Query 011286
Match_columns 489
No_of_seqs 416 out of 3186
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 23:40:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 4E-102 1E-106 786.5 36.5 437 13-464 2-444 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 6.6E-43 1.4E-47 344.6 19.2 214 208-436 145-367 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 3.4E-38 7.3E-43 331.3 19.6 209 209-435 429-646 (693)
4 KOG0734 AAA+-type ATPase conta 100.0 5.8E-38 1.3E-42 320.8 17.1 207 210-435 300-515 (752)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 2.9E-36 6.4E-41 312.6 20.0 220 210-452 507-739 (802)
6 KOG0727 26S proteasome regulat 100.0 3.1E-36 6.7E-41 284.3 17.1 212 210-436 151-371 (408)
7 KOG0733 Nuclear AAA ATPase (VC 100.0 4.7E-35 1E-39 303.7 20.0 220 211-449 187-417 (802)
8 KOG0731 AAA+-type ATPase conta 100.0 2.9E-35 6.4E-40 317.6 19.0 213 208-435 305-527 (774)
9 KOG0736 Peroxisome assembly fa 100.0 5.1E-35 1.1E-39 310.0 18.1 210 210-434 668-888 (953)
10 KOG0726 26S proteasome regulat 100.0 1.6E-34 3.6E-39 277.3 10.2 214 208-436 179-401 (440)
11 PTZ00454 26S protease regulato 100.0 9.7E-33 2.1E-37 286.8 21.9 213 208-435 139-360 (398)
12 KOG0728 26S proteasome regulat 100.0 8.7E-34 1.9E-38 267.4 12.4 213 209-436 142-363 (404)
13 KOG0738 AAA+-type ATPase [Post 100.0 4.5E-33 9.8E-38 276.6 16.6 222 208-452 205-438 (491)
14 KOG0652 26S proteasome regulat 100.0 1.6E-32 3.5E-37 260.2 14.6 213 208-435 165-386 (424)
15 COG0465 HflB ATP-dependent Zn 100.0 2.8E-32 6E-37 290.1 17.0 232 209-456 145-399 (596)
16 PRK03992 proteasome-activating 100.0 5.3E-31 1.2E-35 274.4 21.6 213 208-435 125-346 (389)
17 TIGR03689 pup_AAA proteasome A 100.0 3.9E-31 8.4E-36 280.3 18.4 183 208-407 176-380 (512)
18 PTZ00361 26 proteosome regulat 100.0 7E-31 1.5E-35 274.8 19.8 214 207-435 176-398 (438)
19 TIGR01243 CDC48 AAA family ATP 100.0 9.3E-31 2E-35 293.2 21.9 220 210-451 449-677 (733)
20 TIGR01241 FtsH_fam ATP-depende 100.0 1.4E-30 3E-35 279.7 22.0 232 208-455 49-296 (495)
21 KOG0729 26S proteasome regulat 100.0 3.8E-31 8.3E-36 251.5 12.2 218 202-436 165-393 (435)
22 KOG0735 AAA+-type ATPase [Post 100.0 2.2E-30 4.7E-35 272.7 19.1 232 201-455 652-894 (952)
23 CHL00195 ycf46 Ycf46; Provisio 100.0 3.1E-30 6.7E-35 273.6 20.0 204 210-435 224-438 (489)
24 COG1223 Predicted ATPase (AAA+ 100.0 3.9E-30 8.4E-35 244.0 17.8 206 208-436 115-329 (368)
25 COG0464 SpoVK ATPases of the A 100.0 2.4E-29 5.1E-34 270.5 21.8 213 205-435 232-456 (494)
26 CHL00176 ftsH cell division pr 100.0 2.3E-29 5.1E-34 274.6 21.6 212 208-435 177-397 (638)
27 KOG0739 AAA+-type ATPase [Post 100.0 2.7E-30 5.9E-35 249.0 10.1 207 207-433 125-342 (439)
28 KOG0737 AAA+-type ATPase [Post 100.0 3.2E-29 7E-34 249.1 16.6 221 211-454 89-319 (386)
29 PLN00020 ribulose bisphosphate 100.0 2.3E-28 5E-33 245.4 19.2 207 209-434 110-339 (413)
30 KOG0651 26S proteasome regulat 100.0 2.6E-29 5.7E-34 243.7 11.0 208 212-436 130-348 (388)
31 TIGR01242 26Sp45 26S proteasom 100.0 4.9E-28 1.1E-32 250.5 19.9 214 207-435 115-337 (364)
32 CHL00206 ycf2 Ycf2; Provisiona 100.0 8.2E-28 1.8E-32 275.7 17.4 178 236-435 1618-1851(2281)
33 PF14363 AAA_assoc: Domain ass 100.0 5.6E-28 1.2E-32 203.1 11.8 97 35-132 1-98 (98)
34 PRK10733 hflB ATP-dependent me 100.0 4.3E-27 9.3E-32 259.1 21.7 211 209-435 147-366 (644)
35 TIGR01243 CDC48 AAA family ATP 99.9 1.9E-25 4.1E-30 250.5 21.2 208 210-435 174-390 (733)
36 KOG0740 AAA+-type ATPase [Post 99.9 9E-26 2E-30 231.8 14.0 209 209-436 148-366 (428)
37 KOG0732 AAA+-type ATPase conta 99.9 3.1E-25 6.8E-30 245.7 17.4 211 207-435 258-483 (1080)
38 KOG0730 AAA+-type ATPase [Post 99.9 1.8E-24 3.9E-29 228.1 18.3 206 209-435 180-395 (693)
39 KOG0741 AAA+-type ATPase [Post 99.9 1.4E-24 2.9E-29 222.9 13.1 184 236-435 244-449 (744)
40 KOG0742 AAA+-type ATPase [Post 99.9 4.2E-21 9.2E-26 192.2 14.9 223 157-407 296-530 (630)
41 PF00004 AAA: ATPase family as 99.8 1.2E-20 2.7E-25 165.6 10.2 123 251-391 1-132 (132)
42 PF05496 RuvB_N: Holliday junc 99.8 3E-19 6.5E-24 169.3 19.4 186 208-430 18-218 (233)
43 KOG0744 AAA+-type ATPase [Post 99.8 3.9E-19 8.4E-24 173.9 11.0 179 212-406 140-341 (423)
44 TIGR02881 spore_V_K stage V sp 99.8 1.1E-17 2.5E-22 165.5 18.8 179 213-418 5-204 (261)
45 PRK00080 ruvB Holliday junctio 99.8 9.5E-18 2.1E-22 171.4 18.8 191 207-434 18-223 (328)
46 TIGR02880 cbbX_cfxQ probable R 99.8 1.9E-17 4.1E-22 165.7 16.7 177 213-415 20-218 (284)
47 CHL00181 cbbX CbbX; Provisiona 99.8 1.7E-17 3.6E-22 166.2 15.8 176 214-415 23-219 (287)
48 TIGR00635 ruvB Holliday juncti 99.8 3.5E-17 7.5E-22 165.3 18.2 185 212-433 2-201 (305)
49 PF05673 DUF815: Protein of un 99.7 1.8E-16 4E-21 152.3 20.6 180 199-413 12-215 (249)
50 PRK04195 replication factor C 99.7 2.8E-16 6E-21 168.6 19.1 172 201-414 3-182 (482)
51 TIGR00763 lon ATP-dependent pr 99.7 3.7E-16 7.9E-21 176.3 19.6 162 212-406 317-506 (775)
52 PRK14956 DNA polymerase III su 99.7 4.8E-16 1E-20 163.5 18.7 162 207-414 11-202 (484)
53 COG2255 RuvB Holliday junction 99.7 6.2E-16 1.3E-20 149.7 17.7 184 208-428 20-218 (332)
54 PRK14962 DNA polymerase III su 99.7 8.1E-16 1.8E-20 163.6 19.6 157 207-409 7-193 (472)
55 PRK07003 DNA polymerase III su 99.7 8.8E-16 1.9E-20 167.2 19.9 163 207-415 9-201 (830)
56 PRK12323 DNA polymerase III su 99.7 4.2E-16 9.1E-21 167.7 16.0 179 207-431 9-223 (700)
57 TIGR02639 ClpA ATP-dependent C 99.7 2.8E-16 6.2E-21 176.3 15.2 201 209-456 177-407 (731)
58 COG0466 Lon ATP-dependent Lon 99.7 1.5E-15 3.3E-20 162.4 18.4 159 215-406 324-509 (782)
59 COG2256 MGS1 ATPase related to 99.7 1.6E-15 3.5E-20 153.2 17.4 151 209-406 19-177 (436)
60 PRK14960 DNA polymerase III su 99.7 1.7E-15 3.7E-20 163.4 17.8 160 207-412 8-197 (702)
61 PRK14961 DNA polymerase III su 99.7 2.9E-15 6.4E-20 155.1 19.0 161 207-413 9-199 (363)
62 PLN03025 replication factor C 99.7 2.6E-15 5.6E-20 152.9 17.3 162 202-412 3-178 (319)
63 KOG2004 Mitochondrial ATP-depe 99.7 3.7E-15 8.1E-20 158.6 18.7 160 215-407 412-598 (906)
64 PHA02544 44 clamp loader, smal 99.6 7.8E-15 1.7E-19 148.9 19.9 158 200-405 9-173 (316)
65 PRK06645 DNA polymerase III su 99.6 6.5E-15 1.4E-19 157.4 19.0 164 201-412 10-207 (507)
66 TIGR03345 VI_ClpV1 type VI sec 99.6 3E-15 6.4E-20 169.6 17.2 201 209-457 182-413 (852)
67 PRK14964 DNA polymerase III su 99.6 5.3E-15 1.1E-19 157.0 18.0 160 207-412 6-195 (491)
68 PRK14958 DNA polymerase III su 99.6 5.1E-15 1.1E-19 159.0 17.0 160 207-412 9-198 (509)
69 TIGR03346 chaperone_ClpB ATP-d 99.6 2.4E-15 5.3E-20 171.2 15.0 201 209-457 168-399 (852)
70 PRK13342 recombination factor 99.6 1E-14 2.2E-19 153.7 18.2 151 207-407 5-166 (413)
71 PRK10865 protein disaggregatio 99.6 3.4E-15 7.3E-20 169.6 15.5 158 209-407 173-356 (857)
72 PRK07994 DNA polymerase III su 99.6 1.1E-14 2.3E-19 159.0 18.8 160 207-412 9-198 (647)
73 PRK14949 DNA polymerase III su 99.6 9E-15 2E-19 162.1 18.3 160 207-412 9-198 (944)
74 PRK05563 DNA polymerase III su 99.6 1.6E-14 3.5E-19 157.0 19.2 161 207-413 9-199 (559)
75 TIGR02397 dnaX_nterm DNA polym 99.6 1.6E-14 3.6E-19 148.7 17.9 162 207-414 7-198 (355)
76 PRK08691 DNA polymerase III su 99.6 9.4E-15 2E-19 159.0 16.6 161 207-413 9-199 (709)
77 PRK14963 DNA polymerase III su 99.6 2.5E-14 5.4E-19 153.4 19.5 160 207-412 7-195 (504)
78 PRK14951 DNA polymerase III su 99.6 2E-14 4.2E-19 156.6 17.9 161 207-413 9-204 (618)
79 PRK05896 DNA polymerase III su 99.6 2.2E-14 4.8E-19 154.6 17.7 158 207-410 9-196 (605)
80 PRK07764 DNA polymerase III su 99.6 2.7E-14 5.9E-19 160.3 18.9 160 207-412 8-199 (824)
81 PRK14952 DNA polymerase III su 99.6 2.8E-14 6.2E-19 154.7 18.5 163 207-415 6-200 (584)
82 PRK07133 DNA polymerase III su 99.6 3.1E-14 6.8E-19 156.2 18.7 158 207-410 11-195 (725)
83 PRK06893 DNA replication initi 99.6 2.7E-14 5.9E-19 138.6 16.1 174 206-419 8-188 (229)
84 PRK14957 DNA polymerase III su 99.6 4.1E-14 8.9E-19 152.2 18.9 160 207-412 9-198 (546)
85 PRK14970 DNA polymerase III su 99.6 6.5E-14 1.4E-18 145.3 19.7 160 207-412 10-187 (367)
86 PRK06305 DNA polymerase III su 99.6 1.2E-13 2.6E-18 146.6 21.6 158 207-410 10-198 (451)
87 PRK14969 DNA polymerase III su 99.6 2.5E-14 5.5E-19 154.5 16.6 160 207-412 9-198 (527)
88 PRK14959 DNA polymerase III su 99.6 4.5E-14 9.9E-19 152.9 18.3 163 207-415 9-201 (624)
89 PRK11034 clpA ATP-dependent Cl 99.6 9E-15 1.9E-19 163.1 13.2 198 212-456 184-411 (758)
90 TIGR02928 orc1/cdc6 family rep 99.6 2.6E-13 5.6E-18 140.4 22.7 210 214-469 15-269 (365)
91 PRK07940 DNA polymerase III su 99.6 2E-13 4.3E-18 142.2 21.1 155 212-403 3-187 (394)
92 PRK14965 DNA polymerase III su 99.6 4.8E-14 1E-18 153.9 17.1 160 207-412 9-198 (576)
93 TIGR02902 spore_lonB ATP-depen 99.6 5.1E-14 1.1E-18 152.4 16.6 187 201-432 54-303 (531)
94 PTZ00112 origin recognition co 99.6 2.6E-13 5.5E-18 148.8 21.8 225 214-488 755-1020(1164)
95 COG2607 Predicted ATPase (AAA+ 99.6 3.4E-13 7.4E-18 127.9 19.8 179 200-413 46-247 (287)
96 KOG0735 AAA+-type ATPase [Post 99.6 3.6E-14 7.7E-19 151.0 14.1 196 214-434 408-617 (952)
97 PRK14953 DNA polymerase III su 99.6 1.2E-13 2.6E-18 147.6 18.2 160 207-412 9-198 (486)
98 PRK08451 DNA polymerase III su 99.6 1.6E-13 3.4E-18 147.1 19.0 160 207-412 7-196 (535)
99 PRK12402 replication factor C 99.5 1.5E-13 3.3E-18 140.3 18.0 163 201-412 4-204 (337)
100 PRK14955 DNA polymerase III su 99.5 9.2E-14 2E-18 145.6 16.0 158 207-410 9-204 (397)
101 PRK09111 DNA polymerase III su 99.5 2E-13 4.4E-18 148.8 18.9 161 207-413 17-212 (598)
102 PRK06647 DNA polymerase III su 99.5 1.9E-13 4.1E-18 148.3 18.4 160 207-412 9-198 (563)
103 PRK10787 DNA-binding ATP-depen 99.5 1E-13 2.2E-18 155.7 16.7 161 212-406 319-507 (784)
104 CHL00095 clpC Clp protease ATP 99.5 7E-14 1.5E-18 158.8 15.8 201 210-458 175-405 (821)
105 TIGR03420 DnaA_homol_Hda DnaA 99.5 1.6E-13 3.5E-18 132.3 15.7 166 207-415 8-182 (226)
106 KOG0989 Replication factor C, 99.5 8.2E-14 1.8E-18 136.4 13.4 166 201-415 25-211 (346)
107 PRK14954 DNA polymerase III su 99.5 3.1E-13 6.8E-18 147.6 18.8 158 207-410 9-204 (620)
108 PRK05342 clpX ATP-dependent pr 99.5 2.9E-13 6.3E-18 141.7 17.0 177 212-403 68-323 (412)
109 PRK14950 DNA polymerase III su 99.5 4.7E-13 1E-17 146.7 18.8 160 207-412 9-199 (585)
110 PRK14948 DNA polymerase III su 99.5 5.7E-13 1.2E-17 146.2 19.1 157 207-409 9-197 (620)
111 PRK00411 cdc6 cell division co 99.5 2.7E-12 5.8E-17 134.3 23.1 199 214-459 30-267 (394)
112 PRK14971 DNA polymerase III su 99.5 5.6E-13 1.2E-17 146.2 18.4 161 207-413 10-201 (614)
113 PRK00440 rfc replication facto 99.5 8.4E-13 1.8E-17 133.7 18.4 164 200-412 5-181 (319)
114 PRK13341 recombination factor 99.5 4.6E-13 1E-17 148.8 17.6 157 201-406 17-182 (725)
115 TIGR02640 gas_vesic_GvpN gas v 99.5 4.3E-13 9.3E-18 132.9 15.4 129 248-406 21-199 (262)
116 PRK00149 dnaA chromosomal repl 99.5 5.3E-13 1.2E-17 142.2 17.1 192 207-435 115-324 (450)
117 KOG0736 Peroxisome assembly fa 99.5 3.5E-13 7.6E-18 144.8 15.4 171 245-435 428-607 (953)
118 PRK08903 DnaA regulatory inact 99.5 7.1E-13 1.5E-17 128.3 16.1 165 207-418 11-183 (227)
119 TIGR00362 DnaA chromosomal rep 99.5 8.7E-13 1.9E-17 138.7 17.5 191 207-435 103-312 (405)
120 PRK11034 clpA ATP-dependent Cl 99.5 3.9E-13 8.6E-18 150.0 15.7 157 215-406 459-667 (758)
121 PRK08727 hypothetical protein; 99.5 2.1E-12 4.6E-17 125.8 18.4 166 207-416 12-186 (233)
122 TIGR00382 clpX endopeptidase C 99.5 8.7E-13 1.9E-17 137.5 16.6 178 212-404 74-330 (413)
123 PRK08084 DNA replication initi 99.5 1.3E-12 2.9E-17 127.3 16.7 171 207-418 15-193 (235)
124 COG1474 CDC6 Cdc6-related prot 99.4 3.8E-12 8.2E-17 131.4 18.7 224 216-487 19-278 (366)
125 PRK14086 dnaA chromosomal repl 99.4 2.7E-12 5.8E-17 138.7 17.7 190 208-435 282-490 (617)
126 TIGR02639 ClpA ATP-dependent C 99.4 2.9E-12 6.3E-17 144.1 17.0 154 215-406 455-663 (731)
127 COG2812 DnaX DNA polymerase II 99.4 2.2E-12 4.7E-17 137.0 14.2 161 208-414 10-200 (515)
128 TIGR02903 spore_lon_C ATP-depe 99.4 6.5E-12 1.4E-16 138.2 18.2 171 208-421 148-382 (615)
129 PRK05642 DNA replication initi 99.4 7.2E-12 1.6E-16 122.1 16.1 160 207-406 12-180 (234)
130 PRK12422 chromosomal replicati 99.4 6.2E-12 1.4E-16 133.2 16.3 156 249-434 142-314 (445)
131 cd00009 AAA The AAA+ (ATPases 99.4 6.8E-12 1.5E-16 110.4 13.6 116 247-391 18-151 (151)
132 KOG2028 ATPase related to the 99.4 8.7E-12 1.9E-16 124.4 15.6 149 209-403 133-292 (554)
133 PRK14088 dnaA chromosomal repl 99.4 1.2E-11 2.5E-16 131.3 17.4 191 207-435 98-307 (440)
134 PRK07471 DNA polymerase III su 99.4 6.9E-11 1.5E-15 122.2 22.2 152 208-405 13-213 (365)
135 KOG1969 DNA replication checkp 99.4 3.9E-11 8.4E-16 128.8 20.7 176 201-406 260-482 (877)
136 PRK09112 DNA polymerase III su 99.4 4.9E-11 1.1E-15 122.7 20.3 180 208-434 17-241 (351)
137 PRK05564 DNA polymerase III su 99.4 1.1E-10 2.3E-15 118.7 21.9 148 212-405 2-165 (313)
138 TIGR01650 PD_CobS cobaltochela 99.3 4.1E-12 8.8E-17 128.1 11.2 133 247-405 63-233 (327)
139 PF07728 AAA_5: AAA domain (dy 99.3 1.5E-12 3.3E-17 116.1 6.6 105 250-383 1-139 (139)
140 PRK06620 hypothetical protein; 99.3 2.5E-11 5.4E-16 116.7 15.5 159 209-419 11-174 (214)
141 COG0464 SpoVK ATPases of the A 99.3 1.1E-11 2.3E-16 133.7 14.5 182 234-435 4-194 (494)
142 PRK13407 bchI magnesium chelat 99.3 3.8E-11 8.3E-16 122.4 17.4 156 209-406 3-217 (334)
143 PF00308 Bac_DnaA: Bacterial d 99.3 1.8E-11 3.9E-16 118.1 13.1 188 210-434 4-209 (219)
144 COG0714 MoxR-like ATPases [Gen 99.3 2.8E-11 6.1E-16 123.8 14.6 130 248-406 43-204 (329)
145 COG0542 clpA ATP-binding subun 99.3 3.5E-11 7.7E-16 132.4 15.7 203 212-459 168-398 (786)
146 PHA02244 ATPase-like protein 99.3 2.6E-11 5.6E-16 123.7 13.5 121 248-396 119-265 (383)
147 PRK14087 dnaA chromosomal repl 99.3 3.9E-11 8.4E-16 127.5 15.3 188 210-435 111-321 (450)
148 CHL00081 chlI Mg-protoporyphyr 99.3 7.4E-11 1.6E-15 120.6 16.2 154 211-406 14-233 (350)
149 COG0542 clpA ATP-binding subun 99.3 5.7E-11 1.2E-15 130.8 16.4 156 214-406 491-706 (786)
150 PRK10865 protein disaggregatio 99.3 7.7E-11 1.7E-15 134.2 17.9 157 213-406 567-780 (857)
151 TIGR00678 holB DNA polymerase 99.3 8.9E-11 1.9E-15 110.3 15.3 124 247-404 13-167 (188)
152 TIGR00390 hslU ATP-dependent p 99.3 2.5E-11 5.5E-16 125.4 11.5 70 215-284 13-83 (441)
153 PRK05201 hslU ATP-dependent pr 99.3 2.1E-11 4.6E-16 126.1 10.9 70 215-284 16-86 (443)
154 TIGR03346 chaperone_ClpB ATP-d 99.2 1.7E-10 3.7E-15 131.8 18.3 157 213-406 564-777 (852)
155 TIGR02030 BchI-ChlI magnesium 99.2 4.4E-10 9.6E-15 114.8 19.4 153 212-406 2-220 (337)
156 CHL00095 clpC Clp protease ATP 99.2 1.2E-10 2.7E-15 132.5 16.3 155 214-406 509-733 (821)
157 TIGR03345 VI_ClpV1 type VI sec 99.2 1.8E-10 3.8E-15 131.0 17.2 154 214-406 566-781 (852)
158 PRK09087 hypothetical protein; 99.2 1.9E-10 4.1E-15 111.5 14.5 132 249-420 45-181 (226)
159 PRK08058 DNA polymerase III su 99.2 1.2E-09 2.7E-14 111.7 19.4 146 212-403 3-180 (329)
160 TIGR00602 rad24 checkpoint pro 99.2 4.2E-10 9.2E-15 123.2 15.8 206 200-451 72-328 (637)
161 PRK11331 5-methylcytosine-spec 99.2 3.3E-10 7.1E-15 118.5 13.7 156 213-396 174-363 (459)
162 PRK07399 DNA polymerase III su 99.2 1.2E-09 2.6E-14 110.8 17.4 174 212-434 2-222 (314)
163 PRK07952 DNA replication prote 99.2 2.1E-10 4.5E-15 112.2 11.2 99 207-312 65-175 (244)
164 PF07724 AAA_2: AAA domain (Cd 99.1 1E-10 2.2E-15 108.5 8.0 109 247-371 2-131 (171)
165 smart00763 AAA_PrkA PrkA AAA d 99.1 1.1E-09 2.5E-14 111.6 16.0 65 210-281 46-118 (361)
166 PRK05707 DNA polymerase III su 99.1 1.5E-09 3.4E-14 110.7 16.9 123 248-404 22-177 (328)
167 PRK08116 hypothetical protein; 99.1 5.4E-10 1.2E-14 111.0 12.1 149 211-394 82-251 (268)
168 smart00382 AAA ATPases associa 99.1 4.6E-10 1E-14 97.6 9.5 121 248-392 2-147 (148)
169 COG0470 HolB ATPase involved i 99.1 4.2E-09 9E-14 106.8 17.2 116 250-399 26-175 (325)
170 PRK12377 putative replication 99.1 1.1E-09 2.3E-14 107.4 11.2 94 211-311 71-175 (248)
171 COG1224 TIP49 DNA helicase TIP 99.0 1.5E-08 3.2E-13 101.5 19.1 65 212-284 37-103 (450)
172 TIGR02442 Cob-chelat-sub cobal 99.0 1.9E-09 4.1E-14 119.4 14.3 152 212-405 2-214 (633)
173 PRK06964 DNA polymerase III su 99.0 1.9E-08 4E-13 103.0 20.3 124 246-403 19-202 (342)
174 PF07726 AAA_3: ATPase family 99.0 2.3E-10 4.9E-15 99.9 4.5 105 250-383 1-129 (131)
175 PRK13531 regulatory ATPase Rav 99.0 1.7E-09 3.7E-14 114.0 11.9 129 247-404 38-193 (498)
176 PF13177 DNA_pol3_delta2: DNA 99.0 9.5E-09 2.1E-13 94.5 15.2 113 246-392 17-161 (162)
177 COG0593 DnaA ATPase involved i 99.0 1.2E-08 2.5E-13 105.9 17.2 191 207-435 80-288 (408)
178 PRK08939 primosomal protein Dn 99.0 1.7E-09 3.6E-14 109.4 10.5 97 210-311 123-229 (306)
179 PRK04132 replication factor C 99.0 6.2E-09 1.3E-13 116.9 15.8 125 251-409 567-706 (846)
180 PF01078 Mg_chelatase: Magnesi 99.0 2E-09 4.2E-14 101.9 9.9 140 212-395 1-205 (206)
181 PF06068 TIP49: TIP49 C-termin 99.0 1.3E-08 2.9E-13 103.2 15.8 72 341-420 293-376 (398)
182 smart00350 MCM minichromosome 99.0 5E-09 1.1E-13 113.3 13.7 127 250-406 238-401 (509)
183 KOG0991 Replication factor C, 99.0 5.1E-09 1.1E-13 99.3 11.1 192 201-454 16-222 (333)
184 COG1219 ClpX ATP-dependent pro 99.0 1.6E-08 3.4E-13 100.0 14.8 66 248-313 97-176 (408)
185 PRK08181 transposase; Validate 98.9 5.8E-09 1.3E-13 103.5 11.7 65 248-312 106-180 (269)
186 PF03215 Rad17: Rad17 cell cyc 98.9 2.3E-08 4.9E-13 107.7 16.7 209 198-452 5-269 (519)
187 KOG0741 AAA+-type ATPase [Post 98.9 8.7E-09 1.9E-13 107.4 12.4 136 248-403 538-684 (744)
188 PRK06090 DNA polymerase III su 98.9 1.7E-07 3.6E-12 95.2 20.5 124 246-403 23-178 (319)
189 TIGR02031 BchD-ChlD magnesium 98.9 4.7E-08 1E-12 107.3 16.2 128 249-405 17-174 (589)
190 PRK11608 pspF phage shock prot 98.9 3.7E-08 7.9E-13 100.8 14.2 154 212-406 4-195 (326)
191 PRK06871 DNA polymerase III su 98.8 8.8E-08 1.9E-12 97.4 16.5 123 247-403 23-177 (325)
192 TIGR01817 nifA Nif-specific re 98.8 5.2E-08 1.1E-12 106.2 15.9 156 210-406 192-385 (534)
193 PF00158 Sigma54_activat: Sigm 98.8 3.8E-08 8.3E-13 91.0 12.3 85 217-312 2-106 (168)
194 PRK11388 DNA-binding transcrip 98.8 6.8E-08 1.5E-12 107.5 16.4 91 211-312 322-429 (638)
195 PRK08769 DNA polymerase III su 98.8 2.5E-07 5.5E-12 93.9 18.9 124 246-403 24-183 (319)
196 PF01695 IstB_IS21: IstB-like 98.8 2.1E-09 4.5E-14 100.5 3.4 64 248-311 47-120 (178)
197 PRK07993 DNA polymerase III su 98.8 1.3E-07 2.8E-12 96.8 16.0 123 247-403 23-178 (334)
198 PRK06835 DNA replication prote 98.8 2.7E-08 5.9E-13 101.5 10.9 64 248-311 183-258 (329)
199 COG1484 DnaC DNA replication p 98.8 2.9E-08 6.3E-13 97.9 10.8 92 212-311 77-179 (254)
200 PF12775 AAA_7: P-loop contain 98.8 2E-08 4.3E-13 100.0 9.5 134 248-406 33-194 (272)
201 TIGR02974 phageshock_pspF psp 98.8 4.9E-08 1.1E-12 99.9 12.3 149 217-406 2-188 (329)
202 PRK06526 transposase; Provisio 98.8 7.6E-09 1.6E-13 102.0 5.8 64 248-311 98-171 (254)
203 KOG0745 Putative ATP-dependent 98.8 2.7E-08 5.9E-13 101.7 9.5 65 248-312 226-304 (564)
204 KOG1942 DNA helicase, TBP-inte 98.7 8.9E-07 1.9E-11 86.8 18.6 64 213-284 37-102 (456)
205 PRK08699 DNA polymerase III su 98.7 1.1E-07 2.4E-12 97.0 12.8 123 246-402 19-182 (325)
206 PRK10820 DNA-binding transcrip 98.7 3.7E-07 8E-12 99.1 17.4 157 209-406 199-393 (520)
207 TIGR03015 pepcterm_ATPase puta 98.7 2.4E-07 5.1E-12 91.7 13.4 128 249-406 44-206 (269)
208 PRK06921 hypothetical protein; 98.7 1.2E-07 2.7E-12 94.1 11.0 63 248-310 117-188 (266)
209 PRK15424 propionate catabolism 98.7 3.9E-07 8.6E-12 98.6 15.3 90 211-312 216-335 (538)
210 TIGR02329 propionate_PrpR prop 98.7 1.9E-07 4.1E-12 101.0 12.8 158 209-407 207-403 (526)
211 TIGR00368 Mg chelatase-related 98.7 1E-07 2.3E-12 102.3 10.6 143 211-397 189-396 (499)
212 PF01637 Arch_ATPase: Archaeal 98.6 6.1E-07 1.3E-11 85.8 14.6 158 248-432 20-233 (234)
213 PRK09862 putative ATP-dependen 98.6 1.2E-07 2.6E-12 101.6 9.7 141 212-396 189-392 (506)
214 PF13173 AAA_14: AAA domain 98.6 2.6E-07 5.5E-12 81.4 9.5 64 248-311 2-73 (128)
215 PRK09183 transposase/IS protei 98.6 1.1E-07 2.3E-12 94.3 7.6 64 248-311 102-176 (259)
216 PRK05022 anaerobic nitric oxid 98.6 2.2E-06 4.8E-11 93.0 18.4 89 212-312 185-294 (509)
217 PF14532 Sigma54_activ_2: Sigm 98.6 8.9E-08 1.9E-12 85.5 6.2 59 248-312 21-82 (138)
218 COG1221 PspF Transcriptional r 98.6 2.7E-07 5.9E-12 95.5 10.3 158 210-407 74-266 (403)
219 PF12774 AAA_6: Hydrolytic ATP 98.6 6.9E-07 1.5E-11 86.8 12.6 66 247-312 31-97 (231)
220 PF00910 RNA_helicase: RNA hel 98.6 8.2E-08 1.8E-12 82.0 5.2 62 251-312 1-62 (107)
221 PRK15429 formate hydrogenlyase 98.6 1.9E-06 4.1E-11 96.8 17.4 90 211-312 373-483 (686)
222 KOG0990 Replication factor C, 98.5 3.3E-07 7.1E-12 91.0 9.8 164 199-411 28-209 (360)
223 KOG1051 Chaperone HSP104 and r 98.5 3.7E-06 8E-11 94.5 18.6 122 215-369 563-710 (898)
224 COG1220 HslU ATP-dependent pro 98.5 1.1E-06 2.3E-11 87.9 12.7 70 215-284 16-86 (444)
225 COG1239 ChlI Mg-chelatase subu 98.5 7.2E-07 1.6E-11 91.9 10.9 156 210-407 13-234 (423)
226 KOG1970 Checkpoint RAD17-RFC c 98.5 4.6E-06 9.9E-11 88.1 16.9 75 198-280 68-142 (634)
227 KOG2035 Replication factor C, 98.5 2.8E-06 6E-11 82.9 13.6 164 207-417 6-211 (351)
228 PF13401 AAA_22: AAA domain; P 98.5 6.4E-07 1.4E-11 78.4 8.4 65 248-312 4-100 (131)
229 PRK05818 DNA polymerase III su 98.5 7.5E-06 1.6E-10 80.3 16.4 113 246-392 5-147 (261)
230 PRK05917 DNA polymerase III su 98.4 1.2E-05 2.6E-10 80.4 17.5 112 247-392 18-154 (290)
231 PHA02624 large T antigen; Prov 98.4 9.2E-07 2E-11 95.3 10.0 125 244-391 427-561 (647)
232 PF05729 NACHT: NACHT domain 98.4 2.7E-06 5.8E-11 77.0 11.5 133 249-406 1-164 (166)
233 PTZ00111 DNA replication licen 98.4 1.4E-06 3.1E-11 97.9 11.2 127 250-405 494-657 (915)
234 TIGR00764 lon_rel lon-related 98.4 2.6E-06 5.6E-11 94.0 13.1 50 211-275 15-64 (608)
235 PRK07132 DNA polymerase III su 98.4 1.5E-05 3.3E-10 80.3 17.6 122 247-403 17-160 (299)
236 PRK07276 DNA polymerase III su 98.4 3.1E-05 6.8E-10 77.6 19.3 120 246-402 22-172 (290)
237 COG0606 Predicted ATPase with 98.4 4.6E-07 9.9E-12 94.6 6.2 48 210-272 175-222 (490)
238 PF03969 AFG1_ATPase: AFG1-lik 98.4 9E-07 2E-11 91.5 8.0 96 245-370 59-168 (362)
239 KOG1514 Origin recognition com 98.3 2.5E-05 5.4E-10 84.7 17.3 171 249-459 423-633 (767)
240 PF05621 TniB: Bacterial TniB 98.3 1.1E-05 2.5E-10 80.4 13.6 179 224-435 43-263 (302)
241 PRK10923 glnG nitrogen regulat 98.3 6E-06 1.3E-10 88.5 12.5 154 212-406 136-327 (469)
242 KOG2227 Pre-initiation complex 98.3 2.4E-05 5.3E-10 81.4 15.8 198 212-456 148-381 (529)
243 PF00931 NB-ARC: NB-ARC domain 98.3 1.8E-05 3.9E-10 78.8 14.4 148 246-430 17-199 (287)
244 TIGR02915 PEP_resp_reg putativ 98.2 2E-05 4.3E-10 83.9 14.6 88 213-312 138-246 (445)
245 cd01120 RecA-like_NTPases RecA 98.2 1.9E-05 4.2E-10 70.9 12.3 63 251-313 2-99 (165)
246 PHA02774 E1; Provisional 98.2 1.2E-05 2.6E-10 86.4 12.3 58 244-308 430-488 (613)
247 TIGR01818 ntrC nitrogen regula 98.2 1.5E-05 3.3E-10 85.1 12.8 152 214-406 134-323 (463)
248 KOG1968 Replication factor C, 98.2 9.1E-06 2E-10 91.9 11.3 187 200-420 308-518 (871)
