BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011286
(489 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 118/202 (58%), Gaps = 20/202 (9%)
Query: 209 HPAT---FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLI 265
HP + ++ ++ ++KKMI DD+ FL+ ++Y G ++RGYLLYGPPG+GK+S +
Sbjct: 200 HPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFL 259
Query: 266 AAMANYLNFDVYDLELSSVEGNKD-LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAA 324
A+A L++D+ L L+ D L +L K+++++ED+D + ++R +
Sbjct: 260 YALAGELDYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVLLEDVDSAFQGRERSGEV--- 316
Query: 325 IPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMD 384
G VT SGLLN +DG+ SS DERII TTNH ++LDPAL+RPGR+D
Sbjct: 317 -----------GFHANVTFSGLLNALDGVTSS--DERIIFMTTNHPEKLDPALVRPGRVD 363
Query: 385 VHIHMSYCTPCGFKMLASNYLG 406
V ++ TP + + + + G
Sbjct: 364 VKAYLGNATPEQVREMFTRFYG 385
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 148/291 (50%), Gaps = 35/291 (12%)
Query: 167 RTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLD-----HPA---TFDTLAM 218
R ++++++KE++ +K+ G T I+ S+ D HP ++ +
Sbjct: 162 RQVFQNLIEEAKEMALEKE----------EGKTLIYTSMGTDWRRFGHPRRKRPISSVIL 211
Query: 219 DFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278
D ++I+ D+++FL ++Y G ++RGYLLYGPPGTGKSS I A+A L +
Sbjct: 212 DKGKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLSICI 271
Query: 279 LELSSVE-GNKDLRQILIATENKSILVVEDIDCCLEM--QDRLAKAKAA-IPDL------ 328
L L+ + L Q+L +SI+++EDID ++ D AK+ +A P +
Sbjct: 272 LNLAGKSVSDTSLNQLLATAPQRSIILLEDIDSAIQTGNHDLSAKSNSANAPSISSGGLQ 331
Query: 329 ----YRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMD 384
Y + +T SGLLN +DG+ +S G RI+ TTNH ++LD L+RPGR+D
Sbjct: 332 YQGYYGNPSVSSGGSALTFSGLLNALDGVAASEG--RILFMTTNHLEKLDKVLIRPGRVD 389
Query: 385 VHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEVTPADVAEQLM 435
+ I + C+ + + + T+ L + E +E + +PA + M
Sbjct: 390 LQIEIGLCSSYQMEQMFLKFY-PTDFDLAKQFVEKLENYKFSPAQLQAYFM 439
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 110/197 (55%), Gaps = 18/197 (9%)
Query: 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF 274
++ +D +K+ I+DD+ F+K ++Y G ++RGYLLYGPPG+GK+S I A+A L++
Sbjct: 227 SVILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDY 286
Query: 275 DVYDLELSSVEGNKD-LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSAC 333
++ L LS D L ++ +SIL++EDID + + +
Sbjct: 287 NICILNLSENNLTDDRLNHLMNNMPERSILLLEDIDAAFNKRSQTGE------------- 333
Query: 334 NQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCT 393
QG VT SGLLN +DG+ SS +E I TTNH ++LD A++RPGR+D + + T
Sbjct: 334 -QGFHSSVTFSGLLNALDGVTSS--EETITFMTTNHPEKLDAAIMRPGRIDYKVFVGNAT 390
Query: 394 PCGF-KMLASNYLGITE 409
P KM Y G T+
Sbjct: 391 PYQVEKMFMKFYPGETD 407
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 120/224 (53%), Gaps = 17/224 (7%)
Query: 172 HILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPA-TFDTLAMDFDMKKMIMDDL 230
+IL++++EL+ K++ K Y W+ ++ ++ + + I+ D+
Sbjct: 149 NILQEARELALKQQVGKTVM---YNAVGAEWRQFGFPRRRRPLSSVVLEQGISEKIVQDV 205
Query: 231 ERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV-YDLELSSVEGNKD 289
+ F++ ++Y G ++RGYLLYGPPG GKSS I A+A L + + S +
Sbjct: 206 KGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSICLMSLSDSSLSDDR 265
Query: 290 LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNF 349
L +L +SI+++ED+D +D + A + R +T SGLLN
Sbjct: 266 LNHLLSVAPQQSIILLEDVDAAFVSRDLNKQNPTAYQGMGR----------LTFSGLLNA 315
Query: 350 IDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCT 393
+DG+ S+ + RI+ TTNH DRLDPAL+RPGR+DV ++ +CT
Sbjct: 316 LDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDVKQYVGHCT 357
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 106/182 (58%), Gaps = 12/182 (6%)
Query: 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 272
++ ++ + + I+DD++ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L
Sbjct: 188 LSSVVLESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 273 NFDVYDLELSSVEGNKD-LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS 331
+ + + LS + D L +L +SI+++ED+D ++ L P Y+
Sbjct: 248 GYSICLMSLSDRSLSDDRLNHLLSVAPQQSIILLEDVDAAFVSRELLPTEN---PLAYQG 304
Query: 332 ACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSY 391
++T SGLLN +DG+ SS + RI+ TTN +RLDPAL+RPGR+D+ ++ +
Sbjct: 305 MG------RLTFSGLLNALDGVASS--EARIVFMTTNFIERLDPALVRPGRVDLKQYVGH 356
Query: 392 CT 393
C+
Sbjct: 357 CS 358
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 13/182 (7%)
Query: 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 272
+++ + + I+ D++ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L
Sbjct: 188 LNSVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 273 NFDV-YDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS 331
+ S + L +L +S++++ED+D +D + L R
Sbjct: 248 EHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPVKYQGLGR- 306
Query: 332 ACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSY 391
+T SGLLN +DG+ S+ + RI+ TTNH DRLDPAL+RPGR+D+ ++ Y
Sbjct: 307 ---------LTFSGLLNALDGVAST--EARIVFMTTNHVDRLDPALIRPGRVDLKEYVGY 355
Query: 392 CT 393
C+
Sbjct: 356 CS 357
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 101/182 (55%), Gaps = 13/182 (7%)
Query: 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 272
+++ ++ + + I+ D+ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L
Sbjct: 188 LNSVVLEQGVTERIVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 273 NFDV-YDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS 331
