Query 011283
Match_columns 489
No_of_seqs 198 out of 1226
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 04:56:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f9m_A Glucokinase; hexokinase 100.0 2E-112 6E-117 890.9 26.1 441 31-486 16-465 (470)
2 3hm8_A Hexokinase-3; glucose, 100.0 2E-109 8E-114 861.3 26.8 434 34-487 4-442 (445)
3 3o8m_A Hexokinase; rnaseh-like 100.0 5E-109 2E-113 871.2 29.2 444 28-485 19-473 (485)
4 1bdg_A Hexokinase; phosphotran 100.0 8E-102 3E-106 816.6 27.5 437 30-485 6-450 (451)
5 2yhx_A Hexokinase B; transfera 100.0 1.5E-97 5E-102 783.4 28.2 433 33-486 6-447 (457)
6 1cza_N Hexokinase type I; stru 100.0 4.1E-94 1.4E-98 816.1 26.7 439 33-486 467-912 (917)
7 1cza_N Hexokinase type I; stru 100.0 6E-85 2E-89 741.0 25.7 441 28-485 14-463 (917)
8 3vgl_A Glucokinase; ROK family 100.0 6.8E-32 2.3E-36 273.1 18.3 307 90-485 2-316 (321)
9 2qm1_A Glucokinase; alpha-beta 100.0 2.6E-31 8.8E-36 268.5 18.1 310 90-483 6-323 (326)
10 1z05_A Transcriptional regulat 100.0 1.4E-30 4.6E-35 273.7 23.5 343 38-480 58-414 (429)
11 1z6r_A MLC protein; transcript 100.0 1.1E-30 3.8E-35 272.3 21.3 346 38-479 35-391 (406)
12 3vov_A Glucokinase, hexokinase 100.0 8E-31 2.7E-35 263.1 16.8 285 91-480 2-294 (302)
13 3r8e_A Hypothetical sugar kina 100.0 1.6E-30 5.3E-35 263.1 15.9 295 88-480 17-318 (321)
14 4db3_A Glcnac kinase, N-acetyl 100.0 2.7E-30 9.4E-35 262.1 17.4 285 91-480 25-325 (327)
15 2hoe_A N-acetylglucosamine kin 100.0 4.1E-30 1.4E-34 266.0 18.9 325 38-480 38-370 (380)
16 4htl_A Beta-glucoside kinase; 100.0 3.4E-30 1.2E-34 257.9 17.5 281 90-481 4-291 (297)
17 2ap1_A Putative regulator prot 100.0 8.7E-30 3E-34 257.9 13.8 286 90-480 24-325 (327)
18 3htv_A D-allose kinase, alloki 100.0 4E-29 1.4E-33 251.7 14.0 285 88-480 5-298 (310)
19 2yhw_A Bifunctional UDP-N-acet 100.0 1.8E-28 6.2E-33 249.9 18.8 304 89-481 29-338 (343)
20 2aa4_A Mannac kinase, putative 100.0 3.5E-29 1.2E-33 249.0 9.9 280 91-480 2-287 (289)
21 3mcp_A Glucokinase; structural 100.0 3.8E-28 1.3E-32 249.4 16.3 269 88-467 7-300 (366)
22 3epq_A Putative fructokinase; 100.0 1.6E-28 5.5E-33 246.4 12.6 267 91-480 4-288 (302)
23 2gup_A ROK family protein; sug 99.9 1.2E-27 4.1E-32 238.4 14.2 277 90-481 4-287 (292)
24 1sz2_A Glucokinase, glucose ki 99.9 8.6E-27 2.9E-31 236.7 11.2 290 89-480 13-325 (332)
25 2q2r_A Glucokinase 1, putative 99.9 3E-26 1E-30 236.3 10.9 294 89-480 28-370 (373)
26 1woq_A Inorganic polyphosphate 99.9 3E-24 1E-28 211.4 11.2 247 86-483 8-263 (267)
27 2e2o_A Hexokinase; acetate and 99.9 2.2E-23 7.4E-28 208.2 9.6 280 91-481 3-287 (299)
28 2ch5_A NAGK protein; transfera 99.9 2.5E-22 8.6E-27 204.4 16.8 299 91-480 7-323 (347)
29 1saz_A Probable butyrate kinas 99.9 1.6E-22 5.6E-27 209.0 9.5 289 91-481 3-348 (381)
30 3lm2_A Putative kinase; struct 99.8 4.4E-22 1.5E-26 191.0 5.1 204 89-452 5-209 (226)
31 1zc6_A Probable N-acetylglucos 99.8 1E-19 3.6E-24 182.2 10.8 278 91-487 12-300 (305)
32 1zbs_A Hypothetical protein PG 99.8 1.4E-19 4.9E-24 180.1 11.0 277 92-488 2-287 (291)
33 1zxo_A Conserved hypothetical 99.8 3.7E-20 1.3E-24 184.4 6.3 268 91-480 1-277 (291)
34 3ifr_A Carbohydrate kinase, FG 97.6 0.00018 6.3E-09 76.5 10.7 85 87-178 4-95 (508)
35 4e1j_A Glycerol kinase; struct 97.4 0.00043 1.5E-08 73.8 10.1 80 90-176 26-112 (520)
36 2p3r_A Glycerol kinase; glycer 97.4 0.00031 1.1E-08 74.7 8.8 83 88-177 1-90 (510)
37 2dpn_A Glycerol kinase; thermu 97.3 0.00072 2.5E-08 71.6 9.9 80 91-177 3-89 (495)
38 1hux_A Activator of (R)-2-hydr 97.2 0.00052 1.8E-08 66.9 7.7 26 91-119 4-29 (270)
39 2w40_A Glycerol kinase, putati 97.2 0.001 3.4E-08 70.6 10.4 80 91-177 5-93 (503)
40 3g25_A Glycerol kinase; IDP007 97.2 0.00067 2.3E-08 72.0 8.9 81 90-177 6-93 (501)
41 2zf5_O Glycerol kinase; hypert 97.2 0.001 3.5E-08 70.4 10.3 81 91-178 4-91 (497)
42 3h3n_X Glycerol kinase; ATP-bi 97.2 0.00087 3E-08 71.2 9.5 82 89-177 4-92 (506)
43 2itm_A Xylulose kinase, xylulo 97.2 0.0012 3.9E-08 69.8 10.1 79 91-178 1-86 (484)
44 4ehu_A Activator of 2-hydroxyi 97.2 0.00058 2E-08 66.3 7.0 36 221-256 75-110 (276)
45 2d4w_A Glycerol kinase; alpha 97.1 0.00089 3.1E-08 71.0 8.7 80 91-177 3-89 (504)
46 3bex_A Type III pantothenate k 97.0 0.0017 5.9E-08 62.5 8.1 168 91-318 4-193 (249)
47 3ezw_A Glycerol kinase; glycer 96.9 0.0016 5.4E-08 69.5 8.3 77 87-170 1-80 (526)
48 3l0q_A Xylulose kinase; xlylul 96.8 0.0018 6.3E-08 69.5 7.8 75 89-170 4-81 (554)
49 3hz6_A Xylulokinase; xylulose, 96.7 0.0058 2E-07 64.9 10.8 74 90-171 5-81 (511)
50 3ll3_A Gluconate kinase; xylul 96.6 0.0031 1.1E-07 66.9 7.9 61 90-153 4-67 (504)
51 3jvp_A Ribulokinase; PSI-II, N 96.6 0.0027 9.2E-08 68.5 7.0 75 90-171 5-94 (572)
52 2uyt_A Rhamnulokinase; rhamnos 96.5 0.0063 2.1E-07 64.1 8.8 78 90-178 4-92 (489)
53 3djc_A Type III pantothenate k 96.3 0.013 4.4E-07 56.9 9.0 50 91-154 3-52 (266)
54 3i8b_A Xylulose kinase; strain 96.0 0.019 6.6E-07 60.9 9.9 74 89-177 4-82 (515)
55 3h6e_A Carbohydrate kinase, FG 96.0 0.0087 3E-07 63.1 6.6 58 90-150 6-65 (482)
56 2h3g_X Biosynthetic protein; p 92.5 0.67 2.3E-05 44.7 10.5 46 92-146 2-47 (268)
57 4bc3_A Xylulose kinase; transf 91.8 0.23 7.9E-06 52.8 6.8 28 90-120 10-37 (538)
58 2ych_A Competence protein PILM 87.5 4.4 0.00015 40.3 12.1 55 201-257 151-209 (377)
59 3qfu_A 78 kDa glucose-regulate 87.5 2.4 8E-05 42.4 10.0 54 201-256 167-223 (394)
60 4gni_A Putative heat shock pro 86.5 2.7 9.3E-05 42.4 10.0 54 201-256 164-222 (409)
61 3h1q_A Ethanolamine utilizatio 86.4 5.7 0.0002 37.4 11.7 23 89-111 27-49 (272)
62 3i33_A Heat shock-related 70 k 86.3 2.7 9.1E-05 42.4 9.7 54 201-256 172-231 (404)
63 4b9q_A Chaperone protein DNAK; 78.0 8.1 0.00028 41.4 10.0 56 200-257 148-206 (605)
64 4ijn_A Acetate kinase, acetoki 70.9 2.1 7.2E-05 43.5 2.9 55 389-452 296-350 (398)
65 2v7y_A Chaperone protein DNAK; 70.7 20 0.00067 37.4 10.5 50 203-254 125-176 (509)
66 1yuw_A Heat shock cognate 71 k 69.2 19 0.00064 38.1 10.1 53 202-256 154-210 (554)
67 1dkg_D Molecular chaperone DNA 65.7 13 0.00044 36.9 7.5 53 202-256 150-205 (383)
68 2kho_A Heat shock protein 70; 64.6 22 0.00074 38.1 9.5 53 202-256 150-205 (605)
69 1iv0_A Hypothetical protein; r 63.5 34 0.0012 27.3 8.2 21 91-111 2-22 (98)
70 3d2f_A Heat shock protein homo 62.1 25 0.00086 38.1 9.5 54 201-256 152-214 (675)
71 4a2a_A Cell division protein F 61.4 27 0.00093 35.5 9.1 54 201-256 168-223 (419)
72 1nu0_A Hypothetical protein YQ 60.3 17 0.00058 31.1 6.2 22 90-111 3-24 (138)
73 3ezw_A Glycerol kinase; glycer 56.4 7.1 0.00024 41.0 3.8 47 428-483 405-451 (526)
74 3jvp_A Ribulokinase; PSI-II, N 52.2 8.7 0.0003 40.9 3.6 76 391-483 414-489 (572)
75 3ifr_A Carbohydrate kinase, FG 52.0 13 0.00045 38.8 5.0 48 428-484 403-450 (508)
76 2ews_A Pantothenate kinase; PA 50.9 7.7 0.00026 37.6 2.7 44 428-478 239-285 (287)
77 3g25_A Glycerol kinase; IDP007 50.9 9.9 0.00034 39.6 3.8 48 428-484 407-454 (501)
78 3i8b_A Xylulose kinase; strain 50.2 14 0.00049 38.6 4.9 47 428-483 427-473 (515)
79 1vhx_A Putative holliday junct 50.1 14 0.00049 32.0 4.1 22 91-112 4-25 (150)
80 3h6e_A Carbohydrate kinase, FG 48.8 9.8 0.00034 39.6 3.3 63 403-482 374-436 (482)
81 3ll3_A Gluconate kinase; xylul 47.4 14 0.00049 38.5 4.4 42 214-256 226-269 (504)
82 1hjr_A Holliday junction resol 46.9 31 0.0011 30.1 5.8 22 91-112 2-23 (158)
83 3nuw_A 2-OXO-3-deoxygalactonat 46.5 20 0.00068 34.8 4.9 26 91-120 7-32 (295)
84 3t69_A Putative 2-dehydro-3-de 46.3 16 0.00054 36.1 4.1 27 90-119 7-33 (330)
85 2p3r_A Glycerol kinase; glycer 43.1 11 0.00038 39.4 2.6 47 428-483 404-450 (510)
86 2fsj_A Hypothetical protein TA 42.4 42 0.0014 32.9 6.7 52 88-148 188-239 (346)
87 2d4w_A Glycerol kinase; alpha 41.6 16 0.00055 38.0 3.6 47 428-483 406-452 (504)
88 4em8_A Ribose 5-phosphate isom 41.5 12 0.00041 32.6 2.1 61 196-257 15-82 (148)
89 3h3n_X Glycerol kinase; ATP-bi 41.4 10 0.00035 39.6 2.1 47 428-483 406-452 (506)
90 3l0q_A Xylulose kinase; xlylul 40.8 23 0.00079 37.3 4.8 48 428-484 445-492 (554)
91 2itm_A Xylulose kinase, xylulo 40.4 23 0.00077 36.6 4.5 35 214-249 221-256 (484)
92 3mdq_A Exopolyphosphatase; str 39.9 53 0.0018 31.9 6.9 62 91-152 5-68 (315)
93 3zyy_X Iron-sulfur cluster bin 39.8 33 0.0011 36.9 5.7 38 221-259 352-389 (631)
94 2zf5_O Glycerol kinase; hypert 39.5 21 0.00071 37.1 4.1 74 391-483 369-442 (497)
95 3hi0_A Putative exopolyphospha 39.3 48 0.0016 34.6 6.8 76 75-152 2-79 (508)
96 2dpn_A Glycerol kinase; thermu 39.0 10 0.00035 39.4 1.6 76 391-483 372-447 (495)
97 1t6c_A Exopolyphosphatase; alp 38.2 51 0.0017 32.0 6.5 62 91-152 13-76 (315)
98 3s5p_A Ribose 5-phosphate isom 38.2 10 0.00035 33.6 1.2 61 197-257 30-97 (166)
99 3vth_A Hydrogenase maturation 37.2 15 0.00052 40.5 2.6 48 428-481 696-747 (761)
100 4ep4_A Crossover junction endo 37.1 96 0.0033 27.3 7.4 22 91-112 2-23 (166)
101 3cet_A Conserved archaeal prot 35.5 19 0.00064 35.6 2.7 38 388-434 248-285 (334)
102 3ph3_A Ribose-5-phosphate isom 34.9 13 0.00044 33.1 1.3 61 197-257 29-96 (169)
103 2w40_A Glycerol kinase, putati 34.4 15 0.0005 38.3 1.9 46 429-483 411-456 (503)
104 3he8_A Ribose-5-phosphate isom 32.9 15 0.00052 32.0 1.4 61 197-257 9-76 (149)
105 2wp7_A PPPDE peptidase domain- 31.2 17 0.0006 32.2 1.5 67 13-85 63-133 (168)
106 4e1j_A Glycerol kinase; struct 30.4 35 0.0012 35.7 4.0 46 429-483 429-474 (520)
107 3cer_A Possible exopolyphospha 28.9 88 0.003 30.7 6.5 62 91-152 17-81 (343)
108 1o1x_A Ribose-5-phosphate isom 27.3 33 0.0011 30.0 2.6 62 196-257 20-88 (155)
109 3ttc_A HYPF, transcriptional r 27.0 22 0.00074 38.6 1.7 46 428-481 602-651 (657)
110 3tai_A DNA double-strand break 27.0 44 0.0015 34.1 3.7 49 44-96 23-71 (471)
111 1u6z_A Exopolyphosphatase; alp 25.5 1.1E+02 0.0038 31.8 6.8 62 91-152 12-75 (513)
112 1nbw_A Glycerol dehydratase re 25.5 5E+02 0.017 27.5 11.5 58 91-153 3-60 (607)
113 3r9p_A ACKA; ssgcid, seattle s 25.4 31 0.0011 34.8 2.3 26 239-264 195-220 (391)
114 2vvr_A Ribose-5-phosphate isom 23.4 43 0.0015 29.0 2.6 62 196-257 9-77 (149)
115 2ivn_A O-sialoglycoprotein end 23.3 3.8E+02 0.013 25.7 9.9 47 428-480 247-297 (330)
116 4bc3_A Xylulose kinase; transf 23.1 46 0.0016 34.8 3.3 39 214-254 269-309 (538)
117 3qfu_A 78 kDa glucose-regulate 23.0 1.6E+02 0.0053 28.7 7.1 30 83-112 199-228 (394)
118 2vvp_A Ribose-5-phosphate isom 22.9 25 0.00087 30.9 1.0 60 198-257 13-80 (162)
119 2uyt_A Rhamnulokinase; rhamnos 22.4 47 0.0016 34.2 3.1 44 428-481 396-439 (489)
120 2i7n_A Pantothenate kinase 1; 22.3 61 0.0021 32.3 3.8 50 428-479 308-358 (360)
121 2fxu_A Alpha-actin-1, actin, a 20.6 78 0.0027 31.1 4.3 54 429-486 297-353 (375)
122 2f9w_A Pantothenate kinase; CO 20.3 58 0.002 31.1 3.0 18 91-108 24-41 (271)
No 1
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*
Probab=100.00 E-value=1.8e-112 Score=890.93 Aligned_cols=441 Identities=36% Similarity=0.632 Sum_probs=401.3
Q ss_pred cchhhHHHHHhhhcCChhHHHHHHHHHhHhhhccccccC--CCCcceeehhcccCcCCCccccEEEEecCCcceEEEEEE
Q 011283 31 SVAPILTKLQKECAAPLPVLRNVADAMTADMRAGLVVDG--GGELKMILSYVDALPTGNERGLFYALDLGGTNFRVLRVQ 108 (489)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~--~s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~lV~ 108 (489)
+..+.++++.++|.++.++|++|+++|++||++||++++ .|+++||||||+++|+|+|+|.|||||+|||||||++|+
T Consensus 16 ~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~GL~~~~~~~s~~~MlPTyV~~lP~G~E~G~fLAlDlGGTNfRV~~V~ 95 (470)
T 3f9m_A 16 MKKEKVEQILAEFQLQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLVK 95 (470)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHHHSTTTTTTCSSCCEEEEEESSCCCCCCEEEEEEEESSSEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcccCCCCCCcccccCccccCCCCCcceEEEEEEecCceEEEEEEE
Confidence 355667788888999999999999999999999998753 488999999999999999999999999999999999999
Q ss_pred eCCcc--ceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeeccccccccceee
Q 011283 109 LGGQE--ERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVLI 186 (489)
Q Consensus 109 l~g~~--~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~li 186 (489)
+.|++ .+.++..+++|+||++++.+++++||||||+||++|+++++.. .+.+++|||||||++|+++++|+|+
T Consensus 96 L~g~~~~~~~~~~~~~~~~Ip~~l~~gt~~eLFd~IA~~i~~fl~~~~~~-----~~~lpLGfTFSFP~~Q~sl~~g~Li 170 (470)
T 3f9m_A 96 VGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMK-----HKKLPLGFTFSFPVRHEDIDKGILL 170 (470)
T ss_dssp EEC----CEEEEEEEEEEECCHHHHSSBHHHHHHHHHHHHHHHHHHTTCS-----SSCCEEEEEECSCEEEEETTEEEEC
T ss_pred ECCCCCCcceEEEEEEeecCChHhccCCHHHHHHHHHHHHHHHHhhcccc-----ccccceEEEEeccccccCCCceEEE
Confidence 97653 2244455568999999999999999999999999999987642 4679999999999999999999999
Q ss_pred eeccceeeecCCCchHHHHHHHHHHhcC-cceEeeeeeccccccccccccccCceEEEEEecCCcceeEEeecccccccc
Q 011283 187 KWTKGFSVSGTAGKDVVACLNEAMERQG-LDMRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVEQMDAIPKLQ 265 (489)
Q Consensus 187 ~wtKgf~~~~~~G~dv~~lL~~al~~~~-l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie~~~~i~~~~ 265 (489)
+|||||++++++|+||+++|+++++|++ +||+|+||+|||||||++++|.+++|.||+|+|||+|+||+|+.++|++++
T Consensus 171 ~WTKGF~~~~v~G~DVv~lL~~al~r~g~~~v~v~AlvNDTVgTL~s~aY~~~~~~iGlI~GTGtNa~Y~E~~~~I~k~~ 250 (470)
T 3f9m_A 171 NWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNVELVE 250 (470)
T ss_dssp CCCTTCCCBTCBTSBHHHHHHHHHHHHCSCCCEEEEEECHHHHHHHHHHTTCTTEEEEEEESSSEEEEEEEEGGGCTTSS
T ss_pred eccccccCCCcCCccHHHHHHHHHHhcCCCCCcEEEEEEcCHHHHHhcccCCCCceEEEEEecCCceEEeeecccccccc
Confidence 9999999999999999999999999998 799999999999999999999999999999999999999999999999998
Q ss_pred CCcCCCCCeeeeccccccc--CC--CcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCccc
Q 011283 266 GNKSPSGRTIINTEWGAFS--KG--LPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPE 341 (489)
Q Consensus 266 g~~~~~g~miIn~E~G~f~--~~--lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~ 341 (489)
+ ..++|+||||||.|. +. +|+|+||..+|+.|.|||+|+||||+||+|||||+|++++++++++.||.+..|+
T Consensus 251 ~---~~~~miINtEwG~Fg~~~~l~~~~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRliL~~l~~~~~lf~~~~~~ 327 (470)
T 3f9m_A 251 G---DEGRMCVNTEWGAFGDSGELDEFLLEYDRLVDESSANPGQQLYEKLIGGKYMGELVRLVLLRLVDENLLFHGEASE 327 (470)
T ss_dssp C---CSSEEEEECCGGGTTTTSTTGGGCCHHHHHHHHHSSSTTSCHHHHTTCHHHHHHHHHHHHHHHHHTTCSGGGCCCT
T ss_pred C---CCCcEEEeechhhcCCCcccCCCCCcccHHHhhcCCCCCceeeccccchhhHHHHHHHHHHHHHHhCcCcCCCCcH
Confidence 6 567899999999993 34 4799999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCcc
Q 011283 342 KLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGA 421 (489)
Q Consensus 342 ~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~ 421 (489)
.|.++|.|+|++||.|++|++++ ..+..++++ ++++++.+|++++++||++|.+|||+|+|++|+||+++++.....
T Consensus 328 ~L~~~~~l~T~~ls~ie~d~~~~-~~~~~il~~-l~~~~~~~d~~~vr~i~~~V~~RaA~L~Aa~iaail~k~~~~~~~- 404 (470)
T 3f9m_A 328 QLRTRGAFETRFVSQVESDTGDR-KQIYNILST-LGLRPSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRESRSE- 404 (470)
T ss_dssp TTTSTTCSCHHHHHHHHTCCSSC-HHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred HhcCCCCcCchHHhhhccCCCch-HHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-
Confidence 99999999999999999999888 788888876 888867799999999999999999999999999999999864211
Q ss_pred cccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhcccccc
Q 011283 422 IFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANSKFD 486 (489)
Q Consensus 422 ~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~~~~ 486 (489)
...+++|++|||+|++||.|+++++++++++++ .++|+|++++|||++|||++||+++|.+
T Consensus 405 -~~~~~~VgvDGsv~~~yp~f~~~~~~~l~~l~~---~~~v~l~~a~DGSg~GAAliAa~a~~~~ 465 (470)
T 3f9m_A 405 -DVMRITVGVDGSVYKLHPSFKERFHASVRRLTP---SCEITFIESEEGSGRGAALVSAVACKKA 465 (470)
T ss_dssp -SSEEEEEEEECHHHHHCTTHHHHHHHHHHHHCT---TEEEEEEECSSHHHHHHHHHHHHHTC--
T ss_pred -cccceEEEEeccHHHhCchHHHHHHHHHHHHcC---CCeEEEEEcCCCcHHHHHHHHHHHHHHH
Confidence 123589999999999999999999999999873 4689999999999999999999998875
No 2
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-109 Score=861.33 Aligned_cols=434 Identities=38% Similarity=0.641 Sum_probs=395.9
Q ss_pred hhHHHHHhhhcCChhHHHHHHHHHhHhhhccccccCCCCcceeehhcccCcCCCccccEEEEecCCcceEEEEEEeCCcc
Q 011283 34 PILTKLQKECAAPLPVLRNVADAMTADMRAGLVVDGGGELKMILSYVDALPTGNERGLFYALDLGGTNFRVLRVQLGGQE 113 (489)
Q Consensus 34 ~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~lV~l~g~~ 113 (489)
+.++++.++|.+++++|++|+++|++||++||+.++ |+++||||||+++|+|+|+|+|||||+|||||||++|++.|.
T Consensus 4 ~~~~~~~~~f~l~~~~L~~i~~~f~~em~~GL~~~~-s~~~MlPtyv~~~P~G~E~G~~LAlDlGGTn~RV~~V~l~g~- 81 (445)
T 3hm8_A 4 RLLEETLAPFRLNHDQLAAVQAQMRKAMAKGLRGEA-SSLRMLPTFVRATPDGSERGDFLALDLGGTNFRVLLVRVTTG- 81 (445)
T ss_dssp HHHHHHHGGGSCCHHHHHHHHHHHHHHHHHHHHTSC-CSSCCEECCCCSSCCSCCCEEEEEEEESSSSEEEEEEEESSS-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCC-CCCccCCCCCCCCCCCceeeEEEEEEecCCeEEEEEEEECCc-
Confidence 456677778889999999999999999999998764 889999999999999999999999999999999999999764
Q ss_pred ceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeeccccccccceeeeecccee
Q 011283 114 ERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVLIKWTKGFS 193 (489)
Q Consensus 114 ~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~li~wtKgf~ 193 (489)
....+++|+||++++.+++++||||||+||.+|+++++.. ++.+|+|||||||++|+++++|+|++|||||+
T Consensus 82 ---~~~~~~~~~ip~~~~~g~~~~LFd~Ia~~i~~fl~~~~~~-----~~~lplGftFSFP~~Q~sl~~g~Li~wtKGF~ 153 (445)
T 3hm8_A 82 ---VQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLS-----GQSLPLGFTFSFPCRQLGLDQGILLNWTKGFK 153 (445)
T ss_dssp ---EEEEEEEECCCHHHHTSBHHHHHHHHHHHHHHHHHHHTCT-----TCCCCEEEEECSCEECSSTTCCEECCCCTTCC
T ss_pred ---eEEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHHhCcc-----cccCcceEEEeeeeEeccCCceEEEEeecccc
Confidence 2223347999999999999999999999999999987642 46799999999999999999999999999999
Q ss_pred eecCCCchHHHHHHHHHHhc-CcceEeeeeeccccccccccccccCceEEEEEecCCcceeEEeeccccccccCCcCCCC
Q 011283 194 VSGTAGKDVVACLNEAMERQ-GLDMRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVEQMDAIPKLQGNKSPSG 272 (489)
Q Consensus 194 ~~~~~G~dv~~lL~~al~~~-~l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g 272 (489)
+++++|+||+++|+++++|+ ++||+|+||+|||||||++++|.++++.||+|+|||+|+||+|+.++|+++++ +.+
T Consensus 154 ~~~~~G~dv~~lL~~al~r~~~~~v~vvAivNDTvgTLla~~y~~~~~~iglIlGTGtNa~y~e~~~~i~k~~~---~~~ 230 (445)
T 3hm8_A 154 ASDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYEDPRCEIGLIVGTGTNACYMEELRNVAGVPG---DSG 230 (445)
T ss_dssp CBTCTTSBHHHHHHHHHHHTTCSCCCSEEEECHHHHHHHHHHTTCTTEEEEEEESSSEEEEEEEEGGGCTTSCC---CSS
T ss_pred CCCCCCCcHHHHHHHHHHhcCCCCcceEEEecCcHHHHHhhccCCCCceEEEEEeCCceEEEEEecccccccCC---CCC
Confidence 99999999999999999987 58999999999999999999999999999999999999999999999999875 457
Q ss_pred Ceeeecccccc-c-CCC--cccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCcccccccccc
Q 011283 273 RTIINTEWGAF-S-KGL--PLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMPFV 348 (489)
Q Consensus 273 ~miIn~E~G~f-~-~~l--p~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~ 348 (489)
+|+||||||.| . +.+ |+|+||..+|+.|.|||+|+||||+||+|||||+|+++.++++++.||.+..|+.|.++|.
T Consensus 231 ~miINtEwG~Fg~~~~l~~~~T~~D~~lD~~S~~PG~q~fEKmiSG~YLGEivRliL~~l~~~~~lf~~~~~~~L~~~~~ 310 (445)
T 3hm8_A 231 RMCINMEWGAFGDDGSLAMLSTRFDASVDQASINPGKQRFEKMISGMYLGEIVRHILLHLTSLGVLFRGQQIQRLQTRDI 310 (445)
T ss_dssp EEEEECCGGGTTTTTTTTTTCCHHHHHHHHTSSSTTSSTTGGGTSHHHHHHHHHHHHHHHHHHTSSGGGCCCGGGGSTTC
T ss_pred cEEEEcchhhcCCCCCCcCCCCccchHHhcCCCCCCceEeeeecchhhHHHHHHHHHHHHHHcCCCCCCCCcHHHcCCCC
Confidence 99999999999 3 333 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCcccccceeE
Q 011283 349 LRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTV 428 (489)
Q Consensus 349 ~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~ 428 (489)
|+|++||.|++|++ ++..+..++++ ++++++.+|+.++++||.+|.+|||+|+|++|+|+++++++.... ...+++
T Consensus 311 l~T~~ls~ie~D~~-~~~~~~~~l~~-l~~~~t~~d~~~vr~i~~~V~~RaA~L~Aa~iaai~~k~~~~~~~--~~~~~~ 386 (445)
T 3hm8_A 311 FKTKFLSEIESDSL-ALRQVRAILED-LGLPLTSDDALMVLEVCQAVSQRAAQLCGAGVAAVVEKIRENRGL--EELAVS 386 (445)
T ss_dssp SCHHHHHHHTCTTC-CHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--SSEEEE
T ss_pred CCcHHHHHHhcCCc-hHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--cccCcE
Confidence 99999999998865 46667888876 898888999999999999999999999999999999999763221 113579
Q ss_pred EEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhccccccC
Q 011283 429 VAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANSKFDH 487 (489)
Q Consensus 429 I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~~~~~ 487 (489)
|++|||||++||.|+++++++++++.+. ++|+|++++|||++|||++||+++|..+
T Consensus 387 VgvDGsvy~~~P~f~~~l~~~l~~l~~~---~~v~~~~s~DGSg~GAAl~AA~a~~~~~ 442 (445)
T 3hm8_A 387 VGVDGTLYKLHPRFSSLVAATVRELAPR---CVVTFLQSEDGSGKGAALVTAVACRLAQ 442 (445)
T ss_dssp EEEECHHHHHCTTHHHHHHHHHHHHCTT---EEEEEEECSSCHHHHHHHHHHHHHHHHC
T ss_pred EEEeceehccChhHHHHHHHHHHHhCCC---CcEEEEECCCCchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998653 5799999999999999999999988654
No 3
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=100.00 E-value=5e-109 Score=871.19 Aligned_cols=444 Identities=34% Similarity=0.592 Sum_probs=410.0
Q ss_pred CcccchhhHHHHHhhhcCChhHHHHHHHHHhHhhhccccccCCCCcceeehhcccCcCCCccccEEEEecCCcceEEEEE
Q 011283 28 VNVSVAPILTKLQKECAAPLPVLRNVADAMTADMRAGLVVDGGGELKMILSYVDALPTGNERGLFYALDLGGTNFRVLRV 107 (489)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~lV 107 (489)
.++++++.+++++++|.++.++|++|+++|++||++||++++ ++++||||||+++|+|+|+|+|||||+|||||||++|
T Consensus 19 ~~~~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~-~~~~MlPt~V~~lP~G~E~G~~LalDlGGTn~Rv~~V 97 (485)
T 3o8m_A 19 VPANLMEQIHGLETLFTVSSEKMRSIVKHFISELDKGLSKKG-GNIPMIPGWVVEYPTGKETGDFLALDLGGTNLRVVLV 97 (485)
T ss_dssp SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHSSSC-CSSCCEECCCCSCCCSCCEEEEEEEEESSSEEEEEEE
T ss_pred CcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccCC-CCCcccCCCCCCCCCCCcceEEEEEEecCCeEEEEEE
Confidence 556788999999999999999999999999999999998764 6899999999999999999999999999999999999
Q ss_pred EeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeeccccccccceeee
Q 011283 108 QLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVLIK 187 (489)
Q Consensus 108 ~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~li~ 187 (489)
++.|+.. .....++|+||++++.+++++||+|||+||.+|+++++... ..+.+++|||||||++|+++++|+|++
T Consensus 98 ~l~g~~~--~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~---~~~~l~lGftfSfP~~q~~i~~g~li~ 172 (485)
T 3o8m_A 98 KLGGNHD--FDTTQNKYRLPDHLRTGTSEQLWSFIAKCLKEFVDEWYPDG---VSEPLPLGFTFSYPASQKKINSGVLQR 172 (485)
T ss_dssp EEESSSC--EEEEEEEEECCTTGGGSBHHHHHHHHHHHHHHHHHHHCTTC---CSSCEEEEEEECSCEECSBTTCCEECC
T ss_pred EECCCCc--eEEEEEEEecCchhccCCHHHHHHHHHHHHHHHHHHhcccc---cccccceEEEEeeeEEEcccCCEEEee
Confidence 9977532 12223479999999988899999999999999999875321 145789999999999999999999999
Q ss_pred eccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccCceEEEEEecCCcceeEEeeccccccccC-
Q 011283 188 WTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVEQMDAIPKLQG- 266 (489)
Q Consensus 188 wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie~~~~i~~~~g- 266 (489)
|||||++++++|+||+++|+++++|+++||+|+||+||||||||+++|.++++.||+|+|||+|+||+++.++|+|+++
T Consensus 173 wtKGF~i~~~~G~dv~~~L~~al~r~gl~v~v~aivNDtv~tll~~~y~~~~~~iglIlGTG~N~~y~e~~~~i~k~~~~ 252 (485)
T 3o8m_A 173 WTKGFDIEGVEGHDVVPMLQEQIEKLNIPINVVALINDTTGTLVASLYTDPQTKMGIIIGTGVNGAYYDVVSGIEKLEGL 252 (485)
T ss_dssp CCTTCCCBTCTTSBHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHCTTEEEEEEESSSEEEEEEEEGGGCGGGTTT
T ss_pred ccccccCCCcCCccHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHhhCCCCcEEEEEEecCcceEEEeecccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ---CcCCCCCeeeecccccc-cC--CCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCcc
Q 011283 267 ---NKSPSGRTIINTEWGAF-SK--GLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVP 340 (489)
Q Consensus 267 ---~~~~~g~miIn~E~G~f-~~--~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~ 340 (489)
..+..++|+||||||.| +. .||+|+||..+|+.|.|||+|+||||+||+|||||+|++++++++++.||.+..|
T Consensus 253 ~~~~~~~~~~miINtEwG~F~~~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlil~~l~~~~~lF~~~~~ 332 (485)
T 3o8m_A 253 LPEDIGPDSPMAINCEYGSFDNEHLVLPRTKYDVIIDEESPRPGQQAFEKMTSGYYLGEIMRLVLLDLYDSGFIFKDQDI 332 (485)
T ss_dssp CCTTSCTTCEEEEECCGGGTTTTCSSSCCCHHHHHHHHHSSSTTSCHHHHHHSTTTHHHHHHHHHHHHHHTTSSSTTSCC
T ss_pred ccccCCCCCcEEEEcccccCCCCcccCCCCchhhHHhhcCCCCCceeeccccccchHHHHHHHHHHHHHHcCcccCCCCc
Confidence 22456789999999999 33 5799999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCc
Q 011283 341 EKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNG 420 (489)
Q Consensus 341 ~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~ 420 (489)
+.|.++|+|+|++||.|++|+++++..+..+|.+.++++++.+|++++++||++|.+|||+|+|++|+|+++++++
T Consensus 333 ~~L~~~~~l~T~~ls~i~~d~~~~l~~~~~~l~~~l~~~~t~~d~~~vr~i~~~V~~RAA~L~Aa~iaail~~~~~---- 408 (485)
T 3o8m_A 333 SKLKEAYVMDTSYPSKIEDDPFENLEDTDDLFKTNLNIETTVVERKLIRKLAELVGTRAARLTVCGVSAICDKRGY---- 408 (485)
T ss_dssp GGGGSTTCSCTHHHHHHHHCCCTTCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHhcCCCCcCcHHHHHHHcCCcchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----
Confidence 9999999999999999999999999999999999899988889999999999999999999999999999999997
Q ss_pred ccccceeEEEecCccccchhHHHHHHHHHHHHhhCccc----ccceEEEeccCCcchhHHHHhhccccc
Q 011283 421 AIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEI----SKNVVIEHTKDGSGIGAALLASANSKF 485 (489)
Q Consensus 421 ~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~----~~~v~i~~a~Dgs~iGAA~~aa~~~~~ 485 (489)
+.++|++|||||++||.|++++++++++++.... .++|+|++++|||++|||++||++++.
