 315 MYLGEIVRRVLLKMAEEGALFGNSVPEKLS--MPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVI-EV 391 (489)
Q Consensus 315 ~yLgei~R~~l~~~~~~~~lf~~~~~~~l~--~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~-~i 391 (489)
+.|.++.|..... .+. .... ....+ ..+.+++. ++..+ .+
T Consensus 193 ~gl~~~~~~~~~~---~~~-------~~~~~~~~~~~-----------------~~~~I~~a----------a~~Gdd~~ 235 (316)
T TIGR00749 193 PGLVNIYEALVKA---DPE-------RQFNKLPQENL-----------------KPKDISER----------ALAGSCTD 235 (316)
T ss_pred HHHHHHHHHHHhh---cCc-------ccccccccccC-----------------CHHHHHHH----------HHcCCCHH
Confidence 9998777754311 010 0000 00001 12334443 34454 89
Q ss_pred hhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHH-HHHHHHHHh--hCcc-cccceEEEec
Q 011283 392 CDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRR-YVHEAVTEL--LGTE-ISKNVVIEHT 467 (489)
Q Consensus 392 a~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~-~i~~~l~~~--~~~~-~~~~v~i~~a 467 (489)
|..+++++++++|.+++++++.++| +..+++.||.+.+..+.+.+ .+.+.+++. .... ..-.|.++..
T Consensus 236 A~~~~~~~~~~lg~~i~nl~~~ldp--------eggv~v~GG~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~pv~~i~~ 307 (316)
T TIGR00749 236 CRRALSLFCVIYGRFAGNLALNLGT--------RGGVYIAGGIVPRFIEFFKASGFRAAFEDKGRMKEYVHDIPVYVVLH 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC--------CCcEEEECcHHHhHHhhhCchHHHHHHhccCChhHHHhhCCEEEEcC
Confidence 9999999999999999999999998 21234444444454455444 344444321 0000 1124777788
Q ss_pred cCCcchhHH
Q 011283 468 KDGSGIGAA 476 (489)
Q Consensus 468 ~Dgs~iGAA 476 (489)
++.+++|||
T Consensus 308 ~~~~l~G~~ 316 (316)
T TIGR00749 308 DNPGLLGAG 316 (316)
T ss_pred CCccccCCC
Confidence 999999995
No 21
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=99.83 E-value=2.8e-20 Score=173.14 Aligned_cols=175 Identities=23% Similarity=0.336 Sum_probs=141.7
Q ss_pred EEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEee
Q 011283 94 ALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSF 173 (489)
Q Consensus 94 aIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSf 173 (489)
+||+|+|.++++++++.|+ ++.+. ++++| .+.+++++.+.+.+.+++.+.+ .. .+|+++|+
T Consensus 1 gidig~~~i~~~l~d~~g~---ii~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~--------~~-gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGE---IIYSE--SIPTP-----TSPEELLDALAELIERLLADYG--------RS-GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEETTSC---EEEEE--EEEHH-----SSHHHHHHHHHHHHHHHHHHHT--------CE-EEEEEESS
T ss_pred CEEECCCEEEEEEECCCCC---EEEEE--EEECC-----CCHHHHHHHHHHHHHHHHhhcc--------cc-cEEEeccc
Confidence 6999999999999999885 66543 34444 3578999999999999988764 12 89999999
Q ss_pred eccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEEEecCC
Q 011283 174 PVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAVILGTG 249 (489)
Q Consensus 174 P~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~iglIlGTG 249 (489)
|++. +++.++... .++|.+.|+.+.|++.+ ++|| .++||++++++++.+. +.++.+.+.+|||
T Consensus 62 ~v~~---~~g~i~~~~----~~~~~~~~l~~~l~~~~---~~pv---~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G 128 (179)
T PF00480_consen 62 IVDS---EKGRIISSP----NPGWENIPLKEELEERF---GVPV---IIENDANAAALAEYWFGAAKDCDNFLYLYIGTG 128 (179)
T ss_dssp EEET---TTTEEEECS----SGTGTTCEHHHHHHHHH---TSEE---EEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS
T ss_pred cCcC---CCCeEEecC----CCCcccCCHHHHhhccc---ceEE---EEecCCCcceeehhhcCccCCcceEEEEEeecC
Confidence 9986 335555332 15677899999999998 7898 8999999999999873 4679999999999
Q ss_pred cceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhH
Q 011283 250 TNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYL 317 (489)
Q Consensus 250 ~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yL 317 (489)
++++++.+++.+.+.++.+++.|||.++.+ |.-| .|++ ++|+|.++|+++|
T Consensus 129 iG~~ii~~g~i~~G~~~~aGeigh~~~~~~-~~~c--------------~cG~--~GClE~~~S~~Al 179 (179)
T PF00480_consen 129 IGAGIIINGKIYRGSNGFAGEIGHMPVDPN-GEPC--------------YCGN--RGCLETYASGRAL 179 (179)
T ss_dssp EEEEEEETTEEETTTTS-TTGGGGSBSSTT-SSB---------------TTSS--BSBHHHHHSHHHH
T ss_pred CCcceecccccccCCCccccceeeeeccCC-CCcC--------------CCCC--cCcHHHhhChhhC
Confidence 999999999999998888899999999855 4333 3666 4899999999886
No 22
>PTZ00288 glucokinase 1; Provisional
Probab=99.66 E-value=1.1e-15 Score=158.70 Aligned_cols=314 Identities=16% Similarity=0.067 Sum_probs=175.6
Q ss_pred cEEEEecCCcceEEEEEEeC--Cccceeeeccccccccc-chhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeee
Q 011283 91 LFYALDLGGTNFRVLRVQLG--GQEERVQATEFEQVSIP-QELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREI 167 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~--g~~~~i~~~~~~~~~ip-~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~l 167 (489)
++++.|+||||.|+++.+.. +.. .+... .++.+ +. .+..++.+++.+.++.+.+.... ...+...
T Consensus 27 ~~~~~DiGgt~~R~~~~~~~~~~~~-~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a 94 (405)
T PTZ00288 27 IFVGCDVGGTNARVGFAREVQHDDS-GVHII---YVRFNVTK---TDIRELLEFFDEVLQKLKKNLSF-----IQRVAAG 94 (405)
T ss_pred eEEEEEecCCceEEEEEeccCCCCC-ceeEE---EEeccccc---ccHHHHHHHHHHHHHHHHhcCcc-----ccCcCeE
Confidence 68999999999999999972 221 12221 23444 22 34556777777766666543210 0233446
Q ss_pred eeEEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeecccccccccccc------------
Q 011283 168 GFTFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARY------------ 235 (489)
Q Consensus 168 G~tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~------------ 235 (489)
.|.+++|+....+ .|...+|.....+++ .+. .+ | +++ -+.++||=.|..++-..
T Consensus 95 ~iAvAGPV~~~~~-~~~~~~~~~~~~lTN---lpw--~i---~---~~~--~~~liNDfeA~aygi~~l~~~~~~~~~f~ 160 (405)
T PTZ00288 95 AISVPGPVTGGQL-AGPFNNLKGIARLTD---YPV--EL---F---PPG--RSALLNDLEAGAYGVLAVSNAGRLSEYFK 160 (405)
T ss_pred EEEEeCceeCCEe-eccccccccccccCC---CCc--hh---c---CCC--eEEEEEhHHHHhCcccccChhhccccccc
Confidence 7888999853211 234467764444443 221 11 2 432 24799998888776432
Q ss_pred --------------------ccCceEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCC-Cccccccc
Q 011283 236 --------------------WDEDVMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKG-LPLTEFDR 294 (489)
Q Consensus 236 --------------------~~~~~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~-lp~t~~D~ 294 (489)
.+..+.+.+.+|||+|+|++.+.+.+.++...++|.||+.++.--+.-|.+ ..+ |..
T Consensus 161 ~~~~~~~~~~l~~~~~~g~~~~~~~~~Vlg~GTGLG~alli~~~l~~G~~~~agEgGHv~~~~~~~~~~~~g~~l--~~~ 238 (405)
T PTZ00288 161 VMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSSLIHYVGVSDQYIVIPLECGHLSISWPANEDSDYVQAL--AGY 238 (405)
T ss_pred ccccccceeeecCCCCCcccCCCCCEEEEEeccceeEEEEECCeecCCcccccccccceeeccCCCCccchhHHH--HHH
Confidence 123456899999999999999988777777777888888874211110100 000 000
Q ss_pred cccccc---C--CcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhh
Q 011283 295 DMDAAS---I--NPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVG 369 (489)
Q Consensus 295 ~~D~~s---~--~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~ 369 (489)
+.... + +...-|+|.++||+.|.++.+... ... .+. .+.. ...
T Consensus 239 -l~~~~~~~g~~~~~~vs~E~v~SG~GL~~ly~~l~----~~~------~~~-------~~~~--------------~~a 286 (405)
T PTZ00288 239 -LASKALSKGIDSTVYPIYEDIVSGRGLEFNYAYEK----RGN------KPS-------APLK--------------EAA 286 (405)
T ss_pred -HHhhhccccccccCceeEeEEecHHHHHHHHHHHh----ccC------CCc-------cCcC--------------CHH
Confidence 00000 0 000238999999999977666421 100 000 0000 011
Q ss_pred hhhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccc-hhHHHH----
Q 011283 370 STLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEH-YTQYRR---- 444 (489)
Q Consensus 370 ~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~-~~~f~~---- 444 (489)
++.+. . ....+..|..+++++++++|.++.+++..++| + .|.++||+..+ .+.|.+
T Consensus 287 ~ia~~-----A----~~~gD~~A~~al~~f~~~LG~~~~nlal~l~P--------~--~VvIgGGi~~~~~~~l~~~~~~ 347 (405)
T PTZ00288 287 EVAKL-----A----KYGSDVAAVKAMKRHYKYLMRLAAEISMQFLP--------L--TVVLMGDNIVYNSFFFDNPENV 347 (405)
T ss_pred HHHHH-----H----HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------C--EEEEECccHHhhHHHHhccchH
Confidence 22221 0 00124789999999999999999999999998 3 26666655444 343331
Q ss_pred -HHHHHHHHhh-C-cccccc--eEE-EeccCCcchhHHHHhhccc
Q 011283 445 -YVHEAVTELL-G-TEISKN--VVI-EHTKDGSGIGAALLASANS 483 (489)
Q Consensus 445 -~i~~~l~~~~-~-~~~~~~--v~i-~~a~Dgs~iGAA~~aa~~~ 483 (489)
.++......- + .+..+. |.+ +...+-+++|||..+....
T Consensus 348 ~f~~~f~~~~k~~r~~~l~~ipv~~qv~~~~~gL~Gaa~~a~~~~ 392 (405)
T PTZ00288 348 KQLQARITEHKMERLKFLSRTTFLRQKKSVNLNLLGCLQFGSQLS 392 (405)
T ss_pred HHHHHHHhcCccChHHHHhcCceEEEEeCCCccHHHHHHHHHHhh
Confidence 2222211000 0 111122 333 5568999999998887543
No 23
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=8.4e-10 Score=107.10 Aligned_cols=309 Identities=18% Similarity=0.255 Sum_probs=184.9
Q ss_pred cccEEEEecCCcceEEEEEEeCCccceeeecc----cccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCce
Q 011283 89 RGLFYALDLGGTNFRVLRVQLGGQEERVQATE----FEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQ 164 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~----~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~ 164 (489)
.+.|.+||=|+|--|+.+|+..++ +..+. ...|-++ .+..-+.|++.|.+...+.+.+. ....
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~---~~~~a~~~~Tnh~~ig-------~~~~~~rie~~i~~A~~k~g~d~---~~~l 68 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGT---ILGRAVGGGTNHWLIG-------STTCASRIEDMIREAKEKAGWDK---KGPL 68 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCC---EeeEeeccccccccCC-------chHHHHHHHHHHHHHHhhcCCCc---cCcc
Confidence 468999999999999999997664 33221 0123333 33556777777777777766432 1235
Q ss_pred eeeeeEEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccCceEEEE
Q 011283 165 REIGFTFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDEDVMVAV 244 (489)
Q Consensus 165 ~~lG~tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~~~igl 244 (489)
..+|+++|+. +|.. .+.++++.|++.+.. + ++=.+|.||+.+++.+. +.+...=|.|
T Consensus 69 r~lgL~lSg~-d~e~------------------~~~~lv~~~R~~fps--~-ae~~~v~sDa~~sl~a~-t~g~~~GiVL 125 (336)
T KOG1794|consen 69 RSLGLGLSGT-DQED------------------KNRKLVTEFRDKFPS--V-AENFYVTSDADGSLAAA-TPGGEGGIVL 125 (336)
T ss_pred ceeeeecccC-Cchh------------------HHHHHHHHHHHhccc--h-hheeeeehhHHHHHhhc-CCCCCCcEEE
Confidence 7899999887 6522 134667777775531 1 12248999999999885 5556677899
Q ss_pred EecCCcceeEEeeccccccccCCcCCCCCeeeecccc-cc-cCCCcccccccccccccCCcchhhhhhhhchhhHHHHHH
Q 011283 245 ILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWG-AF-SKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVR 322 (489)
Q Consensus 245 IlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G-~f-~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R 322 (489)
|-|||+|+-.+.+..... .++..|||+=+ || .| +. +|-+-..+|+.-+ ||.|. --+..+..
T Consensus 126 iaGTgs~crl~~~DGs~~----~~ggwg~~iGd--~GSaywia---~~Avq~vfda~dg------~e~~~--~~i~~v~~ 188 (336)
T KOG1794|consen 126 IAGTGSNCRLVNPDGSEK----GAGGWGHMIGD--GGSAYWIA---RQAVQMVFDAEDG------FENMM--DKIKDVKQ 188 (336)
T ss_pred EecCCceeEEECCCCCcc----CCCCCCCccCC--Ccchhhhh---hhhhhheeehhcC------ccccc--chHHHHHH
Confidence 999999987776544322 23456778764 44 44 32 2222222332211 22221 11111122
Q ss_pred HHHHHHhhhccccCCCccccccccccccCcccccccccC-chhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCc
Q 011283 323 RVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDY-SEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGR 401 (489)
Q Consensus 323 ~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~-~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~ 401 (489)
.++.++ . +++++..- ...-++- -+.+......+. +.+++++++++.|+++|+.
T Consensus 189 tif~~~-------~--l~d~l~ml--------~~~Ys~f~k~riA~f~~kla---------~~ae~Gd~~~~~ifr~Ag~ 242 (336)
T KOG1794|consen 189 TIFKHF-------N--LRDRLQML--------EHLYSDFDKHRIALFTEKLA---------EHAEIGDPLSAEIFRNAGE 242 (336)
T ss_pred HHHHHc-------C--CCCHHHHH--------HHHHhcchHHHHHHHHHHHH---------hhhhccCHHHHHHHHHHHH
Confidence 222221 1 12111100 0000000 000111111121 2356677999999999999
Q ss_pred cccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhc
Q 011283 402 LAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASA 481 (489)
Q Consensus 402 l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~ 481 (489)
.+|--+.|++..+.|.... ....-|+.-|||+.+++.+.+-....+... ..-.++++..-.+.|.+|||++||-
T Consensus 243 ~Lg~~V~aVl~~l~~~~k~---g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~---~~f~~~~l~~~k~ssAvgAA~laa~ 316 (336)
T KOG1794|consen 243 TLGRHVVAVLPQLPPTLKK---GKTLPIVCVGGVFDSWDLLQEGFLDSLSDT---RGFERVELYRPKESSAVGAAILAAS 316 (336)
T ss_pred HHHHHHHHHHhhcCchhcc---cCcceEEEEcchhhHHHHHHHHHHHHhhcc---cCccceEEEeecccchHHHHHHhhh
Confidence 9999999999999874321 012348999999999998877777666552 1224678888889999999999985
Q ss_pred c
Q 011283 482 N 482 (489)
Q Consensus 482 ~ 482 (489)
.
T Consensus 317 ~ 317 (336)
T KOG1794|consen 317 L 317 (336)
T ss_pred h
Confidence 4
No 24
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=99.15 E-value=7.3e-11 Score=119.58 Aligned_cols=292 Identities=18% Similarity=0.182 Sum_probs=158.1
Q ss_pred EEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEe
Q 011283 93 YALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFS 172 (489)
Q Consensus 93 LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfS 172 (489)
|+-|+||||.|+++++..+...++.... +|+ . .+...|.+.|.+.+++.- .+. ..+....|++.
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~~--~~~--~----~~~~s~~~~l~~~l~~~~--~~~------~~p~~~~iavA 64 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDIR--RYP--S----ADFPSFEDALADYLAELD--AGG------PEPDSACIAVA 64 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEEE--EEE--G----CCCCHHHHHHHHHHHHTC--HHH------TCEEEEEEEES
T ss_pred CeEEeCcccEEEEEEEcCCCCccccccE--EEe--c----CCcCCHHHHHHHHHHhcc--cCC------CccceEEEEEe
Confidence 6789999999999999866431222221 222 1 223345555555444331 110 24566899999
Q ss_pred eeccccccccceee--eeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc--------------
Q 011283 173 FPVKQTSIDSGVLI--KWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW-------------- 236 (489)
Q Consensus 173 fP~~q~~i~~g~li--~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~-------------- 236 (489)
+|+.. ++..+. .|+ + + .+.|++.| +++ -+.++||=.|..++--..
T Consensus 65 GPV~~---~~~~lTN~~W~----i------~-~~~l~~~l---g~~--~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~ 125 (316)
T PF02685_consen 65 GPVRD---GKVRLTNLPWT----I------D-ADELAQRL---GIP--RVRLINDFEAQAYGLPALDPEDLVTLQPGEPD 125 (316)
T ss_dssp S-EET---TCEE-SSSCCE----E------E-HHHCHCCC---T-T--CEEEEEHHHHHHHHHHHHHHCCECCHCCEESS
T ss_pred cCccC---CEEEecCCCcc----c------c-HHHHHHHh---CCc--eEEEEcccchheeccCCCCHHHeeeccCCCCC
Confidence 99974 233333 453 2 2 23333333 564 247999998887763321
Q ss_pred cCceEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCccccccccccc-ccCCcchhhhhhhhchh
Q 011283 237 DEDVMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDA-ASINPGEQIYEKTISGM 315 (489)
Q Consensus 237 ~~~~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~-~s~~pg~~~~Ek~~SG~ 315 (489)
.....+-+=.|||.|.|++.+.. .+..++-+|.||-. .-|+++.+..+=. -...-+.=.+|..+||+
T Consensus 126 ~~~~~~Vig~GTGLG~a~l~~~~-----------~~~~v~~sEgGH~~-fap~~~~e~~l~~~l~~~~~~vs~E~vlSG~ 193 (316)
T PF02685_consen 126 PGGPRAVIGPGTGLGVALLVPDG-----------DGYYVLPSEGGHVD-FAPRTDEEAELLRFLRRRYGRVSVERVLSGR 193 (316)
T ss_dssp TTS-EEEEEESSSEEEEEEEEET-----------TEEEEEEE-GGGSB----SSHHHHHHHHHHHHHCTS-BHHHCSSHH
T ss_pred CCCcEEEEEcCCCcEEEEEEecC-----------CceEeCCCcccccc-CCCCCHHHHHHHHHHHHhcCCceeEeecchh
Confidence 23455666789999999999743 24568999999872 2355554433211 00011233789999999
Q ss_pred hHHHHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhh
Q 011283 316 YLGEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTI 395 (489)
Q Consensus 316 yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V 395 (489)
.|..+.+-.. ... + .++.. . ...+|.+.- .+--+.+|...
T Consensus 194 GL~~ly~~l~----~~~----~-~~~~~-----~-----------------~~~~I~~~A---------~~~~d~~a~~a 233 (316)
T PF02685_consen 194 GLENLYRFLA----GER----G-AEPPL-----L-----------------SAAEISAAA---------LEGGDPLAREA 233 (316)
T ss_dssp HHHHHHHHHH----CCT----T---S--------------------------HHHHHHHH---------HCT--HHHHHH
T ss_pred hHHHHHHHHH----hcc----C-CCCCC-----C-----------------CHHHHHHHH---------HcCCCHHHHHH
Confidence 9977665322 110 0 00000 0 112233220 01124899999
Q ss_pred hhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHH--HHHHHHHHh-hCccc--ccceEEEeccCC
Q 011283 396 VKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRR--YVHEAVTEL-LGTEI--SKNVVIEHTKDG 470 (489)
Q Consensus 396 ~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~--~i~~~l~~~-~~~~~--~~~v~i~~a~Dg 470 (489)
++...+++|.....+.-.+.+. --|=+.||+..+...+.+ ...+.+... -..+. .-.|.++..++.
