Query 011285
Match_columns 489
No_of_seqs 138 out of 152
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 23:39:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3817 Uncharacterized conser 100.0 1.9E-66 4.1E-71 523.4 10.5 330 31-471 16-359 (452)
2 PF10225 DUF2215: Uncharacteri 100.0 4.8E-57 1E-61 445.5 18.6 229 150-470 1-233 (249)
3 COG1295 Rbn Ribonuclease BN fa 66.0 23 0.00049 36.5 7.7 68 201-271 202-278 (303)
4 PRK04214 rbn ribonuclease BN/u 63.8 16 0.00035 39.1 6.4 78 197-277 188-273 (412)
5 PF03631 Virul_fac_BrkB: Virul 63.5 20 0.00044 35.3 6.6 70 199-271 173-250 (260)
6 TIGR00765 yihY_not_rbn YihY fa 62.5 19 0.00041 35.9 6.3 71 198-271 172-250 (259)
7 PRK01637 hypothetical protein; 59.2 21 0.00046 36.2 6.0 70 199-271 183-260 (286)
8 PF07779 Cas1_AcylT: 10 TM Acy 57.7 1.2E+02 0.0026 33.8 11.8 115 187-310 73-212 (488)
9 PLN00010 cyclin-dependent kina 54.8 6.9 0.00015 33.7 1.4 19 423-441 29-47 (86)
10 KOG2927 Membrane component of 54.5 16 0.00035 38.9 4.3 71 125-201 159-234 (372)
11 PF06570 DUF1129: Protein of u 48.5 86 0.0019 30.4 8.0 14 199-212 123-136 (206)
12 COG4425 Predicted membrane pro 46.7 4.7E+02 0.01 29.5 15.5 149 166-336 54-215 (588)
13 PRK12302 bssR biofilm formatio 45.5 23 0.0005 31.9 3.2 42 427-468 61-105 (127)
14 PTZ00453 cyclin-dependent kina 45.0 14 0.00029 32.5 1.7 18 424-441 54-71 (96)
15 PRK14750 kdpF potassium-transp 43.0 31 0.00067 24.1 2.8 24 188-211 2-25 (29)
16 COG5548 Small integral membran 42.8 44 0.00096 29.6 4.5 56 166-225 35-90 (105)
17 PF01111 CKS: Cyclin-dependent 40.8 13 0.00028 31.0 0.9 17 424-440 28-44 (70)
18 KOG3484 Cyclin-dependent prote 40.7 14 0.0003 31.8 1.1 17 424-440 32-48 (91)
19 PRK08382 putative monovalent c 40.1 1.6E+02 0.0035 29.1 8.5 62 147-214 18-80 (201)
20 KOG2927 Membrane component of 37.5 65 0.0014 34.6 5.6 16 261-277 243-258 (372)
21 PF01102 Glycophorin_A: Glycop 36.0 19 0.00042 32.9 1.3 35 177-211 59-93 (122)
22 PF01034 Syndecan: Syndecan do 35.7 12 0.00027 30.6 0.0 25 188-212 15-39 (64)
23 PF07856 Orai-1: Mediator of C 35.5 54 0.0012 31.7 4.3 28 160-188 109-136 (175)
24 TIGR02413 Bac_small_yrzI Bacil 35.0 25 0.00053 27.1 1.5 26 424-451 11-36 (46)
25 TIGR00766 ribonuclease, putati 31.0 1.9E+02 0.0041 28.8 7.6 42 199-240 178-219 (263)
26 PF09501 Bac_small_YrzI: Proba 30.9 51 0.0011 25.4 2.6 26 424-451 11-36 (46)
27 PF03904 DUF334: Domain of unk 30.7 54 0.0012 33.1 3.6 28 184-211 149-176 (230)
28 PF10799 YliH: Biofilm formati 28.6 61 0.0013 29.6 3.2 42 427-468 61-105 (127)
29 PRK14748 kdpF potassium-transp 27.3 77 0.0017 22.2 2.7 23 188-210 2-24 (29)
30 PF14615 Rsa3: Ribosome-assemb 27.3 98 0.0021 23.9 3.7 26 433-458 4-29 (47)
31 PF10215 Ost4: Oligosaccaryltr 25.6 49 0.0011 24.1 1.6 21 187-207 8-28 (35)
32 PF07637 PSD5: Protein of unkn 23.6 76 0.0017 25.4 2.6 32 425-456 14-58 (64)
33 PF09972 DUF2207: Predicted me 23.4 1.9E+02 0.0042 30.7 6.4 42 181-224 423-464 (511)
34 COG2510 Predicted membrane pro 22.3 3.8E+02 0.0082 25.3 7.1 88 182-271 30-134 (140)
35 PF01102 Glycophorin_A: Glycop 21.7 49 0.0011 30.3 1.3 22 189-210 67-88 (122)
36 TIGR00788 fbt folate/biopterin 21.6 7.7E+02 0.017 26.5 10.7 56 183-239 351-408 (468)
37 PF07787 DUF1625: Protein of u 21.4 94 0.002 31.0 3.4 20 295-314 180-199 (248)
38 PF13829 DUF4191: Domain of un 20.8 99 0.0021 31.2 3.3 51 157-211 26-76 (224)
39 KOG3817 Uncharacterized conser 20.7 93 0.002 33.7 3.3 55 188-249 169-223 (452)
40 PF01350 Flavi_NS4A: Flaviviru 20.1 1E+02 0.0023 29.1 3.1 53 164-216 58-124 (144)
No 1
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.9e-66 Score=523.37 Aligned_cols=330 Identities=25% Similarity=0.357 Sum_probs=262.3
Q ss_pred eeeecceeEEeCCCceeccCCC--CCCCCeeeeeeecccCcccccchhhheeeEE-EEEEeCCCC----CCCChhhhhhc
Q 011285 31 LVVGQYTTLRLSPGLAVENSPG--IKPGAKVFCERVSIHGFSRLRDLRKFAHSLK-VKVSQNSSS----LRRSNVEVCFH 103 (489)
Q Consensus 31 ~~~~~~~~~~l~p~~~v~~s~~--~~pg~~~~C~r~~~~G~~r~k~l~~~~~tv~-V~v~~ss~~----~~~~~~Evcqh 103 (489)
.-.-++++.+++||.++..+.- +.+.+.+||+.++-+.+. .++.++. +.+ .++|. .|.+++||.||
T Consensus 16 y~ta~~dv~~~~~~q~~~v~ek~~s~q~~~t~~~~~k~~~I~------s~~~~~~~~~l-~~~dqy~~y~g~~~~ev~q~ 88 (452)
T KOG3817|consen 16 YNTASSDVAYLTPGQYINVSEKILSLQTLRTFCYPGKRLTIS------SLFETVEFVLL-IGSDQYSQYGGKTPEEVLQH 88 (452)
T ss_pred cCccccccccccchHHHHHHHHHHHHHHHHhhhcCcchhhHH------HHHHHHHHHHH-hcchHHHHhcCCCHHHHHHH
Confidence 3445567788999998765522 245567889888664443 2222211 112 33333 36799999999
Q ss_pred cccccccccccccccccccCC--cEEEEeCCCCCceEEEEecCCCCcCeEEEEE-eeehhHHHHHHHHHHHHHhhhhccc
Q 011285 104 RNASLGVGMCSQGRWQKVSKG--LWVQSMSPFDHKILDIRTTTSPLEPLEVSIE-EEFFFYRIVFFILGIILMTLASSLS 180 (489)
Q Consensus 104 ~n~~~~~~~C~q~~W~~~~~~--~~~~~isPF~~~~igvr~~~~~~~~y~vsv~-~~~~~~rl~~fv~Gi~Lf~~A~~LS 180 (489)
+|+. ++.++-..+. ....++|||++.|+|| ++.++|++.+. +++|.||++.|++||+|||+|+.||
T Consensus 89 y~~~-------~s~f~i~l~a~~~~~~qlspf~~~~Vgi----s~~~~y~~~i~i~r~d~krflvfv~gi~Lff~ar~Ls 157 (452)
T KOG3817|consen 89 YKDK-------QSLFSITLFAQKRQLLQLSPFEQQCVGI----SSRQAYTVIINIIRLDLKRFLVFVVGILLFFSARRLS 157 (452)
T ss_pred Hhhh-------HHHHHHHHHHHHHHhhcCCcccceEEee----eccCceEEEEEEEeccHHHHHHHHHHHHHHHHHHHhc
Confidence 9987 5455443332 2368999999999999 88899999996 8899999999999999999999999
Q ss_pred CCceeeeechhHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhhccchhHHHHHHHHHHHHHHHHHhccCCCCCchhhH
Q 011285 181 KSLVFYYGSAMAVGIILVILMVLFQGMKLLPTGRKNSLAIFMYSSLIGLGSFLLRYLPGLLRSILTEIGIGEDMYNPLAI 260 (489)
Q Consensus 181 rs~~FYYssG~slGVlaslLIllf~~~RllP~grks~~~ilmyG~~vg~g~~~~~yl~~~~~~iL~~~~~~e~~~~p~~~ 260 (489)
||++|||++||++||+||+|+++|+++|++|| |++ |||.++| ||+++.|+++++++||+++|+ |+ +.