+ S + L +L +S++++ED+D +D A+ L R
Sbjct: 248 QHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAAENPIKYQGLGR- 306
Query: 332 ACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSY 391
+T SGLLN +DG+ S+ + RI+ TTNH DRLDPAL+RPGR+D+ ++ +
Sbjct: 307 ---------LTFSGLLNALDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDMKEYVGH 355
Query: 392 CT 393
C+
Sbjct: 356 CS 357
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 144/272 (52%), Gaps = 20/272 (7%)
Query: 170 IPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATFDTLA---MDFDMKKMI 226
I +L+++ LS + K T+ G W+ +P + +L+ + D+K +
Sbjct: 144 INQLLQEAMTLSLNRDIGK--TVIYINGGNGNWER--FGNPRSIRSLSSVILADDLKSKL 199
Query: 227 MDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE- 285
++D++ F+ + +Y+ G ++RGYLLYG PG GKSSLI A+A LN D+ + LSS +
Sbjct: 200 IEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGELNLDICIVSLSSKDI 259
Query: 286 GNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSG 345
+K + +L KSIL++EDID K+ ++ + N N +T SG
Sbjct: 260 DDKQINHLLNNAPPKSILLIEDIDAAF---------KSHRDNVDSNNNNSNNNNSLTYSG 310
Query: 346 LLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYL 405
LLN +DG+ S G RI+ TTN + LD AL+R GR+D+ I +S T L +++
Sbjct: 311 LLNALDGVASQEG--RILFMTTNKIELLDSALIREGRIDLKIKVSNATKSQAAQLFTHFY 368
Query: 406 GI-TEHPLFLEVEELIEKVEVTPADVAEQLMR 436
+ T++ L + E + +++ + + L++
Sbjct: 369 NLPTDNQLAIRFSENLHDHQLSMSQIQGFLLK 400
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 19/228 (8%)
Query: 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 272
D++ + + I+ D+ F+ ++Y G ++RGYLLYGPPG GKSS I A+A L
Sbjct: 188 LDSVVLQQGLADRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGEL 247
Query: 273 NFDV-YDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS 331
+ S + L +L +S++++ED+D +D + L R
Sbjct: 248 EHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPIKYQGLGR- 306
Query: 332 ACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSY 391
+T SGLLN +DG+ S+ + RI+ TTN+ DRLDPAL+RPGR+D+ ++ Y
Sbjct: 307 ---------LTFSGLLNALDGVAST--EARIVFMTTNYIDRLDPALIRPGRVDLKEYVGY 355
Query: 392 CTPCGF-KMLASNYLGITEHPLFLE--VEELIEKV-EVTPADVAEQLM 435
C+ +M Y G + P E E +++ E++PA V M
Sbjct: 356 CSHWQLTQMFQRFYPG--QAPSLAENFAEHVLKATSEISPAQVQGYFM 401
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 24/215 (11%)
Query: 184 KKTLKLFTLFPYRGDTEIW-QSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKR 242
++++ + + P D+ + V+ ++D + + + I + +E+ LK E +++
Sbjct: 148 QQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEK 207
Query: 243 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGNKDLRQILIA 296
VG +G LLYGPPGTGK+ L A+AN+ + L + EG + +R++
Sbjct: 208 VGVEPPKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQKFIGEGARLVRELFEL 267
Query: 297 TENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLW 354
K SI+ +++ID + R A + Q TL+ LL +DG
Sbjct: 268 AREKAPSIIFIDEIDAIGARR-------------MRDATSGDREVQRTLTQLLAEMDGFD 314
Query: 355 SSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHM 389
D+ +I TN KD LDPALLRPGR D HI +
Sbjct: 315 PL--DDIKVIAATNRKDILDPALLRPGRFDRHIKI 347
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 104/233 (44%), Gaps = 24/233 (10%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATFDTLAMDFDMKK 224
+L T LK S ++ + + L + P D+ I + P DM+K
Sbjct: 116 ILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQK 175
Query: 225 M-IMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283
I + +E L + + YK++G RG LLYGPPGTGK+ L+ A+AN + S
Sbjct: 176 QEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSE 235
Query: 284 V------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335
EG + +R + +A EN +I+ +++ID + + +
Sbjct: 236 FVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKR-------------FDAQTGA 282
Query: 336 GNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIH 388
Q L LLN +DG S + +I TN D LDPALLRPGR+D I
Sbjct: 283 DREVQRILLELLNQMDGFEQSSNVK--VIMATNRADTLDPALLRPGRLDRKIE 333
>sp|P85200|PRS6B_HELAN 26S protease regulatory subunit 6B homolog OS=Helianthus annuus
PE=1 SV=1
Length = 414
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 109/232 (46%), Gaps = 24/232 (10%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHP-ATFDTLAMDFDMK 223
+L T +LK S ++ + + L + P D+ I + P T++ + K
Sbjct: 111 ILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQK 170
Query: 224 KMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283
+ I + +E L E YK++G RG LLYGPPGTGK+ L A+AN+ + S
Sbjct: 171 QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 230
Query: 284 V------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335
EG + +R + +A EN +I+ ++++D +A A+ + +
Sbjct: 231 FVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDA-------IATAR------FDAQTGA 277
Query: 336 GNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 387
Q L LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 278 DREVQRILMELLNQMDGFDQTVNVK--VIMATNRADTLDPALLRPGRLDRKI 327
>sp|Q9SEI4|PRS6B_ARATH 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana
GN=RPT3 PE=1 SV=1
Length = 408
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 24/233 (10%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHP-ATFDTLAMDFDMK 223
+L T +LK S ++ + + L + P D+ I + P +++ + K
Sbjct: 105 ILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQK 164
Query: 224 KMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283
+ I + +E L E YK++G RG LLYGPPGTGK+ L A+AN+ + S
Sbjct: 165 QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 224