T Consensus 234 l~~f~~~lg~~agdlaL~~~a~---------gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~~ 304 (316)
T PF02685_consen 234 LDLFARILGRVAGDLALTFLAR---------GGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDPDA 304 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-T---------CEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S-H
T ss_pred HHHHHHHHHHHHHHHHHHhCCC---------eeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCCCH
Confidence 9999999999999998888772 237789999887765544 122222111 00000 124667778999
Q ss_pred cchhHHHHhh
Q 011283 471 SGIGAALLAS 480 (489)
Q Consensus 471 s~iGAA~~aa 480 (489)
+++|||..+.
T Consensus 305 gL~Gaa~~a~ 314 (316)
T PF02685_consen 305 GLLGAAAYAR 314 (316)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 25
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=99.15 E-value=2e-10 Score=114.28 Aligned_cols=271 Identities=20% Similarity=0.208 Sum_probs=155.1
Q ss_pred EEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEe
Q 011283 93 YALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFS 172 (489)
Q Consensus 93 LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfS 172 (489)
|+||.|||+.|+.+++.+|+ ++.+. ..-|......+.++..+.|.+.+.+++.+.+... .+...+.++.+
T Consensus 1 lGIDgGgTkt~~vl~d~~g~---il~~~---~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~----~~i~~~~~g~a 70 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN---ILGRG---KGGGANYNSVGFEEAMENIKEAIEEALSQAGLSP----DDIAAICIGAA 70 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE---EEEEE---EES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTST----TCCCEEEEEEE
T ss_pred CEEeeChheeeeEEEeCCCC---EEEEE---EeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCc----cccceeeeeEe
Confidence 79999999999999998774 55432 2233444333456778888888888888766431 22233434443
Q ss_pred eeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccCceEEEEEecCCcce
Q 011283 173 FPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNA 252 (489)
Q Consensus 173 fP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na 252 (489)
+--... +..+...+.+.. ++ .+.||+..++.+..- ..-|-+|-|||.++
T Consensus 71 G~~~~~----------------------~~~~~~~~~~~~---~v---~~~~Da~~al~~~~~---~~giv~I~GTGS~~ 119 (271)
T PF01869_consen 71 GYGRAG----------------------DEQEFQEEIVRS---EV---IVVNDAAIALYGATA---EDGIVVIAGTGSIA 119 (271)
T ss_dssp EEEETT----------------------TTTHHHHHHHHH---EE---EEEEHHHHHHHHHST---SSEEEEEESSSEEE
T ss_pred eecCcc----------------------cccchhhcceEE---EE---EEEHHHHHHhCCCCC---CcEEEEEcCCCceE
Confidence 332110 000111111211 44 799999877666433 47789999999998
Q ss_pred eEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhc
Q 011283 253 CYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEG 332 (489)
Q Consensus 253 ~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~ 332 (489)
..+.+ .|++.-...||++- +. --||.++ .|++|....++-
T Consensus 120 ~~~~~-------------~g~~~r~gG~G~~~----------------gD--------~GSg~~i---g~~~L~~~~~~~ 159 (271)
T PF01869_consen 120 YGRDR-------------DGRVIRFGGWGHCL----------------GD--------EGSGYWI---GRRALRAVLREL 159 (271)
T ss_dssp EEEET-------------TSEEEEEEESCTTT----------------TT--------TTSHHHH---HHHHHHHHHHHH
T ss_pred EEEEc-------------CCcEEEeCCCCCCc----------------CC--------CCcHHHH---HHHHHhHHHHHh
Confidence 88662 23455556778761 11 1255566 344444333321
Q ss_pred cccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHH
Q 011283 333 ALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQ 412 (489)
Q Consensus 333 ~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~ 412 (489)
.+..++....+ ......++.+ +..++.. ++..+..|..|++++++.++.-+.+++.
T Consensus 160 ---d~~~~~~~~~~-~~~~~~~A~f----------a~~v~~~----------a~~gd~~a~~Il~~a~~~la~~i~~~~~ 215 (271)
T PF01869_consen 160 ---DGRAEPTPYAK-PASNARIAVF----------APTVFEA----------AQQGDEVARDILAEAADELAELIKAVLK 215 (271)
T ss_dssp ---TTSSTTSHHHH-TT-HHHHHCT----------HHHHHHH----------HHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cCccccCcccC-CCChhheehh----------hHHHHHH----------HHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111000 0000111111 1122221 2334589999999999999999999998
Q ss_pred hhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHh
Q 011283 413 KIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLA 479 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~a 479 (489)
+.+... ..|++-|||+++.+ +.+.+++.|++.+... .-..+......+.+|||++|
T Consensus 216 ~~~~~~--------~~v~l~GGv~~~~~-~~~~l~~~l~~~~~~~--~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 216 RLGPEK--------EPVVLSGGVFKNSP-LVKALRDALKEKLPKV--PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp TCTCCC--------CSEEEESGGGGCHH-HHHHHGGGS-HHHHCC--TCECECCGSSHHHHHHHHHH
T ss_pred hcCCCC--------CeEEEECCccCchH-HHHHHHHHHHHhcCCC--ceEECCCCCccHHHHHHHhC
Confidence 887632 12899999998866 4455666666554331 12345566788899999986
No 26
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=99.13 E-value=2.2e-09 Score=110.42 Aligned_cols=271 Identities=12% Similarity=0.077 Sum_probs=153.4
Q ss_pred EEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHH---HhhhhHHHhhcCccccCCCceeeee
Q 011283 92 FYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIA---TGLAKFAEKEAGKFHLPQGRQREIG 168 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia---~~i~~~~~~~~~~~~~~~~~~~~lG 168 (489)
.|+|..|||++|+++++..+. +..+.. ...++ .+ +..+...+++. +.|.+++++++... .+...+
T Consensus 2 il~in~Gsts~k~alf~~~~~---~~~~~~-~~~~~-~~--~~~~~~~~q~~~r~~~i~~~l~~~~~~~----~~i~av- 69 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERP---LFEETL-RHSVE-EL--GRFKNVIDQFEFRKQVILQFLEEHGISI----SKLDAV- 69 (351)
T ss_pred EEEEecCchhheEEEEeCCCc---eeeeee-cCCHH-Hh--cccccHHHHHHHHHHHHHHHHHHcCCCc----ccccEE-
Confidence 689999999999999987653 443221 11112 22 34556778888 88888888765321 223334
Q ss_pred eEEeeeccccccccce-ee-----e-eccceeeecCCCchHHHHHHHHHH-hcCcceEeeeeecc---------cccccc
Q 011283 169 FTFSFPVKQTSIDSGV-LI-----K-WTKGFSVSGTAGKDVVACLNEAME-RQGLDMRVSALVND---------TVGTLA 231 (489)
Q Consensus 169 ~tfSfP~~q~~i~~g~-li-----~-wtKgf~~~~~~G~dv~~lL~~al~-~~~l~v~v~ai~ND---------tvatll 231 (489)
..-++|++.. .-|. ++ . -......... .++..++-..+. ..++|. ++.|| +..+.+
T Consensus 70 ~~RgG~~~~v--~Gg~~~v~~~~~~~l~~~~~~~~~--hn~~~~~~~~~~~~~~~p~---~vfDt~fh~~~~~~a~~~al 142 (351)
T TIGR02707 70 VGRGGLLKPI--PGGTYLVNEAMLEDLKSGKRGEHA--SNLGAIIANELADELNIPA---YIVDPVVVDEMEDVARISGL 142 (351)
T ss_pred EECCCCCcee--cceeEEECHHHHHHHHhcCCCCCC--CCHHHHHHHHHHHHcCCCE---EEcCChhhhcChHHHHHhcc
Confidence 3344454431 1111 00 0 0000000000 122222222222 237776 58888 777777
Q ss_pred cccc----------------------ccCc--eEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCC
Q 011283 232 GARY----------------------WDED--VMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGL 287 (489)
Q Consensus 232 a~~~----------------------~~~~--~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~l 287 (489)
.+.+ ++.+ +.|.+.||||+++|.+.+++.+.+..+.++|.+.|. +-+|+.
T Consensus 143 pe~~RrygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGig~~ai~~Gk~vdgs~G~agEg~~~~--tr~G~i---- 216 (351)
T TIGR02707 143 PEIERKSIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGISVAAHRKGRVIDVNNALDGEGPFSP--ERSGTL---- 216 (351)
T ss_pred chhhhhhchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCceeeeEECCEEEEcCCCCCCcCCccc--CccCCC----
Confidence 6441 1223 899999999999999999998888777666555553 223332
Q ss_pred cccccccccccccCCcchhhhh---hhhchhhHHHHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchh
Q 011283 288 PLTEFDRDMDAASINPGEQIYE---KTISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSED 364 (489)
Q Consensus 288 p~t~~D~~~D~~s~~pg~~~~E---k~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~ 364 (489)
+....... ..+++ ..|.| .+.++..|..+ . + +.
T Consensus 217 d~~~~~~~--~~~~~--~s~~el~~~l~~~sGl~~~--------------~-g----------s~--------------- 252 (351)
T TIGR02707 217 PLGDLVDL--CYSGK--YTKEEMKKKIVGNGGLVAY--------------L-G----------TN--------------- 252 (351)
T ss_pred CchhHHHH--HhcCC--CCHHHHHHHHHhccCcccc--------------c-C----------CC---------------
Confidence 10000000 01222 23333 44444444100 0 0 00
Q ss_pred HhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHHhh--hccCCcccccceeEEEecCccccchhHH
Q 011283 365 LQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKI--DEDSNGAIFGKRTVVAMDGGLYEHYTQY 442 (489)
Q Consensus 365 ~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~--~~~~~~~~~~~~~~I~i~Gsv~~~~~~f 442 (489)
..+++++. ++..++.|+.+++..++.++.+|++++..+ +| ..|+++||+.+. +.|
T Consensus 253 --d~reI~~~----------a~~GD~~A~~a~d~~~~~la~~Ia~l~~~l~g~p----------D~IV~gGGI~e~-~~l 309 (351)
T TIGR02707 253 --DAREVEKR----------IEAGDEKAKLILDAMAYQIAKEIGKMAVVLKGKV----------DAIVLTGGLAYS-KYF 309 (351)
T ss_pred --CHHHHHHH----------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----------CEEEEcchhhcC-HHH
Confidence 12233332 223458899999999999999999999999 44 369999999975 667
Q ss_pred HHHHHHHHHHhh
Q 011283 443 RRYVHEAVTELL 454 (489)
Q Consensus 443 ~~~i~~~l~~~~ 454 (489)
++.+.+.++.+.
T Consensus 310 ~~~I~~~l~~~a 321 (351)
T TIGR02707 310 VSEIIKRVSFIA 321 (351)
T ss_pred HHHHHHHHHhhC
Confidence 899988887753
No 27
>PRK03011 butyrate kinase; Provisional
Probab=99.01 E-value=8.4e-09 Score=106.29 Aligned_cols=294 Identities=15% Similarity=0.176 Sum_probs=162.2
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhc-cChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeee
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMC-GTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGF 169 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~-~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~ 169 (489)
+.|+|.-|.|..|+++.+-.. .+..+.. .++. +++.. .+..+-+++=.+.|.+++++++... .+...+ .
T Consensus 3 ~il~inpgststk~a~~~~~~---~~~~~~~-~h~~-~~~~~~~~~~~q~~~r~~~i~~~l~~~g~~~----~~l~av-~ 72 (358)
T PRK03011 3 RILVINPGSTSTKIAVFEDEK---PIFEETL-RHSA-EELEKFKTIIDQYEFRKQAILDFLKEHGIDL----SELDAV-V 72 (358)
T ss_pred EEEEEcCCCchheEEEEcCCc---eeeeecc-ccCH-HHHhcCCCccchHHHHHHHHHHHHHHcCCCh----hcceEE-E
Confidence 579999999999999997432 2333221 2221 22221 1223445666678888888776432 222333 2
Q ss_pred EEeeecccccccccee-------eeeccceeeecCCCchHHHHHHHHHHh-cCcceEeeeeecc----------------
Q 011283 170 TFSFPVKQTSIDSGVL-------IKWTKGFSVSGTAGKDVVACLNEAMER-QGLDMRVSALVND---------------- 225 (489)
Q Consensus 170 tfSfP~~q~~i~~g~l-------i~wtKgf~~~~~~G~dv~~lL~~al~~-~~l~v~v~ai~ND---------------- 225 (489)
.=++.++. +..|+. -.-.+.. +...=.++..++...+.+ .++|+ +|.|+
T Consensus 73 ~RgG~~~~--v~gG~~~v~~~~~~~l~~~~--~~~~~~nl~~~~a~~~~~~~~~p~---~v~D~~~~~~~~~~a~~~~lp 145 (358)
T PRK03011 73 GRGGLLKP--IPGGTYRVNEAMLEDLKNGK--YGEHASNLGAIIAYEIAKELGIPA---FIVDPVVVDEMEPVARISGLP 145 (358)
T ss_pred EcCCCCcc--cCCCCEEcCHHHHHHHHhcC--CCCCCCCHHHHHHHHHHHhcCCCE---EEECCcccccCCHHHHHcCCC
Confidence 22222221 112221 0000000 000112344444444433 47785 78888
Q ss_pred ----------cccccccccc---c----cCceEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCc
Q 011283 226 ----------TVGTLAGARY---W----DEDVMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLP 288 (489)
Q Consensus 226 ----------tvatlla~~~---~----~~~~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp 288 (489)
.+-.++++.| . ...+.|.+.+|||+++|.+.+++.+.+..+.++|...| .+-+|+. |
T Consensus 146 ~i~R~~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGig~gai~~Gk~idgs~g~agEG~~~--~~R~G~l----~ 219 (358)
T PRK03011 146 EIERKSIFHALNQKAVARRVAKELGKKYEELNLIVAHLGGGISVGAHRKGRVIDVNNALDGEGPFS--PERAGGL----P 219 (358)
T ss_pred CcceeecchHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCceeeEEECCEEEecCCccCCCCCcc--cCcccCc----C
Confidence 5555555555 1 24489999999999999999999887766544321111 1112322 1
Q ss_pred ccccccccccccCCcchhhhhhhhchhhH-HHHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhh
Q 011283 289 LTEFDRDMDAASINPGEQIYEKTISGMYL-GEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQA 367 (489)
Q Consensus 289 ~t~~D~~~D~~s~~pg~~~~Ek~~SG~yL-gei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~ 367 (489)
|+ ...+...+|.|= -++.+ .+...+.+..- . .+ . .
T Consensus 220 --------------~~-~~~~~~~~g~~s~~~l~~----~l~~~~Gl~~~-----~------gs-----------~---d 255 (358)
T PRK03011 220 --------------VG-DLVELCFSGKYTKEELKK----KLVGKGGLVAY-----L------GT-----------N---D 255 (358)
T ss_pred --------------cH-HHHHHHhcCCCCHHHHHH----HHHhccCcccc-----c------CC-----------C---C
Confidence 10 122223333331 11122 22222111110 0 00 0 1
Q ss_pred hhhhhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHHhh--hccCCcccccceeEEEecCccccchhHHHHH
Q 011283 368 VGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKI--DEDSNGAIFGKRTVVAMDGGLYEHYTQYRRY 445 (489)
Q Consensus 368 ~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~--~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~ 445 (489)
.+++++. ++..++.|+.++++.++.+|.+|++++..+ +| ..|+++||+.+ .+.|++.
T Consensus 256 ~reV~~~----------a~~GD~~A~~ald~~~~~lak~I~~l~~~L~gdp----------D~IVlgGGI~~-~~~l~~~ 314 (358)
T PRK03011 256 AREVEKR----------IEEGDEKAKLVYEAMAYQIAKEIGAMAAVLKGKV----------DAIVLTGGLAY-SKRLVER 314 (358)
T ss_pred HHHHHHH----------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----------CEEEEeCcccc-CHHHHHH
Confidence 2333332 223458899999999999999999999999 45 36999999998 7899999
Q ss_pred HHHHHHHhhCcccccceEEEecc---CCcchhHHHH
Q 011283 446 VHEAVTELLGTEISKNVVIEHTK---DGSGIGAALL 478 (489)
Q Consensus 446 i~~~l~~~~~~~~~~~v~i~~a~---Dgs~iGAA~~ 478 (489)
+++.++.+ ..+.+.+++ ++...||+-+
T Consensus 315 I~~~l~~~------~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 315 IKERVSFI------APVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred HHHHHHhh------CCeEEEeCCCHHHHHHHHHHHH
Confidence 99988865 247788773 5677777644
No 28
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=98.86 E-value=6.8e-09 Score=86.91 Aligned_cols=97 Identities=16% Similarity=0.213 Sum_probs=66.0
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeE
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFT 170 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~t 170 (489)
++||||+|||++++++++..|. +... ..+++. .+.+++++.+.+.+.++ . ...+|++
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~---~~~~----~~~~~~---~~~~~~~~~l~~~i~~~----~---------~~~i~Ig 58 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK---LADP----LEVIPR---TNKEADAARLKKLIKKY----Q---------PDLIVIG 58 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC---EecC----EEEEEe---cCcchHHHHHHHHHHHh----C---------CCEEEEe
Confidence 4899999999999999987664 4432 233332 12446666666666542 1 3468888
Q ss_pred Eeeeccccccccceee-eeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccc
Q 011283 171 FSFPVKQTSIDSGVLI-KWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAG 232 (489)
Q Consensus 171 fSfP~~q~~i~~g~li-~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla 232 (489)
+|+|++ |.+. .| . .++.+.|++.+ ++|| .++||++++..+
T Consensus 59 ~pg~v~------g~~~~~~---------~-~~l~~~l~~~~---~~pv---~~~nDa~st~~a 99 (99)
T smart00732 59 LPLNMN------GTASRET---------E-EAFAELLKERF---NLPV---VLVDERLATVYA 99 (99)
T ss_pred CCcCCC------CCcCHHH---------H-HHHHHHHHHhh---CCcE---EEEeCCcccccC
Confidence 888874 2221 24 2 48888888866 7897 799999998753
No 29
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=1.1e-06 Score=86.96 Aligned_cols=277 Identities=20% Similarity=0.167 Sum_probs=153.8
Q ss_pred cccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeee
Q 011283 89 RGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIG 168 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG 168 (489)
+-+||+||-|||..|+.+-+..|+ ++-+- ..=|.++.+.+.++-+..|.+.|.+.+++.+..+ -.
T Consensus 4 ~~~~lGVDGGGTkt~a~l~~~~g~---vlg~g---~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~---------~~ 68 (301)
T COG2971 4 MPYFLGVDGGGTKTRAVLADEDGN---VLGRG---KSGPANIQLVGKEEAVRNIKDAIREALDEAGLKP---------DE 68 (301)
T ss_pred ccEEEEEccCCcceEEEEEcCCCc---EEEEe---ccCCceecccchHHHHHHHHHHHHHHHHhcCCCH---------HH
Confidence 457999999999999999997664 66543 2336666665558889999999999998776432 12
Q ss_pred eEEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceE-eeeeeccccccccccccccCceEEEEEec
Q 011283 169 FTFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMR-VSALVNDTVGTLAGARYWDEDVMVAVILG 247 (489)
Q Consensus 169 ~tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~-v~ai~NDtvatlla~~~~~~~~~iglIlG 247 (489)
|.++.+.-- + ...++ ..-.+.+ + +.+|.- -+.|+||+..++.+.-.. +.=+-+|+|
T Consensus 69 i~~~~agla-----~--ag~~~---------~~~~~~~-~----~~l~~a~~v~v~~Dg~iAl~ga~~~--~~Gii~i~G 125 (301)
T COG2971 69 IAAIVAGLA-----L--AGANV---------EEAREEL-E----RLLPFAGKVDVENDGLIALRGALGD--DDGIIVIAG 125 (301)
T ss_pred hCceeeeee-----c--cCcch---------hHHHHHH-H----HhcCccceEEEecChHHHHhhccCC--CCCEEEEec
Confidence 222222110 0 00000 0111222 1 134432 457999999999987443 333455666
Q ss_pred CCcceeEEeeccccccccCCcCCCCCeeeecccccc-cCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHH
Q 011283 248 TGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAF-SKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLL 326 (489)
Q Consensus 248 TG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f-~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~ 326 (489)
|| ++++-... |+...-..||.+ .+ -.||.+||+ .++.