T Consensus 409 ----~~~~VgvdGSv~~~~P~f~~~~~~~l~~ll~~~~~~~~~~~v~l~~a~DGSg~GAAliAa~a~~~ 473 (485)
T 3o8m_A 409 ----KTAHIAADGSVFNRYPGYKEKAAQALKDIYNWDVEKMEDHPIQLVAAEDGSGVGAAIIACLTQKR 473 (485)
T ss_dssp ----SSEEEEEESHHHHHSTTHHHHHHHHHHHHHTCCCCSGGGCSEEEEECCCTTTHHHHHHHHHHHHH
T ss_pred ----CceEEEEecChhccCccHHHHHHHHHHHHhccccccCCCceEEEEEcCCChHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999986322 568999999999999999999998775
No 4
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=100.00 E-value=7.9e-102 Score=816.63 Aligned_cols=437 Identities=37% Similarity=0.614 Sum_probs=400.3
Q ss_pred ccchhhHHHHHhhhcCChhHHHHHHHHHhHhhhccccc--cCCCCcceeehhcccCcCCCccccEEEEecCCcceEEEEE
Q 011283 30 VSVAPILTKLQKECAAPLPVLRNVADAMTADMRAGLVV--DGGGELKMILSYVDALPTGNERGLFYALDLGGTNFRVLRV 107 (489)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~--~~~s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~lV 107 (489)
+.+.+.+++|+++|.++.++|++|+++|++||++||+. +..|+++||||||+++|+|+|+|+|||||||||||||++|
T Consensus 6 ~~~~~~~~~~~~~f~~~~~~l~~i~~~~~~em~~gL~~~~~~~s~~~mlpt~v~~~P~G~E~G~~lalDlGGTn~Rv~~V 85 (451)
T 1bdg_A 6 QQLFEKVVEILKPFDLSVVDYEEICDRMGESMRLGLQKSTNEKSSIKMFPSYVTKTPNGTETGNFLALDLGGTNYRVLSV 85 (451)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHHHSHHHHTTCSCCCEECCCCSCCCSCCCEEEEEEEESSSSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccccCCCCCCCccceEEEEEeCCCeEEEEEE
Confidence 34567889999999999999999999999999999984 2358899999999999999999999999999999999999
Q ss_pred EeCC-ccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeeccccccccceee
Q 011283 108 QLGG-QEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVLI 186 (489)
Q Consensus 108 ~l~g-~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~li 186 (489)
++.| ++. .....++|+||++++.+++++||+|||++|++|+++++.. .+.+++|||||||++|+++++|+|+
T Consensus 86 ~l~G~~~~--~~i~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~l~~~~~~-----~~~~~lG~tfsfPv~q~~~~~G~l~ 158 (451)
T 1bdg_A 86 TLEGKGKS--PRIQERTYCIPAEKMSGSGTELFKYIAETLADFLENNGMK-----DKKFDLGFTFSFPCVQKGLTHATLV 158 (451)
T ss_dssp EECC-CCC--CEEEEEEECCCTTTTTSBHHHHHHHHHHHHHHHHHHTTCC-----SSCEEEEEEECSCEEEETTTEEEEC
T ss_pred ecCCCCcc--eEEEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHhcCCC-----ccccceEEEEeeEeccccCCCeEEe
Confidence 9987 431 1112237999999888889999999999999999886632 3459999999999999999999999
Q ss_pred eeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccCceEEEEEecCCcceeEEeeccccccccC
Q 011283 187 KWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVEQMDAIPKLQG 266 (489)
Q Consensus 187 ~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie~~~~i~~~~g 266 (489)
+|||||++++|+|+||+++|+++++|+++||+|++|+||||||+++++|.++++.||+|+|||+|+||+++++.|+|+++
T Consensus 159 ~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~al~NDtv~tlla~~y~~~~~~iglIlGTG~na~yve~~~~i~~~~g 238 (451)
T 1bdg_A 159 RWTKGFSADGVEGHNVAELLQTELDKRELNVKCVAVVNDTVGTLASCALEDPKCAVGLIVGTGTNVAYIEDSSKVELMDG 238 (451)
T ss_dssp CCCTTCCCBTCTTSBHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHTTCTTEEEEEEESSSEEEEEEEETTTCGGGCS
T ss_pred ccccccCCCCCCCCcHHHHHHHHHHHcCCCcceEEEEEchHHHHHHhcccCCCcEEEEEEeCCcceEEEEcCccccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcCCCCCeeeecccccc-cCC---CcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCcccc
Q 011283 267 NKSPSGRTIINTEWGAF-SKG---LPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEK 342 (489)
Q Consensus 267 ~~~~~g~miIn~E~G~f-~~~---lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~ 342 (489)
. +.|||+||+|||+| +.. +|+|+||..+|..|+|||+||||||+||+||||++|+++.++.+++.+|.+..|+.
T Consensus 239 ~--~~g~m~In~EwG~f~~~~~~~~p~t~~D~~lD~~s~~pg~q~~Ek~~SG~yLgel~R~~l~~~~~~~~lf~~~~~~~ 316 (451)
T 1bdg_A 239 V--KEPEVVINTEWGAFGEKGELDCWRTQFDKSMDIDSLHPGKQLYEKMVSGMYLGELVRHIIVYLVEQKILFRGDLPER 316 (451)
T ss_dssp C--SSSEEEEECCGGGTTTTSTTTTTCCHHHHHHHHTSSSTTSCTTHHHHSHHHHHHHHHHHHHHHHHTTSSGGGCCCSG
T ss_pred C--ccCcEEEecCcccCCCcccccCCCCcchhhhhhcCCCCCcccchhhhhhhHHHHHHHHHHHHhhcccccccccchHh
Confidence 4 67999999999999 322 79999999999999999999999999999999999999999999888999999999
Q ss_pred ccccccccCcccccccccCchhHhhhhhhhhhhcccc-cccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCcc
Q 011283 343 LSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVE-SSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGA 421 (489)
Q Consensus 343 l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~-~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~ 421 (489)
+..++.++|++||.|++|+++++..++.++++.++++ ++.+|+++++++|+.|++|+|+++|++|++++++++|
T Consensus 317 l~~~~~l~t~~ls~i~~d~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~va~~V~~RaA~lla~~ia~i~~~~~~----- 391 (451)
T 1bdg_A 317 LKVRNSLLTRYLTDVERDPAHLLYNTHYMLTDDLHVPVVEPIDNRIVRYACEMVVKRAAYLAGAGIACILRRINR----- 391 (451)
T ss_dssp GGSTTCSCTTHHHHHTTCCTTCCHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred hcCCCccchHHHhhhhccCccchHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----
Confidence 9999999999999999999999999999998867876 3799999999999999999999999999999999998
Q ss_pred cccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhccccc
Q 011283 422 IFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANSKF 485 (489)
Q Consensus 422 ~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~~~ 485 (489)
+.++|++|||||+++|.|++++++++++++.+ ..+|++.+++|||++|||++|++++|.
T Consensus 392 ---~~~~V~i~Ggv~~~~~~~~~~l~~~l~~~~~~--~~~i~~~l~~dgs~iGAAllA~~~~~~ 450 (451)
T 1bdg_A 392 ---SEVTVGVDGSLYKFHPKFCERMTDMVDKLKPK--NTRFCLRLSEDGSGKGAAAIAASCTRQ 450 (451)
T ss_dssp ---SEEEEEEESHHHHHCTTHHHHHHHHHHHHSCT--TCEEEEEECTTHHHHHHHHHHTTC---
T ss_pred ---CceEEEEeCchhcCchhHHHHHHHHHHHHhCC--CCcEEEEECCCccHHHHHHHHHHHhhc
Confidence 45789999999999999999999999998766 458999999999999999999998875
No 5
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=100.00 E-value=1.5e-97 Score=783.38 Aligned_cols=433 Identities=19% Similarity=0.254 Sum_probs=393.6
Q ss_pred hhhHHHHHhhhcCChhHHHHHHHHHhHhhhccccccCCCCcceeehhcccCcCCCccccEEEEecCCcceEEEEEEeCCc
Q 011283 33 APILTKLQKECAAPLPVLRNVADAMTADMRAGLVVDGGGELKMILSYVDALPTGNERGLFYALDLGGTNFRVLRVQLGGQ 112 (489)
Q Consensus 33 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~lV~l~g~ 112 (489)
++.+++|+++|.+|.++|++|+++|++||+ ||+.+ .|+++||||||+++|+|+|+|+||||||||||+|+++|++.|+
T Consensus 6 ~~~~~~~~~~f~~~~~~L~~i~~~~~~em~-gL~~~-~~~~~mlpt~v~~~P~G~E~G~~laiDlGGTnirv~lV~~~G~ 83 (457)
T 2yhx_A 6 XSLVEVHXXVFIVPPXILQAVVSILTTRXD-DXDSS-AASIPMVPGWVLKQVSGAQAGSFLAIVMGGGDLEVILISLAGR 83 (457)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHSS-SCSSCCEECCCCCCCCSCCCEEEEEEEECSSEEEEEEEEEETT
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHhc-CCCCC-CCCCccCccccCCCCCCCccceEEEEEeCCCeEEEEEEEeCCC
Confidence 467889999999999999999999999999 99875 3789999999999999999999999999999999999999875
Q ss_pred cceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeeccccccccceeeeeccce
Q 011283 113 EERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVLIKWTKGF 192 (489)
Q Consensus 113 ~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~li~wtKgf 192 (489)
.. .+...+++++|++.+.++++++|+||+++|++|+++++.. ..+.+++|||||||++|+++++|.|++|+|||
T Consensus 84 ~~--~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~----~~~~~~lGi~fs~P~~q~~~~~g~l~~wtKgf 157 (457)
T 2yhx_A 84 QE--SSIXASRSLAAAMSTTAIPSDLWGNXAXSNAAFSSXEFSS----XAGSVPLGFTFXEAGAKEXVIKGQITXQAXAF 157 (457)
T ss_dssp EE--EEEEEEEECCTTTTSCSCTHHHHHHHHHHHHHHHHHHTSS----CSSCEEEEEECCSCCCCSBTTCCBCSSCCTTC
T ss_pred ee--EEEeeEEEEcCCccCCCCHHHHHHHHHHHHHHHHhhcccc----cccccceeeEEEEEEEEeecCceEEEeeccCC
Confidence 21 1122247899988777889999999999999999876422 13467999999999999999999998999999
Q ss_pred eeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccCceEEEEEecCCcceeEEeeccccccccCCc-C-C
Q 011283 193 SVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVEQMDAIPKLQGNK-S-P 270 (489)
Q Consensus 193 ~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie~~~~i~~~~g~~-~-~ 270 (489)
++++|+ ||+++|+++++|+++|++|++|+||||||+|+|+|+++++.||+|+|||+|+||+++.++|+++++.. . .
T Consensus 158 ~i~~~~--~v~~~L~~~l~r~glpv~vval~NDa~~tll~e~~~~~~~~iglilGTGvgg~~i~~~~~i~kl~~~~~~~~ 235 (457)
T 2yhx_A 158 SLAXLX--KLISAMXNAXFPAGDXXXSVADIXDSHGILXXVNYTDAXIKMGIIFGSGVNAAYWCDSTXIGDAADGGXXGG 235 (457)
T ss_dssp CCSSCS--SBHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHCTTEEEEEEESSSEEEEEEECGGGSSCTTSCSSSCS
T ss_pred CcchhH--HHHHHHHHhHhhcCCcceeEEEEecchhhccchhhcCCccEEEEEECcEEEEEEEECCCccccccccccccc
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999986532 2 4
Q ss_pred CCCeeeeccccccc---CCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCccccccccc
Q 011283 271 SGRTIINTEWGAFS---KGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMPF 347 (489)
Q Consensus 271 ~g~miIn~E~G~f~---~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~ 347 (489)
.|+|+||+|||+|. ..+|+|+||..+|..|.||| ||||||+||+||||++|+++.++.+++.+|.+ .|+.|..+|
T Consensus 236 ~g~~~in~EwG~f~~~~~~lp~t~~D~~lD~~s~~pG-q~fEkm~SG~yLGel~R~il~~~~~~~~lf~~-~~~~l~~~~ 313 (457)
T 2yhx_A 236 AGXMXICCDQSSFRKAFPSLPQIXYLXTLNXXSPXAX-KTFXKNSXAKNXGQSLRDVLMXFKXXGQXHXX-XAXSFXAAN 313 (457)
T ss_dssp SCCEEEECCCTTTTTTCSSSCCCHHHHHHHHHSSCSC-CHHHHHHCGGGHHHHHHHHHHHHHHTTSSSSS-CCCSCCSTT
T ss_pred CCceEEEEEcccCCCCCCcCCccccccccccccCchH-HHHHHHhhhcCcHHHHHHHHHHHhcccccccc-cchhccccc
Confidence 68999999999993 24799999999999999999 99999999999999999999999998889999 999999999
Q ss_pred cccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCccccccee
Q 011283 348 VLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRT 427 (489)
Q Consensus 348 ~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~ 427 (489)
+|+|++||.++.|++++++.++.++.+.++++++.+|+++++++|..|++|||+|+|++|+++++++++ ++.
T Consensus 314 ~~~t~~ls~i~~d~~~~l~~~~~il~~~~~~~~t~~D~~~v~~ia~~V~~RaA~l~A~~iaai~~~~~~--------~~~ 385 (457)
T 2yhx_A 314 VENTSYPAKIQKLPHFDLRXXXDLFXGDQGIAXKTXMKXVVRRXLFLIAAYAFRLVVCXIXAICQKKGY--------SSG 385 (457)
T ss_dssp CSCTHHHHHHHHCCSSSCHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTC--------SSE
T ss_pred CcChHHHHHHhcCCchhhhHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--------CcE
Confidence 999999999999988888889999977788878899999999999999999999999999999999997 347
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCccc----ccceEEEeccCCcchhHHHHhhcccccc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEI----SKNVVIEHTKDGSGIGAALLASANSKFD 486 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~----~~~v~i~~a~Dgs~iGAA~~aa~~~~~~ 486 (489)
+|++|||| ++||.|++++++++++++.+.. ..+|+|++++|||++|||++||+++++.
T Consensus 386 ~V~vdGsv-~~~p~f~~~l~~~l~~l~~~~~~~~~~~~v~~~~~~dgsg~GAAl~aa~~~~~~ 447 (457)
T 2yhx_A 386 HIAAXGSX-RSYSGFSXNSATXNXNIYGWPQSAXXSKPIXITPAIDGXGAASXVIXSIASAXX 447 (457)
T ss_dssp EEEEESTT-TTSTTHHHHHHHHHHHHHCCCCSSGGGSSEEEEECCCTTTHHHHHHHHHHHHHH
T ss_pred EEEEECCc-ccCchHHHHHHHHHHHhhCcccccccCcceEEEECCCchhhhHHHHHHHHhhhh
Confidence 89999999 9999999999999999986532 5689999999999999999999987764
No 6
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=100.00 E-value=4.1e-94 Score=816.06 Aligned_cols=439 Identities=38% Similarity=0.626 Sum_probs=394.8
Q ss_pred hhhHHHHHhhhcCChhHHHHHHHHHhHhhhcccccc--CCCCcceeehhcccCcCCCccccEEEEecCCcceEEEEEEeC
Q 011283 33 APILTKLQKECAAPLPVLRNVADAMTADMRAGLVVD--GGGELKMILSYVDALPTGNERGLFYALDLGGTNFRVLRVQLG 110 (489)
Q Consensus 33 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~--~~s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~lV~l~ 110 (489)
.+.++++.++|.++.++|++|+++|++||++||+++ ..|+++||||||+++|+|+|+|+|||||||||||||++|++.
T Consensus 467 ~~~i~~~~~~f~~~~~~l~~i~~~~~~em~~gL~~~~~~~~~~~mlpt~v~~~P~G~E~G~~lalDlGGTn~Rv~~V~l~ 546 (917)
T 1cza_N 467 HRQIEETLAHFHLTKDMLLEVKKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDFLALDLGGTNFRVLLVKIR 546 (917)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHSHHHHTTCSSCCEECSCCSCCCSCCCEEEEEEEESSSSEEEEEEEEE
T ss_pred chhHHHHHhhhcCCHHHHHHHHHHHHHHHHHHhcccCCCCCCCceECCCCCCCCCCCcceEEEEEEECCCcEEEEEEEeC
Confidence 345678889999999999999999999999999854 358899999999999999999999999999999999999996
Q ss_pred CccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeeccccccccceeeeecc
Q 011283 111 GQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVLIKWTK 190 (489)
Q Consensus 111 g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~li~wtK 190 (489)
+...++++..+++|+||++++.+++++||+|||+||.+|+++++.. .+.+++|||||||++|+++++|.|++|||
T Consensus 547 ~g~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~l~~~~~~-----~~~l~lG~tfsfPv~q~~i~~~~L~~WtK 621 (917)
T 1cza_N 547 SGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDYMGIK-----GPRMPLGFTFSFPCQQTSLDAGILITWTK 621 (917)
T ss_dssp CSTTCEEEEEEEEECCCHHHHTSBHHHHHHHHHHHHHHHHHHHTCC-----SSCCEEEEEECSCEEEEETTEEEECCCCT
T ss_pred CCcceeEEeeeeEEecCcccccCCHHHHHHHHHHHHHHHHHHcCCC-----ccceeEEEEeeccccccccCccEECceec
Confidence 3322245444457999999888889999999999999999876532 35679999999999999999999999999
Q ss_pred ceeeecCCCchHHHHHHHHHHhc-CcceEeeeeeccccccccccccccCceEEEEEecCCcceeEEeeccccccccCCcC
Q 011283 191 GFSVSGTAGKDVVACLNEAMERQ-GLDMRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVEQMDAIPKLQGNKS 269 (489)
Q Consensus 191 gf~~~~~~G~dv~~lL~~al~~~-~l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie~~~~i~~~~g~~~ 269 (489)
||++++++|+||+++|+++++|+ ++||++++|+||||||+|+++|.++++.||+|+|||+|+||++++++|+++.+
T Consensus 622 gf~~~~~~g~dv~~~L~~al~r~~~~~v~~val~NDtv~tlla~~y~~~~~~iglIlGTG~na~y~e~~~~i~~~~g--- 698 (917)
T 1cza_N 622 GFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYEEPTCEVGLIVGTGSNACYMEEMKNVEMVEG--- 698 (917)
T ss_dssp TCCCBSCTTSBHHHHHHHHHHHHTSCCCEEEEEECHHHHHHHHHHTTCTTEEEEEEESSSEEEEEEEETTTCTTSSC---
T ss_pred ccccCCcCCCcHHHHHHHHHHhcCCCCceEEEEEEccHHHHHHhccCCCCcEEEEEEeCCeeEEEEEcCccccCcCC---
Confidence 99999999999999999999887 79999999999999999999999999999999999999999999999999864
Q ss_pred CCCCeeeecccccc-c-CC--CcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCccccccc
Q 011283 270 PSGRTIINTEWGAF-S-KG--LPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSM 345 (489)
Q Consensus 270 ~~g~miIn~E~G~f-~-~~--lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~ 345 (489)
+.|||+||+|||.| + .. +|+|+||..+|+.|.|||+||||||+||+||||++|+++.++.+++.+|.+..|+.+.+
T Consensus 699 ~~g~m~In~EwG~fg~~~~l~~~~T~~D~~~d~~s~~pG~q~~Ek~~SG~yLgel~R~il~~~~~~~~lf~~~~~~~l~~ 778 (917)
T 1cza_N 699 DQGQMCINMEWGAFGDNGCLDDIRTHYDRLVDEYSLNAGKQRYEKMISGMYLGEIVRNILIDFTKKGFLFRGQISETLKT 778 (917)
T ss_dssp CSSEEEEECCGGGTTTTSTTTTTCCHHHHHHHHTSTTTTSCTTGGGTSTTTHHHHHHHHHHHHHHTTSSGGGCCCTTTTS
T ss_pred CcCcEEEecccccCCCcccccCCCCchhhhhhhcCCCCCCCchHHhhhHhHHHHHHHHHHHHhcccccccccccchhhcc
Confidence 67999999999999 3 23 48999999999999999999999999999999999999999999889999999999999
Q ss_pred cccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCcccccc
Q 011283 346 PFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGK 425 (489)
Q Consensus 346 ~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~ 425 (489)
++.++|++||.|+.|+++ +..++.+++. ++++++.+|+++++++|..|++|||+|+|++|++++++++|+... ...
T Consensus 779 ~~~~~t~~ls~ie~d~~~-~~~~~~i~~~-~~~~~~~~D~~~~~~ia~~v~~RaA~l~a~~iaai~~~~~~~~~~--~~~ 854 (917)
T 1cza_N 779 RGIFETKFLSQIESDRLA-LLQVRAILQQ-LGLNSTCDDSILVKTVCGVVSRRAAQLCGAGMAAVVDKIRENRGL--DRL 854 (917)
T ss_dssp TTCSCHHHHHHHTCSSCC-HHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--SSE
T ss_pred CCccchHHhhhhhcCcch-hhHHHHHHHH-hCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc--Ccc
Confidence 999999999999999874 5567778875 787778899999999999999999999999999999999874321 112
Q ss_pred eeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhcccccc
Q 011283 426 RTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANSKFD 486 (489)
Q Consensus 426 ~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~~~~ 486 (489)
+.+|++|||||++||.|+++++++++++.+ .++|+|+.++|||++|||++||++.|++
T Consensus 855 ~~~V~vdGsv~~~~p~f~~~~~~~l~~l~~---~~~v~~~~~~dgsg~GAAl~aa~~~~~~ 912 (917)
T 1cza_N 855 NVTVGVDGTLYKLHPHFSRIMHQTVKELSP---KCNVSFLLSEDGSGKGAALITAVGVRLR 912 (917)
T ss_dssp EEEEEEECHHHHHCTTHHHHHHHHHHHHST---TEEEEEEECSSCSHHHHHHHHHHHHHHH
T ss_pred ceEEEECCHHHHcCcHHHHHHHHHHHHhCC---CCceEEEEecCChHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999863 2479999999999999999999988764
No 7
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=100.00 E-value=6e-85 Score=740.97 Aligned_cols=441 Identities=38% Similarity=0.631 Sum_probs=390.0
Q ss_pred CcccchhhHHHHHhhhcCChhHHHHHHHHHhHhhhccccccC--CCCcceeehhcccCcCCCccccEEEEecCCcceEEE
Q 011283 28 VNVSVAPILTKLQKECAAPLPVLRNVADAMTADMRAGLVVDG--GGELKMILSYVDALPTGNERGLFYALDLGGTNFRVL 105 (489)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~--~s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~ 105 (489)
.++++.+.+++|.++|.++.++|++|+++|++||++||+.+. .|+++||||||+++|+|+|+|+||||||||||+|++
T Consensus 14 ~~~~~~~~~~~~~~~f~~~~~~l~~i~~~~~~em~~gL~~~~~~~s~~~mlpt~v~~~P~G~E~G~~laiDlGGTnirv~ 93 (917)
T 1cza_N 14 LKDDQVKKIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDFIALDLGGSSFRIL 93 (917)
T ss_dssp --CHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHHCTTTGGGCSSCCEECCCCSCCCSCCCEEEEEEEESSSSEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCCCCCcccccccccCCCCCCCCcceEEEEEeCCCeEEEE
Confidence 445566678999999999999999999999999999998643 478999999999999999999999999999999999
Q ss_pred EEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeecccccccccee
Q 011283 106 RVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVL 185 (489)
Q Consensus 106 lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~l 185 (489)
+|++.|++...++...+++++|++++.+++++||+||+++|++|+++++.. .+.+++|||||||++|+++++|+|
T Consensus 94 lv~~~G~~~~~i~~~~~~~~ip~~~~~~~~~~lf~~Ia~~i~~~l~~~~~~-----~~~~~lGi~fs~P~~q~~~~~G~l 168 (917)
T 1cza_N 94 RVQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEKRKIK-----DKKLPVGFTFSFPCQQSKIDEAIL 168 (917)
T ss_dssp EEEEEEETTEEEEEEEEEECCCHHHHSSBHHHHHHHHHHHHHHHHHHHTCT-----TSCCCEEEEECSCEECSSTTCCEE
T ss_pred EEEecCCCcceEEEEEEEEECCcccccCCHHHHHHHHHHHHHHHHHhcCCC-----CCcccEEEEEccccccCcCCceEE
Confidence 999976422222222237899988777789999999999999999876532 245689999999999999999999
Q ss_pred eeeccceeeecCCCchHHHHHHHHHHhcC-cceEeeeeeccccccccccccccCceEEEEEecCCcceeEEeeccccccc
Q 011283 186 IKWTKGFSVSGTAGKDVVACLNEAMERQG-LDMRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVEQMDAIPKL 264 (489)
Q Consensus 186 i~wtKgf~~~~~~G~dv~~lL~~al~~~~-l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie~~~~i~~~ 264 (489)
++|+|||++++|+|+||+++|+++++|++ +|+++++|+||||||+|+|+|.++++.||+|+|||+|+||++++++|+++
T Consensus 169 ~~wtkgfni~~~~g~~v~~~L~~~l~r~g~~pv~~val~NDa~~tll~e~~~~~~~~iglilGTGvngg~i~~g~~i~~~ 248 (917)
T 1cza_N 169 ITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYDDQHCEVGLIIGTGTNACYMEELRHIDLV 248 (917)
T ss_dssp CCCCTTCCCBTCTTSBHHHHHHHHHHHHCSCCCCEEEEECHHHHHHHHHHHHCTTEEEEEEESSSEEEEEEEEGGGCTTS
T ss_pred EecccCCCCCcccCCchHHHHHHHHhhcCCCCceEEEEEEhhHHHHHHhhccCCCcEEEEEEECCcceEEEecCcccccc
Confidence 99999999999999999999999999887 89989999999999999999999999999999999999999999988888
Q ss_pred cCCcCCCCCeeeecccccc-c-CC--CcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCcc
Q 011283 265 QGNKSPSGRTIINTEWGAF-S-KG--LPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVP 340 (489)
Q Consensus 265 ~g~~~~~g~miIn~E~G~f-~-~~--lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~ 340 (489)
.| ..|||+||+|||+| . .. .|+|+||..+|..|+|||+||||||+||+||||++|+++.++.+++.+|.+..+
T Consensus 249 ~G---~~g~~~in~E~G~f~~~~~l~~~~t~~D~~~dc~~g~pg~g~~Ek~~SG~yLgel~r~~l~~~~~~~~~~~~~~~ 325 (917)
T 1cza_N 249 EG---DEGRMCINTEWGAFGDDGSLEDIRTEFDRAIDAYSLNPGKQLFEKMVSGMYLGELVRLILVKMAKEGLLFEGRIT 325 (917)
T ss_dssp SC---CSSEEEEECCGGGTTTTTTTTTTCCHHHHHHHHTSSSTTSSTTHHHHSHHHHHHHHHHHHHHHHHTTSSGGGCCC
T ss_pred cC---CCCceEEeccccccCCccccccCCCccccccccCCcCCCccHhHHHhhhhhHHHHHHHHHHHhhccccccccccc
Confidence 76 36899999999999 3 22 369999999999999999999999999999999999999999888888887778
Q ss_pred ccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHHhh--hccC
Q 011283 341 EKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKI--DEDS 418 (489)
Q Consensus 341 ~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~--~~~~ 418 (489)
+.+..++.++++++++++ ++++++..+..+++. ++++++.+|++.++++|+.|++|+|+++|++|+++++++ +|..
T Consensus 326 ~~l~~~~~l~t~~vs~~~-~~~~~~~~~~~i~~~-~~~~~~~~D~~~~~~~a~~v~~raa~llA~gia~ii~~l~~dp~~ 403 (917)
T 1cza_N 326 PELLTRGKFNTSDVSAIE-KNKEGLHNAKEILTR-LGVEPSDDDCVSVQHVCTIVSFRSANLVAATLGAILNRLRDNKGT 403 (917)
T ss_dssp TTTTSTTSSCHHHHHHHT-CTTTHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhccccccChHHHHHHh-cccccHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 888888999999999999 567778888888876 777778899999999999999999999999999999999 6621
Q ss_pred CcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhccccc
Q 011283 419 NGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANSKF 485 (489)
Q Consensus 419 ~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~~~ 485 (489)
. ..+.+|++||||++++|.|++++++++++++ +. .+++|+.++|||++|||++||++++.
T Consensus 404 ~----~~~~~IvigGgV~~~~~~~~~~l~~~l~~~~-~~--~~~~i~~a~dgs~~GAA~laa~~~~l 463 (917)
T 1cza_N 404 P----RLRTTVGVDGSLYKTHPQYSRRFHKTLRRLV-PD--SDVRFLLSESGSGKGAAMVTAVAYRL 463 (917)
T ss_dssp S----SEEEEEEEECHHHHHCSSHHHHHHHHHHHHC-TT--EEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred c----CcceEEEECCchhhccHHHHHHHHHHHHHhc-CC--CceEEEEeccchHHHHHHHHHhHhhh
Confidence 1 1246899999999999999999999999987 32 57999999999999999999987764
No 8
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=99.98 E-value=6.8e-32 Score=273.12 Aligned_cols=307 Identities=18% Similarity=0.183 Sum_probs=225.8
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeee
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGF 169 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~ 169 (489)
+++|+||+|||++|++++++.|+ ++.+. +++.| .+.+++++.|++.+.+++++ .+...+|+
T Consensus 2 ~~~lgiDiGgt~i~~~l~d~~G~---i~~~~--~~~~~-----~~~~~~~~~i~~~i~~~~~~---------~~i~gigi 62 (321)
T 3vgl_A 2 GLTIGVDIGGTKIAAGVVDEEGR---ILSTF--KVATP-----PTAEGIVDAICAAVAGASEG---------HDVEAVGI 62 (321)
T ss_dssp CEEEEEEECSSEEEEEEECTTCC---BCCCE--EEECC-----SSHHHHHHHHHHHHHHHHTT---------CCEEEEEE
T ss_pred cEEEEEEECCCEEEEEEECCCCC---EEEEE--EeeCC-----CCHHHHHHHHHHHHHHHHhh---------cCceEEEE
Confidence 47899999999999999999874 55432 23332 34788999999999998753 24688999
Q ss_pred EEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEEE
Q 011283 170 TFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAVI 245 (489)
Q Consensus 170 tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~iglI 245 (489)
++|+|++. ++|.+.. + .++ +|.+.++.+.|++.+ ++|| .|+||+++++++|.|. +.++.+.++
T Consensus 63 ~~pG~vd~---~~g~v~~-~--~~l-~w~~~~l~~~l~~~~---~~pv---~v~NDa~aaal~E~~~g~~~~~~~~~~l~ 129 (321)
T 3vgl_A 63 GAAGYVDD---KRATVLF-A--PNI-DWRHEPLKDKVEQRV---GLPV---VVENDANAAAWGEYRFGAGQGHDDVICIT 129 (321)
T ss_dssp EESSEECT---TSSCEEE-C--SSS-CCEEECHHHHHHHHH---CSCE---EEEEHHHHHHHHHHHHSTTTTCSSEEEEE
T ss_pred eccccEeC---CCCEEEe-C--CCC-CCcCCCHHHHHhhhh---CCCE---EEEehhhhHHHHHHHhCCCCCCCCEEEEE
Confidence 99999985 3454442 1 122 455779999999998 8997 7999999999999874 568999999
Q ss_pred ecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHH
Q 011283 246 LGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVL 325 (489)
Q Consensus 246 lGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l 325 (489)
+|||++++++.+++.+++.++.++|.|||.++.+ |..| .|++. +|+|.++|+.+|.+.++...
T Consensus 130 ~GtGiG~gii~~G~l~~G~~g~aGEiGh~~v~~~-g~~c--------------~cG~~--gclE~~~S~~al~~~~~~~~ 192 (321)
T 3vgl_A 130 LGTGLGGGIIIGNKLRRGRFGVAAEFGHIRVVPD-GLLC--------------GCGSQ--GCWEQYASGRALVRYAKQRA 192 (321)
T ss_dssp ESSSEEEEEEETTEECCCTTSCCCCGGGSBSSTT-CSBC--------------TTSCB--SBGGGTSSHHHHHHHHHHHH
T ss_pred eCcceEEEEEECCEEecCCCCCCccccceEecCC-CCCC--------------CCCCc--CcHHHhcCHHHHHHHHHHHh
Confidence 9999999999999999999988899999999754 5443 36764 79999999999976666543
Q ss_pred HHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccc
Q 011283 326 LKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGA 405 (489)
Q Consensus 326 ~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa 405 (489)
.... .. +..+........ .......+++. ++..+..|+.+++++++++|.
T Consensus 193 ~~~~-----------~~--------~~~~~~~~~~~~-~~~~~~~i~~~----------a~~gD~~a~~~~~~~~~~La~ 242 (321)
T 3vgl_A 193 NATP-----------EN--------AAVLLGLGDGSV-DGIEGKHISEA----------ARQGDPVAVDSFRELARWAGA 242 (321)
T ss_dssp HHCG-----------GG--------CHHHHHTTTSSS-TTCCHHHHHHH----------HHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCC-----------cc--------hhhhhhcccCcc-ccCCHHHHHHH----------HHcCCHHHHHHHHHHHHHHHH
Confidence 2210 00 000000000000 00012233433 233458999999999999999
Q ss_pred hhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhC-cccccceEEEec---cCCcchhHHHHhhc
Q 011283 406 GIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLG-TEISKNVVIEHT---KDGSGIGAALLASA 481 (489)
Q Consensus 406 ~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~-~~~~~~v~i~~a---~Dgs~iGAA~~aa~ 481 (489)
+|+++++.++| + .|+++|++....+.|.+.+++.+++... +.....++|+.+ +|++++|||.++..
T Consensus 243 ~i~~l~~~l~p--------~--~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~~~~~~i~~s~l~~~a~l~GAa~l~~~ 312 (321)
T 3vgl_A 243 GLADLASLFDP--------S--AFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAADLARQ 312 (321)
T ss_dssp HHHHHHHHHCC--------S--EEEEESGGGGGTHHHHHHHHHHHHHHCTTGGGSCCCEEEECTTGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC--------C--EEEEeChhhcchHHHHHHHHHHHHHhcccccccCCCEEEECCCCCcHHHHHHHHHHHh
Confidence 99999999998 2 5999999999999999999999998764 333456777766 79999999988765
Q ss_pred cccc
Q 011283 482 NSKF 485 (489)
Q Consensus 482 ~~~~ 485 (489)
.-..
T Consensus 313 ~~~~ 316 (321)
T 3vgl_A 313 GLEH 316 (321)
T ss_dssp C---
T ss_pred hhhh
Confidence 4443
No 9
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=99.97 E-value=2.6e-31 Score=268.52 Aligned_cols=310 Identities=18% Similarity=0.172 Sum_probs=226.7
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeee
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGF 169 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~ 169 (489)
+++|+||+|||++|++++++.|+ ++.+. +++.|.. .+.+++++.+.+.|.+++++.+... .+...+|+
T Consensus 6 ~~~lgiDiggt~~~~~l~d~~g~---il~~~--~~~~~~~---~~~~~~~~~l~~~i~~~~~~~~~~~----~~i~~igi 73 (326)
T 2qm1_A 6 KKIIGIDLGGTTIKFAILTTDGV---VQQKW--SIETNIL---EDGKHIVPSIIESIRHRIDLYNMKK----EDFVGIGM 73 (326)
T ss_dssp CEEEEEEECSSEEEEEEEETTCC---EEEEE--EEECCCT---TTTTTHHHHHHHHHHHHHHHTTCCG----GGEEEEEE
T ss_pred cEEEEEEECCCEEEEEEECCCCC---EEEEE--EEcCCCC---CCHHHHHHHHHHHHHHHHHHcCCCc----cceeEEEE
Confidence 57899999999999999999874 55433 3444432 3467899999999999998765321 35688999
Q ss_pred EEeeeccccccccceeeeeccceeeecCCCc-hHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEE
Q 011283 170 TFSFPVKQTSIDSGVLIKWTKGFSVSGTAGK-DVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAV 244 (489)
Q Consensus 170 tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~-dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~igl 244 (489)
++|+|++. .+|.+.. +. ++ +|.+. ++.+.|++.+ ++|| .|.||+++++++|+|. +.++.+.+
T Consensus 74 ~~pG~vd~---~~g~v~~-~~--~l-~w~~~~~l~~~l~~~~---~~pv---~v~ND~~aaa~~e~~~g~~~~~~~~~~l 140 (326)
T 2qm1_A 74 GTPGSVDI---EKGTVVG-AY--NL-NWTTVQPVKEQIESAL---GIPF---ALDNDANVAALGERWKGAGENNPDVIFI 140 (326)
T ss_dssp EESSEEET---TTTEEEC-BG--GG-TBCSCBCHHHHHHHHH---CSCE---EEEEHHHHHHHHHHHHSTTTTCSCEEEE
T ss_pred ecccceeC---CCCEEEe-cC--CC-CccCCchHHHHHHHHh---CCCE---EEecHHHHHHHHHHHhCCCCCCCcEEEE
Confidence 99999975 3465542 21 22 46678 9999999988 7887 7999999999999874 46789999
Q ss_pred EecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHH
Q 011283 245 ILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRV 324 (489)
Q Consensus 245 IlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~ 324 (489)
++|||++++++.+++.+++.++.++|.|||.++.+ |..| .|++ .+|+|.++|+.+|.+.++..
T Consensus 141 ~~GtGiG~giv~~G~l~~G~~g~aGE~Gh~~~~~~-g~~c--------------~cG~--~gcle~~~s~~~l~~~~~~~ 203 (326)
T 2qm1_A 141 TLGTGVGGGIVAAGKLLHGVAGCAGEVGHVTVDPN-GFDC--------------TCGK--RGCLETVSSATGVVRVARHL 203 (326)
T ss_dssp EESSSEEEEEEETTEECCCSSSCTTCGGGSBSCTT-SCBC--------------TTSS--BCBTHHHHSHHHHHHHHHHH
T ss_pred EECCceEEEEEECCEEeecCCCcccccCcEEECCC-CCcC--------------CCCC--ccchHhhhCHHHHHHHHHHH
Confidence 99999999999999999998888899999999864 4333 3565 47999999999996655432
Q ss_pred HHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCcccc
Q 011283 325 LLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAG 404 (489)
Q Consensus 325 l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~a 404 (489)
+ ... ..+..+. .+..+. ... ....+++. ++..+..|..+++++++++|
T Consensus 204 ~----~~~-----~~~~~~~-----------~~~~~~-~~~-~~~~v~~~----------a~~gd~~a~~i~~~~~~~L~ 251 (326)
T 2qm1_A 204 S----EEF-----AGDSELK-----------QAIDDG-QDV-SSKDVFEF----------AEKGDHFALMVVDRVCFYLG 251 (326)
T ss_dssp T----TTC-----CSCCHHH-----------HHHHHT-CCC-CHHHHHHH----------HHTTCHHHHHHHHHHHHHHH
T ss_pred h----hcc-----cccchhh-----------hccccc-cCC-CHHHHHHH----------HHcCCHHHHHHHHHHHHHHH
Confidence 1 100 0000000 000000 000 12223332 22345899999999999999
Q ss_pred chhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhHHHHhhc
Q 011283 405 AGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGAALLASA 481 (489)
Q Consensus 405 a~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGAA~~aa~ 481 (489)
.+++++++.++| + .|+++|++....+.|.+.+++.+++...+.....++|+.+ +|++.+|||.++..
T Consensus 252 ~~i~~l~~~l~p--------~--~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~~~ 321 (326)
T 2qm1_A 252 LATGNLGNTLNP--------D--SVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLALQ 321 (326)
T ss_dssp HHHHHHHHHHCC--------S--EEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHGGG
T ss_pred HHHHHHHHhcCC--------C--EEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHHHH
Confidence 999999999998 3 5999999999999999999999988754322234666654 68899999998765
Q ss_pred cc
Q 011283 482 NS 483 (489)
Q Consensus 482 ~~ 483 (489)
..