249 PRK11361 acetoacetate metaboli 98.1 2E-05 4.4E-10 84.1 12.6 64 248-312 166-250 (457)
250 PRK13406 bchD magnesium chelat 98.1 2E-05 4.3E-10 86.3 12.6 120 249-397 26-174 (584)
251 PLN03210 Resistant to P. syrin 98.1 3.1E-05 6.7E-10 92.0 15.1 57 207-274 177-233 (1153)
252 PHA00729 NTP-binding motif con 98.1 4.2E-06 9.1E-11 80.6 5.9 29 249-277 18-46 (226)
253 COG3829 RocR Transcriptional r 98.1 8.1E-05 1.8E-09 79.1 15.6 93 207-311 238-352 (560)
254 KOG1051 Chaperone HSP104 and r 98.1 2.2E-05 4.8E-10 88.4 11.7 149 213-402 185-360 (898)
255 KOG2680 DNA helicase TIP49, TB 98.0 0.00012 2.6E-09 72.3 14.2 58 361-421 318-387 (454)
256 PRK15115 response regulator Gl 98.0 3.7E-05 8E-10 81.8 11.5 64 248-312 157-241 (444)
257 KOG2170 ATPase of the AAA+ sup 98.0 2E-05 4.4E-10 77.8 7.9 91 215-311 83-190 (344)
258 COG5271 MDN1 AAA ATPase contai 98.0 5.4E-05 1.2E-09 87.8 12.1 125 248-406 1543-1704(4600)
259 PF08740 BCS1_N: BCS1 N termin 98.0 0.00034 7.4E-09 65.6 15.8 138 59-216 27-187 (187)
260 TIGR02237 recomb_radB DNA repa 98.0 5.2E-05 1.1E-09 72.2 10.4 40 244-283 8-50 (209)
261 PF13207 AAA_17: AAA domain; P 98.0 6.9E-06 1.5E-10 71.0 3.8 31 251-281 2-32 (121)
262 PRK10365 transcriptional regul 97.9 7.1E-05 1.5E-09 79.4 11.9 64 248-312 162-246 (441)
263 PRK15455 PrkA family serine pr 97.9 1.9E-05 4.2E-10 84.9 7.1 68 207-281 69-137 (644)
264 PF05707 Zot: Zonular occluden 97.9 4.8E-05 1E-09 71.9 9.0 114 251-392 3-146 (193)
265 TIGR01618 phage_P_loop phage n 97.9 2.5E-05 5.5E-10 75.2 6.8 64 248-313 12-95 (220)
266 KOG0478 DNA replication licens 97.9 9.7E-05 2.1E-09 79.9 11.5 159 215-404 430-625 (804)
267 PF10443 RNA12: RNA12 protein; 97.8 0.00064 1.4E-08 70.9 16.4 89 362-452 186-300 (431)
268 PRK00131 aroK shikimate kinase 97.8 1.9E-05 4.2E-10 72.4 4.7 35 246-280 2-36 (175)
269 PF00493 MCM: MCM2/3/5 family 97.8 1.1E-05 2.3E-10 82.8 3.2 129 250-407 59-223 (331)
270 PRK07261 topology modulation p 97.8 4.1E-05 8.8E-10 71.0 6.8 31 251-281 3-33 (171)
271 PF14516 AAA_35: AAA-like doma 97.8 0.00045 9.9E-09 70.9 15.0 134 248-406 31-215 (331)
272 PF13604 AAA_30: AAA domain; P 97.8 0.00038 8.2E-09 66.0 13.3 91 248-369 18-132 (196)
273 PRK14722 flhF flagellar biosyn 97.8 7.1E-05 1.5E-09 77.6 8.8 103 248-377 137-266 (374)
274 cd01124 KaiC KaiC is a circadi 97.8 0.00026 5.7E-09 65.8 11.2 31 251-281 2-35 (187)
275 COG1373 Predicted ATPase (AAA+ 97.7 0.00031 6.8E-09 73.8 12.8 134 241-409 31-184 (398)
276 PF06309 Torsin: Torsin; Inte 97.7 4.7E-05 1E-09 66.5 5.2 52 215-272 26-77 (127)
277 PRK05800 cobU adenosylcobinami 97.7 0.00016 3.6E-09 67.0 9.2 64 250-313 3-90 (170)
278 cd01394 radB RadB. The archaea 97.7 0.00025 5.5E-09 68.0 10.8 39 244-282 15-56 (218)
279 PRK09361 radB DNA repair and r 97.7 0.00014 3.1E-09 70.1 8.9 39 244-282 19-60 (225)
280 PRK08118 topology modulation p 97.7 3.3E-05 7.3E-10 71.3 3.9 32 250-281 3-34 (167)
281 PRK12723 flagellar biosynthesi 97.7 0.00054 1.2E-08 71.6 13.1 26 247-272 173-198 (388)
282 KOG2228 Origin recognition com 97.7 0.00034 7.3E-09 70.4 10.8 156 215-408 25-222 (408)
283 TIGR01069 mutS2 MutS2 family p 97.7 0.00022 4.8E-09 80.8 10.7 23 249-271 323-345 (771)
284 PRK00409 recombination and DNA 97.6 0.00025 5.3E-09 80.6 10.6 65 248-312 327-420 (782)
285 PF05272 VirE: Virulence-assoc 97.6 0.00029 6.2E-09 67.0 9.4 113 244-391 48-169 (198)
286 PRK06067 flagellar accessory p 97.6 0.0004 8.6E-09 67.5 10.5 38 244-281 21-61 (234)
287 COG2204 AtoC Response regulato 97.6 0.00045 9.9E-09 73.2 11.5 89 212-311 139-247 (464)
288 cd00544 CobU Adenosylcobinamid 97.6 0.00042 9.1E-09 64.2 9.9 63 251-313 2-87 (169)
289 COG1485 Predicted ATPase [Gene 97.6 0.00011 2.3E-09 74.4 6.2 95 245-369 62-170 (367)
290 COG1618 Predicted nucleotide k 97.6 0.00054 1.2E-08 62.2 10.0 25 248-272 5-29 (179)
291 cd00464 SK Shikimate kinase (S 97.6 6.7E-05 1.5E-09 67.5 4.2 31 250-280 1-31 (154)
292 PRK13947 shikimate kinase; Pro 97.6 7.1E-05 1.5E-09 68.8 4.4 32 250-281 3-34 (171)
293 PRK03839 putative kinase; Prov 97.6 6.7E-05 1.5E-09 69.8 4.0 30 251-280 3-32 (180)
294 PRK00771 signal recognition pa 97.6 0.0006 1.3E-08 72.3 11.5 63 221-284 69-134 (437)
295 cd03283 ABC_MutS-like MutS-lik 97.5 0.0003 6.6E-09 66.8 8.4 65 248-312 25-118 (199)
296 PF13671 AAA_33: AAA domain; P 97.5 5.1E-05 1.1E-09 67.4 2.8 28 251-278 2-29 (143)
297 PRK00625 shikimate kinase; Pro 97.5 8.3E-05 1.8E-09 69.1 4.3 31 250-280 2-32 (173)
298 cd01393 recA_like RecA is a b 97.5 0.00037 8E-09 67.0 8.9 40 244-283 15-63 (226)
299 PRK05973 replicative DNA helic 97.5 0.00087 1.9E-08 65.4 11.4 37 244-280 60-99 (237)
300 KOG0480 DNA replication licens 97.5 0.0022 4.7E-08 69.3 15.1 164 212-407 343-544 (764)
301 PRK13949 shikimate kinase; Pro 97.5 8.8E-05 1.9E-09 68.7 4.1 31 250-280 3-33 (169)
302 TIGR02688 conserved hypothetic 97.5 0.0013 2.9E-08 68.7 13.1 60 248-311 209-272 (449)
303 TIGR02012 tigrfam_recA protein 97.5 0.00041 8.8E-09 70.6 9.1 70 244-313 51-147 (321)
304 PTZ00202 tuzin; Provisional 97.5 0.011 2.4E-07 62.2 19.3 77 210-298 258-334 (550)
305 COG3604 FhlA Transcriptional r 97.5 0.00055 1.2E-08 72.1 9.9 90 211-311 220-329 (550)
306 PRK08533 flagellar accessory p 97.5 0.00087 1.9E-08 65.2 10.8 37 244-280 20-59 (230)
307 COG1241 MCM2 Predicted ATPase 97.5 0.00041 8.9E-09 76.6 9.3 63 250-312 321-396 (682)
308 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00055 1.2E-08 66.3 9.3 40 244-283 15-63 (235)
309 COG0703 AroK Shikimate kinase 97.5 9.8E-05 2.1E-09 68.1 3.6 32 249-280 3-34 (172)
310 PRK08154 anaerobic benzoate ca 97.4 0.00029 6.2E-09 71.7 7.2 58 218-280 108-165 (309)
311 PF03266 NTPase_1: NTPase; In 97.4 0.00034 7.4E-09 64.7 6.8 23 250-272 1-23 (168)
312 PRK13948 shikimate kinase; Pro 97.4 0.00018 3.9E-09 67.5 4.9 35 246-280 8-42 (182)
313 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00015 3.3E-09 67.3 4.2 29 251-279 2-30 (183)
314 PRK09376 rho transcription ter 97.4 0.0012 2.7E-08 68.4 11.1 24 251-274 172-195 (416)
315 PRK06581 DNA polymerase III su 97.4 0.0038 8.2E-08 60.7 13.6 126 248-407 15-163 (263)
316 COG5245 DYN1 Dynein, heavy cha 97.4 0.00054 1.2E-08 79.4 9.0 139 246-406 1492-1659(3164)
317 cd03281 ABC_MSH5_euk MutS5 hom 97.4 0.00071 1.5E-08 65.0 8.7 65 248-312 29-121 (213)
318 cd00983 recA RecA is a bacter 97.4 0.00067 1.5E-08 69.1 8.9 70 244-313 51-147 (325)
319 PRK06217 hypothetical protein; 97.4 0.00017 3.8E-09 67.3 4.3 31 250-280 3-33 (183)
320 PF06745 KaiC: KaiC; InterPro 97.4 0.00093 2E-08 64.5 9.4 38 244-281 15-56 (226)
321 cd02021 GntK Gluconate kinase 97.4 0.00017 3.6E-09 64.9 4.0 29 251-279 2-30 (150)
322 PRK14532 adenylate kinase; Pro 97.4 0.00018 3.8E-09 67.4 4.2 30 250-279 2-31 (188)
323 PF00519 PPV_E1_C: Papillomavi 97.4 0.00064 1.4E-08 69.8 8.5 62 244-311 258-319 (432)
324 PRK14531 adenylate kinase; Pro 97.4 0.0002 4.4E-09 66.9 4.6 32 248-279 2-33 (183)
325 TIGR03499 FlhF flagellar biosy 97.4 0.00085 1.9E-08 67.3 9.3 36 248-283 194-234 (282)
326 COG4619 ABC-type uncharacteriz 97.3 0.00069 1.5E-08 62.0 7.5 25 248-272 29-53 (223)
327 cd01128 rho_factor Transcripti 97.3 0.0022 4.7E-08 63.2 11.7 28 247-274 15-42 (249)
328 TIGR00767 rho transcription te 97.3 0.0019 4.2E-08 67.3 11.8 26 248-273 168-193 (415)
329 PRK04841 transcriptional regul 97.3 0.0063 1.4E-07 70.5 17.4 34 248-282 32-65 (903)
330 TIGR01313 therm_gnt_kin carboh 97.3 0.00018 3.9E-09 65.7 3.7 28 251-278 1-28 (163)
331 KOG3347 Predicted nucleotide k 97.3 0.00019 4.2E-09 64.1 3.7 41 248-290 7-47 (176)
332 cd02020 CMPK Cytidine monophos 97.3 0.0002 4.4E-09 63.6 4.0 30 251-280 2-31 (147)
333 PRK13765 ATP-dependent proteas 97.3 0.00045 9.7E-09 76.5 7.4 52 208-274 25-76 (637)
334 PRK13946 shikimate kinase; Pro 97.3 0.0002 4.4E-09 67.0 4.1 35 247-281 9-43 (184)
335 PF00437 T2SE: Type II/IV secr 97.3 0.00061 1.3E-08 67.7 7.7 91 209-310 99-208 (270)
336 PRK05057 aroK shikimate kinase 97.3 0.00025 5.5E-09 65.8 4.6 34 248-281 4-37 (172)
337 PF13479 AAA_24: AAA domain 97.3 0.00059 1.3E-08 65.5 7.2 62 249-313 4-82 (213)
338 cd01428 ADK Adenylate kinase ( 97.3 0.00023 5E-09 66.6 4.1 29 251-279 2-30 (194)
339 PRK11823 DNA repair protein Ra 97.3 0.00096 2.1E-08 71.2 9.0 70 244-313 76-170 (446)
340 PF13191 AAA_16: AAA ATPase do 97.3 0.00015 3.2E-09 67.0 2.5 37 248-284 24-63 (185)
341 PRK12608 transcription termina 97.3 0.0024 5.3E-08 66.0 11.5 25 250-274 135-159 (380)
342 TIGR00150 HI0065_YjeE ATPase, 97.3 0.0011 2.4E-08 58.9 7.8 30 246-275 20-49 (133)
343 COG1855 ATPase (PilT family) [ 97.3 0.00046 1E-08 71.7 6.1 106 148-274 169-289 (604)
344 PRK03731 aroL shikimate kinase 97.3 0.00031 6.8E-09 64.6 4.5 31 250-280 4-34 (171)
345 cd01121 Sms Sms (bacterial rad 97.2 0.003 6.6E-08 65.8 12.1 69 244-312 78-171 (372)
346 PF13086 AAA_11: AAA domain; P 97.2 0.00028 6.1E-09 67.3 4.2 22 251-272 20-41 (236)
347 PRK11889 flhF flagellar biosyn 97.2 0.0046 9.9E-08 64.4 13.0 57 221-281 218-277 (436)
348 cd03243 ABC_MutS_homologs The 97.2 0.0015 3.1E-08 62.1 8.7 65 248-312 29-121 (202)
349 PRK06762 hypothetical protein; 97.2 0.00041 9E-09 63.5 4.8 33 248-280 2-34 (166)
350 PRK14530 adenylate kinase; Pro 97.2 0.00037 7.9E-09 66.9 4.5 31 249-279 4-34 (215)
351 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.0012 2.6E-08 65.4 8.1 39 244-282 32-73 (259)
352 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.00091 2E-08 60.7 6.7 28 246-273 23-50 (157)
353 smart00072 GuKc Guanylate kina 97.2 0.0014 3E-08 61.4 7.8 25 248-272 2-26 (184)
354 PF13245 AAA_19: Part of AAA d 97.2 0.00068 1.5E-08 54.2 4.9 33 250-282 12-51 (76)
355 PF07693 KAP_NTPase: KAP famil 97.1 0.0065 1.4E-07 61.6 13.3 30 246-275 18-47 (325)
356 PRK05703 flhF flagellar biosyn 97.1 0.0057 1.2E-07 64.9 13.2 36 248-283 221-261 (424)
357 PRK06547 hypothetical protein; 97.1 0.00057 1.2E-08 63.5 4.9 35 246-280 13-47 (172)
358 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.0015 3.2E-08 62.0 7.9 21 249-269 29-49 (200)
359 PRK02496 adk adenylate kinase; 97.1 0.00041 8.9E-09 64.7 3.9 29 251-279 4-32 (184)
360 COG3283 TyrR Transcriptional r 97.1 0.0034 7.3E-08 63.8 10.5 101 201-312 191-306 (511)
361 PRK14528 adenylate kinase; Pro 97.1 0.00049 1.1E-08 64.7 4.3 30 250-279 3-32 (186)
362 PF06431 Polyoma_lg_T_C: Polyo 97.1 0.0011 2.4E-08 67.4 7.1 139 222-391 137-285 (417)
363 COG1102 Cmk Cytidylate kinase 97.1 0.00043 9.3E-09 62.8 3.7 28 251-278 3-30 (179)
364 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00049 1.1E-08 64.0 4.2 31 249-279 4-34 (188)
365 cd00227 CPT Chloramphenicol (C 97.1 0.00047 1E-08 63.9 3.8 32 248-279 2-33 (175)
366 cd00046 DEXDc DEAD-like helica 97.1 0.003 6.5E-08 54.3 8.5 24 249-272 1-24 (144)
367 PF08298 AAA_PrkA: PrkA AAA do 97.1 0.0032 7E-08 64.4 9.8 66 212-284 58-125 (358)
368 PF10236 DAP3: Mitochondrial r 97.1 0.032 6.9E-07 56.7 17.2 99 300-408 157-280 (309)
369 PRK04296 thymidine kinase; Pro 97.1 0.0037 8E-08 58.9 9.7 30 250-279 4-36 (190)
370 PTZ00088 adenylate kinase 1; P 97.0 0.00058 1.3E-08 66.4 4.2 30 250-279 8-37 (229)
371 cd03216 ABC_Carb_Monos_I This 97.0 0.001 2.2E-08 61.0 5.7 28 245-272 23-50 (163)
372 PLN02200 adenylate kinase fami 97.0 0.00072 1.6E-08 66.0 4.9 30 248-277 43-72 (234)
373 cd03282 ABC_MSH4_euk MutS4 hom 97.0 0.0016 3.4E-08 62.2 7.1 64 248-311 29-120 (204)
374 COG1936 Predicted nucleotide k 97.0 0.0005 1.1E-08 63.1 3.3 30 250-280 2-31 (180)
375 TIGR01351 adk adenylate kinase 97.0 0.00061 1.3E-08 65.1 4.0 29 251-279 2-30 (210)
376 PRK09354 recA recombinase A; P 97.0 0.0027 5.9E-08 65.3 8.8 70 244-313 56-152 (349)
377 PF04665 Pox_A32: Poxvirus A32 97.0 0.018 3.9E-07 56.3 14.0 126 248-407 13-172 (241)
378 PRK00279 adk adenylate kinase; 97.0 0.00071 1.5E-08 64.9 4.2 29 251-279 3-31 (215)
379 cd02019 NK Nucleoside/nucleoti 97.0 0.0012 2.6E-08 51.6 4.7 29 251-279 2-31 (69)
380 TIGR01613 primase_Cterm phage/ 97.0 0.0034 7.4E-08 63.6 9.2 63 245-310 73-139 (304)
381 PRK14527 adenylate kinase; Pro 97.0 0.00066 1.4E-08 63.9 3.7 31 248-278 6-36 (191)
382 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0023 5E-08 57.5 7.0 67 246-313 24-102 (144)
383 COG4650 RtcR Sigma54-dependent 96.9 0.0021 4.4E-08 63.6 7.0 69 244-312 204-295 (531)
384 cd03287 ABC_MSH3_euk MutS3 hom 96.9 0.0032 6.9E-08 60.9 8.3 64 248-311 31-122 (222)
385 PRK13764 ATPase; Provisional 96.9 0.0021 4.6E-08 70.6 7.7 63 248-311 257-336 (602)
386 PRK06696 uridine kinase; Valid 96.9 0.0033 7.2E-08 60.7 8.4 38 248-285 22-62 (223)
387 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0046 9.9E-08 61.5 9.5 87 210-310 56-160 (264)
388 PRK04182 cytidylate kinase; Pr 96.9 0.00088 1.9E-08 61.7 4.0 29 250-278 2-30 (180)
389 TIGR01448 recD_rel helicase, p 96.9 0.0063 1.4E-07 68.8 11.5 63 249-311 339-428 (720)
390 PRK04040 adenylate kinase; Pro 96.9 0.001 2.2E-08 62.7 4.3 30 248-277 2-33 (188)
391 smart00534 MUTSac ATPase domai 96.9 0.0028 6.1E-08 59.4 7.3 62 251-312 2-91 (185)
392 KOG2543 Origin recognition com 96.9 0.0076 1.6E-07 61.8 10.6 130 246-404 28-192 (438)
393 TIGR02782 TrbB_P P-type conjug 96.9 0.0031 6.8E-08 63.8 8.0 25 248-272 132-156 (299)
394 PTZ00035 Rad51 protein; Provis 96.9 0.0057 1.2E-07 62.9 10.0 29 244-272 114-142 (337)
395 TIGR03263 guanyl_kin guanylate 96.9 0.0025 5.4E-08 59.0 6.6 26 249-274 2-27 (180)
396 PF01745 IPT: Isopentenyl tran 96.9 0.001 2.2E-08 63.2 4.0 35 250-284 3-37 (233)
397 PRK01184 hypothetical protein; 96.8 0.001 2.3E-08 61.9 4.0 29 250-279 3-31 (184)
398 cd01131 PilT Pilus retraction 96.8 0.0025 5.5E-08 60.4 6.6 24 250-273 3-26 (198)
399 PF13238 AAA_18: AAA domain; P 96.8 0.00079 1.7E-08 58.1 2.9 22 251-272 1-22 (129)
400 PF00406 ADK: Adenylate kinase 96.8 0.00076 1.7E-08 60.8 2.9 27 253-279 1-27 (151)
401 cd03284 ABC_MutS1 MutS1 homolo 96.8 0.0041 8.9E-08 59.9 8.2 61 249-309 31-119 (216)
402 PLN02199 shikimate kinase 96.8 0.0023 5E-08 64.1 6.4 33 248-280 102-134 (303)
403 PF08433 KTI12: Chromatin asso 96.8 0.0019 4.2E-08 64.3 5.8 61 251-311 4-82 (270)
404 COG1116 TauB ABC-type nitrate/ 96.8 0.0073 1.6E-07 58.8 9.5 25 248-272 29-53 (248)
405 TIGR02173 cyt_kin_arch cytidyl 96.8 0.0012 2.6E-08 60.3 4.0 29 251-279 3-31 (171)
406 PHA02530 pseT polynucleotide k 96.8 0.0012 2.6E-08 66.5 4.3 31 249-279 3-34 (300)
407 TIGR02858 spore_III_AA stage I 96.8 0.0043 9.3E-08 61.8 8.1 25 249-273 112-136 (270)
408 PF13521 AAA_28: AAA domain; P 96.8 0.001 2.2E-08 60.8 3.4 26 251-277 2-27 (163)
409 PF02367 UPF0079: Uncharacteri 96.8 0.0024 5.1E-08 55.9 5.4 66 246-311 13-100 (123)
410 smart00487 DEXDc DEAD-like hel 96.8 0.0049 1.1E-07 56.4 7.8 25 249-273 25-50 (201)
411 COG0563 Adk Adenylate kinase a 96.8 0.0014 3E-08 61.3 4.0 32 250-283 2-33 (178)
412 PRK14526 adenylate kinase; Pro 96.8 0.0014 3E-08 62.9 4.1 28 251-278 3-30 (211)
413 PF12780 AAA_8: P-loop contain 96.7 0.0073 1.6E-07 60.1 9.3 62 248-309 31-99 (268)
414 cd02027 APSK Adenosine 5'-phos 96.7 0.0018 3.8E-08 58.6 4.5 30 251-280 2-34 (149)
415 COG3854 SpoIIIAA ncharacterize 96.7 0.0042 9.2E-08 59.6 7.1 25 249-273 138-162 (308)
416 PRK12727 flagellar biosynthesi 96.7 0.0071 1.5E-07 65.2 9.7 64 247-310 349-439 (559)
417 KOG2383 Predicted ATPase [Gene 96.7 0.0062 1.3E-07 62.8 8.7 24 246-269 112-135 (467)
418 COG2874 FlaH Predicted ATPases 96.7 0.0067 1.5E-07 57.7 8.2 36 236-271 14-51 (235)
419 PRK12724 flagellar biosynthesi 96.7 0.024 5.2E-07 59.7 13.1 36 248-283 223-262 (432)
420 PRK10078 ribose 1,5-bisphospho 96.7 0.0016 3.4E-08 61.1 4.0 30 249-278 3-32 (186)
421 TIGR02525 plasmid_TraJ plasmid 96.7 0.0064 1.4E-07 63.3 8.7 24 249-272 150-173 (372)
422 TIGR00416 sms DNA repair prote 96.7 0.012 2.6E-07 63.0 11.0 69 244-312 90-183 (454)
423 PRK08233 hypothetical protein; 96.7 0.002 4.3E-08 59.5 4.5 32 249-280 4-36 (182)
424 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0062 1.4E-07 56.8 7.6 68 246-313 23-103 (177)
425 cd03247 ABCC_cytochrome_bd The 96.6 0.0096 2.1E-07 55.2 8.9 28 245-272 25-52 (178)
426 cd03246 ABCC_Protease_Secretio 96.6 0.0083 1.8E-07 55.4 8.4 27 246-272 26-52 (173)
427 TIGR02655 circ_KaiC circadian 96.6 0.008 1.7E-07 64.9 9.5 29 244-272 259-287 (484)
428 COG5271 MDN1 AAA ATPase contai 96.6 0.015 3.2E-07 68.9 11.5 130 250-406 890-1048(4600)
429 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0021 4.5E-08 63.1 4.4 31 251-281 2-35 (249)
430 COG3267 ExeA Type II secretory 96.6 0.066 1.4E-06 52.4 14.5 162 246-435 48-247 (269)
431 KOG0482 DNA replication licens 96.6 0.023 5E-07 60.2 11.8 139 250-408 377-542 (721)
432 COG0467 RAD55 RecA-superfamily 96.6 0.0033 7.1E-08 62.1 5.4 40 244-283 19-61 (260)
433 COG0529 CysC Adenylylsulfate k 96.5 0.0069 1.5E-07 55.9 6.9 37 248-284 23-62 (197)
434 cd02022 DPCK Dephospho-coenzym 96.5 0.0025 5.5E-08 59.3 4.2 30 251-281 2-31 (179)
435 PLN02674 adenylate kinase 96.5 0.0027 5.7E-08 62.3 4.4 31 248-278 31-61 (244)
436 PRK12339 2-phosphoglycerate ki 96.5 0.0029 6.3E-08 60.1 4.5 29 248-276 3-31 (197)
437 PRK05541 adenylylsulfate kinas 96.5 0.0034 7.3E-08 58.1 4.8 26 248-273 7-32 (176)
438 PRK09302 circadian clock prote 96.5 0.022 4.8E-07 61.9 11.9 121 244-389 27-199 (509)
439 TIGR02239 recomb_RAD51 DNA rep 96.5 0.0089 1.9E-07 61.0 8.1 27 244-270 92-118 (316)
440 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.004 8.7E-08 60.7 5.4 39 244-282 17-58 (237)
441 PF05970 PIF1: PIF1-like helic 96.5 0.011 2.3E-07 61.6 8.8 28 247-274 21-48 (364)
442 PRK14021 bifunctional shikimat 96.4 0.0031 6.7E-08 69.1 4.8 32 250-281 8-39 (542)
443 PRK00889 adenylylsulfate kinas 96.4 0.0042 9.1E-08 57.4 5.0 34 248-281 4-40 (175)
444 PLN02165 adenylate isopentenyl 96.4 0.0032 7E-08 64.2 4.4 35 248-282 43-77 (334)
445 TIGR02236 recomb_radA DNA repa 96.4 0.008 1.7E-07 61.0 7.3 40 244-283 91-139 (310)
446 cd03286 ABC_MSH6_euk MutS6 hom 96.4 0.0086 1.9E-07 57.8 7.1 63 248-310 30-120 (218)
447 PRK10646 ADP-binding protein; 96.4 0.015 3.2E-07 52.9 8.2 27 248-274 28-54 (153)
448 PF00448 SRP54: SRP54-type pro 96.4 0.0034 7.3E-08 59.6 4.2 49 248-296 1-54 (196)
449 PRK14529 adenylate kinase; Pro 96.4 0.0026 5.7E-08 61.5 3.4 28 251-278 3-30 (223)
450 cd03227 ABC_Class2 ABC-type Cl 96.4 0.011 2.3E-07 54.2 7.3 66 248-313 21-113 (162)
451 KOG3354 Gluconate kinase [Carb 96.4 0.0031 6.7E-08 56.9 3.5 46 246-293 10-55 (191)
452 cd04177 RSR1 RSR1 subgroup. R 96.4 0.016 3.5E-07 52.7 8.5 23 250-272 3-25 (168)
453 PRK13894 conjugal transfer ATP 96.4 0.012 2.7E-07 60.0 8.4 25 248-272 148-172 (319)
454 TIGR01425 SRP54_euk signal rec 96.4 0.16 3.5E-06 53.8 16.9 38 248-285 100-140 (429)
455 PLN02459 probable adenylate ki 96.4 0.0043 9.4E-08 61.2 4.8 30 250-279 31-60 (261)
456 TIGR01420 pilT_fam pilus retra 96.4 0.008 1.7E-07 62.0 7.0 26 248-273 122-147 (343)
457 TIGR02322 phosphon_PhnN phosph 96.4 0.0033 7.1E-08 58.3 3.7 25 250-274 3-27 (179)
458 cd01853 Toc34_like Toc34-like 96.3 0.044 9.6E-07 54.0 11.9 26 246-271 29-54 (249)
459 TIGR00064 ftsY signal recognit 96.3 0.01 2.2E-07 59.2 7.3 38 247-284 71-111 (272)
460 TIGR02238 recomb_DMC1 meiotic 96.3 0.013 2.7E-07 59.8 8.0 53 244-296 92-153 (313)
461 cd01863 Rab18 Rab18 subfamily. 96.3 0.015 3.3E-07 52.2 7.8 21 251-271 3-23 (161)
462 PRK12726 flagellar biosynthesi 96.3 0.0096 2.1E-07 61.8 7.1 38 247-284 205-245 (407)
463 cd04119 RJL RJL (RabJ-Like) su 96.3 0.018 3.8E-07 51.7 8.2 22 250-271 2-23 (168)
464 PRK09825 idnK D-gluconate kina 96.3 0.0081 1.8E-07 55.9 6.1 34 249-284 4-37 (176)
465 PRK12338 hypothetical protein; 96.3 0.004 8.6E-08 63.2 4.3 29 248-276 4-32 (319)
466 PRK13889 conjugal transfer rel 96.3 0.024 5.2E-07 65.9 11.0 62 250-311 364-445 (988)
467 TIGR02655 circ_KaiC circadian 96.3 0.0086 1.9E-07 64.7 7.0 51 244-296 17-71 (484)
468 PRK14730 coaE dephospho-CoA ki 96.3 0.0041 8.8E-08 58.9 4.0 31 250-280 3-33 (195)
469 TIGR02788 VirB11 P-type DNA tr 96.3 0.01 2.2E-07 60.3 7.1 29 245-273 141-169 (308)
470 PRK10416 signal recognition pa 96.3 0.0076 1.7E-07 61.5 6.2 36 247-282 113-151 (318)
471 cd03238 ABC_UvrA The excision 96.3 0.015 3.3E-07 54.2 7.7 25 246-270 19-43 (176)
472 TIGR02768 TraA_Ti Ti-type conj 96.3 0.012 2.6E-07 66.8 8.4 63 249-311 369-451 (744)
473 cd03214 ABC_Iron-Siderophores_ 96.3 0.011 2.3E-07 55.1 6.7 27 246-272 23-49 (180)
474 PRK04220 2-phosphoglycerate ki 96.3 0.01 2.2E-07 59.8 6.9 30 246-275 90-119 (301)
475 TIGR00959 ffh signal recogniti 96.3 0.071 1.5E-06 56.6 13.6 38 247-284 98-139 (428)
476 PRK12337 2-phosphoglycerate ki 96.3 0.012 2.5E-07 62.6 7.6 29 247-275 254-282 (475)
477 PF01583 APS_kinase: Adenylyls 96.3 0.0059 1.3E-07 55.7 4.7 36 249-284 3-41 (156)
478 PLN03187 meiotic recombination 96.2 0.012 2.5E-07 60.7 7.4 53 244-296 122-183 (344)
479 PRK13808 adenylate kinase; Pro 96.2 0.004 8.7E-08 63.6 4.0 29 251-279 3-31 (333)
480 smart00173 RAS Ras subfamily o 96.2 0.027 5.8E-07 50.7 9.1 21 251-271 3-23 (164)
481 cd01130 VirB11-like_ATPase Typ 96.2 0.0044 9.5E-08 58.1 3.9 26 248-273 25-50 (186)
482 TIGR02533 type_II_gspE general 96.2 0.022 4.8E-07 61.5 9.8 87 210-311 218-323 (486)
483 cd04159 Arl10_like Arl10-like 96.2 0.0082 1.8E-07 53.0 5.6 21 251-271 2-22 (159)
484 cd00984 DnaB_C DnaB helicase C 96.2 0.0064 1.4E-07 59.1 5.2 40 244-283 9-52 (242)
485 PRK04301 radA DNA repair and r 96.2 0.011 2.4E-07 60.3 7.1 40 244-283 98-146 (317)
486 PF06414 Zeta_toxin: Zeta toxi 96.2 0.0044 9.6E-08 58.7 3.9 39 246-284 13-52 (199)
487 PRK04328 hypothetical protein; 96.2 0.0069 1.5E-07 59.6 5.4 39 244-282 19-60 (249)
488 TIGR03881 KaiC_arch_4 KaiC dom 96.2 0.0068 1.5E-07 58.5 5.2 38 244-281 16-56 (229)
489 cd04145 M_R_Ras_like M-Ras/R-R 96.2 0.027 5.9E-07 50.5 8.9 22 250-271 4-25 (164)
490 PF00488 MutS_V: MutS domain V 96.2 0.018 4E-07 56.2 8.3 64 248-311 43-134 (235)
491 PRK11545 gntK gluconate kinase 96.2 0.0036 7.9E-08 57.5 3.2 27 254-280 1-27 (163)
492 TIGR02524 dot_icm_DotB Dot/Icm 96.2 0.0064 1.4E-07 63.1 5.3 25 248-272 134-158 (358)
493 PRK10436 hypothetical protein; 96.2 0.024 5.2E-07 60.7 9.8 88 210-311 194-299 (462)
494 PF09848 DUF2075: Uncharacteri 96.2 0.0092 2E-07 61.7 6.5 24 249-272 2-25 (352)
495 TIGR01447 recD exodeoxyribonuc 96.2 0.024 5.1E-07 62.6 9.9 24 249-272 161-184 (586)
496 PRK00300 gmk guanylate kinase; 96.2 0.0056 1.2E-07 57.9 4.5 27 247-273 4-30 (205)
497 PRK11174 cysteine/glutathione 96.2 0.0082 1.8E-07 66.3 6.4 28 245-272 373-400 (588)
498 PRK14737 gmk guanylate kinase; 96.2 0.005 1.1E-07 57.9 4.0 26 247-272 3-28 (186)
499 KOG0481 DNA replication licens 96.2 0.026 5.5E-07 59.9 9.4 63 250-312 366-441 (729)
500 PHA00350 putative assembly pro 96.2 0.014 3E-07 61.1 7.5 64 250-315 3-97 (399)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-102 Score=786.53 Aligned_cols=437 Identities=49% Similarity=0.835 Sum_probs=406.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhhccCCceEEEeeecCCccCcchhHHHHHHHhCCCCCcccc
Q 011286 13 TIMSVAASAAATFMLVQSFARHYLPHEVSAFIDVKLKNLIARFCNELTLLIEEYDDGLNQNKLFKAAKLYLEPKIPPYVK 92 (489)
Q Consensus 13 ~~~~~~~S~~a~~ml~~~~~~~~~P~~l~~~~~~~~~~l~~~~~~~~ti~I~e~~~~~~~N~~y~a~~~YL~t~~~~~~~ 92 (489)
++|+++||++|++|++|+|+++++|.+++.|+.+++++|++.+++|.++.|.|+ +|+.+||+|.|+|.||++++++.+.