T Consensus 126 TG--Si~~~~~g------------g~~~r~GG~Gf~IgD-------------------------egSga~ig~---~~L~ 163 (301)
T COG2971 126 TG--SIGYGRKG------------GRRERVGGWGFPIGD-------------------------EGSGAWIGR---EALQ 163 (301)
T ss_pred CC--eEEEEEeC------------CeeEEecCcCccccc-------------------------cchHHHHHH---HHHH
Confidence 66 55554311 345555688877 21 157888854 4333
Q ss_pred HHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhh-hhccc------c-cccccceeeeeehhhhhhc
Q 011283 327 KMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLY-DVAGV------E-SSLKARKVVIEVCDTIVKR 398 (489)
Q Consensus 327 ~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~-~~~~~------~-~~~~d~~~~~~ia~~V~~R 398 (489)
+...+ |.+..+.. .+....+..+.. |.+.+..... ...+. . .-.+.++.++.+|..|+++
T Consensus 164 ~~lra---~DG~~~~t-----~L~d~v~~~f~~----d~edlv~~~y~a~~~~~~ia~lap~V~~~A~~GD~~A~~Il~~ 231 (301)
T COG2971 164 EALRA---FDGRREAT-----PLTDAVMAEFNL----DPEDLVAFIYKAGPGDKKIAALAPAVFEAARKGDPVAIRILKE 231 (301)
T ss_pred HHHHH---hcCCccCC-----hHHHHHHHHhCC----CHHHHHHHHHhcCCchHHHHHhhHHHHHHHHcCCHHHHHHHHH
Confidence 33322 22222211 122222222221 1111111111 10000 0 0113356777999999999
Q ss_pred CCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHH
Q 011283 399 GGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALL 478 (489)
Q Consensus 399 aA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~ 478 (489)
||.+++..+-++....+. ..+.+-||++..++.|....++.+-. + . .+--..||..+
T Consensus 232 aa~~i~~~~~~l~~~~g~----------~~l~l~GG~~~~~~~~~~~~~~~l~~---~-----~-----~~D~~~GA~~~ 288 (301)
T COG2971 232 AAAYIATLLEALSIFNGS----------EKLSLLGGLAPSYPYYLSLFRRALLV---P-----P-----IGDALSGAVLL 288 (301)
T ss_pred HHHHHHHHHHHHhcccCC----------ceEEEeccccccchhhHHHHHHHhcC---C-----c-----cccHHHHHHHH
Confidence 997666655555322222 35889999999999999998875421 1 1 34447788777
Q ss_pred hh
Q 011283 479 AS 480 (489)
Q Consensus 479 aa 480 (489)
|.
T Consensus 289 A~ 290 (301)
T COG2971 289 AL 290 (301)
T ss_pred HH
Confidence 64
No 30
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=2.2e-05 Score=77.41 Aligned_cols=289 Identities=17% Similarity=0.178 Sum_probs=157.3
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeE
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFT 170 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~t 170 (489)
..|+=|+||||.|+++|+.... +.... +.++. .+ |..+-+.|++++.++.. ..+...-|+
T Consensus 7 p~LvgDIGGTnaRfaLv~~a~~--~~~~~--~~~~~------~d----ypsle~av~~yl~~~~~------~~~~~a~~A 66 (320)
T COG0837 7 PRLVGDIGGTNARFALVEIAPA--EPLQA--ETYAC------AD----YPSLEEAVQDYLSEHTA------VAPRSACFA 66 (320)
T ss_pred ceEEEecCCcceEEEEeccCCC--Ccccc--ceecc------cC----cCCHHHHHHHHHHHhhc------cCccceEEE
Confidence 3566699999999999987542 11110 01221 11 23344555666555421 234557888
Q ss_pred EeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeecccccccccccccc-------------
Q 011283 171 FSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD------------- 237 (489)
Q Consensus 171 fSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~------------- 237 (489)
..+|++-..+ .=+..+|. | +. +.+++.| +++- +.++||=.|..++-...+
T Consensus 67 iAgPv~gd~v-~lTN~~W~--~--------s~-~~~r~~L---gl~~--v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~ 129 (320)
T COG0837 67 IAGPIDGDEV-RLTNHDWV--F--------SI-ARMRAEL---GLDH--LSLINDFAAQALAIPRLGAEDLEQIGGGKPE 129 (320)
T ss_pred EecCccCCEE-eeecCccc--c--------cH-HHHHHhc---CCCc--EEEechHHHHHhhccccCHHHHHHhcCCCCC
Confidence 8899863111 11222564 1 22 2334434 6642 479999999888754421
Q ss_pred -CceEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccc-cCCcchhhhhhhhchh
Q 011283 238 -EDVMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAA-SINPGEQIYEKTISGM 315 (489)
Q Consensus 238 -~~~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~-s~~pg~~~~Ek~~SG~ 315 (489)
.....-+==|||.|.|...+... +.+.+-+|-||-. .-|+|+-|.++=+. ..+-|.-.-|...||+
T Consensus 130 ~~a~~avlGPGTGLGVa~Lv~~~~-----------~w~~lp~EGGHvd-f~P~~~~E~~i~~~l~~~~GrVS~Er~LSG~ 197 (320)
T COG0837 130 PNAPRAVLGPGTGLGVAGLVPNGG-----------GWIPLPGEGGHVD-FAPRSEREFQILEYLRARFGRVSAERVLSGP 197 (320)
T ss_pred CCCceEEEcCCCCcceEEEEecCC-----------eeEeccCCCcccc-CCCCCHHHHHHHHHHHHhcCccchhhhcccc
Confidence 12333334578888888886442 3467778877762 44777777665321 1223445679999999
Q ss_pred hHHHHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhh
Q 011283 316 YLGEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTI 395 (489)
Q Consensus 316 yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V 395 (489)
.|..+.|-+... . +..|.. .+...+.+. .+. -.+..|+..
T Consensus 198 GL~~iY~al~~~-~-------~~~~~~------~~p~~It~~-------------al~-------------g~d~~a~~t 237 (320)
T COG0837 198 GLVNLYRALCAA-D-------GRLPED------LTPAAITER-------------ALA-------------GGDALARET 237 (320)
T ss_pred cHHHHHHHHHHh-h-------CCCccc------CCHHHHHHH-------------Hhc-------------CCCHHHHHH
Confidence 997766643321 1 011111 111111111 111 123667777
Q ss_pred hhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchh------HHHHHHHHHH--HHhhCcccccceEEEec
Q 011283 396 VKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYT------QYRRYVHEAV--TELLGTEISKNVVIEHT 467 (489)
Q Consensus 396 ~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~------~f~~~i~~~l--~~~~~~~~~~~v~i~~a 467 (489)
++....++|.--..+.-.+... --|=+.||+..+.- .|+++.+..= ..++. .-.|.++..
T Consensus 238 l~lF~~~lG~~AGdlAL~lgar---------GGVyiaGGI~pril~~l~~s~Fr~~FedKGr~sa~l~---~IPV~vi~~ 305 (320)
T COG0837 238 LSLFCAILGRVAGDLALTLGAR---------GGVYIAGGIVPRILEALKASGFRARFEDKGRMSAYLA---DIPVYVILH 305 (320)
T ss_pred HHHHHHHHHhhHHhHHHHhhcc---------CcEEEcCCchHhHHHHHhcchHHHHhhhcCchHHHHh---hCCEEEEec
Confidence 7777777776666666666651 12556777755432 2333332211 11111 124667777
Q ss_pred cCCcchhHHHHhh
Q 011283 468 KDGSGIGAALLAS 480 (489)
Q Consensus 468 ~Dgs~iGAA~~aa 480 (489)
...+++|||..+.
T Consensus 306 ~~~gL~Gaa~~~~ 318 (320)
T COG0837 306 PQPGLLGAAAALR 318 (320)
T ss_pred CCchHHHHHHHhc
Confidence 8999999998764
No 31
>PRK13318 pantothenate kinase; Reviewed
Probab=97.72 E-value=2.3e-05 Score=77.58 Aligned_cols=132 Identities=19% Similarity=0.140 Sum_probs=71.0
Q ss_pred EEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEE
Q 011283 92 FYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTF 171 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tf 171 (489)
+|+||+|||++|+++++ ++ +++.. +++|+... .+.+++++++ .++++..+... .+...+|+++
T Consensus 2 iL~IDIGnT~iK~al~d-~g---~i~~~----~~~~t~~~-~~~~~~~~~l----~~l~~~~~~~~----~~i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GG---KLVAH----WRISTDSR-RTADEYGVWL----KQLLGLSGLDP----EDITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEE-CC---EEEEE----EEEeCCCC-CCHHHHHHHH----HHHHHHcCCCc----ccCceEEEEE
Confidence 68999999999999998 44 34442 44554432 2345555444 44444433210 1234455554
Q ss_pred eeeccccccccceeeeeccceeeecCCCch-HHHHHHHHHHhcCcceEeeeeecc--------ccccccccccccCceEE
Q 011283 172 SFPVKQTSIDSGVLIKWTKGFSVSGTAGKD-VVACLNEAMERQGLDMRVSALVND--------TVGTLAGARYWDEDVMV 242 (489)
Q Consensus 172 SfP~~q~~i~~g~li~wtKgf~~~~~~G~d-v~~lL~~al~~~~l~v~v~ai~ND--------tvatlla~~~~~~~~~i 242 (489)
--|-. +..-.+.+..|-+ ..+ +....+..+ ++++ ++.|| +++.++.+.|.+ +.+
T Consensus 65 Vvp~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~---gl~~---~y~np~~lG~DR~a~~~aa~~~~~~--~~i 127 (258)
T PRK13318 65 VVPSV-MHSLERMCRKYFN--------IEPLVVVGPGVKT---GINI---KVDNPKEVGADRIVNAVAAYELYGG--PLI 127 (258)
T ss_pred ecCch-HHHHHHHHHHHhC--------CCCeEEECCCcCC---CCce---ecCChhhcchHHHHHHHHHHHHcCC--CEE
Confidence 22421 1111111111111 111 111212212 6666 78898 666666666654 688
Q ss_pred EEEecCCcceeEEee
Q 011283 243 AVILGTGTNACYVEQ 257 (489)
Q Consensus 243 glIlGTG~Na~yie~ 257 (489)
.+.+||++...++..
T Consensus 128 vid~GTA~t~d~v~~ 142 (258)
T PRK13318 128 VVDFGTATTFDVVSA 142 (258)
T ss_pred EEEcCCceEEEEEcC
Confidence 999999999999854
No 32
>PRK00976 hypothetical protein; Provisional
Probab=97.23 E-value=0.0002 Score=72.31 Aligned_cols=77 Identities=26% Similarity=0.248 Sum_probs=59.8
Q ss_pred eeeeehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEe
Q 011283 387 VVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEH 466 (489)
Q Consensus 387 ~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~ 466 (489)
..+..|+.++++.++.+|.+|+++++.++| ..|+++||+.+..+. .+.+.+++.+.+. .-.+
T Consensus 235 ~GD~~A~~aid~~~~~LA~~IAnLi~llDP----------e~IVLGGGVS~~~e~---~L~~~I~e~l~~~-----~a~L 296 (326)
T PRK00976 235 KGDEKAKLAIDTLALFVAMEIASLLLLNPE----------DNVVLAGSVGEMDEP---DVSERIKELLDKK-----VLVL 296 (326)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhcCC----------CEEEEcCccccCchh---HHHHHHHHHhccc-----cccc
Confidence 345789999999999999999999999998 369999999987533 3555555554331 3345
Q ss_pred ccCCcchhHHHHhhc
Q 011283 467 TKDGSGIGAALLASA 481 (489)
Q Consensus 467 a~Dgs~iGAA~~aa~ 481 (489)
.++++.+|||.+|..
T Consensus 297 G~dAGaiGAA~iA~~ 311 (326)
T PRK00976 297 GKESAAIGLALIARD 311 (326)
T ss_pred CCchHHHHHHHHHHH
Confidence 689999999998864
No 33
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=97.08 E-value=0.0014 Score=63.98 Aligned_cols=61 Identities=13% Similarity=0.286 Sum_probs=44.0
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccc---hhhccChHHHHHHHHHhhhhHHHhhc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQ---ELMCGTSEELFDFIATGLAKFAEKEA 154 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~---~~~~~~~~~lfd~Ia~~i~~~~~~~~ 154 (489)
+||+||+|.|++|+++++..|+ ++...+..++... .....+++++++.+.+++++++++.+
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~---iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~ 64 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGK---IVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAG 64 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSC---EEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCT
T ss_pred CEEEEEEcccceEEEEEeCCCC---EEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcC
Confidence 5899999999999999997664 5554433333221 12234688999999999999998763
No 34
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=97.06 E-value=0.00096 Score=71.75 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=54.2
Q ss_pred EEEecCCcceEEEEEEeCCccceeeecccccccc--c-chhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeee
Q 011283 93 YALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--P-QELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGF 169 (489)
Q Consensus 93 LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~ 169 (489)
|+||+|.|++|++++++.|+ ++.+....++. | ......+.+++++.+.+++++++++.+.. ..++..||+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~----~~~I~gIgv 73 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGE---VIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEM----GQDIKGIGI 73 (481)
T ss_pred CceeecCcceEEEEECCCCC---EEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCC----cccEEEEEE
Confidence 58999999999999998875 55444322221 0 11112457889999999999999876532 145677888
Q ss_pred E--Eeeec--cc
Q 011283 170 T--FSFPV--KQ 177 (489)
Q Consensus 170 t--fSfP~--~q 177 (489)
+ .++++ +.
T Consensus 74 s~~~~g~v~~d~ 85 (481)
T TIGR01312 74 SGQMHGLVLLDA 85 (481)
T ss_pred ecCCceeEEECC
Confidence 8 77777 64
No 35
>PRK13321 pantothenate kinase; Reviewed
Probab=96.83 E-value=0.00076 Score=66.67 Aligned_cols=136 Identities=20% Similarity=0.185 Sum_probs=67.7
Q ss_pred EEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEE
Q 011283 92 FYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTF 171 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tf 171 (489)
+|+||+|||++|+++++ ++ +++. ++++|+... .+.++++..+.+.+.+. +... .+...++++.
T Consensus 2 iL~IDIGnT~ik~gl~~-~~---~i~~----~~~~~T~~~-~~~~~~~~~l~~l~~~~----~~~~----~~i~~i~vss 64 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GD---RLLR----SFRLPTDKS-RTSDELGILLLSLFRHA----GLDP----EDIRAVVISS 64 (256)
T ss_pred EEEEEECCCeEEEEEEE-CC---EEEE----EEEEecCCC-CCHHHHHHHHHHHHHHc----CCCh----hhCCeEEEEe
Confidence 68999999999999998 33 2443 245665543 23556666665554433 2110 1234555555
Q ss_pred eeeccccccccceeeeeccc-eeeec-CCCchHHHHHHHHHHhcCcceEeeeeecc--ccccccccccccCceEEEEEec
Q 011283 172 SFPVKQTSIDSGVLIKWTKG-FSVSG-TAGKDVVACLNEAMERQGLDMRVSALVND--TVGTLAGARYWDEDVMVAVILG 247 (489)
Q Consensus 172 SfP~~q~~i~~g~li~wtKg-f~~~~-~~G~dv~~lL~~al~~~~l~v~v~ai~ND--tvatlla~~~~~~~~~iglIlG 247 (489)
--| +. .+.+..+.+. |+++. +.+.+....++..+ ..|. .+-|| +++.+..+.|.+ ++.+-+-+|
T Consensus 65 Vvp--~~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~y---~~P~---~lG~DR~a~~~aa~~~~~~-~~~lvid~G 132 (256)
T PRK13321 65 VVP--PL---NYSLESACKRYFGIKPLFVGPGIKTGLKIRY---DNPR---EVGADRIVNAVAARRLYPD-RNLIVVDFG 132 (256)
T ss_pred ecc--cH---HHHHHHHHHHHhCCCeEEECCCCCCCccccc---CChh---hccHHHHHHHHHHHHHcCC-CCEEEEECC
Confidence 333 21 1222211111 11111 12222222232222 3344 58899 454444455543 256777777
Q ss_pred CCcceeEEe
Q 011283 248 TGTNACYVE 256 (489)
Q Consensus 248 TG~Na~yie 256 (489)
|=+.-=++.
T Consensus 133 TA~T~d~v~ 141 (256)
T PRK13321 133 TATTFDCVS 141 (256)
T ss_pred CceEEEEEc
Confidence 766665554
No 36
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.53 E-value=0.01 Score=64.99 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=49.5
Q ss_pred EEEEecCCcceEEEEEEeCCccceeeecccccccc--cc-hhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeee
Q 011283 92 FYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--PQ-ELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIG 168 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG 168 (489)
||+||+|+|++|+++++.+|+ ++...++.+++ |. .....+++++++.+.+++++.+++.+.. ..++..||
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~---i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~----~~~I~~Ig 74 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGD---ILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVD----PNSVKGIG 74 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCC---EEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCC----hhheEEEE
Confidence 799999999999999998775 55543323332 21 1223468889999999999998865432 13355556
Q ss_pred eEE
Q 011283 169 FTF 171 (489)
Q Consensus 169 ~tf 171 (489)
++.
T Consensus 75 is~ 77 (541)
T TIGR01315 75 FDA 77 (541)
T ss_pred ecc
Confidence 554
No 37
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=96.27 E-value=0.01 Score=64.47 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=43.3
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeeccccccc--ccch-hhccChHHHHHHHHHhhhhHHHhhc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVS--IPQE-LMCGTSEELFDFIATGLAKFAEKEA 154 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~--ip~~-~~~~~~~~lfd~Ia~~i~~~~~~~~ 154 (489)
++||||+|+|++|+++++.+|+ ++.+...+++ .|.. ....+.+++++.+.+++++++++.+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~ 64 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGK---IVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLE 64 (505)
T ss_pred CEEEEeccccceEEEEEcCCCC---EEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999998774 5554433333 2111 1234678899999999999987543
No 38
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=96.23 E-value=0.0098 Score=64.37 Aligned_cols=61 Identities=18% Similarity=0.289 Sum_probs=43.3
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccc--cch-hhccChHHHHHHHHHhhhhHHHhhc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--PQE-LMCGTSEELFDFIATGLAKFAEKEA 154 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p~~-~~~~~~~~lfd~Ia~~i~~~~~~~~ 154 (489)
++|+||+|+|++|+++++.+|+ ++...+..++. |.. ....+.+++++.+.+++++.+++.+
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~ 65 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKDGN---IVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAG 65 (493)
T ss_pred eEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999999998774 55443222221 211 1123578899999999999988765
No 39
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=96.17 E-value=0.016 Score=63.21 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=44.2
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeeccccccccc-----chhhccChHHHHHHHHHhhhhHHHhhc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIP-----QELMCGTSEELFDFIATGLAKFAEKEA 154 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip-----~~~~~~~~~~lfd~Ia~~i~~~~~~~~ 154 (489)
++|+||+|.|++|+++++.+|+ ++...+..++.+ ......+.+++++.+.+++++.+++.+
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~---~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~ 69 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGN---QIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAG 69 (520)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999998875 444433333321 112234688999999999999987654
No 40
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.05 E-value=0.013 Score=63.50 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=44.0
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeeccccccc--ccch-hhccChHHHHHHHHHhhhhHHHhhc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVS--IPQE-LMCGTSEELFDFIATGLAKFAEKEA 154 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~--ip~~-~~~~~~~~lfd~Ia~~i~~~~~~~~ 154 (489)
++|+||+|+|++|+++++.+|+ ++...+..++ .|.. ....+.+++++.+.+++++++++.+
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~---~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~ 69 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGN---IVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAG 69 (498)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999999998775 4444322333 2221 1123688999999999999987654
No 41
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.97 E-value=0.016 Score=63.39 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=45.6
Q ss_pred cEEEEecCCcceEEEEEE-eCCccceeeecccccccc-------c-------chhhccChHHHHHHHHHhhhhHHHhhc
Q 011283 91 LFYALDLGGTNFRVLRVQ-LGGQEERVQATEFEQVSI-------P-------QELMCGTSEELFDFIATGLAKFAEKEA 154 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~-l~g~~~~i~~~~~~~~~i-------p-------~~~~~~~~~~lfd~Ia~~i~~~~~~~~ 154 (489)
++|+||+|.|++|+++++ .+|+ ++...++.+++ | ......+++++++.+.+++++.+++.+
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~---~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~ 77 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGE---EIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELG 77 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCc---EeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcC
Confidence 589999999999999999 7775 55444334442 3 223345688999999999999998754
No 42
>PRK15027 xylulokinase; Provisional
Probab=95.89 E-value=0.02 Score=61.81 Aligned_cols=71 Identities=15% Similarity=0.372 Sum_probs=49.7
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccc--c-chhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeee
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--P-QELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREI 167 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~l 167 (489)
+||+||+|.|++|++++|..|+ ++...++.+++ | ......+++++++.+.+++++++++... +++..|
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~---vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~~~------~~I~aI 71 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGE---VVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSL------QDVKAL 71 (484)
T ss_pred CEEEEEecccceEEEEEcCCCC---EEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhCCc------cceeEE
Confidence 4899999999999999998774 66554434443 2 1122346788999999999999875421 345666
Q ss_pred eeE
Q 011283 168 GFT 170 (489)
Q Consensus 168 G~t 170 (489)
|++
T Consensus 72 ~is 74 (484)
T PRK15027 72 GIA 74 (484)
T ss_pred EEe
Confidence 664
No 43
>PRK10331 L-fuculokinase; Provisional
Probab=95.55 E-value=0.035 Score=59.68 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=42.9
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccc----cc-hhhccChHHHHHHHHHhhhhHHHhh
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI----PQ-ELMCGTSEELFDFIATGLAKFAEKE 153 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i----p~-~~~~~~~~~lfd~Ia~~i~~~~~~~ 153 (489)
++|+||+|.|++|+++++.+|+ ++...+..++. |. .....+++++++.+.+++++++++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~---~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~ 67 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGK---IVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL 67 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCc---EEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999998874 55444333221 11 1223467889999999999998753
No 44
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.21 E-value=0.053 Score=58.91 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=45.4
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeecccccccccch---hhccChHHHHHHHHHhhhhHHHhhc
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQE---LMCGTSEELFDFIATGLAKFAEKEA 154 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~---~~~~~~~~lfd~Ia~~i~~~~~~~~ 154 (489)
.+||+||+|.|++|+.+++.++. .++......+++... ....+.++++..+.++|++++++..