T Consensus 322 ~~ 323 (326)
T 2qm1_A 322 FS 323 (326)
T ss_dssp GC
T ss_pred hh
Confidence 43
No 10
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=99.97 E-value=1.4e-30 Score=273.75 Aligned_cols=343 Identities=16% Similarity=0.198 Sum_probs=246.7
Q ss_pred HHHhhhcCChhHHHHHHHHHhHhhhccccccCC----CC---cceeehhcccCcCCCccccEEEEecCCcceEEEEEEeC
Q 011283 38 KLQKECAAPLPVLRNVADAMTADMRAGLVVDGG----GE---LKMILSYVDALPTGNERGLFYALDLGGTNFRVLRVQLG 110 (489)
Q Consensus 38 ~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~----s~---~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~lV~l~ 110 (489)
++.+.+.++..++.+++++|.+ +||-.+.. |+ -+.+-++. .+.+++|+||+|||++|++++++.
T Consensus 58 ela~~~gls~~tv~~~v~~L~~---~gli~~~~~~~~s~~GR~~~~l~~~------~~~~~~lGIDiGgt~i~~~l~d~~ 128 (429)
T 1z05_A 58 DLSKESELAPASITKITRELID---AHLIHETTVQEAISRGRPAVGLQTN------NLGWQFLSMRLGRGYLTIALHELG 128 (429)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH---TTSEEEECHHHHHHHTSCCEEEEEC------CTTEEEEEEEEETTEEEEEEEETT
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---CCCEEeccccCCCCCCCCCeEEEEC------CCCCEEEEEEECCCEEEEEEECCC
Confidence 4455666777788888887776 56633211 00 11111111 245789999999999999999998
Q ss_pred CccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeeccccccccceeeeecc
Q 011283 111 GQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVLIKWTK 190 (489)
Q Consensus 111 g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~li~wtK 190 (489)
|+ ++.+. +++.+. .+.+++++.|++.|.+++++.+.. ..+...+|+++|+|++. .+|.+. +..
T Consensus 129 G~---il~~~--~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~----~~~i~gigi~~pG~vd~---~~g~v~-~~~ 191 (429)
T 1z05_A 129 GE---VLIDT--KIDIHE----IDQDDVLARLLFEIEEFFQTYAAQ----LDRVTSIAITLPGLVNS---EQGIVL-QMP 191 (429)
T ss_dssp SC---EEEEE--EEECCC----CBHHHHHHHHHHHHHHHHHHTTTT----CCEEEEEEEEESSEEET---TTTEEE-ECS
T ss_pred CC---EEEEE--EEcCCC----CCHHHHHHHHHHHHHHHHHhcCCC----cCceEEEEEeccCcEeC---CCCeEe-ecC
Confidence 74 55433 344432 247899999999999999876532 14578899999999985 346554 221
Q ss_pred ceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEEEecCCcceeEEeeccccccccC
Q 011283 191 GFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAVILGTGTNACYVEQMDAIPKLQG 266 (489)
Q Consensus 191 gf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~iglIlGTG~Na~yie~~~~i~~~~g 266 (489)
+++ |.+.|+.+.|++.+ ++|| .|.||+++++++|.|. +.++.+.+++|||+|++++.+++.+.+.++
T Consensus 192 --~l~-w~~~~l~~~L~~~~---~~pV---~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtGiG~giv~~G~l~~G~~g 262 (429)
T 1z05_A 192 --HYN-VKNLALGPEIYKAT---GLPV---FVANDTRAWALAEKLFGHSQDVDNSVLISIHHGLGAGIVLDGRVLQGRHG 262 (429)
T ss_dssp --SSB-CSSBCHHHHHHHHH---CSCE---EEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEEEEEEETTEECCTTTT
T ss_pred --CCC-CCCCCHHHHHHHHh---CCCE---EEechhHHHHHHHHHhCCCCCCCcEEEEEECCcEEEEEEECCEEeeCCCC
Confidence 232 67889999999988 8997 7999999999999874 568999999999999999999999999888
Q ss_pred CcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCcccccccc
Q 011283 267 NKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMP 346 (489)
Q Consensus 267 ~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~ 346 (489)
.++|.|||.++.. |..| .|++. +|+|.++|+..|.+.++..+ ..+ . .+.+.
T Consensus 263 ~AGEiGH~~v~~~-g~~c--------------~cG~~--gclE~~~S~~al~~~~~~~~----~~~-----~-~~~l~-- 313 (429)
T 1z05_A 263 NIGELGHIQIDPQ-GKRC--------------HCGNY--GCLETVASSQAIRDQVTARI----QAG-----E-PSCLA-- 313 (429)
T ss_dssp CTTBCTTSBCCTT-CCBC--------------TTSCB--SBTHHHHSHHHHHHHHHHHH----HTT-----C-CCTTT--
T ss_pred cccccCceEEcCC-CCCC--------------CCCCC--cchHHHhCHHHHHHHHHHHh----hcc-----c-ccccc--
Confidence 8899999999854 4333 36664 79999999999965554322 111 0 01010
Q ss_pred ccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCcccccce
Q 011283 347 FVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKR 426 (489)
Q Consensus 347 ~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~ 426 (489)
+.. .. ....+++. ++..+..|..+++++++++|.+++++++.++| +
T Consensus 314 ---~~~---------~~---~~~~i~~~----------a~~gD~~a~~il~~~~~~L~~~i~~l~~~ldP--------~- 359 (429)
T 1z05_A 314 ---TVE---------EI---SIEDICAA----------AADGDPLAVDVIQQLGRYLGAAIAIVINLFNP--------E- 359 (429)
T ss_dssp ---TCS---------SC---CHHHHHHH----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------S-
T ss_pred ---ccc---------CC---CHHHHHHH----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------C-
Confidence 000 00 12223332 23345889999999999999999999999998 3
Q ss_pred eEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhHHHHhh
Q 011283 427 TVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGAALLAS 480 (489)
Q Consensus 427 ~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGAA~~aa 480 (489)
.|+++|++....+.|.+.+++.+++...+.....++|+.+ +| +.+|||.++.
T Consensus 360 -~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~I~~s~l~~~-~~~GAa~l~~ 414 (429)
T 1z05_A 360 -KILIGGVINQAKSILYPSIEQCIREQSLPVYHQDLKLVESRFYKQ-ATMPGAALIK 414 (429)
T ss_dssp -EEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSCSSC-TTHHHHHHHH
T ss_pred -EEEEeCccccchHHHHHHHHHHHHHhcccccCCCcEEEEecCCCc-cHHHHHHHHH
Confidence 5999999999999999999999987644322235666655 67 9999998765
No 11
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=99.97 E-value=1.1e-30 Score=272.32 Aligned_cols=346 Identities=14% Similarity=0.121 Sum_probs=247.4
Q ss_pred HHHhhhcCChhHHHHHHHHHhHhhhccccccCC----CCcceeehhcccCcCCCccccEEEEecCCcceEEEEEEeCCcc
Q 011283 38 KLQKECAAPLPVLRNVADAMTADMRAGLVVDGG----GELKMILSYVDALPTGNERGLFYALDLGGTNFRVLRVQLGGQE 113 (489)
Q Consensus 38 ~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~----s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~lV~l~g~~ 113 (489)
++.+.+.++..++.+++++|.+ +||-.+.. |+----|+.+.-- .+.+++|+||+|||++|++++++.|+
T Consensus 35 ~la~~~~ls~~tv~~~v~~L~~---~g~i~~~~~~~~~~~GR~~~~l~~~---~~~~~~lgiDiG~t~i~~~l~d~~G~- 107 (406)
T 1z6r_A 35 DLSRLAQLAPASITKIVHEMLE---AHLVQELEIKEAGNRGRPAVGLVVE---TEAWHYLSLRISRGEIFLALRDLSSK- 107 (406)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHH---HTSEEEC-------------CEEEC---CTTCEEEEEEEETTEEEEEEEETTCC-
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---CCcEEeecccCCCCCCCCCeEEEEc---CCccEEEEEEEcCCEEEEEEEcCCCC-
Confidence 5556677888888888888876 57643211 1111122222211 24578999999999999999999874
Q ss_pred ceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeeccccccccceeeeecccee
Q 011283 114 ERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVLIKWTKGFS 193 (489)
Q Consensus 114 ~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~li~wtKgf~ 193 (489)
++.+. +++.|. .+.+++++.+.+.+.+++++.+.. ..+...+|+++|+|++. ++|.+. +.. +
T Consensus 108 --il~~~--~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~----~~~i~gigi~~pG~vd~---~~g~v~-~~~--~ 169 (406)
T 1z6r_A 108 --LVVEE--SQELAL----KDDLPLLDRIISHIDQFFIRHQKK----LERLTSIAITLPGIIDT---ENGIVH-RMP--F 169 (406)
T ss_dssp --EEEEE--EEECCS----SCSSCHHHHHHHHHHHHHHHTGGG----CCCEEEEEEEESSEEET---TTTEEE-ECT--T
T ss_pred --EEEEE--EecCCC----CCHHHHHHHHHHHHHHHHHhcCCC----cCceeEEEEEeecCEeC---CCCEEe-cCC--C
Confidence 55433 234331 346789999999999999876532 24578899999999985 456665 332 3
Q ss_pred eecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEEEecCCcceeEEeeccccccccCCcC
Q 011283 194 VSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAVILGTGTNACYVEQMDAIPKLQGNKS 269 (489)
Q Consensus 194 ~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~iglIlGTG~Na~yie~~~~i~~~~g~~~ 269 (489)
+++|.+.|+.+.|++.+ ++|| .|.||+++++++|.|. +.++.+.+++|||++++++.+++.+.+.++.++
T Consensus 170 l~~w~~~~l~~~l~~~~---~~pv---~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtGiG~giv~~G~l~~G~~g~AG 243 (406)
T 1z6r_A 170 YEDVKEMPLGEALEQHT---GVPV---YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 (406)
T ss_dssp CTTCSSBCHHHHHHHHH---SSCE---EEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEEEEEEETTEETTTTSSCCB
T ss_pred CCCccCCCHHHHHHHHH---CCCE---EEechhHHHHHHHHHhcCCCCCCcEEEEEECCcEEEEEEECCEEeecCCCcCc
Confidence 45677889999999998 8897 7999999999999874 567899999999999999999999999888889
Q ss_pred CCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCccccccccccc
Q 011283 270 PSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMPFVL 349 (489)
Q Consensus 270 ~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~ 349 (489)
|.|||.++.. |..| .|++. +|+|.++|+.+|-+.++..+ ... + +..+
T Consensus 244 EiGh~~v~~~-g~~c--------------~cG~~--gclE~~~S~~al~~~~~~~~---~~~---~----~~~~------ 290 (406)
T 1z6r_A 244 EIGHTQVDPY-GKRC--------------YCGNH--GCLETIASVDSILELAQLRL---NQS---M----SSML------ 290 (406)
T ss_dssp CGGGSBSCTT-SCBC--------------TTSCB--SBTHHHHSHHHHHHHHHHHH---TTC---T----TCGG------
T ss_pred cCCceEecCC-CCCC--------------CCCCc--cchHHHcCHHHHHHHHHHhh---hcc---c----cccc------
Confidence 9999999754 4333 36664 79999999999965544321 000 0 0000
Q ss_pred cCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEE
Q 011283 350 RTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVV 429 (489)
Q Consensus 350 ~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I 429 (489)
... .. ....+++. ++..+..|..+++++++++|.+++++++.++| + .|
T Consensus 291 ~~~---------~~---~~~~v~~~----------a~~gD~~a~~~l~~~~~~L~~~i~~l~~~ldP--------~--~I 338 (406)
T 1z6r_A 291 HGQ---------PL---TVDSLCQA----------ALRGDLLAKDIITGVGAHVGRILAIMVNLFNP--------Q--KI 338 (406)
T ss_dssp GSS---------CC---CHHHHHHH----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------S--EE
T ss_pred Ccc---------cC---CHHHHHHH----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------C--EE
Confidence 000 00 12233332 22345889999999999999999999999998 3 59
Q ss_pred EecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhHHHHh
Q 011283 430 AMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGAALLA 479 (489)
Q Consensus 430 ~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGAA~~a 479 (489)
+++|++....+.|.+.+++.+++...+.....+.|+.+ +|++.+|||++.
T Consensus 339 vlgG~i~~~~~~l~~~i~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~~~ 391 (406)
T 1z6r_A 339 LIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVK 391 (406)
T ss_dssp EEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSCCCCTTTTHHHHHH
T ss_pred EEeCccchhhHHHHHHHHHHHHHhcccccCCCcEEEEeCCCChHHHHHHHHHH
Confidence 99999999999999999999987744322235666654 789999998654
No 12
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=99.97 E-value=8e-31 Score=263.14 Aligned_cols=285 Identities=19% Similarity=0.194 Sum_probs=218.1
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeE
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFT 170 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~t 170 (489)
++|+||+|||++|++++++.+ ++.+. +++.|.. ..+++++.|.+.+.++++... .+...+|++
T Consensus 2 ~~lgiDiGgt~i~~~l~d~~~----~l~~~--~~~~~~~----~~~~~~~~i~~~i~~~~~~~~-------~~i~gigi~ 64 (302)
T 3vov_A 2 KVVGLDLGGTKIAAGVFDGKR----LLSKV--VVPTPKE----GGERVAEALAEAAERAEREAG-------VRGEAIGLG 64 (302)
T ss_dssp CEEEEEECSSEEEEEEECSSS----BSCCE--EEECCSS----CHHHHHHHHHHHHHHHHHHHT-------CCCSSEEEE
T ss_pred EEEEEEEcCCEEEEEEEeCCC----cEEEE--EEcCCCC----ChHHHHHHHHHHHHHHHhhcc-------CCceEEEEE
Confidence 589999999999999999863 33321 3444432 237899999999999886542 356889999
Q ss_pred EeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEEEe
Q 011283 171 FSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAVIL 246 (489)
Q Consensus 171 fSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~iglIl 246 (489)
+|+|++. ++|.+... .++++|.+.|+.+.|++.+ ++|| .|.||+++++++|.|. +.++.+.+++
T Consensus 65 ~pG~vd~---~~g~v~~~---~~~~~w~~~~l~~~l~~~~---~~pv---~v~NDa~aaal~E~~~g~~~~~~~~~~l~~ 132 (302)
T 3vov_A 65 TPGPLDF---RRGVIRFA---PNIPGVQDFPIRRILEEAT---GRPV---FLENDANAAALAEHHLGAAQGEESSLYLTV 132 (302)
T ss_dssp ESSCEET---TTTEEC------CCTTCTTCCHHHHHHHHH---SSCE---EEEEHHHHHHHHHHHHSTTTTCSCEEEEEE
T ss_pred ecccEeC---CCCEEEcC---CCCCCcCCCChHHHHHHhh---CCCE---EEEechHHHHHHHHHhCCCCCCCCEEEEEE
Confidence 9999985 34655422 2556777899999999988 8997 7999999999999874 5689999999
Q ss_pred cCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHH
Q 011283 247 GTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLL 326 (489)
Q Consensus 247 GTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~ 326 (489)
|||+|++++.+++.+++.++.++|.|||.++.+ |..| .|++. +|+|.++|+.+|.+.++...
T Consensus 133 GtGiG~gii~~g~l~~G~~g~aGEiGh~~v~~~-g~~c--------------~cg~~--gclE~~~s~~~l~~~~~~~~- 194 (302)
T 3vov_A 133 STGIGGGVVLGGRVLRGERGQGGELGHLTLLPG-GPAC--------------GCGLE--GCLEALAAGRALERDATYAF- 194 (302)
T ss_dssp SSSEEEEEEETTEECCCTTSCTTCGGGSBSSTT-CCBC--------------TTSCB--SBHHHHHSHHHHHHHHHHHH-
T ss_pred CCceeEEEEECCEEeeCCCCCCccccceEecCC-CCCC--------------CCCCc--chHHHHhCHHHHHHHHHHhh-
Confidence 999999999999999998888899999999754 4333 36664 79999999999955444311
Q ss_pred HHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccch
Q 011283 327 KMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAG 406 (489)
Q Consensus 327 ~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~ 406 (489)
. .. ++ ..++++. ++..+..|..+++++++++|.+
T Consensus 195 ---~----------~~------~~-----------------~~~i~~~----------a~~gd~~a~~~~~~~~~~l~~~ 228 (302)
T 3vov_A 195 ---Q----------RP------VD-----------------TRELFRL----------FQAGDPKAERLVLQAARYVGIG 228 (302)
T ss_dssp ---T----------SC------CC-----------------HHHHHHH----------HHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---C----------CC------CC-----------------HHHHHHH----------HHcCCHHHHHHHHHHHHHHHHH
Confidence 0 00 01 1123332 2223488999999999999999
Q ss_pred hhHHHHhhhccCCcccccceeEEEecCccc-cchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhHHHHhh
Q 011283 407 IVSILQKIDEDSNGAIFGKRTVVAMDGGLY-EHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGAALLAS 480 (489)
Q Consensus 407 laaii~~~~~~~~~~~~~~~~~I~i~Gsv~-~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGAA~~aa 480 (489)
++++++.++| + .|+++|++. ...+.|.+.+++.+++...+..... |+.+ +|++.+|||.++.
T Consensus 229 i~~l~~~~~p--------~--~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~--i~~s~lg~~a~~~GAa~l~~ 294 (302)
T 3vov_A 229 LASLVKAFDP--------G--VVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPP--LRRARLGAEAGLLGAALTAY 294 (302)
T ss_dssp HHHHHHHHCC--------S--EEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCC--EEECSSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHCC--------C--EEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCc--EEEcCCCCcHHHHHHHHHHH
Confidence 9999999998 3 699999999 8899999999999998765432223 5544 7899999998875
No 13
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=99.97 E-value=1.6e-30 Score=263.12 Aligned_cols=295 Identities=17% Similarity=0.211 Sum_probs=218.7
Q ss_pred ccccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeee
Q 011283 88 ERGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREI 167 (489)
Q Consensus 88 E~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~l 167 (489)
..+++|+||+|||++|++++++.|+ ++.+. +++.+.. .+.+++++.|.+.+.++++ .. .+...+
T Consensus 17 ~~~~~lgidiggt~i~~~l~d~~g~---il~~~--~~~~~~~---~~~~~~~~~i~~~i~~~~~-~~-------~~i~gi 80 (321)
T 3r8e_A 17 FQGMILGIDVGGTSVKFGLVTPEGE---IQNAT--RFMTADW---VNGIGFVESMKLEIGNFLK-QY-------PIVKGV 80 (321)
T ss_dssp --CCEEEEECCSSEEEEEEECTTCC---EEEEE--EEEHHHH---HTTTCHHHHHHHHHHHHHH-HC-------TTCCEE
T ss_pred cCcEEEEEEECCCEEEEEEEcCCCc---EEEEE--EEeCCCC---CCHHHHHHHHHHHHHHHHh-cc-------CCeeEE
Confidence 4578999999999999999999874 55543 2343322 3578899999999999886 11 356889
Q ss_pred eeEEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEE
Q 011283 168 GFTFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVA 243 (489)
Q Consensus 168 G~tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~ig 243 (489)
|+++|+|++. ++|.+...+ ++++|.+.++.+.|++.+. ++|| .|+||+++++++|.|. +.++.+.
T Consensus 81 gi~~pG~vd~---~~g~v~~~~---~l~~w~~~~l~~~l~~~~~--~~pV---~v~NDa~aaalaE~~~g~~~~~~~~v~ 149 (321)
T 3r8e_A 81 GIGWPGLVSL---DRTKVILLP---NIPSVVNVPIVEILRSEFP--HIHF---KIENDAKCAALGEYYFGENKRMQTFIL 149 (321)
T ss_dssp EEEESSEECT---TSCCEEEBT---TBCCCCSCCHHHHHHHHCT--TSEE---EEEEHHHHHHHHHHHHSTTTTCSSEEE
T ss_pred EEEecccEEC---CCCEEEeCC---CCccccCCCHHHHHHHHcC--CCCE---EEEchHHHHHHHHHHhCCCCCCCcEEE
Confidence 9999999984 456655322 4555778899999888652 5787 7999999999999874 5689999
Q ss_pred EEecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHH
Q 011283 244 VILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRR 323 (489)
Q Consensus 244 lIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~ 323 (489)
+++|||++++++.+++.+++.++.++|.|||. +.. .+|+|.++|+.+|-+.++.
T Consensus 150 l~~GtGiG~gii~~G~l~~G~~g~aGEiGh~~-~~~-------------------------~gclE~~~S~~al~~~~~~ 203 (321)
T 3r8e_A 150 LALGTGVGSGVMMNGKLFIGGRGNGTEVGHML-TTR-------------------------GKSLENQVGINHLIAYTHE 203 (321)
T ss_dssp EEESSSEEEEEEETTEECCCTTSCCCCGGGCB-CTT-------------------------SSBSHHHHSHHHHHHHHHH
T ss_pred EEECCceEEEEEECCEEecCCCCCCccccccc-CCC-------------------------CCcHHHhcCHHHHHHHHHH
Confidence 99999999999999998888887776777766 411 3799999999999666554
Q ss_pred HHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccc
Q 011283 324 VLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLA 403 (489)
Q Consensus 324 ~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~ 403 (489)
.... .. +..+. +. ..... ....+++. ++..++.|+.+++++++++
T Consensus 204 ~~~~---~~-------~~~~~---------~~---~~~~~---~~~~i~~~----------a~~gD~~a~~~~~~~~~~L 248 (321)
T 3r8e_A 204 QLAL---DV-------AKKSS---------LH---TIAEL---SPKVIADH----------AAQGDALALAVWADIGTII 248 (321)
T ss_dssp HHHH---CT-------TCCCS---------GG---GCSSC---CHHHHHHH----------HHTTCHHHHHHHHHHHHHH
T ss_pred Hhhc---cC-------ccccc---------cc---ccccC---CHHHHHHH----------HHcCCHHHHHHHHHHHHHH
Confidence 3211 10 11000 00 00000 12233433 2334589999999999999
Q ss_pred cchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhHHHHhh
Q 011283 404 GAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGAALLAS 480 (489)
Q Consensus 404 aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGAA~~aa 480 (489)
|.+|+++++.++| ..|+++|++....+.|.+.+++.+++...+.....++|+.+ +|++.+|||.++.
T Consensus 249 a~~i~~l~~~ldP----------~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~~ 318 (321)
T 3r8e_A 249 GESLVNIVRVMDL----------NNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLIM 318 (321)
T ss_dssp HHHHHHHHHHHCC----------CEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC----------CEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHHH
Confidence 9999999999998 36999999999999999999999998765443456778776 6889999998875
No 14
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=99.97 E-value=2.7e-30 Score=262.06 Aligned_cols=285 Identities=20% Similarity=0.191 Sum_probs=218.4
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeE
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFT 170 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~t 170 (489)
++|+||+|||++|++++++.|+ ++.+. +++.|. .+.+++++.|.+.+.++..+.+ ....+|++
T Consensus 25 ~~lgiDiGgt~i~~~l~d~~G~---il~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gigi~ 87 (327)
T 4db3_A 25 MYYGFDVGGTKIEFGAFNEKLE---RVATE--RVPTPT----DDYPLLLETIAGLVAKYDQEFA--------CEGKIGLG 87 (327)
T ss_dssp CEEEEEECSSEEEEEEECTTCC---EEEEE--EEECCT----TCHHHHHHHHHHHHHHHHHHHT--------SCCEEEEE
T ss_pred EEEEEEECCCEEEEEEEeCCCc---EEEEE--EecCCC----CCHHHHHHHHHHHHHHHHHhcC--------CccEEEEE
Confidence 6899999999999999999875 55543 344443 2578899999999988876543 24679999
Q ss_pred EeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEEEe
Q 011283 171 FSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAVIL 246 (489)
Q Consensus 171 fSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~iglIl 246 (489)
+|+|++. .+|.+. ++ +++.|.+.++.+.|++.+ ++|| .|+||+++++++|.|. +.++.+.+++
T Consensus 88 ~pG~vd~---~~g~v~-~~---~~~~~~~~~l~~~l~~~~---~~pV---~v~NDa~aaalgE~~~g~~~~~~~~~~l~~ 154 (327)
T 4db3_A 88 LPGMEDA---DDATVL-TV---NVPAAKGKPLRADLEAKI---GRSV---KIENDANCFALSEAWDEELQDAPSVMGLIL 154 (327)
T ss_dssp ESEEECT---TTCCEE-ES---SSGGGTTSCHHHHHHHHH---SSCC---EEEEHHHHHHHHHHTSTTTTTCSEEEEEEE
T ss_pred eeccEeC---CCCEEE-cC---CCccccCCCHHHHHHHHH---CCCE---EEecchhHHHHHHHHhCCCCCCCcEEEEEe
Confidence 9999985 345543 33 345567889999999998 8997 7999999999999874 5688999999
Q ss_pred cCCcceeEEeeccccccccCCcCCCCCeeeecc---------cccccCCCcccccccccccccCCcchhhhhhhhchhhH
Q 011283 247 GTGTNACYVEQMDAIPKLQGNKSPSGRTIINTE---------WGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYL 317 (489)
Q Consensus 247 GTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E---------~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yL 317 (489)
|||+|++++.+++.+++.++.++|.|||.++.. -|..| .|++ .+|+|.++|+.+|
T Consensus 155 GtGiG~gii~~G~l~~G~~g~aGEiGh~~v~~~~~~~~~~~~~g~~C--------------~cG~--~gclE~~~S~~al 218 (327)
T 4db3_A 155 GTGFGGGLIYEGKVFSGRNNVAGELGHMRLPLDAWFHLGDNAPLLGC--------------GCGK--KGCLDSYLSGRGF 218 (327)
T ss_dssp SSSEEEEEEETTEECCCTTSCTTCGGGSBCCHHHHHHTCTTCCCCBC--------------TTSC--BSBGGGTSSHHHH
T ss_pred CccceEEEEECCEEeecCCCcCcccccEEeccccccccccccCCCcC--------------CCCC--cchhHhhhCHHHH
Confidence 999999999999999998888899999999752 13223 3566 4799999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhh
Q 011283 318 GEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVK 397 (489)
Q Consensus 318 gei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~ 397 (489)
.+..+... .+ .++ ...+++. ++..+..|+.+++
T Consensus 219 ~~~~~~~~--------------~~------~~~-----------------~~~i~~~----------a~~gD~~a~~~~~ 251 (327)
T 4db3_A 219 ELLYAHYY--------------GE------EKK-----------------AIDIIKA----------NAAGDEKAAEHVE 251 (327)
T ss_dssp HHHHHHHH--------------SC------CCC-----------------HHHHHHH----------HHHTCHHHHHHHH
T ss_pred HHHHHHhc--------------CC------CCC-----------------HHHHHHH----------HHcCCHHHHHHHH
Confidence 55444211 00 001 1123332 2233488999999
Q ss_pred cCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchh
Q 011283 398 RGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIG 474 (489)
Q Consensus 398 RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iG 474 (489)
++++++|.+|+++++.++| + .|+++|++... +.|.+.+++.+++.+.+. ...++|+.+ +|++.+|
T Consensus 252 ~~~~~La~~i~~l~~~l~p--------~--~IvlgGgi~~~-~~l~~~l~~~l~~~~~~~-~~~~~i~~s~lg~~a~~~G 319 (327)
T 4db3_A 252 RFMELLAICFGNIFTANDP--------H--VVALGGGLSNF-ELIYEEMPKRVPKYLLSV-AKCPKIIKAKHGDSGGVRG 319 (327)
T ss_dssp HHHHHHHHHHHHHHHHHCC--------S--EEEEESGGGGC-THHHHHHHHHGGGGSCTT-CCCCEEEECSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--------C--EEEEeCcccch-HHHHHHHHHHHHHHhccc-cCCCEEEECCCCCcHHHHH
Confidence 9999999999999999998 2 59999999886 678889999888776442 245777766 7899999
Q ss_pred HHHHhh
Q 011283 475 AALLAS 480 (489)
Q Consensus 475 AA~~aa 480 (489)
||.++.
T Consensus 320 Aa~l~l 325 (327)
T 4db3_A 320 AAFLNI 325 (327)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 998764
No 15
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=99.97 E-value=4.1e-30 Score=265.98 Aligned_cols=325 Identities=13% Similarity=0.155 Sum_probs=236.8
Q ss_pred HHHhhhcCChhHHHHHHHHHhHhhhccccccC---CCCcceeehhcccCcCCCccccEEEEecCCcceEEEEEEeCCccc
Q 011283 38 KLQKECAAPLPVLRNVADAMTADMRAGLVVDG---GGELKMILSYVDALPTGNERGLFYALDLGGTNFRVLRVQLGGQEE 114 (489)
Q Consensus 38 ~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~---~s~~~Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~lV~l~g~~~ 114 (489)
++.+.+.++..++..+.++|.+ +||-.+. .|+-=-=|+.+.- -.+.+++|+||+|||++|++++++.|+
T Consensus 38 ~la~~~gls~~tv~~~v~~L~~---~gli~~~~~~~~~~GR~~~~l~~---~~~~~~~lGIDiGgt~i~~~l~d~~G~-- 109 (380)
T 2hoe_A 38 ELAEELGLTKTTVGEIAKIFLE---KGIVVEEKDSPKGVGRPTKSLKI---SPNCAYVLGIEVTRDEIAACLIDASMN-- 109 (380)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH---HTSEEEEECCC----CCCEEEEE---CGGGCEEEEEEECSSEEEEEEEETTCC--
T ss_pred HHHHHHCcCHHHHHHHHHHHHH---CCCEEeecCCCCCCCCCceEEEE---ccCCCeEEEEEECCCEEEEEEECCCCC--
Confidence 4445566777777777777766 5663321 1111011111111 123568999999999999999999874
Q ss_pred eeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeEEeeeccccccccceeeeeccceee
Q 011283 115 RVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFTFSFPVKQTSIDSGVLIKWTKGFSV 194 (489)
Q Consensus 115 ~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~tfSfP~~q~~i~~g~li~wtKgf~~ 194 (489)
++.+. +++.+.. .+.+++++.+.+.|.+++++.+.. ..+...+|+++|+|++. .+|.+.. .. ++
T Consensus 110 -vl~~~--~~~~~~~---~~~~~~~~~l~~~i~~~~~~~~~~----~~~i~gigi~~pG~vd~---~~g~v~~-~~--~l 173 (380)
T 2hoe_A 110 -ILAHE--AHPLPSQ---SDREETLNVMYRIIDRAKDMMEKL----GSKLSALTVAAPGPIDT---ERGIIID-PR--NF 173 (380)
T ss_dssp -EEEEE--EEECCSS---CCHHHHHHHHHHHHHHHHHHHHHT----TCCCCEEEEEESSCEET---TTTEECC-CS--SC
T ss_pred -EEEEE--EEccCCC---CCHHHHHHHHHHHHHHHHHhcCCC----cCcEEEEEEEeeccEEC---CCCEEec-cC--CC
Confidence 55433 3444322 257889999999999998775421 13568899999999975 3455542 21 22
Q ss_pred ecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccC--ceEEEEEecCCcceeEEeeccccccccCCcCCCC
Q 011283 195 SGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDE--DVMVAVILGTGTNACYVEQMDAIPKLQGNKSPSG 272 (489)
Q Consensus 195 ~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~--~~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g 272 (489)
+|.+.++.+.|++.+ ++|| .|+||+++++++|.|.+. ++.+.+++|||+|++++.+++.+.+.++.++|.|
T Consensus 174 -~w~~~~l~~~l~~~~---~~pV---~v~NDanaaalaE~~~g~~~~~~v~l~~GtGiG~giv~~G~l~~G~~g~aGEiG 246 (380)
T 2hoe_A 174 -PLSQIPLANLLKEKY---GIEV---WVENDADMGAVGEKWYTKRDDSFAWILTGKGIGAGIIIDGELYRGENGYAGEIG 246 (380)
T ss_dssp -TTBTSCHHHHHHHHH---CSEE---EEEEHHHHHHHHHHHHTTCCSCEEEEEESSSCEEEEEETTEECCCSSSCCCCGG
T ss_pred -CCcCCChHHHHHHHh---CCCE---EEechHHHHHHHHHHhCCCCCcEEEEEeCCceEEEEEECCEEeccCCCcccccc
Confidence 466889999999988 8887 799999999999988654 8999999999999999999999999988889999
Q ss_pred CeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCccccccccccccCc
Q 011283 273 RTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTP 352 (489)
Q Consensus 273 ~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~ 352 (489)
||.++.+ ..| .|++ .+|+|.++|+.+|.+ . .+
T Consensus 247 h~~v~~~--~~c--------------~cG~--~gclE~~~s~~~l~~-----------~-------------------~~ 278 (380)
T 2hoe_A 247 YTRVFNG--NEY--------------VFLE--DVCNENVVLKHVLSM-----------G-------------------FS 278 (380)
T ss_dssp GCEEECS--SSE--------------EEHH--HHHCHHHHHHHHHHH-----------C-------------------CC
T ss_pred ceEecCC--CCC--------------CCCC--ccHHHHHcCHHHHHH-----------H-------------------HH
Confidence 9999754 222 3454 589999999988833 0 00
Q ss_pred ccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEec
Q 011283 353 HICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMD 432 (489)
Q Consensus 353 ~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~ 432 (489)
. +++. ++..+..|..+++++++++|.+++++++.++| + .|+++
T Consensus 279 ~-----------------v~~~----------a~~gD~~a~~~l~~~~~~La~~i~~l~~~ldP--------~--~Ivlg 321 (380)
T 2hoe_A 279 S-----------------LAEA----------RDSGDVRVKEYFDDIARYFSIGLLNLIHLFGI--------S--KIVIG 321 (380)
T ss_dssp ------------------TTHH----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------C--EEEEE
T ss_pred H-----------------HHHH----------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C--EEEEc
Confidence 0 1111 11234788999999999999999999999998 3 58999
Q ss_pred CccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhHHHHhh
Q 011283 433 GGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGAALLAS 480 (489)
Q Consensus 433 Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGAA~~aa 480 (489)
|++....+.|.+.+++.+++...+. ..++++.+ +|++.+|||.++.
T Consensus 322 G~~~~~~~~l~~~l~~~l~~~~~~~--~~~~i~~s~~~~~a~~~GAa~l~~ 370 (380)
T 2hoe_A 322 GFFKELGENFLKKIKIEVETHLLYK--HSVDMSFSKVQEPVIAFGAAVHAL 370 (380)
T ss_dssp EGGGGGHHHHHHHHHHHHHHHCSSS--CCCEEEECCCCSCHHHHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHHHHhcCCC--CCcEEEEcCCCCcHHHHHHHHHHH
Confidence 9999989999999999998875432 34666654 6789999998864
No 16
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=99.97 E-value=3.4e-30 Score=257.88 Aligned_cols=281 Identities=16% Similarity=0.202 Sum_probs=208.2
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeee
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGF 169 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~ 169 (489)
.++|+||+|||++|++++++.|+ ++.+. +++++. .+.+++++.+.+.+ .+. .+...+|+
T Consensus 4 m~~lgiDiGgt~i~~~l~d~~G~---il~~~--~~~~~~----~~~~~~~~~i~~~~----~~~--------~~i~gigi 62 (297)
T 4htl_A 4 MKIAAFDIGGTALKMGVVLPHGE---IILTK--SAEISG----SDGDQILAEMKVFL----AEN--------TDVTGIAV 62 (297)
T ss_dssp CCEEEEEECSSEEEEEEECTTSC---EEEEE--EEECST----TCHHHHHHHHHHHH----HTC--------TTCCEEEE
T ss_pred cEEEEEEeCCCeEEEEEECCCCC---EEEEE--EecCCC----CCHHHHHHHHHHHH----hhc--------CCeeEEEE
Confidence 36899999999999999999875 55543 344432 23456666655443 221 34688999
Q ss_pred EEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEEE
Q 011283 170 TFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAVI 245 (489)
Q Consensus 170 tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~iglI 245 (489)
++|+|++. ++|.+..- .++++|.+.|+.+.|++.+ ++|| .|.||+++++++|+|. +.++.+.++
T Consensus 63 ~~pG~vd~---~~g~v~~~---~~l~~w~~~~l~~~l~~~~---~~pV---~v~NDa~aaal~E~~~g~~~~~~~~~~l~ 130 (297)
T 4htl_A 63 SAPGYVNP---KTGLITMG---GAIRRFDNFNLKEWLEAET---GLPV---AIENDANCALLAEKWLGKGQDLDDFLCLT 130 (297)
T ss_dssp EESSEECT---TTCEEEEC---TTCGGGTTEEHHHHHHHHH---CSCE---EEEEHHHHHHHHHHHHSTTTTCSSEEEEE
T ss_pred ecCcceeC---CCCEEEeC---CCCCCccCCCHHHHHHHHH---CcCE---EEecHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 99999985 45665432 2455677889999999988 8997 8999999999999874 568999999
Q ss_pred ecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHH
Q 011283 246 LGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVL 325 (489)
Q Consensus 246 lGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l 325 (489)
+|||++++++.+++.+++.++.++|.|||.++.. |.. .++.+|+|.++|+++|-+..+...
T Consensus 131 ~GtGiG~giv~~G~l~~G~~g~aGEiGh~~~~~~-~~~------------------~~~~~~le~~~s~~~l~~~~~~~~ 191 (297)
T 4htl_A 131 IGTGIGGGIFSNGELVRGGRFRAGEFGYMFSERP-GAF------------------RPGKYTLNETTTMLVLRRQYAELT 191 (297)
T ss_dssp ESSSEEEEEEETTEECCCTTSCCCCGGGSBSSCC-CSS------------------CGGGGBHHHHSSHHHHHHHHHHHH
T ss_pred ECcceEEEEEECCEEEecCCCCcccccceEecCC-CCc------------------CcccCcHHHhccHHHHHHHHHHHh
Confidence 9999999999999999998888889999988643 211 124579999999999955443211
Q ss_pred HHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccc
Q 011283 326 LKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGA 405 (489)
Q Consensus 326 ~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa 405 (489)
+ . +. ..++ ..++++. ++..+..|+.+++++++++|.
T Consensus 192 ------~-----~-~~-----~~~~-----------------~~~i~~~----------a~~gd~~a~~~~~~~~~~La~ 227 (297)
T 4htl_A 192 ------G-----R-PL-----EEIT-----------------GEEIFAN----------YDAHDAVSERLITEFYTGICT 227 (297)
T ss_dssp ------C-----C-CG-----GGCC-----------------HHHHHHH----------HHTTCHHHHHHHHHHHHHHHH
T ss_pred ------c-----C-Cc-----cCCC-----------------HHHHHHH----------HHcCCHHHHHHHHHHHHHHHH
Confidence 0 0 00 0011 1223332 223458899999999999999
Q ss_pred hhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhHHHHhhc
Q 011283 406 GIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGAALLASA 481 (489)
Q Consensus 406 ~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGAA~~aa~ 481 (489)
+|+++++.++| + .|+++|++... +.|.+.+++.+++... ..++|+.+ +|++.+|||.++..