Query: 284 V------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335
EG + +R + +A EN +I+ ++++D +A A+ + +
Sbjct: 225 FVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDA-------IATAR------FDAQTGA 271
Query: 336 GNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIH 388
Q L LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 272 DREVQRILMELLNQMDGFDQTVNVK--VIMATNRADTLDPALLRPGRLDRKIE 322
>sp|P54778|PRS6B_SOLTU 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 413
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 24/232 (10%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHP-ATFDTLAMDFDMK 223
+L T +LK S + + + L + P D+ I + P T++ + K
Sbjct: 110 ILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQK 169
Query: 224 KMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283
+ I + +E L E YK++G RG LLYGPPGTGK+ L A+A++ + S
Sbjct: 170 QEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSE 229
Query: 284 V------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335
EG + +R + +A EN +I+ ++++D +A A+ + +
Sbjct: 230 FVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDA-------IATAR------FDAQTGA 276
Query: 336 GNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 387
Q L LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 277 DREVQRILMELLNQMDGFDQTVNVK--VIMATNRADTLDPALLRPGRLDRKI 326
>sp|Q2SF13|FTSH_HAHCH ATP-dependent zinc metalloprotease FtsH OS=Hahella chejuensis
(strain KCTC 2396) GN=ftsH PE=3 SV=1
Length = 619
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 24/184 (13%)
Query: 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 271
TFD +A + K+ + + +E +L+ + + RVG RG LL GPPGTGK+ L A+A
Sbjct: 174 TFDEVAGQTNAKREVQELVE-YLRDPDRFHRVGALAPRGVLLMGPPGTGKTLLARALAGE 232
Query: 272 LNFDVYDLELSS-VE-----GNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKA 323
+ Y + S +E G +RQ+ IA EN SI+ ++++D + + +
Sbjct: 233 AGVNFYPMSASEFIEVFVGVGASRVRQLFKIAKENSPSIIFIDELDS-------VGRTRG 285
Query: 324 AIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRM 383
A + + TL+ +L +DG + D I++ TN D LDPAL+RPGR
Sbjct: 286 A------GYGGGHDEREQTLNQILAEMDGF--AGHDAVIVLAATNRPDVLDPALMRPGRF 337
Query: 384 DVHI 387
D H+
Sbjct: 338 DRHV 341
>sp|P33298|PRS6B_YEAST 26S protease regulatory subunit 6B homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT3 PE=1
SV=2
Length = 428
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 104/233 (44%), Gaps = 24/233 (10%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATFDTLAMDFDMKK 224
+L T +LK S ++ + + L + P D+ I + P DM+K
Sbjct: 122 ILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQK 181
Query: 225 M-IMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283
I + +E L + + Y+++G RG LLYGPPGTGK+ L+ A+AN + S
Sbjct: 182 QEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241
Query: 284 V------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335
EG + +R + +A EN SI+ ++++D + + +
Sbjct: 242 FVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKR-------------FDAQTGS 288
Query: 336 GNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIH 388
Q L LL +DG S + +I TN D LDPALLRPGR+D I
Sbjct: 289 DREVQRILIELLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLDRKIE 339
>sp|O74894|PRS6B_SCHPO 26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpt3 PE=3 SV=1
Length = 389
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 107/234 (45%), Gaps = 26/234 (11%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHP--ATFDTLAMDFDM 222
+L T +LK S ++ ++ + L + P D+ I + P + D +D
Sbjct: 84 ILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDV-Q 142
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ + + +E L + + Y+++G RG LLYGPPGTGK+ L+ A+AN + + S
Sbjct: 143 KQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGS 202
Query: 283 SV------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + +A EN +I+ +++ID + + +
Sbjct: 203 EFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKR-------------FDAQTG 249
Query: 335 QGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIH 388
Q L LL +DG G +I TN D LDPALLRPGR+D I
Sbjct: 250 ADREVQRILIELLTQMDGF--DQGANVKVIMATNRADTLDPALLRPGRLDRKIE 301
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 16/157 (10%)
Query: 264 LIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENK-SILVVEDIDCCLE-MQDRLAKA 321
+I A++ + ++ L L++++ + +L +L A K +ILV+EDIDC E ++ R +
Sbjct: 1 MIKAISTHTKRHIHYLILNNIQDDNELINLLNAVNCKETILVLEDIDCASEAVKSRAKEE 60
Query: 322 KAAIPDLYRSACNQGNRF------------QVTLSGLLNFIDGLWSSCGDERIIIFTTNH 369
+ + + N+ ++TLSG+LN +DG+++S G RI+I TTNH
Sbjct: 61 ETVVEKVTDDKSTLENKILADQLKKVEKVSKLTLSGILNSLDGIFNSEG--RIVIMTTNH 118
Query: 370 KDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406
+ LDPAL+R GR+D+ I S C + N+ G
Sbjct: 119 SEVLDPALIRRGRIDMQIEFSNCDRYQIAKMYENFYG 155
>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH2 PE=3 SV=1
Length = 728
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 30/191 (15%)
Query: 208 DHPATFDTLAM---DFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSL 264
D P TF+ +A D + ++D FLK E Y+ +G +G LL GPPGTGK+ L
Sbjct: 245 DLPTTFEDVAGIEEAVDEVREVVD----FLKNSEKYQSLGGRIPKGVLLVGPPGTGKTLL 300
Query: 265 IAAMANYLNFDVYDLELSS-VE-----GNKDLRQILIATENKS--ILVVEDIDCCLEMQD 316
A+A + L S VE G +R + N++ I+ ++++D
Sbjct: 301 AKAIAGEAGVPFFSLSGSDFVEMFVGVGAARVRDMFTQAVNRAPCIIFIDELDA------ 354
Query: 317 RLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPA 376
L K+++ S + + TL+ LL +DG S+ G I++ TN + LDPA