T Consensus 4 ~~~lgIDiGTt~~Kavl~d~~~~--~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~ 69 (502)
T COG1070 4 KYVLGIDIGTTSVKAVLFDEDGG--EVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESK 69 (502)
T ss_pred cEEEEEEcCCCcEEEEEEeCCCC--eEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcc
Confidence 47999999999999999999842 355443222322211 2234689999999999999998764
No 45
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.02 E-value=0.064 Score=58.24 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=43.7
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccc--c-chhhccChHHHHHHHHHhhhhHHHhhc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--P-QELMCGTSEELFDFIATGLAKFAEKEA 154 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~i~~~~~~~~ 154 (489)
.+|+||+|.|++|+++++.+|+ ++...+..+++ | ......+++++++.+.+++.+.+++.+
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~---~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 66 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGN---VVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLR 66 (504)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999999998774 54443323331 1 112234678899999999999987654
No 46
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.00 E-value=0.059 Score=57.91 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=42.4
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccc----c-chhhccChHHHHHHHHHhhhhHHHh
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI----P-QELMCGTSEELFDFIATGLAKFAEK 152 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i----p-~~~~~~~~~~lfd~Ia~~i~~~~~~ 152 (489)
.+|+||+|.|++|+++++.+|+ ++.+.+.+++. | ......+.+++++.+.+++++++.+
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~---~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~ 65 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGK---IVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE 65 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCC---EEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999998774 55444333321 1 1122346788999999999999864
No 47
>PRK04123 ribulokinase; Provisional
Probab=94.99 E-value=0.062 Score=59.00 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=42.8
Q ss_pred cEEEEecCCcceEEEEEEe-CCccceeeecccccccc--------cch-hhccChHHHHHHHHHhhhhHHHhhc
Q 011283 91 LFYALDLGGTNFRVLRVQL-GGQEERVQATEFEQVSI--------PQE-LMCGTSEELFDFIATGLAKFAEKEA 154 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l-~g~~~~i~~~~~~~~~i--------p~~-~~~~~~~~lfd~Ia~~i~~~~~~~~ 154 (489)
+|||||+|.|++|+++++. +|+ ++...+..++. |.. ....+++++++.+.+++++.+++.+
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~ 74 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGE---ELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAG 74 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCc---EeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999995 774 44443333331 111 1223577899999999999887654
No 48
>PLN02295 glycerol kinase
Probab=94.77 E-value=0.083 Score=57.52 Aligned_cols=61 Identities=25% Similarity=0.248 Sum_probs=44.4
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccc--cc-hhhccChHHHHHHHHHhhhhHHHhhc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--PQ-ELMCGTSEELFDFIATGLAKFAEKEA 154 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~~~~~~~ 154 (489)
++|+||+|.|++|++++|.+|+ ++...+..+++ |. .....+++++++.+.+++++.+++.+
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~---~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~ 64 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDAR---PVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAA 64 (512)
T ss_pred CEEEEecCCCceEEEEECCCCC---EEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 4799999999999999998775 55443333332 21 12234688999999999999998764
No 49
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=93.89 E-value=0.19 Score=53.14 Aligned_cols=104 Identities=21% Similarity=0.252 Sum_probs=71.3
Q ss_pred cccEEEEecCCcceEEEEEEeCCccceeeeccc----ccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCce
Q 011283 89 RGLFYALDLGGTNFRVLRVQLGGQEERVQATEF----EQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQ 164 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~----~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~ 164 (489)
..++++||-|-|+.|+.+++.+|+ ++.... +-||-|.-+ .-++.+++..+..++.+.+.+.++.. .++
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~---iva~~q~e~~Q~yP~~GWV-EhDp~eIw~~~~~~l~~a~~~~~i~~----~~i 75 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGN---IVAIAQREFTQIYPQPGWV-EHDPLEIWASVRSVLKEALAKAGIKP----GEI 75 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCC---chhhhhhhhhhhCCCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCc----cce
Confidence 467899999999999999998875 333221 135655443 35789999999999999988876542 567
Q ss_pred eeeeeEEeeeccccccccceeeeecc--ce---ee---ecCCCchHHHHHHHH
Q 011283 165 REIGFTFSFPVKQTSIDSGVLIKWTK--GF---SV---SGTAGKDVVACLNEA 209 (489)
Q Consensus 165 ~~lG~tfSfP~~q~~i~~g~li~wtK--gf---~~---~~~~G~dv~~lL~~a 209 (489)
..|||| +| +.+.+-|.| |= |+ .+-...++++.|.+.
T Consensus 76 aaIGIT-----NQ----RETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~ 119 (499)
T COG0554 76 AAIGIT-----NQ----RETTVVWDKETGKPIYNAIVWQDRRTADICEELKAD 119 (499)
T ss_pred EEEEee-----cc----ceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhc
Confidence 888887 66 556666877 21 11 122445666666654
No 50
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=93.26 E-value=0.37 Score=51.89 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=59.8
Q ss_pred cccEEEEecCCcceEEEEEE-eCCccceeeecccc----cccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCc
Q 011283 89 RGLFYALDLGGTNFRVLRVQ-LGGQEERVQATEFE----QVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGR 163 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~-l~g~~~~i~~~~~~----~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~ 163 (489)
...+++||+|-|..|+++++ -.++ .+....+ .++.+. ....++.+++..+.+||+...+.... ..
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e---~l~~~~~~i~~~~~~~~-~~eq~p~eI~~~V~~ci~~~~e~l~~------~~ 74 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGE---LLSLAQKEITQEFPKEG-WVEQDPKEIWQAVCRCIEKACEKLGV------LN 74 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCc---cceeeeeeeeeecCCCC-eEEeCHHHHHHHHHHHHHHHHHhhcc------cc
Confidence 45689999999999999999 3443 2221111 122222 23457899999999999998876543 23
Q ss_pred eeeeeeEEeeeccccccccceeeeeccceee
Q 011283 164 QREIGFTFSFPVKQTSIDSGVLIKWTKGFSV 194 (489)
Q Consensus 164 ~~~lG~tfSfP~~q~~i~~g~li~wtKgf~~ 194 (489)
....|++.++-+.| .++++ -|.|...-
T Consensus 75 ~~~~~~~~igv~~q---r~~~v-~w~~~tg~ 101 (516)
T KOG2517|consen 75 IKVVGATCIGVVNQ---REGSV-LWNKRTGE 101 (516)
T ss_pred ccccccEEEEEEec---CCceE-EeecCCCC
Confidence 45566888888887 33333 36665433
No 51
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=91.42 E-value=0.37 Score=47.21 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=32.3
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEA 154 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~ 154 (489)
++|+||+|.|++|+++++ ++ +++... ..+ .+..++.+.+.+.+.+++.+
T Consensus 1 ~~lGIDiGtts~K~vl~d-~g---~il~~~----~~~-------~~~~~~~~~~~l~~~~~~~~ 49 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-DG---KVIGYK----WLD-------TTPVIEETARAILEALKEAG 49 (248)
T ss_pred CEEEEEcChhheEEEEEc-CC---EEEEEE----Eec-------CCCCHHHHHHHHHHHHHHcC
Confidence 378999999999999998 55 355432 112 12345556677777775543
No 52
>PLN02669 xylulokinase
Probab=89.86 E-value=0.74 Score=50.70 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=37.9
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeecccccccc--cchh----hccChH----------HHHHHHHHhhhhHHH
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--PQEL----MCGTSE----------ELFDFIATGLAKFAE 151 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p~~~----~~~~~~----------~lfd~Ia~~i~~~~~ 151 (489)
.+|||||+|.|++|+++++.+|+ ++...+..+++ |..- ...+.+ .+++-+..+++++.+
T Consensus 8 ~~~LGiD~GT~s~Ka~l~d~~g~---vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~~ 82 (556)
T PLN02669 8 SLFLGFDSSTQSLKATVLDSNLR---IVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLAK 82 (556)
T ss_pred CeEEEEecccCCeEEEEEcCCCC---EEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998775 55444333331 1100 011233 455888888888763
No 53
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=89.15 E-value=0.96 Score=48.68 Aligned_cols=75 Identities=15% Similarity=0.251 Sum_probs=56.1
Q ss_pred hhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchh
Q 011283 395 IVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIG 474 (489)
Q Consensus 395 V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iG 474 (489)
+..+....+|.|.-.|+..+....- +-.+|-+-||. .++|.+.+.+-... .+.+.+..+++...+|
T Consensus 406 lY~a~l~a~A~GtR~Iie~~~~~g~-----~Id~l~~sGG~-~KN~llmql~aDvt--------g~~v~i~~s~~a~llG 471 (544)
T COG1069 406 LYRALLEATAFGTRAIIETFEDQGI-----AIDTLFASGGI-RKNPLLMQLYADVT--------GRPVVIPASDQAVLLG 471 (544)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHcCC-----eeeEEEecCCc-ccCHHHHHHHHHhc--------CCeEEeecccchhhhH
Confidence 4455556778888999998876322 22357777887 89998887775532 4578888899999999
Q ss_pred HHHHhhccc
Q 011283 475 AALLASANS 483 (489)
Q Consensus 475 AA~~aa~~~ 483 (489)
+|+.+|++.
T Consensus 472 sAm~~avAa 480 (544)
T COG1069 472 AAMFAAVAA 480 (544)
T ss_pred HHHHHHHHh
Confidence 999999876
No 54
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=87.98 E-value=0.8 Score=49.01 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=36.7
Q ss_pred EEEecCCcceEEEEEEeCCccceee-eccccccc--ccch-hhccChHHHHHHHHHhhhhHHH
Q 011283 93 YALDLGGTNFRVLRVQLGGQEERVQ-ATEFEQVS--IPQE-LMCGTSEELFDFIATGLAKFAE 151 (489)
Q Consensus 93 LaIDlGGTnlRv~lV~l~g~~~~i~-~~~~~~~~--ip~~-~~~~~~~~lfd~Ia~~i~~~~~ 151 (489)
||||+|.|+.|+++++.++..+++. ....+..+ +|.+ ...-+.+.+++.+.+++++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 5899999999999999974322343 22111111 1111 1123466788999999888865
No 55
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=85.54 E-value=4.3 Score=41.58 Aligned_cols=102 Identities=12% Similarity=0.204 Sum_probs=55.9
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeE
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFT 170 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~t 170 (489)
.++|||+|.+++|++.++..++..++.... ..++|......+.-.=.+.+++.|.+.+++.+.. ...+.++
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~--~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~~~~-------~k~v~~a 74 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGDRYKLEHYA--VEPLPAGIFTEGHIVEYQAVAEALKELLSELGIN-------TKKAATA 74 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCCceEEEEEE--EEECCCCcccCCCccCHHHHHHHHHHHHHHcCCC-------cceEEEE
Confidence 589999999999999998655433444322 3456654332211111355677777777765421 2234444
Q ss_pred Eeeeccccccccceeeeeccceeeec-CCCchHHHHHHHHHHh
Q 011283 171 FSFPVKQTSIDSGVLIKWTKGFSVSG-TAGKDVVACLNEAMER 212 (489)
Q Consensus 171 fSfP~~q~~i~~g~li~wtKgf~~~~-~~G~dv~~lL~~al~~ 212 (489)
+|.+ . .+. |-+++|. +..+++.+.+.-..++
T Consensus 75 lp~~--~------~~~---r~~~~p~~i~~~el~~~i~~e~~~ 106 (348)
T TIGR01175 75 VPGS--A------VIT---KVIPVPAGLDERELEFAVYIEASH 106 (348)
T ss_pred ecCC--e------eEE---EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4333 2 111 2244554 4556777777655543
No 56
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=83.54 E-value=0.82 Score=42.65 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=34.4
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhcc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASAN 482 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~ 482 (489)
.|.+.||.. +.+.+.+.+...+. ..|.+...++++.+|||++|+++
T Consensus 152 ~i~~~GG~~-~n~~~~q~~Advl~--------~~V~~~~~~e~~a~GaA~~A~~a 197 (198)
T PF02782_consen 152 RIRVSGGGA-KNPLWMQILADVLG--------RPVVRPEVEEASALGAALLAAVA 197 (198)
T ss_dssp EEEEESGGG-GSHHHHHHHHHHHT--------SEEEEESSSTHHHHHHHHHHHHH
T ss_pred eeEeccccc-cChHHHHHHHHHhC--------CceEeCCCCchHHHHHHHHHHhh
Confidence 477778877 78888887766442 24656556899999999999875
No 57
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=82.57 E-value=10 Score=42.61 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=36.8
Q ss_pred ecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEEEecCCccee
Q 011283 195 SGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAVILGTGTNAC 253 (489)
Q Consensus 195 ~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~iglIlGTG~Na~ 253 (489)
|..-+..=.+.+.+|.+..|+++ +.++|+.+|++++-.+. ....++-+=+|-|+=-.
T Consensus 148 Pa~f~~~qR~a~~~Aa~~AGl~v--~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dv 208 (653)
T PTZ00009 148 PAYFNDSQRQATKDAGTIAGLNV--LRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDV 208 (653)
T ss_pred CCCCCHHHHHHHHHHHHHcCCce--eEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEE
Confidence 33334455677777777678875 68999999999985442 13445555566665433
No 58
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=82.15 E-value=2.8 Score=40.68 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=44.9
Q ss_pred eeeecccccccccccc----ccCceEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccc
Q 011283 220 SALVNDTVGTLAGARY----WDEDVMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRD 295 (489)
Q Consensus 220 ~ai~NDtvatlla~~~----~~~~~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~ 295 (489)
|.+.||+.+-.+.--. -+--..+-+=+|+|+.--++...+......|.. -.| -|-||...-.-+.|.||..
T Consensus 122 vFv~~d~~~e~~~~~~~~~~h~lypyilvNiGsGvSilkvtgpsqf~RvGGss-lGG----GtlwGLlsLlt~a~~ydqm 196 (342)
T COG5146 122 VFVEFDAASEGLGILLKEQGHDLYPYILVNIGSGVSILKVTGPSQFERVGGSS-LGG----GTLWGLLSLLTQATDYDQM 196 (342)
T ss_pred HeeeeccccchhhhhhhhccccccceeeEeccCCeEEEEecCcchhccccccc-cCc----chHHHHHHHHcccccHHHH
Confidence 4789999887765433 233567888899998887776544332222211 111 2457755211267889998
Q ss_pred ccc
Q 011283 296 MDA 298 (489)
Q Consensus 296 ~D~ 298 (489)
+|.
T Consensus 197 ld~ 199 (342)
T COG5146 197 LDM 199 (342)
T ss_pred HHH
Confidence 884
No 59
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=80.88 E-value=3.7 Score=43.07 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.3
Q ss_pred CCccccEEEEecCCcceEEEEEE
Q 011283 86 GNERGLFYALDLGGTNFRVLRVQ 108 (489)
Q Consensus 86 G~E~G~~LaIDlGGTnlRv~lV~ 108 (489)
+..+|.|+|||+|+|+.|+++++
T Consensus 140 ~~~~g~~lGIDiGSTttK~Vl~d 162 (404)
T TIGR03286 140 ERQEGLTLGIDSGSTTTKAVVME 162 (404)
T ss_pred hccCCEEEEEEcChhheeeEEEc
Confidence 45567899999999999999987
No 60
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=78.18 E-value=32 Score=35.68 Aligned_cols=56 Identities=11% Similarity=0.217 Sum_probs=31.8
Q ss_pred EEEEecCCcceEEEEEEeCCcc-ceeeecccccccccch-hhccChHHHHHHHHHhhhhHHHh
Q 011283 92 FYALDLGGTNFRVLRVQLGGQE-ERVQATEFEQVSIPQE-LMCGTSEELFDFIATGLAKFAEK 152 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~g~~-~~i~~~~~~~~~ip~~-~~~~~~~~lfd~Ia~~i~~~~~~ 152 (489)
++|||+|-|++|+.+.+..+++ .+++... ..|.. +.++.-.+ .+.+++.|++.+++
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~----~~~~~gi~~G~I~d-~~~~~~~i~~al~~ 59 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVG----THPSRGIKKGVIND-IEAAVGSIQRAIEA 59 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEE----EecCCCccCcEEEc-HHHHHHHHHHHHHH
Confidence 6899999999999998875433 3444321 23422 22232222 34455555555554
No 61
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=74.61 E-value=5.1 Score=37.26 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=32.7
Q ss_pred EEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhh
Q 011283 93 YALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKE 153 (489)
Q Consensus 93 LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~ 153 (489)
|+||+|||+.=+.+++.+.+ ++.. .+.|++ .+++..-|.+.+.+++...
T Consensus 2 igIDvGGT~TD~v~~d~~~~---~~~~----~K~~Tt-----~~d~~~gi~~al~~l~~~~ 50 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTG---VVAT----AKVPTT-----PDDPAEGILEALDALLEES 50 (176)
T ss_pred eeEecCCCcEEEEEEeCCCC---EEEE----EEeCCC-----CcCHHHHHHHHHHhhhccc
Confidence 79999999999999987632 3432 344543 3455566667777766543
No 62
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=73.64 E-value=50 Score=34.03 Aligned_cols=48 Identities=19% Similarity=0.427 Sum_probs=31.8
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEE----eccCCcchhHHHHhh
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIE----HTKDGSGIGAALLAS 480 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~----~a~Dgs~iGAA~~aa 480 (489)
.|.+-|.+. ..|.|.+.+.+.+.++... ....+. .+++ +..|||++|-
T Consensus 263 ~IilSGr~~-~~~~~~~~l~~~l~~~~~~---~v~~l~~~~~~aKe-aA~GaAiIA~ 314 (343)
T PF07318_consen 263 EIILSGRFS-RIPEFRKKLEDRLEDYFPV---KVRKLEGLARKAKE-AAQGAAIIAN 314 (343)
T ss_pred EEEEecccc-ccHHHHHHHHHHHHhhccc---ceeecccccccchh-hhhhHHHHhh
Confidence 488889887 5778888888888776541 111121 1244 6889999874
No 63
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=72.71 E-value=29 Score=34.39 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=59.6
Q ss_pred cCCCccccEEEEecCCcceEEEEEEeCCccceeeeccccccccc-chhhccChHHHHHHHHHhhhhHHHhhcCccccCCC
Q 011283 84 PTGNERGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIP-QELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQG 162 (489)
Q Consensus 84 P~G~E~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip-~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~ 162 (489)
|.-+..+.+++||+|-|++|+.+.+..++ ++... ..| ..++.+.-.+ ++.....|..+++....... .