T Consensus 2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~-~g~~~n~~~~aie~yl~~k~~~~~~ 80 (457)
T KOG0743|consen 2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQ-DGVFRNQLYVAIEVYLSSKSSAIAK 80 (457)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehh-ccchHHHHHHHHHHhhhccchhhhh
Confidence 468999999999999999999999999999999999999999999999999999 8899999999999999999999999
Q ss_pred ceeeeccCCCCceEEeccCCceEEeeecCeEEEEEEeecCCCCCccccccccccCCcceEEEEEeCCCChhHHHHhhhhH
Q 011286 93 RIKLNLAKKETNVSLSLEKNEEIVDVFNGVQLKWKFESKPDPEREVHNNQNYLVKSNITFFALRFHKKHKDTVLRTYIPH 172 (489)
Q Consensus 93 rl~~~~~~~~~~~~~~~~~~~~~~d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vl~~yl~~ 172 (489)
|++.+...+++++++.+++|++|.|+|+||+++|.+++..++...+. ....+.|+|+|+|+++|++.|+.+||+|
T Consensus 81 rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~-----~~~~~~r~~~L~f~k~~~e~V~~syl~~ 155 (457)
T KOG0743|consen 81 RLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFV-----EREREKRYFELTFHKKPRELVTLSYLPY 155 (457)
T ss_pred hhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCccccc-----ccCCcceEEEEEecCccHHHhHHhHHHH
Confidence 99999999999999999999999999999999999999876654332 3456889999999999999999999999
Q ss_pred HHhhhhhhhhccceEEEEeecCC----CCCCCCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCC
Q 011286 173 ILKKSKELSKKKKTLKLFTLFPY----RGDTEIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWK 248 (489)
Q Consensus 173 v~~~~~~~~~~~~~~~i~~~~~~----~~~~~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~ 248 (489)
+..++++|..+++.+++|++.+. ...+..|+++.++||+||++|+|++++|++|++||..|+++++||+++|++|+
T Consensus 156 v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK 235 (457)
T KOG0743|consen 156 VVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK 235 (457)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh
Confidence 99999999999999999999853 22477999999999999999999999999999999999999999999999999
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhccccc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDL 328 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~ 328 (489)
|||||||||||||||+++||||+|++++|+++++++..+++|++++..++++||||||||||.+..+.+.........
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~-- 313 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFE-- 313 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeeccccccccccccccccccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999987776654332110
Q ss_pred ccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC
Q 011286 329 YRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT 408 (489)
Q Consensus 329 ~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 408 (489)
.....+|||||||++||+||+||+++||||||||+++|||||+||||||+||+|++|++++++.|++|||+..
T Consensus 314 -------~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~ 386 (457)
T KOG0743|consen 314 -------GDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE 386 (457)
T ss_pred -------CCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC
Confidence 1246799999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C-CCChHhHHHHHhccCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhccccccc
Q 011286 409 E-HPLFLEVEELIEKVEVTPADVAEQLMRDE-VPKIALSGLIQFLQIKKRETGESKAT 464 (489)
Q Consensus 409 ~-~~l~~~i~~l~~~~~~spa~i~~~l~~~~-~~~~al~~l~~~l~~~~~~~~~~~~~ 464 (489)
+ |.++++|++++.++.+|||||++.||++. |++.|++.|+++++.++.+.+...+.
T Consensus 387 ~~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~~~~~ 444 (457)
T KOG0743|consen 387 EDHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRNKDDKE 444 (457)
T ss_pred CCcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhccchhh
Confidence 5 99999999999999999999999999887 89999999999999998765554433
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-43 Score=344.65 Aligned_cols=214 Identities=27% Similarity=0.340 Sum_probs=186.3
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~--- 284 (489)
.+..|++++.|.+++.++|.+.++.+|++|+.|.++|+.+|+|+|||||||||||.||+|+|++.+..|+.+..|.+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK 224 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK 224 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH
Confidence 34469999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ---CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 285 ---~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
++..-++.+|.-+ +.||||||||||++...+-..+ .+ +....++|+-+|||+|||+.+. +
T Consensus 225 YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~--t~-----------gDrEVQRTmleLL~qlDGFD~~--~ 289 (406)
T COG1222 225 YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG--TS-----------GDREVQRTMLELLNQLDGFDPR--G 289 (406)
T ss_pred HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCC--CC-----------chHHHHHHHHHHHHhccCCCCC--C
Confidence 4556677888655 5799999999999986433221 11 1466799999999999999764 6
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHhc
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLMR 436 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~~ 436 (489)
++=||++||+++.|||||+||||||++|+||+|+.++|.+|++.+.......-.-+++.++... ++|+|||..+|..
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictE 367 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTE 367 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999988866555555677777754 5999999999864
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-38 Score=331.29 Aligned_cols=209 Identities=26% Similarity=0.370 Sum_probs=186.4
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~---- 284 (489)
+..+|++++|.+++|+++.+.+.+++++++.|.++|+.+++|+|||||||||||++|+|+|++.+.+++.+.+.++
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~ 508 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKY 508 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHh
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred --CChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCc
Q 011286 285 --EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDE 360 (489)
Q Consensus 285 --~~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~ 360 (489)
+++..++++|.++. .||||||||||++...|+... .....+++++||++|||+... .+
T Consensus 509 vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~----------------~~v~~RVlsqLLtEmDG~e~~--k~ 570 (693)
T KOG0730|consen 509 VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS----------------SGVTDRVLSQLLTEMDGLEAL--KN 570 (693)
T ss_pred cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc----------------cchHHHHHHHHHHHccccccc--Cc
Confidence 57889999998875 499999999999987443111 345689999999999999654 57
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhccC-CCHHHHHHHHh
Q 011286 361 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVE-VTPADVAEQLM 435 (489)
Q Consensus 361 ~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~-~spa~i~~~l~ 435 (489)
++||++||+|+.||+||+||||||..|++|.|+.+.|.+|++.++......-.-++++|++.++ ||+|||.+.|.
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQ 646 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998665444567888888654 99999999986
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-38 Score=320.77 Aligned_cols=207 Identities=26% Similarity=0.364 Sum_probs=180.6
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~----- 284 (489)
..+|++|-|-++.|+++.+ +..||+.|..|.++|-..|+|+||.||||||||+||+|+|.+.+.|+|....+++
T Consensus 300 nv~F~dVkG~DEAK~ELeE-iVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEE-IVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHH-HHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 3479999999999999955 7789999999999999999999999999999999999999999999999999886
Q ss_pred -CChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCce
Q 011286 285 -EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDER 361 (489)
Q Consensus 285 -~~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ 361 (489)
.+..+++.+|..++ .||||||||||++...+...+. ...+.|+++||.+|||+... +++
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~----------------~y~kqTlNQLLvEmDGF~qN--eGi 440 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ----------------HYAKQTLNQLLVEMDGFKQN--EGI 440 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH----------------HHHHHHHHHHHHHhcCcCcC--Cce
Confidence 46789999998774 5999999999999875544332 25689999999999999765 569
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHh
Q 011286 362 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 362 iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 435 (489)
|||++||.|+.||+||+||||||+||.+|.||...|.+|++.|+..--+.-..+..-++.. .+||+||+++.+.
T Consensus 441 IvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVN 515 (752)
T KOG0734|consen 441 IVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVN 515 (752)
T ss_pred EEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999985544433344445554 4699999999875
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-36 Score=312.58 Aligned_cols=220 Identities=24% Similarity=0.339 Sum_probs=188.7
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~----- 284 (489)
-.+|+++.+.++++.++...|..+.++++.|+++|+..|.|+|||||||||||.||+|+||+.+.+|+.+...++
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYV 586 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYV 586 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHh
Confidence 469999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred -CChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCce
Q 011286 285 -EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDER 361 (489)
Q Consensus 285 -~~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ 361 (489)
+++..++++|.++. .||||||||||++.+.++... .....+++++||.+|||+... .++
T Consensus 587 GESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~----------------s~~s~RvvNqLLtElDGl~~R--~gV 648 (802)
T KOG0733|consen 587 GESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG----------------SSVSSRVVNQLLTELDGLEER--RGV 648 (802)
T ss_pred hhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC----------------chhHHHHHHHHHHHhcccccc--cce
Confidence 56788999998875 599999999999987544322 355689999999999999765 459
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChH--hHHHHHhc---cCCCHHHHHHHHhc
Q 011286 362 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL--EVEELIEK---VEVTPADVAEQLMR 436 (489)
Q Consensus 362 iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~--~i~~l~~~---~~~spa~i~~~l~~ 436 (489)
.||++||+||.+|||++||||||..++++.|+.++|..|++........++.+ ++++++.. .+||+||++.++.
T Consensus 649 ~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr- 727 (802)
T KOG0733|consen 649 YVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR- 727 (802)
T ss_pred EEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH-
Confidence 99999999999999999999999999999999999999999988754444433 45566653 3699999998874
Q ss_pred CCCHHHHHHHHHHHHH
Q 011286 437 DEVPKIALSGLIQFLQ 452 (489)
Q Consensus 437 ~~~~~~al~~l~~~l~ 452 (489)
++++-.|.+.+.
T Consensus 728 ----eAsi~AL~~~~~ 739 (802)
T KOG0733|consen 728 ----EASILALRESLF 739 (802)
T ss_pred ----HHHHHHHHHHHh
Confidence 445555555444
No 6
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-36 Score=284.26 Aligned_cols=212 Identities=29% Similarity=0.417 Sum_probs=183.4
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~----- 284 (489)
..++.++.|.+-+|++|.+.++.+|...+.|+++|+.+|||+|||||||||||+|++|+|++....++.+..+++
T Consensus 151 dvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkyl 230 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 230 (408)
T ss_pred CccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHh
Confidence 359999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred -CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCce
Q 011286 285 -EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDER 361 (489)
Q Consensus 285 -~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ 361 (489)
++...++.+|.-+ ..|+||||||||++.. .|.+.+.+. ....+++|-.|||.|||+... .++
T Consensus 231 gegprmvrdvfrlakenapsiifideidaiat--krfdaqtga-----------drevqril~ellnqmdgfdq~--~nv 295 (408)
T KOG0727|consen 231 GEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT--KRFDAQTGA-----------DREVQRILIELLNQMDGFDQT--TNV 295 (408)
T ss_pred ccCcHHHHHHHHHHhccCCcEEEeehhhhHhh--hhccccccc-----------cHHHHHHHHHHHHhccCcCcc--cce
Confidence 4667778887544 5699999999999975 444433322 456789999999999999654 569
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHhc
Q 011286 362 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLMR 436 (489)
Q Consensus 362 iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~~ 436 (489)
-||++||+.+.|||||+||||+|++|+||+|+..|++-+|.............+++.++.. ...|+|+|..+|..
T Consensus 296 kvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqe 371 (408)
T KOG0727|consen 296 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQE 371 (408)
T ss_pred EEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHH
Confidence 9999999999999999999999999999999999999998887776555555577777764 56999999988864
No 7
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-35 Score=303.68 Aligned_cols=220 Identities=22% Similarity=0.312 Sum_probs=187.2
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc------
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------ 284 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~------ 284 (489)
..|.++.|.+..-.++++.+.. +++|+.|..+|..++||+|||||||||||+||+|+|++++.|++.++..++
T Consensus 187 v~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 187 VSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred cchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 4799999999999999887776 999999999999999999999999999999999999999999999998876
Q ss_pred CChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccC--CCCc
Q 011286 285 EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSS--CGDE 360 (489)
Q Consensus 285 ~~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~--~g~~ 360 (489)
++++.++++|.++. .|||+||||||++.+.+...+. .-.++++++||+.||++... .|+.
T Consensus 266 ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqr----------------eMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQR----------------EMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHH----------------HHHHHHHHHHHHhhhcccccccCCCC
Confidence 57899999998885 5999999999999886554332 23578999999999998654 3578
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHhcCCC
Q 011286 361 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLMRDEV 439 (489)
Q Consensus 361 ~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~~~~~ 439 (489)
|+||++||+||.|||||.|+||||..|.++.|+..+|..|++..+..-.+...-++..++.. -+|-+||+...+.. .
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~--A 407 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCRE--A 407 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHH--H
Confidence 99999999999999999999999999999999999999999998875555555566677664 35888888777642 3
Q ss_pred HHHHHHHHHH
Q 011286 440 PKIALSGLIQ 449 (489)
Q Consensus 440 ~~~al~~l~~ 449 (489)
+..|++.+.+
T Consensus 408 a~vAikR~ld 417 (802)
T KOG0733|consen 408 AFVAIKRILD 417 (802)
T ss_pred HHHHHHHHhh
Confidence 4556666444
No 8
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-35 Score=317.55 Aligned_cols=213 Identities=28% Similarity=0.383 Sum_probs=181.5
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~--- 284 (489)
+.+.+|++|+|.++.|++|.+ +..||++|+.|.++|...|+|+||+||||||||.||+|+|.+.+.||+.++.++.
T Consensus 305 ~t~V~FkDVAG~deAK~El~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 335799999999999999987 5579999999999999999999999999999999999999999999999999986
Q ss_pred ---CChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 285 ---EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 285 ---~~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
.+.+.++.+|..++ .|||+||||||.+...+. +..... .+.....+|++||.+|||..+. .
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~-G~~~~~-----------~~~e~e~tlnQll~emDgf~~~--~ 449 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRG-GKGTGG-----------GQDEREQTLNQLLVEMDGFETS--K 449 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEeccccccccccc-ccccCC-----------CChHHHHHHHHHHHHhcCCcCC--C
Confidence 35789999998775 599999999999976442 100000 1455678999999999999765 6
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC-ChHhHHHHHh-ccCCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP-LFLEVEELIE-KVEVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~-l~~~i~~l~~-~~~~spa~i~~~l~ 435 (489)
++|++++||+++.||+||+||||||.+|+++.|+..+|..|++.++...... ...++..++. ..++|+|||++.+.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~n 527 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCN 527 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhh
Confidence 6999999999999999999999999999999999999999999999865443 2335555544 35699999999886
No 9
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-35 Score=309.97 Aligned_cols=210 Identities=25% Similarity=0.380 Sum_probs=175.7
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~----- 284 (489)
..+||++.|.+++|++|++-|..+|++++.|.. |...+.|+|||||||||||.+|+|+|.++...++.+...++
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYV 746 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYV 746 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHh
Confidence 358999999999999999999999999999976 77778899999999999999999999999999999988776
Q ss_pred -CChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCce
Q 011286 285 -EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDER 361 (489)
Q Consensus 285 -~~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ 361 (489)
++++++|++|.++. +|||||+||+|.+.+.|.+.++. ++...++.|+||.+|||+...+...+
T Consensus 747 GqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDS--------------GGVMDRVVSQLLAELDgls~~~s~~V 812 (953)
T KOG0736|consen 747 GQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDS--------------GGVMDRVVSQLLAELDGLSDSSSQDV 812 (953)
T ss_pred cchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCc--------------cccHHHHHHHHHHHhhcccCCCCCce
Confidence 68899999998885 59999999999999977766543 45678999999999999987667889
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHH-HHHHHHHhhCcCCCCChHhHHHHHhc--cCCCHHHHHHHH
Q 011286 362 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCG-FKMLASNYLGITEHPLFLEVEELIEK--VEVTPADVAEQL 434 (489)
Q Consensus 362 iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~-~~~l~~~~l~~~~~~l~~~i~~l~~~--~~~spa~i~~~l 434 (489)
+||++||+||.|||||+||||||+-++++.+...+ ...+++..-..-..+-..++.++++. -++|+||+-..|
T Consensus 813 FViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLC 888 (953)
T KOG0736|consen 813 FVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLC 888 (953)
T ss_pred EEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHH
Confidence 99999999999999999999999999999997655 44444433222112222244555554 469999997776
No 10
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=277.31 Aligned_cols=214 Identities=27% Similarity=0.356 Sum_probs=179.1
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~--- 284 (489)
.+..+|+++.|.+.+.|+|.+.++.+|.+|++|..+|+.+|+|++|||+||||||.||+|+||.....|+.+-.+++
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 34469999999999999999999999999999999999999999999999999999999999999999998888876
Q ss_pred ---CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 285 ---~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
.+..-++++|.-+ ..|||+||||||++...+ -+.... +....++++-.|||.+||+.+. +
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKR--yds~Sg-----------gerEiQrtmLELLNQldGFdsr--g 323 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKR--YDSNSG-----------GEREIQRTMLELLNQLDGFDSR--G 323 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhcccc--ccCCCc-----------cHHHHHHHHHHHHHhccCcccc--C
Confidence 3456667777554 579999999999997533 221111 1345788999999999999874 5
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHh-ccCCCHHHHHHHHhc
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE-KVEVTPADVAEQLMR 436 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i~~~l~~ 436 (489)
.+-||++||+.+.|||||+||||+|++|+||.|+...++.||..+-......-...++.++- ...+|+|||..+|..
T Consensus 324 DvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictE 401 (440)
T KOG0726|consen 324 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTE 401 (440)
T ss_pred CeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHH
Confidence 69999999999999999999999999999999999999999876665443333345666665 456999999998864
No 11
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=9.7e-33 Score=286.82 Aligned_cols=213 Identities=27% Similarity=0.385 Sum_probs=177.6
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~--- 284 (489)
.+..+|++|+|.+.+|++|.+.++.++.+++.|.++|.++++|+|||||||||||++|+++|++++.+++.+..+.+
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999987664
Q ss_pred ---CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 285 ---~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
.+...++.+|..+ ..|+||||||||.++..+.... .. .......++..||+.+|++... .
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~--~~-----------~d~~~~r~l~~LL~~ld~~~~~--~ 283 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ--TG-----------ADREVQRILLELLNQMDGFDQT--T 283 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcccccccc--CC-----------ccHHHHHHHHHHHHHhhccCCC--C
Confidence 2345677777554 5699999999999975331110 00 0234567889999999998654 4
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 435 (489)
+++||+|||+++.||||++||||||.+|+|++|+.++|..|++.++.........++..++.. .++||+||..++.
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~ 360 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQ 360 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999998875544434456677765 4699999998875
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-34 Score=267.43 Aligned_cols=213 Identities=27% Similarity=0.359 Sum_probs=180.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~---- 284 (489)
+-.+++-+.|.+.+.++|.+-++.+.++|+.|..+|++-|+|+|||||||||||.||+|+|.+....++.++.+++
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 3468899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCc
Q 011286 285 --EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDE 360 (489)
Q Consensus 285 --~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~ 360 (489)
++...++++|.-+ ..|||||+||||++...+...+.. +++..+++.-.|||.+||+..+ .+
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~g-------------gdsevqrtmlellnqldgfeat--kn 286 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSG-------------GDSEVQRTMLELLNQLDGFEAT--KN 286 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCC-------------ccHHHHHHHHHHHHhccccccc--cc
Confidence 3556677887554 579999999999997643322211 1566789999999999999765 56
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHhc
Q 011286 361 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLMR 436 (489)
Q Consensus 361 ~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~~ 436 (489)
+-||++||+.+.|||||+||||+|++|+||+|+.++|.+|++.+-......-.-.+..+++.. +.|+|++...|..
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhh
Confidence 999999999999999999999999999999999999999998766544333334556666654 4899999888864
No 13
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-33 Score=276.56 Aligned_cols=222 Identities=22% Similarity=0.323 Sum_probs=183.0
Q ss_pred CCC-CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc--
Q 011286 208 DHP-ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV-- 284 (489)
Q Consensus 208 ~~p-~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~-- 284 (489)
.+| ..|++|+|..+.|+-|.+.+..++.-|++|+.+-.|| +|+|++||||||||+||+|+|.+++..|+.|+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 344 5899999999999999999999999999999988888 599999999999999999999999999999998887
Q ss_pred ---CChHHHHHHHHHc---cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCC
Q 011286 285 ---EGNKDLRQILIAT---ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCG 358 (489)
Q Consensus 285 ---~~~~~L~~l~~~~---~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g 358 (489)
...+.|.+++..+ ..|++|||||||.+...+.+.+. +..+++.-+.||.+|||+..+..
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~E---------------HEaSRRvKsELLvQmDG~~~t~e 348 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSE---------------HEASRRVKSELLVQMDGVQGTLE 348 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccc---------------hhHHHHHHHHHHHHhhccccccc
Confidence 2345666666655 35999999999999875443321 56678999999999999865432
Q ss_pred C--ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 359 D--ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 359 ~--~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
. -|+|.++||.||.||.||+| ||.+.|++|.|+.++|+.|++..+..........++.+++.. +||++||.++|.
T Consensus 349 ~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCr 426 (491)
T KOG0738|consen 349 NSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCR 426 (491)
T ss_pred cceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHH
Confidence 2 27788999999999999999 999999999999999999999988754333334556666654 599999999884
Q ss_pred cCCCHHHHHHHHHHHHH
Q 011286 436 RDEVPKIALSGLIQFLQ 452 (489)
Q Consensus 436 ~~~~~~~al~~l~~~l~ 452 (489)
++++..+...+.
T Consensus 427 -----eAsm~~mRR~i~ 438 (491)
T KOG0738|consen 427 -----EASMMAMRRKIA 438 (491)
T ss_pred -----HHHHHHHHHHHh
Confidence 566666555444
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-32 Score=260.18 Aligned_cols=213 Identities=23% Similarity=0.306 Sum_probs=175.4
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~--- 284 (489)
.+..+++++.|.+.+.+++++.+..++.+++.|..+|+.+|+|+|+|||||||||.+|+|.|...+..+..+-...+
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 44468999999999999999999999999999999999999999999999999999999999999988877655544
Q ss_pred ---CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 285 ---~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
.+..-++..|.-+ +.|+||||||+|.+...+ .+.. +++....+++.-.|||.+||+.+. +
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKR--fDSe-----------k~GDREVQRTMLELLNQLDGFss~--~ 309 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKR--FDSE-----------KAGDREVQRTMLELLNQLDGFSSD--D 309 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhcccc--cccc-----------ccccHHHHHHHHHHHHhhcCCCCc--c
Confidence 2334455666444 569999999999997532 2211 112566789999999999999654 7
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
.+-||++||+.+.|||||+|.||+|++|+||.|+.++|..|++.+-..........+++|+..+ .|.+|+....|.