Sbjct: 355 -LGKSRSG------SVVGGHDEREQTLNALLVEMDGFDSNSG--VIVVAATNRPETLDPA 405
Query: 377 LLRPGRMDVHI 387
LLRPGR D H+
Sbjct: 406 LLRPGRFDRHV 416
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 90/184 (48%), Gaps = 28/184 (15%)
Query: 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN 273
D +D + K+ IM+ +FLK +FY+R+G RG +L GPPGTGK+ L A A N
Sbjct: 297 DVAGVD-EAKEEIME-FVKFLKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATAGEAN 354
Query: 274 FDVYD------LELSSVEGNKDLRQILIATENKS---ILVVEDIDCCLEMQDRLAKAKAA 324
LE+ G +R L AT K+ I+ +++ID + + R +
Sbjct: 355 VPFLSVSGSEFLEMFVGVGPSRVRD-LFATARKNAPCIIFIDEIDAIGKARGRGGQ---- 409
Query: 325 IPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFT-TNHKDRLDPALLRPGRM 383
+ + TL+ LL +DG SS E I++F TN D LDPALLRPGR
Sbjct: 410 --------FGSNDERESTLNQLLVEMDGFTSS---EHIVVFAGTNRPDVLDPALLRPGRF 458
Query: 384 DVHI 387
D I
Sbjct: 459 DRQI 462
>sp|Q4R7L3|PRS6B_MACFA 26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4
PE=2 SV=1
Length = 418
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 104/233 (44%), Gaps = 26/233 (11%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATF--DTLAMDFDM 222
+L T +LK + ++ K + L + P D+ I + P D MD
Sbjct: 115 ILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDI-Q 173
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ + + +E L E YK++G RG L+YGPPG GK+ L A+A++ + S
Sbjct: 174 KQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGS 233
Query: 283 SV------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + +A EN +I+ +++ID + + +
Sbjct: 234 EFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKR-------------FDAQTG 280
Query: 335 QGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 387
Q L LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 281 ADREVQRILLELLNQMDGFDQNVNVK--VIMATNRADTLDPALLRPGRLDRKI 331
>sp|P43686|PRS6B_HUMAN 26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1
SV=2
Length = 418
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 104/233 (44%), Gaps = 26/233 (11%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATF--DTLAMDFDM 222
+L T +LK + ++ K + L + P D+ I + P D MD
Sbjct: 115 ILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDI-Q 173
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ + + +E L E YK++G RG L+YGPPG GK+ L A+A++ + S
Sbjct: 174 KQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGS 233
Query: 283 SV------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + +A EN +I+ +++ID + + +
Sbjct: 234 EFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKR-------------FDAQTG 280
Query: 335 QGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 387
Q L LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 281 ADREVQRILLELLNQMDGFDQNVNVK--VIMATNRADTLDPALLRPGRLDRKI 331
>sp|Q3T030|PRS6B_BOVIN 26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1
Length = 418
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 104/233 (44%), Gaps = 26/233 (11%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATF--DTLAMDFDM 222
+L T +LK + ++ K + L + P D+ I + P D MD
Sbjct: 115 ILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDI-Q 173
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ + + +E L E YK++G RG L+YGPPG GK+ L A+A++ + S
Sbjct: 174 KQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGS 233
Query: 283 SV------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + +A EN +I+ +++ID + + +
Sbjct: 234 EFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKR-------------FDAQTG 280
Query: 335 QGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 387
Q L LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 281 ADREVQRILLELLNQMDGFDQNVNVK--VIMATNRADTLDPALLRPGRLDRKI 331
>sp|Q63570|PRS6B_RAT 26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4
PE=1 SV=1
Length = 418
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 104/233 (44%), Gaps = 26/233 (11%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATF--DTLAMDFDM 222
+L T +LK + ++ K + L + P D+ I + P D MD
Sbjct: 115 ILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDI-Q 173
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ + + +E L E YK++G RG L+YGPPG GK+ L A+A++ + S
Sbjct: 174 KQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGS 233
Query: 283 SV------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + +A EN +I+ +++ID + + +
Sbjct: 234 EFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKR-------------FDAQTG 280
Query: 335 QGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 387
Q L LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 281 ADREVQRILLELLNQMDGFDQNVNVK--VIMATNRADTLDPALLRPGRLDRKI 331
>sp|P54775|PRS6B_MOUSE 26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1
SV=2
Length = 418
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 104/233 (44%), Gaps = 26/233 (11%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATF--DTLAMDFDM 222
+L T +LK + ++ K + L + P D+ I + P D MD
Sbjct: 115 ILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDI-Q 173
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ + + +E L E YK++G RG L+YGPPG GK+ L A+A++ + S
Sbjct: 174 KQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGS 233
Query: 283 SV------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + +A EN +I+ +++ID + + +
Sbjct: 234 EFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKR-------------FDAQTG 280
Query: 335 QGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 387