T Consensus 228 ~i~~l~~~~~p--------~--~IvlgGgi~~~-~~~~~~l~~~l~~~~~----~~~~i~~s~lg~~a~~~GAa~l~~~ 291 (297)
T 4htl_A 228 GLYNLIYLFDP--------T--HIFIGGGITSR-PTFIAELKHHMESFGL----RDTIIETATHKNQAGLLGAVYHFLQ 291 (297)
T ss_dssp HHHHHHHHHCC--------S--EEEEESGGGGS-TTHHHHHHHHHTTTCC----TTCEEEECSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--------C--EEEEeCccccc-HHHHHHHHHHHHHhcc----CCCeEEECCcCChHHHHhHHHHHHH
Confidence 99999999998 3 59999999985 7789999988875432 34667655 78999999988764
No 17
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=99.96 E-value=8.7e-30 Score=257.95 Aligned_cols=286 Identities=18% Similarity=0.202 Sum_probs=213.9
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeee
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGF 169 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~ 169 (489)
+++|+||+|||++|++++++.|+ ++.+. +++.+. .+.+++++.|.+.+.++....+ ....+|+
T Consensus 24 ~~~lgiDiGgt~i~~~l~d~~g~---il~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~i~~igi 86 (327)
T 2ap1_A 24 AMYYGFDIGGTKIALGVFDSTRR---LQWEK--RVPTPH----TSYSAFLDAVCELVEEADQRFG--------VKGSVGI 86 (327)
T ss_dssp CEEEEEEECSSEEEEEEEETTCC---EEEEE--EEECCC----SCHHHHHHHHHHHHHHHHHHHT--------SCCEEEE
T ss_pred ceEEEEEECCCEEEEEEEeCCCC---EEEEE--EecCCC----CCHHHHHHHHHHHHHHHHHhcC--------CccEEEE
Confidence 46899999999999999999874 55432 334332 1467889999998888876432 2467999
Q ss_pred EEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEEE
Q 011283 170 TFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAVI 245 (489)
Q Consensus 170 tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~iglI 245 (489)
++|+|++. .+|++. ++ +++.|.+.|+.+.|++.+ ++|| .|+||+++++++|.+. +.++.++++
T Consensus 87 ~~pG~vd~---~~g~v~-~~---~~~~~~~~~l~~~l~~~~---~~pv---~v~NDa~aaalgE~~~g~~~~~~~~v~l~ 153 (327)
T 2ap1_A 87 GIPGMPET---EDGTLY-AA---NVPAASGKPLRADLSARL---DRDV---RLDNDANCFALSEAWDDEFTQYPLVMGLI 153 (327)
T ss_dssp EESSBSCC---TTSCCB-CT---TCTTTTTSCHHHHHHHHH---TSCE---EEEEHHHHHHHHHHTSTTGGGCSEEEEEE
T ss_pred EeeeeEEC---CCCEEE-cc---CCCccCCCChHHHHHHHH---CCCE---EEecHHHHHHHHHHHhCcCCCCCcEEEEE
Confidence 99999975 345554 33 345567889999999988 7887 7999999999999875 467999999
Q ss_pred ecCCcceeEEeeccccccccCCcCCCCCeeeeccc---------ccccCCCcccccccccccccCCcchhhhhhhhchhh
Q 011283 246 LGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEW---------GAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMY 316 (489)
Q Consensus 246 lGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~---------G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~y 316 (489)
+|||++++++.+++.+++.++.++|.|||.++..+ |..| .|++ .+|+|.++|+..
T Consensus 154 ~GtGiG~giv~~G~l~~G~~g~aGE~Gh~~~~~~~~~~~~~~~~g~~c--------------~cG~--~gcle~~~s~~~ 217 (327)
T 2ap1_A 154 LGTGVGGGLVLNGKPITGQSYITGEFGHMRLPVDALTLMGFDFPLRRC--------------GCGQ--MGCIENYLSGRG 217 (327)
T ss_dssp ESSSEEEEEEETTEEECCTTSCTTCGGGSBCCHHHHHHHCTTSCCCBC--------------TTSC--BSBTHHHHSHHH
T ss_pred ECCcEEEEEEECCEEeecCCCcccccccEEEecCcccccccccCCCcC--------------CCCc--hhhHHHHhCHHH
Confidence 99999999999999988888888999999997553 2222 3566 479999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhh
Q 011283 317 LGEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIV 396 (489)
Q Consensus 317 Lgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~ 396 (489)
|-+.++... ... .+ ...+++. ++..+..|+.++
T Consensus 218 l~~~~~~~~--------------~~~------~~-----------------~~~i~~~----------a~~gd~~a~~il 250 (327)
T 2ap1_A 218 FAWLYQHYY--------------DQS------LQ-----------------APEIIAL----------WEQGDEQAHAHV 250 (327)
T ss_dssp HHHHHHHHH--------------CCC------CC-----------------HHHHHHH----------HHTTCHHHHHHH
T ss_pred HHHHHHHhc--------------CCC------CC-----------------HHHHHHH----------HHcCCHHHHHHH
Confidence 855433211 000 00 1223332 222348899999
Q ss_pred hcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcch
Q 011283 397 KRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGI 473 (489)
Q Consensus 397 ~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~i 473 (489)
+++++++|.+++++++.++| + .|+++|++....+.|.+ +++.+++...+ ....++|+.+ ++++.+
T Consensus 251 ~~~~~~La~~i~~l~~~l~p--------~--~IvlgG~i~~~~~~~~~-l~~~l~~~~~~-~~~~~~i~~s~~~~~a~~~ 318 (327)
T 2ap1_A 251 ERYLDLLAVCLGNILTIVDP--------D--LLVIGGGLSNFTAITTQ-LAERLPRHLLP-VARAPRIERARHGDAGGMR 318 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--------S--EEEEESGGGGSTHHHHS-SGGGSGGGSCT-TCCCCEEEECSCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC--------C--EEEEeChhhcchhHHHH-HHHHHHHhhcc-ccCCCEEEEcCCCCcHHHH
Confidence 99999999999999999998 3 58999999988765555 88877766543 3345677765 688999
Q ss_pred hHHHHhh
Q 011283 474 GAALLAS 480 (489)
Q Consensus 474 GAA~~aa 480 (489)
|||.++.
T Consensus 319 GAa~lal 325 (327)
T 2ap1_A 319 GAAFLHL 325 (327)
T ss_dssp HHHHTTS
T ss_pred HHHHHHh
Confidence 9998763
No 18
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=99.96 E-value=4e-29 Score=251.70 Aligned_cols=285 Identities=16% Similarity=0.173 Sum_probs=189.5
Q ss_pred ccccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeee
Q 011283 88 ERGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREI 167 (489)
Q Consensus 88 E~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~l 167 (489)
+.+++|+||+|||++|++++++.|+ ++.+. +++.|.. ..+++++.|.+.+.+++++.+ .+...+
T Consensus 5 ~~~~~lgiDiGgt~i~~~l~d~~G~---il~~~--~~~~~~~----~~~~~~~~i~~~i~~~~~~~~-------~~i~gi 68 (310)
T 3htv_A 5 QHNVVAGVDMGATHIRFCLRTAEGE---TLHCE--KKRTAEV----IAPGLVSGIGEMIDEQLRRFN-------ARCHGL 68 (310)
T ss_dssp CEEEEEEEEECSSEEEEEEEETTSC---EEEEE--EEEHHHH----HTTCHHHHHHHHHHHHHHHHT-------EEEEEE
T ss_pred CCCEEEEEEeCCCEEEEEEECCCCC---EEEEE--EecCccc----cHHHHHHHHHHHHHHHHHhcC-------CCeeEE
Confidence 4568999999999999999999884 55532 2333322 256788888888888876543 235789
Q ss_pred eeEEeeeccccccccceeeeeccceeeecC--CCchHHHHHHHHHHhcCcceEeeeeecccccccccccc---ccCceEE
Q 011283 168 GFTFSFPVKQTSIDSGVLIKWTKGFSVSGT--AGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARY---WDEDVMV 242 (489)
Q Consensus 168 G~tfSfP~~q~~i~~g~li~wtKgf~~~~~--~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~---~~~~~~i 242 (489)
|+++|+|++. ++|.+...+ +++.+ .+.++.+.|++.+ ++|| .|.||++++++++.+ .+.++.+
T Consensus 69 gi~~pG~vd~---~~g~v~~~~---~l~~~~~~~~~l~~~l~~~~---~~pv---~v~NDanaaa~~e~~~~~~~~~~~~ 136 (310)
T 3htv_A 69 VMGFPALVSK---DKRTIISTP---NLPLTAADLYDLADKLENTL---NCPV---EFSRDVNLQLSWDVVENRLTQQLVL 136 (310)
T ss_dssp EEEESSCBCT---TSSCBCSCC---SSSCCHHHHTTHHHHHHHHH---TSCE---EEEEHHHHHHHHHHHHTTCTTSCEE
T ss_pred EEeccccEeC---CCCEEEeCC---CCCCccccCccHHHHHHHHh---CCCE---EEeeHHHHHHHHHHhhcccCCceEE
Confidence 9999999985 234433211 12111 1258899999988 8997 899999999987754 3567899
Q ss_pred EEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHH
Q 011283 243 AVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVR 322 (489)
Q Consensus 243 glIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R 322 (489)
++++|||+|++++.+++.+++.++.++|.|||.++.. |..| .|++. +|+|.++|+.+|.+..+
T Consensus 137 ~v~~GtGiG~gii~~G~l~~G~~g~aGEiGh~~v~~~-g~~C--------------~cG~~--GclE~~~S~~al~~~~~ 199 (310)
T 3htv_A 137 AAYLGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDM-TQHC--------------ACGNP--GCLETNCSGMALRRWYE 199 (310)
T ss_dssp EEEESSSEEEEEEETTEEECCSSSCCCC--------------------------------------CCSSSHHHHHHHHT
T ss_pred EEEeceeEEEEEEECCEEeecCCCCceeCcceEeCCC-CCcC--------------CCCCC--ceehhhhCHHHHHHHHH
Confidence 9999999999999999999999998999999999754 4333 36664 79999999999933211
Q ss_pred HHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCcc
Q 011283 323 RVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRL 402 (489)
Q Consensus 323 ~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l 402 (489)
+. .. .++. .++++. ..+ ++.++.++++.
T Consensus 200 -------~~--------~~------~~~~-----------------~~~~~~------~~~-----d~~~~~~~~~~--- 227 (310)
T 3htv_A 200 -------QQ--------PR------NYPL-----------------RDLFVH------AEN-----APFVQSLLENA--- 227 (310)
T ss_dssp -------TS--------CC------SSCG-----------------GGHHHH------HTT-----CHHHHHHHHHH---
T ss_pred -------hc--------cC------CCCH-----------------HHHHHH------HcC-----ChHHHHHHHHH---
Confidence 00 00 0111 112221 011 35566666654
Q ss_pred ccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhC-cccccceEEEec---cCCcchhHHHH
Q 011283 403 AGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLG-TEISKNVVIEHT---KDGSGIGAALL 478 (489)
Q Consensus 403 ~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~-~~~~~~v~i~~a---~Dgs~iGAA~~ 478 (489)
|.+|+++++.++| ..|++||++.+..+.|.+.+++.+++.+. +.....++|+.+ +|++.+|||.+
T Consensus 228 -a~~la~l~~~~dP----------~~IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s~lg~~ag~~GAa~l 296 (310)
T 3htv_A 228 -ARAIATSINLFDP----------DAVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAIL 296 (310)
T ss_dssp -HHHHHHHHHHHCC----------SEEEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEECCCCTTHHHHHHHHH
T ss_pred -HHHHHHHHHhhCC----------CEEEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEcCCCCcHHHHHHHHH
Confidence 4578899999998 36999999999988888999998887763 222346788776 79999999988
Q ss_pred hh
Q 011283 479 AS 480 (489)
Q Consensus 479 aa 480 (489)
+.
T Consensus 297 a~ 298 (310)
T 3htv_A 297 AH 298 (310)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 19
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=99.96 E-value=1.8e-28 Score=249.94 Aligned_cols=304 Identities=21% Similarity=0.234 Sum_probs=217.0
Q ss_pred cccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeee
Q 011283 89 RGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIG 168 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG 168 (489)
..++|+||+|||++|++++++.|+ ++.+. +.+.| .+.+++++.|.+.+.+++.+.... ..+...+|
T Consensus 29 ~~~~lgiDiGgt~i~~~l~d~~G~---il~~~--~~~~~-----~~~~~~~~~i~~~i~~~~~~~~~~----~~~i~gig 94 (343)
T 2yhw_A 29 TLSALAVDLGGTNLRVAIVSMKGE---IVKKY--TQFNP-----KTYEERINLILQMCVEAAAEAVKL----NCRILGVG 94 (343)
T ss_dssp EEEEEEEEECSSEEEEEEEETTSC---EEEEE--EEECC-----SSHHHHHHHHHHHHHHHHHHHHHT----TEEEEEEE
T ss_pred CcEEEEEEECCCEEEEEEECCCCc---EEEEE--EEcCC-----CCHHHHHHHHHHHHHHHHHhcccc----cCceEEEE
Confidence 468999999999999999999874 55432 23333 246788899999999988764321 13467899
Q ss_pred eEEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEE
Q 011283 169 FTFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAV 244 (489)
Q Consensus 169 ~tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~igl 244 (489)
+++|+|++. ++|.++.-+. ..++|.+.|+.+.|++.+ ++|| .|.||+++++++|.+. +.++.+.+
T Consensus 95 i~~pG~vd~---~~g~v~~~~~--~~~~w~~~~l~~~l~~~~---~~pv---~v~NDa~aaal~E~~~g~~~~~~~~v~i 163 (343)
T 2yhw_A 95 ISTGGRVNP---REGIVLHSTK--LIQEWNSVDLRTPLSDTL---HLPV---WVDNDGNCAALAERKFGQGKGLENFVTL 163 (343)
T ss_dssp EEESSEEET---TTTEEEECCT--TSSSCSSEECHHHHHHHH---CSCE---EEEEHHHHHHHHHHHTSTTTTCSCEEEE
T ss_pred EecccCEeC---CCCEEEeCCc--CCCCCcCCCHHHHHHHHH---CCCE---EEechhHHHHHHHHHhCCCCCCCcEEEE
Confidence 999999875 3465542210 123566789999999988 8897 7999999999999874 45789999
Q ss_pred EecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHH
Q 011283 245 ILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRV 324 (489)
Q Consensus 245 IlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~ 324 (489)
++|||++++++.+++.+.+.++.++|.|||.++.+ |..| .|++. +|+|.++|+..|-+.++..
T Consensus 164 ~~GtGiG~gii~~G~l~~G~~g~aGEiGh~~~~~~-g~~c--------------~cG~~--gclE~~~s~~al~~~~~~~ 226 (343)
T 2yhw_A 164 ITGTGIGGGIIHQHELIHGSSFCAAELGHLVVSLX-GPDC--------------SCGSH--GCIEAYASGMALQREAKKL 226 (343)
T ss_dssp EESSSEEEEEEETTEECCCTTSCTTCGGGCBCCC---CBC--------------TTSCB--SBHHHHHSHHHHHHHHHHH
T ss_pred EECCCEEEEEEECCEEecCCCCcccccCCEEEccC-CCcC--------------CCCCC--CcHHHhcCHHHHHHHHHHh
Confidence 99999999999999998988888899999999754 4333 35664 6999999999996655542
Q ss_pred HHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCcccc
Q 011283 325 LLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAG 404 (489)
Q Consensus 325 l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~a 404 (489)
.. .. +..+.. . ... .+. . .....+++. ++..++.|+.+++++++++|
T Consensus 227 ~~---~~--------~~~~~~-~-----~~~---~~~--~-~~~~~v~~~----------a~~gd~~a~~il~~~~~~La 273 (343)
T 2yhw_A 227 HD---ED--------LLLVEG-M-----SVP---KDE--A-VGALHLIQA----------AKLGNAKAQSILRTAGTALG 273 (343)
T ss_dssp HH---TT--------CSCCTT-C-----CC---------C-CCHHHHHHH----------HHTTCHHHHHHHHHHHHHHH
T ss_pred hc---cc--------cccccc-c-----ccc---ccc--c-CCHHHHHHH----------HHcCCHHHHHHHHHHHHHHH
Confidence 21 10 000000 0 000 000 0 012234433 33345899999999999999
Q ss_pred chhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec--cCCcchhHHHHhhc
Q 011283 405 AGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT--KDGSGIGAALLASA 481 (489)
Q Consensus 405 a~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a--~Dgs~iGAA~~aa~ 481 (489)
.+++++++.++| + .|+++|++. +.|.+.+++.+++...+. ...++|+.+ +|.+.+|||.++..
T Consensus 274 ~~i~~l~~~l~P--------~--~IvlgG~i~---~~~~~~l~~~l~~~~~~~-~~~~~i~~s~~~~~~~~GAa~l~~~ 338 (343)
T 2yhw_A 274 LGVVNILHTMNP--------S--LVILSGVLA---SHYIHIVKDVIRQQALSS-VQDVDVVVSDLVDPALLGAASMVLD 338 (343)
T ss_dssp HHHHHHHHHTCC--------S--EEEEESTTH---HHHHHHHHHHHHHHSCGG-GTTCEEEECCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--------C--EEEEeCCcH---HHHHHHHHHHHHHhcccc-cCCcEEEEccCCCchHHHHHHHHHH
Confidence 999999999998 3 588999996 578889988888765432 335666655 57789999988753
No 20
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=99.95 E-value=3.5e-29 Score=248.98 Aligned_cols=280 Identities=18% Similarity=0.186 Sum_probs=207.5
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeE
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFT 170 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~t 170 (489)
++|+||+|||++|++++++.|+ ++.+. +++.+.. .+.+++++.|.+.+.+++.+ ...+|++
T Consensus 2 ~~lgidiggt~~~~~l~d~~g~---il~~~--~~~~~~~---~~~~~~~~~i~~~i~~~~~~-----------~~~igi~ 62 (289)
T 2aa4_A 2 TTLAIDIGGTKLAAALIGADGQ---IRDRR--ELPTPAS---QTPEALRDALSALVSPLQAH-----------AQRVAIA 62 (289)
T ss_dssp CEEEEEECSSEEEEEEECTTCC---EEEEE--EEECCSS---CCHHHHHHHHHHHHTTTGGG-----------CSEEEEE
T ss_pred eEEEEEeCCCEEEEEEECCCCC---EEEEE--EecCCCC---CCHHHHHHHHHHHHHHHHhh-----------CCEEEEE
Confidence 4799999999999999999774 55433 2343321 24788999998888877542 1359999
Q ss_pred EeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccCc---eEEEEEec
Q 011283 171 FSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDED---VMVAVILG 247 (489)
Q Consensus 171 fSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~---~~iglIlG 247 (489)
+|+|++. ++|.+. ++ .++++|.+.|+.+.|++.+ ++|| .|.||+++++++|.+.+.. +.+.+++|
T Consensus 63 ~pG~vd~---~~g~v~-~~--~~~~~w~~~~l~~~l~~~~---~~pv---~v~NDa~aaa~~e~~~g~~~~~~~v~l~~G 130 (289)
T 2aa4_A 63 STGIIRD---GSLLAL-NP--HNLGGLLHFPLVKTLEQLT---NLPT---IAINDAQAAAWAEFQALDGDITDMVFITVS 130 (289)
T ss_dssp ESSEEET---TEEECS-SG--GGGGGGTTCCHHHHHHHHH---CSCE---EEEEHHHHHHHHHHHTSCTTCCCEEEEEES
T ss_pred eccceeC---CCCEEE-eC--CCCCcccCCChHHHHHHHH---CCCE---EEechHHHHHHHHHHhCCCCCceEEEEEeC
Confidence 9999975 344443 22 1344567889999999988 8887 7999999999999875321 89999999
Q ss_pred CCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHH
Q 011283 248 TGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLK 327 (489)
Q Consensus 248 TG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~ 327 (489)
||++++++.+++.+++.++.++|.|||.++.. |..| .|++. +|+|.++|+..|-+.++.
T Consensus 131 tGiG~gii~~G~l~~G~~g~aGE~Gh~~~~~~-g~~c--------------~cG~~--gcle~~~s~~~l~~~~~~---- 189 (289)
T 2aa4_A 131 TGVGGGVVSGCKLLTGPGGLAGHIGHTLADPH-GPVC--------------GCGRT--GCVEAIASGRGIAAAAQG---- 189 (289)
T ss_dssp SSEEEEEEETTEEECCTTSCCCCGGGSBSCTT-SCBC--------------TTSCB--SBHHHHHSHHHHHHTCCG----
T ss_pred ccEEEEEEECCEEeeCCCCCCccCCcEEECCC-CCcC--------------CCCCc--hhHHHHhCHHHHHHHHHH----
Confidence 99999999999998998888899999999854 4333 35664 799999999888321110
Q ss_pred HhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchh
Q 011283 328 MAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGI 407 (489)
Q Consensus 328 ~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~l 407 (489)
.+ + .. ....+++. ++..+..|+.+++++++++|.++
T Consensus 190 ---~~-------~-------~~-----------------~~~~v~~~----------a~~gd~~a~~i~~~~~~~L~~~i 225 (289)
T 2aa4_A 190 ---EL-------A-------GA-----------------DAKTIFTR----------AGQGDEQAQQLIHRSARTLARLI 225 (289)
T ss_dssp ---GG-------T-------TC-----------------CHHHHHHH----------HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---hc-------c-------CC-----------------CHHHHHHH----------HHcCCHHHHHHHHHHHHHHHHHH
Confidence 00 0 00 01223332 22234889999999999999999
Q ss_pred hHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhHHHHhh
Q 011283 408 VSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGAALLAS 480 (489)
Q Consensus 408 aaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGAA~~aa 480 (489)
+++++.++| + .|+++|++. ..+.|.+.+++.+++...+ ..++++.+ +|++.+|||.++.
T Consensus 226 ~~l~~~l~p--------~--~ivlgG~~~-~~~~~~~~l~~~l~~~~~~---~~~~i~~~~~~~~a~~~GAa~l~~ 287 (289)
T 2aa4_A 226 ADIKATTDC--------Q--CVVVGGSVG-LAEGYLALVETYLAQEPAA---FHVDLLAAHYRHDAGLLGAALLAQ 287 (289)
T ss_dssp HHHHHHHCC--------S--EEEEEHHHH-TSTTHHHHHHHHHTTSCGG---GCCEEEECSCSSCHHHHHHHHHHH
T ss_pred HHHHHhcCC--------C--EEEEeCccc-ccHHHHHHHHHHHHHhcCc---cCCEEEECCCCCchHHHHHHHHHh
Confidence 999999998 3 589999999 6788999999988775322 24556554 6889999998863
No 21
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=99.95 E-value=3.8e-28 Score=249.42 Aligned_cols=269 Identities=17% Similarity=0.138 Sum_probs=201.9
Q ss_pred ccccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHH---hhhhHHHhhcCccccCCCce
Q 011283 88 ERGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIAT---GLAKFAEKEAGKFHLPQGRQ 164 (489)
Q Consensus 88 E~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~---~i~~~~~~~~~~~~~~~~~~ 164 (489)
+.+++|+||+|||++|+++++ .|+ ++.+. .+++.+. . +.+++++.|.+ .+.+++. .+.
T Consensus 7 d~~~~lgiDIGgt~i~~~l~d-~G~---il~~~-~~~~~~~--~--~~~~~l~~i~~~~~~i~~~~~----------~~i 67 (366)
T 3mcp_A 7 DNRIVMTLDAGGTNFVFSAIQ-GGK---EIADP-VVLPACA--D--CLDKCLGNLVEGFKAIQAGLP----------EAP 67 (366)
T ss_dssp CCCEEEEEECSSSEEEEEEEE-TTE---ECSCC-EEEECCT--T--CHHHHHHHHHHHHHHHHTTCS----------SCC
T ss_pred CCCEEEEEEECcceEEEEEEE-CCE---EEEEE-EEEECCC--C--CHHHHHHHHHHHHHHHHHHhh----------cCC
Confidence 456799999999999999999 774 55432 0233332 1 57889999988 7766643 235
Q ss_pred eeeeeEEeeeccccccccceeeeeccceeeecCC-CchHHHHHHHHHHhcCcceEeeeeecccccccccccccc------
Q 011283 165 REIGFTFSFPVKQTSIDSGVLIKWTKGFSVSGTA-GKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD------ 237 (489)
Q Consensus 165 ~~lG~tfSfP~~q~~i~~g~li~wtKgf~~~~~~-G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~------ 237 (489)
..+||++|+|++. ++|.+..- .++++|. +.|+.+.|++.+ ++|| .|.||+++++++|+|.+
T Consensus 68 ~gIGIavPG~Vd~---~~G~i~~~---~nlp~w~~~~~l~~~L~~~~---g~PV---~veNDanaaAlgE~~~G~~p~~~ 135 (366)
T 3mcp_A 68 VAISFAFPGPADY---QAGIIGDL---PNFPSFRGGVALGPFLEDIF---GIPV---FINNDGSLFAYGEALTGVLPEIN 135 (366)
T ss_dssp CEEEEECCSSEET---TTTEECCC---TTCGGGTTCBCHHHHHHHHH---CSCE---EEECHHHHHHHHHHHTSHHHHHH
T ss_pred eEEEEEecceEeC---CCCEEEeC---CCcccccCCCCHHHHHHHHH---CCCE---EEechhhHHHHHHHHhCCCcccc
Confidence 7899999999985 45666532 2566787 899999999998 8997 89999999999998755
Q ss_pred -----------CceEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchh
Q 011283 238 -----------EDVMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQ 306 (489)
Q Consensus 238 -----------~~~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~ 306 (489)
.++.+++++|||+|++++.+++.+++.++.++|.|||. | . |++ .+
T Consensus 136 ~~l~~~g~~~~~~~~v~l~lGtGIG~givi~G~l~~G~~g~AGEiGH~~-~-----~----------------CG~--~G 191 (366)
T 3mcp_A 136 RRLREAGSTKRYKNLLGVTLGTGFGAGVVIDGELLRGDNAAGGYVWCLR-N-----K----------------KYP--EY 191 (366)
T ss_dssp HHHHHTTCCCCCCEEEEEEESSSEEEEEEETTEECCCTTSCTTCCTTSB-C-----S----------------SCT--TS
T ss_pred cccccccccCCCCcEEEEEECCcceEEEEECCEEecCCCCCCceeeccc-C-----C----------------CCC--Cc
Confidence 57899999999999999999999999888888999998 4 1 344 37
Q ss_pred hhhhhhchhhHHHHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccce
Q 011283 307 IYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARK 386 (489)
Q Consensus 307 ~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~ 386 (489)
|+|.++|+++|.+..+... .. ++ .++ ..++++. ++
T Consensus 192 clE~~~S~~al~~~~~~~~----~~--------~~------~~~-----------------~~~i~~~----------a~ 226 (366)
T 3mcp_A 192 IVEESVSIRAVMRVYAERS----GD--------AG------ART-----------------PKEIFEI----------AE 226 (366)
T ss_dssp BGGGTSSHHHHHHHHHHHS----SC--------CS------CCC-----------------HHHHHHH----------HH
T ss_pred ceeeeecHHHHHHHHHHhh----CC--------CC------CCC-----------------HHHHHHH----------Hh
Confidence 9999999999955444311 00 00 011 1223332 22
Q ss_pred ---eee-eehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccce
Q 011283 387 ---VVI-EVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNV 462 (489)
Q Consensus 387 ---~~~-~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v 462 (489)
..+ ..|..+++++++++|.+|+++++.++| .|++||++....+.|.+.+++.+++.+.+.....+
T Consensus 227 ~~~~gD~~~a~~~l~~~~~~Lg~~i~nl~~~ldP-----------~IviGGgi~~~~~~~~~~l~~~l~~~~~~~~~~~~ 295 (366)
T 3mcp_A 227 GIRPGNREAAIAAFEELGEMAGDALASAITLIDG-----------LIVIGGGLSGASKYILPVLLKEMNAQTGMMDGARF 295 (366)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----------EEEEESGGGGGHHHHHHHHHHHHHHHTTCC-----
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------EEEEEChhhhchHHHHHHHHHHHHHhcchhccCCc
Confidence 456 889999999999999999999999986 49999999999999999999999988776556677
Q ss_pred EEEec
Q 011283 463 VIEHT 467 (489)
Q Consensus 463 ~i~~a 467 (489)
+++.+
T Consensus 296 ~i~~s 300 (366)
T 3mcp_A 296 GRLQK 300 (366)
T ss_dssp ---CC
T ss_pred eEEEe
Confidence 77765
No 22
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=99.95 E-value=1.6e-28 Score=246.41 Aligned_cols=267 Identities=15% Similarity=0.220 Sum_probs=193.2
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeE
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFT 170 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~t 170 (489)
+||+||+|||++|++++++.|+ ++.+. ++|+. +.+++++.|.+.+.+ .+...+|++
T Consensus 4 ~~lgiDiGgt~i~~~l~d~~G~---il~~~----~~~t~----~~~~~l~~i~~~~~~-------------~~i~gigi~ 59 (302)
T 3epq_A 4 MLGGIEAGGTXFVCAVGREDGT---IIDRI----EFPTX----MPDETIEXVIQYFSQ-------------FSLQAIGIG 59 (302)
T ss_dssp CEEEEEECSSEEEEEEECTTSC---EEEEE----EEECC----CHHHHHHHHHHHHTT-------------SCCSEEEEE
T ss_pred EEEEEEECcceeEEEEEECCCc---EEEEE----EecCC----ChHHHHHHHHHHhcc-------------CCceEEEEE
Confidence 6899999999999999999874 55532 33432 356677666655432 135789999
Q ss_pred Eeeeccccc--cccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCceEEEE
Q 011283 171 FSFPVKQTS--IDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DEDVMVAV 244 (489)
Q Consensus 171 fSfP~~q~~--i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~~~igl 244 (489)
+|+|++... ...|.+...+ ..+|.+.|+.+.|++.+ ++|| .|.||+++++++|+|. +.++.+++
T Consensus 60 ~pG~vd~~~~~~~~G~i~~~~----~~~w~~~~l~~~l~~~~---~~pV---~v~NDanaaalaE~~~G~~~~~~~~~~l 129 (302)
T 3epq_A 60 SFGPVDNDXTSQTYGTITATP----XAGWRHYPFLQTVXNEM---XIPV---GFSTDVNAAALGEFLFGEAXGLDSCLYI 129 (302)
T ss_dssp ECSSEECCTTSTTTTEECCCS----STTTBTCCHHHHHHHHH---CSCE---EEEEHHHHHHHHHHHHSTTTTCSCEEEE
T ss_pred eceeeccccccccccEEecCC----CCCccCCChHHHHHHHh---CCCE---EEechhHHHHHHHHHhCCCCCCCcEEEE
Confidence 999998632 1125554321 24677889999999998 8997 8999999999999884 56899999
Q ss_pred EecCCcceeEEeeccccccccCCcCCCCCeeeecccc-cc-cCCCcccccccccccccCCcchhhhhhhhchhhHHHHHH
Q 011283 245 ILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWG-AF-SKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVR 322 (489)
Q Consensus 245 IlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G-~f-~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R 322 (489)
++|||+|++++.+++.+++.+ ++|.|||.++.... .+ | .|+..+ +|+|.++|+++|- |
T Consensus 130 ~~GtGiG~gii~~G~l~~G~~--agEiGh~~v~~~~~~~~~~--------------~C~~~~-gclE~~~S~~al~---~ 189 (302)
T 3epq_A 130 TIGTGIGAGAIVEGRLLQGLS--HPEMGHIYIRRHPDDVYQG--------------XCPYHG-DCFEGLASGPAIE---A 189 (302)
T ss_dssp EESSSEEEEEEETTEECCSSS--CCCGGGCCCCCCTTCCCCC--------------SBTTTB-SSHHHHHSHHHHH---H
T ss_pred EECCceEEEEEECCEEcccCC--CCccceEEEecCCCCCcCc--------------ccCCCC-cchhhhCCHHHHH---H
Confidence 999999999999999877764 47889998875311 11 1 233333 7999999999993 3
Q ss_pred HHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCcc
Q 011283 323 RVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRL 402 (489)
Q Consensus 323 ~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l 402 (489)
.+- +. . ..+ .-+..++++++++
T Consensus 190 ~~~----~~--------~-----------~~~-----------------------------------~~~~~~~~~~~~~ 211 (302)
T 3epq_A 190 RWG----XK--------A-----------ADL-----------------------------------SDIAQVWELEGYY 211 (302)
T ss_dssp HHS----SC--------G-----------GGG-----------------------------------TTCHHHHHHHHHH
T ss_pred Hhh----cc--------c-----------ccc-----------------------------------cchHHHHHHHHHH
Confidence 210 00 0 000 0024567788899
Q ss_pred ccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccc-------cceEEEec---cCCcc
Q 011283 403 AGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEIS-------KNVVIEHT---KDGSG 472 (489)
Q Consensus 403 ~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~-------~~v~i~~a---~Dgs~ 472 (489)
+|.+|+++++.++| + .|++||++....+ |.+.+++.+++.+..... ..+.|+.+ +|+++
T Consensus 212 La~~i~nl~~~ldP--------e--~IviGGgi~~~~~-l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~l 280 (302)
T 3epq_A 212 IAQALAQYILILAP--------X--XIILGGGVMQQXQ-VFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAGI 280 (302)
T ss_dssp HHHHHHHHHHHTCC--------S--CEEEESSGGGCTH-HHHHHHHHHHHHHTTCSCCGGGTTTGGGTEECCTTGGGHHH
T ss_pred HHHHHHHHHHHHCc--------h--hhhcCchhhhhHH-HHHHHHHHHHHHHhhhccCcccccccCceEEECCcCChHHH
Confidence 99999999999998 3 5999999998754 899999999887532110 12456655 79999
Q ss_pred hhHHHHhh
Q 011283 473 IGAALLAS 480 (489)
Q Consensus 473 iGAA~~aa 480 (489)
+|||.++.
T Consensus 281 ~GAa~l~~ 288 (302)
T 3epq_A 281 IGTLVLAH 288 (302)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 23
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=99.95 E-value=1.2e-27 Score=238.35 Aligned_cols=277 Identities=18% Similarity=0.204 Sum_probs=201.2
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeee
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGF 169 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~ 169 (489)
.++|+||+|||++|++++++.|+ ++.+. +++.| .+.+++++.|.+.+.+ . +...+|+
T Consensus 4 m~~lgidiggt~i~~~l~d~~g~---il~~~--~~~~~-----~~~~~~~~~i~~~i~~----~---------~i~gigi 60 (292)
T 2gup_A 4 MTIATIDIGGTGIKFASLTPDGK---ILDKT--SISTP-----ENLEDLLAWLDQRLSE----Q---------DYSGIAM 60 (292)
T ss_dssp CCEEEEEEETTEEEEEEECTTCC---EEEEE--EECCC-----SSHHHHHHHHHHHHTT----S---------CCSEEEE
T ss_pred cEEEEEEECCCEEEEEEECCCCC---EEEEE--EEeCC-----CCHHHHHHHHHHHHHh----C---------CCcEEEE
Confidence 35899999999999999999874 55432 33433 2466777777666544 1 2467999
Q ss_pred EEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeecccccccccccc--ccCceEEEEEec
Q 011283 170 TFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARY--WDEDVMVAVILG 247 (489)
Q Consensus 170 tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~--~~~~~~iglIlG 247 (489)
++|+|++. .+|.+... .+++.|.+.++.+.| +.+ ++|| .|.||+++++++|.+ ++.++.+.+++|
T Consensus 61 ~~pG~vd~---~~g~v~~~---~~~~~~~~~~l~~~l-~~~---~~pv---~v~NDa~aaa~~e~~~~~~~~~~v~l~~G 127 (292)
T 2gup_A 61 SVPGAVNQ---ETGVIDGF---SAVPYIHGFSWYEAL-SSY---QLPV---HLENDANCVGLSELLAHPELENAACVVIG 127 (292)
T ss_dssp EESSEECT---TTCBEESC---CSSGGGSSSBHHHHT-GGG---CCCE---EEEEHHHHHHHHHHHHCTTCSSEEEEEES
T ss_pred EecCcccC---CCCEEEec---CCCCcccCCCHHHHH-HHc---CCCE---EEechHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 99999985 34555421 133456678999988 766 8887 799999999999976 466789999999
Q ss_pred CCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHH
Q 011283 248 TGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLK 327 (489)
Q Consensus 248 TG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~ 327 (489)
||++++++.+++.+++.++.++|.|||.++. | .| + .+|+|.++|+..|-+.++...
T Consensus 128 tGiG~giv~~G~l~~G~~g~aGEiGh~~~~~-----~--------------~~-~--~gcle~~~s~~~l~~~~~~~~-- 183 (292)
T 2gup_A 128 TGIGGAMIINGRLHRGRHGLGGEFGYMTTLA-----P--------------AE-K--LNNWSQLASTGNMVRYVIEKS-- 183 (292)
T ss_dssp SSEEEEEEETTEEECCTTSCTTCGGGCBSSC-----C--------------SS-S--CCBHHHHHSHHHHHHHHHHHH--
T ss_pred CceEEEEEECCEEEecCCCCCccceeEEecc-----C--------------CC-C--CCcHHHhcCHHHHHHHHHHhh--
Confidence 9999999999998888888888888888763 1 01 2 479999999999954433211
Q ss_pred HhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchh
Q 011283 328 MAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGI 407 (489)
Q Consensus 328 ~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~l 407 (489)
+ . + .++ ...+++. ++..+..|..+++++++++|.++
T Consensus 184 ----~-----~--~------~~~-----------------~~~v~~~----------a~~gd~~a~~i~~~~~~~L~~~i 219 (292)
T 2gup_A 184 ----G-----H--T------DWD-----------------GRKIYQE----------AAAGNILCQEAIERMNRNLAQGL 219 (292)
T ss_dssp ----S-----S--C------CCC-----------------HHHHHHH----------HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----C-----C--C------CCC-----------------HHHHHHH----------HHcCCHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 000 1123332 22234889999999999999999
Q ss_pred hHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccc--cceEEEec---cCCcchhHHHHhhc
Q 011283 408 VSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEIS--KNVVIEHT---KDGSGIGAALLASA 481 (489)
Q Consensus 408 aaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~--~~v~i~~a---~Dgs~iGAA~~aa~ 481 (489)
+++++.++| + .|+++|++.. .+.|.+.+++.+++...+... ..++|+.+ +|++.+|||.++..
