Query 011285
Match_columns 489
No_of_seqs 138 out of 152
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 04:59:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011285.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011285hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cksa_ d.97.1.1 (A:) CksHs2 { 50.3 3.4 0.00025 31.6 1.9 17 424-440 31-47 (74)
2 d1puca_ d.97.1.1 (A:) suc1 {Fi 22.8 16 0.0011 29.3 1.7 16 424-439 59-74 (101)
3 d2p12a1 b.175.1.1 (A:8-172) Hy 21.6 21 0.0015 30.8 2.4 36 426-462 121-157 (165)
4 d1qb3a_ d.97.1.1 (A:) cks1 {Ba 21.4 17 0.0013 29.6 1.7 16 424-439 58-73 (113)
5 d1pv7a_ f.38.1.2 (A:) Lactose 18.6 40 0.0029 28.7 3.7 64 179-242 308-373 (417)
6 d1otsa_ f.20.1.1 (A:) Clc chlo 14.6 1.7E+02 0.013 27.4 7.7 24 221-244 24-47 (444)
7 d1m1la_ d.260.1.1 (A:) Suppres 11.4 42 0.0031 30.2 1.8 42 429-470 176-218 (236)
8 d1em2a_ d.129.3.2 (A:) Lipid t 10.9 57 0.0042 27.1 2.4 27 432-461 6-32 (214)
9 d2ar1a1 b.122.1.8 (A:7-163) Hy 10.8 30 0.0022 29.3 0.5 26 447-472 115-140 (157)
10 d1zcea1 b.122.1.8 (A:2-147) Hy 10.5 30 0.0022 29.0 0.3 26 446-471 98-123 (146)
No 1
>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.28 E-value=3.4 Score=31.63 Aligned_cols=17 Identities=35% Similarity=0.735 Sum_probs=14.2
Q ss_pred CCcCCCCCHHHHHHHHH
Q 011285 424 TPERRKFSKEEWERFTR 440 (489)
Q Consensus 424 ~p~rR~LT~eEye~qg~ 440 (489)
-|+.++|||+||+..|.
T Consensus 31 ~pk~~LlsE~EWR~LGI 47 (74)
T d1cksa_ 31 VPKTHLMSEEEWRRLGV 47 (74)
T ss_dssp SCSSSCCCHHHHHHHTC
T ss_pred CCCccccCHHHHHHhCc
Confidence 56789999999998763
No 2
>d1puca_ d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=22.84 E-value=16 Score=29.30 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.2
Q ss_pred CCcCCCCCHHHHHHHH
Q 011285 424 TPERRKFSKEEWERFT 439 (489)
Q Consensus 424 ~p~rR~LT~eEye~qg 439 (489)
+-..|+|||+||+..|
T Consensus 59 ~g~~rLLtE~EWR~LG 74 (101)
T d1puca_ 59 TGTLRILQEEEWRGLG 74 (101)
T ss_dssp TSSBCCCCHHHHHHTT
T ss_pred ccccccCCHHHHHHhc
Confidence 4467999999999865
No 3
>d2p12a1 b.175.1.1 (A:8-172) Hypothetical protein RHA1_ro00977 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=21.59 E-value=21 Score=30.83 Aligned_cols=36 Identities=17% Similarity=0.396 Sum_probs=28.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhcCC-CCCcchhc
Q 011285 426 ERRKFSKEEWERFTRDSTERALEGLVSSP-DFSKWVAA 462 (489)
Q Consensus 426 ~rR~LT~eEye~qg~~eT~kAL~EL~~SP-ef~~W~~~ 462 (489)
+..++|+||+++ +.+.+..|++++.++- |-.+|++.
T Consensus 121 ~~GlIs~e~ae~-Al~ta~~~ve~i~r~g~d~~~WLa~ 157 (165)
T d2p12a1 121 TTGLLDTATAEQ-AILTATTAIDGIAAHGHDLGRWLAS 157 (165)
T ss_dssp HTTSSCHHHHHH-HHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HcCCCCHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 456788888875 6778889999997543 77899986
No 4
>d1qb3a_ d.97.1.1 (A:) cks1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.38 E-value=17 Score=29.57 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=13.1
Q ss_pred CCcCCCCCHHHHHHHH
Q 011285 424 TPERRKFSKEEWERFT 439 (489)
Q Consensus 424 ~p~rR~LT~eEye~qg 439 (489)
+-..|+|||+||+..|
T Consensus 58 ~g~~rLLtE~EWR~LG 73 (113)
T d1qb3a_ 58 VGTLRILTEDEWRGLG 73 (113)
T ss_dssp TSSBCCCCHHHHHHTT
T ss_pred ccccccCCHHHHHHhC
Confidence 4467999999999865
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=18.62 E-value=40 Score=28.72 Aligned_cols=64 Identities=8% Similarity=-0.025 Sum_probs=30.7
Q ss_pred ccCCceeeeechhHHHHHHHHH--HHHHHHhhhcCCCCcchHHHHHHhhccchhHHHHHHHHHHHH
Q 011285 179 LSKSLVFYYGSAMAVGIILVIL--MVLFQGMKLLPTGRKNSLAIFMYSSLIGLGSFLLRYLPGLLR 242 (489)
Q Consensus 179 LSrs~~FYYssG~slGVlaslL--Illf~~~RllP~grks~~~ilmyG~~vg~g~~~~~yl~~~~~ 242 (489)
+..+....+...+..|+...+. ...-+..+..|++.+.+...+.+....++|..+.-.+.+.+.