T Consensus 18 ~~~~~~~~~~~iDiGSssi~~vv~~~~~~---~~~~~----~~~~~~vr~G~i~d-i~~a~~~i~~~~~~ae~~~g---~ 86 (267)
T PRK15080 18 PVATESPLKVGVDLGTANIVLAVLDEDGQ---PVAGA----LEWADVVRDGIVVD-FIGAVTIVRRLKATLEEKLG---R 86 (267)
T ss_pred CCCCCCCEEEEEEccCceEEEEEEcCCCC---EEEEE----eccccccCCCEEee-HHHHHHHHHHHHHHHHHHhC---C
Confidence 44456778999999999999988776543 22221 112 1222221111 45555666666553210000 1
Q ss_pred ceeeeeeEEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccc
Q 011283 163 RQREIGFTFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAG 232 (489)
Q Consensus 163 ~~~~lG~tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla 232 (489)
....+ ..+.|.+++. .+ ...+.+++++.|+++ ..++++..|+..+
T Consensus 87 ~i~~v--~~~vp~~~~~--------------------~~-~~~~~~~~~~aGl~~--~~ii~e~~A~a~~ 131 (267)
T PRK15080 87 ELTHA--ATAIPPGTSE--------------------GD-PRAIINVVESAGLEV--THVLDEPTAAAAV 131 (267)
T ss_pred CcCeE--EEEeCCCCCc--------------------hh-HHHHHHHHHHcCCce--EEEechHHHHHHH
Confidence 11222 2355544311 01 123446676668876 3789999887764
No 64
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=71.90 E-value=41 Score=37.94 Aligned_cols=57 Identities=18% Similarity=0.143 Sum_probs=36.6
Q ss_pred CCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc--cCceEEEEEecCCcceeEEe
Q 011283 198 AGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW--DEDVMVAVILGTGTNACYVE 256 (489)
Q Consensus 198 ~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~--~~~~~iglIlGTG~Na~yie 256 (489)
.+..-.+.+.+|.+..|++| +.|+|+.+|++++-... ....++-+=+|-|+=-.-+.
T Consensus 171 F~~~qR~at~~Aa~~AGl~v--~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil 229 (657)
T PTZ00186 171 FNDAQRQATKDAGTIAGLNV--IRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVL 229 (657)
T ss_pred CChHHHHHHHHHHHHcCCCe--EEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEE
Confidence 34456667777776668876 58999999999975432 23444445566665443333
No 65
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=71.76 E-value=7.3 Score=43.66 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=39.0
Q ss_pred eeecCCCchHHHHHHHHHHhcCcceEeeeeecccccccccccc-c------cCceEEEEEecCCcceeEEeeccc
Q 011283 193 SVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARY-W------DEDVMVAVILGTGTNACYVEQMDA 260 (489)
Q Consensus 193 ~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~-~------~~~~~iglIlGTG~Na~yie~~~~ 260 (489)
++|.-.|+-=...|-+|-.-.|++ |..++||-+|++|.-.. + .+...|.-=.|.|.-.|-+.....
T Consensus 164 TVP~~F~qaeR~all~Aa~iagl~--vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~ 236 (902)
T KOG0104|consen 164 TVPPFFNQAERRALLQAAQIAGLN--VLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQL 236 (902)
T ss_pred eCCcccCHHHHHHHHHHHHhcCch--hhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEe
Confidence 344444443333333333223554 47999999999987332 1 456666667777777777766554
No 66
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=71.67 E-value=38 Score=37.92 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=34.1
Q ss_pred ecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc--cCceEEEEEecCCcc
Q 011283 195 SGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW--DEDVMVAVILGTGTN 251 (489)
Q Consensus 195 ~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~--~~~~~iglIlGTG~N 251 (489)
|..-+..=.+.+.+|.+..|+++ +.++|+.+|++++-... ....++-+=+|-|+=
T Consensus 157 Pa~f~~~qR~a~~~Aa~~AGl~v--~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~ 213 (616)
T PRK05183 157 PAYFDDAQRQATKDAARLAGLNV--LRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTF 213 (616)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCe--EEEecchHHHHHHhhcccCCCCEEEEEECCCCeE
Confidence 33334455677777877778876 58999999999874432 223333344555543
No 67
>PRK13410 molecular chaperone DnaK; Provisional
Probab=71.24 E-value=6.3 Score=44.49 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCcceEeeeeeccccccccccccc--cCceEEEEEecCCcc
Q 011283 202 VVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW--DEDVMVAVILGTGTN 251 (489)
Q Consensus 202 v~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~--~~~~~iglIlGTG~N 251 (489)
=.+.+.+|.+..|++| +.|+|+.+|++++-... ....++-+=+|.|+=
T Consensus 150 qR~a~~~Aa~~AGl~v--~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~ 199 (668)
T PRK13410 150 QRQATRDAGRIAGLEV--ERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTF 199 (668)
T ss_pred HHHHHHHHHHHcCCCe--EEEecchHHHHHHhccccCCCCEEEEEECCCCeE
Confidence 3455566665567775 58999999999974432 233444445666653
No 68
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=71.08 E-value=34 Score=37.96 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=35.1
Q ss_pred eecCCCchHHHHHHHHHHhcCcceEeeeeecccccccccccccc---CceEEEEEecCCcc
Q 011283 194 VSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD---EDVMVAVILGTGTN 251 (489)
Q Consensus 194 ~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~---~~~~iglIlGTG~N 251 (489)
+|..-+..-.+.+.+|.+..|+++ +.++|+.+|++++-.+.. ....+-+=+|-|+=
T Consensus 137 VPa~f~~~qR~a~~~Aa~~AGl~v--~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~ 195 (595)
T TIGR02350 137 VPAYFNDAQRQATKDAGKIAGLEV--LRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTF 195 (595)
T ss_pred ECCCCCHHHHHHHHHHHHHcCCce--EEEecchHHHHHHHhhcccCCCcEEEEEECCCCeE
Confidence 343334455677777776668875 589999999999744322 33444444555543
No 69
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=70.36 E-value=46 Score=37.63 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=35.4
Q ss_pred eecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc--cCceEEEEEecCCc
Q 011283 194 VSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW--DEDVMVAVILGTGT 250 (489)
Q Consensus 194 ~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~--~~~~~iglIlGTG~ 250 (489)
+|..-+..=.+.+.+|.+..|+++ +.++|+.+|++++.... ....++-+=+|-|+
T Consensus 181 VPa~f~~~qR~a~~~Aa~~AGl~v--~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT 237 (663)
T PTZ00400 181 VPAYFNDSQRQATKDAGKIAGLDV--LRIINEPTAAALAFGMDKNDGKTIAVYDLGGGT 237 (663)
T ss_pred ECCCCCHHHHHHHHHHHHHcCCce--EEEeCchHHHHHHhccccCCCcEEEEEeCCCCe
Confidence 343334445667777777678875 68999999999975443 23444444566664
No 70
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=67.31 E-value=63 Score=36.01 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=32.7
Q ss_pred CchHHHHHHHHHHhcCcceEeeeeeccccccccccccc--cCceEEEEEecCCcce
Q 011283 199 GKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW--DEDVMVAVILGTGTNA 252 (489)
Q Consensus 199 G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~--~~~~~iglIlGTG~Na 252 (489)
+..=.+.+.+|.+..|+++ +.++|+.+|++++-... .....+-+=+|-|+=-
T Consensus 153 ~~~qR~a~~~Aa~~AGl~v--~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~D 206 (595)
T PRK01433 153 NDAARGEVMLAAKIAGFEV--LRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFD 206 (595)
T ss_pred CHHHHHHHHHHHHHcCCCE--EEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEE
Confidence 3344566777776668876 58999999999874332 2233444445655533
No 71
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=66.91 E-value=6.4 Score=41.28 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.4
Q ss_pred ccEEEEecCCcceEEEEEEeCC
Q 011283 90 GLFYALDLGGTNFRVLRVQLGG 111 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g 111 (489)
.+|+|||+|+|+.|+.+++.++
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCC
Confidence 3789999999999999998754
No 72
>PRK13411 molecular chaperone DnaK; Provisional
Probab=66.01 E-value=62 Score=36.48 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=34.8
Q ss_pred eecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc-c--CceEEEEEecCCcc
Q 011283 194 VSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW-D--EDVMVAVILGTGTN 251 (489)
Q Consensus 194 ~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~-~--~~~~iglIlGTG~N 251 (489)
+|..-+..=.+.+.+|.+..|+++ +.++|+.+|++++-... . ....+-+=+|.|+=
T Consensus 140 VPa~f~~~qR~a~~~Aa~~AGl~v--~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~ 198 (653)
T PRK13411 140 VPAYFTDAQRQATKDAGTIAGLEV--LRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTF 198 (653)
T ss_pred ECCCCCcHHHHHHHHHHHHcCCCe--EEEecchHHHHHHhcccccCCCCEEEEEEcCCCeE
Confidence 343334455667777777678875 68999999999975432 1 22333344566543
No 73
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=65.71 E-value=27 Score=30.95 Aligned_cols=104 Identities=13% Similarity=0.233 Sum_probs=55.7
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeE
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFT 170 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~t 170 (489)
++||||+|-..+=+|+-+..+. +.. |++. +...+.+.+++.|.+.+.+. + +-++-
T Consensus 2 riL~lD~G~kriGiAvsd~~~~---~a~------pl~~-i~~~~~~~~~~~l~~li~~~----~-----------i~~iV 56 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLGI---IAS------PLET-IPRRNREKDIEELKKLIEEY----Q-----------IDGIV 56 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTTS---SEE------EEEE-EEECCCCCCHHHHHHHHHHC----C-----------ECEEE
T ss_pred eEEEEEeCCCeEEEEEecCCCC---eEe------eeEE-EECCCCchHHHHHHHHHHHh----C-----------CCEEE
Confidence 5899999999999999876542 111 1111 11122345666665555443 2 23555
Q ss_pred EeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeecccccccccccc
Q 011283 171 FSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARY 235 (489)
Q Consensus 171 fSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~ 235 (489)
+..|.+. +|..-.+++.. ....+.|.+.+ .++|| .++|-.--|..|...
T Consensus 57 vGlP~~~----~G~~~~~~~~v-------~~f~~~L~~~~--~~ipV---~~~DEr~TT~~A~~~ 105 (135)
T PF03652_consen 57 VGLPLNM----DGSESEQARRV-------RKFAEELKKRF--PGIPV---ILVDERLTTKEAERR 105 (135)
T ss_dssp EEEEBBC----TSSC-CCHHHH-------HHHHHHHHHHH---TSEE---EEEECSCSHHCCHCC
T ss_pred EeCCccc----CCCccHHHHHH-------HHHHHHHHHhc--CCCcE---EEECCChhHHHHHHH
Confidence 6666654 45444444211 23334444433 27787 677776666666543
No 74
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=64.22 E-value=11 Score=37.76 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=30.8
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHH
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAAL 477 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~ 477 (489)
.|++.||....+|..++.+.++++-+- .+-+.++..+-.+.+|||+
T Consensus 233 ~IvF~Gg~L~~~~~l~~~~~~~~~~~~----~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 233 RIVFIGSFLRNNQLLMKVLSYATNFWS----KKALFLEHEGYSGAIGALL 278 (279)
T ss_pred eEEEECCcccCCHHHHHHHHHHHhhcC----ceEEEECCcchHHHhhhcc
Confidence 499999999999999999888776432 1223344445555556553
No 75
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=64.17 E-value=13 Score=36.31 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=30.0
Q ss_pred EEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHh
Q 011283 93 YALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATG 145 (489)
Q Consensus 93 LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~ 145 (489)
|+||+|-||+++++.+- + +++. .|++|++.. .+.+++..++...
T Consensus 2 L~iDiGNT~i~~g~~~~-~---~~~~----~~r~~t~~~-~t~de~~~~l~~~ 45 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSG-N---KVYQ----FWRLATNLM-KTYDEHSEFLKEL 45 (243)
T ss_pred EEEEECCCcEEEEEEEC-C---EEEE----EEEecCCCc-cChHHHHHHHHHH
Confidence 78999999999999973 2 2443 367776654 3566666555443
No 76
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=64.00 E-value=31 Score=35.34 Aligned_cols=100 Identities=12% Similarity=0.263 Sum_probs=51.5
Q ss_pred EEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEee
Q 011283 94 ALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSF 173 (489)
Q Consensus 94 aIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSf 173 (489)
|||+|-.++|++.++..+++..+..-. ..++|......+...=.+.+++.|++++++.+.. ...+-++.
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~--~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~~-------~k~v~~ai-- 69 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFA--SIPLPPGAISDGEIVDPEALAEALKELLKENKIK-------GKKVVLAI-- 69 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEE--EEE--TTSEETTEES-HHHHHHHHHHHHHHHT-----------EEEEEE--
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEE--EEECCCCCccCCCcCCHHHHHHHHHHHHHHcCCC-------CCeEEEEe--
Confidence 799999999999998766543443322 4677766533222123467888888888876632 12233333
Q ss_pred eccccccccceeeeeccceeeec-CCCchHHHHHHHHHHhc
Q 011283 174 PVKQTSIDSGVLIKWTKGFSVSG-TAGKDVVACLNEAMERQ 213 (489)
Q Consensus 174 P~~q~~i~~g~li~wtKgf~~~~-~~G~dv~~lL~~al~~~ 213 (489)
|... .+ +|-+.+|. ....++.+.++-..+++
T Consensus 70 p~~~------vi---~r~i~lP~~m~~~el~~~I~~Ea~~~ 101 (340)
T PF11104_consen 70 PGSS------VI---IRNIRLPAVMPEKELEEAIRWEAEQY 101 (340)
T ss_dssp -GGG-------E---EEEEEEE----HHHHHHHHHHHHGGG
T ss_pred CCCc------EE---EEEEecCCCCCHHHHHHHHHHHHHhh
Confidence 4221 12 23355665 25567777776666543
No 77
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=63.68 E-value=66 Score=35.99 Aligned_cols=55 Identities=16% Similarity=0.214 Sum_probs=33.6
Q ss_pred eecCCCchHHHHHHHHHHhcCcceEeeeeecccccccccccccc--CceEEEEEecCCc
Q 011283 194 VSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD--EDVMVAVILGTGT 250 (489)
Q Consensus 194 ~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~--~~~~iglIlGTG~ 250 (489)
+|..-+..=.+.+.+|.+..|+++ +.++|+.+|++++-.... ....+-+=+|-|+
T Consensus 140 VPa~f~~~qR~a~~~Aa~~AGl~v--~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT 196 (627)
T PRK00290 140 VPAYFNDAQRQATKDAGKIAGLEV--LRIINEPTAAALAYGLDKKGDEKILVYDLGGGT 196 (627)
T ss_pred ECCCCCHHHHHHHHHHHHHcCCce--EEEecchHHHHHHhhhccCCCCEEEEEECCCCe
Confidence 333334445566777776668875 589999999999744322 2334444455554
No 78
>PRK13317 pantothenate kinase; Provisional
Probab=62.69 E-value=6.5 Score=39.36 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=29.2
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhh
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLAS 480 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa 480 (489)
.|++.||-...+|.+++.+.+.++. ...+-+......-.+.+|||+.+.