Q L LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 281 ADREVQRILLELLNQMDGFDQNVNVK--VIMATNRADTLDPALLRPGRLDRKI 331
>sp|P53549|PRS10_YEAST 26S protease subunit RPT4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPT4 PE=1 SV=4
Length = 437
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 24/232 (10%)
Query: 174 LKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPA-TFDTLAMDFDMKKMIMDDLER 232
LKK ++ TL + + P D ++ + + TFD + + + + + +E
Sbjct: 140 LKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIEL 199
Query: 233 FLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EG 286
LK E ++RVG +G LLYGPPGTGK+ L A+A + + S + E
Sbjct: 200 PLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGES 259
Query: 287 NKDLRQILI-ATENKS-ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLS 344
+ +R++ A E++ I+ ++++D R ++ +A ++ R TL
Sbjct: 260 ARIIREMFAYAKEHEPCIIFMDEVDAI--GGRRFSEGTSADREIQR-----------TLM 306
Query: 345 GLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCG 396
LL +DG + + G +II+ TN D LDPALLRPGR+D + + G
Sbjct: 307 ELLTQMDG-FDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356
>sp|P34123|PRS6B_DICDI 26S protease regulatory subunit 6B homolog OS=Dictyostelium
discoideum GN=psmC4 PE=1 SV=1
Length = 403
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 107/232 (46%), Gaps = 24/232 (10%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATFDTLAMDFDMKK 224
+L T +LK S ++ ++ + L P D+ I + P+ + D++K
Sbjct: 100 ILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQK 159
Query: 225 MIMDD-LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283
M + +E L YK++G RG LLYGPPGTGK+ L A+A++ + + S
Sbjct: 160 QEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSE 219
Query: 284 V------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335
EG + +R + +A EN +I+ +++ID + + +
Sbjct: 220 FVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATKR-------------FDAQTGA 266
Query: 336 GNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 387
Q L LLN +DG S + +I TN +D LDPALLRPGR+D I
Sbjct: 267 DREVQRILMELLNQMDGFDVSVNVK--VIMATNRQDTLDPALLRPGRLDRKI 316
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 83/166 (50%), Gaps = 25/166 (15%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGN 287
LK E +++VG +G LLYGPPGTGK+ L A+A N + S + EG
Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGA 227
Query: 288 KDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR-FQVTLS 344
K +R + + KS I+ +++ID A+ + G+R Q TL
Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEID--------------AVASKRTESLTGGDREVQRTLM 273
Query: 345 GLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMS 390
LL +DG + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 274 QLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 83/166 (50%), Gaps = 25/166 (15%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGN 287
LK E +++VG +G LLYGPPGTGK+ L A+A N + S + EG
Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGA 227
Query: 288 KDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR-FQVTLS 344
K +R + + KS I+ +++ID A+ + G+R Q TL
Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEID--------------AVASKRTESLTGGDREVQRTLM 273
Query: 345 GLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMS 390
LL +DG + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 274 QLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 83/166 (50%), Gaps = 25/166 (15%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGN 287
LK E +++VG +G LLYGPPGTGK+ L A+A N + S + EG
Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGA 227
Query: 288 KDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR-FQVTLS 344
K +R + + KS I+ +++ID A+ + G+R Q TL
Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEID--------------AVASKRTESLTGGDREVQRTLM 273
Query: 345 GLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMS 390
LL +DG + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 274 QLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 122/264 (46%), Gaps = 29/264 (10%)
Query: 171 PHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPA-TFDTLAMDFDMKKMIMDD 229
P +LK + +++L + + P D +I+ ++ P T++ + + I +
Sbjct: 109 PDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREA 168
Query: 230 LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSS--- 283
+E L + + +++VG + +G LLYGPPGTGK+ L A+A+ N V EL
Sbjct: 169 VELPLTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYI 228
Query: 284 VEGNKDLRQI--LIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR-FQ 340
EG + +R++ L SI+ +++ID AI + G+R Q
Sbjct: 229 GEGARLVRELFDLAKQRAPSIIFIDEID--------------AIGAHRNDSTTSGDREVQ 274
Query: 341 VTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCG---F 397
TL LL +DG + + GD +I+ TN D LD ALLRPGR D I + G
Sbjct: 275 RTLMQLLAEMDG-FDNRGDVKIVA-ATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAI 332
Query: 398 KMLASNYLGITEHPLFLEVEELIE 421
+ + Y+ I E EV L E
Sbjct: 333 LKIHTQYMNIGEDVNLSEVSRLTE 356
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 83/166 (50%), Gaps = 25/166 (15%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGN 287
LK E +++VG +G LLYGPPGTGK+ L A+A N + S + EG
Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGA 227
Query: 288 KDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR-FQVTLS 344
K +R + + KS I+ +++ID A+ + G+R Q TL
Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEID--------------AVASKRTESLTGGDREVQRTLM 273
Query: 345 GLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMS 390