T Consensus 158 rn~vFYYssG~v~GilaSLl~Viflv~rf~PK--kt~----~~~iliG-gWs~slY~i~ql~~nLq~Iwi-ey-----r~ 224 (452)
T KOG3817|consen 158 RNSVFYYSSGIVIGILASLLVVIFLVARFFPK--KTM----MYGILIG-GWSISLYVIKQLADNLQLIWI-EY-----RD 224 (452)
T ss_pred cCceEEEecccHHHHHHHHHHHHHHHHHhccc--ccc----eEEEEEc-cchhHHHHHHHHHHHHHHHHH-HH-----HH
Confidence 99999999999999999999999999999996 444 4555555 999999999999999999984 42 67
Q ss_pred HHHHHHHhhhcceeeEEEEE-eccCCCCccccccchhhHHHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHhhhhHH
Q 011285 261 FLVAFVVLAGAWLGFWVVRK-LVLTEDGSIDISTSNFVAWSIRILAVIMILQSSLDPLLAAEALVSGVLVSSILRNFTKL 339 (489)
Q Consensus 261 ~vl~yv~~vG~~isF~vcyr-gpl~~~rSid~~t~~~v~W~Lqligl~LIy~ss~~~~~a~~Ali~~~l~~~~~~~~~~~ 339 (489)
||+||+++||+ |||+|||| |||+|+||+|+ ++|+||++|++|+|+|+|++++|+ |+|+..+|...+ .
T Consensus 225 yvLgYvlivgl-iSfaVCYK~GPp~d~RS~~i-----lmWtLqli~lvl~Yfsvq~p~~a~-A~iI~~lc~~~l-~---- 292 (452)
T KOG3817|consen 225 YVLGYVLIVGL-ISFAVCYKIGPPKDPRSQTI-----LMWTLQLIGLVLAYFSVQHPSAAI-AAIIMVLCFVAL-Y---- 292 (452)
T ss_pred HHHHHHHHHHH-HHHhhhhccCCCCCcchhhH-----HHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHH-h----
Confidence 99999999997 99999999 99999999996 799999999999999999999999 666656665522 1
Q ss_pred HHHHHHHHhhhhhccccccCCCCCCCCCCCCcccccccCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 011285 340 RLLRRARKKFKIVKNFFRHSQLPDLSPFQNSCDEYMYKSPEDKFVWRWSKRFSLSSCNSPLQGHSGSSPRKLSDSEIYPS 419 (489)
Q Consensus 340 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~s 419 (489)
+|++|. .++ ..+++|+.
T Consensus 293 --------------~pIrw~-------------~~~-----~~kv~r~f------------------------------- 309 (452)
T KOG3817|consen 293 --------------FPIRWT-------------NQI-----KFKVRRRF------------------------------- 309 (452)
T ss_pred --------------ccHHHH-------------HHH-----HHHHHhhc-------------------------------
Confidence 334441 111 01224442
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHHHHHHHHhh---cCCCCCcchhccccceeecC
Q 011285 420 AFHSTPERRKFSKEEWERFTRDSTERALEGLV---SSPDFSKWVAANAERITVTP 471 (489)
Q Consensus 420 ~fh~~p~rR~LT~eEye~qg~~eT~kAL~EL~---~SPef~~W~~~na~Ri~~~p 471 (489)
||-+||+|||||||+||+.||+|||+||| ++|||++|+++ .||+...
T Consensus 310 ---kpl~rRlLtEeEYeeQaeveT~kaLaeLReycnkpd~~~Wkvv--grlrsp~ 359 (452)
T KOG3817|consen 310 ---KPLKRRLLTEEEYEEQAEVETSKALAELREYCNKPDCKQWKVV--GRLRSPL 359 (452)
T ss_pred ---cccchhhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhh--hhccCHH
Confidence 37789999999999999999999999997 99999999999 9988643
No 2
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=100.00 E-value=4.8e-57 Score=445.45 Aligned_cols=229 Identities=37% Similarity=0.639 Sum_probs=195.6
Q ss_pred eEEEEEeeehhHHHHHHHHHHHHHhhhhcccCCceeeeechhHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhhccch
Q 011285 150 LEVSIEEEFFFYRIVFFILGIILMTLASSLSKSLVFYYGSAMAVGIILVILMVLFQGMKLLPTGRKNSLAIFMYSSLIGL 229 (489)
Q Consensus 150 y~vsv~~~~~~~rl~~fv~Gi~Lf~~A~~LSrs~~FYYssG~slGVlaslLIllf~~~RllP~grks~~~ilmyG~~vg~ 229 (489)
|+|++++++|.||+++|++||+||++|++||||++|||++||++||+++++|++|+++|++| ||+.++++++|++ ++
T Consensus 1 y~v~~~~~~d~~r~~~~v~Gi~Lf~~A~~LS~s~~FyY~sg~~lGv~~s~li~~~~~~k~lP--rk~~~~~~l~gg~-~~ 77 (249)
T PF10225_consen 1 YTVSVEEEFDFWRVAQFVLGIVLFFLAPSLSRSVLFYYSSGISLGVLASLLILLFQLSKLLP--RKSMFYAVLYGGW-SF 77 (249)
T ss_pred CEEEEEEEEcHHHHHHHHHHHHHHHHhHHhccChhHHHhhhHHHHHHHHHHHHHHHHHHHcc--CcchhHHHHhhhh-HH
Confidence 89999988999999999999999999999999999999999999999999999999999999 5899999999987 88
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHhhhcceeeEEEEE-eccCCCCccccccchhhHHHHHHHHHHH
Q 011285 230 GSFLLRYLPGLLRSILTEIGIGEDMYNPLAIFLVAFVVLAGAWLGFWVVRK-LVLTEDGSIDISTSNFVAWSIRILAVIM 308 (489)
Q Consensus 230 g~~~~~yl~~~~~~iL~~~~~~e~~~~p~~~~vl~yv~~vG~~isF~vcyr-gpl~~~rSid~~t~~~v~W~Lqligl~L 308 (489)
|.|+++++++|++.++.+++ .|+++|++++|+ +||++||| ||++|+|+ +||++|+||++|++|
T Consensus 78 ~~y~l~~~~~nl~~il~~~~----------~~v~~yv~~~G~-vsf~vcy~~gp~~~~rs-----~~~v~W~Lqligl~l 141 (249)
T PF10225_consen 78 GLYFLQQLWENLQSILEEYR----------IYVLGYVLVVGL-VSFAVCYRYGPPVDPRS-----RNFVKWALQLIGLVL 141 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH-HHHHhhcccCCCccHhH-----HHHHHHHHHHHHHHH
Confidence 99999999999999999974 489999999998 99999997 77777665 457999999999999
Q ss_pred HHhhccchHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhccccccCCCCCCCCCCCCcccccccCCCCccccccc
Q 011285 309 ILQSSLDPLLAAEALVSGVLVSSILRNFTKLRLLRRARKKFKIVKNFFRHSQLPDLSPFQNSCDEYMYKSPEDKFVWRWS 388 (489)
Q Consensus 309 Iy~ss~~~~~a~~Ali~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~r~~ 388 (489)
||+|++++++|+ |+++++++.+.+.... .|+...... +|
T Consensus 142 I~~ss~~~~~a~-~~i~~~l~~~~l~~~~--~~~~~~~~~------------------------------------~~-- 180 (249)