T Consensus 225 ~Ivf~G~gla~n~~l~~~l~~~l~~----~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 225 NIVYIGSTLTNNPLLQEIIESYTKL----RNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred eEEEECcccccCHHHHHHHHHHHhc----CCceEEecCCCchhHHHHHHHHhh
Confidence 4888887667788888877765532 001112223344566788887764
No 79
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=62.57 E-value=23 Score=31.51 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=18.7
Q ss_pred cccEEEEecCCcceEEEEEEeCC
Q 011283 89 RGLFYALDLGGTNFRVLRVQLGG 111 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~l~g 111 (489)
.+++||||+|=-.+=+|+-+..+
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~~ 25 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPLG 25 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCCC
Confidence 35699999999999898877544
No 80
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=60.80 E-value=12 Score=40.62 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=39.8
Q ss_pred cEEEEecCCcceEEEEEEeC-Cccceeeeccccc---ccccchhhccChHHHHHHHHHhhhhHHHhhcCc
Q 011283 91 LFYALDLGGTNFRVLRVQLG-GQEERVQATEFEQ---VSIPQELMCGTSEELFDFIATGLAKFAEKEAGK 156 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~-g~~~~i~~~~~~~---~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~ 156 (489)
++|+||+|--.-|++++|.. |+ ++.+..+. +.++......++++.+.-+..+|.+.+++.+.+
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~~G~---~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~ 70 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQTGT---LLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVD 70 (544)
T ss_pred EEEEEeecCCceeEEEEEcCCCc---chhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCC
Confidence 57888888888888888875 53 33332211 223333333457778888888888888777653
No 81
>PRK13324 pantothenate kinase; Reviewed
Probab=60.26 E-value=18 Score=35.87 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=29.8
Q ss_pred EEEEecCCcceEEEEEEeCCccceeeecccccccccc-hhhccChHHHHHHHHHhh
Q 011283 92 FYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQ-ELMCGTSEELFDFIATGL 146 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~-~~~~~~~~~lfd~Ia~~i 146 (489)
.|+||+|-||++.++.+- + ++.. .+++++ +.. .+.++++-++...+
T Consensus 2 iL~iDiGNT~ik~gl~~~-~---~~~~----~~r~~t~~~~-~t~de~~~~l~~~~ 48 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG-D---RIVS----QIRYATSSVD-STSDQMGVFLRQAL 48 (258)
T ss_pred EEEEEeCCCceEEEEEEC-C---EEEE----EEEEecCccc-cchHHHHHHHHHHH
Confidence 689999999999999982 2 2443 356665 332 34556555554443
No 82
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=59.85 E-value=7.1 Score=35.04 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=38.3
Q ss_pred cCCCchHHHHHHHHHHhcCcceEeeeeecccc-----ccccccccc-cCceEEEEEecCCcceeEEee
Q 011283 196 GTAGKDVVACLNEAMERQGLDMRVSALVNDTV-----GTLAGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 196 ~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtv-----atlla~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
+-.|.++++.|.+.|+++|+.|.=..- +|.+ +..++++.. +....-=+|+|||+|.++.-|
T Consensus 8 DhaG~~lK~~l~~~L~~~G~eV~D~G~-~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~siaAN 74 (142)
T PRK08621 8 DKAGFELKEVVKDYLEDNKYEVVDVTE-EGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFMVAT 74 (142)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEECCC-CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhhhhhhh
Confidence 345789999999999988877521111 3321 112222222 344455569999999999876
No 83
>CHL00094 dnaK heat shock protein 70
Probab=59.37 E-value=93 Score=34.84 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHhcCcceEeeeeeccccccccccccc--cCceEEEEEecCCc
Q 011283 200 KDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW--DEDVMVAVILGTGT 250 (489)
Q Consensus 200 ~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~--~~~~~iglIlGTG~ 250 (489)
..=.+.+.+|.+..|+++ +.++|+.+|++++-... .....+-+=+|-|+
T Consensus 148 ~~qR~a~~~Aa~~AGl~v--~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT 198 (621)
T CHL00094 148 DSQRQATKDAGKIAGLEV--LRIINEPTAASLAYGLDKKNNETILVFDLGGGT 198 (621)
T ss_pred HHHHHHHHHHHHHcCCce--EEEeccHHHHHHHhccccCCCCEEEEEEcCCCe
Confidence 344566777776668875 68999999999974332 22333334455555
No 84
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=58.75 E-value=46 Score=32.35 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCcceEeeeeeccccccccccccccCceEEEEEecCCcc
Q 011283 204 ACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTN 251 (489)
Q Consensus 204 ~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~N 251 (489)
+.+.++++..|+++ +.++|+..|++++-.. ...+-+=+|.|+-
T Consensus 78 ~a~~~a~~~aGl~~--~~li~ep~Aaa~~~~~---~~~~vvDiGggtt 120 (239)
T TIGR02529 78 KVIVNVIESAGIEV--LHVLDEPTAAAAVLQI---KNGAVVDVGGGTT 120 (239)
T ss_pred HHHHHHHHHcCCce--EEEeehHHHHHHHhcC---CCcEEEEeCCCcE
Confidence 34556666668876 5899999998875221 1224444555543
No 85
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=58.57 E-value=6.9 Score=35.06 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=37.2
Q ss_pred CCCchHHHHHHHHHHhcCcceEeeeeecccc-----ccccccccc-cCceEEEEEecCCcceeEEee
Q 011283 197 TAGKDVVACLNEAMERQGLDMRVSALVNDTV-----GTLAGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 197 ~~G~dv~~lL~~al~~~~l~v~v~ai~NDtv-----atlla~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
-.|.++++.|.+.|+++|+.|.=..- +|++ +..++++-. +....-=+|+|||+|.++.-|
T Consensus 9 h~G~~lK~~i~~~L~~~G~eV~D~G~-~~~~dYpd~a~~va~~V~~~e~~~GIliCGtGiG~siaAN 74 (141)
T TIGR01118 9 LAGKRLKDVIKNFLVDNGFEVIDVTE-GDGQDFVDVTLAVASEVQKDEQNLGIVIDAYGAGSFMVAT 74 (141)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcCC-CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhh
Confidence 45789999999999988887521111 3431 111122222 334444569999999999876
No 86
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=58.22 E-value=19 Score=37.47 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=33.4
Q ss_pred ceEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeeccccc-ccCCCcccccccccc-cccCCcchhhhhhhhchhh
Q 011283 239 DVMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGA-FSKGLPLTEFDRDMD-AASINPGEQIYEKTISGMY 316 (489)
Q Consensus 239 ~~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~-f~~~lp~t~~D~~~D-~~s~~pg~~~~Ek~~SG~y 316 (489)
...+.+=+|-=.|-+|+.+...+-.++- .-|.|++| .|=. +.+ -+||+.-. +.++++....+|++.+-.|
T Consensus 158 ~~~~~lNIGGIaNiT~l~~~~~~~~fDt---GPGN~liD-~~~~~~~~----~~yD~~G~~A~~G~v~~~ll~~ll~~py 229 (364)
T PF03702_consen 158 KPRAVLNIGGIANITFLPPGGDVIGFDT---GPGNMLID-AWIQRHTG----LPYDKDGEWAASGKVNEELLDRLLSHPY 229 (364)
T ss_dssp S-EEEEEESSEEEEEEE-TTS--EEEEE---EESSHHHH-HHHHHHCS-----SS-GGGHHHHCS---HHHHHHHHTSHH
T ss_pred CCEEEEecCCceEEEEecCCCCceeecc---CcHHHHHH-HHHHHHhC----CCcCcCcHhhCcCCCCHHHHHHHhcCcc
Confidence 4578888888889999876544333331 22567777 3322 211 35666322 2244444445555555544
Q ss_pred H
Q 011283 317 L 317 (489)
Q Consensus 317 L 317 (489)
+
T Consensus 230 f 230 (364)
T PF03702_consen 230 F 230 (364)
T ss_dssp H
T ss_pred c
Confidence 4
No 87
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=57.22 E-value=3.9 Score=36.96 Aligned_cols=62 Identities=18% Similarity=0.134 Sum_probs=38.3
Q ss_pred cCCCchHHHHHHHHHHhcCcceEeeee-ecc-c-----cccccccccc-cCceEEEEEecCCcceeEEee
Q 011283 196 GTAGKDVVACLNEAMERQGLDMRVSAL-VND-T-----VGTLAGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 196 ~~~G~dv~~lL~~al~~~~l~v~v~ai-~ND-t-----vatlla~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
+-.|.++++.|.+.|++.|.+|.=..- ..| . .|..++.+.. +....-=+|+|||+|.++.-|
T Consensus 8 DhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaAN 77 (148)
T PRK05571 8 DHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAAN 77 (148)
T ss_pred CCchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHh
Confidence 345789999999999988887621111 112 1 1222223222 444555569999999999776
No 88
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=56.91 E-value=30 Score=32.07 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=32.6
Q ss_pred EEEEecCCcceEEEEEEeCCc-cceeeecccccccccch-hhccChHHHHHHHHHhhhhHHHhh
Q 011283 92 FYALDLGGTNFRVLRVQLGGQ-EERVQATEFEQVSIPQE-LMCGTSEELFDFIATGLAKFAEKE 153 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~g~-~~~i~~~~~~~~~ip~~-~~~~~~~~lfd~Ia~~i~~~~~~~ 153 (489)
|.+||+|-|++++.+.+..++ ..+++... ..|.. +.+|.-.+ .+.++++|.+.+++.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~----~~~s~gi~~G~I~d-~~~~~~~I~~ai~~a 59 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVG----EVPSRGIRKGVIVD-IEAAARAIREAVEEA 59 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEE----EecCCCccCcEEEC-HHHHHHHHHHHHHHH
Confidence 579999999999999987643 23444422 23433 33332222 345556666655543
No 89
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=56.34 E-value=27 Score=36.32 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=21.2
Q ss_pred CccccEEEEecCCcceEEEEEEeCC
Q 011283 87 NERGLFYALDLGGTNFRVLRVQLGG 111 (489)
Q Consensus 87 ~E~G~~LaIDlGGTnlRv~lV~l~g 111 (489)
...+.|||||.|-|+.|+.+++.++
T Consensus 132 ~~~~~~LGID~GSTtTK~VLm~d~~ 156 (396)
T COG1924 132 YQGMYTLGIDSGSTTTKAVLMEDGK 156 (396)
T ss_pred hcCcEEEEEecCCcceeEEEEeCCC
Confidence 3457899999999999999998754
No 90
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=56.31 E-value=35 Score=33.84 Aligned_cols=21 Identities=14% Similarity=0.428 Sum_probs=18.4
Q ss_pred cEEEEecCCcceEEEEEEeCC
Q 011283 91 LFYALDLGGTNFRVLRVQLGG 111 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g 111 (489)
.|++||+|-|+.|+.+++.++
T Consensus 2 ~~~GIDiGStttK~Vlid~~~ 22 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDG 22 (262)
T ss_pred eEEEEEcCcccEEEEEEecCC
Confidence 479999999999999998644
No 91
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=56.00 E-value=32 Score=34.71 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=17.6
Q ss_pred ccEEEEecCCcceEEEEEE
Q 011283 90 GLFYALDLGGTNFRVLRVQ 108 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~ 108 (489)
-.|+|||+|-|+.|+++++
T Consensus 32 m~~~GIDiGStt~K~Vlld 50 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVC 50 (293)
T ss_pred cEEEEEEeCchhEEEEEEe
Confidence 4689999999999999998
No 92
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=55.32 E-value=44 Score=36.33 Aligned_cols=63 Identities=27% Similarity=0.295 Sum_probs=40.8
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhc-cC-hHHHHHHHHHhhhhHHHh
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMC-GT-SEELFDFIATGLAKFAEK 152 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~i~~~~~~ 152 (489)
..|-+||+|-.++|..+++..++..+++....+..++...+.. +. .++-.+...+++..|.+.
T Consensus 6 ~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~ 70 (496)
T PRK11031 6 SLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAER 70 (496)
T ss_pred CEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 3577999999999999999854433444433333445433321 11 257778888899888654
No 93
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=54.67 E-value=11 Score=34.15 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=37.2
Q ss_pred CCCchHHHHHHHHHHhcCcceEeeeee-cc-cc-----ccccccccc-cCceEEEEEecCCcceeEEee
Q 011283 197 TAGKDVVACLNEAMERQGLDMRVSALV-ND-TV-----GTLAGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 197 ~~G~dv~~lL~~al~~~~l~v~v~ai~-ND-tv-----atlla~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
-.|.++++.|.+.|+++|+.|.=.... .| .. +..++++.. +....-=+|+|||+|.++.-|
T Consensus 9 haG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~siaAN 77 (148)
T TIGR02133 9 HAGFEYKEALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGEAIAAN 77 (148)
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCCChhheeeec
Confidence 357899999999999888765211111 11 11 122333332 333444459999999999886
No 94
>PRK10854 exopolyphosphatase; Provisional
Probab=53.99 E-value=43 Score=36.55 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=41.1
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccC--hHHHHHHHHHhhhhHHHh
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGT--SEELFDFIATGLAKFAEK 152 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~--~~~lfd~Ia~~i~~~~~~ 152 (489)
.|-+||+|-.++|..+++..++..+++....+..++...+.... .++-.+...+++..|...
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~ 75 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAER 75 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999986543345544333344444332211 257788888888888654
No 95
>PRK13326 pantothenate kinase; Reviewed
Probab=53.67 E-value=22 Score=35.27 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=31.2
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHH
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIAT 144 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~ 144 (489)
..|+||+|-||+++++.+- + +++. .|+++++.. .+.++++.++..
T Consensus 7 ~~L~IDiGNT~ik~glf~~-~---~l~~----~~r~~t~~~-~t~de~~~~l~~ 51 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKD-N---KMQI----FCKLKTKLD-LSFDELYSFLKE 51 (262)
T ss_pred EEEEEEeCCCeEEEEEEEC-C---EEEE----EEEeccCCC-CCHHHHHHHHhc
Confidence 3699999999999999983 3 2443 366665543 356777766654
No 96
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=53.48 E-value=25 Score=35.88 Aligned_cols=126 Identities=19% Similarity=0.311 Sum_probs=72.3
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCcccc-----CC----
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHL-----PQ---- 161 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~-----~~---- 161 (489)
..+|||+|-+.+|++-+.-.|+.+.+.. .-..++|..+.....-.=.+.+++.|++.+.++++.... +.
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kLe~--y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k~aa~AVP~s~ai 88 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKLEK--YASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSKNAATAVPGSAAI 88 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceeeee--eeecccCccccccCCcccHHHHHHHHHHHHHhcCcchhhhhhhcCcccee
Confidence 3689999999999988875565433322 224688888775433344677888888888876643210 00
Q ss_pred Cc-----------------eeeeeeEEeeeccccccccceeeeeccc---eeeec-CCCchHHHHHHHHHHhcCcceE
Q 011283 162 GR-----------------QREIGFTFSFPVKQTSIDSGVLIKWTKG---FSVSG-TAGKDVVACLNEAMERQGLDMR 218 (489)
Q Consensus 162 ~~-----------------~~~lG~tfSfP~~q~~i~~g~li~wtKg---f~~~~-~~G~dv~~lL~~al~~~~l~v~ 218 (489)
.+ ....+--+|||++..+++--.+-....+ ..+-= ..-+++++...++|+..|+...
T Consensus 89 tk~i~vp~~lde~eL~~~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~ 166 (354)
T COG4972 89 TKTIPVPDELDEKELEDQVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPK 166 (354)
T ss_pred eEEeccCCcccHHHHHHHHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcCCCce
Confidence 00 0233556778876655432222111111 00000 1236788888888887788653
No 97
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=52.51 E-value=49 Score=35.98 Aligned_cols=77 Identities=17% Similarity=0.252 Sum_probs=44.9
Q ss_pred eehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccC
Q 011283 390 EVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKD 469 (489)
Q Consensus 390 ~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~D 469 (489)
.++++|++-.|..+...+-.+....+.. . ..|.+.||-.+. +.+.+.+...+ + ..|.+....+
T Consensus 374 ~l~ravlEgva~~l~~~~~~l~~~~g~~-------~-~~i~~~GGgars-~~w~Qi~Ad~~----g----~~v~~~~~~e 436 (502)
T COG1070 374 HLARAVLEGVAFALADGLEALEELGGKP-------P-SRVRVVGGGARS-PLWLQILADAL----G----LPVVVPEVEE 436 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-------c-cEEEEECCcccC-HHHHHHHHHHc----C----CeeEecCccc
Confidence 5677888876666666666665554541 1 135455554443 66666655432 2 2455555567
Q ss_pred CcchhHHHHhhccc
Q 011283 470 GSGIGAALLASANS 483 (489)
Q Consensus 470 gs~iGAA~~aa~~~ 483 (489)
++..|+|++++.+.
T Consensus 437 ~~a~g~A~~~~~~~ 450 (502)
T COG1070 437 AGALGGAALAAAAL 450 (502)
T ss_pred chHHHHHHHHHHHh
Confidence 88777777766543
No 98
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=52.34 E-value=19 Score=38.12 Aligned_cols=38 Identities=21% Similarity=0.115 Sum_probs=24.1
Q ss_pred eeeccccccccccccccCceEEEEEecCCcceeEEeecc
Q 011283 221 ALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVEQMD 259 (489)
Q Consensus 221 ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie~~~ 259 (489)
.|=-|++|.+++.... ......+.+-=|||+=.+...+
T Consensus 146 fVG~DivAgl~a~~~~-~~~~~~LliDiGTNgEivL~~~ 183 (412)
T PF14574_consen 146 FVGADIVAGLLATGMD-ESDEPSLLIDIGTNGEIVLGNG 183 (412)
T ss_dssp TB-HHHHHHHHHHTCC-C-SS-EEEEEESSCEEEEEE-S
T ss_pred cccHHHHHHHHhcCcc-cCCCcEEEEEecCCeEEEEecC
Confidence 4667999988886542 2333567777788888887654
No 99
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=51.90 E-value=10 Score=33.94 Aligned_cols=60 Identities=10% Similarity=0.137 Sum_probs=37.2
Q ss_pred cCCCchHHHHHHHHHHhcCcceEeeeeeccc-----cccccccccc-cCceEEEEEecCCcceeEEee
Q 011283 196 GTAGKDVVACLNEAMERQGLDMRVSALVNDT-----VGTLAGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 196 ~~~G~dv~~lL~~al~~~~l~v~v~ai~NDt-----vatlla~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
+-.|.++++.|.+.|++.|+.|. -+-.++ .+..++++.. +....-=+|+|||+|.++.-|
T Consensus 8 DhaG~~lK~~l~~~L~~~g~eV~--D~G~~~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~siaAN 73 (141)
T PRK12613 8 DAHGNALKELIKSFLQEEGYDII--DVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVAT 73 (141)
T ss_pred CcchHHHHHHHHHHHHHCCCEEE--EcCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhh
Confidence 34578999999999998887651 222221 1111222222 333444459999999999876
No 100
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=50.64 E-value=17 Score=37.10 Aligned_cols=20 Identities=25% Similarity=0.606 Sum_probs=17.3
Q ss_pred EEEecCCcceEEEEEEeCCc
Q 011283 93 YALDLGGTNFRVLRVQLGGQ 112 (489)
Q Consensus 93 LaIDlGGTnlRv~lV~l~g~ 112 (489)
|++|+||-|+|+++++-.|.
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~ 20 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGR 20 (318)
T ss_pred CccccccceeeeEEecCCCc
Confidence 58999999999999976664
No 101
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=49.23 E-value=14 Score=40.03 Aligned_cols=77 Identities=10% Similarity=0.208 Sum_probs=43.7
Q ss_pred eehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccC
Q 011283 390 EVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKD 469 (489)
Q Consensus 390 ~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~D 469 (489)
.++++|++=-|..+...+-.+....+. ....|.+.||.. +.+.+.+.+...+ ...|++....+
T Consensus 374 ~l~rAvlEgia~~~~~~~~~~~~~~g~--------~~~~i~~~GGga-~s~~w~Qi~Adv~--------g~pv~~~~~~e 436 (505)
T TIGR01314 374 HMIRAALEGVIYNLYTVALALVEVMGD--------PLNMIQATGGFA-SSEVWRQMMSDIF--------EQEIVVPESYE 436 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCcEEEEecCcc-cCHHHHHHHHHHc--------CCeeEecCCCC
Confidence 456666665444444444444333332 111355555554 5577766665533 22455555568
Q ss_pred CcchhHHHHhhccc
Q 011283 470 GSGIGAALLASANS 483 (489)
Q Consensus 470 gs~iGAA~~aa~~~ 483 (489)
++.+|||++|+++.
T Consensus 437 ~~a~GaA~la~~~~ 450 (505)
T TIGR01314 437 SSCLGACILGLKAL 450 (505)
T ss_pred cchHHHHHHHHHhc
Confidence 99999999998754
No 102
>PRK13320 pantothenate kinase; Reviewed
Probab=48.56 E-value=34 Score=33.52 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=16.4
Q ss_pred EEEEecCCcceEEEEEE
Q 011283 92 FYALDLGGTNFRVLRVQ 108 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~ 108 (489)
+|.||+|.|++|.++++
T Consensus 4 ~L~iDiGNT~ik~~~~~ 20 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFE 20 (244)
T ss_pred EEEEEeCCCcEEEEEEE
Confidence 79999999999999998
No 103
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=46.76 E-value=65 Score=28.89 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=18.5
Q ss_pred ccEEEEecCCcceEEEEEEeCC
Q 011283 90 GLFYALDLGGTNFRVLRVQLGG 111 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g 111 (489)
+++||+|+|--.+=||+-+..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 4689999999999999977644
No 104
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=43.40 E-value=20 Score=39.09 Aligned_cols=38 Identities=24% Similarity=0.020 Sum_probs=26.1
Q ss_pred cCcc--eEeeeeeccccccccccccccCceEEEEEecCCcc
Q 011283 213 QGLD--MRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTN 251 (489)
Q Consensus 213 ~~l~--v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~N 251 (489)
.|++ +.|++-.-|+.+++++.--..+.. +.+++||+.-
T Consensus 229 ~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~-~~~~~GTs~~ 268 (520)
T PRK10939 229 TGLRAGTPVVMGGGDVQLGCLGLGVVRPGQ-TAVLGGTFWQ 268 (520)
T ss_pred hCCCCCCcEEEeCchHHHHHhhcCcccCCc-EEEeecCcce
Confidence 3663 556777789999999855444443 6688888743
No 105
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=43.38 E-value=11 Score=34.91 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=37.5
Q ss_pred CCCchHHHHHHHHHHhcCcceE-eeeeecccc-----ccccccccc-cCceEEEEEecCCcceeEEee
Q 011283 197 TAGKDVVACLNEAMERQGLDMR-VSALVNDTV-----GTLAGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 197 ~~G~dv~~lL~~al~~~~l~v~-v~ai~NDtv-----atlla~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
-.|.++++.|.+.|+++|.+|. +-.-.+|++ +..++.+.. +....-=+|+|||+|.++.-|
T Consensus 9 haG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGTGiG~siaAN 76 (171)
T TIGR01119 9 HIVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGTGVGINNAVN 76 (171)
T ss_pred CchHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHh
Confidence 4578999999999998888762 111111221 112222222 344455569999999999776
No 106
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=43.34 E-value=9.8 Score=35.21 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=38.2
Q ss_pred cCCCchHHHHHHHHHHhcCcceE-eeeeecccc-----ccccccccc-cCceEEEEEecCCcceeEEee
Q 011283 196 GTAGKDVVACLNEAMERQGLDMR-VSALVNDTV-----GTLAGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 196 ~~~G~dv~~lL~~al~~~~l~v~-v~ai~NDtv-----atlla~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
+-.|.++++.|.+.|++.|..|. +-.-.+|++ |..++++.. +....-=+|+|||+|.++.-|
T Consensus 8 DhaG~~lK~~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaAN 76 (171)
T PRK08622 8 DHIVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGTGVGISNAVN 76 (171)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCcEEEEEcCCcHHHHHHHh
Confidence 34578999999999998887752 111112321 112222222 344555569999999999776
No 107
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=42.90 E-value=11 Score=35.00 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=38.3
Q ss_pred cCCCchHHHHHHHHHHhcCcceE-eeeeecccc-----ccccccccc-cCceEEEEEecCCcceeEEee
Q 011283 196 GTAGKDVVACLNEAMERQGLDMR-VSALVNDTV-----GTLAGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 196 ~~~G~dv~~lL~~al~~~~l~v~-v~ai~NDtv-----atlla~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
+-.|.++++.|.+.|+..|..|. +-.-.+|++ +..++++.. +....-=+|+|||+|.++.-|
T Consensus 8 DhaG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaAN 76 (171)
T PRK12615 8 DHIVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGTGVGINNAVN 76 (171)
T ss_pred CchhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHh
Confidence 34578999999999998888752 111111221 112222222 444566679999999999776
No 108
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=42.78 E-value=21 Score=38.17 Aligned_cols=37 Identities=27% Similarity=0.208 Sum_probs=26.6
Q ss_pred Ccc--eEeeeeeccccccccccccccCceEEEEEecCCcc
Q 011283 214 GLD--MRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTN 251 (489)
Q Consensus 214 ~l~--v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~N 251 (489)
|++ +.|++-.-|..+++++.--.. ...+.+++||+.-
T Consensus 223 Gl~~g~pV~~g~~D~~aa~~g~g~~~-~g~~~~~~GTs~~ 261 (481)
T TIGR01312 223 GLSAGVPVAAGGGDNAAGAIGTGTVD-PGDAMMSLGTSGV 261 (481)
T ss_pred CCCCCCeEEecchHHHHHhhCCCccc-CCcEEEEecCceE
Confidence 654 556777899999888764322 4678899999854
No 109
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=42.23 E-value=46 Score=29.63 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=39.9
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEA 154 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~ 154 (489)
+..||+|=|+..+++++...+...++...+.+++.++... +.+++=+| ...+..+++.++
T Consensus 2 ~vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~l~~~~---~~~~vr~F-q~~f~kl~~dy~ 61 (138)
T PF11215_consen 2 KVCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFSLSDDN---STEEVRKF-QFTFAKLMEDYK 61 (138)
T ss_pred eEEEEEEecCeEEEEEEecCCCceECCccceeEEEcCCCc---cHHHHHHH-HHHHHHHHHHcC
Confidence 3679999999999999998766556666665677777653 33333333 344566666554
No 110
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=41.38 E-value=12 Score=33.62 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=37.8
Q ss_pred cCCCchHHHHHHHHHHhcCcceE-eeeeecccc-----ccccccccc-cCceEEEEEecCCcceeEEee
Q 011283 196 GTAGKDVVACLNEAMERQGLDMR-VSALVNDTV-----GTLAGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 196 ~~~G~dv~~lL~~al~~~~l~v~-v~ai~NDtv-----atlla~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
+-.|.++++.|.+.|+++|..|. +-.-.+|.+ +-.++.+.. +....-=+|+|||+|.++.-|
T Consensus 7 DhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~siaAN 75 (143)
T TIGR01120 7 DHAGFILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICGTGIGMSIAAN 75 (143)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcCCcHHHHHHHh
Confidence 34578999999999998887652 111122321 111122222 344555569999999999776
No 111
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=40.55 E-value=23 Score=38.43 Aligned_cols=46 Identities=28% Similarity=0.533 Sum_probs=29.2
Q ss_pred EEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhccc
Q 011283 429 VAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANS 483 (489)
Q Consensus 429 I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~ 483 (489)
|.+.||.. +.+.+.+.+...+ + ..|.+....+++.+|||++|+++.