LL +DG + S GD +II TN D LDPA+LRPGR D I +S
Sbjct: 274 QLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIS 317
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 83/166 (50%), Gaps = 25/166 (15%)
Query: 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGN 287
LK E +++VG +G LLYGPPGTGK+ L A+A N + S + EG
Sbjct: 168 LKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGA 227
Query: 288 KDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR-FQVTLS 344
K +R + + KS I+ +++ID A+ + G+R Q TL
Sbjct: 228 KLVRDVFKLAKEKSPCIIFIDEID--------------AVASKRTESLTGGDREVQRTLM 273
Query: 345 GLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMS 390
LL +DG + S GD +II TN D LDPA+LRPGR D I ++
Sbjct: 274 QLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEIA 317
>sp|P46507|PRS6B_MANSE 26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1
Length = 415
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 104/234 (44%), Gaps = 26/234 (11%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPAT--FDTLAMDFDM 222
+L T +LK S ++ K + L + P D+ I + P D MD
Sbjct: 112 ILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMD-TQ 170
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ I + +E L E Y+++G RG L+YGPPG GK+ L A+A++ + S
Sbjct: 171 KQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGS 230
Query: 283 SV------EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + +A EN +I+ +++ID + + +
Sbjct: 231 EFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKR-------------FDAQTG 277
Query: 335 QGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIH 388
Q L LLN +DG + + +I TN D LDPALLRPGR+D I
Sbjct: 278 ADREVQRILLELLNQMDGFDQTTNVK--VIMATNRADTLDPALLRPGRLDRKIE 329
>sp|Q25544|PRS8_NAEFO 26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2
SV=1
Length = 414
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 22/185 (11%)
Query: 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 270
AT++ + + K I + +E +K E ++ +G A +G ++YGPPGTGK+ L A+A+
Sbjct: 153 ATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVAH 212
Query: 271 YLNFDVYDLELSSV------EGNKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAK 322
+ + + S + EG+K +R++ + SI+ +++ID + K
Sbjct: 213 HTDCTFIRVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRTEGGKGG 272
Query: 323 AAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGR 382
+ Q T+ LLN +DG S+ + II TN D LDPALLRPGR
Sbjct: 273 GD------------SEVQRTMLELLNQLDGFESTQNIK--IIMATNRIDILDPALLRPGR 318
Query: 383 MDVHI 387
+D I
Sbjct: 319 IDRKI 323
>sp|Q8SQI9|PRS6B_ENCCU 26S protease regulatory subunit 6B homolog OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU08_1970 PE=1 SV=1
Length = 387
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 26/234 (11%)
Query: 165 VLRTYIPHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPATF--DTLAMDFDM 222
+L T +LK + ++ + + + + P D+ I + P+ D +D
Sbjct: 84 ILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDV-Q 142
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282
K+ I + +E L + + Y+++G +G LLYGPPGTGK+ L+ A+AN+ + S
Sbjct: 143 KQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGS 202
Query: 283 SV------EGNKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R + K SI+ ++++D + + ++ +
Sbjct: 203 EFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATKR-------------FDASTS 249
Query: 335 QGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIH 388
Q L LLN +DG + + +I TN D +DPALLRPGR+D I
Sbjct: 250 ADREVQRVLIELLNQMDGFDPAANVK--VIMATNRADTIDPALLRPGRLDRKIE 301
>sp|A6LD25|FTSH_PARD8 ATP-dependent zinc metalloprotease FtsH OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=ftsH PE=3 SV=1
Length = 684
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 93/190 (48%), Gaps = 23/190 (12%)
Query: 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAA 267
D TF +A + K+ + +++ FLK E Y +G +G LL GPPGTGK+ L A
Sbjct: 190 DRKVTFKDVAGLAEAKQEV-EEIVSFLKNPEKYTELGGKIPKGALLVGPPGTGKTLLAKA 248
Query: 268 MANYLNFDVYDLELSS-VE-----GNKDLRQILIATENKS--ILVVEDIDCCLEMQDRLA 319
+A N + L S VE G +R + + KS I+ +++ID +
Sbjct: 249 VAGEANVPFFSLSGSDFVEMFVGVGASRVRDLFRQAKEKSPCIVFIDEIDA-------VG 301
Query: 320 KAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLR 379
+A+ ++ N + + TL+ LL +DG S+ G II+ TN D LD ALLR
Sbjct: 302 RARGKNANM-----NSNDERENTLNQLLTEMDGFGSNSG--VIILAATNRADILDKALLR 354
Query: 380 PGRMDVHIHM 389
GR D IH+
Sbjct: 355 AGRFDRQIHV 364
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 26/229 (11%)
Query: 171 PHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPA-TFDTLAMDFDMKKMIMDD 229
P +K + +++L + L P D +++ +D P + + + + +
Sbjct: 134 PDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREA 193
Query: 230 LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSS--- 283
+E LKR E + ++G +G LLYGPPGTGK+ L A+A+ N V EL
Sbjct: 194 VELPLKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYI 253
Query: 284 VEGNKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR-FQ 340
EG + +R++ + K +I+ +++ID A+ A G+R Q
Sbjct: 254 GEGARLVRELFDLAKKKAPTIIFIDEID--------------AVGASRTEANTSGDREVQ 299
Query: 341 VTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHM 389
TL LL +DG + + GD + II TN D LD ALLRPGR D I +
Sbjct: 300 RTLMQLLAGMDG-FETRGDVK-IIGATNRIDILDKALLRPGRFDRIIEI 346
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 26/183 (14%)
Query: 224 KMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283
+++ + +E LK E ++R+G +G LLYGPPGTGK+ + A+AN ++ +
Sbjct: 192 RLVREMIELPLKHPELFQRLGIEPPKGVLLYGPPGTGKTLIAKAVANEVDAHFIPISGPE 251