T PF10225_consen 142 IYFSSQDPEFAF-AAIILLLLWKSLYYPI--SWLKRVRRK------------------------------------YR-- 180 (249)
T ss_pred HHHHcCcHHHHH-HHHHHHHHHHHhhhHH--HHHHHHHHH------------------------------------Hh--
Confidence 999999999999 4444454443221111 122222200 22
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCcCCCCCHHHHHHHHHHHHHHHHHHhh---cCCCCCcchhcccc
Q 011285 389 KRFSLSSCNSPLQGHSGSSPRKLSDSEIYPSAFHSTPERRKFSKEEWERFTRDSTERALEGLV---SSPDFSKWVAANAE 465 (489)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~s~fh~~p~rR~LT~eEye~qg~~eT~kAL~EL~---~SPef~~W~~~na~ 465 (489)
..|++||+||+|||||||+||++||+|||+||| +||||++|+++ +
T Consensus 181 ------------------------------~~~~~p~~rr~LteeEy~~q~~~eT~kaL~eLr~~c~sp~~~~W~~~--s 228 (249)
T PF10225_consen 181 ------------------------------RRFTSPPKRRLLTEEEYEEQGERETRKALEELREYCNSPDCNSWKTV--S 228 (249)
T ss_pred ------------------------------heecCCCccccccccchhhcchHhHHHHHHHHHHHhCCCCCCcchhh--c
Confidence 235679999999999999999999999999995 99999999988 9
Q ss_pred ceeec
Q 011285 466 RITVT 470 (489)
Q Consensus 466 Ri~~~ 470 (489)
|+|.-
T Consensus 229 ~l~~p 233 (249)
T PF10225_consen 229 RLQSP 233 (249)
T ss_pred cccCC
Confidence 99843
No 3
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=65.96 E-value=23 Score=36.55 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=40.1
Q ss_pred HHHHHHhhhcCCCCcch-HHHHHHhhccchhHHHHHHHHHHHHHHHHHhccCCCCCch--------hhHHHHHHHHhhhc
Q 011285 201 MVLFQGMKLLPTGRKNS-LAIFMYSSLIGLGSFLLRYLPGLLRSILTEIGIGEDMYNP--------LAIFLVAFVVLAGA 271 (489)
Q Consensus 201 Illf~~~RllP~grks~-~~ilmyG~~vg~g~~~~~yl~~~~~~iL~~~~~~e~~~~p--------~~~~vl~yv~~vG~ 271 (489)
+++..+.|.+|++|+-. -+++..+.+-+++|.+..+.......+...|.. .|-. +|+|+.+.+++.|+
T Consensus 202 ~~f~~ly~~lP~~~~~~~~~~~~Ga~~aai~~~i~~~~f~~Yv~~~~~y~~---~YGalgsvi~lmlw~y~~~~I~l~Ga 278 (303)
T COG1295 202 LGFFLLYRFLPNVRVLKWRDVLPGALLAAILFELGKYLFGYYLSNFANYSS---TYGALGSVIILLLWLYISALIILLGA 278 (303)
T ss_pred HHHHHHHHHcCCccccchHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 56677899999984443 335544444446777777777776666555431 1110 25566666666665
No 4
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=63.84 E-value=16 Score=39.13 Aligned_cols=78 Identities=18% Similarity=0.116 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhhcCCCCcchHHHHHHhhccchhHHHHHHHHHHHHHHHHHhccCCCCCch--------hhHHHHHHHHh
Q 011285 197 LVILMVLFQGMKLLPTGRKNSLAIFMYSSLIGLGSFLLRYLPGLLRSILTEIGIGEDMYNP--------LAIFLVAFVVL 268 (489)
Q Consensus 197 aslLIllf~~~RllP~grks~~~ilmyG~~vg~g~~~~~yl~~~~~~iL~~~~~~e~~~~p--------~~~~vl~yv~~ 268 (489)
+...+++.++.+++|.+|...-.++..|.+.+++|.+.+++..........|+ ..|-. +|+|+.+.+++
T Consensus 188 ~~~~~~f~~lY~~~Pn~~v~~r~al~Gai~a~vl~~~~~~~f~~yv~~~~~y~---~iYGs~a~v~i~LlWlyls~~I~L 264 (412)
T PRK04214 188 AFETVCLTLLYRVVPNHFVPLRHALPGALLTAVLLELVKWGFGFYLGNFQTYQ---RIYGAFAAVPILLLWIYLLWVLVL 264 (412)
T ss_pred HHHHHHHHHHHHHcCCCccchHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566889999987655555555555555777777776666555443331 01111 27788999999
Q ss_pred hhcceeeEE
Q 011285 269 AGAWLGFWV 277 (489)
Q Consensus 269 vG~~isF~v 277 (489)
.|+-+.++.
T Consensus 265 ~Gael~~~~ 273 (412)
T PRK04214 265 LGASLTSSL 273 (412)
T ss_pred HHHHHHHHH
Confidence 998776665
No 5
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=63.54 E-value=20 Score=35.26 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhcCCCCcchHHHHHHhhccchhHHHHHHHHHHHHHHHHHhccCCCCCchh--------hHHHHHHHHhhh
Q 011285 199 ILMVLFQGMKLLPTGRKNSLAIFMYSSLIGLGSFLLRYLPGLLRSILTEIGIGEDMYNPL--------AIFLVAFVVLAG 270 (489)
Q Consensus 199 lLIllf~~~RllP~grks~~~ilmyG~~vg~g~~~~~yl~~~~~~iL~~~~~~e~~~~p~--------~~~vl~yv~~vG 270 (489)
..++++.+.|++|.+|.+.-+++..+.+.+++|.++.++.......+..+. ..|-++ |+|+.+.+++.|
T Consensus 173 ~~~~~~~~y~~~p~~~~~~~~~~~Ga~~~~~~~~~~~~~f~~y~~~~~~~~---~~YG~l~~li~~Llwly~~~~ill~G 249 (260)
T PF03631_consen 173 LFLLFFLLYRFLPNRRVRWRAALPGALFAAVLWFLLSYGFSLYLSYVSSYS---SVYGSLGSLIILLLWLYFSALILLLG 249 (260)
T ss_pred HHHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccc---hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999998766655555444444677777777776555444432 123332 456666666666
Q ss_pred c
Q 011285 271 A 271 (489)
Q Consensus 271 ~ 271 (489)
+
T Consensus 250 a 250 (260)
T PF03631_consen 250 A 250 (260)
T ss_pred H
Confidence 5
No 6
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=62.54 E-value=19 Score=35.86 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhcCCCCcchHHHHHHhhccchhHHHHHHHHHHHHHHHHHhccCCCCCch--------hhHHHHHHHHhh
Q 011285 198 VILMVLFQGMKLLPTGRKNSLAIFMYSSLIGLGSFLLRYLPGLLRSILTEIGIGEDMYNP--------LAIFLVAFVVLA 269 (489)
Q Consensus 198 slLIllf~~~RllP~grks~~~ilmyG~~vg~g~~~~~yl~~~~~~iL~~~~~~e~~~~p--------~~~~vl~yv~~v 269 (489)
.+.+++.++.|++|.+|...-+++..+.+.+++|.+..+.......+...|. ..|-+ +|+|+.+.+++.