T Consensus 220 ~~l~~~l~p--------~--~IvlgG~i~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~~ 287 (292)
T 2gup_A 220 LNIQYLIDP--------G--VISLGGSISQ-NPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQ 287 (292)
T ss_dssp HHHHHHHCC--------S--EEEEESGGGG-CHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCC--------C--EEEEeCcccc-chHHHHHHHHHHHHhhcccccccCCCeEEEcccCChhhHHHHHHHHHH
Confidence 999999998 3 5899999964 789999999999876532211 23556544 78899999988764
No 24
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*
Probab=99.94 E-value=8.6e-27 Score=236.74 Aligned_cols=290 Identities=13% Similarity=0.132 Sum_probs=187.1
Q ss_pred cccEEEEecCCcceEEEEEEe-CCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeee
Q 011283 89 RGLFYALDLGGTNFRVLRVQL-GGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREI 167 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~l-~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~l 167 (489)
.+++|+||+||||+|++++++ .+. +... .++|+.. .+.+. +.+.+++++.+ .....+
T Consensus 13 ~~~~lgiDiGGT~i~~~l~dl~~g~---i~~~----~~~~~~~----~~~~~----~~i~~~~~~~~-------~~i~gi 70 (332)
T 1sz2_A 13 TKYALVGDVGGTNARLALCDIASGE---ISQA----KTYSGLD----YPSLE----AVIRVYLEEHK-------VEVKDG 70 (332)
T ss_dssp -CEEEEEEEETTEEEEEEEETTTCC---EEEE----EEEEGGG----CSCHH----HHHHHHHHHSC-------CCCCEE
T ss_pred CCEEEEEEechhheEEEEEECCCCc---EEEE----EEecCCC----cCCHH----HHHHHHHHhcC-------CCccEE
Confidence 467999999999999999997 453 4432 2334321 12233 33444544332 235789
Q ss_pred eeEEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcc-eEeeeeeccccccccccccc----------
Q 011283 168 GFTFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLD-MRVSALVNDTVGTLAGARYW---------- 236 (489)
Q Consensus 168 G~tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~-v~v~ai~NDtvatlla~~~~---------- 236 (489)
|+++|+|++...+ ....+.| . .+ .+.|++.| ++| | .|+||+++++++|.+.
T Consensus 71 gi~~pG~vd~~~~-~~~nl~w---------~-~~-~~~l~~~~---~~p~V---~v~NDanaaalgE~~~~~~~~~~~g~ 132 (332)
T 1sz2_A 71 CIAIACPITGDWV-AMTNHTW---------A-FS-IAEMKKNL---GFSHL---EIINDFTAVSMAIPMLKKEHLIQFGG 132 (332)
T ss_dssp EEEESSCCCSSEE-CCSSSCC---------C-EE-HHHHHHHH---TCSEE---EEEEHHHHHHHHGGGCCGGGEEECSS
T ss_pred EEEEeCceeCCEE-eeeCCCC---------c-CC-HHHHHHHh---CCCcE---EEEeCHhHHhccccccChhhheecCC
Confidence 9999999973111 1111233 3 46 57888887 887 7 7999999999999863
Q ss_pred ----cCceEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCccccccccc-ccccCCcchhhhhhh
Q 011283 237 ----DEDVMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDM-DAASINPGEQIYEKT 311 (489)
Q Consensus 237 ----~~~~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~-D~~s~~pg~~~~Ek~ 311 (489)
+.++.+.+++|||++++++.+++ .++++.++|.|||.++.. |.. +..+ ..-|.+.|.+|+|.+
T Consensus 133 g~~~~~~~~~~v~~GTGiG~giv~~g~--~G~~g~agE~GH~~v~~~-~~~---------~~~l~~~~c~~~g~gclE~~ 200 (332)
T 1sz2_A 133 AEPVEGKPIAVYGAGTGLGVAHLVHVD--KRWVSLPGEGGHVDFAPN-SEE---------EAIILEILRAEIGHVSAERV 200 (332)
T ss_dssp CCCCTTCCEEEEEESSSEEEEEEEEET--TEEEEEECCGGGSBCCCC-SHH---------HHHHHHHHHHHSSSCBGGGT
T ss_pred CCCCCCCcEEEEEcCccceEEEEecCC--CCeeeCCCCccccCcCCC-ChH---------HHHHHHHHHhccCCcchhhh
Confidence 45789999999999999999987 677777788888887643 210 0000 000112234799999
Q ss_pred hchhhHHHHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceee-ee
Q 011283 312 ISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVV-IE 390 (489)
Q Consensus 312 ~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~-~~ 390 (489)
+||+.|.++.+..... .. .. +..+ ...++++. ++.. ++
T Consensus 201 ~S~~~l~~~~~~~~~~---~~--------~~---~~~~-----------------~~~~i~~~----------a~~G~D~ 239 (332)
T 1sz2_A 201 LSGPGLVNLYRAIVKA---DN--------RL---PENL-----------------KPKDITER----------ALADSCT 239 (332)
T ss_dssp SSHHHHHHHHHHHHHH---TT--------CC---CCCC-----------------CHHHHHHH----------HHHTCCH
T ss_pred ccHHHHHHHHHHHhhc---cC--------CC---ccCC-----------------CHHHHHHH----------HHcCCCH
Confidence 9999997665542211 00 00 0000 12233333 2234 48
Q ss_pred ehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccc-hhHHH-HHHHHHHHH--hhCcc-cccceEEE
Q 011283 391 VCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEH-YTQYR-RYVHEAVTE--LLGTE-ISKNVVIE 465 (489)
Q Consensus 391 ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~-~~~f~-~~i~~~l~~--~~~~~-~~~~v~i~ 465 (489)
.|+.+++++++++|.+++++++.++| + ..|+++||+... .+.|. +.+++.+++ .+... ....+.+.
T Consensus 240 ~A~~~~~~~~~~Lg~~i~~l~~~l~P--------~-~gvvigGGi~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 310 (332)
T 1sz2_A 240 DCRRALSLFCVIMGRFGGNLALNLGT--------F-GGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLI 310 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC--------T-TEEEEECSSSGGGHHHHHHSSHHHHHHCCGGGHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC--------C-eEEEEEChhhhhHHHHhccHHHHHHHHhcCchhhHHhCceEEEE
Confidence 99999999999999999999999998 2 128899999986 45554 357777753 11110 01234444
Q ss_pred eccCCcchhHHHHhh
Q 011283 466 HTKDGSGIGAALLAS 480 (489)
Q Consensus 466 ~a~Dgs~iGAA~~aa 480 (489)
..+|++++|||.++.
T Consensus 311 ~~~~a~l~GAa~l~~ 325 (332)
T 1sz2_A 311 VHDNPGLLGSGAHLR 325 (332)
T ss_dssp CCSCHHHHHHHHHHH
T ss_pred ECCchhHHHHHHHHH
Confidence 457999999998865
No 25
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=99.93 E-value=3e-26 Score=236.31 Aligned_cols=294 Identities=14% Similarity=0.030 Sum_probs=199.2
Q ss_pred cccEEEEecCCcceEEEEEEe----CCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCce
Q 011283 89 RGLFYALDLGGTNFRVLRVQL----GGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQ 164 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~l----~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~ 164 (489)
..++|+||+|||++|++++++ .|+ ++.+. + ..|. .+.+++++.|.+.+.++..... ...
T Consensus 28 ~~~~lgiDiGgt~i~~~l~d~~~~~~g~---il~~~--~-~~~~----~~~~~~~~~i~~~i~~~~~~~~-------~~i 90 (373)
T 2q2r_A 28 APLTFVGDVGGTSARMGFVREGKNDSVH---ACVTR--Y-SMKR----KDITEIIEFFNEIIELMPASVM-------KRV 90 (373)
T ss_dssp SCEEEEEEECSSEEEEEEEEECGGGCEE---EEEEE--E-ECTT----CBGGGHHHHHHHHHHHSCHHHH-------TTE
T ss_pred CCeEEEEEEccccEEEEEEecccCCCcc---EEEEe--e-ecCC----CCHHHHHHHHHHHHHHHhhccc-------ccc
Confidence 347899999999999999998 663 55432 1 1232 2467888988888887654321 246
Q ss_pred eeeeeEEeeeccccccccceeeeeccceeeecCCCc-hHHHHHHHHHHhcCc-ceEeeeeeccccccccc----------
Q 011283 165 REIGFTFSFPVKQTSIDSGVLIKWTKGFSVSGTAGK-DVVACLNEAMERQGL-DMRVSALVNDTVGTLAG---------- 232 (489)
Q Consensus 165 ~~lG~tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~-dv~~lL~~al~~~~l-~v~v~ai~NDtvatlla---------- 232 (489)
..+||++|+|++. |.+. .. .++|.+. ++.+++++.+ ++ || .|+||+++++++
T Consensus 91 ~gigi~~pG~vd~-----g~v~-~~----~~~~~~~~~l~~~l~~~~---~~~pv---~v~NDa~aaalge~~l~~~~~~ 154 (373)
T 2q2r_A 91 KAGVINVPGPVTG-----GAVG-GP----FNNLKGIARLSDYPKALF---PPGHS---AILNDLEAGGFGVLAVSDAHVF 154 (373)
T ss_dssp EEEEEEESSCEET-----TTEE-CC----CSSSBSCEEGGGSCTTTS---CTTSE---EEEEHHHHHHHHHHHHHHTTCH
T ss_pred cEEEEEeeccccC-----CEEe-cc----CCCCCCcCCHHHHHHHhc---CCCCE---EEEccHhHHhccccccChhhhc
Confidence 7899999999885 3333 11 2234453 8887776655 67 77 799999999999
Q ss_pred -----cccc----------------cCceEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccc-cCCCccc
Q 011283 233 -----ARYW----------------DEDVMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAF-SKGLPLT 290 (489)
Q Consensus 233 -----~~~~----------------~~~~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f-~~~lp~t 290 (489)
|.|. +.++.+.+++|||+|++++.+++.+.++++.++|.|||.++.. |.+ |+.
T Consensus 155 ~~~~~E~~~~~~~~~~~~~~~g~~~~~~~~~~v~~GTGiG~gii~~g~l~~G~~~~aGE~Gh~~~~~~-~~c~cg~---- 229 (373)
T 2q2r_A 155 SEYFGVMWEGTQWRTCEQEPAGSVIGRGRCLVLAPGTGLGSSLIYYNPPMNQHIVVPLELGSQTLPMR-KDIDYIQ---- 229 (373)
T ss_dssp HHHEEEEECCTTTTTTCSSCTTSSCCSSCEEEEEESSSEEEEEEEECC---CEEEEEECGGGSBCCCS-SCHHHHH----
T ss_pred cccchhhcccccccccccCCCcCcCCCCCEEEEEeCCceeEEEEecCcccCCCcccccccceeecCCC-CCcchhH----
Confidence 5654 3478999999999999999999988887777778888888743 322 110
Q ss_pred ccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhh
Q 011283 291 EFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGS 370 (489)
Q Consensus 291 ~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~ 370 (489)
.+-..+. ..+|+|.++||.+|.++.+... . + . ++ ..+ ...
T Consensus 230 ----~l~~~~~--~~g~lE~~~S~~~l~~~~~~~~----~-~-----~-~~------~~~-----------------~~~ 269 (373)
T 2q2r_A 230 ----TLHAELK--LFPNYENMVSGAGLEFHYRQVV----R-G-----S-RP------PCS-----------------AGE 269 (373)
T ss_dssp ----HHHHHHT--SCCBHHHHSSHHHHHHHHHHHH----T-T-----S-SC------CCC-----------------HHH
T ss_pred ----HHHHHhh--ccccHhHhcCHHHHHHHHHHHh----c-C-----C-CC------CCC-----------------HHH
Confidence 0000001 1479999999999966554311 0 1 0 00 000 122
Q ss_pred hhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHH--HHHH
Q 011283 371 TLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRR--YVHE 448 (489)
Q Consensus 371 il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~--~i~~ 448 (489)
+++. ++..+..|+.+++++++++|.+++++++.++| + .|+++||.+...+.|.+ .+++
T Consensus 270 i~~~----------a~~gD~~a~~~l~~~~~~L~~~i~~l~~~l~p--------~--~IvlgGG~~~~~~~~~~~~~i~~ 329 (373)
T 2q2r_A 270 IAKL----------ASEGDANACKAMKKYHEYLMRVGSEASMALLP--------L--TIVLVGDNIVNNAFFYRNPQNLK 329 (373)
T ss_dssp HHHH----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------S--EEEECSHHHHHTHHHHHSHHHHH
T ss_pred HHHH----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------C--EEEEeCChHhCchhhhcchhHHH
Confidence 3332 22234889999999999999999999999998 3 48898884444488888 8888
Q ss_pred HHHHhhCccc------ccceEEEec---cCCcchhHHHHhh
Q 011283 449 AVTELLGTEI------SKNVVIEHT---KDGSGIGAALLAS 480 (489)
Q Consensus 449 ~l~~~~~~~~------~~~v~i~~a---~Dgs~iGAA~~aa 480 (489)
.+++.+.+.. ...+.++.+ +|++++|||.++.
T Consensus 330 ~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~a~l~GAa~l~~ 370 (373)
T 2q2r_A 330 EMHHEALNHEMERFGFQSRVSYLRQKKLLNLNLMGCYRCGL 370 (373)
T ss_dssp HHHHHHTCSGGGGGTSGGGCEEEEECSCCCHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhhhhcCCcEEEEecCCchhHHHHHHHHH
Confidence 8887654321 134555543 7899999998864
No 26
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=99.90 E-value=3e-24 Score=211.38 Aligned_cols=247 Identities=18% Similarity=0.250 Sum_probs=173.6
Q ss_pred CCccccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCcee
Q 011283 86 GNERGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQR 165 (489)
Q Consensus 86 G~E~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~ 165 (489)
..+..++|+||+|||++|++++++.+. .++... .+++.|.. .+.+++++.|.+.+++++.+.... ....
T Consensus 8 ~~~~~~~lgidiggt~i~~~l~dl~~g--~i~~~~-~~~~~~~~---~~~~~~~~~i~~~i~~~~~~~~~~-----~~~~ 76 (267)
T 1woq_A 8 SHKNAPLIGIDIGGTGIKGGIVDLKKG--KLLGER-FRVPTPQP---ATPESVAEAVALVVAELSARPEAP-----AAGS 76 (267)
T ss_dssp ---CCCEEEEEECSSEEEEEEEETTTT--EEEEEE-EEEECCSS---CCHHHHHHHHHHHHHHHHTSTTCC-----CTTC
T ss_pred cCCCCEEEEEEECCCEEEEEEEECCCC--eEEEEE-EecCCCcc---CCHHHHHHHHHHHHHHHHHhcccc-----Cccc
Confidence 344567899999999999999998632 344221 12333321 246789999999999987643210 1234
Q ss_pred eeeeEEeeeccccccccceeeeeccceeee-cCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccc----cCc-
Q 011283 166 EIGFTFSFPVKQTSIDSGVLIKWTKGFSVS-GTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW----DED- 239 (489)
Q Consensus 166 ~lG~tfSfP~~q~~i~~g~li~wtKgf~~~-~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~----~~~- 239 (489)
.+|+++|+|++ +|.+. ++ .+++ +|.+.|+.+.|++.+ ++|| .|.||+++++++|.+. +.+
T Consensus 77 ~igi~~pG~v~-----~g~v~-~~--~~l~~~w~~~~l~~~l~~~~---~~pV---~v~NDanaaalaE~~~g~~~~~~~ 142 (267)
T 1woq_A 77 PVGVTFPGIIQ-----HGVVH-SA--ANVDKSWLNTDIDALLTARL---GRPV---EVINDADAAGLAEARYGAGAGVKG 142 (267)
T ss_dssp CEEEEESSCEE-----TTEEC-CC--TTSCGGGTTCBHHHHHHHHH---TSCE---EEEEHHHHHHHHHHHHSTTTTCCS
T ss_pred eEEEEccceEc-----CCEEE-eC--CCCCCCCCCCCHHHHHHHHH---CCCE---EEeehhHHHHHHHHHhCCCCCCCC
Confidence 69999999986 35543 22 1333 567889999999998 8997 7999999999999874 334
Q ss_pred eEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHH
Q 011283 240 VMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGE 319 (489)
Q Consensus 240 ~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLge 319 (489)
+.+.+++|||++++++.+++.+++ +|.|||.++ + .|+|.++|+.+|.
T Consensus 143 ~~~~l~~GtGIG~giv~~G~l~~G-----gEiGh~~v~-------------------------~--~~lE~~~S~~~l~- 189 (267)
T 1woq_A 143 TVLVITLGTGIGSAFIFDGKLVPN-----AELGHLEID-------------------------G--HDAETKASAVARE- 189 (267)
T ss_dssp EEEEEEESSSEEEEEEETTEEETT-----CCGGGCEET-------------------------T--EEHHHHHSHHHHH-
T ss_pred cEEEEEECcceEEEEEECCEEccC-----ceeeeEEec-------------------------C--ccHHHHhCHHHHh-
Confidence 578999999999999999876543 244444432 1 2699999998762
Q ss_pred HHHHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcC
Q 011283 320 IVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRG 399 (489)
Q Consensus 320 i~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~Ra 399 (489)
+ .. ..++++
T Consensus 190 --~--------~~-------------------------------------------------------------~~~~~~ 198 (267)
T 1woq_A 190 --R--------DG-------------------------------------------------------------LSWDEY 198 (267)
T ss_dssp --H--------TT-------------------------------------------------------------CCHHHH
T ss_pred --h--------cc-------------------------------------------------------------hhHHHH
Confidence 1 00 012345
Q ss_pred CccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhHH
Q 011283 400 GRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGAA 476 (489)
Q Consensus 400 A~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGAA 476 (489)
++++|.+++++++.++| + .|+++|++....+.|.+.++ ..++++.+ +|++.+|||
T Consensus 199 ~~~l~~~l~~l~~~ldP--------~--~IvlgG~i~~~~~~~~~~~~------------~~~~i~~s~l~~~a~~~GAa 256 (267)
T 1woq_A 199 SVLLQRYFSHVEFLFSP--------E--LFIVGGGISKRADEYLPNLR------------LRTPIVPAVLRNEAGIVGAA 256 (267)
T ss_dssp HHHHHHHHHHHHHHHCC--------S--EEEEESGGGGGGGGTGGGCC------------CSSCEEECSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--------C--EEEEeChhhcccHHHHHhhc------------cCceEEECCcCCcHHHHHHH
Confidence 56788899999999998 3 59999999998887776553 13455544 788999999
Q ss_pred HHhhccc
Q 011283 477 LLASANS 483 (489)
Q Consensus 477 ~~aa~~~ 483 (489)
.++....
T Consensus 257 ~l~~~~~ 263 (267)
T 1woq_A 257 IEIALQH 263 (267)
T ss_dssp HHHHHHC
T ss_pred HHHHhcc
Confidence 9876543
No 27
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=99.88 E-value=2.2e-23 Score=208.22 Aligned_cols=280 Identities=16% Similarity=0.136 Sum_probs=184.0
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeE
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFT 170 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~t 170 (489)
++|+||+|||++|++++++.|+ ++.+. +++.|... ..+.+++++.|.+.+.+++.+. ...+|++
T Consensus 3 ~~lgiDiGgt~~~~~l~d~~g~---i~~~~--~~~~~~~~-~~~~~~~~~~i~~~i~~~~~~~----------~~~igi~ 66 (299)
T 2e2o_A 3 IIVGVDAGGTKTKAVAYDCEGN---FIGEG--SSGPGNYH-NVGLTRAIENIKEAVKIAAKGE----------ADVVGMG 66 (299)
T ss_dssp CEEEEEECSSCEEEEEECTTSC---EEEEE--EESCCCHH-HHCHHHHHHHHHHHHHHHHTSC----------CSEEEEE
T ss_pred EEEEEEeCCCcEEEEEEcCCCC---EEEEE--eCCCCCcc-cCCHHHHHHHHHHHHHHHHhcC----------CCEEEEE
Confidence 5899999999999999999874 55432 23433211 1247889999999998886531 3568888
Q ss_pred EeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccCceEEEEEecCCc
Q 011283 171 FSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDEDVMVAVILGTGT 250 (489)
Q Consensus 171 fSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~ 250 (489)
+|+| +. .++. .++.+.|++ + ++|| .|.||++++++++.+ .++.+.+++|||+
T Consensus 67 ~~G~-~~---~~~~---------------~~l~~~l~~-~---~~pv---~v~ND~~aaa~~e~~--~~~~v~l~~GTG~ 118 (299)
T 2e2o_A 67 VAGL-DS---KFDW---------------ENFTPLASL-I---APKV---IIQHDGVIALFAETL--GEPGVVVIAGTGS 118 (299)
T ss_dssp ETTC-CS---HHHH---------------HHHHHHHTT-S---SSEE---EEEEHHHHHHHHHHT--TSCEEEEEESSSE
T ss_pred cCCC-Cc---hhHH---------------HHHHHHHHh-C---CCCE---EEeCcHHHHHhhccC--CCCeEEEEecCCE
Confidence 8888 64 1222 267777766 5 6776 799999999999976 5789999999994
Q ss_pred ceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcch----hhhhhhhchhhHHHHHHHHHH
Q 011283 251 NACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGE----QIYEKTISGMYLGEIVRRVLL 326 (489)
Q Consensus 251 Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~----~~~Ek~~SG~yLgei~R~~l~ 326 (489)
+.+++ +.+.++.++|.|||.++ + |.-| .|++.|. .|+|.++|+..|.+.++..+
T Consensus 119 ----i~~g~-~~G~~~~aGE~Gh~~~~-~-g~~c--------------~cG~~gl~~~~~~le~~~s~~~l~~~~~~~~- 176 (299)
T 2e2o_A 119 ----VVEGY-NGKEFLRVGGRGWLLSD-D-GSAY--------------WVGRKALRKVLKMMDGLENKTILYNKVLKTI- 176 (299)
T ss_dssp ----EEEEE-CSSCEEEEECSCTTTCC-T-TSHH--------------HHHHHHHHHHHHHHTTSSCCCHHHHHHHHHT-
T ss_pred ----EEEEE-cCCeEEecCCcCCCcCC-C-ccHH--------------HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-
Confidence 33444 45555556677787776 2 3221 2344211 19999999999965544311
Q ss_pred HHhhhccccCCCccccccccccccCcccccccccCchhH-hhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccc
Q 011283 327 KMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDL-QAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGA 405 (489)
Q Consensus 327 ~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~-~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa 405 (489)
. ...+..+.. .+..- .....+. .....+++. ++..++.|+.+++++++++|.
T Consensus 177 ---~------~~~~~~l~~-------~~~~~-~~~~~~~~~~~~~v~~~----------a~~gd~~a~~il~~~~~~La~ 229 (299)
T 2e2o_A 177 ---N------VKDLDELVM-------WSYTS-SCQIDLVASIAKAVDEA----------ANEGDTVAMDILKQGAELLAS 229 (299)
T ss_dssp ---T------CCSHHHHHH-------HHHHH-TTCHHHHHTTHHHHHHH----------HHTTCHHHHHHHHHHHHHHHH
T ss_pred ---C------CCCHHHHHH-------HHHcC-CCCHHHHHHHHHHHHHH----------HhcCCHHHHHHHHHHHHHHHH
Confidence 0 000000000 00000 0000000 012233332 333458999999999999999
Q ss_pred hhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhc
Q 011283 406 GIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASA 481 (489)
Q Consensus 406 ~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~ 481 (489)
+++++++.++| + .|+++||+... +.|.+.+++.+++. .+..-..++++.+|||.++..
T Consensus 230 ~i~~l~~~l~p--------~--~IvlgGgv~~~-~~~~~~l~~~~~~~-------~i~~~~~~~~~~~GAa~la~~ 287 (299)
T 2e2o_A 230 QAVYLARKIGT--------N--KVYLKGGMFRS-NIYHKFFTLYLEKE-------GIISDLGKRSPEIGAVILAYK 287 (299)
T ss_dssp HHHHHHHHHTC--------S--EEEEESGGGGS-HHHHHHHHHHHHHT-------TCEEECCSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--------C--EEEEECCccCc-HHHHHHHHHHCCCC-------eEeccCCCCChHHHHHHHHHH
Confidence 99999999998 3 59999999998 99999999888764 222211348899999988753
No 28
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=99.88 E-value=2.5e-22 Score=204.44 Aligned_cols=299 Identities=15% Similarity=0.149 Sum_probs=186.0
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCC-ceeeeee
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQG-RQREIGF 169 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~-~~~~lG~ 169 (489)
++|+||+|||++|++++++.|+ ++.+. +.+ +......+.+++++.|++.|.+++++.+.. .. +...+|+
T Consensus 7 ~~lgiDiGgt~~~~~l~d~~g~---i~~~~--~~~-~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----~~~~i~gigi 76 (347)
T 2ch5_A 7 IYGGVEGGGTRSEVLLVSEDGK---ILAEA--DGL-STNHWLIGTDKCVERINEMVNRAKRKAGVD----PLVPLRSLGL 76 (347)
T ss_dssp EEEEEEECTTCEEEEEEETTSC---EEEEE--EEC-CCCHHHHCHHHHHHHHHHHHHHHHHHHTCC----TTCCBSEEEE
T ss_pred EEEEEEcCccceEEEEEeCCCC---EEEEE--eCC-CCCcccCCHHHHHHHHHHHHHHHHHhcCCC----cccceeEEEE
Confidence 6899999999999999999874 55432 121 222111257889999999999998876532 12 4678999
Q ss_pred EEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccCceEEEEEecCC
Q 011283 170 TFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDEDVMVAVILGTG 249 (489)
Q Consensus 170 tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG 249 (489)
++|+|++.. . +.++.+.|++.+...++|| .|.||+++++++ .| .++.+.+++|||
T Consensus 77 ~~pG~vd~~--------~-----------~~~l~~~l~~~~~~~~~pv---~v~NDa~aaa~a-~~--~~~~v~v~~GTG 131 (347)
T 2ch5_A 77 SLSGGDQED--------A-----------GRILIEELRDRFPYLSESY---LITTDAAGSIAT-AT--PDGGVVLISGTG 131 (347)
T ss_dssp EETTTTCHH--------H-----------HHHHHHHHHHHCTTSBSCE---EEEEHHHHHHHH-HC--SSCEEEEEESSS
T ss_pred eccCCCchH--------H-----------HHHHHHHHHHhcCCCCceE---EEECcHHHHHHh-hC--CCCcEEEEEcCC
Confidence 999998752 1 2477788877662112676 799999999999 44 367899999999
Q ss_pred cceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhh-hhchhhHHHHHHHHHHHH
Q 011283 250 TNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEK-TISGMYLGEIVRRVLLKM 328 (489)
Q Consensus 250 ~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek-~~SG~yLgei~R~~l~~~ 328 (489)
+|++++.. .|..+ .|++ .+|+|. ..||.|+++.........
T Consensus 132 ig~~~v~~-------------~G~~c-----------------------~cG~--~G~l~~de~s~~~i~~~~~~~~~~~ 173 (347)
T 2ch5_A 132 SNCRLINP-------------DGSES-----------------------GCGG--WGHMMGDEGSAYWIAHQAVKIVFDS 173 (347)
T ss_dssp EEEEEECT-------------TSCEE-----------------------EEEC--CCTTTCCTTSHHHHHHHHHHHHHHH
T ss_pred ceeEEEcC-------------CCCEE-----------------------ecCC--cCcccCCCccHHHHHHHHHHHHHHH
Confidence 99976542 12221 1333 357777 788888875444322111
Q ss_pred hhhccccCCCcccc---------ccccccccC--cccccccccC-chhHh-hhhhhhhhhcccccccccceeeeeehhhh
Q 011283 329 AEEGALFGNSVPEK---------LSMPFVLRT--PHICAMQQDY-SEDLQ-AVGSTLYDVAGVESSLKARKVVIEVCDTI 395 (489)
Q Consensus 329 ~~~~~lf~~~~~~~---------l~~~~~~~t--~~l~~i~~d~-~~~~~-~~~~il~~~~~~~~~~~d~~~~~~ia~~V 395 (489)
.. + ..+.. +...+.+++ ..+..+..+. ..+.. ....+++. ++..+..|+.+
T Consensus 174 ~d-g-----~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----------a~~gD~~a~~i 237 (347)
T 2ch5_A 174 ID-N-----LEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEG----------AQQGDPLSRYI 237 (347)
T ss_dssp HH-T-----SSCCSSCCHHHHHHHHHHHTCSSHHHHHTTTTTTCCHHHHHTTHHHHHHH----------HHTTCHHHHHH
T ss_pred Hh-C-----CCCCCCCccHHHHHHHHHhCCCCHHHHHHHHhcCCcHHHHHHHHHHHHHH----------HHcCCHHHHHH
Confidence 11 1 00100 000000000 0000000000 00110 12334433 23345899999
Q ss_pred hhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhC-cccccceEEEe--ccCCcc
Q 011283 396 VKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLG-TEISKNVVIEH--TKDGSG 472 (489)
Q Consensus 396 ~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~-~~~~~~v~i~~--a~Dgs~ 472 (489)
++++++++|.+++++++.++|.... ......|+++||+++..+.|.+.+++.+++... +.....+.++. ..+++.
T Consensus 238 l~~~~~~La~~i~~l~~~~~p~~~~--~~~~~~IvlgGgv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~a~~ 315 (347)
T 2ch5_A 238 FRKAGEMLGRHIVAVLPEIDPVLFQ--GKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSA 315 (347)
T ss_dssp HHHHHHHHHHHHHHHGGGSCGGGGC--STTCEEEEEESGGGGGHHHHHHHHHHHHHHHC---CCCSCSEEEEEEESSCTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc--cCCCceEEEECCcccCcHHHHHHHHHHHHhhccccccccCCceEEEecCCChH
Confidence 9999999999999999999983000 001136999999999999999999999987642 11122234433 356999
Q ss_pred hhHHHHhh
Q 011283 473 IGAALLAS 480 (489)
Q Consensus 473 iGAA~~aa 480 (489)
+|||.++.
T Consensus 316 ~GAa~la~ 323 (347)
T 2ch5_A 316 LGGASLGA 323 (347)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 29
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=99.87 E-value=1.6e-22 Score=209.03 Aligned_cols=289 Identities=10% Similarity=0.088 Sum_probs=196.7
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHH---HHhhhhHHHhhcCccccCCCceeee
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFI---ATGLAKFAEKEAGKFHLPQGRQREI 167 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~I---a~~i~~~~~~~~~~~~~~~~~~~~l 167 (489)
++|+||+|||++|++++++. +++.+. +++.+.... .+.+++++.+ .+.|.+++++.+... .+...+
T Consensus 3 ~vlgidiGgt~ik~al~d~~----~il~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~~~~~----~~i~gI 71 (381)
T 1saz_A 3 RILTINPGSTSTKLSIFEDE----RMVKMQ--NFSHSPDEL-GRFQKILDQLEFREKIARQFVEETGYSL----SSFSAF 71 (381)
T ss_dssp EEEEEEECSSEEEEEEEETT----EEEEEE--EEECCHHHH-HTCSSGGGGHHHHHHHHHHHHHTTTCCG----GGCSEE
T ss_pred eEEEEECCccceeEEEEecc----hheeee--ecccCcccc-cchhhHHHHHHHHHHHHHHHHHHcCCCc----cCceEE
Confidence 58999999999999999963 254432 233332100 0233455556 777888876554211 245677
Q ss_pred eeEEeeeccccccccceee----------------eeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeecccc----
Q 011283 168 GFTFSFPVKQTSIDSGVLI----------------KWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTV---- 227 (489)
Q Consensus 168 G~tfSfP~~q~~i~~g~li----------------~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtv---- 227 (489)
+++|+|++. .+|.+. .+.- + . +.++.+.|++.+ ++|| .|.||++
T Consensus 72 -i~~pG~vd~---~~G~~~~i~~~~~~~l~~~~~~~~~~--n---l-~~~l~~~l~~~~---~~Pv---~v~NDan~~~~ 135 (381)
T 1saz_A 72 -VSRGGLLDP---IPGGVYLVDGLMIKTLKSGKNGEHAS--N---L-GAIIAHRFSSET---GVPA---YVVDPVVVDEM 135 (381)
T ss_dssp -EEECCSCSC---BCSSEEECCHHHHHHHHHTTTCCCTT--H---H-HHHHHHHHHHHH---CCCE---EEESCTTBCCC
T ss_pred -EecCCCCCC---CCCceEecCHHHHHHHHhcccccChh--h---h-hHHHHHHHHHhc---CCCE---EEeCCCccccC
Confidence 899999875 345441 1211 1 1 457777788777 8997 7999999
Q ss_pred -----cccc-----------------cc-ccc----cCc--eEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeec
Q 011283 228 -----GTLA-----------------GA-RYW----DED--VMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINT 278 (489)
Q Consensus 228 -----atll-----------------a~-~~~----~~~--~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~ 278 (489)
++++ +| ++. +.+ +.+.+++|||+++|++.+++.+.+..+.++| |||.++.
T Consensus 136 ~~~a~aaalp~~~r~~gfhgls~~~~aE~~~~g~~~~~~~~~~v~~~lGtGiG~g~i~~G~~~~G~~g~agE-Gh~~~~~ 214 (381)
T 1saz_A 136 EDVARVSGHPNYQRKSIFHALNQKTVAKEVARMMNKRYEEMNLVVAHMGGGISIAAHRKGRVIDVNNALDGD-GPFTPER 214 (381)
T ss_dssp CGGGTBCSSTTCBCCCCSCHHHHHHHHHHHHHHTTCCGGGCEEEEEEESSSEEEEEEETTEEEEECCGGGTC-SSCCSSC
T ss_pred cHHHHHcCCcchhhhcccccccHHHHHHHHHHhcCCCCccCCEEEEEeCCCcEEEEEECCEEEEecCCCCCC-cceeecc
Confidence 9999 88 553 345 9999999999999999999998888887788 9998864
Q ss_pred ccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHHHhhhccccCCCccccccccccccCccccccc
Q 011283 279 EWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQ 358 (489)
Q Consensus 279 E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~ 358 (489)
. |. | .|++.-.+|+|.++|+..|-+.++. ...++ ..+.
T Consensus 215 ~-g~-c--------------~cg~l~~gc~e~~~S~~~l~~~~~~-------~~g~~------------~~~~------- 252 (381)
T 1saz_A 215 S-GT-L--------------PLTQLVDLCFSGKFTYEEMKKRIVG-------NGGLV------------AYLG------- 252 (381)
T ss_dssp C-CS-C--------------CHHHHHHHHTSSCCCTTGGGSTTTT-------SCTHH------------HHHS-------
T ss_pred C-CC-C--------------CCcHHHHHHHHhCCCHHHHHHHHHh-------ccCcc------------cccc-------
Confidence 3 43 2 2333114799999999998332210 00000 0000
Q ss_pred ccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchhhHHHHhh--hccCCcccccceeEEEecCccc
Q 011283 359 QDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGIVSILQKI--DEDSNGAIFGKRTVVAMDGGLY 436 (489)
Q Consensus 359 ~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~laaii~~~--~~~~~~~~~~~~~~I~i~Gsv~ 436 (489)
.. ...++++. ++..+..|+.+++++++++|.+|++++..+ +| ..|+++||+.
T Consensus 253 ---~~---~~~~i~~~----------a~~gd~~a~~~l~~~~~~la~~i~~l~~~l~~~p----------~~IvlgGgi~ 306 (381)
T 1saz_A 253 ---TS---DAREVVRR----------IKQGDEWAKRVYRAMAYQIAKWIGKMAAVLKGEV----------DFIVLTGGLA 306 (381)
T ss_dssp ---CC---CHHHHHHH----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------SEEEEEEGGG
T ss_pred ---CC---CHHHHHHH----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------CEEEEeCcCc
Confidence 00 11223332 222347899999999999999999999999 77 3699999999
Q ss_pred cchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhHHHHhhc
Q 011283 437 EHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGAALLASA 481 (489)
Q Consensus 437 ~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGAA~~aa~ 481 (489)
+..+.|.+.+++.++... .+.++.+ +|++.+|||.++.-
T Consensus 307 ~~~~~l~~~i~~~l~~~~------~~~i~~~~~~~~a~~~GAa~l~~~ 348 (381)
T 1saz_A 307 HEKEFLVPWITKRVSFIA------PVLVFPGSNEEKALALSALRVLRG 348 (381)
T ss_dssp GCTTTHHHHHHHHHTTTS------CEEEEEBCCHHHHHHHHHHHHHTT
T ss_pred cChHHHHHHHHHHHHhhc------CeEEEecCcchhHHHHHHHHHHcC
Confidence 998879999998887642 3566666 35789999988754
No 30
>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Probab=99.84 E-value=4.4e-22 Score=191.05 Aligned_cols=204 Identities=18% Similarity=0.187 Sum_probs=144.7
Q ss_pred cccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeee
Q 011283 89 RGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIG 168 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG 168 (489)
.+++|+||+|||++| +++..|+ +.. +.+.|.. .+.+++.+.|.+.++++ +...+|
T Consensus 5 ~~~~lgiDIGGT~i~--~~d~~g~---~~~----~~~t~~~---~~~~~~~~~i~~~i~~~-------------~i~gig 59 (226)
T 3lm2_A 5 DQTVLAIDIGGSHVK--IGLSTDG---EER----KVESGKT---MTGPEMVAAVTAMAKDM-------------TYDVIA 59 (226)
T ss_dssp GCCEEEEEECSSEEE--EEETTTC---CEE----EEECCTT---CCHHHHHHHHHHHTTTC-------------CCSEEE
T ss_pred CCEEEEEEECCCEEE--EEECCCC---EEE----EEECCCC---CCHHHHHHHHHHHHHhC-------------CCCEEE
Confidence 467999999999999 4666653 321 2343432 34677777776655432 246799
Q ss_pred eEEeeeccccccccceeeeeccceee-ecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccCceEEEEEec
Q 011283 169 FTFSFPVKQTSIDSGVLIKWTKGFSV-SGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDEDVMVAVILG 247 (489)
Q Consensus 169 ~tfSfP~~q~~i~~g~li~wtKgf~~-~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~~~iglIlG 247 (489)
+++|+|++.. +.+. + ..++ ++|.+.|+. +.+ ++|| .|.||+++++++|.+. .+.+.+++|
T Consensus 60 i~~pG~Vd~~----~~~~-~--~~nl~~~w~~~~l~----~~~---~~pv---~v~NDanaaalge~~~--~~~~~l~~G 120 (226)
T 3lm2_A 60 MGYPGPVVHN----KPLR-E--PVNLGEGWVGYDYE----GAF---GRPV---RIVNDALMQAIGSYNG--GRMLFLGLG 120 (226)
T ss_dssp EEESSCEETT----EECS-C--CTTSCSCCTTCCHH----HHH---TSCE---EEEEHHHHHHHHHCCS--SEEEEEEES
T ss_pred EEEEeEEECC----eEEE-E--CCcCCccccCCchH----Hhc---CCeE---EEEEHHHHHHHHHhhc--CcEEEEEeC
Confidence 9999999852 2222 1 1233 356677774 345 8897 7999999999999876 689999999
Q ss_pred CCcceeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcchhhhhhhhchhhHHHHHHHHHHH
Q 011283 248 TGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPGEQIYEKTISGMYLGEIVRRVLLK 327 (489)
Q Consensus 248 TG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg~~~~Ek~~SG~yLgei~R~~l~~ 327 (489)
||++++++.+++.++ +|.|||.++. .+|+|.|+|+.+| .|..