Query: 284 V------EGNKDLRQIL-IATEN-KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335
+ E + LR+I A EN SI+ +++ID ++ +
Sbjct: 252 IMSKYYGESEQRLREIFEEAKENAPSIIFIDEIDSIAPKREEVT---------------- 295
Query: 336 GNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPC 395
G + ++ LL +DGL + GD I+I TN D +DPAL RPGR D I +
Sbjct: 296 GEVERRVVAQLLALMDGL-EARGD-VIVIAATNRPDAIDPALRRPGRFDREIEIGVPDKE 353
Query: 396 GFK 398
G K
Sbjct: 354 GRK 356
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 27/211 (12%)
Query: 223 KKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDL 279
K+ +M+ +E LK E ++ RG LL+GPPGTGK+ L A+AN N V
Sbjct: 464 KQELMEAVEWPLKYPEVFRAANIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGP 523
Query: 280 ELSS---VEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336
EL S E K +R++ + V+ + D LA + I D + +
Sbjct: 524 ELLSKWVGESEKHVREMFRKARQVAPCVI-----FFDEIDSLAPRRGGIGDSHVT----- 573
Query: 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCG 396
+ +S LL +DGL + ++I TN D +DPALLRPGR++ HI Y P
Sbjct: 574 ---ERVVSQLLTELDGLEEL--KDVVVIAATNRPDMIDPALLRPGRLERHI---YIPPPD 625
Query: 397 FKMLASNY-LGITEHPLF--LEVEELIEKVE 424
K + + + PL + +EEL EK E
Sbjct: 626 KKARVEIFKIHLRGKPLADDVNIEELAEKTE 656
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 98/202 (48%), Gaps = 28/202 (13%)
Query: 230 LERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284
+E L R E + VG G LLYGPPGTGK+ L A+AN N + S +
Sbjct: 166 VEMPLDRPEMFAEVGIDPPSGVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFI 225
Query: 285 -EGNKDLRQIL-IATENK-SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN-RFQ 340
EG K +R + +A EN+ +++ +++ID AI + G+ Q
Sbjct: 226 GEGAKLVRDLFEVARENEPAVIFIDEID--------------AIASKRTDSKTSGDAEVQ 271
Query: 341 VTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKM- 399
T+ LL +DG + G+ RII TN D LDPA+LRPGR D I + G ++
Sbjct: 272 RTMMQLLAEMDG-FDERGNIRIIA-ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREII 329
Query: 400 --LASNYLGITEHPLFLEVEEL 419
+ + + +++ F+E+ E+
Sbjct: 330 FQIHTRKMNVSDDVDFVELAEM 351
>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2
SV=1
Length = 440
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 23/170 (13%)
Query: 226 IMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV- 284
I + +E L E+Y+ +G +G +LYGPPGTGK+ L A+AN + + S +
Sbjct: 197 IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI 256
Query: 285 -----EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337
+G K +R++ E SI+ +++ID + Y S
Sbjct: 257 QKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKR-------------YDSNSGGER 303
Query: 338 RFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 387
Q T+ LLN +DG + S GD ++I+ TN + LDPAL+RPGR+D I
Sbjct: 304 EIQRTMLELLNQLDG-FDSRGDVKVIM-ATNRIETLDPALIRPGRIDRKI 351
>sp|Q01939|PRS8_YEAST 26S protease regulatory subunit 8 homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPT6 PE=1
SV=4
Length = 405
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 23/185 (12%)
Query: 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 270
+T+D + K I + +E +K E ++ +G A +G +LYGPPGTGK+ L A+A+
Sbjct: 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204
Query: 271 YLN---FDVYDLELSS---VEGNKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAK 322
+ + V EL EG++ +R++ + SI+ +++ID +
Sbjct: 205 HTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTR------- 257
Query: 323 AAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGR 382
+ + Q T+ LLN +DG +S + II TN D LDPALLRPGR
Sbjct: 258 ------VEGSGGGDSEVQRTMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLRPGR 309
Query: 383 MDVHI 387
+D I
Sbjct: 310 IDRKI 314
>sp|Q2FQ56|PAN_METHJ Proteasome-activating nucleotidase OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=pan PE=3 SV=1
Length = 412
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 40/231 (17%)
Query: 171 PHILKKSKELSKKKKTLKLFTLFPYRGDTEIWQSVNLDHPA-TFDTLAMDFDMKKMIMD- 228
P LK + +++L + + P D++++ +D P T++ + ++K IM+
Sbjct: 109 PTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIG---GLEKQIMEI 165
Query: 229 --DLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV-- 284
+E + R + ++++G +G LLYGPPGTGK+ L A+A+ + + + L +V
Sbjct: 166 REAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGKTLLAKAVAH----ETHAIFLHTVGS 221
Query: 285 --------EGNKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334
EG + +R++ + K SI+ +++ID AI A
Sbjct: 222 ELVQKYIGEGARLVRELFDLAKEKAPSIVFIDEID--------------AIGASRTEAMT 267
Query: 335 QGNR-FQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMD 384
G+R Q TL LL +DG + GD + II TN D LD ALLRPGR D
Sbjct: 268 SGDREVQRTLMQLLAAMDG-FEPRGDVK-IIGATNRIDILDAALLRPGRFD 316
>sp|O26824|PAN_METTH Proteasome-activating nucleotidase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pan PE=3 SV=1
Length = 410
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 27/181 (14%)
Query: 226 IMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV- 284
+ + +E LK+ E ++++G +G LLYGPPGTGK+ L A+A+ N + S
Sbjct: 163 VKETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFV 222
Query: 285 -----EGNKDLRQI--LIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337
EG + +R + L ++ SI+ +++ID + +S+ +
Sbjct: 223 RKYIGEGARLVRGVFELAKEKSPSIIFIDEIDAVAAKR-------------LKSSTSGDR 269
Query: 338 RFQVTLSGLLNFIDGLWS--SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPC 395
Q TL LL +DG S + G I+ TN D LDPALLRPGR D I +
Sbjct: 270 EVQRTLMQLLAELDGFESRGNVG----IVAATNRPDILDPALLRPGRFDRFIEVPLPNED 325