T Consensus 310 ~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcV 386 (424)
T KOG0652|consen 310 RVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCV 386 (424)
T ss_pred ceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeeh
Confidence 7999999999999999999999999999999999999999998877655544445566777654 488888877665
No 15
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.8e-32 Score=290.11 Aligned_cols=232 Identities=26% Similarity=0.336 Sum_probs=189.9
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~---- 284 (489)
...+|.+++|.++.|+++.+ +..||+.|..|..+|...|+|+||+||||||||+||+|+|.+.+.|++.++.|+.
T Consensus 145 ~~v~F~DVAG~dEakeel~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 34699999999999999977 6679999999999999999999999999999999999999999999999999986
Q ss_pred --CChHHHHHHHHHccC--CeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCc
Q 011286 285 --EGNKDLRQILIATEN--KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDE 360 (489)
Q Consensus 285 --~~~~~L~~l~~~~~~--~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~ 360 (489)
.+.+.+|.+|.++.+ ||||||||||+....+.... .. ++.....++++||.+|||.... +.
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~--Gg-----------gnderEQTLNQlLvEmDGF~~~--~g 288 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGL--GG-----------GNDEREQTLNQLLVEMDGFGGN--EG 288 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCC--CC-----------CchHHHHHHHHHHhhhccCCCC--Cc
Confidence 478999999988864 99999999999865332220 00 1445678999999999999643 56
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHhc---
Q 011286 361 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLMR--- 436 (489)
Q Consensus 361 ~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~~--- 436 (489)
+++|++||+|+-|||||+||||||++|.++.|+...|++|++.+.......-..++..++..+ ++++|++++.+..
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal 368 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAAL 368 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHH
Confidence 999999999999999999999999999999999999999999777644333334455555543 5999999998842
Q ss_pred -----------CCCHHHHHHHHHHHHHHHHh
Q 011286 437 -----------DEVPKIALSGLIQFLQIKKR 456 (489)
Q Consensus 437 -----------~~~~~~al~~l~~~l~~~~~ 456 (489)
..+-+.|++.+....+++.+
T Consensus 369 ~aar~n~~~i~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 369 LAARRNKKEITMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred HHHHhcCeeEeccchHHHHHHHhcCcCcCCc
Confidence 23556666666655554443
No 16
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=5.3e-31 Score=274.43 Aligned_cols=213 Identities=28% Similarity=0.352 Sum_probs=176.2
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~--- 284 (489)
.+..+|++++|.++++++|.+.+..++.+++.|+.+|..+++|+|||||||||||++|+++|++++.+++.++++.+
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ---CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 285 ---~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
.+...++.+|..+ ..|+||||||||.++..+...... .......++..||+.+|++... .
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~-------------~~~~~~~~l~~lL~~ld~~~~~--~ 269 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTS-------------GDREVQRTLMQLLAEMDGFDPR--G 269 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCC-------------ccHHHHHHHHHHHHhccccCCC--C
Confidence 2345667777655 468999999999997533211100 0233467788999999997543 4
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 435 (489)
+++||+|||+++.+|+|++||||||.+|+||.|+.++|.+|++.++.........++..++.. .++|++|+..++.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~ 346 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICT 346 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 689999999999999999999999999999999999999999998875433333456666664 4699999998875
No 17
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=3.9e-31 Score=280.27 Aligned_cols=183 Identities=27% Similarity=0.389 Sum_probs=152.4
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc----------EE
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD----------VY 277 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~----------~~ 277 (489)
.++.+|++++|.+++++.|.+.+..++.+++.|+..|+++++|+|||||||||||++++++|++++.+ ++
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 34579999999999999999999999999999999999999999999999999999999999999765 23
Q ss_pred EeecCcc------CChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHH
Q 011286 278 DLELSSV------EGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSG 345 (489)
Q Consensus 278 ~l~~s~~------~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 345 (489)
.+..+.+ .+...++.+|..+. .|+||||||||.++..+..... ......++++
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s---------------~d~e~~il~~ 320 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS---------------SDVETTVVPQ 320 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc---------------chHHHHHHHH
Confidence 3333332 23456777775543 5899999999999864321100 1223567899
Q ss_pred HHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011286 346 LLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 407 (489)
Q Consensus 346 LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 407 (489)
||+.|||+.+. ++++||+|||+++.|||||+||||||.+|+|++|+.+++++|+++|+..
T Consensus 321 LL~~LDgl~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 321 LLSELDGVESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred HHHHhcccccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 99999999754 4699999999999999999999999999999999999999999999864
No 18
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=7e-31 Score=274.76 Aligned_cols=214 Identities=26% Similarity=0.342 Sum_probs=176.2
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc--
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV-- 284 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~-- 284 (489)
..++.+|++++|.++++++|.+.+..++.++++|..+|+.+++|+|||||||||||++|+++|++++.+++.+..+.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 345579999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred ----CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCC
Q 011286 285 ----EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCG 358 (489)
Q Consensus 285 ----~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g 358 (489)
.+...++.+|..+ ..|+||||||||.++..+...... +......++..||+.+||+...
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sg-------------g~~e~qr~ll~LL~~Ldg~~~~-- 320 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSG-------------GEKEIQRTMLELLNQLDGFDSR-- 320 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCc-------------ccHHHHHHHHHHHHHHhhhccc--
Confidence 2344567777554 468999999999997532211100 0233467788999999998543
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHh
Q 011286 359 DERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 359 ~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 435 (489)
.++.||+|||+++.||||++||||||.+|+|+.|+.++|..|++.++.........++..++.. .++|+|||..+|.
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999875543333456666654 4699999988764
No 19
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=9.3e-31 Score=293.18 Aligned_cols=220 Identities=25% Similarity=0.334 Sum_probs=183.2
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~----- 284 (489)
..+|++++|.+++|+.+.+.+..++..++.|.++|..+++|+|||||||||||++|+++|++++.+++.++++++
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~v 528 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWV 528 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhccc
Confidence 358999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred -CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCce
Q 011286 285 -EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDER 361 (489)
Q Consensus 285 -~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ 361 (489)
++...++.+|..+ ..||||||||||.+++.+..... .......+++||..|||+... .++
T Consensus 529 Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~---------------~~~~~~~~~~lL~~ldg~~~~--~~v 591 (733)
T TIGR01243 529 GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD---------------TSVTDRIVNQLLTEMDGIQEL--SNV 591 (733)
T ss_pred CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC---------------ccHHHHHHHHHHHHhhcccCC--CCE
Confidence 3567789999766 45899999999999863321100 233567889999999998653 569
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHhcCCCH
Q 011286 362 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLMRDEVP 440 (489)
Q Consensus 362 iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~~~~~~ 440 (489)
+||+|||+++.||||++||||||.+|++|+|+.++|.+|++.+..........++..++... ++|++||...+.
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~----- 666 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCR----- 666 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHH-----
Confidence 99999999999999999999999999999999999999999887654443344567777654 599999988763
Q ss_pred HHHHHHHHHHH
Q 011286 441 KIALSGLIQFL 451 (489)
Q Consensus 441 ~~al~~l~~~l 451 (489)
++++..+.+.+
T Consensus 667 ~A~~~a~~~~~ 677 (733)
T TIGR01243 667 EAAMAALRESI 677 (733)
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 20
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=1.4e-30 Score=279.70 Aligned_cols=232 Identities=24% Similarity=0.344 Sum_probs=184.7
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~--- 284 (489)
.+..+|++++|.+++|+++.+.+ .++..++.|...|..+++|+|||||||||||++++++|++++.+++.++++.+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~-~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIV-DFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH-HHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 34569999999999999998654 57899999999999999999999999999999999999999999999988765
Q ss_pred ---CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 285 ---~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
.+...++.+|..+ ..||||||||||.+...+...... .......+++.||+.||++... +
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~-------------~~~~~~~~~~~lL~~~d~~~~~--~ 192 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG-------------GNDEREQTLNQLLVEMDGFGTN--T 192 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCC-------------ccHHHHHHHHHHHhhhccccCC--C
Confidence 2456788898776 458999999999997533221000 0223467889999999998654 4
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHhc--
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLMR-- 436 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~~-- 436 (489)
+++||+|||+++.|||||+||||||.+|+++.|+.++|.+|++.++.........++..++... ++|++||...+.+
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~ 272 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAA 272 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999998765444344566676654 5999999987752
Q ss_pred -----CCCHHHHHHHHHHHHHHHH
Q 011286 437 -----DEVPKIALSGLIQFLQIKK 455 (489)
Q Consensus 437 -----~~~~~~al~~l~~~l~~~~ 455 (489)
.+......+.+.++++...
T Consensus 273 ~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 273 LLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHh
Confidence 1222334555555555543
No 21
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.8e-31 Score=251.49 Aligned_cols=218 Identities=25% Similarity=0.317 Sum_probs=178.8
Q ss_pred ceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 202 WQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 202 w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
...+.-.+-.|+.++.|-.++.+.+.+-++.++.+|+.|-.+|+.+|+|+|||||||||||.+|+|+||..+.-++.+-.
T Consensus 165 mm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvig 244 (435)
T KOG0729|consen 165 MMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIG 244 (435)
T ss_pred EEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehh
Confidence 44444455579999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Ccc------CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccc
Q 011286 282 SSV------EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL 353 (489)
Q Consensus 282 s~~------~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl 353 (489)
|++ ++...++++|.-+ +..||||+||||++.+. |.++..+ +....+++...|+|++||+
T Consensus 245 selvqkyvgegarmvrelf~martkkaciiffdeidaigga--rfddg~g-----------gdnevqrtmleli~qldgf 311 (435)
T KOG0729|consen 245 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGA--RFDDGAG-----------GDNEVQRTMLELINQLDGF 311 (435)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCc--cccCCCC-----------CcHHHHHHHHHHHHhccCC
Confidence 876 3556677888655 45799999999999763 3322111 1466789999999999999
Q ss_pred ccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC---hHhHHHHHhccCCCHHHH
Q 011286 354 WSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL---FLEVEELIEKVEVTPADV 430 (489)
Q Consensus 354 ~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l---~~~i~~l~~~~~~spa~i 430 (489)
... +++-|+++||+|+.|||||+||||+|++++|+.|+-+.|..|++.+.......- ++-+..|++ +-|+|+|
T Consensus 312 dpr--gnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcp--nstgaei 387 (435)
T KOG0729|consen 312 DPR--GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCP--NSTGAEI 387 (435)
T ss_pred CCC--CCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCC--CCcchHH
Confidence 654 678999999999999999999999999999999999999999987665433222 333334433 4788999
Q ss_pred HHHHhc
Q 011286 431 AEQLMR 436 (489)
Q Consensus 431 ~~~l~~ 436 (489)
...|..
T Consensus 388 rsvcte 393 (435)
T KOG0729|consen 388 RSVCTE 393 (435)
T ss_pred HHHHHH
Confidence 888764
No 22
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-30 Score=272.65 Aligned_cols=232 Identities=22% Similarity=0.310 Sum_probs=195.0
Q ss_pred CceEcccCCCC--CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 201 IWQSVNLDHPA--TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 201 ~w~~~~~~~p~--~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
..+.+.+..+. .|++++|..++|+.+.+-|+++.+.+..|...+.+.+.|+|||||||||||.||.|+|..+++.++.
T Consensus 652 aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fis 731 (952)
T KOG0735|consen 652 ALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFIS 731 (952)
T ss_pred HhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEE
Confidence 45555555554 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcc------CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhh
Q 011286 279 LELSSV------EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFI 350 (489)
Q Consensus 279 l~~s~~------~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 350 (489)
+...++ .++..+|.+|.++ .+|||||+||+|.+.+.|.-.+ .+...++.++||.+|
T Consensus 732 vKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs----------------TGVTDRVVNQlLTel 795 (952)
T KOG0735|consen 732 VKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS----------------TGVTDRVVNQLLTEL 795 (952)
T ss_pred ecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC----------------CCchHHHHHHHHHhh
Confidence 988776 4688999999877 4699999999999987433211 345678999999999
Q ss_pred cccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHH
Q 011286 351 DGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPAD 429 (489)
Q Consensus 351 dgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~ 429 (489)
||...- +++.|+++|.+|+.|||||+||||+|++++-|.|+..+|.+|++..-.....+-..+++.++.. .++|+||
T Consensus 796 DG~Egl--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgAD 873 (952)
T KOG0735|consen 796 DGAEGL--DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGAD 873 (952)
T ss_pred cccccc--ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhh
Confidence 998653 5699999999999999999999999999999999999999999887665555556677777765 4699999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHH
Q 011286 430 VAEQLMRDEVPKIALSGLIQFLQIKK 455 (489)
Q Consensus 430 i~~~l~~~~~~~~al~~l~~~l~~~~ 455 (489)
++..|- ++-+..+-+++.+..
T Consensus 874 lq~ll~-----~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 874 LQSLLY-----NAQLAAVHEILKRED 894 (952)
T ss_pred HHHHHH-----HHHHHHHHHHHHhcC
Confidence 998884 344555556665544
No 23
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=3.1e-30 Score=273.59 Aligned_cols=204 Identities=18% Similarity=0.244 Sum_probs=166.4
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~----- 284 (489)
+.+|++|+|.+.+|+.+.+....|. ..+...|.++++|+|||||||||||++|+|+|++++.+++.++++.+
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 4589999999999999987665553 33466799999999999999999999999999999999999998765
Q ss_pred -CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCce
Q 011286 285 -EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDER 361 (489)
Q Consensus 285 -~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ 361 (489)
.++..++++|..+ .+||||||||||.++..+...++ .......+..||+.|++. ...+
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d---------------~~~~~rvl~~lL~~l~~~----~~~V 361 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGD---------------SGTTNRVLATFITWLSEK----KSPV 361 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCC---------------chHHHHHHHHHHHHHhcC----CCce
Confidence 3467888888754 56999999999998753221110 234567888999988863 3569
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC--hHhHHHHHhc-cCCCHHHHHHHHh
Q 011286 362 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL--FLEVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 362 iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l--~~~i~~l~~~-~~~spa~i~~~l~ 435 (489)
+||+|||+++.||||++||||||.+|+++.|+.++|.+|++.++....... ..++..++.. .+||+|||.+.+.
T Consensus 362 ~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 362 FVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred EEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997643221 3456777765 4699999988764
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=3.9e-30 Score=244.02 Aligned_cols=206 Identities=20% Similarity=0.314 Sum_probs=173.5
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~--- 284 (489)
....+||+|+|+++.|+.- ..|..||.+|+.|..+ .|+++|||||||||||++|+|+|++.+.|++.+..+++
T Consensus 115 ~~~it~ddViGqEeAK~kc-rli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKC-RLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHH-HHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 3456999999999998875 5677899999888553 37899999999999999999999999999999998887
Q ss_pred ---CChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 285 ---EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 285 ---~~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
.+...+++++..+. .|||+||||+|++.- +|+=+.- ......+.+.||..|||+.. ++
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaL--dRryQel-------------RGDVsEiVNALLTelDgi~e--ne 253 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIAL--DRRYQEL-------------RGDVSEIVNALLTELDGIKE--NE 253 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh--hhhHHHh-------------cccHHHHHHHHHHhccCccc--CC
Confidence 24577889987774 699999999999864 2221111 34567889999999999974 57
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHhc
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLMR 436 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~~ 436 (489)
+++.|++||+|+.||||+.. ||...|+|..|+.++|..|++.|+..--.+....++.+.+. .++|+.||.+-+++
T Consensus 254 GVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK 329 (368)
T COG1223 254 GVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLK 329 (368)
T ss_pred ceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHH
Confidence 79999999999999999999 99999999999999999999999987766766677777775 46999999987764
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-29 Score=270.46 Aligned_cols=213 Identities=29% Similarity=0.396 Sum_probs=182.2
Q ss_pred cccCC-CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCc
Q 011286 205 VNLDH-PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283 (489)
Q Consensus 205 ~~~~~-p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~ 283 (489)
+.+.. ..+|++++|..+.|+.+.+.+..++..++.|.+.|..+++|+|||||||||||+||+|+|++++.+++.++.++
T Consensus 232 ~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~ 311 (494)
T COG0464 232 VLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE 311 (494)
T ss_pred cccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH
Confidence 33444 45999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred c------CChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccccc
Q 011286 284 V------EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWS 355 (489)
Q Consensus 284 ~------~~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s 355 (489)
+ +++..++++|..+. .||||||||||.++..+.... .......+++||..|||+..
T Consensus 312 l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~----------------~~~~~r~~~~lL~~~d~~e~ 375 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE----------------DGSGRRVVGQLLTELDGIEK 375 (494)
T ss_pred HhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC----------------chHHHHHHHHHHHHhcCCCc
Confidence 6 46788999998775 699999999999987443211 12236899999999999965
Q ss_pred CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCCh--HhHHHHHhc-cCCCHHHHHH
Q 011286 356 SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF--LEVEELIEK-VEVTPADVAE 432 (489)
Q Consensus 356 ~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~--~~i~~l~~~-~~~spa~i~~ 432 (489)
. ++++||+|||+|+.+|||++||||||..|++|.|+.++|..+++.++......+. .++..++.. .++|++||..
T Consensus 376 ~--~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~ 453 (494)
T COG0464 376 A--EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAA 453 (494)
T ss_pred c--CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHH
Confidence 4 5699999999999999999999999999999999999999999999986655433 244555553 4599999998
Q ss_pred HHh
Q 011286 433 QLM 435 (489)
Q Consensus 433 ~l~ 435 (489)
.+.
T Consensus 454 i~~ 456 (494)
T COG0464 454 LVR 456 (494)
T ss_pred HHH
Confidence 885
No 26
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=2.3e-29 Score=274.57 Aligned_cols=212 Identities=28% Similarity=0.362 Sum_probs=174.9
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC--
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-- 285 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~-- 285 (489)
....+|++++|.++.|+++.+ +..+++.++.|..+|..+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~e-iv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEE-VVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHH-HHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 345699999999999998855 56789999999999999999999999999999999999999999999999988752
Q ss_pred ----ChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 286 ----GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 286 ----~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
+...++.+|..+. .||||||||||++...+...... .......+++.||..+||+... .
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~-------------~~~e~~~~L~~LL~~~dg~~~~--~ 320 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG-------------GNDEREQTLNQLLTEMDGFKGN--K 320 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCC-------------CcHHHHHHHHHHHhhhccccCC--C
Confidence 3466788887764 58999999999997533211100 0234567899999999998654 4
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
+++||+|||+++.|||||+||||||.+|+++.|+.++|..|++.++..........+..++... ++|++|+.+.+.
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvn 397 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLN 397 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999764333344566666654 599999998875
No 27
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-30 Score=249.01 Aligned_cols=207 Identities=24% Similarity=0.327 Sum_probs=175.9
Q ss_pred cCCC-CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc-
Q 011286 207 LDHP-ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV- 284 (489)
Q Consensus 207 ~~~p-~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~- 284 (489)
.+.| ..|++|+|.+..|+.+.+.+..+++.|++|..--+|| +|+|||||||||||.||+|+|.+.+..++.++.+++
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLv 203 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 203 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHH
Confidence 4445 4789999999999999999999999999998766666 799999999999999999999999999999999887
Q ss_pred -----CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCC
Q 011286 285 -----EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSC 357 (489)
Q Consensus 285 -----~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~ 357 (489)
+++.-++++|.-+ ..||||||||||.+++.++.+. +...+++-..||.+|.|+...
T Consensus 204 SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE----------------seasRRIKTEfLVQMqGVG~d- 266 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE----------------SEASRRIKTEFLVQMQGVGND- 266 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc----------------hHHHHHHHHHHHHhhhccccC-
Confidence 3455566777544 5699999999998876433221 345678889999999998643
Q ss_pred CCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC-hHhHHHHHhcc-CCCHHHHHHH
Q 011286 358 GDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL-FLEVEELIEKV-EVTPADVAEQ 433 (489)
Q Consensus 358 g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~spa~i~~~ 433 (489)
.++++|+++||-|+.||.|+.| ||+..|++|.|...+|..+|+.+++...|.+ ..++.+|...+ ++|++||.-+
T Consensus 267 ~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisiv 342 (439)
T KOG0739|consen 267 NDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIV 342 (439)
T ss_pred CCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEE
Confidence 4679999999999999999999 9999999999999999999999999988888 45788888765 4999998643
No 28
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.2e-29 Score=249.12 Aligned_cols=221 Identities=20% Similarity=0.296 Sum_probs=186.6
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhC-CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC----
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE---- 285 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g-~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~---- 285 (489)
.+|+++.|.+++|+.+.+.+..++.++++|...+ ..+++|+|||||||||||++|+|+|.+.+.+++.++.+.+.
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 3899999999999999999999999999997433 34678999999999999999999999999999999999873
Q ss_pred --ChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCce
Q 011286 286 --GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDER 361 (489)
Q Consensus 286 --~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ 361 (489)
+++-++.+|.-+. +||||||||||.++..+...+ +......-++|...+||+.+..+..+
T Consensus 169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~d----------------HEa~a~mK~eFM~~WDGl~s~~~~rV 232 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTD----------------HEATAMMKNEFMALWDGLSSKDSERV 232 (386)
T ss_pred HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccch----------------HHHHHHHHHHHHHHhccccCCCCceE
Confidence 3344455554443 599999999999987552111 34456777899999999998877789
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHhcCCCH
Q 011286 362 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLMRDEVP 440 (489)
Q Consensus 362 iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~~~~~~ 440 (489)
+|+++||+|..||.|++| ||...++++.|+.++|+.|++-+|..+...-.-++.+++..+ +||+.|+.+.|.
T Consensus 233 lVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~----- 305 (386)
T KOG0737|consen 233 LVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCR----- 305 (386)
T ss_pred EEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHH-----
Confidence 999999999999999999 999999999999999999999999987666566777777765 599999999985
Q ss_pred HHHHHHHHHHHHHH
Q 011286 441 KIALSGLIQFLQIK 454 (489)
Q Consensus 441 ~~al~~l~~~l~~~ 454 (489)
.+|+..+.+.++..
T Consensus 306 ~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 306 LAALRPIRELLVSE 319 (386)
T ss_pred HHhHhHHHHHHHhc
Confidence 67777777777765
No 29
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=2.3e-28 Score=245.38 Aligned_cols=207 Identities=20% Similarity=0.180 Sum_probs=152.1
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~---- 284 (489)
...+|+++.|.=-+-...++.+...+ .+.+....|+.+|++++||||||||||++|+|+|++++.+++.++.+++
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi-~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHI-AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHH-HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34567776444333333333222111 2344455789999999999999999999999999999999999999887
Q ss_pred --CChHHHHHHHHHcc-------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccc--
Q 011286 285 --EGNKDLRQILIATE-------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL-- 353 (489)
Q Consensus 285 --~~~~~L~~l~~~~~-------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl-- 353 (489)
+++..++++|..+. +||||||||||.+++.+. +... ....+.+...||+.+|+.
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~--~~~~-------------tv~~qiV~~tLLnl~D~p~~ 253 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG--TTQY-------------TVNNQMVNGTLMNIADNPTN 253 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC--CCCc-------------chHHHHHHHHHHHHhcCCcc
Confidence 46788999997653 599999999999987432 1100 112345558899998863
Q ss_pred ------c--cCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhccCC
Q 011286 354 ------W--SSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEV 425 (489)
Q Consensus 354 ------~--s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~ 425 (489)
| ......++||+|||+|+.|||||+||||||..+ ..|+.++|..|++.++...+.. ..++..++....-
T Consensus 254 v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 254 VSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred ccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 4 122356899999999999999999999999965 6899999999999999876544 5788888876554
Q ss_pred CHHHHHHHH
Q 011286 426 TPADVAEQL 434 (489)
Q Consensus 426 spa~i~~~l 434 (489)
-+.|.-..|
T Consensus 331 q~~Df~GAl 339 (413)
T PLN00020 331 QPLDFFGAL 339 (413)
T ss_pred CCchhhhHH
Confidence 444444444
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-29 Score=243.71 Aligned_cols=208 Identities=25% Similarity=0.333 Sum_probs=170.0
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC------
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE------ 285 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~------ 285 (489)
+|+.+.|.-.+-.++++-++.++..++.|.++|+.+|.|+|||||||||||.+++++|..++.+++.+..+.+.
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGE 209 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGE 209 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999888873
Q ss_pred ChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEE
Q 011286 286 GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERII 363 (489)
Q Consensus 286 ~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ii 363 (489)
...-+++.|..+. .|||||+||||+..+.+.... .. .+...+.||-.|||.|||...- +.+-+
T Consensus 210 saRlIRemf~yA~~~~pciifmdeiDAigGRr~se~--Ts-----------~dreiqrTLMeLlnqmdgfd~l--~rVk~ 274 (388)
T KOG0651|consen 210 SARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEG--TS-----------SDREIQRTLMELLNQMDGFDTL--HRVKT 274 (388)
T ss_pred HHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccc--cc-----------hhHHHHHHHHHHHHhhccchhc--ccccE
Confidence 3455677777664 489999999999976432111 11 0455789999999999998654 56899
Q ss_pred EEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC---CCCChHhHHHHHhccCCCHHHHHHHHhc
Q 011286 364 IFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT---EHPLFLEVEELIEKVEVTPADVAEQLMR 436 (489)
Q Consensus 364 I~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~---~~~l~~~i~~l~~~~~~spa~i~~~l~~ 436 (489)
|+|||+|+.|||||+||||+|+.++.|.|+...|..+++-.-..- +.-.++++..+.. ++.++|+.+.+..
T Consensus 275 ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d--~f~gad~rn~~tE 348 (388)
T KOG0651|consen 275 IMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVD--GFNGADLRNVCTE 348 (388)
T ss_pred EEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHh--ccChHHHhhhccc
Confidence 999999999999999999999999999999999988776544321 1112344444443 5788887766654
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=4.9e-28 Score=250.53 Aligned_cols=214 Identities=27% Similarity=0.328 Sum_probs=171.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC-
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE- 285 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~- 285 (489)
..+..+|++++|.++++++|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.+..+.+.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 3455689999999999999999999999999999999999999999999999999999999999999999988766541
Q ss_pred -----ChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCC
Q 011286 286 -----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCG 358 (489)
Q Consensus 286 -----~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g 358 (489)
+...++.+|..+ ..|+||||||+|.+...+.... .. .......++..+|+.+|++...
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~--~~-----------~~~~~~~~l~~ll~~ld~~~~~-- 259 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSG--TS-----------GDREVQRTLMQLLAELDGFDPR-- 259 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCC--CC-----------ccHHHHHHHHHHHHHhhCCCCC--
Confidence 234456666544 4689999999999875322110 00 0233467788999999987433
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 359 DERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 359 ~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
.++.||+|||+++.+|++++||||||..|+|+.|+.++|..|++.++.........++..++... ++|++|+..++.
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999988654333223455666543 599999987764
No 32
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=8.2e-28 Score=275.72 Aligned_cols=178 Identities=16% Similarity=0.135 Sum_probs=140.2
Q ss_pred cHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCC-----------------------------
Q 011286 236 RKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG----------------------------- 286 (489)
Q Consensus 236 ~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~----------------------------- 286 (489)
.+.++.++|..+++|+||+||||||||+||+|+|.+.++|++.++++++..
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 356778899999999999999999999999999999999999998876521
Q ss_pred --------------------hHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHH
Q 011286 287 --------------------NKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLS 344 (489)
Q Consensus 287 --------------------~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 344 (489)
...++.+|..+ .+||||||||||.+... .....+++
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~----------------------ds~~ltL~ 1755 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN----------------------ESNYLSLG 1755 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC----------------------ccceehHH
Confidence 01256677655 46999999999999641 11234689
Q ss_pred HHHHhhccccc-CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCCh---HhHHHHH
Q 011286 345 GLLNFIDGLWS-SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF---LEVEELI 420 (489)
Q Consensus 345 ~LL~~ldgl~s-~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~---~~i~~l~ 420 (489)
.||+.|||... ....+++||+|||+|+.|||||+||||||.+|+++.|+..+|++++...+...+..+. .++..++
T Consensus 1756 qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA 1835 (2281)
T CHL00206 1756 LLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFG 1835 (2281)
T ss_pred HHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHH
Confidence 99999998742 2245699999999999999999999999999999999999999887754433232222 2456666
Q ss_pred hc-cCCCHHHHHHHHh
Q 011286 421 EK-VEVTPADVAEQLM 435 (489)
Q Consensus 421 ~~-~~~spa~i~~~l~ 435 (489)
.. .++|+||+++.+-
T Consensus 1836 ~~T~GfSGADLanLvN 1851 (2281)
T CHL00206 1836 SITMGSNARDLVALTN 1851 (2281)
T ss_pred HhCCCCCHHHHHHHHH
Confidence 64 4699999998874
No 33
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.95 E-value=5.6e-28 Score=203.08 Aligned_cols=97 Identities=41% Similarity=0.755 Sum_probs=93.4
Q ss_pred hCcHHHHHHHHHHHHHHhh-ccCCceEEEeeecCCccCcchhHHHHHHHhCCCCCccccceeeeccCCCCceEEeccCCc
Q 011286 35 YLPHEVSAFIDVKLKNLIA-RFCNELTLLIEEYDDGLNQNKLFKAAKLYLEPKIPPYVKRIKLNLAKKETNVSLSLEKNE 113 (489)
Q Consensus 35 ~~P~~l~~~~~~~~~~l~~-~~~~~~ti~I~e~~~~~~~N~~y~a~~~YL~t~~~~~~~rl~~~~~~~~~~~~~~~~~~~ 113 (489)
|||++||.++.++++++++ +++||+||+|+|+ +|+.+|++|+||++||+++++++++||++++++++++++|+|++||
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~-~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e 79 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEF-DGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGE 79 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeC-CCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCC
Confidence 6899999999999988776 8999999999999 7999999999999999999999999999999999999999999999
Q ss_pred eEEeeecCeEEEEEEeecC
Q 011286 114 EIVDVFNGVQLKWKFESKP 132 (489)
Q Consensus 114 ~~~d~f~g~~~~w~~~~~~ 132 (489)
+|+|+|+||++||.+++++
T Consensus 80 ~V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 80 EVVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred EEEEEECCEEEEEEEEccC
Confidence 9999999999999999864
No 34
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=4.3e-27 Score=259.07 Aligned_cols=211 Identities=24% Similarity=0.348 Sum_probs=172.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~---- 284 (489)
...+|++++|.+..++++.+ +..++..+..|..+|...++|+||+||||||||++++++|++++.+++.++++++
T Consensus 147 ~~~~~~di~g~~~~~~~l~~-i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHH-HHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 34689999999999999865 4556888888999999999999999999999999999999999999999998764
Q ss_pred --CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCc
Q 011286 285 --EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDE 360 (489)
Q Consensus 285 --~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~ 360 (489)
.+...++.+|..+ ..||||||||||.+...+...... .......++++||..|||+... +.
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g-------------~~~~~~~~ln~lL~~mdg~~~~--~~ 290 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG-------------GHDEREQTLNQMLVEMDGFEGN--EG 290 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC-------------CchHHHHHHHHHHHhhhcccCC--CC
Confidence 2456778888665 368999999999997533211000 0234567899999999998654 56
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHh
Q 011286 361 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 361 ~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 435 (489)
+++|+|||+++.||||++||||||++|+++.|+.++|.+|++.|+.........++..++.. .++|+|||.+.+.