T Consensus 172 ~~~l~f~~lY~~~P~~~~~~r~~~~Ga~~a~v~w~~~~~~f~~Yv~~~~~y~---~~YGslg~vi~lllWly~~~~i~l~ 248 (259)
T TIGR00765 172 FTWIFFWLLYTIVPNKKVKHRHAFVGAFFAAVLFELAKWLFTFYVSTFATYQ---LIYGALAVLPFLMLWVYLSWLVVLL 248 (259)
T ss_pred HHHHHHHHHHHhcCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566789999987655544444333344677766666555444433321 11111 255666677776
Q ss_pred hc
Q 011285 270 GA 271 (489)
Q Consensus 270 G~ 271 (489)
|+
T Consensus 249 Ga 250 (259)
T TIGR00765 249 GA 250 (259)
T ss_pred HH
Confidence 65
No 7
>PRK01637 hypothetical protein; Reviewed
Probab=59.22 E-value=21 Score=36.21 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhcCCCCcchHHHHHHhhccchhHHHHHHHHHHHHHHHHHhccCCCCCch--------hhHHHHHHHHhhh
Q 011285 199 ILMVLFQGMKLLPTGRKNSLAIFMYSSLIGLGSFLLRYLPGLLRSILTEIGIGEDMYNP--------LAIFLVAFVVLAG 270 (489)
Q Consensus 199 lLIllf~~~RllP~grks~~~ilmyG~~vg~g~~~~~yl~~~~~~iL~~~~~~e~~~~p--------~~~~vl~yv~~vG 270 (489)
+.+++..+.|++|.+|...-.++..+.+.+++|.+..++......+...|. ..|-. +|+|+.+.+++.|
T Consensus 183 ~~l~f~~lY~~~P~~k~~~r~~~~Ga~~a~~~w~~~~~~f~~Yv~~~~~y~---~~YGslg~vi~lllWlyl~~~ilL~G 259 (286)
T PRK01637 183 SWLSFWLLYSVVPNKKVPFRHALVGALVAALLFELGKKGFALYITTFPSYQ---LIYGALAVIPILFVWVYLSWCIVLLG 259 (286)
T ss_pred HHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566889999987654433333333334666666666555444332221 01111 2456666666666
Q ss_pred c
Q 011285 271 A 271 (489)
Q Consensus 271 ~ 271 (489)
+
T Consensus 260 a 260 (286)
T PRK01637 260 A 260 (286)
T ss_pred H
Confidence 5
No 8
>PF07779 Cas1_AcylT: 10 TM Acyl Transferase domain found in Cas1p; InterPro: IPR012419 The members of this family are sequences that are similar to a region of Cas1p protein (Q8X227 from SWISSPROT). This is an O-acetyltransferase that in Cryptococcus neoformans var. neoformans was shown to be required for O-acetylation of its capsular polysaccharide []. The capsule is this organism's most obvious virulence factor [].
Probab=57.65 E-value=1.2e+02 Score=33.84 Aligned_cols=115 Identities=22% Similarity=0.291 Sum_probs=63.0
Q ss_pred eechhHHHHHHHHHHHHHHHhh--hcCCCCcc----hHHHHHHhhccchhHHHHH----------HHH-------HHHHH
Q 011285 187 YGSAMAVGIILVILMVLFQGMK--LLPTGRKN----SLAIFMYSSLIGLGSFLLR----------YLP-------GLLRS 243 (489)
Q Consensus 187 YssG~slGVlaslLIllf~~~R--llP~grks----~~~ilmyG~~vg~g~~~~~----------yl~-------~~~~~ 243 (489)
+..-.+++.++.+++-.|+.=| ++||+.|. .|+++. +.++.+|.+..+ -.. |.+..
T Consensus 73 ~~~l~~~~~~g~il~y~y~cDRt~~f~k~~K~y~~~~F~~~~-~~~~~~g~~~~~~~~~~~~LnR~QTeEWKGWMQ~~~L 151 (488)
T PF07779_consen 73 REVLRALAEFGLILLYFYLCDRTNFFMKENKQYSRDSFWFLS-LYIFVLGLFSLRKSKDTKFLNRDQTEEWKGWMQLVFL 151 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccchhhccCCCHHHHHHHH-HHHHHHHHHhccccCccCCcCHHHHHHHHHHHHHHHH
Confidence 3444567777777777777765 67888776 244432 222223444322 111 11222
Q ss_pred HHHHhccCCC--CCchhhHHHHHHHHhhhcceeeEEEEEeccCCCCccccccchhhHHHHHHHHHHHHH
Q 011285 244 ILTEIGIGED--MYNPLAIFLVAFVVLAGAWLGFWVVRKLVLTEDGSIDISTSNFVAWSIRILAVIMIL 310 (489)
Q Consensus 244 iL~~~~~~e~--~~~p~~~~vl~yv~~vG~~isF~vcyrgpl~~~rSid~~t~~~v~W~Lqligl~LIy 310 (489)
+-...|-+|. .|+++.+++..|+-.+|.+ -|--.++ ++ |-+.+.+++-..|+--++...
T Consensus 152 iYHy~~As~~~~iY~~IRv~VaaYlfmTGyG-hf~yf~~---~~----Dfs~~R~~~vl~RLNfl~~~l 212 (488)
T PF07779_consen 152 IYHYTGASEVLPIYNAIRVLVAAYLFMTGYG-HFSYFWK---KG----DFSLKRFAQVLFRLNFLVVLL 212 (488)
T ss_pred HHHhhccccccchHHHHHHHHHHHHHHHhhh-heEEEEe---cC----CccHHHHHHHHHHHHHHHHHH
Confidence 2223343442 6889999999999999942 2222222 23 445556666666665444443
No 9
>PLN00010 cyclin-dependent kinases regulatory subunit; Provisional
Probab=54.82 E-value=6.9 Score=33.72 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=15.6
Q ss_pred CCCcCCCCCHHHHHHHHHH
Q 011285 423 STPERRKFSKEEWERFTRD 441 (489)
Q Consensus 423 ~~p~rR~LT~eEye~qg~~ 441 (489)
+-|+.|+|||+||+..|..
T Consensus 29 ~ipk~~LL~E~EWR~LGIq 47 (86)
T PLN00010 29 LLPKNRLLSENEWRAIGVQ 47 (86)
T ss_pred hCCcCcccCHHHHHHhccc
Confidence 3567899999999998765
No 10
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.55 E-value=16 Score=38.91 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=42.2
Q ss_pred cEEEEeCCCCCceEEEEecCCCCcCeEEEEEeeehhHHHHH-----HHHHHHHHhhhhcccCCceeeeechhHHHHHHHH
Q 011285 125 LWVQSMSPFDHKILDIRTTTSPLEPLEVSIEEEFFFYRIVF-----FILGIILMTLASSLSKSLVFYYGSAMAVGIILVI 199 (489)
Q Consensus 125 ~~~~~isPF~~~~igvr~~~~~~~~y~vsv~~~~~~~rl~~-----fv~Gi~Lf~~A~~LSrs~~FYYssG~slGVlasl 199 (489)
.+.+.+.+++++.. . ..++-|.-.-+..-..|.++. .+++|+||=+-|...|--++||+.| +.|+++.+
T Consensus 159 kk~~~l~i~~dQ~F-~----d~de~YVW~yep~~~~~~vl~~~fvl~tlaivLFPLWP~~mR~gvyY~sig-~~gfl~~I 232 (372)
T KOG2927|consen 159 KKKFELEIHDDQAF-Q----DGDEHYVWIYEPRPLMWQVLGVLFVLVTLAIVLFPLWPRRMRQGVYYLSIG-AGGFLAFI 232 (372)
T ss_pred cCccceeeccchhh-c----ccCceEEEeccCCchhHHHHHHHHHHHHHHHHhcccCcHHHhcceeeeecc-hhHHHHHH
Confidence 45566666665554 2 224556444453333333322 3457888888999999999999984 44555544
Q ss_pred HH
Q 011285 200 LM 201 (489)
Q Consensus 200 LI 201 (489)
+.