T Consensus 121 tGiG~gii~~G~l~~------GEiGH~~v~~--------------------------~gclE~~~s~~al---~~~~--- 162 (226)
T 3lm2_A 121 TGLGAAMIVENVAQP------MEIAHLPYRK--------------------------GKTYEHYVSEAYR---EKKG--- 162 (226)
T ss_dssp SSEEEEEEETTEEEE------ECCTTSEEET--------------------------TEEHHHHTCHHHH---HHHC---
T ss_pred CceEEEEEECCEEee------eeeeeEEecC--------------------------CCcHHHHhCHHHH---HHHH---
Confidence 999999999877543 3555555531 1699999999998 2210
Q ss_pred HhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCccccchh
Q 011283 328 MAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLAGAGI 407 (489)
Q Consensus 328 ~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa~l 407 (489)
+ +++++++|.+|
T Consensus 163 --------------------------------------------------------~------------~~~~~~L~~~l 174 (226)
T 3lm2_A 163 --------------------------------------------------------N------------AKWQKRVQDVV 174 (226)
T ss_dssp --------------------------------------------------------H------------HHHHHHHHHHH
T ss_pred --------------------------------------------------------H------------HHHHHHHHHHH
Confidence 0 12345799999
Q ss_pred hHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHH
Q 011283 408 VSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTE 452 (489)
Q Consensus 408 aaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~ 452 (489)
+++++.++| ..|++||++.+..+.|.+.+++.+++
T Consensus 175 a~l~~~~dP----------~~IVlGG~~~~~~~~~~~~i~~~~~~ 209 (226)
T 3lm2_A 175 ERLSAALEP----------DEVVIGGGNVERLENLPPKCRRGDNA 209 (226)
T ss_dssp HHHHHHHCC----------SEEEEESGGGGGCCCCCTTEEECCTT
T ss_pred HHHHHHHCC----------CEEEEeChhhhhhhHHHHHHHHHHHH
Confidence 999999998 36999999999998887776665543
No 31
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=99.80 E-value=1e-19 Score=182.22 Aligned_cols=278 Identities=18% Similarity=0.133 Sum_probs=165.5
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCce--eeee
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQ--REIG 168 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~--~~lG 168 (489)
++|+||+|||++|++++++.|+ ++.+. +.+ |.... .+.+++++.+.+.+.+++++.+.. ..+. ..+|
T Consensus 12 ~~lGiDiGgT~i~~~l~d~~G~---il~~~--~~~-~~~~~-~~~~~~~~~l~~~i~~~l~~~~~~----~~~i~~~~ig 80 (305)
T 1zc6_A 12 YLIGVDGGGTGTRIRLHASDGT---PLAMA--EGG-ASALS-QGIAKSWQAVLSTLEAAFQQAGLP----AAPASACAIG 80 (305)
T ss_dssp EEEEEEECSSCEEEEEEETTCC---EEEEE--EES-CCCGG-GCHHHHHHHHHHHHHHHHHHTTCC----CCCGGGEEEE
T ss_pred EEEEEEcCccceEEEEEcCCCC---EEEEE--eCC-CCCcc-cCHHHHHHHHHHHHHHHHHhcCCC----hhhhccceEE
Confidence 6899999999999999998774 55432 111 11111 347889999999999998765432 1233 5789
Q ss_pred eEEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcCcceEeeeeeccccccccccccccCceEEEEEecC
Q 011283 169 FTFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDEDVMVAVILGT 248 (489)
Q Consensus 169 ~tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGT 248 (489)
+++|+|++... |. + |++.+.+ ++|| .|.||++++++++. +.++.+.+++||
T Consensus 81 ig~pG~v~~~~--------~~-----------~----l~~~~~~-~~pv---~v~NDa~aaa~ge~--~~~~~v~v~~GT 131 (305)
T 1zc6_A 81 LGLSGVHNRQW--------AG-----------E----FESQAPG-FARL---SLATDGYTTLLGAH--GGQPGIIVALGT 131 (305)
T ss_dssp EEESCCCTTSH--------HH-----------H----HHHTCCC-CSEE---EEECHHHHHHHHHT--TTSSEEEEEESS
T ss_pred EEecCCCchHH--------HH-----------H----HHHhCCC-CceE---EEECCHHHHHHhhc--CCCCeEEEEecC
Confidence 99999987522 32 1 3332211 4666 79999999999973 346789999999
Q ss_pred CcceeEEe-eccccccccCCcCCCCCeeeecccccccCCCcc----cccccccccccCCcchhhhhhhhc--hhhHHHHH
Q 011283 249 GTNACYVE-QMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPL----TEFDRDMDAASINPGEQIYEKTIS--GMYLGEIV 321 (489)
Q Consensus 249 G~Na~yie-~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~----t~~D~~~D~~s~~pg~~~~Ek~~S--G~yLgei~ 321 (489)
|++++.+. +++. ..+++.|||.++...+..++.... ..+|-. .|..+..+|+|.+.+ +..| +
T Consensus 132 Gigg~~i~~~G~~-----~~aGe~Gh~~~d~g~~~~iG~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~l---~ 200 (305)
T 1zc6_A 132 GSIGEALYPDGSH-----REAGGWGYPSGDEASGAWLGQRAAQLTQMALDGR---HSHSPLTRAVLDFVGGDWQAM---M 200 (305)
T ss_dssp SEEEEEECTTSCE-----EEESCCCTTTSCTTSHHHHHHHHHHHHHHHHHTS---SCCCHHHHHHHHHHTSSHHHH---H
T ss_pred CeEEEEEeCCCcE-----EEecCcccccCCCchHHHHHHHHHHHHHHHHhCC---CCCChHHHHHHHHHCcCHHHH---H
Confidence 99755555 4432 223567777766322111111000 001110 111222456666664 3333 3
Q ss_pred HHHHHHHhhhccccCCCccccccccccccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCc
Q 011283 322 RRVLLKMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGR 401 (489)
Q Consensus 322 R~~l~~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~ 401 (489)
+.+. .. .+. .+. .....+++. + ..+++|+.+++++++
T Consensus 201 ~~~~----~~-------~~~-----------~~~----------~~~~~v~~~----------a-~GD~~A~~i~~~~~~ 237 (305)
T 1zc6_A 201 AWNG----RA-------TPA-----------QFA----------RLAPLVLSA----------A-RVDPEADALLRQAGE 237 (305)
T ss_dssp HHHH----TC-------CHH-----------HHH----------TTHHHHHHH----------T-TTCHHHHHHHHHHHH
T ss_pred HHHh----cc-------CHH-----------HHH----------HHHHHHHHH----------c-CCCHHHHHHHHHHHH
Confidence 2210 00 000 000 012234443 3 346999999999999
Q ss_pred cccchhhHHHHhhhccCCcccccceeEEEecCccccc-hhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhh
Q 011283 402 LAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEH-YTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLAS 480 (489)
Q Consensus 402 l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~-~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa 480 (489)
++|.+++++++. +| + .|+++||++.. .+.|.+.+++. +...++++.+|||++|.
T Consensus 238 ~L~~~l~~l~~~-~p--------~--~VvlgGgv~~~~~~~l~~~l~~~--------------i~~~~~~~~~GAa~la~ 292 (305)
T 1zc6_A 238 DAWAIARALDPQ-DE--------L--PVALCGGLGQALRDWLPPGFRQR--------------LVAPQGDSAQGALLLLQ 292 (305)
T ss_dssp HHHHHHHHHCTT-CC--------S--CEEEESHHHHHTGGGSCHHHHHH--------------CCCCSSCHHHHHHHHTC
T ss_pred HHHHHHHHHhcC-CC--------C--eEEEECCchHhHHHHHHHHHHhh--------------ccCCCCCHHHHHHHHHh
Confidence 999999999987 76 2 49999999874 45666666542 12246889999999875
Q ss_pred -ccccccC
Q 011283 481 -ANSKFDH 487 (489)
Q Consensus 481 -~~~~~~~ 487 (489)
...|+.|
T Consensus 293 ~~~~~~~~ 300 (305)
T 1zc6_A 293 RPSTRLEH 300 (305)
T ss_dssp --------
T ss_pred hhccchhh
Confidence 3444444
No 32
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=99.79 E-value=1.4e-19 Score=180.13 Aligned_cols=277 Identities=13% Similarity=0.057 Sum_probs=160.7
Q ss_pred EEEEecCCcceEEEEEEeCCccceeeecccccccccc-hhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeE
Q 011283 92 FYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQ-ELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFT 170 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~-~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~t 170 (489)
||+||+|||++|+++++ +|+ ++.+. ..|+ +....+.+++++.|.+.+.+.+... ..+...+|++
T Consensus 2 ~lgiDiGGT~~~~~l~d-~g~---il~~~----~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-------~~~i~~igig 66 (291)
T 1zbs_A 2 ILIGDSGSTKTDWCIAK-EGK---SLGRF----QTSGINPFQQDRNEIDTALRSEVLPAIGQK-------ASSIRAVYFY 66 (291)
T ss_dssp EEEEEECSSEEEEEEEE-TTE---EEEEE----EEECCCTTTSCHHHHHHHHTTTTHHHHTTS-------TTTCCEEEEE
T ss_pred EEEEEeCccceEEEEEe-CCe---EEEEE----ECCCCCcccCCHHHHHHHHHHHHHHHhCCC-------cccccEEEEE
Confidence 79999999999999999 774 55432 2222 2212246788888888887764211 1235678888
Q ss_pred EeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcC--cceEeeeeeccccccccccccccCceEEEEEecC
Q 011283 171 FSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQG--LDMRVSALVNDTVGTLAGARYWDEDVMVAVILGT 248 (489)
Q Consensus 171 fSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~--l~v~v~ai~NDtvatlla~~~~~~~~~iglIlGT 248 (489)
.|+++ . ..+ .++.+.|++.+ + .|| .|.||++++++++. +.++.+.+|+||
T Consensus 67 ~pG~~-~---~~~----------------~~l~~~l~~~~---~~~~pv---~v~NDa~~aa~ge~--g~~~~v~v~~GT 118 (291)
T 1zbs_A 67 GAGCT-P---AKA----------------PMLNEALDSML---PHCDRI---EVAGDMLGAARALC--GDSEGIACILGT 118 (291)
T ss_dssp ETTCC-T---TTH----------------HHHHHHHHHHS---TTCSEE---EEECHHHHHHHHHT--TTSCEEEEEESS
T ss_pred CCCCC-h---HHH----------------HHHHHHHHHhc---CCCCcE---EEeCcHHHHHHhhc--CCCCcEEEEecC
Confidence 88875 2 111 26777777766 5 365 89999999999984 668899999999
Q ss_pred Ccce-eEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcc-hhhhhhhhchhhHHHHHHHHHH
Q 011283 249 GTNA-CYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPG-EQIYEKTISGMYLGEIVRRVLL 326 (489)
Q Consensus 249 G~Na-~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg-~~~~Ek~~SG~yLgei~R~~l~ 326 (489)
|+++ +++.+++.. .+++.|||..+.. +.+ .+++.+ ..+++... +..|.+.++..+
T Consensus 119 Gigg~~i~~~G~~~-----~aGe~G~~~~d~g-~~~---------------~~G~~~~~~~~~~~~-~~~l~~~~~~~~- 175 (291)
T 1zbs_A 119 GSNSCLFDGREIKA-----NVSPLGYILGDEG-SGA---------------VLGRLFIGSLLKGQM-PEGLCEAFLQEY- 175 (291)
T ss_dssp SEEEEEECSSSEEE-----ECCCCHHHHCCTT-SHH---------------HHHHHHHHHHHTTCS-CTTHHHHHHHHT-
T ss_pred ChheEEECCCCcEE-----EeCCCccccCCCc-hHH---------------HHHHHHHHHHHHccC-CChHHHHHHHHh-
Confidence 9975 444564421 1234444444311 111 011100 01222222 444432222110
Q ss_pred HHhhhccccCCCccccccccccccCcccccccccCc--hhHh-hhhhhhhhhcccccccccceeeeeehhhhhhcCCccc
Q 011283 327 KMAEEGALFGNSVPEKLSMPFVLRTPHICAMQQDYS--EDLQ-AVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRLA 403 (489)
Q Consensus 327 ~~~~~~~lf~~~~~~~l~~~~~~~t~~l~~i~~d~~--~~~~-~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~ 403 (489)
+.. ++.+. ..+..+.. .+.. .+..+++ +..+++|+.|++++++++
T Consensus 176 ---------~~~-~~~l~----------~~~~~~~~~~~~ia~~a~~v~~------------~~GD~~A~~i~~~~~~~L 223 (291)
T 1zbs_A 176 ---------GLT-SADII----------ESVYRKPFPNRFLAGFSPFIAQ------------HLDIPAVYSLVQNSFDDF 223 (291)
T ss_dssp ---------TCC-HHHHH----------HHHHHSSCHHHHHHTTHHHHHT------------TTTSHHHHHHHHHHHHHH
T ss_pred ---------CcC-HHHHH----------HHHHcCCCCHHHHHHhhHHHHH------------hCCCHHHHHHHHHHHHHH
Confidence 000 00000 00000000 0000 0112222 224589999999999999
Q ss_pred cchhhHHHHhh-hccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhcc
Q 011283 404 GAGIVSILQKI-DEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASAN 482 (489)
Q Consensus 404 aa~laaii~~~-~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~ 482 (489)
|.++ .++.+ +| + .|+++||+++. |.+.+++.+++.. +++....+++++||+.+|...
T Consensus 224 a~~i--~~~~~~~p--------~--~vvlgGGv~~~---~~~~l~~~l~~~~-------~~i~~~~~a~~~GA~~la~~~ 281 (291)
T 1zbs_A 224 LVRN--VLRYNRPD--------L--PLHFIGSVAFH---YREVLSSVIKKRG-------LTLGSVLQSPMEGLIQYHHNN 281 (291)
T ss_dssp HHHH--TGGGCCTT--------S--CEEEESHHHHH---THHHHHHHHHHTT-------CCEEEEESCSHHHHHHHHHHC
T ss_pred HHHH--hcccCCCC--------c--eEEEECchHHh---hHHHHHHHHHHcC-------CeecccCcCHHHHHHHHHHhh
Confidence 9999 45555 66 2 49999999876 5677777776643 234456699999999999888
Q ss_pred ccccCC
Q 011283 483 SKFDHD 488 (489)
Q Consensus 483 ~~~~~~ 488 (489)
.++.|.
T Consensus 282 ~~~~~~ 287 (291)
T 1zbs_A 282 HVLEHH 287 (291)
T ss_dssp CC----
T ss_pred hhhccc
Confidence 887764
No 33
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=99.79 E-value=3.7e-20 Score=184.43 Aligned_cols=268 Identities=15% Similarity=0.100 Sum_probs=150.2
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccc-hhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeee
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQ-ELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGF 169 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~-~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~ 169 (489)
+||+||+|||++|+++++ +|+ ++.+. ..|+ +....+.+++++.|.+.+.+.+.. .+...+|+
T Consensus 1 ~~lgiDiGGT~i~~~l~d-~g~---il~~~----~~~~~~~~~~~~~~~~~~i~~~i~~~~~~---------~~i~~igi 63 (291)
T 1zxo_A 1 MILIADSGSTKTDWCVVL-NGA---VIKRL----GTKGINPFFQSEEEIQQKLTASLLPQLPE---------GKFNAVYF 63 (291)
T ss_dssp ---CEECCTTCEEEEEEC-SSS---EEEEE----EECCCCTTTSCSTTTTTTTTC----------------------CEE
T ss_pred CEEEEEeccccEEEEEEc-CCe---EEEEE----ECCCCCcccCCHHHHHHHHHHHHHHhcCc---------ccccEEEE
Confidence 378999999999999999 774 55432 2222 111123566777777777665422 22456788
Q ss_pred EEeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHHhcC--cceEeeeeeccccccccccccccCceEEEEEec
Q 011283 170 TFSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAMERQG--LDMRVSALVNDTVGTLAGARYWDEDVMVAVILG 247 (489)
Q Consensus 170 tfSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~~~~--l~v~v~ai~NDtvatlla~~~~~~~~~iglIlG 247 (489)
++|++. . .. +.++.+.|++.+ + +|| .|.||++++++++. +.++.+.+|+|
T Consensus 64 g~pG~~-~---~~----------------~~~l~~~l~~~~---~~~~pv---~v~NDa~~aalge~--g~~~~v~v~~G 115 (291)
T 1zxo_A 64 YGAGCT-P---EK----------------APVLRRAIADSL---PVIGNI---KANSDMLAAAHGLC--GQKAGIACILG 115 (291)
T ss_dssp ECTTCC-T---TT----------------THHHHHHHHHHS---CCCSCC---EEECSHHHHHHHTT--TTSCBEEEEES
T ss_pred EcCCCC-H---HH----------------HHHHHHHHHHhc---CCCceE---EEECcHHHHHHhhc--CCCCcEEEEeC
Confidence 888875 2 11 126777777766 5 476 79999999999995 66788999999
Q ss_pred CCcc-eeEEeeccccccccCCcCCCCCeeeecccccccCCCcccccccccccccCCcc-hhhhhhhhchhhHHHHHHHHH
Q 011283 248 TGTN-ACYVEQMDAIPKLQGNKSPSGRTIINTEWGAFSKGLPLTEFDRDMDAASINPG-EQIYEKTISGMYLGEIVRRVL 325 (489)
Q Consensus 248 TG~N-a~yie~~~~i~~~~g~~~~~g~miIn~E~G~f~~~lp~t~~D~~~D~~s~~pg-~~~~Ek~~SG~yLgei~R~~l 325 (489)
||++ ++++.+++.. .+++.|||+.+.. ..+ .+++.+ ..+++... +..|.+.++..+
T Consensus 116 TGi~g~gi~~~G~~~-----~aGe~Gh~~~d~g-~~~---------------~~G~~~~~~~~~~~~-~~~l~~~~~~~~ 173 (291)
T 1zxo_A 116 TGSNSCFYNGKEIVS-----NISPLGFILGDEG-SGA---------------VLGKLLVGDILKNQL-PATLKEEFLKQF 173 (291)
T ss_dssp SSEEEEEECSSSEEE-----ECCCCCTTTSCCS-SHH---------------HHHHHHHHHGGGTCS-CSHHHHHHHHHH
T ss_pred CChheEEECCCCcEE-----EeCCCccccCCCc-hHH---------------HHHHHHHHHHHHccC-CChHHHHHHHHh
Confidence 9995 7776665431 1234555544411 111 111110 01223222 556643333211
Q ss_pred HHHhhhccccCCCccccccc-ccc--ccCcccccccccCchhHhhhhhhhhhhcccccccccceeeeeehhhhhhcCCcc
Q 011283 326 LKMAEEGALFGNSVPEKLSM-PFV--LRTPHICAMQQDYSEDLQAVGSTLYDVAGVESSLKARKVVIEVCDTIVKRGGRL 402 (489)
Q Consensus 326 ~~~~~~~~lf~~~~~~~l~~-~~~--~~t~~l~~i~~d~~~~~~~~~~il~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l 402 (489)
.. . ++.+.. .|. .+...++. .+..+++ +..+++|+.|++++++.
T Consensus 174 ---~~-------~-~~~l~~~~~~~~~~~~~ia~----------~a~~v~~------------~~GD~~A~~i~~~~~~~ 220 (291)
T 1zxo_A 174 ---DL-------T-PPEIIDRVYRQPFPNRFLAS----------LSPFIAQ------------HLEEPAIRQLVMNSFIA 220 (291)
T ss_dssp ---TC-------C-HHHHGGGTTTSSCSTTTSST----------TTHHHHT------------TTTSTTTTHHHHHHHHH
T ss_pred ---CC-------C-HHHHHHHHhcCCCCHHHHHH----------hhHHHHH------------hCCCHHHHHHHHHHHHH
Confidence 00 0 000000 000 00000000 0111221 22348999999999999
Q ss_pred ccchhhHHHHhh-hccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhh
Q 011283 403 AGAGIVSILQKI-DEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLAS 480 (489)
Q Consensus 403 ~aa~laaii~~~-~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa 480 (489)
+|.++ . ++.+ +| + .|+++||+++. |.+.+++.+++ + .++++.+++++++|||.+|.
T Consensus 221 La~~i-~-~~~~~~p--------~--~vvlgGGv~~~---l~~~l~~~l~~---~----~~~i~~~~~a~~~GAa~la~ 277 (291)
T 1zxo_A 221 FFRRN-V-MQYDYKQ--------Y--PVHFIGSIAYC---YKEILQDAARQ---T----GIQIGKILQSPMEGLIQYHS 277 (291)
T ss_dssp HHTTT-G-GGSCTTT--------S--CEEECSHHHHH---THHHHHHHTTT---T----TCCEEEECSCTHHHHHTTSS
T ss_pred HHHHH-h-cccCCCC--------c--eEEEECcHHHH---HHHHHHHHHhc---C----CcEEeecCCCHHHHHHHHHH
Confidence 99999 3 4554 66 2 49999999886 77888777655 1 34666778999999998864
No 34
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=97.62 E-value=0.00018 Score=76.48 Aligned_cols=85 Identities=18% Similarity=0.146 Sum_probs=57.8
Q ss_pred CccccEEEEecCCcceEEEEEEeCCccceeeecccccccc--cc-hhhccChHHHHHHHHHhhhhHHHhhcCccccCCCc
Q 011283 87 NERGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--PQ-ELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGR 163 (489)
Q Consensus 87 ~E~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~ 163 (489)
....++|+||+|+|++|+++++.+|+ ++.+....++. |. .....+++++++.+.+++++++++.+... .+
T Consensus 4 ~~~~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~----~~ 76 (508)
T 3ifr_A 4 AQGRQVIGLDIGTTSTIAILVRLPDT---VVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGESD----WR 76 (508)
T ss_dssp ---CEEEEEEECSSEEEEEEEETTTE---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHCGGG----CC
T ss_pred ccCCEEEEEEecCcceEEEEECCCCC---EEEEEEEecceecCCCCceEECHHHHHHHHHHHHHHHHHhcCCCh----hh
Confidence 34568999999999999999998774 55543222221 11 11234688999999999999987655321 45
Q ss_pred eeeeeeEEee----ecccc
Q 011283 164 QREIGFTFSF----PVKQT 178 (489)
Q Consensus 164 ~~~lG~tfSf----P~~q~ 178 (489)
+..|||+... ++|..
T Consensus 77 I~~Igis~~~~~~v~~D~~ 95 (508)
T 3ifr_A 77 PGGICVTGMLPAVVLLDDR 95 (508)
T ss_dssp EEEEEEEECSSCBEEECTT
T ss_pred eEEEEEECCCCcEEEECCC
Confidence 6778888777 77753
No 35
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=97.41 E-value=0.00043 Score=73.84 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=55.5
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeeccccccc--ccc-hhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceee
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVS--IPQ-ELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQRE 166 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~--ip~-~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~ 166 (489)
.+|||||+|+|++|+++++.+|+ ++......++ .|. .....+++++++.+.+++++++++.+... .++..
T Consensus 26 ~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~----~~I~~ 98 (520)
T 4e1j_A 26 GYILAIDQGTTSTRAIVFDGNQK---IAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITA----NDIAA 98 (520)
T ss_dssp CEEEEEEECSSEEEEEEECTTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCG----GGEEE
T ss_pred CeEEEEEeCCcceEEEEECCCCC---EEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCc----ccEEE
Confidence 36899999999999999998775 5544322222 121 11234688999999999999987654321 35677
Q ss_pred eeeEEee----ecc
Q 011283 167 IGFTFSF----PVK 176 (489)
Q Consensus 167 lG~tfSf----P~~ 176 (489)
|||+... ++|
T Consensus 99 Igis~~g~~~v~~D 112 (520)
T 4e1j_A 99 IGITNQRETVVVWD 112 (520)
T ss_dssp EEEEECSSCEEEEE
T ss_pred EEEeCCcceEEEEE
Confidence 7777776 677
No 36
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=97.40 E-value=0.00031 Score=74.72 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=56.4
Q ss_pred ccccEEEEecCCcceEEEEEEeCCccceeeeccccccc--ccch-hhccChHHHHHHHHHhhhhHHHhhcCccccCCCce
Q 011283 88 ERGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVS--IPQE-LMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQ 164 (489)
Q Consensus 88 E~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~--ip~~-~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~ 164 (489)
|+.++|+||+|+|++|+++++.+|+ ++......++ .|.. ....+++++++.+.+++++++++.+... .++
T Consensus 1 ~~~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~----~~I 73 (510)
T 2p3r_A 1 EKKYIVALDQGTTSSRAVVMDHDAN---IISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISS----DQI 73 (510)
T ss_dssp CCCEEEEEEECSSEEEEEEECTTCC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCG----GGE
T ss_pred CCcEEEEEEcCCcceEEEEECCCCC---EEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCCh----hhe
Confidence 5668999999999999999998774 5544322222 1211 1234688999999999999988765321 345
Q ss_pred eeeeeEEee----eccc
Q 011283 165 REIGFTFSF----PVKQ 177 (489)
Q Consensus 165 ~~lG~tfSf----P~~q 177 (489)
..|||+... ++|.
T Consensus 74 ~~Igis~~~~~~v~~D~ 90 (510)
T 2p3r_A 74 AAIGITNQRETTIVWEK 90 (510)
T ss_dssp EEEEEEECSSCBEEEET
T ss_pred EEEEEeCCcCcEEEEEC
Confidence 666666653 5665
No 37
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.28 E-value=0.00072 Score=71.58 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=54.7
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccc--cc-hhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeee
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--PQ-ELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREI 167 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~l 167 (489)
+|||||+|||++|+++++.+|+ ++......++. |. .....+++++++.+.+++++++++.+... .++..|
T Consensus 3 ~~lgiDiGtT~~k~~l~d~~g~---i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~----~~i~~I 75 (495)
T 2dpn_A 3 FLLALDQGTTSSRAILFTLEGR---PVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAGAEA----GEVLAL 75 (495)
T ss_dssp CEEEEEECSSEEEEEEECTTSC---EEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCG----GGCCEE
T ss_pred EEEEEeeCCcceEEEEECCCCC---EEEEEEEeeceecCCCCcEeeCHHHHHHHHHHHHHHHHHhcCCCc----ccEEEE
Confidence 6899999999999999998774 55443222221 11 11123678999999999999987654321 346677
Q ss_pred eeEEe----eeccc
Q 011283 168 GFTFS----FPVKQ 177 (489)
Q Consensus 168 G~tfS----fP~~q 177 (489)
||+.. .++|.
T Consensus 76 gis~~~~~~~~vD~ 89 (495)
T 2dpn_A 76 GITNQRETTLLWDR 89 (495)
T ss_dssp EEEECSSCBEEEET
T ss_pred EEeCCCccEEEEEC
Confidence 77777 47775
No 38
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=97.24 E-value=0.00052 Score=66.87 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=21.9
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeec
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQAT 119 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~ 119 (489)
+||+||+|+|++|+++++.+|+ ++..
T Consensus 4 ~~lGiD~Gst~~k~~l~d~~g~---i~~~ 29 (270)
T 1hux_A 4 YTLGIDVGSTASKCIILKDGKE---IVAK 29 (270)
T ss_dssp EEEEEEECSSEEEEEEEETTTE---EEEE
T ss_pred EEEEEEeccceEEEEEEeCCCC---EEEE
Confidence 6899999999999999997663 6553
No 39
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=97.23 E-value=0.001 Score=70.63 Aligned_cols=80 Identities=8% Similarity=-0.066 Sum_probs=54.3
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccc--cch-hhccChHHHHHHHHHhhhhHHHhh--cCccccCCCcee
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--PQE-LMCGTSEELFDFIATGLAKFAEKE--AGKFHLPQGRQR 165 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p~~-~~~~~~~~lfd~Ia~~i~~~~~~~--~~~~~~~~~~~~ 165 (489)
+||+||+|||++|+++++.+|+ ++.+....++. |.. ....+++++++.+.+++.+++++. +.. ..++.
T Consensus 5 ~~lgIDiGtT~~k~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~----~~~i~ 77 (503)
T 2w40_A 5 VILSIDQSTQSTKVFFYDEELN---IVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYT----SVIIK 77 (503)
T ss_dssp EEEEEEECSSEEEEEEEETTCC---EEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSS----SCEEE
T ss_pred EEEEEEeCCcceEEEEECCCCC---EEEEEEEeeeeecCCCCcEEECHHHHHHHHHHHHHHHHHHhhcCCC----ccceE
Confidence 6899999999999999998774 55443222221 111 112368899999999999998764 321 13466
Q ss_pred eeeeEEe----eeccc
Q 011283 166 EIGFTFS----FPVKQ 177 (489)
Q Consensus 166 ~lG~tfS----fP~~q 177 (489)
.|||+.. .++|.
T Consensus 78 ~Igis~~~~~~~~~D~ 93 (503)
T 2w40_A 78 CIGITNQRETVIIWDR 93 (503)
T ss_dssp EEEEEECSSCEEEEET
T ss_pred EEEEcCCcceEEEEEC
Confidence 7777777 47775
No 40
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=97.23 E-value=0.00067 Score=71.96 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=54.5
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeecccccccc--cc-hhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceee
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--PQ-ELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQRE 166 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~ 166 (489)
.++||||+|+|++|+++++.+|+ ++.+....++. |. .....+++++++.+.+++++++++.+... .++..
T Consensus 6 ~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~----~~I~~ 78 (501)
T 3g25_A 6 KYILSIDQGTTSSRAILFNQKGE---IAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINENDVRA----DQIAG 78 (501)
T ss_dssp CEEEEEEECSSEEEEEEECTTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCG----GGEEE
T ss_pred cEEEEEEeCccceEEEEEcCCCC---EEEEEEeecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCc----ccEEE
Confidence 36899999999999999999775 55443222221 11 11234688999999999999988754321 34566
Q ss_pred eeeEEe----eeccc
Q 011283 167 IGFTFS----FPVKQ 177 (489)
Q Consensus 167 lG~tfS----fP~~q 177 (489)
|||+.. .++|.
T Consensus 79 Igis~~~~~~v~~D~ 93 (501)
T 3g25_A 79 IGITNQRETTVVWDK 93 (501)
T ss_dssp EEEEECSSCEEEEET
T ss_pred EEEECCcCcEEEEEC
Confidence 666654 46665
No 41
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=97.22 E-value=0.001 Score=70.41 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=54.3
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccc--cc-hhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeee
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--PQ-ELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREI 167 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~l 167 (489)
+|||||+|||++|+++++.+|+ ++.+....++. |. .....+++++++.+.+++.+++++.+... .++..|
T Consensus 4 ~~lgiDiGtt~~k~~l~d~~g~---~~~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~----~~i~~I 76 (497)
T 2zf5_O 4 FVLSLDEGTTSARAIIFDRESN---IHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEP----NQIAAI 76 (497)
T ss_dssp EEEEEEECSSEEEEEEECTTCC---EEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHTCCG----GGEEEE
T ss_pred EEEEEecCCchhEEEEECCCCC---EEEEEEeccceecCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCc----ccEEEE
Confidence 6899999999999999998764 55443222221 11 11123678999999999999987754321 345667
Q ss_pred eeEEee----ecccc
Q 011283 168 GFTFSF----PVKQT 178 (489)
Q Consensus 168 G~tfSf----P~~q~ 178 (489)
||+... ++|.+
T Consensus 77 gis~~~~~~v~~D~~ 91 (497)
T 2zf5_O 77 GVTNQRETTLVWDKD 91 (497)
T ss_dssp EEEECSSCEEEECTT
T ss_pred EEecCCCcEEEECCC
Confidence 777665 66653
No 42
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=97.20 E-value=0.00087 Score=71.21 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=54.2
Q ss_pred cccEEEEecCCcceEEEEEEeCCccceeeeccccccc--ccc-hhhccChHHHHHHHHHhhhhHHHhhcCccccCCCcee
Q 011283 89 RGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVS--IPQ-ELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQR 165 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~--ip~-~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~ 165 (489)
+.++||||+|+|++|+++++.+|+ ++......++ .|. .....+++++++.+.+++++++++.+... .++.
T Consensus 4 ~~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~----~~I~ 76 (506)
T 3h3n_X 4 KNYVMAIDQGTTSSRAIIFDRNGK---KIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRP----EAIA 76 (506)
T ss_dssp CCEEEEEEECSSEEEEEEEETTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCG----GGEE
T ss_pred CCEEEEEEcCCCceEEEEECCCCC---EEEEEEEecCccCCCCCcEEECHHHHHHHHHHHHHHHHHHcCCCh----hheE
Confidence 357999999999999999998775 5544322222 121 11234688999999999999988755321 3455
Q ss_pred eeeeEEe----eeccc
Q 011283 166 EIGFTFS----FPVKQ 177 (489)
Q Consensus 166 ~lG~tfS----fP~~q 177 (489)
.|||+.. .++|.
T Consensus 77 ~Igis~~~~~~v~~D~ 92 (506)
T 3h3n_X 77 GIGITNQRETTVVWDK 92 (506)
T ss_dssp EEEEEECSSCBEEEET
T ss_pred EEEeeCCcccEEEEeC
Confidence 5665543 25664
No 43
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=97.18 E-value=0.0012 Score=69.78 Aligned_cols=79 Identities=14% Similarity=0.343 Sum_probs=54.0
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccc--cch-hhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeee
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--PQE-LMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREI 167 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p~~-~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~l 167 (489)
.|||||+|||++|+++++.+|+ ++......+++ |.. ....+++++++.+.+++++++++.. ..++..|
T Consensus 1 ~~lgiDiGtt~~k~~l~d~~g~---~l~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~------~~~i~~I 71 (484)
T 2itm_A 1 MYIGIDLGTSGVKVILLNEQGE---VVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHS------LQDVKAL 71 (484)
T ss_dssp CEEEEEECSSEEEEEEECTTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSC------CTTCCEE
T ss_pred CEEEEEecCcccEEEEECCCCC---EEEEEEeccccccCCCCCEeECHHHHHHHHHHHHHHHHHhCC------ccceEEE
Confidence 3799999999999999998774 54443212221 111 1123678999999999999886532 1346778
Q ss_pred eeEEee----ecccc
Q 011283 168 GFTFSF----PVKQT 178 (489)
Q Consensus 168 G~tfSf----P~~q~ 178 (489)
||+... ++|..
T Consensus 72 gis~~~~~~v~~D~~ 86 (484)
T 2itm_A 72 GIAGQMHGATLLDAQ 86 (484)
T ss_dssp EEEECSSCBEEECTT
T ss_pred EEcCCcCcEEEECCC
Confidence 888877 77764
No 44
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=97.15 E-value=0.00058 Score=66.34 Aligned_cols=36 Identities=6% Similarity=0.057 Sum_probs=24.6
Q ss_pred eeeccccccccccccccCceEEEEEecCCcceeEEe
Q 011283 221 ALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVE 256 (489)
Q Consensus 221 ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie 256 (489)
..+|...|.+++..+..+.....+.+|.|..-+++.
T Consensus 75 ~~Vne~~aha~a~~~~~~~~~~vl~lgG~~~~~~~~ 110 (276)
T 4ehu_A 75 KQISELSCHARGVNFIIPETRTIIDIGGQDAKVLKL 110 (276)
T ss_dssp EECCHHHHHHHHHHHHSTTCCEEEEECSSCEEEEEE
T ss_pred cccchHHHHHHHHHHhCCCCCeEEEEcCCCceEEEE
Confidence 467888888888777666555666666666555544
No 45
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=97.13 E-value=0.00089 Score=71.05 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=55.0
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccc--cch-hhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeee
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--PQE-LMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREI 167 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p~~-~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~l 167 (489)
++||||+|+|++|+++++.+|+ ++.+....++. |.. ....+++++++.+.+++.+++++.+... .++..|
T Consensus 3 ~~lgiDiGtts~k~~l~d~~G~---i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~----~~i~~I 75 (504)
T 2d4w_A 3 YVLAIDQGTTSSRAIVFDHSGE---IYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRGNLTH----EDIAAV 75 (504)
T ss_dssp EEEEEEECSSEEEEEEECTTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCG----GGEEEE
T ss_pred EEEEEecCCcceEEEEECCCCC---EEEEEEEecceecCCCCceeECHHHHHHHHHHHHHHHHHHcCCCc----ccEEEE
Confidence 6899999999999999998774 55443222221 111 1123678999999999999987754321 346777
Q ss_pred eeEEee----eccc
Q 011283 168 GFTFSF----PVKQ 177 (489)
Q Consensus 168 G~tfSf----P~~q 177 (489)
||+... ++|.