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~ 366 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 366 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999976443333345556654 4699999999885
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=1.9e-25 Score=250.47 Aligned_cols=208 Identities=28% Similarity=0.382 Sum_probs=172.1
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~----- 284 (489)
..+|++++|.+++++.|.+.+..++..++.|+.+|+.+++|+|||||||||||++++++|++++.+++.++++.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~ 253 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYY 253 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccc
Confidence 458999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred -CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCce
Q 011286 285 -EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDER 361 (489)
Q Consensus 285 -~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ 361 (489)
.....++.+|..+ ..|+||||||||.+...++... ........+.|++.||++... ..+
T Consensus 254 g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~----------------~~~~~~~~~~Ll~~ld~l~~~--~~v 315 (733)
T TIGR01243 254 GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT----------------GEVEKRVVAQLLTLMDGLKGR--GRV 315 (733)
T ss_pred cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc----------------chHHHHHHHHHHHHhhccccC--CCE
Confidence 2346688888765 4589999999999975322110 122356788999999998643 468
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHh
Q 011286 362 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 362 iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 435 (489)
+||+|||+++.|||++.||||||.+|+++.|+.++|.+|++.+...........+..++.. .+++++++...+.
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~ 390 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAK 390 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987754332223345566654 4699999987653
No 36
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9e-26 Score=231.77 Aligned_cols=209 Identities=23% Similarity=0.273 Sum_probs=179.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~---- 284 (489)
.+..|++++|....|+.+.+.+..++.+++.|..+ .++.+|+||.||||||||+|++|||.+.+..++.++.+++
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 34689999999999999999999999999998775 4556899999999999999999999999999999999887
Q ss_pred --CChHHHHHHHHH--ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCc
Q 011286 285 --EGNKDLRQILIA--TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDE 360 (489)
Q Consensus 285 --~~~~~L~~l~~~--~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~ 360 (489)
+++.-++.+|.- ..+|+|+||||||.++..+.... .....+....+|..+++..+...+.
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e----------------~e~srr~ktefLiq~~~~~s~~~dr 290 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNE----------------HESSRRLKTEFLLQFDGKNSAPDDR 290 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcc----------------cccchhhhhHHHhhhccccCCCCCe
Confidence 233455666643 35699999999999997542111 3456678889999999999988889
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCCh-HhHHHHHhcc-CCCHHHHHHHHhc
Q 011286 361 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF-LEVEELIEKV-EVTPADVAEQLMR 436 (489)
Q Consensus 361 ~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~-~~i~~l~~~~-~~spa~i~~~l~~ 436 (489)
++||+|||.|+.+|.|++| ||...+++|.|+.++|..+|.+++....+.+. .+++.++.-+ ++|..||...|..
T Consensus 291 vlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 291 VLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred EEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 9999999999999999999 99999999999999999999999998767764 5788888754 5999999998864
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.1e-25 Score=245.67 Aligned_cols=211 Identities=25% Similarity=0.304 Sum_probs=172.6
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----CcEEEeec
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FDVYDLEL 281 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-----~~~~~l~~ 281 (489)
.+.-..|++|+|...+++.+.+-+..+|..+++|...++.+|||+|||||||||||++|+|+|..+. ..++.-+.
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 3445689999999999999999999999999999999999999999999999999999999999982 33333333
Q ss_pred Ccc------CChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccc
Q 011286 282 SSV------EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL 353 (489)
Q Consensus 282 s~~------~~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl 353 (489)
.+. +.+.+++-+|..+. .|+|||+||||-+.+.+..... .....+.+.||-.|||+
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE----------------qih~SIvSTLLaLmdGl 401 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE----------------QIHASIVSTLLALMDGL 401 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH----------------HhhhhHHHHHHHhccCC
Confidence 222 45788999997774 5999999999999887654332 22456778899999999
Q ss_pred ccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHH-HHh-ccCCCHHHHH
Q 011286 354 WSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEE-LIE-KVEVTPADVA 431 (489)
Q Consensus 354 ~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~-l~~-~~~~spa~i~ 431 (489)
.+. +.++||++||+++.+||||.||||||..++||+|+.++|..|+...-..-..++...... +++ ..++-+||+.
T Consensus 402 dsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlk 479 (1080)
T KOG0732|consen 402 DSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLK 479 (1080)
T ss_pred CCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHH
Confidence 765 569999999999999999999999999999999999999999987766656666554443 444 3568888887
Q ss_pred HHHh
Q 011286 432 EQLM 435 (489)
Q Consensus 432 ~~l~ 435 (489)
..|.
T Consensus 480 aLCT 483 (1080)
T KOG0732|consen 480 ALCT 483 (1080)
T ss_pred HHHH
Confidence 7663
No 38
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-24 Score=228.15 Aligned_cols=206 Identities=25% Similarity=0.332 Sum_probs=180.3
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~---- 284 (489)
++.+ +.++|....-..+.+.+..++..+..|...|.++++|+|+|||||||||.+++|+|++.+..++.+++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5666 78899999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred --CChHHHHHHHHHcc--C-CeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 285 --EGNKDLRQILIATE--N-KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 285 --~~~~~L~~l~~~~~--~-~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
++++.|++.|..+. + |+||||||||.+.+.+.... ....++.++|+..+||+.+ ..
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~-----------------~~e~Rv~sqlltL~dg~~~--~~ 319 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD-----------------DVESRVVSQLLTLLDGLKP--DA 319 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc-----------------hHHHHHHHHHHHHHhhCcC--cC
Confidence 57899999998773 4 99999999999987443221 1357888999999999863 46
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHh-ccCCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE-KVEVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i~~~l~ 435 (489)
.+|||++||+|+.|||++.| ||||..++++.|+..+|.++++.+.....+....++..++. .+++++||+...+.
T Consensus 320 ~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ 395 (693)
T KOG0730|consen 320 KVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCR 395 (693)
T ss_pred cEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHH
Confidence 79999999999999999999 99999999999999999999999988776664456666665 46799999998885
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-24 Score=222.87 Aligned_cols=184 Identities=26% Similarity=0.407 Sum_probs=146.8
Q ss_pred cHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-EEEeecCcc------CChHHHHHHHHHccC---------
Q 011286 236 RKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD-VYDLELSSV------EGNKDLRQILIATEN--------- 299 (489)
Q Consensus 236 ~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~-~~~l~~s~~------~~~~~L~~l~~~~~~--------- 299 (489)
.|+.-.++|++.-+|+|||||||||||.+|+.|...|+.. --.++..++ ++++.+|++|..+..
T Consensus 244 pp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~S 323 (744)
T KOG0741|consen 244 PPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANS 323 (744)
T ss_pred CHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccC
Confidence 5788999999999999999999999999999999999753 334555544 578999999977632
Q ss_pred -CeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCcccc
Q 011286 300 -KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALL 378 (489)
Q Consensus 300 -~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALl 378 (489)
--||++||||+++..|....+. ......+.++||.-|||...- ++++||+-||++|.+|.||+
T Consensus 324 gLHIIIFDEiDAICKqRGS~~g~--------------TGVhD~VVNQLLsKmDGVeqL--NNILVIGMTNR~DlIDEALL 387 (744)
T KOG0741|consen 324 GLHIIIFDEIDAICKQRGSMAGS--------------TGVHDTVVNQLLSKMDGVEQL--NNILVIGMTNRKDLIDEALL 387 (744)
T ss_pred CceEEEehhhHHHHHhcCCCCCC--------------CCccHHHHHHHHHhcccHHhh--hcEEEEeccCchhhHHHHhc
Confidence 3599999999998643322111 344578899999999998654 56999999999999999999
Q ss_pred CCCceeeEEEeCCCCHHHHHHHHHHhhCcC-CCC-C--hHhHHHHHhc-cCCCHHHHHHHHh
Q 011286 379 RPGRMDVHIHMSYCTPCGFKMLASNYLGIT-EHP-L--FLEVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 379 RpGRfd~~I~~~~p~~~~~~~l~~~~l~~~-~~~-l--~~~i~~l~~~-~~~spa~i~~~l~ 435 (489)
||||+.++++++.|++..|.+|++.+-... ++. + ..++++++.. .+||+||+...+.
T Consensus 388 RPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 388 RPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred CCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 999999999999999999999987665542 222 2 3356777764 4699999987764
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.2e-21 Score=192.21 Aligned_cols=223 Identities=18% Similarity=0.200 Sum_probs=162.4
Q ss_pred eCCCChhHHHHhhhhHHHhhhhhhhhccceEEEEeecCC----CCCCCCceEcccCCCCCcccccCCHHHHHHHHHHHHH
Q 011286 157 FHKKHKDTVLRTYIPHILKKSKELSKKKKTLKLFTLFPY----RGDTEIWQSVNLDHPATFDTLAMDFDMKKMIMDDLER 232 (489)
Q Consensus 157 ~~~~~~~~vl~~yl~~v~~~~~~~~~~~~~~~i~~~~~~----~~~~~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~ 232 (489)
|.++....|..+|+..++.....+++..+...-+..... .-.+ -.........+|+.|++.+.++++|.+ |..
T Consensus 296 YTtkeg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~--~~~~s~~gk~pl~~ViL~psLe~Rie~-lA~ 372 (630)
T KOG0742|consen 296 YTTKEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQG--SRSASSRGKDPLEGVILHPSLEKRIED-LAI 372 (630)
T ss_pred eeccccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhh--hHhhhhcCCCCcCCeecCHHHHHHHHH-HHH
Confidence 445667789999999999998887776543211111000 0000 011112334569999999999999854 332
Q ss_pred HHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----CChHHHHHHHHHc---cCCeEEE
Q 011286 233 FLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV-----EGNKDLRQILIAT---ENKSILV 304 (489)
Q Consensus 233 ~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~-----~~~~~L~~l~~~~---~~~sIL~ 304 (489)
--.+ .+....+-|++|||||||||||++|+-+|.+.|+++-.+...++ +....++++|.-. .+.-+||
T Consensus 373 aTaN----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllF 448 (630)
T KOG0742|consen 373 ATAN----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLF 448 (630)
T ss_pred Hhcc----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEE
Confidence 2222 22345667899999999999999999999999999998887777 3567888998654 3467999
Q ss_pred EccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCcee
Q 011286 305 VEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMD 384 (489)
Q Consensus 305 iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd 384 (489)
|||.|.++..++... . +......|+.||-....- ...+++|.+||+|+.||.|+-. |||
T Consensus 449 IDEADAFLceRnkty--m-------------SEaqRsaLNAlLfRTGdq----SrdivLvlAtNrpgdlDsAV~D--Rid 507 (630)
T KOG0742|consen 449 IDEADAFLCERNKTY--M-------------SEAQRSALNALLFRTGDQ----SRDIVLVLATNRPGDLDSAVND--RID 507 (630)
T ss_pred ehhhHHHHHHhchhh--h-------------cHHHHHHHHHHHHHhccc----ccceEEEeccCCccchhHHHHh--hhh
Confidence 999999987443322 1 344567788887654332 2468999999999999999999 999
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCc
Q 011286 385 VHIHMSYCTPCGFKMLASNYLGI 407 (489)
Q Consensus 385 ~~I~~~~p~~~~~~~l~~~~l~~ 407 (489)
..|+||.|..++|..|+..||..
T Consensus 508 e~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 508 EVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred heeecCCCChHHHHHHHHHHHHH
Confidence 99999999999999999988854
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.83 E-value=1.2e-20 Score=165.60 Aligned_cols=123 Identities=33% Similarity=0.540 Sum_probs=101.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC------ChHHHHHHHHHc--cC-CeEEEEccchhhhhhhhhHHhh
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE------GNKDLRQILIAT--EN-KSILVVEDIDCCLEMQDRLAKA 321 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~------~~~~L~~l~~~~--~~-~sIL~iDdiD~~~~~~~~~~~~ 321 (489)
+|||||||||||++|+++|++++.+++.+++..+. ....+..+|... .. |+||||||+|.+.... +..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 68999999999999999999999999999998874 456677777665 34 8999999999998633 000
Q ss_pred hhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 011286 322 KAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSY 391 (489)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~ 391 (489)
........+..|++.++..... +.+++||+|||.++.+||+++| |||+.+|++|.
T Consensus 78 -------------~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 -------------SSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp -------------SSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred -------------cccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 0334567889999999997653 3469999999999999999998 89999999974
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=3e-19 Score=169.35 Aligned_cols=186 Identities=19% Similarity=0.212 Sum_probs=123.5
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCCh
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN 287 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~ 287 (489)
-.|.+|++++|++.++..+.-.+.....+ ...-.++|||||||+||||||..||++++.++..++...+...
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 46899999999999998765444432221 1223579999999999999999999999999999998888888
Q ss_pred HHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccc-----cCCC----
Q 011286 288 KDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLW-----SSCG---- 358 (489)
Q Consensus 288 ~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~-----s~~g---- 358 (489)
.++..++.....+.|||||||+.+-. ..-..|+..|+... ....
T Consensus 90 ~dl~~il~~l~~~~ILFIDEIHRlnk---------------------------~~qe~LlpamEd~~idiiiG~g~~ar~ 142 (233)
T PF05496_consen 90 GDLAAILTNLKEGDILFIDEIHRLNK---------------------------AQQEILLPAMEDGKIDIIIGKGPNARS 142 (233)
T ss_dssp HHHHHHHHT--TT-EEEECTCCC--H---------------------------HHHHHHHHHHHCSEEEEEBSSSSS-BE
T ss_pred HHHHHHHHhcCCCcEEEEechhhccH---------------------------HHHHHHHHHhccCeEEEEeccccccce
Confidence 99999999988999999999999842 11223445554321 0110
Q ss_pred -----CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHH-HHhccCCCHHHH
Q 011286 359 -----DERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEE-LIEKVEVTPADV 430 (489)
Q Consensus 359 -----~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~-l~~~~~~spa~i 430 (489)
...-+|++|++...|.+.|.. ||....++.+++.++...|+++.....+..+.++... ++....-||.-.
T Consensus 143 ~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 143 IRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp EEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHH
T ss_pred eeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHH
Confidence 135789999999999999999 9999999999999999999998887777777665443 333444555433
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.9e-19 Score=173.93 Aligned_cols=179 Identities=21% Similarity=0.301 Sum_probs=139.5
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHh-CCCCCceEEEECCCCCcHHHHHHHHHHHcC---------CcEEEeec
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLN---------FDVYDLEL 281 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~-g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---------~~~~~l~~ 281 (489)
-|++|+-+.++|++++.+...-+.-.+..... =+.|.|-+|||||||||||+|++|+|+.+. -.++.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 57889999999999998887766543322111 257899999999999999999999999983 24567777
Q ss_pred Ccc------CChHHHHHHHHHcc-------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHH
Q 011286 282 SSV------EGNKDLRQILIATE-------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLN 348 (489)
Q Consensus 282 s~~------~~~~~L~~l~~~~~-------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 348 (489)
.++ ++.+-+.++|.+.. .-..++|||++++...|....... ++.+.-+..+.+|.
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~------------EpsDaIRvVNalLT 287 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRN------------EPSDAIRVVNALLT 287 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCC------------CCchHHHHHHHHHH
Confidence 665 45566666776542 234667999999987554322211 24566789999999
Q ss_pred hhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 349 FIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 349 ~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
+||.+... .++++.+|+|-.+.||.||.. |-|.+.++++|+..++..|++..+.
T Consensus 288 QlDrlK~~--~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 288 QLDRLKRY--PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred HHHHhccC--CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 99999765 569999999999999999999 9999999999999999999988764
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.77 E-value=1.1e-17 Score=165.47 Aligned_cols=179 Identities=15% Similarity=0.191 Sum_probs=127.4
Q ss_pred cccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCC---CceEEEECCCCCcHHHHHHHHHHHc-------CCcEEEeecC
Q 011286 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAW---KRGYLLYGPPGTGKSSLIAAMANYL-------NFDVYDLELS 282 (489)
Q Consensus 213 fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~---~rg~LL~GPpGtGKTsla~aiA~~l-------~~~~~~l~~s 282 (489)
+++++|.+++|+.|.+.+...... ....+.|... ..++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 678999999999998766544333 4444566643 3468999999999999999999875 2356666666
Q ss_pred ccC------ChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccC
Q 011286 283 SVE------GNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSS 356 (489)
Q Consensus 283 ~~~------~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~ 356 (489)
++. ....++.+|..+ .++||||||+|.+.. . +. .......+..|++.|+..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~--~--~~---------------~~~~~~~i~~Ll~~~e~~--- 140 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLAR--G--GE---------------KDFGKEAIDTLVKGMEDN--- 140 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc-cCCEEEEechhhhcc--C--Cc---------------cchHHHHHHHHHHHHhcc---
Confidence 542 245566777655 368999999999852 0 00 112345677788888874
Q ss_pred CCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHH
Q 011286 357 CGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEE 418 (489)
Q Consensus 357 ~g~~~iiI~TTN~~~-----~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ 418 (489)
...+++|++++..+ .++|+|.+ ||+.+|+||.++.+++..|++.++......+.++...
T Consensus 141 -~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~ 204 (261)
T TIGR02881 141 -RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKW 204 (261)
T ss_pred -CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHH
Confidence 23456666654332 37899999 9999999999999999999999997665555554433
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.77 E-value=9.5e-18 Score=171.42 Aligned_cols=191 Identities=20% Similarity=0.212 Sum_probs=142.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCC
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG 286 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~ 286 (489)
...|.+|++++|.++.++.+...+...... ...++++|||||||||||++|+++|++++.++..++...+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 346889999999999999887666533221 234568999999999999999999999999998887777777
Q ss_pred hHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccc---------c--
Q 011286 287 NKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLW---------S-- 355 (489)
Q Consensus 287 ~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~---------s-- 355 (489)
...+..++.....++||||||||.+.... ... |.+.++... +
T Consensus 90 ~~~l~~~l~~l~~~~vl~IDEi~~l~~~~------------------------~e~---l~~~~e~~~~~~~l~~~~~~~ 142 (328)
T PRK00080 90 PGDLAAILTNLEEGDVLFIDEIHRLSPVV------------------------EEI---LYPAMEDFRLDIMIGKGPAAR 142 (328)
T ss_pred hHHHHHHHHhcccCCEEEEecHhhcchHH------------------------HHH---HHHHHHhcceeeeeccCcccc
Confidence 78888888888889999999999884311 111 222222110 0
Q ss_pred ---CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHh-HHHHHhccCCCHHHHH
Q 011286 356 ---SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE-VEELIEKVEVTPADVA 431 (489)
Q Consensus 356 ---~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~~~~~spa~i~ 431 (489)
.......+|++||++..++++|.+ ||+..++|++++.+++.+++++........+.++ +..++....-+|..+.
T Consensus 143 ~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~ 220 (328)
T PRK00080 143 SIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIAN 220 (328)
T ss_pred ceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHH
Confidence 001236789999999999999988 9999999999999999999998887766666544 4445555556666555
Q ss_pred HHH
Q 011286 432 EQL 434 (489)
Q Consensus 432 ~~l 434 (489)
..+
T Consensus 221 ~~l 223 (328)
T PRK00080 221 RLL 223 (328)
T ss_pred HHH
Confidence 554
No 46
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.75 E-value=1.9e-17 Score=165.69 Aligned_cols=177 Identities=18% Similarity=0.229 Sum_probs=130.1
Q ss_pred cc-cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCC---CceEEEECCCCCcHHHHHHHHHHHcC-------CcEEEeec
Q 011286 213 FD-TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAW---KRGYLLYGPPGTGKSSLIAAMANYLN-------FDVYDLEL 281 (489)
Q Consensus 213 fd-~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~---~rg~LL~GPpGtGKTsla~aiA~~l~-------~~~~~l~~ 281 (489)
++ .++|.+++|+.|.+.+.. +..++.+.+.|... ..++||+||||||||++|+++|..+. -+++.+++
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 44 689999999999775554 66777778888764 44899999999999999999998873 26777776
Q ss_pred Ccc------CChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccccc
Q 011286 282 SSV------EGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWS 355 (489)
Q Consensus 282 s~~------~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s 355 (489)
+++ .+...++.+|..+ .++||||||||.+...+. . ..........|++.|+..
T Consensus 99 ~~l~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~~~~--~----------------~~~~~~~~~~Ll~~le~~-- 157 (284)
T TIGR02880 99 DDLVGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYRPDN--E----------------RDYGQEAIEILLQVMENQ-- 157 (284)
T ss_pred HHHhHhhcccchHHHHHHHHHc-cCcEEEEechhhhccCCC--c----------------cchHHHHHHHHHHHHhcC--
Confidence 554 1234556666654 458999999998853110 0 122345667888888753
Q ss_pred CCCCceEEEEecCCC--C---CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHh
Q 011286 356 SCGDERIIIFTTNHK--D---RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE 415 (489)
Q Consensus 356 ~~g~~~iiI~TTN~~--~---~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~ 415 (489)
..+++||++++.. + .++|+|.+ ||+.+|+||.++.+++..|+.+++...+..+.++
T Consensus 158 --~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~ 218 (284)
T TIGR02880 158 --RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAE 218 (284)
T ss_pred --CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHH
Confidence 2456777776643 2 25899999 9999999999999999999999998765544443
No 47
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=1.7e-17 Score=166.17 Aligned_cols=176 Identities=18% Similarity=0.236 Sum_probs=128.0
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCc---eEEEECCCCCcHHHHHHHHHHHcC-------CcEEEeecCc
Q 011286 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKR---GYLLYGPPGTGKSSLIAAMANYLN-------FDVYDLELSS 283 (489)
Q Consensus 214 d~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~r---g~LL~GPpGtGKTsla~aiA~~l~-------~~~~~l~~s~ 283 (489)
++++|.+++|++|.+.+. ++.....+.+.|...+. ++||+||||||||++|+++|..+. -+++.++.+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~-~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAA-LLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 479999999999988664 45556677778876542 389999999999999999999862 2577777655
Q ss_pred cC------ChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCC
Q 011286 284 VE------GNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSC 357 (489)
Q Consensus 284 ~~------~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~ 357 (489)
+. +......++..+ .++||||||+|.+..... . ..........|+..|+...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~~~~--~----------------~~~~~e~~~~L~~~me~~~--- 159 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYKPDN--E----------------RDYGSEAIEILLQVMENQR--- 159 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhccCCC--c----------------cchHHHHHHHHHHHHhcCC---
Confidence 41 233455566654 458999999998853110 0 1223566778888887632
Q ss_pred CCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHh
Q 011286 358 GDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE 415 (489)
Q Consensus 358 g~~~iiI~TTN~~~-----~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~ 415 (489)
+.++||++++... .++|+|.+ ||+.+|+|++++.+++.+|+..++......+.++
T Consensus 160 -~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~ 219 (287)
T CHL00181 160 -DDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE 219 (287)
T ss_pred -CCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh
Confidence 4477777775422 34699999 9999999999999999999999998765555443
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.75 E-value=3.5e-17 Score=165.31 Aligned_cols=185 Identities=19% Similarity=0.206 Sum_probs=133.6
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHH
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLR 291 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~ 291 (489)
+|++++|.+++++.+...+...... ...+.+++||||||||||+|++++|++++.++..++.+.......+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 6899999999999887766533322 12346799999999999999999999999998888776666667788
Q ss_pred HHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccc--------------cCC
Q 011286 292 QILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLW--------------SSC 357 (489)
Q Consensus 292 ~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~--------------s~~ 357 (489)
..+.....+.||||||||.+.... . ..|++.++... ...
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~~~------------------------~---e~l~~~~~~~~~~~v~~~~~~~~~~~~~ 126 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSPAV------------------------E---ELLYPAMEDFRLDIVIGKGPSARSVRLD 126 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCHHH------------------------H---HHhhHHHhhhheeeeeccCccccceeec
Confidence 888777888999999999885311 1 11222222110 001
Q ss_pred CCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHh-HHHHHhccCCCHHHHHHH
Q 011286 358 GDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE-VEELIEKVEVTPADVAEQ 433 (489)
Q Consensus 358 g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~~~~~spa~i~~~ 433 (489)
....++|++||++..+++++.+ ||..++++++++.++..++++.........+.++ +..++....-+|..+...
T Consensus 127 ~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~l 201 (305)
T TIGR00635 127 LPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRL 201 (305)
T ss_pred CCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHH
Confidence 1237899999999999999998 9999999999999999999988776555555443 334444444455544333
No 49
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.74 E-value=1.8e-16 Score=152.30 Aligned_cols=180 Identities=19% Similarity=0.270 Sum_probs=148.3
Q ss_pred CCCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCc
Q 011286 199 TEIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFD 275 (489)
Q Consensus 199 ~~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~ 275 (489)
++...++....|..+++|+|.+.+|+.|++....|+.. . +...+||||++||||||+++|+.+++ |+.
T Consensus 12 ~~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--------~-pannvLL~G~rGtGKSSlVkall~~y~~~GLR 82 (249)
T PF05673_consen 12 SGYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQG--------L-PANNVLLWGARGTGKSSLVKALLNEYADQGLR 82 (249)
T ss_pred CCcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC--------C-CCcceEEecCCCCCHHHHHHHHHHHHhhcCce
Confidence 34577887788889999999999999999999988864 2 35789999999999999999999987 778
Q ss_pred EEEeecCccCChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccccc
Q 011286 276 VYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWS 355 (489)
Q Consensus 276 ~~~l~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s 355 (489)
++.+.-..+..-..|...+...+.+-|||+||+. +. ........|-..|||-..
T Consensus 83 lIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLs--Fe------------------------~~d~~yk~LKs~LeGgle 136 (249)
T PF05673_consen 83 LIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLS--FE------------------------EGDTEYKALKSVLEGGLE 136 (249)
T ss_pred EEEECHHHhccHHHHHHHHhcCCCCEEEEecCCC--CC------------------------CCcHHHHHHHHHhcCccc
Confidence 8888888888888888888888889999999865 32 223455778888999887
Q ss_pred CCCCceEEEEecCCCCCCCcccc----------C-----------CCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCCh
Q 011286 356 SCGDERIIIFTTNHKDRLDPALL----------R-----------PGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 413 (489)
Q Consensus 356 ~~g~~~iiI~TTN~~~~LDpALl----------R-----------pGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 413 (489)
..+++++|.+|+|+...+..... . ..||...|.|..|+.++..+|++.|+...+..+.
T Consensus 137 ~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~ 215 (249)
T PF05673_consen 137 ARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELD 215 (249)
T ss_pred cCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 78899999999997644432211 1 2399999999999999999999999987776665
No 50
>PRK04195 replication factor C large subunit; Provisional
Probab=99.71 E-value=2.8e-16 Score=168.60 Aligned_cols=172 Identities=22% Similarity=0.292 Sum_probs=129.6
Q ss_pred CceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 201 ~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
.|.. ...|.+|++|+|++++++.+...+..+.. |.+ ++++|||||||||||++|+++|++++++++.++
T Consensus 3 ~W~e--KyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~-~~~lLL~GppG~GKTtla~ala~el~~~~ieln 71 (482)
T PRK04195 3 PWVE--KYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKP-KKALLLYGPPGVGKTSLAHALANDYGWEVIELN 71 (482)
T ss_pred Cchh--hcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCC-CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence 3654 67899999999999999999888876552 222 679999999999999999999999999999999
Q ss_pred cCccCChHHHHHHHHHc--------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc
Q 011286 281 LSSVEGNKDLRQILIAT--------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG 352 (489)
Q Consensus 281 ~s~~~~~~~L~~l~~~~--------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 352 (489)
.++......+..++... ..+.||+|||+|.+... .....+..|++.++.
T Consensus 72 asd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~-----------------------~d~~~~~aL~~~l~~ 128 (482)
T PRK04195 72 ASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN-----------------------EDRGGARAILELIKK 128 (482)
T ss_pred ccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc-----------------------cchhHHHHHHHHHHc
Confidence 99877666676665433 24789999999988531 112234556666663
Q ss_pred cccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChH
Q 011286 353 LWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL 414 (489)
Q Consensus 353 l~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~ 414 (489)
. ...+|+++|.+..+++.-+| +....|+|+.|+..++..+++..+...+..+.+
T Consensus 129 ~------~~~iIli~n~~~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~ 182 (482)
T PRK04195 129 A------KQPIILTANDPYDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEGIECDD 182 (482)
T ss_pred C------CCCEEEeccCccccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 2 23467788998888873334 334679999999999999998887655554433
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.70 E-value=3.7e-16 Score=176.32 Aligned_cols=162 Identities=27% Similarity=0.237 Sum_probs=117.6
Q ss_pred Ccc-cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCCh---
Q 011286 212 TFD-TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN--- 287 (489)
Q Consensus 212 ~fd-~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~--- 287 (489)
.|+ +++|.+++|+.|.+.+..... .+...+..+||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 317 ~l~~~~~G~~~~k~~i~~~~~~~~~-------~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i 389 (775)
T TIGR00763 317 ILDEDHYGLKKVKERILEYLAVQKL-------RGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEI 389 (775)
T ss_pred HhhhhcCChHHHHHHHHHHHHHHHh-------hcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHH
Confidence 344 378999999999887664332 122334479999999999999999999999999999987665322
Q ss_pred ------------HHHHHHHHHc-cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccc-
Q 011286 288 ------------KDLRQILIAT-ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL- 353 (489)
Q Consensus 288 ------------~~L~~l~~~~-~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl- 353 (489)
..+.+.|... ....||||||||.+... . .....+.||..||..
T Consensus 390 ~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~--~---------------------~~~~~~aLl~~ld~~~ 446 (775)
T TIGR00763 390 RGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSS--F---------------------RGDPASALLEVLDPEQ 446 (775)
T ss_pred cCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCc--c---------------------CCCHHHHHHHhcCHHh
Confidence 3344555543 34569999999998631 0 011234566666531
Q ss_pred ---cc-------CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 354 ---WS-------SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 354 ---~s-------~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
.. ..-.++++|+|||..+.++|+|++ ||+ .|+|+.++.+++..|+++|+.
T Consensus 447 ~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 447 NNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred cCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHH
Confidence 00 001358899999999999999999 996 689999999999999999873
No 52
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=4.8e-16 Score=163.46 Aligned_cols=162 Identities=15% Similarity=0.283 Sum_probs=121.8
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
...|.+|++++|++.+.+.|...+. . | ..+..|||+||||||||++|+++|+.++.
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~----~-------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALK----S-------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 5679999999999988887665543 1 1 23456999999999999999999999875
Q ss_pred ------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 275 ------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 275 ------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+++.++...-.+.+.++++.... .+..|+||||+|.+.