T Consensus 233 lv 234 (372)
T KOG2927|consen 233 LV 234 (372)
T ss_pred HH
Confidence 43
No 11
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=48.49 E-value=86 Score=30.41 Aligned_cols=14 Identities=14% Similarity=0.047 Sum_probs=8.5
Q ss_pred HHHHHHHHhhhcCC
Q 011285 199 ILMVLFQGMKLLPT 212 (489)
Q Consensus 199 lLIllf~~~RllP~ 212 (489)
.-++++.+.|.+++
T Consensus 123 ~G~~~~~~~~~i~~ 136 (206)
T PF06570_consen 123 GGLVFYFIFKYIYP 136 (206)
T ss_pred HHHHHHHHHHHHhc
Confidence 33455667777764
No 12
>COG4425 Predicted membrane protein [Function unknown]
Probab=46.71 E-value=4.7e+02 Score=29.48 Aligned_cols=149 Identities=16% Similarity=0.110 Sum_probs=71.1
Q ss_pred HHHHHHHHhhhhccc---CC-------ceeeeechhHHHHHHHHHHHHHHHhhhcCCC-CcchHHHHHHhhccchhHHHH
Q 011285 166 FILGIILMTLASSLS---KS-------LVFYYGSAMAVGIILVILMVLFQGMKLLPTG-RKNSLAIFMYSSLIGLGSFLL 234 (489)
Q Consensus 166 fv~Gi~Lf~~A~~LS---rs-------~~FYYssG~slGVlaslLIllf~~~RllP~g-rks~~~ilmyG~~vg~g~~~~ 234 (489)
++.|.+.|+.+-+=| |- .-|-...|-.+||.+--|..-+-.----|++ |+-...+.+.+....+++-.-
T Consensus 54 ~~~g~vff~~sLTPSLLPr~~l~qgv~sgf~~A~Gy~~gv~~~wl~~y~elp~~s~~~~R~~~~~~ai~~~~~a~~fl~q 133 (588)
T COG4425 54 LLMGTVFFWASLTPSLLPRPWLFQGVLSGFSLAAGYGAGVFLHWLWRYLELPESSPRPPRWAKPAAAIVGAAGAVGFLVQ 133 (588)
T ss_pred HHHHHHHHHHhcCccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCCCCCcchhhhHHHHHHHHHHHHHHHH
Confidence 677888887764322 21 1233355555666554443222111111121 222233344443322333333
Q ss_pred HHHHHHHHHHHHHhccCCCCCchhh--HHHHHHHHhhhcceeeEEEEEeccCCCCccccccchhhHHHHHHHHHHHHHhh
Q 011285 235 RYLPGLLRSILTEIGIGEDMYNPLA--IFLVAFVVLAGAWLGFWVVRKLVLTEDGSIDISTSNFVAWSIRILAVIMILQS 312 (489)
Q Consensus 235 ~yl~~~~~~iL~~~~~~e~~~~p~~--~~vl~yv~~vG~~isF~vcyrgpl~~~rSid~~t~~~v~W~Lqligl~LIy~s 312 (489)
--.|+|-...|+.+..-|-.+.+-+ +-+++|..+++ +.++.+|+++.+..-.=++-
T Consensus 134 a~~wqntvr~Lmgl~~~~sa~p~k~g~la~l~~~~Lv~----------------------~grlfql~~rf~~~~v~rfl 191 (588)
T COG4425 134 AAVWQNTVRDLMGLEPLESAEPPKAGLLALLVFAALVE----------------------LGRLFQLTFRFLSGRVDRFL 191 (588)
T ss_pred HHHHhHHHHHHhCCCCCCcccchhHhHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHhhc
Confidence 3466776666666554444333311 11223333332 34689999999988877776
Q ss_pred ccchHhHHHHHHHHHHHHHHHhhh
Q 011285 313 SLDPLLAAEALVSGVLVSSILRNF 336 (489)
Q Consensus 313 s~~~~~a~~Ali~~~l~~~~~~~~ 336 (489)
-.-...+.+.+++..+.+.++...
T Consensus 192 Prrvsn~~gv~v~v~ltwtl~ngV 215 (588)
T COG4425 192 PRRVSNALGVVVAVVLTWTLLNGV 215 (588)
T ss_pred cHhHHHHHHHHHHHHHHHHHhhhH
Confidence 555555553333333444444433
No 13
>PRK12302 bssR biofilm formation regulatory protein BssR; Reviewed
Probab=45.49 E-value=23 Score=31.92 Aligned_cols=42 Identities=19% Similarity=0.431 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh---cCCCCCcchhcccccee
Q 011285 427 RRKFSKEEWERFTRDSTERALEGLV---SSPDFSKWVAANAERIT 468 (489)
Q Consensus 427 rR~LT~eEye~qg~~eT~kAL~EL~---~SPef~~W~~~na~Ri~ 468 (489)
.-.+.+|||+..-+.|-.-|-+..| -.-||+...++||+++.
T Consensus 61 ~~h~d~eE~~aL~~A~~aLa~AaVCLMsGhHDCPtfiaVna~KLe 105 (127)
T PRK12302 61 NLHLDQEEWSALRHAEEALATAAVCLMSGHHDCPTFIAVNADKLE 105 (127)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeecHHHHH
Confidence 4468999999876655444444444 78899999999998863
No 14
>PTZ00453 cyclin-dependent kinase; Provisional
Probab=44.98 E-value=14 Score=32.54 Aligned_cols=18 Identities=28% Similarity=0.650 Sum_probs=15.2
Q ss_pred CCcCCCCCHHHHHHHHHH
Q 011285 424 TPERRKFSKEEWERFTRD 441 (489)
Q Consensus 424 ~p~rR~LT~eEye~qg~~ 441 (489)
-|+.|+|||+||+..|..
T Consensus 54 ipk~~LL~E~EWR~LGIq 71 (96)
T PTZ00453 54 VPRSRLMSESEWRQLGVQ 71 (96)
T ss_pred CCCCccccHHHHHHhhhc
Confidence 567899999999998864
No 15
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=42.99 E-value=31 Score=24.11 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=19.8
Q ss_pred echhHHHHHHHHHHHHHHHhhhcC
Q 011285 188 GSAMAVGIILVILMVLFQGMKLLP 211 (489)
Q Consensus 188 ssG~slGVlaslLIllf~~~RllP 211 (489)
+.|+..|++++++++.|++..++-
T Consensus 2 s~~vi~g~llv~lLl~YLvYAL~n 25 (29)
T PRK14750 2 NFSIVCGALLVLLLLGYLVYALFN 25 (29)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcC
Confidence 457888999999999999888774
No 16
>COG5548 Small integral membrane protein [Function unknown]
Probab=42.80 E-value=44 Score=29.56 Aligned_cols=56 Identities=9% Similarity=0.210 Sum_probs=46.2
Q ss_pred HHHHHHHHhhhhcccCCceeeeechhHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhh
Q 011285 166 FILGIILMTLASSLSKSLVFYYGSAMAVGIILVILMVLFQGMKLLPTGRKNSLAIFMYSS 225 (489)
Q Consensus 166 fv~Gi~Lf~~A~~LSrs~~FYYssG~slGVlaslLIllf~~~RllP~grks~~~ilmyG~ 225 (489)
.+.|.++|+.|.-+-++. +-|..+-..+|.+++.+.+-|++|.||-.+..+...|.