T Consensus 76 gis~~g~~~v~vD~ 89 (504)
T 2d4w_A 76 GITNQRETAVVWDK 89 (504)
T ss_dssp EEEECSSCBEEEET
T ss_pred EEeCCCCeEEEEEC
Confidence 777775 7775
No 46
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=96.95 E-value=0.0017 Score=62.51 Aligned_cols=168 Identities=18% Similarity=0.248 Sum_probs=89.9
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeeeeeE
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREIGFT 170 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~lG~t 170 (489)
-+|+||+|+||+++++++ ++ ++.. .|+++++.. .+.+++..++.+.+.. .. .+...++++
T Consensus 4 M~L~IDIGNT~ik~gl~~-~~---~l~~----~~r~~T~~~-~t~de~~~~l~~l~~~--~~---------~~i~~i~Is 63 (249)
T 3bex_A 4 MYLLVDVGNTHSVFSITE-DG---KTFR----RWRLSTGVF-QTEDELFSHLHPLLGD--AM---------REIKGIGVA 63 (249)
T ss_dssp EEEEEEECSSEEEEEEES-SS---SSCE----EEEEECCTT-CCHHHHHHHHHHHHGG--GG---------GGEEEEEEE
T ss_pred eEEEEEECCCeEEEEEEE-CC---EEEE----EEEecCCCC-CCHHHHHHHHHHHHhh--cc---------ccCCEEEEE
Confidence 379999999999999997 23 2443 356665432 3567777777665543 11 122334444
Q ss_pred EeeeccccccccceeeeeccceeeecCCCchHHHHHHHHHH--------hc-CcceEeeeeec------ccccccccccc
Q 011283 171 FSFPVKQTSIDSGVLIKWTKGFSVSGTAGKDVVACLNEAME--------RQ-GLDMRVSALVN------DTVGTLAGARY 235 (489)
Q Consensus 171 fSfP~~q~~i~~g~li~wtKgf~~~~~~G~dv~~lL~~al~--------~~-~l~v~v~ai~N------Dtvatlla~~~ 235 (489)
...|-.... +.+.+++.+. +. |+++ ...| |-.+.+++...
T Consensus 64 SVvp~~~~~----------------------~~~~~~~~~~~~p~~v~~~~~gl~~---~y~~P~~lG~DR~~~~~aa~~ 118 (249)
T 3bex_A 64 SVVPTQNTV----------------------IERFSQKYFHISPIWVKAKNGCVKW---NVKNPSEVGADRVANVVAFVK 118 (249)
T ss_dssp ESCHHHHHH----------------------HHHHHHHHHSCCCEECCCCSSSSEE---CSSCGGGSCHHHHHHHHHHHH
T ss_pred cCcHHHHHH----------------------HHHHHHHhcCCCeEEEEccCCCcee---ccCChhhcCHHHHHHHHHHHH
Confidence 444321111 1111111110 01 2222 3444 66677777655
Q ss_pred ccCceEEEEEecCCcceeEEeeccccccccCCcCCCCCeeeeccccc----c---cCCCcccccccccccccCCcchhhh
Q 011283 236 WDEDVMVAVILGTGTNACYVEQMDAIPKLQGNKSPSGRTIINTEWGA----F---SKGLPLTEFDRDMDAASINPGEQIY 308 (489)
Q Consensus 236 ~~~~~~iglIlGTG~Na~yie~~~~i~~~~g~~~~~g~miIn~E~G~----f---~~~lp~t~~D~~~D~~s~~pg~~~~ 308 (489)
......+-+-+||.+.-.++.+++- . |-.|. +..+. . ...||.-+.+. .....|+..-
T Consensus 119 ~~~~~~iVvD~GTA~T~d~v~~g~~----l------GG~I~-PGi~l~~~aL~~~ta~Lp~v~~~~----~~~~~g~nT~ 183 (249)
T 3bex_A 119 EYGKNGIIIDMGTATTVDLVVNGSY----E------GGAIL-PGFFMMVHSLFRGTAKLPLVEVKP----ADFVVGKDTE 183 (249)
T ss_dssp HTCSCEEEEEESSEEEEEEEETTEE----E------EEEEE-ECHHHHHHHHHHTCSSCCCCCCCC----CCSSSBSSHH
T ss_pred HcCCCEEEEEcCCceEEEEEeCCeE----e------eEEEC-ccHHHHHHHHHHhhhcCCCCcccC----CCCCCCCCHH
Confidence 4456789999999999999943321 1 11221 11111 1 12455443322 2234567889
Q ss_pred hhhhchhhHH
Q 011283 309 EKTISGMYLG 318 (489)
Q Consensus 309 Ek~~SG~yLg 318 (489)
|.|-||.+.|
T Consensus 184 ~ai~sGi~~g 193 (249)
T 3bex_A 184 ENIRLGVVNG 193 (249)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999997664
No 47
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=96.92 E-value=0.0016 Score=69.53 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=52.7
Q ss_pred CccccEEEEecCCcceEEEEEEeCCccceeeecccccccc--cc-hhhccChHHHHHHHHHhhhhHHHhhcCccccCCCc
Q 011283 87 NERGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--PQ-ELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGR 163 (489)
Q Consensus 87 ~E~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~ 163 (489)
+|+.+|||||+|.|++|+++++.+|+ ++...++.++. |. .....+++++++.+.++|.+.+++.+... .+
T Consensus 1 tekkYvlgID~GTss~Ka~l~d~~G~---~va~~~~~~~~~~p~~G~~Eqdp~~~w~~~~~~i~~~l~~~~~~~----~~ 73 (526)
T 3ezw_A 1 TEKKYIVALDQGTTSSRAVVMDHDAN---IISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISS----DQ 73 (526)
T ss_dssp --CCEEEEEEECSSEEEEEEECTTCC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCG----GG
T ss_pred CCceEEEEEEccccceeeeEEcCCCC---EEEEEEEecCcccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCCh----hh
Confidence 47889999999999999999998775 54443223321 21 12234688999999999999998776432 34
Q ss_pred eeeeeeE
Q 011283 164 QREIGFT 170 (489)
Q Consensus 164 ~~~lG~t 170 (489)
+..|||+
T Consensus 74 I~aIgis 80 (526)
T 3ezw_A 74 IAAIGIT 80 (526)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 5556654
No 48
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=96.82 E-value=0.0018 Score=69.45 Aligned_cols=75 Identities=15% Similarity=0.316 Sum_probs=50.9
Q ss_pred cccEEEEecCCcceEEEEEEeCCccceeeecccccccc--c-chhhccChHHHHHHHHHhhhhHHHhhcCccccCCCcee
Q 011283 89 RGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--P-QELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQR 165 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~ 165 (489)
..++||||+|+|++|+++++.+|+ ++...+..+++ | ......+++++++.+.+++++++++.+... .++.
T Consensus 4 ~~~~lgIDiGtts~ka~l~d~~G~---il~~~~~~~~~~~p~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~----~~I~ 76 (554)
T 3l0q_A 4 ASYFIGVDVGTGSARAGVFDLQGR---MVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQADINP----IQVK 76 (554)
T ss_dssp CCEEEEEEECSSEEEEEEEETTSC---EEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCCG----GGEE
T ss_pred CcEEEEEEECcccEEEEEECCCCC---EEEEEEEecccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCH----hHEE
Confidence 347899999999999999998775 55443222221 1 111234688999999999999988765321 3455
Q ss_pred eeeeE
Q 011283 166 EIGFT 170 (489)
Q Consensus 166 ~lG~t 170 (489)
.|||+
T Consensus 77 ~Igis 81 (554)
T 3l0q_A 77 GLGFD 81 (554)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 66654
No 49
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=96.72 E-value=0.0058 Score=64.87 Aligned_cols=74 Identities=9% Similarity=0.058 Sum_probs=49.2
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeecccccccc--cc-hhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceee
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--PQ-ELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQRE 166 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~ 166 (489)
.++||||+|+|++|+++++.+|+ ++...+..+++ |. .....+++++++.+.+++++++ +.+... .++..
T Consensus 5 ~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~-~~~~~~----~~I~~ 76 (511)
T 3hz6_A 5 FYIATFDIGTTEVKAALADRDGG---LHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWW-QSGVDA----RRVSA 76 (511)
T ss_dssp CEEEEEEECSSEEEEEEECTTSC---EEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHH-TTTCCG----GGEEE
T ss_pred cEEEEEEeCCCceEEEEECCCCC---EEEEEEeecceecCCCCCEEECHHHHHHHHHHHHHHHH-hcCCCh----hHeEE
Confidence 37899999999999999998774 55443222221 11 1123468899999999999998 543221 34556
Q ss_pred eeeEE
Q 011283 167 IGFTF 171 (489)
Q Consensus 167 lG~tf 171 (489)
|||+.
T Consensus 77 Igis~ 81 (511)
T 3hz6_A 77 IVLSG 81 (511)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66654
No 50
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=96.64 E-value=0.0031 Score=66.90 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=43.7
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeecccccccc--c-chhhccChHHHHHHHHHhhhhHHHhh
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI--P-QELMCGTSEELFDFIATGLAKFAEKE 153 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~i~~~~~~~ 153 (489)
.+|||||+|+|++|+++++.+|+ ++...+..++. | ......+++++++.+.+++++++++.
T Consensus 4 ~~~lgIDiGtts~K~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~ 67 (504)
T 3ll3_A 4 KYIIGMDVGTTATKGVLYDINGK---AVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKI 67 (504)
T ss_dssp EEEEEEEECSSEEEEEEEETTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEecCCceEEEEEcCCCC---EEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999998774 55443222221 1 11123468899999999999998754
No 51
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=96.58 E-value=0.0027 Score=68.45 Aligned_cols=75 Identities=17% Similarity=0.262 Sum_probs=49.7
Q ss_pred ccEEEEecCCcceEEEEEEe-CCccceeeeccccccc-------cc-------chhhccChHHHHHHHHHhhhhHHHhhc
Q 011283 90 GLFYALDLGGTNFRVLRVQL-GGQEERVQATEFEQVS-------IP-------QELMCGTSEELFDFIATGLAKFAEKEA 154 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l-~g~~~~i~~~~~~~~~-------ip-------~~~~~~~~~~lfd~Ia~~i~~~~~~~~ 154 (489)
.+|||||+|+|++|+++++. +|+ ++.+....++ .| ......+++++++.+.++|.+++++.+
T Consensus 5 ~~~lgIDiGTts~Ka~l~d~~~G~---i~~~~~~~~~~~~~~~~~p~~~~~~~~g~~eqdp~~~~~~~~~~i~~~l~~~~ 81 (572)
T 3jvp_A 5 KYTIGVDYGTESGRAVLIDLSNGQ---ELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVEVLTTSVPAVMKESG 81 (572)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCC---EEEEEEEECTTCCBSSBSTTSCCBCCTTCCEECHHHHHHHHTTHHHHHHHC--
T ss_pred CEEEEEecCCcceEEEEEECCCCe---EEEEEEeccCCccccccCCccccCCCCCcEEECHHHHHHHHHHHHHHHHHHcC
Confidence 47999999999999999998 774 5544432333 12 112234678999999999999987754
Q ss_pred CccccCCCceeeeeeEE
Q 011283 155 GKFHLPQGRQREIGFTF 171 (489)
Q Consensus 155 ~~~~~~~~~~~~lG~tf 171 (489)
.. ..++..|||+.
T Consensus 82 ~~----~~~I~~Igis~ 94 (572)
T 3jvp_A 82 VD----ADDVIGIGVDF 94 (572)
T ss_dssp -C----CSCEEEEEEEE
T ss_pred CC----hhHEEEEEEec
Confidence 32 13455666655
No 52
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=96.46 E-value=0.0063 Score=64.12 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=50.7
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeeccccccc------ccch-hhccChHHHHHHHHHhhhhHHHhhcCccccCCC
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVS------IPQE-LMCGTSEELFDFIATGLAKFAEKEAGKFHLPQG 162 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~------ip~~-~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~ 162 (489)
..|||||+|+|++|+++++.+|+ ++......+. .|.. ....+.+++++.+.++++++.... .
T Consensus 4 ~~~lgiDiGtts~k~~l~d~~g~---~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~~~~~~~~~--------~ 72 (489)
T 2uyt_A 4 RNCVAVDLGASSGRVMLARYERE---CRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCAAG--------I 72 (489)
T ss_dssp EEEEEEEECSSEEEEEEEEEEGG---GTEEEEEEEEEEECCCEEETTEEECCHHHHHHHHHHHHHHHHHTT--------C
T ss_pred ceEEEEEecCCCceEEEEEecCc---cceEEEEEEeecCCCccccCCeEEECHHHHHHHHHHHHHHHHhCC--------C
Confidence 35899999999999999998764 2221111111 1211 112357788988888888875421 3
Q ss_pred ceeeeeeEE----eeecccc
Q 011283 163 RQREIGFTF----SFPVKQT 178 (489)
Q Consensus 163 ~~~~lG~tf----SfP~~q~ 178 (489)
++..|||+. ..++|..
T Consensus 73 ~i~~Igis~q~~~~v~~D~~ 92 (489)
T 2uyt_A 73 AIDSIGIDTWGVDFVLLDQQ 92 (489)
T ss_dssp CCCEEEEEECSSCEEEECTT
T ss_pred CceEEEEecCcccEEEECCC
Confidence 467888888 8888863
No 53
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=96.25 E-value=0.013 Score=56.89 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=33.5
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEA 154 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~ 154 (489)
.+|+||+|+||+++++++- + ++.. +|++|+. . .+.+++..+ +.++++..+
T Consensus 3 MlL~IDIGNT~iK~gl~d~-~---~l~~----~~r~~T~-~-~t~de~~~~----l~~ll~~~~ 52 (266)
T 3djc_A 3 LILCIDVGNSHIYGGVFDG-D---EIKL----RFRHTSK-V-STSDELGIF----LKSVLRENN 52 (266)
T ss_dssp CEEEEEECSSEEEEEEEET-T---EEEE----EEEEECS-C-CCHHHHHHH----HHHHHHTTT
T ss_pred eEEEEEECCCeEEEEEEEC-C---EEEE----EEEecCC-C-CCHHHHHHH----HHHHHHHcC
Confidence 4799999999999999974 3 3554 4677766 2 356665444 444554443
No 54
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=96.05 E-value=0.019 Score=60.92 Aligned_cols=74 Identities=9% Similarity=0.047 Sum_probs=49.0
Q ss_pred cccEEEEecCCcceEEEEEE-eCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhhcCccccCCCceeee
Q 011283 89 RGLFYALDLGGTNFRVLRVQ-LGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKEAGKFHLPQGRQREI 167 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~-l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~~~~~~l 167 (489)
..++|+||+|+|++|+++++ .+|+ ++.+.. .+.|... ..+++++++.+.+++++.- . ..++..|
T Consensus 4 ~~~~lgIDiGtts~ka~l~d~~~G~---i~~~~~--~~~~g~~-e~d~~~~~~~i~~~l~~~~----~-----~~~I~~I 68 (515)
T 3i8b_A 4 RTLVAGVDTSTQSCKVRVTDAETGE---LVRFGQ--AKHPNGT-SVDPSYWWSAFQEAAEQAG----G-----LDDVSAL 68 (515)
T ss_dssp SCEEEEEEECSSEEEEEEEETTTCC---EEEEEE--EECCSSS-EECTHHHHHHHHHHHHHTT----C-----STTEEEE
T ss_pred CcEEEEEEeccccEEEEEEECCCCe---EEEEEE--EeCCCCc-eECHHHHHHHHHHHHHhcC----C-----ccCceEE
Confidence 34789999999999999999 6774 555442 3444322 2467888988888776531 1 1345666
Q ss_pred eeEEee----eccc
Q 011283 168 GFTFSF----PVKQ 177 (489)
Q Consensus 168 G~tfSf----P~~q 177 (489)
||+.-. ++|.
T Consensus 69 gis~q~~~~v~~D~ 82 (515)
T 3i8b_A 69 AVGGQQHGMVILDN 82 (515)
T ss_dssp EEEECSSCBEEECT
T ss_pred EEeCCcceEEEECC
Confidence 666654 5565
No 55
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=95.96 E-value=0.0087 Score=63.08 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=39.8
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeecccccccc-cc-hhhccChHHHHHHHHHhhhhHH
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSI-PQ-ELMCGTSEELFDFIATGLAKFA 150 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~i-p~-~~~~~~~~~lfd~Ia~~i~~~~ 150 (489)
.+||+||+|+|++|+++++.+|+ ++...+..+++ |. .....+++++++.+.+++++++
T Consensus 6 ~~~lgIDiGTts~Ka~l~d~~G~---i~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~ 65 (482)
T 3h6e_A 6 GATIVIDLGKTLSKVSLWDLDGR---MLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYA 65 (482)
T ss_dssp --CEEEEECSSEEEEEEECTTSC---EEEEEEEECCCEESSSCEECCHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCeEEEEEECCCc---EEEEEEecCCcccCCCceeECHHHHHHHHHHHHHHHH
Confidence 36899999999999999997664 55443222221 11 1112468899999999999886
No 56
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=92.53 E-value=0.67 Score=44.73 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=30.6
Q ss_pred EEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhh
Q 011283 92 FYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGL 146 (489)
Q Consensus 92 ~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i 146 (489)
+|+||+|+||+++++++- + ++.. .|+++++.. .+.+++..++.+.+
T Consensus 2 lL~IDIGNT~ik~gl~~~-~---~l~~----~~r~~T~~~-~t~de~~~~l~~ll 47 (268)
T 2h3g_X 2 IFVLDVGNTNAVLGVFEE-G---ELRQ----HWRMETDRH-KTEDEYGMLVKQLL 47 (268)
T ss_dssp EEEEEECSSEEEEEEEET-T---EEEE----EEEEECCTT-CCHHHHHHHHHHHH
T ss_pred EEEEEECcCcEEEEEEEC-C---EEEE----EEEecCCCc-CCHHHHHHHHHHHH
Confidence 689999999999999972 2 3444 356665432 34666666654443
No 57
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=91.79 E-value=0.23 Score=52.82 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=23.4
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeecc
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQATE 120 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~ 120 (489)
.+||+||+|.|++|++++|.+|+ ++...
T Consensus 10 ~~~lgID~GTts~Ka~l~d~~G~---vv~~~ 37 (538)
T 4bc3_A 10 RCCLGWDFSTQQVKVVAVDAELN---VFYEE 37 (538)
T ss_dssp CEEEEEEECSSEEEEEEEETTCC---EEEEE
T ss_pred CEEEEEEEcCcCEEEEEECCCCC---EEEEE
Confidence 47999999999999999998774 55544
No 58
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=87.52 E-value=4.4 Score=40.26 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhcCcceEeeeeeccccccccccccc--c--CceEEEEEecCCcceeEEee
Q 011283 201 DVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW--D--EDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 201 dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~--~--~~~~iglIlGTG~Na~yie~ 257 (489)
+..+.+.+++++.|+++ ..|+|...|++.+.... . ....+-+=+|.|+--..+..
T Consensus 151 ~~v~~~~~~~~~aGl~~--~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~ 209 (377)
T 2ych_A 151 EAVAGVLEALRGAGLVP--VVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLR 209 (377)
T ss_dssp HHHHHHHHHHHHTTCEE--EEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCce--EEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEE
Confidence 44577778887778876 58999999988874321 1 23455566777765555443
No 59
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=87.47 E-value=2.4 Score=42.44 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhcCcceEeeeeeccccccccccccc-c--CceEEEEEecCCcceeEEe
Q 011283 201 DVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW-D--EDVMVAVILGTGTNACYVE 256 (489)
Q Consensus 201 dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~-~--~~~~iglIlGTG~Na~yie 256 (489)
.-.+.+.++.++.|+++ +.++|+..|++++.... . ....+-+=+|-|+--..+.
T Consensus 167 ~~r~~~~~a~~~aGl~~--~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv~ 223 (394)
T 3qfu_A 167 AQRQATKDAGTIAGLNV--LRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLL 223 (394)
T ss_dssp HHHHHHHHHHHHTTCEE--EEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCce--EEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEEE
Confidence 44567777777778865 58999999999875332 2 2333444466666543333
No 60
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=86.55 E-value=2.7 Score=42.44 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHhcCcceEeeeeecccccccccccccc-----CceEEEEEecCCcceeEEe
Q 011283 201 DVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD-----EDVMVAVILGTGTNACYVE 256 (489)
Q Consensus 201 dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~-----~~~~iglIlGTG~Na~yie 256 (489)
.-.+.++++.++.|+++ +.++|+..|++++..... ....+-+=+|-||--..+.
T Consensus 164 ~~r~~~~~a~~~AGl~~--~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~ 222 (409)
T 4gni_A 164 KQKAALIAAAAAADLEV--LQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVL 222 (409)
T ss_dssp HHHHHHHHHHHHTTCEE--EEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCe--EEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEE
Confidence 45677888887778865 689999999988755432 2334444467666544443
No 61
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=86.44 E-value=5.7 Score=37.36 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=18.9
Q ss_pred cccEEEEecCCcceEEEEEEeCC
Q 011283 89 RGLFYALDLGGTNFRVLRVQLGG 111 (489)
Q Consensus 89 ~G~~LaIDlGGTnlRv~lV~l~g 111 (489)
...|++||+|.|++|+.+++..+
T Consensus 27 ~~~~~gIDiGS~s~k~vi~~~~~ 49 (272)
T 3h1q_A 27 PPYKVGVDLGTADIVLVVTDQEG 49 (272)
T ss_dssp SCCEEEEECCSSEEEEEEECTTC
T ss_pred CCEEEEEEcccceEEEEEECCCC
Confidence 35789999999999999976443
No 62
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=86.32 E-value=2.7 Score=42.35 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhcCcceEeeeeeccccccccccccc------cCceEEEEEecCCcceeEEe
Q 011283 201 DVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW------DEDVMVAVILGTGTNACYVE 256 (489)
Q Consensus 201 dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~------~~~~~iglIlGTG~Na~yie 256 (489)
.-.+.++++.++.|+++ +.++|+..|++++.... .....+-+=+|-||--..+.
T Consensus 172 ~~r~~~~~a~~~AGl~~--~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~ 231 (404)
T 3i33_A 172 SQRQATKDAGTITGLNV--LRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSIL 231 (404)
T ss_dssp HHHHHHHHHHHHHTCEE--EEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCe--EEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEE
Confidence 44677778877678864 68999999999875442 22334444467666544444
No 63
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=78.02 E-value=8.1 Score=41.43 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHhcCcceEeeeeecccccccccccccc---CceEEEEEecCCcceeEEee
Q 011283 200 KDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD---EDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 200 ~dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~---~~~~iglIlGTG~Na~yie~ 257 (489)
..-.+.+.+|....|+++ +.++|+..|++++..... ...++-+=+|.||--.-+..
T Consensus 148 ~~qr~a~~~Aa~~AGl~v--~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~ 206 (605)
T 4b9q_A 148 DAQRQATKDAGRIAGLEV--KRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIE 206 (605)
T ss_dssp HHHHHHHHHHHHHTTCEE--EEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCce--EEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEE
Confidence 345677778877778875 589999999998754321 24455555787775554443
No 64
>4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis}
Probab=70.86 E-value=2.1 Score=43.45 Aligned_cols=55 Identities=13% Similarity=0.029 Sum_probs=40.8
Q ss_pred eeehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHH
Q 011283 389 IEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTE 452 (489)
Q Consensus 389 ~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~ 452 (489)
++-|+.+++-.++-++-.|.++...++. ...|+++||+.++.+.+++.+.+.+.-
T Consensus 296 d~~A~la~d~f~yriak~Iga~aa~LG~---------vDaIVfTGGIgEns~~vr~~I~~~l~~ 350 (398)
T 4ijn_A 296 DEHAKLAYDVYIHRLRKYIGAYMAVLGR---------TDVISFTAGVGENVPPVRRDALAGLGG 350 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSS---------CCEEEEEHHHHHHCHHHHHHHHTTCGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCC---------CcEEEECCccccccHHHHHHHHHHHhh
Confidence 3567777777777777777777777742 136999999999999899988877643
No 65
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=70.73 E-value=20 Score=37.40 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCcceEeeeeecccccccccccccc--CceEEEEEecCCcceeE
Q 011283 203 VACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD--EDVMVAVILGTGTNACY 254 (489)
Q Consensus 203 ~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~--~~~~iglIlGTG~Na~y 254 (489)
.+.+.++++..|+++ +.++|...|++++..... ....+-+=+|-|+--.-
T Consensus 125 r~a~~~a~~~AGl~~--~~li~Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvs 176 (509)
T 2v7y_A 125 RQATKDAGRIAGLEV--ERIINEPTAAALAYGLDKEEDQTILVYDLGGGTFDVS 176 (509)
T ss_dssp HHHHHHHHHHTTCEE--EEEEEHHHHHHHHTTGGGSCSEEEEEEEECSSCEEEE
T ss_pred HHHHHHHHHHcCCCe--EEEecCHHHHHHHHhhccCCCCEEEEEECCCCeEEEE
Confidence 456677776668765 689999999988754432 23444444566654333
No 66
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=69.23 E-value=19 Score=38.07 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCcceEeeeeecccccccccccccc----CceEEEEEecCCcceeEEe
Q 011283 202 VVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD----EDVMVAVILGTGTNACYVE 256 (489)
Q Consensus 202 v~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~----~~~~iglIlGTG~Na~yie 256 (489)
=.+.+.++.+..|+++ +.++|+..|++++..... ....+-+=+|.|+=-.-+.
T Consensus 154 qr~a~~~A~~~AGl~~--~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~ 210 (554)
T 1yuw_A 154 QRQATKDAGTIAGLNV--LRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSIL 210 (554)
T ss_dssp HHHHHHHHHHTTTCEE--EEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCe--EEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEE
Confidence 3566777777668765 689999999988744321 2344555566665444333
No 67
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=65.65 E-value=13 Score=36.87 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCcceEeeeeecccccccccccccc---CceEEEEEecCCcceeEEe
Q 011283 202 VVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD---EDVMVAVILGTGTNACYVE 256 (489)
Q Consensus 202 v~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~---~~~~iglIlGTG~Na~yie 256 (489)
=.+.+.+++++.|+++ +.++|...|++++..... ....+-+=+|-|+--..+.
T Consensus 150 ~r~~~~~a~~~aGl~~--~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~ 205 (383)
T 1dkg_D 150 QRQATKDAGRIAGLEV--KRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISII 205 (383)
T ss_dssp HHHHHHHHHHHTTCEE--SCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCce--EEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEE
Confidence 3566777777668764 589999999988644332 2334444456665444333
No 68
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=64.63 E-value=22 Score=38.08 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCcceEeeeeecccccccccccccc---CceEEEEEecCCcceeEEe
Q 011283 202 VVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD---EDVMVAVILGTGTNACYVE 256 (489)
Q Consensus 202 v~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~---~~~~iglIlGTG~Na~yie 256 (489)
=.+.+.+|.+..|+++ +.++|+..|++++..... ....+-+=+|-||=-.-+.
T Consensus 150 qr~a~~~A~~~AGl~v--~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~ 205 (605)
T 2kho_A 150 QRQATKDAGRIAGLEV--KRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISII 205 (605)
T ss_dssp HHHHHHHHHHTTTCEE--EEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCce--EEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEE
Confidence 3566777776668765 689999999998754322 2344445566666444443
No 69
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=63.55 E-value=34 Score=27.34 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=17.8
Q ss_pred cEEEEecCCcceEEEEEEeCC
Q 011283 91 LFYALDLGGTNFRVLRVQLGG 111 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g 111 (489)
++||||+|-..+=+|+-+..+
T Consensus 2 riLglD~G~kriGvAvsd~~~ 22 (98)
T 1iv0_A 2 RVGALDVGEARIGLAVGEEGV 22 (98)
T ss_dssp CEEEEEESSSEEEEEEECSCC
T ss_pred cEEEEEeCCCEEEEEEEeCCC
Confidence 489999999999999887644
No 70
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=62.13 E-value=25 Score=38.15 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhcCcceEeeeeecccccccccccc-c--------cCceEEEEEecCCcceeEEe
Q 011283 201 DVVACLNEAMERQGLDMRVSALVNDTVGTLAGARY-W--------DEDVMVAVILGTGTNACYVE 256 (489)
Q Consensus 201 dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~-~--------~~~~~iglIlGTG~Na~yie 256 (489)
.=.+.+.++....|+++ +.|+|+..|++++-.. . .....+-+=+|-|+=-.-+.
T Consensus 152 ~qR~a~~~Aa~~AGl~~--~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~ 214 (675)
T 3d2f_A 152 EQRYNIADAARIAGLNP--VRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIM 214 (675)
T ss_dssp HHHHHHHHHHHHTTCEE--EEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCce--EEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEE
Confidence 34566777776678875 6899999999987433 1 12334444566666444443
No 71
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=61.35 E-value=27 Score=35.45 Aligned_cols=54 Identities=17% Similarity=0.057 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHhcCcceEeeeeecccccccccccccc--CceEEEEEecCCcceeEEe
Q 011283 201 DVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD--EDVMVAVILGTGTNACYVE 256 (489)
Q Consensus 201 dv~~lL~~al~~~~l~v~v~ai~NDtvatlla~~~~~--~~~~iglIlGTG~Na~yie 256 (489)
+.++-+.+++++.|+++ ..++|...|++++....+ ....+-+=+|.|+-.-.+.
T Consensus 168 ~~v~n~~~~~~~AGL~v--~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~ 223 (419)
T 4a2a_A 168 KVYEMFYNFLQDTVKSP--FQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAY 223 (419)
T ss_dssp HHHHHHHHHHHTTSCSC--EEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEE
T ss_pred HHHHHHHHHHHHcCCcE--EEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEE
Confidence 46677888888788877 479999988876532211 1234444578777554444
No 72
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=60.25 E-value=17 Score=31.13 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=19.0
Q ss_pred ccEEEEecCCcceEEEEEEeCC
Q 011283 90 GLFYALDLGGTNFRVLRVQLGG 111 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g 111 (489)
+++||||+|-..+=+|+-+..+
T Consensus 3 ~~iLglD~G~kriGvAvsd~~~ 24 (138)
T 1nu0_A 3 GTLMAFDFGTKSIGVAVGQRIT 24 (138)
T ss_dssp CEEEEEECCSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCEEEEEEEcCCC
Confidence 5789999999999999988654
No 73
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=56.39 E-value=7.1 Score=41.04 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=31.3
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhccc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANS 483 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~ 483 (489)
.|.++||.. +.+.+.+.+...+ + ..|.+-...+++.+|||++|+++.
T Consensus 405 ~i~v~GGga-ks~~~~Qi~ADvl----g----~pV~~~~~~E~~alGAA~lA~~a~ 451 (526)
T 3ezw_A 405 ALRVDGGAV-ANNFLMQFQSDIL----G----TRVERPEVREVTALGAAYLAGLAV 451 (526)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----T----SEEEEESCCCHHHHHHHHHHHHHT
T ss_pred EEEEECchh-hCHHHHHHHHHHH----C----CEEEeCCCCchHHHHHHHHHHHHh
Confidence 466666665 5677776655433 2 245544557899999999998754
No 74
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=52.17 E-value=8.7 Score=40.85 Aligned_cols=76 Identities=14% Similarity=0.268 Sum_probs=45.5
Q ss_pred ehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCC
Q 011283 391 VCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDG 470 (489)
Q Consensus 391 ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dg 470 (489)
++++|++ -+|..+.-++..+..... +...|.+.||..++.+.+.+.+...+ + ..|.+....++
T Consensus 414 l~RAvlE----gia~~~r~~~~~l~~~g~-----~~~~i~~~GGga~ks~~~~Qi~ADv~----g----~pV~~~~~~e~ 476 (572)
T 3jvp_A 414 IYRALLE----ATAFGTRAIVDAFHGRGV-----EVHELYACGGLPQKNHLLMQIFADVT----N----REIKVAASKQT 476 (572)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHTTTC-----CEEEEEEESSHHHHCHHHHHHHHHHH----T----SCEEEBCCSSH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHcCC-----CcCEEEEEcCchhhCHHHHHHHHHHH----C----CeeEecCCCcc
Confidence 4555555 244444555555543111 12347777777757777777665543 2 24544445789
Q ss_pred cchhHHHHhhccc
Q 011283 471 SGIGAALLASANS 483 (489)
Q Consensus 471 s~iGAA~~aa~~~ 483 (489)
+.+|||++|+++.
T Consensus 477 ~alGaA~lA~~a~ 489 (572)
T 3jvp_A 477 PALGAAMFASVAA 489 (572)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998754
No 75
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=52.05 E-value=13 Score=38.77 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=32.0
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhcccc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANSK 484 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~~ 484 (489)
.|.+.||.. +.+.+.+.+...+ + ..|.+....+++.+|||++|+.+.-
T Consensus 403 ~i~~~GGga-~s~~~~Qi~ADv~----g----~pV~~~~~~e~~alGaA~lA~~a~G 450 (508)
T 3ifr_A 403 RFFASDGGT-RSRVWMGIMADVL----Q----RPVQLLANPLGSAVGAAWVAAIGGG 450 (508)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----T----SCEEEEECCSTHHHHHHHHHHHHTC
T ss_pred EEEEeCCcc-cCHHHHHHHHHHh----C----CeEEecCCCCchHHHHHHHHHHHhC
Confidence 366666665 5777776665433 2 2455555678999999999987543
No 76
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=50.88 E-value=7.7 Score=37.61 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=28.6
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCC---cchhHHHH
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDG---SGIGAALL 478 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dg---s~iGAA~~ 478 (489)
.|++.||....+|.+++.+.++++.. ..++...+++ +.+|||+.
T Consensus 239 ~Vvf~Gg~l~~n~~l~~~l~~~~~~~-------~~~~~~p~~~~~~gAlGAaL~ 285 (287)
T 2ews_A 239 NIVYIGSSFHNNALLRKVVEDYTVLR-------GCKPYYVENGAFSGAIGALYL 285 (287)
T ss_dssp EEEEESGGGTTCHHHHHHHHHHHHHT-------TCEEEECTTGGGHHHHHHHHT
T ss_pred eEEEeCCchhcCHHHHHHHHHHHhhC-------CceEEECCCccHHHHHHHHHh
Confidence 49999997778998888888765441 2334444444 45566554
No 77
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=50.88 E-value=9.9 Score=39.64 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=31.8
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhcccc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANSK 484 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~~ 484 (489)
.|.+.||.. +.+.+.+.+...+ + ..|.+....+++.+|||++|+.+.-
T Consensus 407 ~i~~~GG~a-ks~~~~Qi~Adv~----g----~pV~~~~~~e~~alGaA~la~~a~G 454 (501)
T 3g25_A 407 SLRVDGGAV-KNNFIMQFQADIV----N----TSVERPEIQETTALGAAFLAGLAVG 454 (501)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----T----SEEEEESCCCHHHHHHHHHHHHHTT
T ss_pred EEEEecchh-cCHHHHHHHHHHh----C----CceEecCCCcchHHHHHHHHHHHhC
Confidence 366666655 6777777665533 2 2454444578999999999987543
No 78
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=50.22 E-value=14 Score=38.64 Aligned_cols=47 Identities=23% Similarity=0.168 Sum_probs=31.7
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhccc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANS 483 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~ 483 (489)
.|.+.||.. +.+.+.+.+...+ + ..|.+....+++.+|||++|+++.
T Consensus 427 ~i~~~GGga-ks~~~~Qi~ADvl----g----~pV~~~~~~e~~alGAA~lA~~a~ 473 (515)
T 3i8b_A 427 RILLIGGGA-KSEAIRTLAPSIL----G----MDVTRPATDEYVAIGAARQAAWVL 473 (515)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----T----SCEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEEECchh-cCHHHHHHHHHHh----C----CceEecCCcccHHHHHHHHHHHHc
Confidence 466666765 6777777665543 2 245554557899999999998653
No 79
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=50.12 E-value=14 Score=32.02 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=19.3
Q ss_pred cEEEEecCCcceEEEEEEeCCc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQ 112 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~ 112 (489)
++||||.|=.++-+++++..|.
T Consensus 4 riLGiDpG~~riGvAv~d~~g~ 25 (150)
T 1vhx_A 4 RILGLDLGTKTLGVALSDEMGW 25 (150)
T ss_dssp EEEEEEECSSEEEEEEECTTSS
T ss_pred EEEEEEccCCEEEEEEEECCCC
Confidence 5899999999999999997653
No 80
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=48.81 E-value=9.8 Score=39.61 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=39.9
Q ss_pred ccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhcc
Q 011283 403 AGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASAN 482 (489)
Q Consensus 403 ~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~ 482 (489)
+|..+.-++..+... ..|.++||.. +.+.+.+.+... .++ ..|.+....+++.+|||++|+.+
T Consensus 374 ia~~~r~~l~~~~~~---------~~i~~~GG~a-~s~~w~Qi~ADv---~~g----~pV~~~~~~e~~alGAA~lA~~a 436 (482)
T 3h6e_A 374 AALVADTALDLIGST---------GRILVEGRFA-EADVFVRALASL---RPD----CAVYTANAHNDVSFGALRLIDPG 436 (482)
T ss_dssp HHHHHHHHHHHTTCC---------SEEEEESGGG-GCHHHHHHHHHH---STT----SEEEEESSCCCTTGGGHHHHCTT
T ss_pred HHHHHHHHHHHhcCC---------CeEEEeCCcc-cCHHHHHHHhhh---cCC----CeEEEcCCCchHHHHHHHHhCcc
Confidence 455555566666541 1366667765 577777766543 022 24555556789999999999976
No 81
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=47.39 E-value=14 Score=38.45 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=29.6
Q ss_pred Ccc--eEeeeeeccccccccccccccCceEEEEEecCCcceeEEe
Q 011283 214 GLD--MRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVE 256 (489)
Q Consensus 214 ~l~--v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie 256 (489)
|++ +.|++-.-|+.+++++.--.. ...+.+++||+.--..+.
T Consensus 226 Gl~~g~pV~~g~~D~~aa~~g~g~~~-~g~~~~s~GTs~~~~~~~ 269 (504)
T 3ll3_A 226 GIDSDTKIILGASDGYLSTIGVNAID-SDHCALNVGTSGAIRTIV 269 (504)
T ss_dssp TCCTTCEEEEEEEHHHHHHHTTTCCS-TTEEEEEESSSEEEEEEE
T ss_pred CCCcCCCEEEEccHHHHHHHhCCCCC-CCcEEEEechhhhheeeC
Confidence 664 567888899999999864433 356789999985444433
No 82
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=46.91 E-value=31 Score=30.12 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.4
Q ss_pred cEEEEecCCcceEEEEEEeCCc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQ 112 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~ 112 (489)
++||||-|=|+.=.++++..|+
T Consensus 2 ~ILGIDPGl~~tG~gvi~~~g~ 23 (158)
T 1hjr_A 2 IILGIDPGSRVTGYGVIRQVGR 23 (158)
T ss_dssp EEEEEECCSSEEEEEEEEEETT
T ss_pred EEEEEccCCCCeeEEEEEecCC
Confidence 4799999999999999997665
No 83
>3nuw_A 2-OXO-3-deoxygalactonate kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.09A {Klebsiella pneumoniae} PDB: 3r1x_A*
Probab=46.52 E-value=20 Score=34.82 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=21.2
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATE 120 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~ 120 (489)
.+|+||=|-||+|+-+++ +| +++.+.