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------------------ 134 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------------------ 134 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------------------
Confidence 35556654434455666655433 235699999999883
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChH
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL 414 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~ 414 (489)
...++.||..|+.- ...+++|++|+.++.|.+++++ |+ .++.|..++.++....++..+..++..+.+
T Consensus 135 ---~~A~NALLKtLEEP----p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~ 202 (484)
T PRK14956 135 ---DQSFNALLKTLEEP----PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQ 202 (484)
T ss_pred ---HHHHHHHHHHhhcC----CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 23567788888762 3568899999999999999998 87 468999999998888888777655544433
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.70 E-value=6.2e-16 Score=149.70 Aligned_cols=184 Identities=21% Similarity=0.220 Sum_probs=141.4
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCCh
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN 287 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~ 287 (489)
-+|.+|++.+|++.+|+.+.-.|.....+ ...--.+|||||||.||||||..||+++|.++-..+...++..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~ 91 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP 91 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh
Confidence 35899999999999998876555433322 2234579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccc--------ccCC--
Q 011286 288 KDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL--------WSSC-- 357 (489)
Q Consensus 288 ~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl--------~s~~-- 357 (489)
.+|..++.......|||||||+.+.+.... -|.-.|+.. ....
T Consensus 92 gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE---------------------------~LYpaMEDf~lDI~IG~gp~Ars 144 (332)
T COG2255 92 GDLAAILTNLEEGDVLFIDEIHRLSPAVEE---------------------------VLYPAMEDFRLDIIIGKGPAARS 144 (332)
T ss_pred hhHHHHHhcCCcCCeEEEehhhhcChhHHH---------------------------HhhhhhhheeEEEEEccCCccce
Confidence 999999999999999999999998542111 111222211 0000
Q ss_pred ----CCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHh-HHHHHhccCCCHH
Q 011286 358 ----GDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE-VEELIEKVEVTPA 428 (489)
Q Consensus 358 ----g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~~~~~spa 428 (489)
-...-+|++|.+...|...|.. ||.+..++.+++.++...|+.+....-+..+.++ ..+++....-||.
T Consensus 145 v~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 145 IRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred EeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 0235789999999999999988 9999999999999999999999887767776554 4444445556665
No 54
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=8.1e-16 Score=163.55 Aligned_cols=157 Identities=20% Similarity=0.362 Sum_probs=118.2
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
..+|.+|++++|++.+++.+...+. . ...+.++|||||||||||++|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~----~--------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK----K--------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 4689999999999988776654333 1 124567999999999999999999999864
Q ss_pred ------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 275 ------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 275 ------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+++.++.+.-.+.+.++++.... ....||+|||+|.+..
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~----------------------- 131 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK----------------------- 131 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------------------
Confidence 57777776544556677665443 2357999999998832
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE 409 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~ 409 (489)
..++.||..++.. ++.+++|++||.+..+++++.+ |+. .++|..++.++...+++..+...+
T Consensus 132 ----~a~~~LLk~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~eg 193 (472)
T PRK14962 132 ----EAFNALLKTLEEP----PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEG 193 (472)
T ss_pred ----HHHHHHHHHHHhC----CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcC
Confidence 2346678888763 3457778888888899999998 774 699999999998888877665443
No 55
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=8.8e-16 Score=167.20 Aligned_cols=163 Identities=16% Similarity=0.279 Sum_probs=126.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
.++|.+|++|+|++.+++.|...+. +...+..||||||+|||||++++++|+.++.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~------------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALD------------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHh------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 4679999999999999887766543 1233567999999999999999999998864
Q ss_pred ------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 275 ------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 275 ------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+++.+|.++-.+.+++++++... .+..|+||||+|.+.
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------------------ 132 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------------------ 132 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------------------
Confidence 46666665544556777777653 235799999999883
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHh
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE 415 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~ 415 (489)
....+.||..|+.. ...++||++||.+++|.+.+++ |+ .++.|..++.++....++..+..++..+.++
T Consensus 133 ---~~A~NALLKtLEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~e 201 (830)
T PRK07003 133 ---NHAFNAMLKTLEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQ 201 (830)
T ss_pred ---HHHHHHHHHHHHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHH
Confidence 23457788888874 3468899999999999999998 87 6799999999999988888887665554433
No 56
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=4.2e-16 Score=167.72 Aligned_cols=179 Identities=17% Similarity=0.283 Sum_probs=132.8
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
..+|.+|++|+|++.+++.|.+.+.. ...+..|||+||+|||||++++++|+.++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 46899999999999999877765541 223567999999999999999999999875
Q ss_pred -----------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccc
Q 011286 275 -----------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS 331 (489)
Q Consensus 275 -----------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~ 331 (489)
+++.++.++-.+.+++++++... .+..|+||||+|.+.
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------------- 137 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------------- 137 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-------------------
Confidence 56666665545567777777553 235799999999883
Q ss_pred cccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC
Q 011286 332 ACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP 411 (489)
Q Consensus 332 ~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~ 411 (489)
....+.||..|+.- .+.++||++||.+++|.+.+++ |+ .++.|..++.++....++..+..++..
T Consensus 138 --------~~AaNALLKTLEEP----P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~ 202 (700)
T PRK12323 138 --------NHAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIA 202 (700)
T ss_pred --------HHHHHHHHHhhccC----CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCC
Confidence 23457788888873 3568999999999999999998 87 679999999999988888777655544
Q ss_pred ChHh-HHHHHhccCCCHHHHH
Q 011286 412 LFLE-VEELIEKVEVTPADVA 431 (489)
Q Consensus 412 l~~~-i~~l~~~~~~spa~i~ 431 (489)
..++ +..++...+-++.+..
T Consensus 203 ~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 203 HEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 4333 2333333334444433
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.68 E-value=2.8e-16 Score=176.26 Aligned_cols=201 Identities=18% Similarity=0.163 Sum_probs=136.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEE
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 278 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~~ 278 (489)
.|..+|.++|.++..+.+++.|. ...+.++||+||||||||++++++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 47789999999888777665443 2346789999999999999999999987 788999
Q ss_pred eecCccC--------ChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHH
Q 011286 279 LELSSVE--------GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLN 348 (489)
Q Consensus 279 l~~s~~~--------~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 348 (489)
++++.+. .+..+++++..+. .++||||||||.+.+.....+ . .....+-|+.
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~-----------------~-~~~~~~~L~~ 305 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSG-----------------G-SMDASNLLKP 305 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCC-----------------c-cHHHHHHHHH
Confidence 9987663 2367888887753 489999999999975321100 0 0111122333
Q ss_pred hhcccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC--CC--CChH-hHHH
Q 011286 349 FIDGLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT--EH--PLFL-EVEE 418 (489)
Q Consensus 349 ~ldgl~s~~g~~~iiI~TTN~~~-----~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~--~~--~l~~-~i~~ 418 (489)
.+.. +++.+|++||..+ .+|+||.| ||. .|+++.|+.+++..|++...... .| .+.+ .+..
T Consensus 306 ~l~~------g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~ 376 (731)
T TIGR02639 306 ALSS------GKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEA 376 (731)
T ss_pred HHhC------CCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHH
Confidence 3332 4688899998643 57999999 997 69999999999999998755431 12 2222 2222
Q ss_pred HHhccCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 011286 419 LIEKVEVTPADVAEQLMRDEVPKIALSGLIQFLQIKKR 456 (489)
Q Consensus 419 l~~~~~~spa~i~~~l~~~~~~~~al~~l~~~l~~~~~ 456 (489)
++. ++.. ++....-|+.|++-+.++....+.
T Consensus 377 ~~~---ls~r----yi~~r~~P~kai~lld~a~a~~~~ 407 (731)
T TIGR02639 377 AVE---LSAR----YINDRFLPDKAIDVIDEAGASFRL 407 (731)
T ss_pred HHH---hhhc----ccccccCCHHHHHHHHHhhhhhhc
Confidence 221 1111 111223589999888887765554
No 58
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.5e-15 Score=162.37 Aligned_cols=159 Identities=25% Similarity=0.225 Sum_probs=119.0
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHH---
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLR--- 291 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~--- 291 (489)
+-.|.+++|++|+++|.-.... +.-...-+||+||||+|||||+++||..+|..++.+++..+.++.+++
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 3467889999999988633322 222234688999999999999999999999999999999998777765
Q ss_pred ---------HHHHHc----cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccC--
Q 011286 292 ---------QILIAT----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSS-- 356 (489)
Q Consensus 292 ---------~l~~~~----~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~-- 356 (489)
++++.+ ....+++|||||.+.. +- ...--+.||..+|.-...
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s--s~---------------------rGDPaSALLEVLDPEQN~~F 453 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS--SF---------------------RGDPASALLEVLDPEQNNTF 453 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCCeEEeechhhccC--CC---------------------CCChHHHHHhhcCHhhcCch
Confidence 233332 2356999999999853 11 111224555555531100
Q ss_pred ---------CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 357 ---------CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 357 ---------~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
.-.+|++|+|+|..+.++.+|+. ||.. |+++-++.++..+|+++||-
T Consensus 454 ~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RMEi-I~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 454 SDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RMEV-IRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hhccccCccchhheEEEeecCccccCChHHhc--ceee-eeecCCChHHHHHHHHHhcc
Confidence 01358999999999999999999 9965 99999999999999999985
No 59
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.67 E-value=1.6e-15 Score=153.16 Aligned_cols=151 Identities=26% Similarity=0.355 Sum_probs=110.4
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChH
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNK 288 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~ 288 (489)
+|.+||+++|++.+-..- .-|...+ ....-.+++|||||||||||||+.||+.++.+|..++... .+.+
T Consensus 19 RP~~lde~vGQ~HLlg~~-~~lrr~v---------~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvk 87 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEG-KPLRRAV---------EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVK 87 (436)
T ss_pred CCCCHHHhcChHhhhCCC-chHHHHH---------hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHH
Confidence 589999999987664221 1111111 1222347999999999999999999999999999998654 3578
Q ss_pred HHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceE
Q 011286 289 DLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERI 362 (489)
Q Consensus 289 ~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~i 362 (489)
+++.++..+ .++.|||||||+.+-. .....||-.++. +.++
T Consensus 88 dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK---------------------------~QQD~lLp~vE~------G~ii 134 (436)
T COG2256 88 DLREIIEEARKNRLLGRRTILFLDEIHRFNK---------------------------AQQDALLPHVEN------GTII 134 (436)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEehhhhcCh---------------------------hhhhhhhhhhcC------CeEE
Confidence 899888766 2479999999998832 112346666664 3467
Q ss_pred EEEec--CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 363 IIFTT--NHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 363 iI~TT--N~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
+|++| |..-.|.|||++ |. .+.++.+.+.++.++++++-+.
T Consensus 135 lIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 135 LIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred EEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHh
Confidence 77655 345689999998 65 5589999999999999988443
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.7e-15 Score=163.43 Aligned_cols=160 Identities=16% Similarity=0.281 Sum_probs=124.0
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
..+|.+|++|+|++.+++.|...+. ....+..|||+||||||||++|+++|+.++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~------------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALE------------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 4579999999999999888866554 1233568999999999999999999999865
Q ss_pred ------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 275 ------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 275 ------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+++.++.++-.+.+.+++++... .+..|++|||+|.+-.
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~----------------------- 132 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST----------------------- 132 (702)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------------------
Confidence 56777776555667788877554 2357999999998732
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
...+.||..|+.. .+.+.+|++|+.+..+.+.+++ |+ .+++|..++.++....++..+..++...
T Consensus 133 ----~A~NALLKtLEEP----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~i 197 (702)
T PRK14960 133 ----HSFNALLKTLEEP----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAA 197 (702)
T ss_pred ----HHHHHHHHHHhcC----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCC
Confidence 3456788888763 3457888888889999989887 77 5699999999998888887776555444
No 61
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.9e-15 Score=155.11 Aligned_cols=161 Identities=16% Similarity=0.242 Sum_probs=118.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
...|.+|++++|++.+++.+...+. . ...+..|||+||||||||++|+++|+.++.
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~-----------~-~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLS-----------L-GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHH-----------c-CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 4578999999999998887765443 1 234567999999999999999999999852
Q ss_pred ------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 275 ------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 275 ------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+++.++.++-...+.+++++... ....|++|||+|.+.
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------------------ 132 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------------------ 132 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------------------
Confidence 45555554333445677666543 234699999999873
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCCh
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 413 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 413 (489)
....+.||..++.. +..+.+|++|+.++.+.+++.. |+ ..++|++++.++....+...+...+....
T Consensus 133 ---~~a~naLLk~lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~ 199 (363)
T PRK14961 133 ---RHSFNALLKTLEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTD 199 (363)
T ss_pred ---HHHHHHHHHHHhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 12345678887763 3456788888888999999987 76 57999999999998888876665544443
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=99.66 E-value=2.6e-15 Score=152.94 Aligned_cols=162 Identities=18% Similarity=0.231 Sum_probs=115.6
Q ss_pred ceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----CcE
Q 011286 202 WQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FDV 276 (489)
Q Consensus 202 w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-----~~~ 276 (489)
|.. ..+|.+|++++|++++.+.+...+. . |. ..++|||||||||||++|.++|+++. ..+
T Consensus 3 w~~--kyrP~~l~~~~g~~~~~~~L~~~~~----~-------~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 67 (319)
T PLN03025 3 WVE--KYRPTKLDDIVGNEDAVSRLQVIAR----D-------GN--MPNLILSGPPGTGKTTSILALAHELLGPNYKEAV 67 (319)
T ss_pred hhh--hcCCCCHHHhcCcHHHHHHHHHHHh----c-------CC--CceEEEECCCCCCHHHHHHHHHHHHhcccCccce
Confidence 554 6789999999999988776654322 1 11 23699999999999999999999972 346
Q ss_pred EEeecCccCChHHHHHHHHH---c------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHH
Q 011286 277 YDLELSSVEGNKDLRQILIA---T------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLL 347 (489)
Q Consensus 277 ~~l~~s~~~~~~~L~~l~~~---~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 347 (489)
+.++.++..+.+.++..+.. . ....|++|||+|.+.. ...+.|+
T Consensus 68 ~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~---------------------------~aq~aL~ 120 (319)
T PLN03025 68 LELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS---------------------------GAQQALR 120 (319)
T ss_pred eeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH---------------------------HHHHHHH
Confidence 67777765555555554422 1 2357999999998842 1124456
Q ss_pred HhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 348 NFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 348 ~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
..++... ....+|++||....+.++|.+ |+ ..++|+.++.++....++..+..++..+
T Consensus 121 ~~lE~~~----~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i 178 (319)
T PLN03025 121 RTMEIYS----NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPY 178 (319)
T ss_pred HHHhccc----CCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 6665431 234578899999999999998 76 4699999999998888877766554443
No 63
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.7e-15 Score=158.64 Aligned_cols=160 Identities=23% Similarity=0.302 Sum_probs=115.8
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHH---
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLR--- 291 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~--- 291 (489)
+-.|..++|++|++.|.- -+-.|-.-..-++|+||||+||||++++||..+|..|+.+++..+.+..+++
T Consensus 412 DHYgm~dVKeRILEfiAV-------~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAV-------GKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHH-------HhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 456778999999987752 1222344455689999999999999999999999999999999886555543
Q ss_pred ------------HHHHHc-cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhc-------
Q 011286 292 ------------QILIAT-ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFID------- 351 (489)
Q Consensus 292 ------------~l~~~~-~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld------- 351 (489)
+.+... ....+++|||||.+.. .-.+ ... +.||..||
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~--g~qG------------------DPa---sALLElLDPEQNanF 541 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS--GHQG------------------DPA---SALLELLDPEQNANF 541 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC--CCCC------------------ChH---HHHHHhcChhhccch
Confidence 333333 2356899999999962 1111 111 23333332
Q ss_pred --ccccCC--CCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011286 352 --GLWSSC--GDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 407 (489)
Q Consensus 352 --gl~s~~--g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 407 (489)
....-+ -..+++|+|.|..+.++|+|+. ||.+ |+++-+..++.-.|+++||-.
T Consensus 542 lDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RMEv-IelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 542 LDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RMEV-IELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred hhhccccccchhheEEEEeccccccCChhhhh--hhhe-eeccCccHHHHHHHHHHhhhh
Confidence 211100 1358999999999999999999 9975 999999999999999999954
No 64
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.65 E-value=7.8e-15 Score=148.89 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=116.0
Q ss_pred CCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
..|.. ...|.+|++++|++++++.+...+. .| ..+..+|||||||+|||++++++|++++.+++.+
T Consensus 9 ~~w~~--kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i 74 (316)
T PHA02544 9 FMWEQ--KYRPSTIDECILPAADKETFKSIVK-----------KG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFV 74 (316)
T ss_pred Cccee--ccCCCcHHHhcCcHHHHHHHHHHHh-----------cC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEe
Confidence 46776 6789999999999999888776553 12 2355778899999999999999999999999999
Q ss_pred ecCccCChHHHHHHH----HHc---cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc
Q 011286 280 ELSSVEGNKDLRQIL----IAT---ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG 352 (489)
Q Consensus 280 ~~s~~~~~~~L~~l~----~~~---~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 352 (489)
+++. .....++..+ ... ..+.||+|||+|.+.. .. ....|...++.
T Consensus 75 ~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-----------------------~~---~~~~L~~~le~ 127 (316)
T PHA02544 75 NGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-----------------------AD---AQRHLRSFMEA 127 (316)
T ss_pred ccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-----------------------HH---HHHHHHHHHHh
Confidence 9887 3233333322 222 3578999999997721 01 11233444554
Q ss_pred cccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011286 353 LWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYL 405 (489)
Q Consensus 353 l~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l 405 (489)
.. ....+|+|||.+..++|++.+ |+. .+.|+.|+.+++..+++.++
T Consensus 128 ~~----~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 128 YS----KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred cC----CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 32 346788999999999999998 885 68999999999887766543
No 65
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=6.5e-15 Score=157.39 Aligned_cols=164 Identities=18% Similarity=0.275 Sum_probs=123.4
Q ss_pred CceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------
Q 011286 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------ 274 (489)
Q Consensus 201 ~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------ 274 (489)
.|.. ..+|.+|++++|++.+.+.+...+. ....+.+|||+||||||||++|+++|+.++.
T Consensus 10 ~la~--kyRP~~f~dliGq~~vv~~L~~ai~------------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~ 75 (507)
T PRK06645 10 PFAR--KYRPSNFAELQGQEVLVKVLSYTIL------------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITE 75 (507)
T ss_pred chhh--hhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccc
Confidence 4543 5789999999999998887655433 1233568999999999999999999999854
Q ss_pred ----------------------cEEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhccc
Q 011286 275 ----------------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIP 326 (489)
Q Consensus 275 ----------------------~~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~ 326 (489)
+++.++..+-.+.++++.++.... ...|++|||+|.+.
T Consensus 76 ~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-------------- 141 (507)
T PRK06645 76 NTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-------------- 141 (507)
T ss_pred CcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------
Confidence 445555544445677888776552 35799999999873
Q ss_pred ccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 327 DLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 327 ~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
...++.||..|+.. +..+++|++|+.++++++++.+ |+ ..++|..++.++....++..+.
T Consensus 142 -------------~~a~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~ 201 (507)
T PRK06645 142 -------------KGAFNALLKTLEEP----PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITK 201 (507)
T ss_pred -------------HHHHHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHH
Confidence 23456788888753 3557888888999999999987 77 5689999999999888888776
Q ss_pred cCCCCC
Q 011286 407 ITEHPL 412 (489)
Q Consensus 407 ~~~~~l 412 (489)
.++...
T Consensus 202 ~egi~i 207 (507)
T PRK06645 202 QENLKT 207 (507)
T ss_pred HcCCCC
Confidence 554433
No 66
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.64 E-value=3e-15 Score=169.64 Aligned_cols=201 Identities=16% Similarity=0.186 Sum_probs=133.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEE
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 278 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~~ 278 (489)
.|..++.++|.++.-+++++.+. ...+.+++|+||||||||++|+++|..+ +..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 47789999999887666655443 2345689999999999999999999986 356888
Q ss_pred eecCccC--------ChHHHHHHHHHcc---CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHH
Q 011286 279 LELSSVE--------GNKDLRQILIATE---NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLL 347 (489)
Q Consensus 279 l~~s~~~--------~~~~L~~l~~~~~---~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 347 (489)
++++.+. -...++.++.... .++||||||||.+.+.+...+ .. ..-+-|+
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~----------------~~---d~~n~Lk 309 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG----------------QG---DAANLLK 309 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc----------------cc---cHHHHhh
Confidence 8887653 1257888887653 579999999999975322100 01 1111233
Q ss_pred HhhcccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC--CCC--ChH-hHH
Q 011286 348 NFIDGLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT--EHP--LFL-EVE 417 (489)
Q Consensus 348 ~~ldgl~s~~g~~~iiI~TTN~~~-----~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~--~~~--l~~-~i~ 417 (489)
..+. .+++.+|+||+..+ .+||||.| ||. .|.++.|+.++...|++.+.... .|. +.+ .+.
T Consensus 310 p~l~------~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~ 380 (852)
T TIGR03345 310 PALA------RGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVV 380 (852)
T ss_pred HHhh------CCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHH
Confidence 3332 24688899888653 48999999 996 69999999999999975544321 122 222 222
Q ss_pred HHHhccCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 011286 418 ELIEKVEVTPADVAEQLMRDEVPKIALSGLIQFLQIKKRE 457 (489)
Q Consensus 418 ~l~~~~~~spa~i~~~l~~~~~~~~al~~l~~~l~~~~~~ 457 (489)
.++. ++.. ++-...-|+.|++-+.++....+..
T Consensus 381 ~~~~---ls~r----yi~~r~LPDKAIdlldea~a~~~~~ 413 (852)
T TIGR03345 381 AAVE---LSHR----YIPGRQLPDKAVSLLDTACARVALS 413 (852)
T ss_pred HHHH---Hccc----ccccccCccHHHHHHHHHHHHHHHh
Confidence 2222 1111 1112346888888888877766654
No 67
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.3e-15 Score=157.01 Aligned_cols=160 Identities=13% Similarity=0.225 Sum_probs=124.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc--------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-------------- 272 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-------------- 272 (489)
...|.+|++|+|++.+++.+.+.+. . ...+.+|||+||||+|||++|+++|..+
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~-----------~-~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFT-----------L-NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------c-CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 4679999999999988876654332 1 2345789999999999999999999865
Q ss_pred ----------CCcEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 273 ----------NFDVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 273 ----------~~~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
..+++.+|.++-.+.++++.++... .+.-|++|||+|.+.
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------------------ 129 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------------------ 129 (491)
T ss_pred HHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------------------
Confidence 3467888887666778888887654 235799999999873
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
...++.||..|+.. ...+++|++|+.++++.+.++. |+ ..++|..++.++....+...+..++..+
T Consensus 130 ---~~A~NaLLK~LEeP----p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i 195 (491)
T PRK14964 130 ---NSAFNALLKTLEEP----APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEH 195 (491)
T ss_pred ---HHHHHHHHHHHhCC----CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCC
Confidence 23567889998874 3558888889999999999988 76 5699999999998888887776554443
No 68
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.1e-15 Score=158.97 Aligned_cols=160 Identities=17% Similarity=0.319 Sum_probs=122.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
..+|.+|++|+|++.+++.+...+.. ...+..|||+||||||||++|+++|+.++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 46799999999999998888766541 223557999999999999999999999854
Q ss_pred ------------cEEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 275 ------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 275 ------------~~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+++.++.++-.+.+.++.++.... +..|++|||+|.+..
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~----------------------- 133 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG----------------------- 133 (509)
T ss_pred HHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------------------
Confidence 367777766556677887775532 346999999998832
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
...+.||..|+.. .+.+++|++|+.+.++.+.++. |+ ..++|..++.++....++..+...+...
T Consensus 134 ----~a~naLLk~LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~ 198 (509)
T PRK14958 134 ----HSFNALLKTLEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEF 198 (509)
T ss_pred ----HHHHHHHHHHhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3457788888874 3457888888889999989887 76 5689999999888777766665554433
No 69
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.63 E-value=2.4e-15 Score=171.17 Aligned_cols=201 Identities=15% Similarity=0.147 Sum_probs=135.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEE
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 278 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~~ 278 (489)
.|..++.++|.+..-+.+++.+. ...+.+++|+||||||||++++++|..+ +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 46789999999887666665443 3346789999999999999999999986 678888
Q ss_pred eecCccC--------ChHHHHHHHHHc---cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHH
Q 011286 279 LELSSVE--------GNKDLRQILIAT---ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLL 347 (489)
Q Consensus 279 l~~s~~~--------~~~~L~~l~~~~---~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 347 (489)
++++.+. ....++.++... ..++||||||||.+.+..... . .....+-|.
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~------------------~-~~d~~~~Lk 295 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE------------------G-AMDAGNMLK 295 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc------------------c-hhHHHHHhc
Confidence 8877652 124677777655 358999999999997522110 0 011111122
Q ss_pred HhhcccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC--CCCC---hHhHH
Q 011286 348 NFIDGLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT--EHPL---FLEVE 417 (489)
Q Consensus 348 ~~ldgl~s~~g~~~iiI~TTN~~~-----~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~--~~~l---~~~i~ 417 (489)
..+ . .+.+.+|++||..+ .+|+||.| ||.. |.++.|+.+++..|++.+.... .|.+ ...+.
T Consensus 296 ~~l----~--~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~~-i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~ 366 (852)
T TIGR03346 296 PAL----A--RGELHCIGATTLDEYRKYIEKDAALER--RFQP-VFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIV 366 (852)
T ss_pred hhh----h--cCceEEEEeCcHHHHHHHhhcCHHHHh--cCCE-EEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHH
Confidence 222 1 24688899888764 47999999 9975 8999999999999888764432 2222 22333
Q ss_pred HHHhccCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 011286 418 ELIEKVEVTPADVAEQLMRDEVPKIALSGLIQFLQIKKRE 457 (489)
Q Consensus 418 ~l~~~~~~spa~i~~~l~~~~~~~~al~~l~~~l~~~~~~ 457 (489)
..+ .+|...| ....-|+.|++-+.++....+..
T Consensus 367 ~~~---~ls~~yi----~~r~lPdkAidlld~a~a~~~~~ 399 (852)
T TIGR03346 367 AAA---TLSHRYI----TDRFLPDKAIDLIDEAAARIRME 399 (852)
T ss_pred HHH---Hhccccc----cccCCchHHHHHHHHHHHHHHhh
Confidence 332 2332222 22345999999999888776654
No 70
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.62 E-value=1e-14 Score=153.67 Aligned_cols=151 Identities=23% Similarity=0.320 Sum_probs=111.9
Q ss_pred cCCCCCcccccCCHHHHHH---HHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCc
Q 011286 207 LDHPATFDTLAMDFDMKKM---IMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~---i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~ 283 (489)
..+|.+|++++|++.+.+. +...+. . ....++||+||||||||++|+++|+.++.+++.++.+.
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~----~---------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIE----A---------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHH----c---------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 4579999999999887544 444332 1 22348999999999999999999999999999998765
Q ss_pred cCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCC
Q 011286 284 VEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSC 357 (489)
Q Consensus 284 ~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~ 357 (489)
. +...++.++.... .+.||||||||.+.. .....|+..++.
T Consensus 72 ~-~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~---------------------------~~q~~LL~~le~----- 118 (413)
T PRK13342 72 S-GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK---------------------------AQQDALLPHVED----- 118 (413)
T ss_pred c-cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH---------------------------HHHHHHHHHhhc-----
Confidence 4 3456666665442 578999999998742 122345666654
Q ss_pred CCceEEEEec--CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011286 358 GDERIIIFTT--NHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 407 (489)
Q Consensus 358 g~~~iiI~TT--N~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 407 (489)
..+++|++| |....++++|++ |+ ..+.|+.++.++...+++..+..
T Consensus 119 -~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 119 -GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred -CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 235666554 344689999999 88 67999999999999999887653
No 71
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.62 E-value=3.4e-15 Score=169.59 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=115.9
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEE
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYD 278 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~~ 278 (489)
.|..+|.++|.+..-+++++.|. ...+.+++|+||||||||++|+++|..+ +.+++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 46789999999887666666554 3345689999999999999999999998 789999
Q ss_pred eecCccC--------ChHHHHHHHHHc---cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHH
Q 011286 279 LELSSVE--------GNKDLRQILIAT---ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLL 347 (489)
Q Consensus 279 l~~s~~~--------~~~~L~~l~~~~---~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 347 (489)
++++.+. ....++.+|... ..++||||||||.+.+.....+ .......| .
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~----------------~~d~~~~l---k 300 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG----------------AMDAGNML---K 300 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc----------------chhHHHHh---c
Confidence 9888752 134678887653 4589999999999975321100 11111112 2
Q ss_pred HhhcccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011286 348 NFIDGLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 407 (489)
Q Consensus 348 ~~ldgl~s~~g~~~iiI~TTN~~~-----~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 407 (489)
..+ . .+++.+|+||+..+ .+|+||.| ||+ .|.++.|+.+++..+++.....
T Consensus 301 p~l----~--~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 301 PAL----A--RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred chh----h--cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 222 1 25688999999877 48999999 998 4889999999999988776543
No 72
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.1e-14 Score=158.98 Aligned_cols=160 Identities=17% Similarity=0.305 Sum_probs=122.0
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
..+|.+|++|+|++.+++.+...+.. ...+..|||+||||||||++|+++|+.++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDL------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 35799999999999998877655441 223567999999999999999999999865
Q ss_pred ------------cEEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 275 ------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 275 ------------~~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+++.++.++-.+.+.++++..... ..-|++|||+|.+.
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------------------ 132 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------------------ 132 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------------------
Confidence 455566554334566777665432 35699999999883
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
....+.||..|+.- .+.+++|++|+.+..|.+.++. |+ .+++|..++.++....+...+..++...
T Consensus 133 ---~~a~NALLKtLEEP----p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~ 198 (647)
T PRK07994 133 ---RHSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPF 198 (647)
T ss_pred ---HHHHHHHHHHHHcC----CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 34568899988873 4567888888899999999998 85 7899999999999888887775444333
No 73
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=9e-15 Score=162.08 Aligned_cols=160 Identities=18% Similarity=0.310 Sum_probs=118.9
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD----------- 275 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~----------- 275 (489)
..+|.+|++|+|++.+++.|...+. . ...+..|||+||||||||++|+++|+.++..
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~----~--------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALT----Q--------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----h--------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 4578999999999999887765443 1 1335678999999999999999999998653
Q ss_pred -------------EEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 276 -------------VYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 276 -------------~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
++.++.++-.+.+.++.+.... .+..|+||||+|.+-
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------------------ 132 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------------------ 132 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------------------
Confidence 2334443323345566666433 235799999999883
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
...++.||..|+.- .+.+++|++|+.+.+|.+.++. |+ .+++|..++.++....++..+..++...
T Consensus 133 ---~eAqNALLKtLEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~ 198 (944)
T PRK14949 133 ---RSSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPF 198 (944)
T ss_pred ---HHHHHHHHHHHhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 34667889998873 3457778888889999999987 76 6799999999999888888776544433
No 74
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.6e-14 Score=157.01 Aligned_cols=161 Identities=18% Similarity=0.293 Sum_probs=124.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC-------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN------------- 273 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~------------- 273 (489)
...|.+|++|+|++.+++.+.+.+.. ...+..||||||||||||++|+++|+.++
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 35799999999999988877766542 23457899999999999999999999874
Q ss_pred -----------CcEEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 274 -----------FDVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 274 -----------~~~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
.+++.++.++-.+.+.++.+..... ..-|++|||+|.+.