T Consensus 308 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~ 373 (417)
T d1pv7a_ 308 FATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554555555555544333 334456889997544443323333222344444445555443
No 6
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=14.57 E-value=1.7e+02 Score=27.40 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=12.6
Q ss_pred HHHhhccchhHHHHHHHHHHHHHH
Q 011285 221 FMYSSLIGLGSFLLRYLPGLLRSI 244 (489)
Q Consensus 221 lmyG~~vg~g~~~~~yl~~~~~~i 244 (489)
.+.|.+.|+...++++..+.+...
T Consensus 24 ~liGi~~gl~~~~~~~~i~~~~~~ 47 (444)
T d1otsa_ 24 AVVGTLVGLAAVAFDKGVAWLQNQ 47 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554443
No 7
>d1m1la_ d.260.1.1 (A:) Suppressor of Fused, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.44 E-value=42 Score=30.15 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCC-CCCcchhccccceeec
Q 011285 429 KFSKEEWERFTRDSTERALEGLVSSP-DFSKWVAANAERITVT 470 (489)
Q Consensus 429 ~LT~eEye~qg~~eT~kAL~EL~~SP-ef~~W~~~na~Ri~~~ 470 (489)
-+|+||.+..-+.-+++-|+.|++.+ +-++|.+++-+|=++.
T Consensus 176 giT~eELe~~~~~~~~~llelL~~~~~~~np~lITD~~R~s~i 218 (236)
T d1m1la_ 176 GVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGETI 218 (236)
T ss_dssp EECHHHHHHHHHSCHHHHHHHHHHSGGGTTTTTCBCTTCCSCH
T ss_pred cCCHHHHHHHHHhChHHHHHHHHHhhccCCCceeecCCchhhh
Confidence 48999999865555666566666444 6789999988886643
No 8
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.87 E-value=57 Score=27.06 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchh
Q 011285 432 KEEWERFTRDSTERALEGLVSSPDFSKWVA 461 (489)
Q Consensus 432 ~eEye~qg~~eT~kAL~EL~~SPef~~W~~ 461 (489)
|+||.+|+++....|.+-|... +.|+.
T Consensus 6 ~~~y~~~~~e~~~~~~~il~~~---~~W~~ 32 (214)
T d1em2a_ 6 EREYIRQGKEATAVVDQILAQE---ENWKF 32 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTG---GGCEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCC---CCCeE
Confidence 7899999987777766666433 35865
No 9
>d2ar1a1 b.122.1.8 (A:7-163) Hypothetical protein LmjF36.6870 {Leishmania major [TaxId: 5664]}
Probab=10.78 E-value=30 Score=29.35 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.3
Q ss_pred HHHhhcCCCCCcchhccccceeecCC
Q 011285 447 LEGLVSSPDFSKWVAANAERITVTPR 472 (489)
Q Consensus 447 L~EL~~SPef~~W~~~na~Ri~~~p~ 472 (489)
|+||++.|++..+.++.-.||+|.|-
T Consensus 115 L~eLK~~~~L~~m~Llr~~RLSV~PV 140 (157)
T d2ar1a1 115 LHELKSRRELQKMALFTQRRLSVQPV 140 (157)
T ss_dssp HHHHTTCGGGTTCHHHHCSSCSEEEE
T ss_pred HHHHhcCcccccCcEeecCccceeec
Confidence 67888899999999999999999983
No 10
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=10.49 E-value=30 Score=29.04 Aligned_cols=26 Identities=23% Similarity=0.495 Sum_probs=23.0
Q ss_pred HHHHhhcCCCCCcchhccccceeecC
Q 011285 446 ALEGLVSSPDFSKWVAANAERITVTP 471 (489)
Q Consensus 446 AL~EL~~SPef~~W~~~na~Ri~~~p 471 (489)
.|+||++.|++..+..+.-.||+|.|
T Consensus 98 sL~eLK~~~~L~~m~Lvk~~RLSV~P 123 (146)
T d1zcea1 98 SLKDVKANPKLEKMSLVTSMRLSVQP 123 (146)
T ss_dssp EHHHHHHCGGGTTCHHHHCSSCSEEE
T ss_pred eHHHhhcCcchhhCcchhcCccCeEe
Confidence 36788888999999999999999998
Done!