T Consensus 410 i~~~GG~a-~s~~w~Qi~Adv~----g----~pV~~~~~~e~~alGaAl~aa~a~ 455 (504)
T PTZ00294 410 LRVDGGLT-KNKLLMQFQADIL----G----KDIVVPEMAETTALGAALLAGLAV 455 (504)
T ss_pred EEEecccc-cCHHHHHHHHHHh----C----CceEecCcccchHHHHHHHHHhhc
Confidence 55566665 4555665554432 2 245544456789999999998764
No 112
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=40.45 E-value=1e+02 Score=27.78 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=19.2
Q ss_pred cEEEEecCCcceEEEEEEeCCc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQ 112 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~ 112 (489)
++||||.|-+|+=+++++..++
T Consensus 1 rILGIDPGl~~~G~av~~~~~~ 22 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGR 22 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCC
Confidence 4799999999999999987654
No 113
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=39.45 E-value=4.8e+02 Score=27.51 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=17.9
Q ss_pred ccEEEEecCCcceEEEEEEeC
Q 011283 90 GLFYALDLGGTNFRVLRVQLG 110 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~ 110 (489)
..+.|||+|-|++++.+.++.
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~ 28 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVL 28 (420)
T ss_pred CEEEEEEcccceEEEEEEEEc
Confidence 358899999999999987764
No 114
>KOG1903 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.89 E-value=26 Score=31.95 Aligned_cols=82 Identities=20% Similarity=0.249 Sum_probs=48.8
Q ss_pred cCcCCCccccEEEEecC----------CcceEEEE-----EEeCCccceeeecccccccccchhhccC-hHHHHHHHHHh
Q 011283 82 ALPTGNERGLFYALDLG----------GTNFRVLR-----VQLGGQEERVQATEFEQVSIPQELMCGT-SEELFDFIATG 145 (489)
Q Consensus 82 ~lP~G~E~G~~LaIDlG----------GTnlRv~l-----V~l~g~~~~i~~~~~~~~~ip~~~~~~~-~~~lfd~Ia~~ 145 (489)
+||.|..-..++|+.+= ||---+|- +--+|.+++-..+...+|+-|+.+.... -+-|.|||-..
T Consensus 50 ~LPpgEn~nDW~AVHvVDFFNRiNLiYGTise~Cte~sCP~MsGG~rYEY~WqD~~~ykkPt~L~Ap~Ym~lLMDWIE~~ 129 (217)
T KOG1903|consen 50 RLPPGENLNDWLAVHVVDFFNRINLIYGTISEFCTETSCPVMSGGPRYEYRWQDERKYKKPTALSAPRYMALLMDWIEVQ 129 (217)
T ss_pred cCCCCCCccceeeeehhhhhhhhHhhhhhHhhhccccCCCcccCCCcceeEecccccccCCccCCcHHHHHHHHHHHHHh
Confidence 68999998999887542 33222221 1123444455666666788887763211 24567777554
Q ss_pred hhhHHHhhcCccccCCCceeeeeeEEeeecc
Q 011283 146 LAKFAEKEAGKFHLPQGRQREIGFTFSFPVK 176 (489)
Q Consensus 146 i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~ 176 (489)
|.+ ++..|...+.|||-+
T Consensus 130 INn-------------E~vFPt~~~vpFPKn 147 (217)
T KOG1903|consen 130 INN-------------EEVFPTSVGVPFPKN 147 (217)
T ss_pred ccc-------------cccccccCCCCCcHh
Confidence 422 356888888888843
No 115
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=38.88 E-value=24 Score=34.44 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=24.9
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEE-eccCCcchhHHHH
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIE-HTKDGSGIGAALL 478 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~-~a~Dgs~iGAA~~ 478 (489)
.|.+.||+.. ++.+.+.+.+.+.. .+.+. .+...+.+|||++
T Consensus 206 ~Vvl~GGva~-n~~l~~~l~~~lg~--------~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 206 PIVFTGGVSK-NKGLVKALEKKLGM--------KVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CEEEECcccc-CHHHHHHHHHHhCC--------cEEcCCCccHHHHHHHHhC
Confidence 3888888776 66777777665521 22221 2234577888763
No 116
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=38.18 E-value=57 Score=28.64 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=14.7
Q ss_pred EEEecCCcceEEEEEEeCC
Q 011283 93 YALDLGGTNFRVLRVQLGG 111 (489)
Q Consensus 93 LaIDlGGTnlRv~lV~l~g 111 (489)
||||+|-..+=+|+-+..+
T Consensus 1 laiD~G~kriGvA~~d~~~ 19 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITG 19 (130)
T ss_pred CeEccCCCeEEEEEECCCC
Confidence 6899999988888765533
No 117
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=36.54 E-value=41 Score=36.79 Aligned_cols=42 Identities=24% Similarity=0.139 Sum_probs=29.0
Q ss_pred hcCcc--eEeeeeeccccccccccccccCceEEEEEecCCcceeE
Q 011283 212 RQGLD--MRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACY 254 (489)
Q Consensus 212 ~~~l~--v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~y 254 (489)
+.|++ +.|++=.-|+.+++++.--..+ ..+.+++||+.-..+
T Consensus 255 ~~GL~~g~pV~~g~~D~~aa~~g~g~~~~-g~~~~~~GTs~~~~~ 298 (536)
T TIGR01234 255 RTGLPEGVVVAVGNFDAHVGAVAAGIAQP-GALVKIMGTSTCHVL 298 (536)
T ss_pred HhCCCCCCeEEecchhHhhhhhccccccC-CcEEEEEccceEEEE
Confidence 33664 5567888999999998654333 457799999854333
No 118
>PRK15027 xylulokinase; Provisional
Probab=35.63 E-value=52 Score=35.44 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=26.7
Q ss_pred cCcc-eEeeeeeccccccccccccccCceEEEEEecCCc
Q 011283 213 QGLD-MRVSALVNDTVGTLAGARYWDEDVMVAVILGTGT 250 (489)
Q Consensus 213 ~~l~-v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~ 250 (489)
.|++ +.|++-..|+.+++++.--.. ...+.+++||+.
T Consensus 220 ~GL~~~pV~~g~~D~~aa~~g~g~~~-~g~~~~s~GTs~ 257 (484)
T PRK15027 220 WGMATVPVVAGGGDNAAGAVGVGMVD-ANQAMLSLGTSG 257 (484)
T ss_pred hCCCCCeEEecccHHHHHHhccCccc-CCcEEEEecCce
Confidence 3654 556778889999999754433 467888999974
No 119
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=35.38 E-value=28 Score=37.60 Aligned_cols=77 Identities=16% Similarity=0.262 Sum_probs=44.3
Q ss_pred eehhhhhhcCCccccchhhHHHHhhhcc-CCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEecc
Q 011283 390 EVCDTIVKRGGRLAGAGIVSILQKIDED-SNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTK 468 (489)
Q Consensus 390 ~ia~~V~~RaA~l~aa~laaii~~~~~~-~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~ 468 (489)
.++++|++ -+|..+..++..+... .. ....|.+.||.. +.+.+.+.+...+. ..|......
T Consensus 372 ~l~rAvlE----gia~~~~~~~~~l~~~~g~-----~~~~i~~~GGga-~s~~w~Qi~ADv~g--------~pv~~~~~~ 433 (493)
T TIGR01311 372 HIARAALE----AIAFQTRDVLEAMEKDAGV-----EITKLRVDGGMT-NNNLLMQFQADILG--------VPVVRPKVT 433 (493)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHhcCC-----CCceEEEecccc-cCHHHHHHHHHhcC--------CeeEecCCC
Confidence 46666666 3444455555555321 10 112355666644 67777776655331 235444457
Q ss_pred CCcchhHHHHhhcccc
Q 011283 469 DGSGIGAALLASANSK 484 (489)
Q Consensus 469 Dgs~iGAA~~aa~~~~ 484 (489)
+++.+|||++|+++.-
T Consensus 434 e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 434 ETTALGAAYAAGLAVG 449 (493)
T ss_pred cchHHHHHHHHHhhcC
Confidence 8999999999987653
No 120
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=34.42 E-value=91 Score=31.33 Aligned_cols=61 Identities=28% Similarity=0.312 Sum_probs=38.0
Q ss_pred EEEEecCCcceEEEEEEeCCccceeeecccccccccchhhc-cC-hHHHHHHHHHhhhhHHHh
Q 011283 92 FYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMC-GT-SEELFDFIATGLAKFAEK 152 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~i~~~~~~ 152 (489)
|-+||+|-.++|..+++..+....++.......++...+.. +. .++-.+.+.+++.+|.+.
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~ 64 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAEL 64 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999854333344333223444443321 11 246667777888888654
No 121
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=33.34 E-value=30 Score=35.41 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=18.4
Q ss_pred cccEEEEecCCcceEEEEEEe
Q 011283 89 RGLFYALDLGGTNFRVLRVQL 109 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~l 109 (489)
.+..|.+|+|||+..+++|.-
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred CCCEEEEEcCccceeeEEecC
Confidence 566999999999999999863
No 122
>PRK00047 glpK glycerol kinase; Provisional
Probab=33.20 E-value=35 Score=36.92 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=30.0
Q ss_pred EEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhccc
Q 011283 429 VAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANS 483 (489)
Q Consensus 429 I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~ 483 (489)
|.+.||. .+.+.+.+.+...+. ..|......+++.+|||++|+++.
T Consensus 407 i~~~GGg-a~s~~w~Qi~ADvlg--------~pV~~~~~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 407 LRVDGGA-VANNFLMQFQADILG--------VPVERPVVAETTALGAAYLAGLAV 452 (498)
T ss_pred EEEecCc-ccCHHHHHHHHHhhC--------CeeEecCcccchHHHHHHHHhhhc
Confidence 5455553 467777776655432 245544456889999999998764
No 123
>PF13941 MutL: MutL protein
Probab=33.04 E-value=92 Score=33.54 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=35.1
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHH
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAE 151 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~ 151 (489)
.||.+|+|.|..|+.+|++.....+++.+- .-|+++. + .++..-+-++++++.+
T Consensus 1 ~~L~~DiGST~Tk~~l~d~~~~~~~~ig~a----~apTTv~--~-~Dv~~G~~~A~~~l~~ 54 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDLVDGEPRLIGQA----EAPTTVE--P-GDVTIGLNNALEQLEE 54 (457)
T ss_pred CEEEEEeCCcceEEeEEeccCCccEEEEEE----eCCCCcC--c-ccHHHHHHHHHHHHHH
Confidence 379999999999999999654445666643 3455542 1 3455555555555544
No 124
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.73 E-value=34 Score=38.69 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.3
Q ss_pred CCccccEEEEecCCcceEEEEEEe
Q 011283 86 GNERGLFYALDLGGTNFRVLRVQL 109 (489)
Q Consensus 86 G~E~G~~LaIDlGGTnlRv~lV~l 109 (489)
|...|..+++|+|||+..++++.-
T Consensus 274 g~~~g~~i~~DmGGTStDva~i~~ 297 (674)
T COG0145 274 GLKAGNAIVFDMGGTSTDVALIID 297 (674)
T ss_pred ccccCCEEEEEcCCcceeeeeeec
Confidence 555557999999999999999874
No 125
>PRK13317 pantothenate kinase; Provisional
Probab=32.66 E-value=39 Score=33.82 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.0
Q ss_pred ccEEEEecCCcceEEEEEEeCC
Q 011283 90 GLFYALDLGGTNFRVLRVQLGG 111 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g 111 (489)
++.++||+|||..|+++++.++
T Consensus 2 ~~~iGIDiGstt~K~v~~~~~~ 23 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEEKK 23 (277)
T ss_pred CceEEEEeCcccEEEEEEcCCC
Confidence 4679999999999999988644
No 126
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=32.62 E-value=1.3e+02 Score=27.07 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=29.6
Q ss_pred EEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhc
Q 011283 92 FYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEA 154 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~ 154 (489)
.||||-|-++.-.++++..++....+... ..+++.. .+..+=+..|.+.+.++++++.
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G--~I~t~~~---~~~~~Rl~~I~~~l~~li~~~~ 58 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYG--TIKTSSK---DSLPERLKEIYEELEELIEEYN 58 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEE--EEE---S-----HHHHHHHHHHHHHHHHHHH-
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeC--eEECCCC---CCHHHHHHHHHHHHHHHHHhhC
Confidence 48999999999999999866533333221 1222221 1122333455566666666554
No 127
>PRK04123 ribulokinase; Provisional
Probab=32.53 E-value=34 Score=37.56 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=29.5
Q ss_pred cCcc--eEeeeeeccccccccccccccCceEEEEEecCCcceeEE
Q 011283 213 QGLD--MRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYV 255 (489)
Q Consensus 213 ~~l~--v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yi 255 (489)
.|++ +.|++-.-|+.|++++.-- . ...+.+++||+.-...+
T Consensus 260 ~GL~~g~pV~~g~~D~~aa~~G~g~-~-~g~~~~~~GTs~~~~~~ 302 (548)
T PRK04123 260 LGLPEGVAVSVGAFDAHMGAVGAGA-E-PGTLVKVMGTSTCDILL 302 (548)
T ss_pred hCCCCCCeEEecchhhhhhhcccCc-C-CCcEEEEecCceEEEEe
Confidence 3664 6678999999999998754 3 34568899998544333
No 128
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=32.41 E-value=88 Score=29.94 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=23.6
Q ss_pred CCCccccEEEEecCCcceEEEEEEeCCc
Q 011283 85 TGNERGLFYALDLGGTNFRVLRVQLGGQ 112 (489)
Q Consensus 85 ~G~E~G~~LaIDlGGTnlRv~lV~l~g~ 112 (489)
.-++...++++|||-.++-..++|.+++
T Consensus 24 ~ad~sk~~vGVDLGT~~iV~~vlD~d~~ 51 (277)
T COG4820 24 AADESKLWVGVDLGTCDIVSMVLDRDGQ 51 (277)
T ss_pred ccccCceEEEeecccceEEEEEEcCCCC
Confidence 3456678999999999999999988775
No 129
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=32.41 E-value=38 Score=37.33 Aligned_cols=56 Identities=21% Similarity=0.279 Sum_probs=33.2
Q ss_pred eeecCCCchHHHHHHHHHHhcCcceEeeeeecccccccccccccc---CceEEEEEecCCc
Q 011283 193 SVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD---EDVMVAVILGTGT 250 (489)
Q Consensus 193 ~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~---~~~~iglIlGTG~ 250 (489)
.+|..-+..=.+.+.+|.+..|+++ +.++|+.+|++++-.... ....+-+=+|-|+
T Consensus 141 tVPa~~~~~qr~~~~~Aa~~agl~~--~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt 199 (602)
T PF00012_consen 141 TVPAYFTDEQRQALRDAAELAGLNV--LRLINEPTAAALAYGLERSDKGKTVLVVDFGGGT 199 (602)
T ss_dssp EE-TT--HHHHHHHHHHHHHTT-EE--EEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSE
T ss_pred eechhhhhhhhhccccccccccccc--ceeecccccccccccccccccccceeccccccce
Confidence 3444334456777888887778865 589999999988743322 2344444456554
No 130
>PRK10331 L-fuculokinase; Provisional
Probab=32.37 E-value=31 Score=37.05 Aligned_cols=38 Identities=24% Similarity=0.095 Sum_probs=26.0
Q ss_pred hcCcc--eEeeeeeccccccccccccccCceEEEEEecCCcc
Q 011283 212 RQGLD--MRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTN 251 (489)
Q Consensus 212 ~~~l~--v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~N 251 (489)
+.|++ +.|++=.-|+.+++++.-- . ...+.+++||..-
T Consensus 225 ~~GL~~g~pV~~g~~D~~aa~~g~g~-~-~g~~~~~~GT~~~ 264 (470)
T PRK10331 225 LLGLPVGIPVISAGHDTQFALFGSGA-G-QNQPVLSSGTWEI 264 (470)
T ss_pred HhCCCCCCeEEEccccHHHHHhCCCC-C-CCCEEEecchhhh
Confidence 34765 6677889999999887653 2 3346678887743
No 131
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=32.24 E-value=40 Score=33.80 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.9
Q ss_pred cccEEEEecCCcceEEEEEEeCCc
Q 011283 89 RGLFYALDLGGTNFRVLRVQLGGQ 112 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~l~g~ 112 (489)
...|++||=|.||||+-+++-+|.