T Consensus 77 ~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------------------ 132 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------------------ 132 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------------------
Confidence 4677777765556677777776542 35799999999873
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCCh
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 413 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 413 (489)
...++.||..++.. +..+++|++|+.++.+.+.+++ |+. .++|+.++.++....+...+...+..+.
T Consensus 133 ---~~a~naLLKtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~ 199 (559)
T PRK05563 133 ---TGAFNALLKTLEEP----PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYE 199 (559)
T ss_pred ---HHHHHHHHHHhcCC----CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 23457788888864 3457888888889999999988 774 5899999999988888877765554443
No 75
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.61 E-value=1.6e-14 Score=148.69 Aligned_cols=162 Identities=19% Similarity=0.336 Sum_probs=120.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC-------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN------------- 273 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~------------- 273 (489)
...|.+|++++|++.+++.+...+.. | ..+..||||||||+|||++++++|..+.
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 45789999999999998888765531 2 2356899999999999999999999874
Q ss_pred -----------CcEEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 274 -----------FDVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 274 -----------~~~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
.+++.++.....+...+++++.... .+.|++|||+|.+.
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------------------ 130 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------------------ 130 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------------------
Confidence 2355555543334455666765542 34699999999773
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChH
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL 414 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~ 414 (489)
....+.||..++.. +...++|++||.++.+.+++.+ |+ ..++|++|+.++...++..++...+..+.+
T Consensus 131 ---~~~~~~Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~ 198 (355)
T TIGR02397 131 ---KSAFNALLKTLEEP----PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIED 198 (355)
T ss_pred ---HHHHHHHHHHHhCC----ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 12346678888763 3457888888999999999988 77 468999999999999998877665555443
No 76
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=9.4e-15 Score=158.98 Aligned_cols=161 Identities=17% Similarity=0.300 Sum_probs=123.0
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
..+|.+|++|+|++.+++.|...+.. ...+.+|||+||||||||++|+++|+.++.
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 46799999999999999888766541 234578999999999999999999998753
Q ss_pred ------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 275 ------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 275 ------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+++.++.++-.+.+.++.++... .+..|+||||+|.+.
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------------------ 132 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------------------ 132 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------------------
Confidence 34555555444566788777543 245799999999762
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCCh
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 413 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 413 (489)
...++.||..|+.. .+.+.+|++||.+.++.+.++. |+ ..+.|..++.++....++..+...+..+.
T Consensus 133 ---~~A~NALLKtLEEP----p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id 199 (709)
T PRK08691 133 ---KSAFNAMLKTLEEP----PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYE 199 (709)
T ss_pred ---HHHHHHHHHHHHhC----CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcC
Confidence 23456788888863 2457888899999999999886 87 66899999999988888887776655443
No 77
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.5e-14 Score=153.38 Aligned_cols=160 Identities=19% Similarity=0.350 Sum_probs=119.9
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
...|.+|++|+|++.+++.+...+.. ...+..+|||||||||||++|+++|+.+..
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 46799999999999998877665542 223456899999999999999999998853
Q ss_pred -----------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCC
Q 011286 275 -----------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (489)
Q Consensus 275 -----------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (489)
+++.++.+...+.+.++.+.... ..+.||||||+|.+.
T Consensus 75 sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------------------- 129 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------------------- 129 (504)
T ss_pred hhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-------------------------
Confidence 36666665444455666654332 246799999999662
Q ss_pred chhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 338 RFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 338 ~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
...++.||..|+.. ....++|++||.+..+.+++.+ |+. +++|..++.++....++..+...+...
T Consensus 130 --~~a~naLLk~LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i 195 (504)
T PRK14963 130 --KSAFNALLKTLEEP----PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREA 195 (504)
T ss_pred --HHHHHHHHHHHHhC----CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 23467788888763 3457888889999999999988 764 699999999999888888776555443
No 78
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2e-14 Score=156.58 Aligned_cols=161 Identities=16% Similarity=0.297 Sum_probs=121.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
..+|.+|++++|++.+.+.|...+. . ...+..||||||+|||||++++++|+.++.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~----~--------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALT----Q--------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 4679999999999888877766443 1 223567999999999999999999999864
Q ss_pred -----------------cEEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccc
Q 011286 275 -----------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS 331 (489)
Q Consensus 275 -----------------~~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~ 331 (489)
+++.++.++-.+.+.+++++.... +.-|++|||+|.+.
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------------- 137 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------------- 137 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-------------------
Confidence 455666554445567787776532 24699999999883
Q ss_pred cccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC
Q 011286 332 ACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP 411 (489)
Q Consensus 332 ~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~ 411 (489)
...++.||..|+.. .+.+++|++|+.+.++.+.++. |+ .+++|..++.++....++..+...+..
T Consensus 138 --------~~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 138 --------NTAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred --------HHHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 23467788888863 3557788888889999989887 76 679999999999888888777655554
Q ss_pred Ch
Q 011286 412 LF 413 (489)
Q Consensus 412 l~ 413 (489)
..
T Consensus 203 ie 204 (618)
T PRK14951 203 AE 204 (618)
T ss_pred CC
Confidence 43
No 79
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.2e-14 Score=154.64 Aligned_cols=158 Identities=16% Similarity=0.323 Sum_probs=119.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC-------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN------------- 273 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~------------- 273 (489)
..+|.+|++++|++.+++.+...+. ....+.+|||+||||+|||++|+++|+.+.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~------------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAIL------------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 5689999999999999887766543 123347899999999999999999999874
Q ss_pred -----------CcEEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 274 -----------FDVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 274 -----------~~~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
.+++.++.++..+.+.++.+..... ...|++|||+|.+-.
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~----------------------- 133 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST----------------------- 133 (605)
T ss_pred HHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------------------
Confidence 2556666554445566776664332 356999999998731
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEH 410 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~ 410 (489)
...+.||..|+.. ++..++|++|+.+..|.+++++ |+. +++|+.++.++....+...+...+.
T Consensus 134 ----~A~NaLLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi 196 (605)
T PRK05896 134 ----SAWNALLKTLEEP----PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKI 196 (605)
T ss_pred ----HHHHHHHHHHHhC----CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCC
Confidence 2346788888863 3457888888899999999998 764 6999999999988877776654443
No 80
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.7e-14 Score=160.31 Aligned_cols=160 Identities=21% Similarity=0.329 Sum_probs=121.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
.+.|.+|++|+|++.+++.|...+.. | .....||||||+|||||++|+++|+.++.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 57899999999999988887665541 1 23457999999999999999999999952
Q ss_pred --------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhccccccccccc
Q 011286 275 --------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334 (489)
Q Consensus 275 --------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (489)
+++.++..+..+.+.++.+.... .+..|+||||+|.+-
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt---------------------- 133 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT---------------------- 133 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC----------------------
Confidence 45556554444456666654332 245799999999883
Q ss_pred CCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 335 QGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 335 ~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
....+.||+.|+.. .+.++||++|+.+++|-+.|.. |+ .+++|..++.++...++...+..++..+
T Consensus 134 -----~~a~NaLLK~LEEp----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~i 199 (824)
T PRK07764 134 -----PQGFNALLKIVEEP----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPV 199 (824)
T ss_pred -----HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 23457789999875 3567888888999999999887 65 6799999999999888888776554433
No 81
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.8e-14 Score=154.72 Aligned_cols=163 Identities=23% Similarity=0.342 Sum_probs=123.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC-------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN------------- 273 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~------------- 273 (489)
...|.+|++++|++.+++.|...+. . | ..+..||||||+|||||++|+++|+.++
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~----~-------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALD----A-------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH----c-------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 4679999999999988888766554 1 1 2345799999999999999999999875
Q ss_pred -------------CcEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhccccccccccc
Q 011286 274 -------------FDVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334 (489)
Q Consensus 274 -------------~~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (489)
.+++.++.++..+.+.++++.... ...-|++|||+|.+-
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt---------------------- 131 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT---------------------- 131 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC----------------------
Confidence 245566665544566666655332 235799999999883
Q ss_pred CCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChH
Q 011286 335 QGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL 414 (489)
Q Consensus 335 ~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~ 414 (489)
....+.||..|+.. .+.+++|++|+.+++|.+++.. |. .+++|..++.++....+..++...+..+.+
T Consensus 132 -----~~A~NALLK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~ 199 (584)
T PRK14952 132 -----TAGFNALLKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDD 199 (584)
T ss_pred -----HHHHHHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 23567788888874 3568888888999999999987 74 679999999999888888877765554443
Q ss_pred h
Q 011286 415 E 415 (489)
Q Consensus 415 ~ 415 (489)
+
T Consensus 200 ~ 200 (584)
T PRK14952 200 A 200 (584)
T ss_pred H
Confidence 3
No 82
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=3.1e-14 Score=156.24 Aligned_cols=158 Identities=19% Similarity=0.336 Sum_probs=118.6
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
..+|.+|++|+|++.+++.+...+.. ...+.+||||||||||||++|+++|..+..
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 56899999999999998887776641 234578999999999999999999998743
Q ss_pred ---------cEEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCch
Q 011286 275 ---------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRF 339 (489)
Q Consensus 275 ---------~~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (489)
+++.++..+-.+.+.++.+..... ...|++|||+|.+..
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-------------------------- 132 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-------------------------- 132 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH--------------------------
Confidence 233444433233455676665442 357999999998732
Q ss_pred hhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCC
Q 011286 340 QVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEH 410 (489)
Q Consensus 340 ~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~ 410 (489)
..++.||..|+.. ++.+++|++|+.++.|.+++++ |+. +++|..++.++....+...+...+.
T Consensus 133 -~A~NALLKtLEEP----P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI 195 (725)
T PRK07133 133 -SAFNALLKTLEEP----PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENI 195 (725)
T ss_pred -HHHHHHHHHhhcC----CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3467788888874 3567888888999999999998 774 7999999999988777766554443
No 83
>PRK06893 DNA replication initiation factor; Validated
Probab=99.59 E-value=2.7e-14 Score=138.65 Aligned_cols=174 Identities=16% Similarity=0.212 Sum_probs=109.0
Q ss_pred ccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 206 NLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 206 ~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
....+.+||++++.+.. .....+.. .........++||||||||||+|++|+|+++ +..+..+++.
T Consensus 8 ~~~~~~~fd~f~~~~~~--~~~~~~~~---------~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 8 HQIDDETLDNFYADNNL--LLLDSLRK---------NFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCCCcccccccccCChH--HHHHHHHH---------HhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 34567799999976532 12222211 1111223457999999999999999999986 4455555554
Q ss_pred ccCChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceE
Q 011286 283 SVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERI 362 (489)
Q Consensus 283 ~~~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~i 362 (489)
... ....+++....+..+|+||||+.+.+ .......+..++|.+.. . +..+
T Consensus 77 ~~~--~~~~~~~~~~~~~dlLilDDi~~~~~----------------------~~~~~~~l~~l~n~~~~---~--~~~i 127 (229)
T PRK06893 77 KSQ--YFSPAVLENLEQQDLVCLDDLQAVIG----------------------NEEWELAIFDLFNRIKE---Q--GKTL 127 (229)
T ss_pred Hhh--hhhHHHHhhcccCCEEEEeChhhhcC----------------------ChHHHHHHHHHHHHHHH---c--CCcE
Confidence 321 12224455556778999999998753 11123344455554432 1 2244
Q ss_pred EEEec-CCCCCCC---ccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHH
Q 011286 363 IIFTT-NHKDRLD---PALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEEL 419 (489)
Q Consensus 363 iI~TT-N~~~~LD---pALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l 419 (489)
+|+|+ ..|..++ |.|.++.+.+..++++.|+.+.+..+++......+..+.+++...
T Consensus 128 llits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~ 188 (229)
T PRK06893 128 LLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANF 188 (229)
T ss_pred EEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 45544 4566554 889885555688999999999999999987765555555554443
No 84
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.1e-14 Score=152.23 Aligned_cols=160 Identities=18% Similarity=0.302 Sum_probs=118.0
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
...|.+|++++|++.+++.+...+.. ...+..|||+||||||||++|+++|+.++.
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 45789999999999998877655531 123457999999999999999999998853
Q ss_pred ------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 275 ------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 275 ------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+++.++...-.+.+.++.++... ....|++|||+|.+.
T Consensus 77 ~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------------------ 132 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------------------ 132 (546)
T ss_pred HHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------------------
Confidence 55666654433445566665433 245799999999873
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
....+.||..|+.. ++.+++|++|+.+..+.++++. |+ ..++|..++.++....+...+...+...
T Consensus 133 ---~~a~naLLK~LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~ 198 (546)
T PRK14957 133 ---KQSFNALLKTLEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINS 198 (546)
T ss_pred ---HHHHHHHHHHHhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 23456788888873 3457777777788888888887 76 6799999999998877777665544433
No 85
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=6.5e-14 Score=145.30 Aligned_cols=160 Identities=18% Similarity=0.322 Sum_probs=117.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
..+|.+|++++|++..++.+...+.. ...+.+||||||||+|||++++++|+.+..
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 56799999999999988877665541 234578999999999999999999998743
Q ss_pred cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHH
Q 011286 275 DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLN 348 (489)
Q Consensus 275 ~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 348 (489)
+++.++.....+.+.++.++... ..+.||+|||+|.+.. ..++.|+.
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------------------~~~~~ll~ 130 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------------------AAFNAFLK 130 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------------------HHHHHHHH
Confidence 34444443334456777777643 2357999999997632 23566777
Q ss_pred hhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 349 FIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 349 ~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
.++.. +...++|++|+.+..+.+++.+ |+ ..++++.++.++....+...+...+..+
T Consensus 131 ~le~~----~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i 187 (367)
T PRK14970 131 TLEEP----PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKF 187 (367)
T ss_pred HHhCC----CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCC
Confidence 77763 2346777888888999999987 65 3589999999998888877665555444
No 86
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=1.2e-13 Score=146.64 Aligned_cols=158 Identities=19% Similarity=0.257 Sum_probs=115.8
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
...|.+|++++|++.+++.+...+. . ...+..||||||||+|||++|+++|+.+..
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~----~--------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALR----F--------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 3579999999999988887766553 1 234678999999999999999999998743
Q ss_pred -------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccC
Q 011286 275 -------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335 (489)
Q Consensus 275 -------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (489)
+++.++.....+.+.++.+.... ....|++|||+|.+..
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------------- 135 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------------- 135 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH----------------------
Confidence 35555543333345555544322 3578999999998732
Q ss_pred CCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCC
Q 011286 336 GNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEH 410 (489)
Q Consensus 336 ~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~ 410 (489)
...+.||..|+.. .+.+++|++||.+..|.+++.+ |+. .++|+.++.++....+...+...+.
T Consensus 136 -----~~~n~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~ 198 (451)
T PRK06305 136 -----EAFNSLLKTLEEP----PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGI 198 (451)
T ss_pred -----HHHHHHHHHhhcC----CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 2346788888873 2457788888999999999988 774 6999999999988777776554433
No 87
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.5e-14 Score=154.46 Aligned_cols=160 Identities=17% Similarity=0.322 Sum_probs=120.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
..+|.+|++++|++.+++.+...+.. ...+..|||+||||||||++|+++|+.++.
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 35789999999999998877665541 233567999999999999999999999854
Q ss_pred ------------cEEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 275 ------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 275 ------------~~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+++.++.+.-.+.+.+++++.... +..|++|||+|.+.
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------------------ 132 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------------------ 132 (527)
T ss_pred HHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------------------
Confidence 455566554345567777775442 35699999999873
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
....+.||..|+.. ++.+++|++|+.++.+.+.++. |+ .+++|..++.++....+...+..++...
T Consensus 133 ---~~a~naLLK~LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~ 198 (527)
T PRK14969 133 ---KSAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPF 198 (527)
T ss_pred ---HHHHHHHHHHHhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 23457788888873 3557888888889899888887 76 6799999999998887777775544433
No 88
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.5e-14 Score=152.91 Aligned_cols=163 Identities=17% Similarity=0.282 Sum_probs=119.2
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
...|.+|++|+|++.+++.|...+. . | .....|||+||||||||++|+++|+.+..
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~----~-------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQ----E-------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHH----c-------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 5689999999999988777765543 1 1 22458999999999999999999999964
Q ss_pred ------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 275 ------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 275 ------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+++.++...-.+.+.++.+.... ....||||||+|.+.
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------------------ 132 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------------------ 132 (624)
T ss_pred HHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------------------
Confidence 25566554333344555543222 245799999999883
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHh
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE 415 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~ 415 (489)
....+.||..|+.. ...+++|++||.+..+.+.+++ |+ .+|+|+.++.++....+...+...+..+.++
T Consensus 133 ---~~a~naLLk~LEEP----~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~e 201 (624)
T PRK14959 133 ---REAFNALLKTLEEP----PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPA 201 (624)
T ss_pred ---HHHHHHHHHHhhcc----CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 23357788888863 2458889999999999998887 76 4689999999999888887766555444433
No 89
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.58 E-value=9e-15 Score=163.05 Aligned_cols=198 Identities=19% Similarity=0.212 Sum_probs=127.6
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEEeec
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLEL 281 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~~l~~ 281 (489)
.++.++|.++.-+.+++.+.. ..+.++||+||||||||++|+++|..+ +..++.+++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 577788887777777665542 235688999999999999999999875 566777766
Q ss_pred CccC--------ChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhc
Q 011286 282 SSVE--------GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFID 351 (489)
Q Consensus 282 s~~~--------~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 351 (489)
+.+. .+..++.++... ..++||||||||.+++..... .....+..+| .
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~-------------------~g~~d~~nlL---k 308 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS-------------------GGQVDAANLI---K 308 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCC-------------------CcHHHHHHHH---H
Confidence 5542 234566776544 357899999999997632110 0111112222 2
Q ss_pred ccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC----CCCChHh-HHHHHh
Q 011286 352 GLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT----EHPLFLE-VEELIE 421 (489)
Q Consensus 352 gl~s~~g~~~iiI~TTN~~~-----~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~----~~~l~~~-i~~l~~ 421 (489)
.+.. .+++.+|++||.++ .+||||.| ||+ .|+++.|+.+++..|++.+.... +..+.++ +...+.
T Consensus 309 p~L~--~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ 383 (758)
T PRK11034 309 PLLS--SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVE 383 (758)
T ss_pred HHHh--CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHH
Confidence 2211 25688999999765 57999999 997 69999999999999988654321 2222222 222211
Q ss_pred ccCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 011286 422 KVEVTPADVAEQLMRDEVPKIALSGLIQFLQIKKR 456 (489)
Q Consensus 422 ~~~~spa~i~~~l~~~~~~~~al~~l~~~l~~~~~ 456 (489)
+|. .++....-|+.|++-+.++....+.
T Consensus 384 ---ls~----ryi~~r~lPdKaidlldea~a~~~~ 411 (758)
T PRK11034 384 ---LAV----KYINDRHLPDKAIDVIDEAGARARL 411 (758)
T ss_pred ---Hhh----ccccCccChHHHHHHHHHHHHhhcc
Confidence 111 1112234688888888888765543
No 90
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.58 E-value=2.6e-13 Score=140.41 Aligned_cols=210 Identities=16% Similarity=0.126 Sum_probs=130.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC---------CcEEEeecCcc
Q 011286 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---------FDVYDLELSSV 284 (489)
Q Consensus 214 d~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---------~~~~~l~~s~~ 284 (489)
+.+++.++..+.|...+...+.. ..+.+++++||||||||++++++++.+. ..++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 46888888888887777654431 2245799999999999999999998763 56777887654
Q ss_pred CChHH--------------------------HHHHHHH---ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccC
Q 011286 285 EGNKD--------------------------LRQILIA---TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335 (489)
Q Consensus 285 ~~~~~--------------------------L~~l~~~---~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (489)
.+... +..++.. ...+.||+|||+|.+..
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~---------------------- 143 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG---------------------- 143 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc----------------------
Confidence 32111 1222221 23467999999999852
Q ss_pred CCchhhHHHHHHHhhcccccCCCCceEEEEecCCCC---CCCccccCCCcee-eEEEeCCCCHHHHHHHHHHhhCc--CC
Q 011286 336 GNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKD---RLDPALLRPGRMD-VHIHMSYCTPCGFKMLASNYLGI--TE 409 (489)
Q Consensus 336 ~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~---~LDpALlRpGRfd-~~I~~~~p~~~~~~~l~~~~l~~--~~ 409 (489)
. ....+..|+...+. ....+..+.+|++||.++ .+++.+.+ ||. ..|+|++++.+++..+++..+.. ..
T Consensus 144 ~--~~~~L~~l~~~~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~ 218 (365)
T TIGR02928 144 D--DDDLLYQLSRARSN-GDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYD 218 (365)
T ss_pred C--CcHHHHhHhccccc-cCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccC
Confidence 0 11234444443211 111234688899999875 57888877 664 67999999999999999987752 11
Q ss_pred CCChHhHHHHHhccCCCHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhccccccchHHHH
Q 011286 410 HPLFLEVEELIEKVEVTPADVAEQLM-RDEVPKIALSGLIQFLQIKKRETGESKATEAEET 469 (489)
Q Consensus 410 ~~l~~~i~~l~~~~~~spa~i~~~l~-~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~ 469 (489)
..+.+++..++. ...- ..+++..|++.+..+...............+.+.
T Consensus 219 ~~~~~~~l~~i~----------~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~ 269 (365)
T TIGR02928 219 GVLDDGVIPLCA----------ALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEK 269 (365)
T ss_pred CCCChhHHHHHH----------HHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 122233222221 1111 2478888888777776655444433333333333
No 91
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=2e-13 Score=142.23 Aligned_cols=155 Identities=17% Similarity=0.240 Sum_probs=113.1
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc----------------
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD---------------- 275 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~---------------- 275 (489)
.|++|+|++.+++.+...+..... .+...+...+.+|||+||||+|||++|+++|+.+..+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 589999999999998887764332 2334455567899999999999999999999987442
Q ss_pred -------EEEeecCcc-CChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhh
Q 011286 276 -------VYDLELSSV-EGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQV 341 (489)
Q Consensus 276 -------~~~l~~s~~-~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (489)
++.+..... .+.+.++.++.... ...|++|||+|.+.. .
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~---------------------------~ 132 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE---------------------------R 132 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH---------------------------H
Confidence 333333211 23466777775542 346999999998832 2
Q ss_pred HHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011286 342 TLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASN 403 (489)
Q Consensus 342 ~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~ 403 (489)
..+.||..|+.- ....++|++|+.++.|.|++++ |+ ..+.|+.|+.++....+..
T Consensus 133 aanaLLk~LEep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 133 AANALLKAVEEP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred HHHHHHHHhhcC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 236688888763 3446677777779999999998 76 6799999999998777653
No 92
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=4.8e-14 Score=153.95 Aligned_cols=160 Identities=17% Similarity=0.268 Sum_probs=121.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
...|.+|++|+|++.+++.+...+.. ...+..||||||||||||++|+++|+.++.
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 45799999999999998888765541 234568999999999999999999999853
Q ss_pred ------------cEEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 275 ------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 275 ------------~~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+++.++..+..+.++++.+..... ..-|++|||+|.+.
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------------------ 132 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------------------ 132 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------------------
Confidence 355566554445566777665432 34699999999873
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
....+.||..|+.. .+.+++|++||.+++|.+.++. |+ .+++|..++.++....+...+...+..+
T Consensus 133 ---~~a~naLLk~LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i 198 (576)
T PRK14965 133 ---TNAFNALLKTLEEP----PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISI 198 (576)
T ss_pred ---HHHHHHHHHHHHcC----CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 23457888888873 3568888999999999999987 76 5699999999988877777665554433
No 93
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.56 E-value=5.1e-14 Score=152.45 Aligned_cols=187 Identities=19% Similarity=0.266 Sum_probs=122.4
Q ss_pred CceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc--------
Q 011286 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-------- 272 (489)
Q Consensus 201 ~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-------- 272 (489)
.|.. ..+|.+|++++|.....+.+...+. .+.+..+||+||||||||++|++++++.
T Consensus 54 ~~~~--~~rp~~f~~iiGqs~~i~~l~~al~-------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~ 118 (531)
T TIGR02902 54 PLSE--KTRPKSFDEIIGQEEGIKALKAALC-------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPF 118 (531)
T ss_pred hHHH--hhCcCCHHHeeCcHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCc
Confidence 4655 4678999999999888777754321 2235689999999999999999998753
Q ss_pred --CCcEEEeecCccC-ChHHHH-HHH--------------------------HHccCCeEEEEccchhhhhhhhhHHhhh
Q 011286 273 --NFDVYDLELSSVE-GNKDLR-QIL--------------------------IATENKSILVVEDIDCCLEMQDRLAKAK 322 (489)
Q Consensus 273 --~~~~~~l~~s~~~-~~~~L~-~l~--------------------------~~~~~~sIL~iDdiD~~~~~~~~~~~~~ 322 (489)
+.+++.+|++... ++..+. .++ .......+|||||||.+-.
T Consensus 119 ~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~--------- 189 (531)
T TIGR02902 119 KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP--------- 189 (531)
T ss_pred CCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH---------
Confidence 3578889986421 111110 000 0112358999999998843
Q ss_pred hcccccccccccCCCchhhHHHHHHHhhccc--------cc-----------------CCCCceEEEEecCCCCCCCccc
Q 011286 323 AAIPDLYRSACNQGNRFQVTLSGLLNFIDGL--------WS-----------------SCGDERIIIFTTNHKDRLDPAL 377 (489)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl--------~s-----------------~~g~~~iiI~TTN~~~~LDpAL 377 (489)
...+.||..|+.- .+ .+-+-++|++|||.++.|+|++
T Consensus 190 ------------------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paL 251 (531)
T TIGR02902 190 ------------------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPAL 251 (531)
T ss_pred ------------------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHH
Confidence 1122333333210 00 0113467788889999999999
Q ss_pred cCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhccCCCHHHHHH
Q 011286 378 LRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEVTPADVAE 432 (489)
Q Consensus 378 lRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~ 432 (489)
.+ |+ ..|.|+.++.+++..|+++.+...+..+.++.-+++.....+.+++.+
T Consensus 252 rs--R~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~n~Rel~n 303 (531)
T TIGR02902 252 RS--RC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYASNGREAVN 303 (531)
T ss_pred hh--hh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhhhHHHHHH
Confidence 98 87 468999999999999999988766655555544444433334444433
No 94
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.56 E-value=2.6e-13 Score=148.77 Aligned_cols=225 Identities=18% Similarity=0.186 Sum_probs=140.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEEeecCc
Q 011286 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLELSS 283 (489)
Q Consensus 214 d~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~~l~~s~ 283 (489)
+.|.+-++..++|...|...+. |-.+...++++||||||||++++.++.++ .+.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 4566767777777666655443 22233445799999999999999998877 25678888865
Q ss_pred cCCh-----------------------HHHHHHHHHcc----CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 284 VEGN-----------------------KDLRQILIATE----NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 284 ~~~~-----------------------~~L~~l~~~~~----~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+.+. ..+..+|.... ...||+|||||.+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k----------------------- 883 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT----------------------- 883 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc-----------------------
Confidence 4221 23334444331 246999999999853
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCC---CCCCCccccCCCceee-EEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNH---KDRLDPALLRPGRMDV-HIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~---~~~LDpALlRpGRfd~-~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
..+..|-.|++.... .+..++||+++|. ++.|+|.+.. |+.. .|.|++++.+++..|++..+......+
T Consensus 884 -K~QDVLYnLFR~~~~----s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVL 956 (1164)
T PTZ00112 884 -KTQKVLFTLFDWPTK----INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEII 956 (1164)
T ss_pred -cHHHHHHHHHHHhhc----cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCC
Confidence 123344445443221 2346889999985 6678888887 5543 488999999999999998776433334
Q ss_pred hHhHHHHHhccCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHhhHhhHHHHhhhcccccc
Q 011286 413 FLEVEELIEKVEVTPADVAEQLMRDEVPKIALSGLIQFLQIKKRETGESKATEAEETARGAENIQELSEKTDEVET 488 (489)
Q Consensus 413 ~~~i~~l~~~~~~spa~i~~~l~~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~e~~~k~~~~~~ 488 (489)
.+++-+++.+ .....++|++.||+.|..+.+... .......++.++....+...+.+.+..++.
T Consensus 957 dDdAIELIAr---------kVAq~SGDARKALDILRrAgEike---gskVT~eHVrkAleeiE~srI~e~IktLPl 1020 (1164)
T PTZ00112 957 DHTAIQLCAR---------KVANVSGDIRKALQICRKAFENKR---GQKIVPRDITEATNQLFDSPLTNAINYLPW 1020 (1164)
T ss_pred CHHHHHHHHH---------hhhhcCCHHHHHHHHHHHHHhhcC---CCccCHHHHHHHHHHHHhhhHHHHHHcCCH
Confidence 4444444431 111236899999999999987532 222333344444433333335555555543
No 95
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.56 E-value=3.4e-13 Score=127.88 Aligned_cols=179 Identities=19% Similarity=0.242 Sum_probs=145.6
Q ss_pred CCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcE
Q 011286 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDV 276 (489)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~ 276 (489)
+...+++..+|..+.+|+|.+.+|+.+++....|+.. . +-.++||+|..|||||||++|+-+++ +..+
T Consensus 46 ~~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G--------~-pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrL 116 (287)
T COG2607 46 GYLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEG--------L-PANNVLLWGARGTGKSSLVKALLNEYADEGLRL 116 (287)
T ss_pred CcccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcC--------C-cccceEEecCCCCChHHHHHHHHHHHHhcCCeE
Confidence 4566777778889999999999999999999988864 2 24689999999999999999999887 6778
Q ss_pred EEeecCccCChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccC
Q 011286 277 YDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSS 356 (489)
Q Consensus 277 ~~l~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~ 356 (489)
+.|+-.++.+-..|...+...+.+-|||+||+-- .........|-..|||-...
T Consensus 117 VEV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSF--------------------------e~gd~~yK~LKs~LeG~ve~ 170 (287)
T COG2607 117 VEVDKEDLATLPDLVELLRARPEKFILFCDDLSF--------------------------EEGDDAYKALKSALEGGVEG 170 (287)
T ss_pred EEEcHHHHhhHHHHHHHHhcCCceEEEEecCCCC--------------------------CCCchHHHHHHHHhcCCccc
Confidence 8888888887888888888889999999999862 22234456677788988777
Q ss_pred CCCceEEEEecCCCCCCCccc--------------------cCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCCh
Q 011286 357 CGDERIIIFTTNHKDRLDPAL--------------------LRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 413 (489)
Q Consensus 357 ~g~~~iiI~TTN~~~~LDpAL--------------------lRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 413 (489)
.+.+|+|.+|+|+...|+.-. .-..||...+.|++|+.++...++..|....+....