T Consensus 35 ~~~G~~~~~A~yL~~~g~----~~Gl~~A~~~s~~Ll~~~~~R~~~sRKpvP~~Lt~lgg 90 (105)
T COG5548 35 VFSGLLLFVAAYLQLQGQ----TWGLILATVVSAALLVFFALRLVRSRKPVPAGLTTLGG 90 (105)
T ss_pred HHHhHHHHHHHHHHHcCc----ccCeehHHHHHHHHHHhcchhccccCCCcchHHHHHhh
Confidence 677888999888888877 56888888889999999999999998766777766663
No 17
>PF01111 CKS: Cyclin-dependent kinase regulatory subunit; InterPro: IPR000789 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In eukaryotes, cyclin-dependent protein kinases interact with cyclins to regulate cell cycle progression, and are required for the G1 and G2 stages of cell division []. The proteins bind to a regulatory subunit, cyclin-dependent kinase regulatory subunit (CKS), which is essential for their function. This regulatory subunit is a small protein of 79 to 150 residues. In yeast (gene CKS1) and in fission yeast (gene suc1) a single isoform is known, while mammals have two highly related isoforms. The regulatory subunits exist as hexamers, formed by the symmetrical assembly of 3 interlocked homodimers, creating an unusual 12-stranded beta-barrel structure []. Through the barrel centre runs a 12A diameter tunnel, lined by 6 exposed helix pairs []. Six kinase units can be modelled to bind the hexameric structure, which may thus act as a hub for cyclin-dependent protein kinase multimerisation [, ].; GO: 0016538 cyclin-dependent protein kinase regulator activity, 0007049 cell cycle; PDB: 1CKS_C 3QY2_B 1QB3_C 1SCE_B 1PUC_A 1DKS_B 2AST_C 1BUH_B 1DKT_B 2ASS_C.
Probab=40.83 E-value=13 Score=31.03 Aligned_cols=17 Identities=35% Similarity=0.702 Sum_probs=10.3
Q ss_pred CCcCCCCCHHHHHHHHH
Q 011285 424 TPERRKFSKEEWERFTR 440 (489)
Q Consensus 424 ~p~rR~LT~eEye~qg~ 440 (489)
-|+-|+|||+||+..|.
T Consensus 28 vp~~~llsE~EWR~LGI 44 (70)
T PF01111_consen 28 VPKDRLLSEEEWRGLGI 44 (70)
T ss_dssp S-CCS---HHHHHHTT-
T ss_pred CccCcccCHHHHHhhCC
Confidence 45669999999999874
No 18
>KOG3484 consensus Cyclin-dependent protein kinase CDC28, regulatory subunit CKS1, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=40.68 E-value=14 Score=31.81 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=14.5
Q ss_pred CCcCCCCCHHHHHHHHH
Q 011285 424 TPERRKFSKEEWERFTR 440 (489)
Q Consensus 424 ~p~rR~LT~eEye~qg~ 440 (489)
-|+-|+|||+||+..|-
T Consensus 32 vPk~rllsE~EWR~lGv 48 (91)
T KOG3484|consen 32 VPKNRLLSETEWRGLGV 48 (91)
T ss_pred CCccccccHHHHhhhCc
Confidence 56789999999998774
No 19
>PRK08382 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=40.09 E-value=1.6e+02 Score=29.06 Aligned_cols=62 Identities=8% Similarity=0.047 Sum_probs=35.4
Q ss_pred CcCeEEEEEeeehhHHHHH-HHHHHHHHhhhhcccCCceeeeechhHHHHHHHHHHHHHHHhhhcCCCC
Q 011285 147 LEPLEVSIEEEFFFYRIVF-FILGIILMTLASSLSKSLVFYYGSAMAVGIILVILMVLFQGMKLLPTGR 214 (489)
Q Consensus 147 ~~~y~vsv~~~~~~~rl~~-fv~Gi~Lf~~A~~LSrs~~FYYssG~slGVlaslLIllf~~~RllP~gr 214 (489)
...|+..=..+...|+-+. +.+-++++|+ .|+.+ |-.....+|++.++++. ++..+++|.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~llLf~~Wl--lLsg~---~s~~~l~lG~i~~~~v~-~l~~~~~~~~~ 80 (201)
T PRK08382 18 RVLYEIYEAQKLPPWERFVLTWLILLAFWV--IISGD---LSPRGLILGALTTLIIA-SYMRDFLTEDI 80 (201)
T ss_pred ccceeecccccCCcchHHHHHHHHHHHHHH--HHhCC---cCHHHHHHHHHHHHHHH-HHHHhhccccc
Confidence 4556665555566555443 3233444443 34444 34566788887776555 67788887543
No 20
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.50 E-value=65 Score=34.56 Aligned_cols=16 Identities=31% Similarity=0.997 Sum_probs=12.0
Q ss_pred HHHHHHHhhhcceeeEE
Q 011285 261 FLVAFVVLAGAWLGFWV 277 (489)
Q Consensus 261 ~vl~yv~~vG~~isF~v 277 (489)
|++.|+++-|- -+||+
T Consensus 243 F~I~~il~~g~-~g~W~ 258 (372)
T KOG2927|consen 243 FGITWILTGGK-HGFWL 258 (372)
T ss_pred HHHHHHHhCCC-CceEe
Confidence 67778888764 77887
No 21
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.04 E-value=19 Score=32.88 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=21.1
Q ss_pred hcccCCceeeeechhHHHHHHHHHHHHHHHhhhcC
Q 011285 177 SSLSKSLVFYYGSAMAVGIILVILMVLFQGMKLLP 211 (489)
Q Consensus 177 ~~LSrs~~FYYssG~slGVlaslLIllf~~~RllP 211 (489)
+.+|......-..|...||++.+|++.|.+.|+.=
T Consensus 59 h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 59 HRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp SSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred cCccccceeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444433446777777777777777777653
No 22
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=35.66 E-value=12 Score=30.63 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=0.5
Q ss_pred echhHHHHHHHHHHHHHHHhhhcCC
Q 011285 188 GSAMAVGIILVILMVLFQGMKLLPT 212 (489)
Q Consensus 188 ssG~slGVlaslLIllf~~~RllP~ 212 (489)
.+|+++|++..+++++|++.|+--|
T Consensus 15 IaG~Vvgll~ailLIlf~iyR~rkk 39 (64)
T PF01034_consen 15 IAGGVVGLLFAILLILFLIYRMRKK 39 (64)
T ss_dssp ----------------------S--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677888999999999999998543
No 23
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=35.48 E-value=54 Score=31.67 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHhhhhcccCCceeeee
Q 011285 160 FYRIVFFILGIILMTLASSLSKSLVFYYG 188 (489)
Q Consensus 160 ~~rl~~fv~Gi~Lf~~A~~LSrs~~FYYs 188 (489)
.|+... .+|+.||+..=.+--+.-||++
T Consensus 109 ~W~~s~-~lGi~lFL~~l~l~~WIKF~~~ 136 (175)
T PF07856_consen 109 AWRFST-VLGIPLFLAELALLGWIKFWDS 136 (175)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHheeehhc
Confidence 355444 4499999999999999999999
No 24
>TIGR02413 Bac_small_yrzI Bacillus tandem small hypothetical proetin. Members of this family are very small proteins, about 47 residues each, in the genus Bacillus. Single members are found in Bacillus subtilis and Bacillus halodurans, but arrays of six in tandem in Bacillus cereus and Bacillus anthracis. An EIxxE motif present in most members of this family resembles cleavage sites by the germination protease GPR in a number small, acid-soluble spore proteins (SASP). A role in sporulation is possible.