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~dg~ 27 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGDGA 27 (306)
T ss_pred CceEEEEecCCccEEEEEEcCCcc
Confidence 357999999999999999988764
No 132
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=31.97 E-value=22 Score=32.30 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=37.0
Q ss_pred cCCCchHHHHHHHHHHh--cCcceE-eeeeecccc-----ccccccccc-cCceEEEEEecCCcceeEEee
Q 011283 196 GTAGKDVVACLNEAMER--QGLDMR-VSALVNDTV-----GTLAGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 196 ~~~G~dv~~lL~~al~~--~~l~v~-v~ai~NDtv-----atlla~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
+-.|.++++.|.+.|++ +|..|. +-.-.+|++ +..++++.. +....-=+|+|||+|.++.-+
T Consensus 10 DhaG~~lK~~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~GIliCGtGiG~siaAN 80 (151)
T PTZ00215 10 DHAGFDLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGSGIGISIAAN 80 (151)
T ss_pred CCchHHHHHHHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEEcCCcHHHHHHHh
Confidence 34578999999999998 787651 111112221 111122222 344455569999999999776
No 133
>PRK13331 pantothenate kinase; Reviewed
Probab=31.18 E-value=47 Score=32.74 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=18.8
Q ss_pred ccccEEEEecCCcceEEEEEE
Q 011283 88 ERGLFYALDLGGTNFRVLRVQ 108 (489)
Q Consensus 88 E~G~~LaIDlGGTnlRv~lV~ 108 (489)
++-..|+||+|-||+++++.+
T Consensus 5 ~~~~~L~iDiGNT~~~~g~f~ 25 (251)
T PRK13331 5 TSNEWLALMIGNSRLHWGYFS 25 (251)
T ss_pred CCCcEEEEEeCCCcEEEEEEE
Confidence 455689999999999999998
No 134
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=30.98 E-value=67 Score=24.23 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=27.3
Q ss_pred ccchhhHHHHHhhhcCChhHHHHHHHHHhHhhhc
Q 011283 30 VSVAPILTKLQKECAAPLPVLRNVADAMTADMRA 63 (489)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~ 63 (489)
..++++++.+.+.|.++.+++++=+..|..+|.+
T Consensus 30 ~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~ 63 (68)
T PF05402_consen 30 RTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLRE 63 (68)
T ss_dssp S-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999888899888864
No 135
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=30.94 E-value=82 Score=31.07 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=29.3
Q ss_pred EEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHH
Q 011283 92 FYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIAT 144 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~ 144 (489)
+|.||+|-|++..++.+ ++ .+.. .|++.++... +.+++..++.+
T Consensus 2 ~L~iDiGNT~~~~a~~~-~~---~~~~----~~r~~t~~~~-~~del~~~~~~ 45 (251)
T COG1521 2 LLLIDIGNTRIVFALYE-GG---KVVQ----TWRLATEDLL-TEDELGLQLHN 45 (251)
T ss_pred eEEEEeCCCeEEEEEec-CC---eEEE----EEeecccccc-cHHHHHHHHHH
Confidence 68999999999999997 33 2443 4677765432 34555555543
No 136
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=30.78 E-value=53 Score=35.75 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=44.8
Q ss_pred cccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhc
Q 011283 402 LAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASA 481 (489)
Q Consensus 402 l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~ 481 (489)
-++-.+.-|+..++.... .+-.++.++||+.+ ++.|.+....-+. ..|.+-.--|..++|||+++++
T Consensus 395 ai~fqtr~Il~am~~~~~----~~i~~L~~~GG~s~-N~ll~Q~~ADi~g--------~pv~~p~~~e~~~~GaA~l~~~ 461 (516)
T KOG2517|consen 395 AIAFQTREILEAMERDGG----HPISTLRVCGGLSK-NPLLMQLQADILG--------LPVVRPQDVEAVALGAAMLAGA 461 (516)
T ss_pred HHHHHHHHHHHHHHHhcC----CCcceeeecccccc-CHHHHHHHHHHhC--------CccccccchhHHHHHHHHHHHh
Confidence 455566667776665331 01235889999876 6677777665432 1233333346689999999998
Q ss_pred cccc
Q 011283 482 NSKF 485 (489)
Q Consensus 482 ~~~~ 485 (489)
++..
T Consensus 462 a~~~ 465 (516)
T KOG2517|consen 462 ASGK 465 (516)
T ss_pred hcCC
Confidence 7654
No 137
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=30.67 E-value=42 Score=33.68 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=15.6
Q ss_pred cEEEEecCCcceEEEEEEeCC
Q 011283 91 LFYALDLGGTNFRVLRVQLGG 111 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g 111 (489)
..|.+|+|||+.-+++|. +|
T Consensus 78 ~~i~vDmGGTTtDi~~i~-~G 97 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK-DG 97 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE-TT
T ss_pred CEEEEeCCCCEEEEEEEE-CC
Confidence 489999999999999996 44
No 138
>PRK03657 hypothetical protein; Validated
Probab=29.41 E-value=2e+02 Score=26.56 Aligned_cols=58 Identities=21% Similarity=0.448 Sum_probs=39.6
Q ss_pred hhcCChhHHHH---HHHHHhHhhhccccccCCCCcceeehhcccCcCCC----ccc-cEEEEecCCc
Q 011283 42 ECAAPLPVLRN---VADAMTADMRAGLVVDGGGELKMILSYVDALPTGN----ERG-LFYALDLGGT 100 (489)
Q Consensus 42 ~~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~~~Mlpt~v~~lP~G~----E~G-~~LaIDlGGT 100 (489)
.+.++.+.|++ ++.....+|-+|......+++..--|-+.. |+|. +.| .|+||...+.
T Consensus 70 lLgV~~~~i~~~gavS~e~A~~MA~g~~~~~~aDiala~TG~AG-P~g~~~~kpvGtV~iai~~~~~ 135 (170)
T PRK03657 70 ILSVSQQSLERYSAVSEAVVAEMATGAIERADADISIAISGYGG-PEGGEDGTPAGTVWFAWNIKGQ 135 (170)
T ss_pred hcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeccccC-CCCCCCCCCCeEEEEEEEcCCc
Confidence 34577787777 777888888888765545677777776654 6653 346 4889877653
No 139
>PTZ00452 actin; Provisional
Probab=29.13 E-value=50 Score=34.45 Aligned_cols=55 Identities=13% Similarity=0.264 Sum_probs=38.6
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhHHHHhhcccccc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGAALLASANSKFD 486 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGAA~~aa~~~~~~ 486 (489)
.|++.|| ....|.|.++++..|++++.+. .++++... ..++-+||+++|.. +.|+
T Consensus 296 nIvL~GG-~Sl~~Gf~~RL~~El~~~~p~~--~~v~v~~~~~r~~~aW~GgSilasl-~~f~ 353 (375)
T PTZ00452 296 NIVLSGG-TTLFPGIANRLSNELTNLVPSQ--LKIQVAAPPDRRFSAWIGGSIQCTL-STQQ 353 (375)
T ss_pred cEEEecc-cccccCHHHHHHHHHHHhCCCC--ceeEEecCCCcceeEEECchhhcCc-cchh
Confidence 3666666 3457899999999999987642 24555433 46789999999865 4444
No 140
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=28.85 E-value=52 Score=29.84 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=37.8
Q ss_pred CCCchHHHHHHHHHHhcCcceEeeeeeccccccc-------cccccc-cCceEEEEEecCCcceeEEee
Q 011283 197 TAGKDVVACLNEAMERQGLDMRVSALVNDTVGTL-------AGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 197 ~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatl-------la~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
-.|..+++.+.+.|+.+|++|.=..-.++..-+- ++++-. +.....=+|+|||+|.++..+
T Consensus 9 hag~~lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTGiG~~iaAN 77 (151)
T COG0698 9 HAGYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGTGIGMSIAAN 77 (151)
T ss_pred cccHHHHHHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCChhHHHHhh
Confidence 4578999999999998888761111122221111 222222 345566679999999999776
No 141
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=28.54 E-value=30 Score=30.95 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=37.5
Q ss_pred cCCCchHHHHHHHHHHhcCcceEeeee-eccc-----cccccccccc-cCceEEEEEecCCcceeEEee
Q 011283 196 GTAGKDVVACLNEAMERQGLDMRVSAL-VNDT-----VGTLAGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 196 ~~~G~dv~~lL~~al~~~~l~v~v~ai-~NDt-----vatlla~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
+-.|.++++.|.+.|++.|..|.=+.. .+|+ .+-.++.+-. +....-=+++|||+|.++.-|
T Consensus 7 Dh~g~~lK~~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~GIliCgtGiG~~iaAN 75 (140)
T PF02502_consen 7 DHAGFELKEAIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADRGILICGTGIGMSIAAN 75 (140)
T ss_dssp -GGGHHHHHHHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCeEEEEcCCChhhhhHhh
Confidence 345789999999999988877522122 2220 1111222222 444555669999999999776
No 142
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=27.79 E-value=79 Score=27.60 Aligned_cols=44 Identities=18% Similarity=0.364 Sum_probs=28.9
Q ss_pred EEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHH
Q 011283 92 FYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIAT 144 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~ 144 (489)
|+|||+|-..+-+++++..|. +.. ...++.+. .+..+|++|+..
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~---~~~----~~~~~~~~--~~~~~l~~~l~~ 44 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGE---KLR----RFKFENDP--AGLEKLLDWLAS 44 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCc---EEE----EEEEeccc--cchhHHhhhhcc
Confidence 789999999999999987662 232 23444332 234567777644
No 143
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=27.78 E-value=2e+02 Score=26.27 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=19.4
Q ss_pred cEEEEecCCcceEEEEEEeCCc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQ 112 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~ 112 (489)
++||||-|-|+.=+++++..++
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~ 24 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGR 24 (164)
T ss_pred EEEEEccccCceeEEEEEecCC
Confidence 5899999999999999998664
No 144
>PTZ00466 actin-like protein; Provisional
Probab=26.73 E-value=56 Score=34.13 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=36.7
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhHHHHhhc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGAALLASA 481 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGAA~~aa~ 481 (489)
.|++.||... .|.|.++++..|++++... .++++... ..++-+||+++|..
T Consensus 301 nIvL~GG~Sl-~~Gf~~RL~~EL~~l~p~~--~~v~v~~~~~r~~~aW~GgSilasl 354 (380)
T PTZ00466 301 HIVLSGGTTM-FHGFGDRLLNEIRKFAPKD--ITIRISAPPERKFSTFIGGSILASL 354 (380)
T ss_pred cEEEeCCccc-cCCHHHHHHHHHHHhCCCC--ceEEEecCCCCceeEEECchhhcCc
Confidence 3666666554 7899999999999987542 24555433 45789999999864
No 145
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.51 E-value=49 Score=33.38 Aligned_cols=68 Identities=21% Similarity=0.386 Sum_probs=38.8
Q ss_pred eeeeehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceE-E-
Q 011283 387 VVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVV-I- 464 (489)
Q Consensus 387 ~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~-i- 464 (489)
++.-+|.+|.+| +++++.+... + + .|++.||+. +++.+.+.+++.+.. .+. +
T Consensus 218 I~aGl~~sia~r--------v~~~~~~~~i-~------~--~v~~~GGva-~N~~l~~al~~~Lg~--------~v~~~p 271 (293)
T TIGR03192 218 VIAAYCQAMAER--------VVSLLERIGV-E------E--GFFITGGIA-KNPGVVKRIERILGI--------KAVDTK 271 (293)
T ss_pred HHHHHHHHHHHH--------HHHHhcccCC-C------C--CEEEECccc-ccHHHHHHHHHHhCC--------CceeCC
Confidence 344578888887 2344444432 1 1 278899964 456666666654421 122 1
Q ss_pred EeccCCcchhHHHHhh
Q 011283 465 EHTKDGSGIGAALLAS 480 (489)
Q Consensus 465 ~~a~Dgs~iGAA~~aa 480 (489)
....-.+.+|||++|.
T Consensus 272 ~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 272 IDSQIAGALGAALFGY 287 (293)
T ss_pred CCccHHHHHHHHHHHH
Confidence 1234567889999875
No 146
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=26.01 E-value=73 Score=34.47 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=28.6
Q ss_pred eeccccccccccccccCceEEEEEecCCcceeEEeeccc
Q 011283 222 LVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVEQMDA 260 (489)
Q Consensus 222 i~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie~~~~ 260 (489)
|=-|++|..+.+-. .....+.++.--|||+=.+...+-
T Consensus 311 VGADAla~il~tg~-~~sdevslvtD~GTNaEivlg~~~ 348 (614)
T COG3894 311 VGADALAMILSTGI-HDSDEVSLVTDYGTNAEIVLGNRD 348 (614)
T ss_pred cchHHHHHHHhccC-ccccceEEEEeecccceEEeccCC
Confidence 44577777776654 346778999999999999987654
No 147
>PLN03184 chloroplast Hsp70; Provisional
Probab=25.95 E-value=82 Score=35.66 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhcCcceEeeeeeccccccccccccc--cCceEEEEEecCCcc
Q 011283 201 DVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW--DEDVMVAVILGTGTN 251 (489)
Q Consensus 201 dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~--~~~~~iglIlGTG~N 251 (489)
.=.+.+.+|.+..|+++ +.++|+.+|++++-.+. ....++-+=+|-|+=
T Consensus 186 ~qR~a~~~Aa~~AGl~v--~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~ 236 (673)
T PLN03184 186 SQRTATKDAGRIAGLEV--LRIINEPTAASLAYGFEKKSNETILVFDLGGGTF 236 (673)
T ss_pred HHHHHHHHHHHHCCCCe--EEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeE
Confidence 34455556665557765 68999999999875443 223444444555543
No 148
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=25.85 E-value=51 Score=35.31 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=24.7
Q ss_pred cCcc--eEeeeeeccccccccccccccCceEEEEEecCCc
Q 011283 213 QGLD--MRVSALVNDTVGTLAGARYWDEDVMVAVILGTGT 250 (489)
Q Consensus 213 ~~l~--v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~ 250 (489)
.|++ +.|++-.-|+.+++++.-. .+ ..+.+++||..
T Consensus 225 ~Gl~~g~pV~~g~~D~~aa~~g~g~-~~-g~~~~~~GTs~ 262 (465)
T TIGR02628 225 LGLPVGVPVISAGHDTQFALFGSGA-EQ-NQPVLSSGTWE 262 (465)
T ss_pred hCCCCCCCEEecCccHHHHHhccCC-CC-CcEEEeccchh
Confidence 3654 4557788899999987654 33 34777888864
No 149
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=25.39 E-value=65 Score=35.92 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhcCcceEeeeeeccccccccccccc--cCceEEEEEecCCc
Q 011283 201 DVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW--DEDVMVAVILGTGT 250 (489)
Q Consensus 201 dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~--~~~~~iglIlGTG~ 250 (489)
.=.+.+.+|.+..|+++ +.++|..+|++++-... ....++-+=+|-|+
T Consensus 143 ~qR~a~~~Aa~~AGl~v--~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT 192 (599)
T TIGR01991 143 AQRQATKDAARLAGLNV--LRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGT 192 (599)
T ss_pred HHHHHHHHHHHHcCCCc--eEEecCHHHHHHHHhhccCCCCEEEEEEcCCCe
Confidence 34555666666667775 58999999999874433 23334444455554
No 150
>PTZ00004 actin-2; Provisional
Probab=25.36 E-value=55 Score=34.06 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=37.5
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEe---ccCCcchhHHHHhhc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEH---TKDGSGIGAALLASA 481 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~---a~Dgs~iGAA~~aa~ 481 (489)
.|++-||... .|.|.++++..|+.++... .++++.. ...++-+||+++|..
T Consensus 299 nIvl~GG~s~-~~Gf~~RL~~EL~~~~p~~--~~~~v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 299 NIVLSGGTTM-YRGLPERLTKELTTLAPST--MKIKVVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred hEEeccchhc-CcCHHHHHHHHHHHhCCCC--ccEEEecCCCCceeEEECcccccCc
Confidence 3667777554 8899999999999987643 2455543 257889999998764
No 151
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=23.95 E-value=45 Score=29.99 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=37.0
Q ss_pred CCCchHHHHHHHHHHhcCcceE-eeeeecccc-----ccccccccc-cCceEEEEEecCCcceeEEee
Q 011283 197 TAGKDVVACLNEAMERQGLDMR-VSALVNDTV-----GTLAGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 197 ~~G~dv~~lL~~al~~~~l~v~-v~ai~NDtv-----atlla~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
-.|.++++.|.+.|+++|..|. +-.-.+|.+ +..++.+.. +....-=+|+|||+|.++.-|
T Consensus 7 haG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaAN 74 (144)
T TIGR00689 7 HAGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIAAN 74 (144)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHHHHHHh
Confidence 3577999999999998887652 111112321 111122212 444455569999999999776
No 152
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=23.58 E-value=7.9e+02 Score=24.98 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=35.4
Q ss_pred eeehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHh
Q 011283 389 IEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTEL 453 (489)
Q Consensus 389 ~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~ 453 (489)
++.|+.+++-.|.-+|-.|-+....+.. +...|++.||+. +...|...|.+++.-.
T Consensus 268 d~~a~~~~~AmayQVaKeIG~~savL~G--------~vDaIvLTGGiA-~~~~f~~~I~~~v~~i 323 (358)
T COG3426 268 DEKAKLAYEAMAYQVAKEIGAMSAVLKG--------KVDAIVLTGGIA-YEKLFVDAIEDRVSWI 323 (358)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhhcCC--------CCCEEEEecchh-hHHHHHHHHHHHHhhh
Confidence 3566666666555555555544444443 234699999985 4667888888877553
No 153
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=23.20 E-value=78 Score=27.07 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=15.7
Q ss_pred EEEEecCCcceEEEEEEeC
Q 011283 92 FYALDLGGTNFRVLRVQLG 110 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~ 110 (489)
+.+||+|++++++.+.+.+
T Consensus 1 i~~iDiGs~~~~~~i~~~~ 19 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG 19 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT
T ss_pred CEEEEcCCCcEEEEEEEeC
Confidence 4689999999999999874
No 154
>PLN02295 glycerol kinase
Probab=23.06 E-value=71 Score=34.72 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=30.7
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhcccc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANSK 484 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~~ 484 (489)
.|.+.||. .+.+.+.+.+...+ ...|......+++.+|||++|+++.-
T Consensus 415 ~i~~~GGg-a~s~~w~Qi~ADv~--------g~pV~~~~~~e~~alGaA~~A~~~~G 462 (512)
T PLN02295 415 LLRVDGGA-TANNLLMQIQADLL--------GSPVVRPADIETTALGAAYAAGLAVG 462 (512)
T ss_pred eEEEeccc-hhCHHHHHHHHHhc--------CCceEecCccccHHHHHHHHHHhhcC
Confidence 35555554 36677776665533 22454444568999999999987654
No 155
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=22.71 E-value=74 Score=30.06 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=16.0
Q ss_pred EEEEecCCcceEEEEEEeC
Q 011283 92 FYALDLGGTNFRVLRVQLG 110 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~ 110 (489)
+|.||+|=|++|+++++-+
T Consensus 1 ~L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEEE-SSEEEEEEEETT
T ss_pred CEEEEECCCeEEEEEEECC
Confidence 6899999999999999753
No 156
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=21.89 E-value=1.9e+02 Score=32.07 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.1
Q ss_pred ccccEEEEecCCcceEEEEEEeCCc
Q 011283 88 ERGLFYALDLGGTNFRVLRVQLGGQ 112 (489)
Q Consensus 88 E~G~~LaIDlGGTnlRv~lV~l~g~ 112 (489)
+...++.+|+||.++-+.+++..+.
T Consensus 181 ~~~~vlV~D~Gggt~dvsv~~~~~~ 205 (595)
T TIGR02350 181 KDEKILVFDLGGGTFDVSILEIGDG 205 (595)
T ss_pred CCcEEEEEECCCCeEEEEEEEecCC
Confidence 3457899999999999999998654
No 157
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=21.77 E-value=80 Score=34.64 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=42.4
Q ss_pred eehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccC
Q 011283 390 EVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKD 469 (489)
Q Consensus 390 ~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~D 469 (489)
.++++|++= +|..+.-++..+..... ....|.+.||.. +.+.+.+.+...+ + ..|+.....+
T Consensus 417 ~~~rAvlEg----iaf~~r~~~e~l~~~g~-----~~~~i~~~GGga-~s~~w~Qi~ADvl----g----~pV~~~~~~e 478 (541)
T TIGR01315 417 LLYYATMEF----IAYGTRQIVEAMNTAGH-----TIKSIFMSGGQC-QNPLLMQLIADAC----D----MPVLIPYVNE 478 (541)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHcCC-----CccEEEEecCcc-cCHHHHHHHHHHH----C----CeeEecChhH
Confidence 355666663 44444444554432110 112366666754 5666666655433 2 2455455567
Q ss_pred CcchhHHHHhhccc
Q 011283 470 GSGIGAALLASANS 483 (489)
Q Consensus 470 gs~iGAA~~aa~~~ 483 (489)
++.+|||++|+++.
T Consensus 479 ~~alGaA~lA~~~~ 492 (541)
T TIGR01315 479 AVLHGAAMLGAKAA 492 (541)
T ss_pred HHHHHHHHHHHHhc
Confidence 88999999998654
No 158
>PRK11678 putative chaperone; Provisional
Probab=21.14 E-value=1e+02 Score=33.18 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=33.1
Q ss_pred HHHHHHHhcCcceEeeeeecccccccccccc--ccCceEEEEEecCCcceeEEe
Q 011283 205 CLNEAMERQGLDMRVSALVNDTVGTLAGARY--WDEDVMVAVILGTGTNACYVE 256 (489)
Q Consensus 205 lL~~al~~~~l~v~v~ai~NDtvatlla~~~--~~~~~~iglIlGTG~Na~yie 256 (489)
.|.+|.+..|+++ +.++|..+|++++-.. .....++-+=+|-||=-.-+.
T Consensus 175 ~l~~Aa~~AG~~~--v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv 226 (450)
T PRK11678 175 ILERAAKRAGFKD--VEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSML 226 (450)
T ss_pred HHHHHHHHcCCCE--EEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEE
Confidence 3667776668875 6899999999996432 234455555677777544333
Done!