Query: 396 G 396
G
Sbjct: 326 G 326
>sp|D1C2C6|FTSH2_SPHTD ATP-dependent zinc metalloprotease FtsH 2 OS=Sphaerobacter
thermophilus (strain DSM 20745 / S 6022) GN=ftsH2 PE=3
SV=1
Length = 652
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 32/184 (17%)
Query: 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 271
TFD +A ++K+ + D ++ +L+ E ++R+G RG LL GPPGTGK+ L A+A
Sbjct: 158 TFDDVAGAEEVKEEVADIVD-YLRDPERFRRLGARIPRGVLLTGPPGTGKTLLTRALAGE 216
Query: 272 LNFDVYD------LELSSVEGNKDLRQILI-ATENK-SILVVEDIDCCLEMQDRLAKAKA 323
+ +EL G +R++ A EN +I+ +++ID + R+
Sbjct: 217 ARASFFSVSGSEFVELYVGVGASRVRELFRKAKENAPAIIFIDEIDAIGRRRGRM----- 271
Query: 324 AIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDER---IIIFTTNHKDRLDPALLRP 380
Q + + TL+ +L +DG +ER +++ TN D LDPALLRP
Sbjct: 272 ----------EQSSEYDQTLNQILVEMDGF-----EERTTVVVVAATNRVDILDPALLRP 316
Query: 381 GRMD 384
GR D
Sbjct: 317 GRFD 320
>sp|Q9C5U3|PRS8A_ARATH 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana
GN=RPT6A PE=2 SV=1
Length = 419
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 95/185 (51%), Gaps = 22/185 (11%)
Query: 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 270
+T+D + K I + +E +K E ++ +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 217
Query: 271 YLNFDVYDLELSSV------EGNKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAK 322
+ + + S + EG++ +R++ + SI+ +++ID + A+
Sbjct: 218 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS-------IGSAR 270
Query: 323 AAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGR 382
+ + N + Q T+ LLN +DG +S ++ ++ TN D LD ALLRPGR
Sbjct: 271 -----MESGSGNGDSEVQRTMLELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGR 323
Query: 383 MDVHI 387
+D I
Sbjct: 324 IDRKI 328
>sp|D2QZ34|FTSH_PIRSD ATP-dependent zinc metalloprotease FtsH OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=ftsH PE=3
SV=1
Length = 700
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 23/163 (14%)
Query: 233 FLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS-VE-----G 286
FL+ E Y+++G +G LL GPPGTGK+ L A+A + L S VE G
Sbjct: 240 FLRSPEKYQKLGGRIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSDFVEMFVGVG 299
Query: 287 NKDLRQILIATENKS--ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLS 344
+R + E K+ I+ ++++D L K++ A + + TL+
Sbjct: 300 AARVRDMFQQAEAKAPCIIFIDELDA-------LGKSRGA------GIMGGHDEREQTLN 346
Query: 345 GLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 387
LL +DG S+ G I++ TN + LDPALLRPGR D H+
Sbjct: 347 ALLVEMDGFGSNSG--VIVMAATNRPETLDPALLRPGRFDRHV 387
>sp|Q94BQ2|PRS8B_ARATH 26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana
GN=RPT6B PE=2 SV=1
Length = 419
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 95/185 (51%), Gaps = 22/185 (11%)
Query: 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 270
+T+D + K I + +E +K E ++ +G A +G LLYGPPGTGK+ L A+A+
Sbjct: 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 217
Query: 271 YLNFDVYDLELSSV------EGNKDLRQILIATENK--SILVVEDIDCCLEMQDRLAKAK 322
+ + + S + EG++ +R++ + SI+ +++ID + A+
Sbjct: 218 HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS-------IGSAR 270
Query: 323 AAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGR 382
+ + N + Q T+ LLN +DG +S ++ ++ TN D LD ALLRPGR
Sbjct: 271 -----MESGSGNGDSEVQRTMLELLNQLDGFEAS--NKIKVLMATNRIDILDQALLRPGR 323
Query: 383 MDVHI 387
+D I
Sbjct: 324 IDRKI 328
>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1
PE=2 SV=1
Length = 440
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 23/170 (13%)
Query: 226 IMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV- 284
I + +E L E+Y+ +G +G +LYGPPGTGK+ L A+AN + + S +
Sbjct: 197 IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI 256
Query: 285 -----EGNKDLRQILIATEN--KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337
+G K +R++ E SI+ +++ID + Y S
Sbjct: 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKR-------------YDSNSGGER 303
Query: 338 RFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 387
Q T+ LLN +DG + S GD ++I+ TN + LDPAL+RPGR+D I
Sbjct: 304 EIQRTMLELLNQLDG-FDSRGDVKVIM-ATNRIETLDPALIRPGRIDRKI 351
>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1
SV=1
Length = 440
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 23/170 (13%)
Query: 226 IMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV- 284
I + +E L E+Y+ +G +G +LYGPPGTGK+ L A+AN + + S +
Sbjct: 197 IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI 256
Query: 285 -----EGNKDLRQILIATEN--KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337
+G K +R++ E SI+ +++ID + Y S
Sbjct: 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKR-------------YDSNSGGER 303
Query: 338 RFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHI 387
Q T+ LLN +DG + S GD ++I+ TN + LDPAL+RPGR+D I
Sbjct: 304 EIQRTMLELLNQLDG-FDSRGDVKVIM-ATNRIETLDPALIRPGRIDRKI 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,749,110
Number of Sequences: 539616
Number of extensions: 7397500
Number of successful extensions: 32483
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 226
Number of HSP's that attempted gapping in prelim test: 30556
Number of HSP's gapped (non-prelim): 1691
length of query: 489
length of database: 191,569,459
effective HSP length: 122
effective length of query: 367
effective length of database: 125,736,307
effective search space: 46145224669
effective search space used: 46145224669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)