Probab=34.99 E-value=25 Score=27.11 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.7
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 011285 424 TPERRKFSKEEWERFTRDSTERALEGLV 451 (489)
Q Consensus 424 ~p~rR~LT~eEye~qg~~eT~kAL~EL~ 451 (489)
|-.+|++|++|.+. ++.-+++.+|.+
T Consensus 11 TIqKr~~S~~Ei~~--eqq~k~~~deik 36 (46)
T TIGR02413 11 TIQKRKLSEAEIER--EQQIEKIMDEVK 36 (46)
T ss_pred EEEeccCCHHHHHH--HHHHHHHHHHHH
Confidence 66899999999998 788889999985
No 25
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=31.04 E-value=1.9e+02 Score=28.77 Aligned_cols=42 Identities=10% Similarity=0.142 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhcCCCCcchHHHHHHhhccchhHHHHHHHHHH
Q 011285 199 ILMVLFQGMKLLPTGRKNSLAIFMYSSLIGLGSFLLRYLPGL 240 (489)
Q Consensus 199 lLIllf~~~RllP~grks~~~ilmyG~~vg~g~~~~~yl~~~ 240 (489)
..+++..+.+++|.+|...-.++..+.+.+++|.+.++....
T Consensus 178 ~~~~~~~ly~~lP~~k~~~~~~l~Ga~~aa~~~~~~~~~fs~ 219 (263)
T TIGR00766 178 SVLVSWVLFTWMPREPVRLVTLARGTLMAAIGFELFKQVMTI 219 (263)
T ss_pred HHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445667899986544444444443344677666654443
No 26
>PF09501 Bac_small_YrzI: Probable sporulation protein (Bac_small_yrzI); InterPro: IPR012655 Members of this family are very small proteins, about 47 residues each, in the genus Bacillus. Single members are found in Bacillus subtilis and Bacillus halodurans, while arrays of six members in tandem are found in Bacillus cereus and Bacillus anthracis. An EIxxE motif present in most members of this family resembles cleavage sites by the germination protease GPR in a number of small acid-soluble spore proteins (SASP). A role in sporulation is possible.
Probab=30.91 E-value=51 Score=25.35 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=21.9
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHHHHHhh
Q 011285 424 TPERRKFSKEEWERFTRDSTERALEGLV 451 (489)
Q Consensus 424 ~p~rR~LT~eEye~qg~~eT~kAL~EL~ 451 (489)
|-.+|++|+||.+. ++.-+++.+|.+
T Consensus 11 TIqKr~~S~~Ei~~--~qq~~~~~deik 36 (46)
T PF09501_consen 11 TIQKRKYSEEEILH--EQQIKKIMDEIK 36 (46)
T ss_pred EEEeccCCHHHHHH--HHHHHHHHHHHH
Confidence 66789999999998 777788888875
No 27
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=30.75 E-value=54 Score=33.09 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=18.7
Q ss_pred eeeeechhHHHHHHHHHHHHHHHhhhcC
Q 011285 184 VFYYGSAMAVGIILVILMVLFQGMKLLP 211 (489)
Q Consensus 184 ~FYYssG~slGVlaslLIllf~~~RllP 211 (489)
.+|++.|..++|++-+.++..+++-++|
T Consensus 149 ~~~~gi~aml~Vf~LF~lvmt~g~d~m~ 176 (230)
T PF03904_consen 149 SMYKGIGAMLFVFMLFALVMTIGSDFMD 176 (230)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcccchh
Confidence 3455666677777777777777665555
No 28
>PF10799 YliH: Biofilm formation protein (YliH/bssR); InterPro: IPR020359 This entry represents Biofilm regulator, BssR (from the gene also known as yliH). It represses Escherichia coli biofilm formation in M9C glu and LB glu media but not in M9C and LB media. It may act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signalling pathways. It could also be involved the regulation of indole as well as uptake and export of AI-2 through a cAMP-dependent pathway [].
Probab=28.65 E-value=61 Score=29.56 Aligned_cols=42 Identities=26% Similarity=0.499 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh---cCCCCCcchhcccccee
Q 011285 427 RRKFSKEEWERFTRDSTERALEGLV---SSPDFSKWVAANAERIT 468 (489)
Q Consensus 427 rR~LT~eEye~qg~~eT~kAL~EL~---~SPef~~W~~~na~Ri~ 468 (489)
.--+.+|||+..-..+-.-|-+..| -.-||+...+|||+++.
T Consensus 61 ~~~l~~eE~~aL~~a~~a~a~AaVCLMsGhHDCP~~IaVnaekLe 105 (127)
T PF10799_consen 61 KLHLDPEEWEALRRAGEALASAAVCLMSGHHDCPTYIAVNAEKLE 105 (127)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeecHHHHH
Confidence 4468999999876555544444444 78899999999998763
No 29
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=27.32 E-value=77 Score=22.23 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=19.0
Q ss_pred echhHHHHHHHHHHHHHHHhhhc
Q 011285 188 GSAMAVGIILVILMVLFQGMKLL 210 (489)
Q Consensus 188 ssG~slGVlaslLIllf~~~Rll 210 (489)
+.|...|+++.++++.|++.-++
T Consensus 2 s~~vi~G~ilv~lLlgYLvyALi 24 (29)
T PRK14748 2 SAGVITGVLLVFLLLGYLVYALI 24 (29)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788899999999999887665
No 30
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=27.31 E-value=98 Score=23.88 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCc
Q 011285 433 EEWERFTRDSTERALEGLVSSPDFSK 458 (489)
Q Consensus 433 eEye~qg~~eT~kAL~EL~~SPef~~ 458 (489)
++|=+...+|=-+-|+|||..|||++
T Consensus 4 ~~yl~~~t~efgdDLd~lR~~~dF~~ 29 (47)
T PF14615_consen 4 NFYLQRLTDEFGDDLDELRKAPDFTD 29 (47)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 57777777888888999999999965
No 31
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=25.57 E-value=49 Score=24.12 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=16.8
Q ss_pred eechhHHHHHHHHHHHHHHHh
Q 011285 187 YGSAMAVGIILVILMVLFQGM 207 (489)
Q Consensus 187 YssG~slGVlaslLIllf~~~ 207 (489)
|.-...+|+++.++|++|-.-
T Consensus 8 ~~lan~lG~~~~~LIVlYH~v 28 (35)
T PF10215_consen 8 YTLANFLGVAAMVLIVLYHFV 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999998654
No 32
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=23.56 E-value=76 Score=25.36 Aligned_cols=32 Identities=34% Similarity=0.618 Sum_probs=18.6
Q ss_pred CcCCCCCHHHHHHH-------HH--HHHHHHHHH----hhcCCCC
Q 011285 425 PERRKFSKEEWERF-------TR--DSTERALEG----LVSSPDF 456 (489)
Q Consensus 425 p~rR~LT~eEye~q-------g~--~eT~kAL~E----L~~SPef 456 (489)
.-||.+|++|-+.. -+ ...+.|+++ +-.||+|
T Consensus 14 AfRRp~~~~e~~~~~~~~~~~~~~g~~~~~a~~~~l~aiL~SP~F 58 (64)
T PF07637_consen 14 AFRRPLTDEEVDRYLALYDSARAQGEDFEEALKEALQAILCSPSF 58 (64)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCcch
Confidence 35899999994432 11 123344443 3499987
No 33
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=23.38 E-value=1.9e+02 Score=30.67 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=24.5
Q ss_pred CCceeeeechhHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHh
Q 011285 181 KSLVFYYGSAMAVGIILVILMVLFQGMKLLPTGRKNSLAIFMYS 224 (489)
Q Consensus 181 rs~~FYYssG~slGVlaslLIllf~~~RllP~grks~~~ilmyG 224 (489)
.+..+.+..++.++++..+++++.+..+.+|+ ++.-+..+++
T Consensus 423 ~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~--~T~~G~~~~~ 464 (511)
T PF09972_consen 423 NSLIFIALGILSIVLIIIGIIALIIFYKVMPR--RTPEGAELYA 464 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHH
Confidence 33444455555555555556666666788885 4555555554
No 34
>COG2510 Predicted membrane protein [Function unknown]
Probab=22.30 E-value=3.8e+02 Score=25.29 Aligned_cols=88 Identities=20% Similarity=0.198 Sum_probs=46.9
Q ss_pred CceeeeechhHHHHHHHHHHHHHHHhhhcC--CCCcchHHHHHHhhccchhHHHHHHHHHH---------------HHHH
Q 011285 182 SLVFYYGSAMAVGIILVILMVLFQGMKLLP--TGRKNSLAIFMYSSLIGLGSFLLRYLPGL---------------LRSI 244 (489)
Q Consensus 182 s~~FYYssG~slGVlaslLIllf~~~RllP--~grks~~~ilmyG~~vg~g~~~~~yl~~~---------------~~~i 244 (489)
++.|=-..=..+++.+.++++++....-.| -++|+..++.+-|...|+||.+-.+..++ +.-.