T Consensus 7 ~~IavDWGTs~lRa~l~~-~g---~vl~~~ 32 (295)
T 3nuw_A 7 RYIAIDWGSTNLRAWLYQ-GE---ECLESR 32 (295)
T ss_dssp EEEEEEECSSCEEEEEEE-TT---EEEEEE
T ss_pred cEEEEEecchheeeeeec-CC---ceehhh
Confidence 589999999999999998 55 466543
No 84
>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.55A {Sinorhizobium meliloti}
Probab=46.32 E-value=16 Score=36.14 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=21.7
Q ss_pred ccEEEEecCCcceEEEEEEeCCccceeeec
Q 011283 90 GLFYALDLGGTNFRVLRVQLGGQEERVQAT 119 (489)
Q Consensus 90 G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~ 119 (489)
..+|+||=|-||+|+-+++.+|+ ++.+
T Consensus 7 ~~~IavDWGTSnlRa~l~~~~g~---vl~~ 33 (330)
T 3t69_A 7 GYYAAVDWGTSSFRLWIIGEDGA---VLAE 33 (330)
T ss_dssp -CEEEEEECSSCEEEEEECTTSC---EEEE
T ss_pred CCEEEEEecchheehheecCCCC---chhh
Confidence 35899999999999999987653 6654
No 85
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=43.07 E-value=11 Score=39.42 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=30.7
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhccc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANS 483 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~ 483 (489)
.|.+.||.. +.+.+.+.+...+ + ..|.+....+++.+|||++|+.+.
T Consensus 404 ~i~~~GGga-~s~~~~Qi~ADv~----g----~pV~~~~~~e~~alGaA~lA~~a~ 450 (510)
T 2p3r_A 404 ALRVDGGAV-ANNFLMQFQSDIL----G----TRVERPEVREVTALGAAYLAGLAV 450 (510)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----T----SEEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEeCchh-cCHHHHHHHHHHh----C----CceEecCCCCcHHHHHHHHHHHHh
Confidence 366666655 6777777655433 2 245444456899999999998643
No 86
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=42.39 E-value=42 Score=32.92 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=33.9
Q ss_pred ccccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhh
Q 011283 88 ERGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAK 148 (489)
Q Consensus 88 E~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~ 148 (489)
+.+.++.+|+||.++=++++.+.++ .++... ...++ -.++++.++|++.++.
T Consensus 188 ~~~~vlVvDIGgGTtDv~vi~~~~g--~~v~~~--s~~~~-----lGg~~i~~~I~~~i~~ 239 (346)
T 2fsj_A 188 QPGYGVVIDVGSRTTDVLTINLMDM--EPVVEL--SFSLQ-----IGVGDAISALSRKIAK 239 (346)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTTT--EECGGG--CEEES-----CCHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCcEEEEEEEecCC--EEEeec--CCCcc-----hhHHHHHHHHHHHHHH
Confidence 4477899999999999999998553 122211 11222 2367788888776543
No 87
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=41.56 E-value=16 Score=38.01 Aligned_cols=47 Identities=21% Similarity=0.370 Sum_probs=31.0
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhccc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANS 483 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~ 483 (489)
.|.+.||.. +.+.+.+.+...+ + ..|.+....+++.+|||++|+.+.
T Consensus 406 ~i~~~GG~a-~s~~~~Qi~Adv~----g----~pV~~~~~~e~~alGaA~lA~~~~ 452 (504)
T 2d4w_A 406 ELRVDGGMV-ANELLMQFQADQL----G----VDVVRPKVAETTALGAAYAAGIAV 452 (504)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----T----SCEEEESCSCHHHHHHHHHHHHHH
T ss_pred eEEEeCCcc-cCHHHHHHHHHHh----C----CeEEeCCCCcchHHHHHHHHHhhc
Confidence 366677766 5677776655533 2 245444456789999999998754
No 88
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=41.52 E-value=12 Score=32.56 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=38.7
Q ss_pred cCCCchHHHHHHHHHHhcCcceE-eeeeecc------ccccccccccccCceEEEEEecCCcceeEEee
Q 011283 196 GTAGKDVVACLNEAMERQGLDMR-VSALVND------TVGTLAGARYWDEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 196 ~~~G~dv~~lL~~al~~~~l~v~-v~ai~ND------tvatlla~~~~~~~~~iglIlGTG~Na~yie~ 257 (489)
+-.|.++++.|.+.|+++|..|. +-.-..| -.+..++++.. ....-=+|+|||+|.++.-|
T Consensus 15 DhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~-~~d~GIliCGTGiG~siaAN 82 (148)
T 4em8_A 15 DHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVS-DTSFGVLICGTGIGMSIAAN 82 (148)
T ss_dssp CGGGHHHHHHHHHHHHHTTCEEEECCCCTTCSCCCGGGGTHHHHTTCB-TTBEEEEEESSSHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHH-HhCeEEEEccCcHHHHHHHh
Confidence 34578999999999998887752 2111223 12222333334 44555679999999998765
No 89
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=41.35 E-value=10 Score=39.57 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=30.6
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhccc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANS 483 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~ 483 (489)
.|.+.||.. +.+.+.+.+...+ + ..|.+....+++.+|||++|+.+.
T Consensus 406 ~i~~~GGga-~s~~~~Qi~ADv~----g----~pV~~~~~~e~~alGaA~lA~~a~ 452 (506)
T 3h3n_X 406 LLKVDGGAA-KNDLLMQFQADIL----D----IDVQRAANLETTALGAAYLAGLAV 452 (506)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----T----SEEEECSSSCHHHHHHHHHHHHHT
T ss_pred EEEEecccc-cCHHHHHHHHHHh----C----CeEEecCCCcchhHHHHHHHHHHh
Confidence 366666655 5777776665533 2 234444456899999999998654
No 90
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=40.84 E-value=23 Score=37.31 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=31.6
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhcccc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANSK 484 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~~ 484 (489)
.|.+.||.. +.+.+.+.+...+ + ..|.+....+++.+|||++|+++.-
T Consensus 445 ~i~~~GG~a-ks~~~~Qi~ADv~----g----~pV~~~~~~e~~alGAA~lA~~a~G 492 (554)
T 3l0q_A 445 TMMASGGGT-KNPIFVQEHANAT----G----CAMLLPEESEAMLLGSAMMGTVAAG 492 (554)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----C----CEEEEESCSCHHHHHHHHHHHHHTT
T ss_pred EEEEeCccc-cCHHHHHHHHHhh----C----CeEEecCCCcchHHHHHHHHHHHcC
Confidence 366667765 5777777655433 2 2455544578999999999987543
No 91
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=40.45 E-value=23 Score=36.62 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=24.4
Q ss_pred Cc-ceEeeeeeccccccccccccccCceEEEEEecCC
Q 011283 214 GL-DMRVSALVNDTVGTLAGARYWDEDVMVAVILGTG 249 (489)
Q Consensus 214 ~l-~v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG 249 (489)
|+ .+.|++..-|+.+++++..-..+ ..+.+++||.
T Consensus 221 Gl~g~pV~~g~~D~~aa~~g~g~~~~-g~~~~s~GTs 256 (484)
T 2itm_A 221 GMATVPVVAGGGDNAAGAVGVGMVDA-NQAMLSLGTS 256 (484)
T ss_dssp TSCCCEEECCEEHHHHHHHHHTCCST-TCEEEEESSS
T ss_pred CCCCCeEEEEchHHHHHHHhCCCCCC-CcEEEEccch
Confidence 55 35567888999999998544333 3467888884
No 92
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=39.95 E-value=53 Score=31.88 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=38.3
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhc-c-ChHHHHHHHHHhhhhHHHh
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMC-G-TSEELFDFIATGLAKFAEK 152 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~-~-~~~~lfd~Ia~~i~~~~~~ 152 (489)
+|-+||+|-.++|..+++..+...+++.......++-+.+.. + =.++-.+...+++..|...
T Consensus 5 ~~A~IDiGSNsirL~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~~L~~f~~~ 68 (315)
T 3mdq_A 5 RIGVIDMGTNTFHLLITDIVNDRPHTLVNEKSAVGLGKGGITKGFITEEAMDRALDTLKKFRVI 68 (315)
T ss_dssp EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCSSTTTGGGTCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCcEEEEEEEEcCCceEEeeeceeeeeccccccccCCcCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999865433444433222333333211 1 1345677788888888653
No 93
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=39.77 E-value=33 Score=36.89 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=27.3
Q ss_pred eeeccccccccccccccCceEEEEEecCCcceeEEeecc
Q 011283 221 ALVNDTVGTLAGARYWDEDVMVAVILGTGTNACYVEQMD 259 (489)
Q Consensus 221 ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~yie~~~ 259 (489)
.|==|++|.+++..... ...+.|.+-=|||+=++...+
T Consensus 352 ~VGaDi~Ag~la~~~~~-~~~~~L~iDiGTNgEivL~~~ 389 (631)
T 3zyy_X 352 YVGGDITSGVLYTGLAN-SDEITLFIDIGTNGEMVLGNK 389 (631)
T ss_dssp TBCHHHHHHHHHHTTTS-CSSCEEEEECSSEEEEEEECS
T ss_pred cccHHHHHHHHhcCccc-CCCCEEEEEcCCCeEEEEeeC
Confidence 45678888888875432 223578888899999988654
No 94
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=39.49 E-value=21 Score=37.06 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=42.1
Q ss_pred ehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCC
Q 011283 391 VCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDG 470 (489)
Q Consensus 391 ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dg 470 (489)
++++|++- +|..+..++..+..... .+ .|.+.||.. +.+.+.+.+...+ + ..|.+....++
T Consensus 369 l~rAvlEg----ia~~~~~~l~~l~~~~~----~~--~i~~~GG~a-~s~~~~Qi~Adv~----g----~pV~~~~~~e~ 429 (497)
T 2zf5_O 369 LARATLEA----IAYLTRDVVDEMEKLVQ----IK--ELRVDGGAT-ANDFLMQFQADIL----N----RKVIRPVVKET 429 (497)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHTTTSC----CC--CEEEESGGG-GCHHHHHHHHHHH----T----SCEEEESCSCH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHhcCC----cc--eEEEeCccc-cCHHHHHHHHhhc----C----CeEEEcCCCcc
Confidence 45555552 34445555555543110 02 255666666 5667776665543 2 23544444678
Q ss_pred cchhHHHHhhccc
Q 011283 471 SGIGAALLASANS 483 (489)
Q Consensus 471 s~iGAA~~aa~~~ 483 (489)
+.+|||++|+.+.
T Consensus 430 ~alGaA~lA~~~~ 442 (497)
T 2zf5_O 430 TALGAAYLAGLAV 442 (497)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHh
Confidence 9999999998754
No 95
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=39.31 E-value=48 Score=34.57 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=43.5
Q ss_pred eeehhcccCcCCCccccEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhc-c-ChHHHHHHHHHhhhhHHHh
Q 011283 75 MILSYVDALPTGNERGLFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMC-G-TSEELFDFIATGLAKFAEK 152 (489)
Q Consensus 75 Mlpt~v~~lP~G~E~G~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~-~-~~~~lfd~Ia~~i~~~~~~ 152 (489)
|-|.+.. |.-....+|-+||+|-.++|..+++..++...++.......++-..+.. + =.++-.+...+++..|...
T Consensus 2 ~~~~~~~--~~~~~~~~~AaIDiGSNS~rL~I~~~~~~~~~~~~~~k~~vrLg~gl~~~g~Ls~eai~r~~~~L~~F~~~ 79 (508)
T 3hi0_A 2 MTRSEAQ--GRLTGLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRMHEEGVTRALMALRRFHVL 79 (508)
T ss_dssp --CCCCS--SSCTTCCCEEEEEECSSEEEEEEESCSSSSCCEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCccccc--cccccCCeEEEEEECCccEEEEEEEEcCCCceEEEEEeEEeecccCccccCCcCHHHHHHHHHHHHHHHHH
Confidence 4454532 3333445789999999999999999865433333332212333333221 1 1346677888888887553
No 96
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=39.04 E-value=10 Score=39.40 Aligned_cols=76 Identities=16% Similarity=0.361 Sum_probs=42.7
Q ss_pred ehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCC
Q 011283 391 VCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDG 470 (489)
Q Consensus 391 ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dg 470 (489)
++++|++= +|..+..++..+...... +...|.+.||.. +.+.+.+.+...+ + ..|.+....++
T Consensus 372 ~~rAvlEg----ia~~~~~~~~~l~~~~g~----~~~~i~~~GG~a-~n~~~~q~~Adv~----g----~pV~~~~~~e~ 434 (495)
T 2dpn_A 372 LARAALEG----VAFQVRDVVLAMEEEAGV----RLKVLKADGGMA-QNRLFLKIQADLL----G----VPVAVPEVTET 434 (495)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHTTTSC----CCCCEEEESGGG-GCHHHHHHHHHHH----T----SCEEEESCSCH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHhcCC----CCcEEEEecccc-cCHHHHHHHHHHh----C----CeeEecCCccc
Confidence 45555552 444555555555321000 112366677766 5677776665543 2 23544444678
Q ss_pred cchhHHHHhhccc
Q 011283 471 SGIGAALLASANS 483 (489)
Q Consensus 471 s~iGAA~~aa~~~ 483 (489)
+.+|||++|+.+.
T Consensus 435 ~alGaA~la~~a~ 447 (495)
T 2dpn_A 435 TALGAALMAGVGA 447 (495)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998753
No 97
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=38.24 E-value=51 Score=32.04 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=36.3
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhc-c-ChHHHHHHHHHhhhhHHHh
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMC-G-TSEELFDFIATGLAKFAEK 152 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~-~-~~~~lfd~Ia~~i~~~~~~ 152 (489)
+|-+||+|-+++|..+++..+....++.......++-..+.. + =.++-.+...+++.+|.+.
T Consensus 13 ~~a~IDiGSns~rl~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~~L~~f~~~ 76 (315)
T 1t6c_A 13 RVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKL 76 (315)
T ss_dssp EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECcCcEEEEEEEEcCCcEEEEeeeeEEeecCCCccccCCcCHHHHHHHHHHHHHHHHH
Confidence 688999999999999999864323333332212233222211 1 0235556677777777553
No 98
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=38.17 E-value=10 Score=33.57 Aligned_cols=61 Identities=11% Similarity=0.224 Sum_probs=36.9
Q ss_pred CCCchHHHHHHHHHHhcCcceE-eeeeeccc-----cccccccccc-cCceEEEEEecCCcceeEEee
Q 011283 197 TAGKDVVACLNEAMERQGLDMR-VSALVNDT-----VGTLAGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 197 ~~G~dv~~lL~~al~~~~l~v~-v~ai~NDt-----vatlla~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
-.|.++++.|.+.|+++|..|. +-.-..|+ .+..++++.. +....-=+|+|||+|.++.-|
T Consensus 30 haG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGTGiG~sIaAN 97 (166)
T 3s5p_A 30 HGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGTGIGISIAAN 97 (166)
T ss_dssp GGGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESSSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCcHHHHHHhh
Confidence 3577999999999998888752 21112222 1112222222 444556679999999998775
No 99
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=37.20 E-value=15 Score=40.51 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=31.7
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEE---EeccCCcc-hhHHHHhhc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVI---EHTKDGSG-IGAALLASA 481 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i---~~a~Dgs~-iGAA~~aa~ 481 (489)
.|++.|||+. +..+++.+.+.+++.- -.+.+ .+++|+++ +|+|++|+.
T Consensus 696 ~VvLsGGVa~-N~~Lr~~L~~~l~~~g-----~~v~~p~~~p~~DgGialGQA~~a~~ 747 (761)
T 3vth_A 696 KVVLSGGSFQ-NRYLLRRLIEKLSLSG-----FEVYSNSKVPCNDGGISLGQAVIANK 747 (761)
T ss_dssp EEEEESGGGG-SHHHHHHHHHHHHHTT-----CEEEECSSSCSSGGGHHHHHHHHHHH
T ss_pred EEEEECcHHH-HHHHHHHHHHHHHhCC-----CEEEecCCCCCCchHHHHHHHHHHHH
Confidence 6999999986 4567777777665421 11222 34567776 999998863
No 100
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=37.06 E-value=96 Score=27.26 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.8
Q ss_pred cEEEEecCCcceEEEEEEeCCc
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQ 112 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~ 112 (489)
++||||-|=+++=+++|+..|+
T Consensus 2 rILGIDPGl~~tG~gvi~~~g~ 23 (166)
T 4ep4_A 2 VVAGIDPGITHLGLGVVAVEGK 23 (166)
T ss_dssp EEEEEECCSSEEEEEEEEECSS
T ss_pred EEEEEccccCceEEEEEEecCC
Confidence 5799999999999999998775
No 101
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=35.48 E-value=19 Score=35.65 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=28.3
Q ss_pred eeeehhhhhhcCCccccchhhHHHHhhhccCCcccccceeEEEecCc
Q 011283 388 VIEVCDTIVKRGGRLAGAGIVSILQKIDEDSNGAIFGKRTVVAMDGG 434 (489)
Q Consensus 388 ~~~ia~~V~~RaA~l~aa~laaii~~~~~~~~~~~~~~~~~I~i~Gs 434 (489)
.+.+|+.+.++..+.+..++..++...+- . ..|+.|||
T Consensus 248 ~~~lA~~~~~~q~~~I~~av~~v~~~~~~--------~-~vv~aG~G 285 (334)
T 3cet_A 248 AENIAKNYYELWKELILENVENVAEKYGS--------K-KVVITGLG 285 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------C-EEEEESTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------C-eEEEeCCc
Confidence 45888999999988898888888766432 2 36777776
No 102
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=34.89 E-value=13 Score=33.10 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=38.2
Q ss_pred CCCchHHHHHHHHHHhcCcceE-eeeeeccc-----cccccccccc-cCceEEEEEecCCcceeEEee
Q 011283 197 TAGKDVVACLNEAMERQGLDMR-VSALVNDT-----VGTLAGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 197 ~~G~dv~~lL~~al~~~~l~v~-v~ai~NDt-----vatlla~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
-.|.++++.|.+.|+++|..|. +-.-..|+ .+..++++.. +....-=+|+|||+|.++.-|
T Consensus 29 haG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~sIaAN 96 (169)
T 3ph3_A 29 HGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGISIAAN 96 (169)
T ss_dssp GGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHhh
Confidence 4577999999999988887752 11111222 2222233322 444566679999999998765
No 103
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=34.39 E-value=15 Score=38.29 Aligned_cols=46 Identities=20% Similarity=0.445 Sum_probs=30.8
Q ss_pred EEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhccc
Q 011283 429 VAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANS 483 (489)
Q Consensus 429 I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~ 483 (489)
|.+.||.. +.+.+.+.+...+ + ..|.+....+++.+|||++|+.+.
T Consensus 411 i~~~GG~a-~s~~~~Q~~Adv~----g----~pV~~~~~~e~~alGaA~la~~~~ 456 (503)
T 2w40_A 411 LRCDGGMT-KNKPFMQFNSDII----N----TKIEVSKYKEVTSLGAAVLAGLEV 456 (503)
T ss_dssp EEEESGGG-GCHHHHHHHHHHH----T----SCEEEESCSCHHHHHHHHHHHHHT
T ss_pred EEEeCccc-cCHHHHHHHHHHH----C----CeEEecCCCcchHHHHHHHHHHHh
Confidence 66677766 5677776665543 2 245444456789999999998754
No 104
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=32.90 E-value=15 Score=31.95 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=38.1
Q ss_pred CCCchHHHHHHHHHHhcCcceE-eeeeeccc-----cccccccccc-cCceEEEEEecCCcceeEEee
Q 011283 197 TAGKDVVACLNEAMERQGLDMR-VSALVNDT-----VGTLAGARYW-DEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 197 ~~G~dv~~lL~~al~~~~l~v~-v~ai~NDt-----vatlla~~~~-~~~~~iglIlGTG~Na~yie~ 257 (489)
-.|.++++.|.+.|+++|..|. +-.-..|+ .+..++++.. +....-=+|+|||+|.++.-|
T Consensus 9 haG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaAN 76 (149)
T 3he8_A 9 HGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGISIAAN 76 (149)
T ss_dssp GGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHhh
Confidence 3578999999999998887752 11112222 2222223322 444555679999999998775
No 105
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=31.24 E-value=17 Score=32.21 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=50.9
Q ss_pred CCCCCCceEEEEeec--CcccchhhHHHHHhh-hcCCh-hHHHHHHHHHhHhhhccccccCCCCcceeehhcccCcC
Q 011283 13 TPRGGPRFTMAVRSN--VNVSVAPILTKLQKE-CAAPL-PVLRNVADAMTADMRAGLVVDGGGELKMILSYVDALPT 85 (489)
Q Consensus 13 ~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~-~~~~~-~~L~~i~~~f~~em~~gL~~~~~s~~~Mlpt~v~~lP~ 85 (489)
+|.+.++..+..... ..++++++|+++... |.-+. +-|.+=.++|.+++-+.|-.. -+|.||.++|.
T Consensus 63 ~~~g~~resi~lG~T~~~~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk------~IP~wInrl~~ 133 (168)
T 2wp7_A 63 TLLGPPDSVVDVGNTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGR------KIPSYITDLPS 133 (168)
T ss_dssp STTCSCSEEEEEEEECCCHHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSC------CCCHHHHTHHH
T ss_pred CCCCCeEEEEECCCccCCHHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCC------CCcHHHHHHHH
Confidence 456667888888776 446788999999887 64222 356888999999999999753 39999998874
No 106
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=30.36 E-value=35 Score=35.66 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=30.8
Q ss_pred EEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhccc
Q 011283 429 VAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASANS 483 (489)
Q Consensus 429 I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~~~ 483 (489)
|.+.||.. +.+.+.+.+...+ + ..|.+....+++.+|||++|+++.
T Consensus 429 i~~~GGga-ks~~~~Qi~ADvl----g----~pV~~~~~~e~~alGAA~lA~~a~ 474 (520)
T 4e1j_A 429 LRVDGGMV-ASDWTMQRLSDLL----D----APVDRPVILETTALGVAWLAGSRA 474 (520)
T ss_dssp EEEESGGG-GCHHHHHHHHHHH----T----SCEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEeCccc-cCHHHHHHHHHHh----C----CeEEecCCCccHHHHHHHHHHHHc
Confidence 55666655 6777777665533 2 245544457899999999998653
No 107
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=28.89 E-value=88 Score=30.73 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=37.7
Q ss_pred cEEEEecCCcceEEEEEEeCC-ccceeeecccccccccchhhc-cC-hHHHHHHHHHhhhhHHHh
Q 011283 91 LFYALDLGGTNFRVLRVQLGG-QEERVQATEFEQVSIPQELMC-GT-SEELFDFIATGLAKFAEK 152 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g-~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~i~~~~~~ 152 (489)
.|-+||+|-.++|..+.+... ....++.......++-+.+.. +. .++-.+...+++.+|.+.
T Consensus 17 ~~A~IDiGSNsiRL~I~~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~aL~~f~~~ 81 (343)
T 3cer_A 17 TVAGIDCGTNSIRLKIARVDADGMHEVVPRILRVIRLGQDVDKTHRFADEALERAYVAAREFAGV 81 (343)
T ss_dssp EEEEEEECSSCEEEEEEEEETTEEEEEEEEEEECCCTTTTHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcccceeEeEEEEEcCCCCEEEEEEEEEEeeCCCCccccCCcCHHHHHHHHHHHHHHHHH
Confidence 588999999999999999852 223334332222333333221 11 346677777888888654
No 108
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=27.26 E-value=33 Score=30.00 Aligned_cols=62 Identities=10% Similarity=0.116 Sum_probs=38.3
Q ss_pred cCCCchHHHHHHHHHHhcCcceEeeeeecccc------cccccccc-ccCceEEEEEecCCcceeEEee
Q 011283 196 GTAGKDVVACLNEAMERQGLDMRVSALVNDTV------GTLAGARY-WDEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 196 ~~~G~dv~~lL~~al~~~~l~v~v~ai~NDtv------atlla~~~-~~~~~~iglIlGTG~Na~yie~ 257 (489)
+-.|.++++.|.+.|+++|..|.=....++.. +..++++. .+....-=+|+|||+|.++.-|
T Consensus 20 DhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaAN 88 (155)
T 1o1x_A 20 DHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGTGLGMSIAAN 88 (155)
T ss_dssp CSTTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHHHHHhh
Confidence 34688999999999998888652111111111 11122222 2445566679999999998765
No 109
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=27.04 E-value=22 Score=38.55 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=29.4
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceE---EEeccCCcc-hhHHHHhhc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVV---IEHTKDGSG-IGAALLASA 481 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~---i~~a~Dgs~-iGAA~~aa~ 481 (489)
.|++.|||+.. ..+++.+.+.++ + -++. .++++|+++ +|.|++|+.
T Consensus 602 ~VvLsGGV~~N-~~Lre~L~~~l~---g----~~v~~p~~~p~~DnGiaLGQA~~a~~ 651 (657)
T 3ttc_A 602 TLVFSGGVIHN-RLLRARLAHYLA---D----FTLLFPQSLPAGDGGLSLGQGVIAAA 651 (657)
T ss_dssp EEEEESGGGGC-HHHHHHHHHHTT---T----SEEECCCSSCSSGGGHHHHHHHHHHH
T ss_pred EEEEECcHHHH-HHHHHHHHHHhC---C----CEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 69999999874 456666655442 1 1121 245577777 999988763
No 110
>3tai_A DNA double-strand break repair protein NURA; recombination, hydrolase; HET: DNA; 2.82A {Pyrococcus furiosus} PDB: 3tal_A* 3taz_A*
Probab=26.95 E-value=44 Score=34.07 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=39.9
Q ss_pred cCChhHHHHHHHHHhHhhhccccccCCCCcceeehhcccCcCCCccccEEEEe
Q 011283 44 AAPLPVLRNVADAMTADMRAGLVVDGGGELKMILSYVDALPTGNERGLFYALD 96 (489)
Q Consensus 44 ~~~~~~L~~i~~~f~~em~~gL~~~~~s~~~Mlpt~v~~lP~G~E~G~~LaID 96 (489)
-+|++.+++|.+-+.+++++-.+. -.+.|++++...+|+..+ ..+.|+|
T Consensus 23 ~is~~~~~~I~~~L~~~l~~~~~~---~~ie~i~~~W~elPe~~~-~~iaAVD 71 (471)
T 3tai_A 23 LLSKQSIERITKILLDELENVREN---EQIRNIINSWKPLPSPEK-SSIYAVD 71 (471)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTTC---SSHHHHHHTCBCCCCCCC-CEEEEEE
T ss_pred eccHhHHHHHHHHHHHHHHHHHhh---hchhhhhhhceECCCCCC-ceEEEec
Confidence 388999999999999998877654 268899999999997644 4788998
No 111
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=25.50 E-value=1.1e+02 Score=31.75 Aligned_cols=62 Identities=24% Similarity=0.275 Sum_probs=40.0
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhc-cC-hHHHHHHHHHhhhhHHHh
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMC-GT-SEELFDFIATGLAKFAEK 152 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~i~~~~~~ 152 (489)
.|-+||+|-.++|..+++..++..+++.......++-..+.. +. .++-.+...+++..|...
T Consensus 12 ~~AaIDiGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~eai~r~~~~L~~f~~~ 75 (513)
T 1u6z_A 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAER 75 (513)
T ss_dssp CEEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCCBCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeccccEEEEEEEEcCCeeEEEEeeEEEEeccCcccccCCcCHHHHHHHHHHHHHHHHH
Confidence 588999999999999999854433444433223333333321 11 256778888888888654
No 112
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=25.48 E-value=5e+02 Score=27.48 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=32.0
Q ss_pred cEEEEecCCcceEEEEEEeCCccceeeecccccccccchhhccChHHHHHHHHHhhhhHHHhh
Q 011283 91 LFYALDLGGTNFRVLRVQLGGQEERVQATEFEQVSIPQELMCGTSEELFDFIATGLAKFAEKE 153 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~ 153 (489)
++.+||+|-|+..+++-+..++.-+++..- ..+ .+.+ +++.+.+ +-+.+.|++.+++.
T Consensus 3 ~i~GiDIGnsttev~l~~~~~g~i~~l~~g--~~~-ttGi-KGt~~Ni-~g~~~si~~a~~~a 60 (607)
T 1nbw_A 3 LIAGIDIGNATTEVALASDYPQARAFVASG--IVA-TTGM-KGTRDNI-AGTLAALEQALAKT 60 (607)
T ss_dssp EEEEEEECSSEEEEEEEECBTTBCCCCEEE--EEE-CCSS-TTSGGGH-HHHHHHHHHHHTTS
T ss_pred EEEEEEecCceEEEEEEEEcCCeEEEEEee--ccc-CCcc-ceeeeCH-HHHHHHHHHHHHHh
Confidence 578999999999999877654322233221 111 1223 3544433 33445566665543
No 113
>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI acetate kinase, transferase; HET: PGE; 1.90A {Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A
Probab=25.40 E-value=31 Score=34.81 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=21.4
Q ss_pred ceEEEEEecCCcceeEEeeccccccc
Q 011283 239 DVMVAVILGTGTNACYVEQMDAIPKL 264 (489)
Q Consensus 239 ~~~iglIlGTG~Na~yie~~~~i~~~ 264 (489)
-+.|-+=||.|+..|-+.+++.+...
T Consensus 195 ~~lIv~HLGnGaSv~Ai~~GksvDts 220 (391)
T 3r9p_A 195 LKQIVLHLGNGCSASAIAGTRPLDTS 220 (391)
T ss_dssp CEEEEEEESSSEEEEEEETTEEEEES
T ss_pred cCEEEEEeCCCcEeEEEECCEEEeeC
Confidence 37899999999999999998765443
No 114
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=23.40 E-value=43 Score=29.04 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=37.8
Q ss_pred cCCCchHHHHHHHHHHhcCcceEeeee-ecccc-----cccccccc-ccCceEEEEEecCCcceeEEee
Q 011283 196 GTAGKDVVACLNEAMERQGLDMRVSAL-VNDTV-----GTLAGARY-WDEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 196 ~~~G~dv~~lL~~al~~~~l~v~v~ai-~NDtv-----atlla~~~-~~~~~~iglIlGTG~Na~yie~ 257 (489)
+-.|+++++.|.+.|+++|..|.=... ..|++ +..++++. .+....-=+|+|||+|.++.-|
T Consensus 9 DhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaAN 77 (149)
T 2vvr_A 9 DHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVGISIAAN 77 (149)
T ss_dssp CTTGGGGHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcHHHHHHHh
Confidence 345789999999999988876521111 11211 11122222 2445566679999999998775
No 115
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=23.35 E-value=3.8e+02 Score=25.73 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=28.6
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEE---eccCCc-chhHHHHhh
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIE---HTKDGS-GIGAALLAS 480 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~---~a~Dgs-~iGAA~~aa 480 (489)
.|++.|||+. +..+++.+.+.+++. + .++.+- +++|++ .+|+|....
T Consensus 247 ~vvlsGGVa~-N~~l~~~l~~~l~~~-g----~~v~~p~~~~~~D~G~~iG~a~~~~ 297 (330)
T 2ivn_A 247 EVVLVGGVAA-NNRLREMLRIMTEDR-G----IKFFVPPYDLCRDNGAMIAYTGLRM 297 (330)
T ss_dssp EEEEESGGGG-CHHHHHHHHHHHHHH-T----CEEECCCHHHHSSCHHHHHHHHHHH
T ss_pred eEEEEccHHH-HHHHHHHHHHHHHHc-C----CEEEecCCCCCChhHHHHHHHHHHH
Confidence 5999999987 455777777666432 1 122222 355555 889887543
No 116
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=23.06 E-value=46 Score=34.84 Aligned_cols=39 Identities=36% Similarity=0.494 Sum_probs=28.2
Q ss_pred Ccc--eEeeeeeccccccccccccccCceEEEEEecCCcceeE
Q 011283 214 GLD--MRVSALVNDTVGTLAGARYWDEDVMVAVILGTGTNACY 254 (489)
Q Consensus 214 ~l~--v~v~ai~NDtvatlla~~~~~~~~~iglIlGTG~Na~y 254 (489)
|++ +.|++-.-|+.+++++.. . ....+.+++||+.--..
T Consensus 269 Gl~~g~pV~~g~~D~~aa~~g~~-~-~~g~~~~s~GTs~~~~~ 309 (538)
T 4bc3_A 269 GFPPGCKVVAFTGDNPASLAGMR-L-EEGDIAVSLGTSDTLFL 309 (538)
T ss_dssp CCCTTCEEECCEEHHHHHHHHTT-C-CTTCEEEEESSSEEEEE
T ss_pred CCCCCCeEEEecccHHhhhhccc-c-CCCcEEEEeccchheEE
Confidence 664 667888999999999874 3 34567889999844333
No 117
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=22.95 E-value=1.6e+02 Score=28.74 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=22.8
Q ss_pred CcCCCccccEEEEecCCcceEEEEEEeCCc
Q 011283 83 LPTGNERGLFYALDLGGTNFRVLRVQLGGQ 112 (489)
Q Consensus 83 lP~G~E~G~~LaIDlGGTnlRv~lV~l~g~ 112 (489)
+..+.....++.+|+||.++-+.+++..+.
T Consensus 199 ~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~ 228 (394)
T 3qfu_A 199 LDKSDKEHQIIVYDLGGGTFDVSLLSIENG 228 (394)
T ss_dssp TTSCSSCEEEEEEEECSSCEEEEEEEEETT
T ss_pred hccCCCCceEEEEEcCCCceeEEEEEEeCC
Confidence 333444557899999999999999987543
No 118
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=22.89 E-value=25 Score=30.95 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=36.7
Q ss_pred CCchHHHHHHHHHHhcCcceEeeee-ecc-cc-----cccccccc-ccCceEEEEEecCCcceeEEee
Q 011283 198 AGKDVVACLNEAMERQGLDMRVSAL-VND-TV-----GTLAGARY-WDEDVMVAVILGTGTNACYVEQ 257 (489)
Q Consensus 198 ~G~dv~~lL~~al~~~~l~v~v~ai-~ND-tv-----atlla~~~-~~~~~~iglIlGTG~Na~yie~ 257 (489)
.|+++++.|.+.|+++|..|.=... ..| ++ +..++++. .+....-=+|+|||+|.++.-|
T Consensus 13 aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaAN 80 (162)
T 2vvp_A 13 AGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGSGNGEQIAAN 80 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHHSTTCEEEEEESSSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcHHHHHHHh
Confidence 4678999999999888886521111 122 10 11122222 2445566679999999998775
No 119
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=22.36 E-value=47 Score=34.16 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=26.3
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceEEEeccCCcchhHHHHhhc
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHTKDGSGIGAALLASA 481 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a~Dgs~iGAA~~aa~ 481 (489)
.|.+.||.. +.+.+.+.+...+ + ..|.... .+++.+|||++|+.
T Consensus 396 ~i~~~GGga-ks~~~~Qi~ADvl----g----~pV~~~~-~e~~alGaa~~A~~ 439 (489)
T 2uyt_A 396 QLHIVGGGC-QNTLLNQLCADAC----G----IRVIAGP-VEASTLGNIGIQLM 439 (489)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----T----SEEEECC-TTHHHHHHHHHHHH
T ss_pred EEEEeCChh-hhHHHHHHHHHHH----C----CeeecCC-ccHhHHHHHHHHHH
Confidence 366666666 5677776655443 2 1343323 68899999666654
No 120
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=22.28 E-value=61 Score=32.30 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=32.7
Q ss_pred EEEecCccccchhHHHHHHHHHHHHhhCcccccceE-EEeccCCcchhHHHHh
Q 011283 428 VVAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVV-IEHTKDGSGIGAALLA 479 (489)
Q Consensus 428 ~I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~-i~~a~Dgs~iGAA~~a 479 (489)
.|++.||....+|.+.+.+.+++.-+-.. ..++. .+...-.+.+|||+.+
T Consensus 308 ~IvftGgfla~n~~~~~~L~~~l~~ws~g--~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 308 RVVFVGNFLRINMVSMKLLAYAMDFWSKG--QLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp CEEEESGGGCSSSHHHHHHHHHHHHHTTT--SCCEEEETTTTCHHHHHHHHHH
T ss_pred eEEEeCcccccCHHHHHHHHHHHhhhhcC--CeeEEEcCCccHHHHHHHHHHh
Confidence 38999998889999999999888654321 11222 2334455667777664
No 121
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=20.60 E-value=78 Score=31.14 Aligned_cols=54 Identities=28% Similarity=0.353 Sum_probs=36.0
Q ss_pred EEecCccccchhHHHHHHHHHHHHhhCcccccceEEEec---cCCcchhHHHHhhcccccc
Q 011283 429 VAMDGGLYEHYTQYRRYVHEAVTELLGTEISKNVVIEHT---KDGSGIGAALLASANSKFD 486 (489)
Q Consensus 429 I~i~Gsv~~~~~~f~~~i~~~l~~~~~~~~~~~v~i~~a---~Dgs~iGAA~~aa~~~~~~ 486 (489)
|++-||. ...|.|.+++++.+..+.... .++++..+ ..+.-+||+++|. ...|+
T Consensus 297 IvLtGG~-s~~pG~~~rl~~el~~~~p~~--~~v~v~~~~~p~~~~w~G~si~a~-l~~f~ 353 (375)
T 2fxu_A 297 NVMSGGT-TMYPGIADRMQKEITALAPST--MKIKIIAPPERKYSVWIGGSILAS-LSTFQ 353 (375)
T ss_dssp EEEESGG-GCSTTHHHHHHHHHHHHSCTT--CCCCEECCTTTTSHHHHHHHHHHH-CGGGG
T ss_pred cEeeCCC-CCCccHHHHHHHHHHHhCCCC--eeEEEEcCCCCCccEEcchHHhhC-cccHh
Confidence 5555554 347899999999998876542 23555443 4677899999887 33443
No 122
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*
Probab=20.33 E-value=58 Score=31.06 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=16.8
Q ss_pred cEEEEecCCcceEEEEEE
Q 011283 91 LFYALDLGGTNFRVLRVQ 108 (489)
Q Consensus 91 ~~LaIDlGGTnlRv~lV~ 108 (489)
-.|+||+|-||+++++++
T Consensus 24 M~L~IDiGNT~ik~g~~~ 41 (271)
T 2f9w_A 24 MILELDCGNSLIKWRVIE 41 (271)
T ss_dssp EEEEEEECSSCEEEEEEE
T ss_pred cEEEEEeCCCeeEEEEEe
Confidence 479999999999999997
Done!