T Consensus 30 dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~l 109 (140)
T COG2510 30 DPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVL 109 (140)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHH
Confidence 444433333444444545555555544455 25688888888786667788765554433 2223
Q ss_pred HHHhccCCCCCchhhHHHHHHHHhhhc
Q 011285 245 LTEIGIGEDMYNPLAIFLVAFVVLAGA 271 (489)
Q Consensus 245 L~~~~~~e~~~~p~~~~vl~yv~~vG~ 271 (489)
|-.+-+.|+|--|-| +..-+++.|+
T Consensus 110 ls~lfL~E~ls~~~~--iG~~LI~~Ga 134 (140)
T COG2510 110 LSILFLGERLSLPTW--IGIVLIVIGA 134 (140)
T ss_pred HHHHHhcCCCCHHHH--HHHHHHHhCe
Confidence 344445677665533 3334445554
No 35
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.75 E-value=49 Score=30.27 Aligned_cols=22 Identities=5% Similarity=0.156 Sum_probs=10.9
Q ss_pred chhHHHHHHHHHHHHHHHhhhc
Q 011285 189 SAMAVGIILVILMVLFQGMKLL 210 (489)
Q Consensus 189 sG~slGVlaslLIllf~~~Rll 210 (489)
.||.+||.|.++.+++++.=++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444444444
No 36
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=21.65 E-value=7.7e+02 Score=26.53 Aligned_cols=56 Identities=25% Similarity=0.369 Sum_probs=30.5
Q ss_pred ceeeeechhHHHHH--HHHHHHHHHHhhhcCCCCcchHHHHHHhhccchhHHHHHHHHH
Q 011285 183 LVFYYGSAMAVGII--LVILMVLFQGMKLLPTGRKNSLAIFMYSSLIGLGSFLLRYLPG 239 (489)
Q Consensus 183 ~~FYYssG~slGVl--aslLIllf~~~RllP~grks~~~ilmyG~~vg~g~~~~~yl~~ 239 (489)
..|........|+. +..+....+++++.|++...+.+.++.+. .++|..+...+-+
T Consensus 351 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~-~~lg~~v~~~~gg 408 (468)
T TIGR00788 351 EVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASI-LHLGSSVSGFLGV 408 (468)
T ss_pred eeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHH-HHHHHHHHHHHHH
Confidence 34445544444444 34445577788999988777766544332 2344444433333
No 37
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=21.43 E-value=94 Score=31.01 Aligned_cols=20 Identities=15% Similarity=0.557 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHhhcc
Q 011285 295 NFVAWSIRILAVIMILQSSL 314 (489)
Q Consensus 295 ~~v~W~Lqligl~LIy~ss~ 314 (489)
++.+|.+|++|.+|++.|..
T Consensus 180 ~~~tW~lR~~G~llmf~G~~ 199 (248)
T PF07787_consen 180 NTLTWILRFIGWLLMFIGFF 199 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999843
No 38
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=20.78 E-value=99 Score=31.19 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=34.4
Q ss_pred eehhHHHHHHHHHHHHHhhhhcccCCceeeeechhHHHHHHHHHHHHHHHhhhcC
Q 011285 157 EFFFYRIVFFILGIILMTLASSLSKSLVFYYGSAMAVGIILVILMVLFQGMKLLP 211 (489)
Q Consensus 157 ~~~~~rl~~fv~Gi~Lf~~A~~LSrs~~FYYssG~slGVlaslLIllf~~~RllP 211 (489)
.+-++.+..|++.+++|+.-..+-.+..|+ +.+|+++.+|+.+++++|..-
T Consensus 26 ~l~~~ml~a~l~~~~v~v~ig~l~~~~~~~----~i~gi~~g~l~am~vl~rra~ 76 (224)
T PF13829_consen 26 KLPWLMLGAFLGPIAVFVLIGLLFGSWWYW----LIIGILLGLLAAMIVLSRRAQ 76 (224)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHccHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666888888888888777755544 556666666666666777766
No 39
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.73 E-value=93 Score=33.69 Aligned_cols=55 Identities=15% Similarity=0.130 Sum_probs=35.7
Q ss_pred echhHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhhccchhHHHHHHHHHHHHHHHHHhc
Q 011285 188 GSAMAVGIILVILMVLFQGMKLLPTGRKNSLAIFMYSSLIGLGSFLLRYLPGLLRSILTEIG 249 (489)
Q Consensus 188 ssG~slGVlaslLIllf~~~RllP~grks~~~ilmyG~~vg~g~~~~~yl~~~~~~iL~~~~ 249 (489)
+.|+....+.++.|+-=++=|--|.=. +|.|. |.+|.|+++++++|++.|+.+|+
T Consensus 169 v~GilaSLl~Viflv~rf~PKkt~~~~------iliGg-Ws~slY~i~ql~~nLq~Iwieyr 223 (452)
T KOG3817|consen 169 VIGILASLLVVIFLVARFFPKKTMMYG------ILIGG-WSISLYVIKQLADNLQLIWIEYR 223 (452)
T ss_pred HHHHHHHHHHHHHHHHHhcccccceEE------EEEcc-chhHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666656555444 44443 55688888888888888877654
No 40
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=20.15 E-value=1e+02 Score=29.06 Aligned_cols=53 Identities=19% Similarity=0.369 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhhc-ccC----------CceeeeechhHHHHHHHHHHHHHHHhhhc---CCCCcc
Q 011285 164 VFFILGIILMTLASS-LSK----------SLVFYYGSAMAVGIILVILMVLFQGMKLL---PTGRKN 216 (489)
Q Consensus 164 ~~fv~Gi~Lf~~A~~-LSr----------s~~FYYssG~slGVlaslLIllf~~~Rll---P~grks 216 (489)
.....|+++++.+++ ++| +..+=+.+|+.-+-++..+++.|+++=.+ |.+++|
T Consensus 58 ~~~T~G~~~~lm~~kgi~rm~lG~~vm~~~~~llw~ggv~~~~IAg~~lv~filmvVLiPEpg~QRS 124 (144)
T PF01350_consen 58 GVMTLGVFWFLMRRKGIGRMSLGMLVMAVAGYLLWMGGVPPGQIAGVLLVFFILMVVLIPEPGKQRS 124 (144)
T ss_pred HHHHHHHHHhhhcCCCcchhhHHHHHHHHHHHHHHhcCCcHHHhHHHHHHHHHHHHhcccCCCCcCC
Confidence 335568888887774 333 23344566777777777777777766655 555554
Done!