T Consensus 171 rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~ 247 (287)
T COG2607 171 RPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDIS 247 (287)
T ss_pred CCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCC
Confidence 788999999999875554221 113499999999999999999999999976655553
No 96
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=3.6e-14 Score=151.01 Aligned_cols=196 Identities=18% Similarity=0.220 Sum_probs=137.7
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC----cEEEeecCccCC--h
Q 011286 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF----DVYDLELSSVEG--N 287 (489)
Q Consensus 214 d~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~----~~~~l~~s~~~~--~ 287 (489)
.+++..+..|++..++...+ ......+||+||+|||||.|++++++++.. ++..++|+.+.. -
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 56777777887776643332 333568999999999999999999999854 455778888743 3
Q ss_pred HHHHHH----HHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCce
Q 011286 288 KDLRQI----LIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDER 361 (489)
Q Consensus 288 ~~L~~l----~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ 361 (489)
+.+++. |... ..|+||++||+|+++...+.... +.......+..+||.+-......+..+
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~--------------q~~~~~~rla~flnqvi~~y~~~~~~i 542 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENG--------------QDGVVSERLAAFLNQVIKIYLKRNRKI 542 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCC--------------cchHHHHHHHHHHHHHHHHHHccCcEE
Confidence 444444 4333 46999999999999861111100 122334456666755544444445567
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC-CCChHhHHHHHhcc-CCCHHHHHHHH
Q 011286 362 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE-HPLFLEVEELIEKV-EVTPADVAEQL 434 (489)
Q Consensus 362 iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~-~~l~~~i~~l~~~~-~~spa~i~~~l 434 (489)
.+|+|.+....|+|-|..|++|+.++.+|.|...+|.+|+++.+.... ...++++.-+..++ +|.+-|+.-++
T Consensus 543 a~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 543 AVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred EEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 899999999999999999999999999999999999999999887543 23355555555444 37777765443
No 97
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.2e-13 Score=147.60 Aligned_cols=160 Identities=19% Similarity=0.306 Sum_probs=116.9
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
...|.+|++++|++.+.+.+...+.. ...+..||||||||+|||++|+++|..++.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 46799999999999998877665531 234567999999999999999999998752
Q ss_pred ------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 275 ------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 275 ------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+++.++.++-.+.+.++.+.... ....|++|||+|.+..
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~----------------------- 133 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK----------------------- 133 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------------------
Confidence 34555554434445555554332 2357999999997731
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
..++.||..++.. ....++|++|+.++.+.+++.+ |+. .+.|+.++.++....+...+...+...
T Consensus 134 ----~a~naLLk~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~i 198 (486)
T PRK14953 134 ----EAFNALLKTLEEP----PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEY 198 (486)
T ss_pred ----HHHHHHHHHHhcC----CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 2346678887763 2346777777888889999887 764 699999999999888888776555444
No 98
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.6e-13 Score=147.09 Aligned_cols=160 Identities=19% Similarity=0.285 Sum_probs=121.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC-------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN------------- 273 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~------------- 273 (489)
..+|.+|++++|++.+++.+...+. ....+..||||||||+|||++|+++|+.+.
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~------------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALD------------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 4679999999999999888876553 123466899999999999999999999873
Q ss_pred -----------CcEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 274 -----------FDVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 274 -----------~~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
.+++.++.++-.+-+.++.+.... ...-|++|||+|.+.
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------------------ 130 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------------------ 130 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------------------
Confidence 245666654433457788777543 234699999999873
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
....+.||..|+.. +....+|++|+.+.+|.+++.. |. .+++|.+++.++....+...+...+...
T Consensus 131 ---~~A~NALLK~LEEp----p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i 196 (535)
T PRK08451 131 ---KEAFNALLKTLEEP----PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSY 196 (535)
T ss_pred ---HHHHHHHHHHHhhc----CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 24457788888874 2446778888888999999998 75 6799999999998888877776555444
No 99
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.55 E-value=1.5e-13 Score=140.30 Aligned_cols=163 Identities=13% Similarity=0.234 Sum_probs=108.9
Q ss_pred CceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----Cc
Q 011286 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FD 275 (489)
Q Consensus 201 ~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-----~~ 275 (489)
.|.. ...|.+|++++|.+++++.+...+. . +. ..++|||||||||||++|+++|+++. .+
T Consensus 4 ~w~~--ky~P~~~~~~~g~~~~~~~L~~~~~----~-------~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~ 68 (337)
T PRK12402 4 LWTE--KYRPALLEDILGQDEVVERLSRAVD----S-------PN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENN 68 (337)
T ss_pred chHH--hhCCCcHHHhcCCHHHHHHHHHHHh----C-------CC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccc
Confidence 4654 5789999999999888777655443 1 11 23699999999999999999999984 34
Q ss_pred EEEeecCccCC--------------------------hHHHHHHHHHc-------cCCeEEEEccchhhhhhhhhHHhhh
Q 011286 276 VYDLELSSVEG--------------------------NKDLRQILIAT-------ENKSILVVEDIDCCLEMQDRLAKAK 322 (489)
Q Consensus 276 ~~~l~~s~~~~--------------------------~~~L~~l~~~~-------~~~sIL~iDdiD~~~~~~~~~~~~~ 322 (489)
++.++++++.. ...++.++... ..+.+|+|||+|.+..
T Consensus 69 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------- 139 (337)
T PRK12402 69 FTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------- 139 (337)
T ss_pred eEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH---------
Confidence 56677654310 11222222211 2356999999997732
Q ss_pred hcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011286 323 AAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLAS 402 (489)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~ 402 (489)
.....|+..++... ....+|++|+.+..+.++|.+ |+ ..++|++|+.+++..+++
T Consensus 140 ------------------~~~~~L~~~le~~~----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~ 194 (337)
T PRK12402 140 ------------------DAQQALRRIMEQYS----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLE 194 (337)
T ss_pred ------------------HHHHHHHHHHHhcc----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHH
Confidence 11223444555432 224466677777788888877 65 569999999999998888
Q ss_pred HhhCcCCCCC
Q 011286 403 NYLGITEHPL 412 (489)
Q Consensus 403 ~~l~~~~~~l 412 (489)
..+...+..+
T Consensus 195 ~~~~~~~~~~ 204 (337)
T PRK12402 195 SIAEAEGVDY 204 (337)
T ss_pred HHHHHcCCCC
Confidence 8776555444
No 100
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=9.2e-14 Score=145.63 Aligned_cols=158 Identities=14% Similarity=0.264 Sum_probs=114.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
...|.+|++++|++.+++.+...+. . | ..+.+||||||||+|||++|+++|+.+..
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~----~-------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLR----M-------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHH----h-------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 4679999999999999887765443 1 2 23567999999999999999999999854
Q ss_pred --------------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhccccc
Q 011286 275 --------------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDL 328 (489)
Q Consensus 275 --------------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~ 328 (489)
+++.++.....+.+.++.+.... ....|+||||+|.+..
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------------- 141 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------------- 141 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------
Confidence 23344443333456677665544 2357999999998732
Q ss_pred ccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC
Q 011286 329 YRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT 408 (489)
Q Consensus 329 ~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 408 (489)
...+.||..++.. ....++|++|+.+..+-+++.+ |.. +++|+.++.++....+...+...
T Consensus 142 ------------~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~ 202 (397)
T PRK14955 142 ------------AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAE 202 (397)
T ss_pred ------------HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHc
Confidence 2345677777753 2446777777788888888887 664 69999999999887777766544
Q ss_pred CC
Q 011286 409 EH 410 (489)
Q Consensus 409 ~~ 410 (489)
+.
T Consensus 203 g~ 204 (397)
T PRK14955 203 GI 204 (397)
T ss_pred CC
Confidence 43
No 101
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2e-13 Score=148.80 Aligned_cols=161 Identities=19% Similarity=0.309 Sum_probs=120.9
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD----------- 275 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~----------- 275 (489)
.+.|.+|++|+|++.+++.+...+. .| ..+.++|||||+|+|||++|+++|+.++..
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~-----------~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFE-----------TG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHH-----------cC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 5689999999999999888766553 12 235689999999999999999999988542
Q ss_pred ------------------EEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccc
Q 011286 276 ------------------VYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRS 331 (489)
Q Consensus 276 ------------------~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~ 331 (489)
++.++..+..+.++++.++.... ...|++|||+|.+.
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------------- 145 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------------- 145 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-------------------
Confidence 33444343344567777765442 35799999999873
Q ss_pred cccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC
Q 011286 332 ACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP 411 (489)
Q Consensus 332 ~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~ 411 (489)
....+.||..|+.. .+.+++|++|+.++++.+.+.. |+ ..++|..++.++....+...+...+..
T Consensus 146 --------~~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 146 --------TAAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred --------HHHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 23457788888874 3457888888888889989887 76 569999999999888888877655544
Q ss_pred Ch
Q 011286 412 LF 413 (489)
Q Consensus 412 l~ 413 (489)
..
T Consensus 211 i~ 212 (598)
T PRK09111 211 VE 212 (598)
T ss_pred CC
Confidence 43
No 102
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.9e-13 Score=148.34 Aligned_cols=160 Identities=19% Similarity=0.282 Sum_probs=118.6
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
..+|.+|++++|++.+++.+...+.. ...+..||||||||+|||++|+++|+.++.
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 35799999999999999887765541 224567999999999999999999999853
Q ss_pred ------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 275 ------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 275 ------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+++.++...-.+-+.++.+.... ...-|++|||+|.+.
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------------------ 132 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------------------ 132 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------------------
Confidence 34555544323345666665332 245799999999873
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
...++.||..++.. +...++|++|+.+.+|.+++.. |+. .++|..++.++....++..+...+..+
T Consensus 133 ---~~a~naLLK~LEep----p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~i 198 (563)
T PRK06647 133 ---NSAFNALLKTIEEP----PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKY 198 (563)
T ss_pred ---HHHHHHHHHhhccC----CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 23457788888863 3567888888889999999988 764 589999999998888877665444433
No 103
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.54 E-value=1e-13 Score=155.74 Aligned_cols=161 Identities=24% Similarity=0.205 Sum_probs=117.4
Q ss_pred Cccc-ccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHH
Q 011286 212 TFDT-LAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDL 290 (489)
Q Consensus 212 ~fd~-l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L 290 (489)
.+|. ..|.+++|++|++.+..... .+......++|+||||||||++++++|+.++.+++.++++.+.....+
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i 391 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEI 391 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHh
Confidence 3554 78999999999887764332 122334569999999999999999999999999999998876544333
Q ss_pred ---------------HHHHHHcc-CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccc
Q 011286 291 ---------------RQILIATE-NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLW 354 (489)
Q Consensus 291 ---------------~~l~~~~~-~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~ 354 (489)
.+.+.... ...||+|||||.+... ......+.||..+|.-.
T Consensus 392 ~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~-----------------------~~g~~~~aLlevld~~~ 448 (784)
T PRK10787 392 RGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSD-----------------------MRGDPASALLEVLDPEQ 448 (784)
T ss_pred ccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccc-----------------------cCCCHHHHHHHHhcccc
Confidence 22333332 3568999999988531 01123466777776310
Q ss_pred ----c-------CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 355 ----S-------SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 355 ----s-------~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
. ..-.++++|+|+|.. .|+|||+. ||+ .|.++.++.++..+|+++|+.
T Consensus 449 ~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 449 NVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 0 011458999999987 49999999 996 599999999999999999984
No 104
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.54 E-value=7e-14 Score=158.80 Aligned_cols=201 Identities=16% Similarity=0.170 Sum_probs=132.1
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEEe
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDL 279 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~~l 279 (489)
...++.++|.++..+.+++.+. ...+++++|+||||||||++|+++|..+ +.+++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 3468889999888888877654 3346789999999999999999999987 4789999
Q ss_pred ecCccC--------ChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHH-H
Q 011286 280 ELSSVE--------GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLL-N 348 (489)
Q Consensus 280 ~~s~~~--------~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL-~ 348 (489)
+++.+. -+..++.++.... .++||||||||.+++..... + ....+.+| .
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-----------------g---~~~~a~lLkp 301 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-----------------G---AIDAANILKP 301 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-----------------C---cccHHHHhHH
Confidence 987652 1357888887653 47899999999997532110 0 11122222 2
Q ss_pred hhcccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc----CCCCChHhHHHH
Q 011286 349 FIDGLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI----TEHPLFLEVEEL 419 (489)
Q Consensus 349 ~ldgl~s~~g~~~iiI~TTN~~~-----~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~----~~~~l~~~i~~l 419 (489)
.+. .+++.+|++|+..+ ..||+|.| ||.. |.++.|+.++...|++..... ....+.+++-..
T Consensus 302 ~l~------rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~ 372 (821)
T CHL00095 302 ALA------RGELQCIGATTLDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEA 372 (821)
T ss_pred HHh------CCCcEEEEeCCHHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 222 24578888888654 47999999 9975 899999999988877653321 111222222211
Q ss_pred HhccCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhc
Q 011286 420 IEKVEVTPADVAEQLMRDEVPKIALSGLIQFLQIKKRET 458 (489)
Q Consensus 420 ~~~~~~spa~i~~~l~~~~~~~~al~~l~~~l~~~~~~~ 458 (489)
+. .+|. .++-...-|+.|++.+.++....+...
T Consensus 373 i~--~ls~----~yi~~r~lPdkaidlld~a~a~~~~~~ 405 (821)
T CHL00095 373 AA--KLSD----QYIADRFLPDKAIDLLDEAGSRVRLIN 405 (821)
T ss_pred HH--HHhh----ccCccccCchHHHHHHHHHHHHHHhhc
Confidence 11 1110 111122358888888888877766543
No 105
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.53 E-value=1.6e-13 Score=132.28 Aligned_cols=166 Identities=17% Similarity=0.200 Sum_probs=105.8
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~ 283 (489)
...+.+||+.+.. ..+.+++.+..++. ...++.++|+||||||||++++++++++ +.+++.++++.
T Consensus 8 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~---------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 8 LPDDPTFDNFYAG--GNAELLAALRQLAA---------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCCchhhcCcCcC--CcHHHHHHHHHHHh---------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 3445689998832 33445555554432 1235689999999999999999999887 46788888877
Q ss_pred cCChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEE
Q 011286 284 VEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERII 363 (489)
Q Consensus 284 ~~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ii 363 (489)
+.. ....++.......+|+|||+|.+.. .......+..+++.+.. . +. .+
T Consensus 77 ~~~--~~~~~~~~~~~~~lLvIDdi~~l~~----------------------~~~~~~~L~~~l~~~~~---~--~~-~i 126 (226)
T TIGR03420 77 LAQ--ADPEVLEGLEQADLVCLDDVEAIAG----------------------QPEWQEALFHLYNRVRE---A--GG-RL 126 (226)
T ss_pred HHH--hHHHHHhhcccCCEEEEeChhhhcC----------------------ChHHHHHHHHHHHHHHH---c--CC-eE
Confidence 642 2234444455667999999998732 01112333344443322 1 12 34
Q ss_pred EEecC-CCCCCC---ccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCcCCCCChHh
Q 011286 364 IFTTN-HKDRLD---PALLRPGRM--DVHIHMSYCTPCGFKMLASNYLGITEHPLFLE 415 (489)
Q Consensus 364 I~TTN-~~~~LD---pALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~ 415 (489)
|+|+| .+..++ +.|.+ |+ ..+|.+|.|+.+++..+++.+....+..+.++
T Consensus 127 Iits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~ 182 (226)
T TIGR03420 127 LIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDE 182 (226)
T ss_pred EEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 45555 444432 67776 65 57899999999999999987765444444444
No 106
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.53 E-value=8.2e-14 Score=136.35 Aligned_cols=166 Identities=22% Similarity=0.289 Sum_probs=116.2
Q ss_pred CceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------
Q 011286 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------ 274 (489)
Q Consensus 201 ~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------ 274 (489)
.|.. .+.|.+||+++|++.+.+.+...+.. .--..|||||||||||||.|.|+|.+++-
T Consensus 25 swte--KYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~ 89 (346)
T KOG0989|consen 25 SWTE--KYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPC 89 (346)
T ss_pred chHH--HhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCcccccc
Confidence 4654 68899999999999999988877652 11237999999999999999999999865
Q ss_pred cEEEeecCccCChH-------HHHHHHHHc----cC----CeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCch
Q 011286 275 DVYDLELSSVEGNK-------DLRQILIAT----EN----KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRF 339 (489)
Q Consensus 275 ~~~~l~~s~~~~~~-------~L~~l~~~~----~~----~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (489)
.+..++.+.-.+.+ ...++.... +. .-|++|||.|.+.
T Consensus 90 rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------------------- 142 (346)
T KOG0989|consen 90 RVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------------------- 142 (346)
T ss_pred chhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh---------------------------
Confidence 22334444332211 111222111 11 2699999999884
Q ss_pred hhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHh
Q 011286 340 QVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE 415 (489)
Q Consensus 340 ~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~ 415 (489)
..+.+.|...||... ....+|+.||+.++|.+-+.. |.. +..|+....+..-.-++.....++....++
T Consensus 143 sdaq~aLrr~mE~~s----~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~ 211 (346)
T KOG0989|consen 143 SDAQAALRRTMEDFS----RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDD 211 (346)
T ss_pred HHHHHHHHHHHhccc----cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHH
Confidence 345577888888842 447899999999999999988 775 478887777666666666665555555443
No 107
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=3.1e-13 Score=147.58 Aligned_cols=158 Identities=14% Similarity=0.248 Sum_probs=115.6
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
..+|.+|++++|++.+++.+...+. ....+.+|||+||||||||++|+++|+.++.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~------------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLR------------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 3579999999999998887765443 1244568999999999999999999999865
Q ss_pred --------------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhccccc
Q 011286 275 --------------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDL 328 (489)
Q Consensus 275 --------------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~ 328 (489)
+++.++.....+.+.++.+.... ...-|++|||+|.+..
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------------- 141 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------------- 141 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------
Confidence 23334433333456777766554 2457999999998732
Q ss_pred ccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC
Q 011286 329 YRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT 408 (489)
Q Consensus 329 ~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 408 (489)
...+.||..|+.. .+..++|++|+.+.+|-+++.+ |. ..++|..++.++....+...+...
T Consensus 142 ------------~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~e 202 (620)
T PRK14954 142 ------------AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAE 202 (620)
T ss_pred ------------HHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHc
Confidence 2356788888874 2446777777888999999887 65 569999999999887777666544
Q ss_pred CC
Q 011286 409 EH 410 (489)
Q Consensus 409 ~~ 410 (489)
+.
T Consensus 203 gi 204 (620)
T PRK14954 203 GI 204 (620)
T ss_pred CC
Confidence 43
No 108
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.52 E-value=2.9e-13 Score=141.67 Aligned_cols=177 Identities=20% Similarity=0.241 Sum_probs=113.7
Q ss_pred Cccc-ccCCHHHHHHHHHHHHHHHhcHHHHHHh--CC-CCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCC-
Q 011286 212 TFDT-LAMDFDMKKMIMDDLERFLKRKEFYKRV--GK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG- 286 (489)
Q Consensus 212 ~fd~-l~~~~~~K~~i~~~l~~~l~~~~~y~~~--g~-~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~- 286 (489)
.++. |+|+++.|+.+...+...+++-...... +. ..+.++||+||||||||++|+++|..++.+++.++++.+..
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 4554 8999999998876665443332110000 11 24578999999999999999999999999999999987632
Q ss_pred -------hHHHHHHHHH------ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccc
Q 011286 287 -------NKDLRQILIA------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL 353 (489)
Q Consensus 287 -------~~~L~~l~~~------~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl 353 (489)
...+..++.. ...++||||||||.+.......+ .. .+-....+.+.||..|||-
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~--~~-----------~d~s~~~vQ~~LL~~Leg~ 214 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPS--IT-----------RDVSGEGVQQALLKILEGT 214 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCC--cC-----------CCcccHHHHHHHHHHHhcC
Confidence 1223343332 23579999999999964211000 00 0111234678889999874
Q ss_pred cc----CCC-----CceEEEEecCCCC----------------------------------------------------C
Q 011286 354 WS----SCG-----DERIIIFTTNHKD----------------------------------------------------R 372 (489)
Q Consensus 354 ~s----~~g-----~~~iiI~TTN~~~----------------------------------------------------~ 372 (489)
.. ..| .+.++|.|+|-.. .
T Consensus 215 ~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~g 294 (412)
T PRK05342 215 VASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFG 294 (412)
T ss_pred eEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHh
Confidence 21 111 2346777777510 0
Q ss_pred CCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011286 373 LDPALLRPGRMDVHIHMSYCTPCGFKMLASN 403 (489)
Q Consensus 373 LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~ 403 (489)
+.|+|+ ||+|..+.|...+.+.+..|+..
T Consensus 295 f~PEfl--gRld~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 295 LIPEFI--GRLPVVATLEELDEEALVRILTE 323 (412)
T ss_pred hhHHHh--CCCCeeeecCCCCHHHHHHHHHH
Confidence 233343 59999999999999999888864
No 109
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.7e-13 Score=146.69 Aligned_cols=160 Identities=17% Similarity=0.269 Sum_probs=116.6
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
...|.+|++|+|++.+++.+...+.. ...+..||||||||+|||++|+++|+.++.
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 46799999999999999887665541 123457999999999999999999998742
Q ss_pred -------------cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccC
Q 011286 275 -------------DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335 (489)
Q Consensus 275 -------------~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (489)
+++.++.+...+.+.++.+.... ....|+||||+|.+.
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~----------------------- 133 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS----------------------- 133 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----------------------
Confidence 34555554434456666655432 235799999999773
Q ss_pred CCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 336 GNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 336 ~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
...++.||..++.. ....++|++|+..+.+.+.+.+ |+ ..++|..++..+....+...+...+..+
T Consensus 134 ----~~a~naLLk~LEep----p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i 199 (585)
T PRK14950 134 ----TAAFNALLKTLEEP----PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINL 199 (585)
T ss_pred ----HHHHHHHHHHHhcC----CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 23456788888874 2456777888888888888887 66 4689999999998888777765544443
No 110
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=5.7e-13 Score=146.16 Aligned_cols=157 Identities=19% Similarity=0.307 Sum_probs=116.8
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
...|.+|++++|++.+++.+...+.. | ....+||||||||||||++|+++|+.++.
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 56789999999999998887665541 1 12358999999999999999999999854
Q ss_pred --------------cEEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhccccccccccc
Q 011286 275 --------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334 (489)
Q Consensus 275 --------------~~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (489)
+++.++.....+.+.+++++.... ..-|++|||+|.+-
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt---------------------- 134 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS---------------------- 134 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC----------------------
Confidence 345555443344567777775542 34699999999873
Q ss_pred CCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC
Q 011286 335 QGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE 409 (489)
Q Consensus 335 ~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~ 409 (489)
....+.||..|+.- ....++|++|++++.+-|++.. |+ ..++|..++.++....+...+...+
T Consensus 135 -----~~a~naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~keg 197 (620)
T PRK14948 135 -----TAAFNALLKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKES 197 (620)
T ss_pred -----HHHHHHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhC
Confidence 23457889988863 3557888888889999999987 76 5689999998887766665554433
No 111
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.50 E-value=2.7e-12 Score=134.27 Aligned_cols=199 Identities=20% Similarity=0.179 Sum_probs=122.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEeecCccCCh-
Q 011286 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELSSVEGN- 287 (489)
Q Consensus 214 d~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~~~~l~~s~~~~~- 287 (489)
+.+++.++..+.|...+...+. | ..+.++++|||||||||++++.+++.+ +..++.+++....+.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 5567777776766665554332 1 224578999999999999999999987 567888887643211
Q ss_pred ----------------------HHH-HHHH---HHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhh
Q 011286 288 ----------------------KDL-RQIL---IATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQV 341 (489)
Q Consensus 288 ----------------------~~L-~~l~---~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (489)
..+ ..+. .....+.||+|||+|.+.. .....
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~-----------------------~~~~~ 157 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE-----------------------KEGND 157 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc-----------------------cCCch
Confidence 111 1111 1223458999999998851 11123
Q ss_pred HHHHHHHhhcccccCCCCceEEEEecCCC---CCCCccccCCCce-eeEEEeCCCCHHHHHHHHHHhhCcC--CCCChHh
Q 011286 342 TLSGLLNFIDGLWSSCGDERIIIFTTNHK---DRLDPALLRPGRM-DVHIHMSYCTPCGFKMLASNYLGIT--EHPLFLE 415 (489)
Q Consensus 342 ~ls~LL~~ldgl~s~~g~~~iiI~TTN~~---~~LDpALlRpGRf-d~~I~~~~p~~~~~~~l~~~~l~~~--~~~l~~~ 415 (489)
.+..|+..++... +..+.+|+++|.. +.+++.+.+ |+ ...|+|++++.++...+++..+... ...+.++
T Consensus 158 ~l~~l~~~~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~ 232 (394)
T PRK00411 158 VLYSLLRAHEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDE 232 (394)
T ss_pred HHHHHHHhhhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHh
Confidence 4566666655432 2357788888866 457777765 44 3678999999999999998877432 1122233
Q ss_pred HHHHHhccCCCHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhcc
Q 011286 416 VEELIEKVEVTPADVAEQLM-RDEVPKIALSGLIQFLQIKKRETG 459 (489)
Q Consensus 416 i~~l~~~~~~spa~i~~~l~-~~~~~~~al~~l~~~l~~~~~~~~ 459 (489)
..+++. +..- ..+++..|++.+..+.........
T Consensus 233 ~l~~i~----------~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 233 VLDLIA----------DLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred HHHHHH----------HHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 222222 1111 146677777777666555444333
No 112
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5.6e-13 Score=146.16 Aligned_cols=161 Identities=16% Similarity=0.300 Sum_probs=123.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC-------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN------------- 273 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~------------- 273 (489)
...|.+|++|+|++.+++.+...+. ....+..||||||+|+|||++|+++|..+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~------------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIA------------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 4679999999999999988877664 123466899999999999999999999874
Q ss_pred ------------CcEEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccC
Q 011286 274 ------------FDVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335 (489)
Q Consensus 274 ------------~~~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (489)
.+++.++..+..+.+.++.++.... ..-|++|||+|.+.
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls----------------------- 134 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS----------------------- 134 (614)
T ss_pred chHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----------------------
Confidence 4666677665455677887775442 34699999999873
Q ss_pred CCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCCh
Q 011286 336 GNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 413 (489)
Q Consensus 336 ~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 413 (489)
....+.||..|+.. .+..++|++|+.+.+|-++|.+ |+ ..++|..++.++....+...+...+....
T Consensus 135 ----~~a~naLLK~LEep----p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~ 201 (614)
T PRK14971 135 ----QAAFNAFLKTLEEP----PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAE 201 (614)
T ss_pred ----HHHHHHHHHHHhCC----CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 23456788888874 3456788888888999999988 76 45999999999988888777665554443
No 113
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.50 E-value=8.4e-13 Score=133.73 Aligned_cols=164 Identities=17% Similarity=0.204 Sum_probs=112.9
Q ss_pred CCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----C
Q 011286 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----F 274 (489)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-----~ 274 (489)
..|.. ...|.+|++++|.+++++.+...+. . |. ...+|||||||||||++++++++++. .
T Consensus 5 ~~w~~--kyrP~~~~~~~g~~~~~~~l~~~i~----~-------~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~ 69 (319)
T PRK00440 5 EIWVE--KYRPRTLDEIVGQEEIVERLKSYVK----E-------KN--MPHLLFAGPPGTGKTTAALALARELYGEDWRE 69 (319)
T ss_pred Cccch--hhCCCcHHHhcCcHHHHHHHHHHHh----C-------CC--CCeEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 35765 6789999999999988887766543 1 11 23589999999999999999999873 3
Q ss_pred cEEEeecCccCChHHHHHHH----HHc----cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHH
Q 011286 275 DVYDLELSSVEGNKDLRQIL----IAT----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGL 346 (489)
Q Consensus 275 ~~~~l~~s~~~~~~~L~~l~----~~~----~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 346 (489)
+++.++.+.......++..+ ... ..+.+|+|||+|.+.. .....|
T Consensus 70 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------------------------~~~~~L 122 (319)
T PRK00440 70 NFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------------------------DAQQAL 122 (319)
T ss_pred ceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------------------------HHHHHH
Confidence 45555554433333232222 111 1256999999998732 112345
Q ss_pred HHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 347 LNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 347 L~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
+..++... ....+|+++|.+..+.+++.+ |+. .++|+.++.++...+++.++...+..+
T Consensus 123 ~~~le~~~----~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 123 RRTMEMYS----QNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred HHHHhcCC----CCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 55565532 235677788888888888887 765 589999999999888888887655544
No 114
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.50 E-value=4.6e-13 Score=148.81 Aligned_cols=157 Identities=22% Similarity=0.262 Sum_probs=107.5
Q ss_pred CceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 201 ~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
.|.. ..+|.+|++++|++.+.... ..+...+.. ....++|||||||||||++|+++|+.++.+++.++
T Consensus 17 PLae--k~RP~tldd~vGQe~ii~~~-~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 17 PLAD--RLRPRTLEEFVGQDHILGEG-RLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred ChHH--hcCCCcHHHhcCcHHHhhhh-HHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 4554 45699999999998776431 112222211 11247899999999999999999999999998888
Q ss_pred cCccCChHHHHHHHHH-------ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccc
Q 011286 281 LSSVEGNKDLRQILIA-------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL 353 (489)
Q Consensus 281 ~s~~~~~~~L~~l~~~-------~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl 353 (489)
++.. +...++..+.. .....||||||||.+.. .....|+..++.
T Consensus 85 a~~~-~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~---------------------------~qQdaLL~~lE~- 135 (725)
T PRK13341 85 AVLA-GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK---------------------------AQQDALLPWVEN- 135 (725)
T ss_pred hhhh-hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH---------------------------HHHHHHHHHhcC-
Confidence 7642 22334433322 23567999999998732 112345555554
Q ss_pred ccCCCCceEEEEec--CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 354 WSSCGDERIIIFTT--NHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 354 ~s~~g~~~iiI~TT--N~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
..+++|++| |....+++++++ |. ..+.|+.++.+++..+++.++.
T Consensus 136 -----g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 136 -----GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred -----ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 235666655 334578999998 64 4599999999999999998876
No 115
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.49 E-value=4.3e-13 Score=132.90 Aligned_cols=129 Identities=23% Similarity=0.205 Sum_probs=92.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHH---------------------------------HHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLR---------------------------------QIL 294 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~---------------------------------~l~ 294 (489)
++.+||+||||||||++|+++|..+|.+++.+++..-....++. .++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 45799999999999999999999999999999876532222211 112
Q ss_pred HHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccc-cC-----------CCCceE
Q 011286 295 IATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLW-SS-----------CGDERI 362 (489)
Q Consensus 295 ~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~-s~-----------~g~~~i 362 (489)
.....+.+|+|||||.+-+ .+.+.|+..|+.-. .- ......
T Consensus 101 ~A~~~g~~lllDEi~r~~~---------------------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~fr 153 (262)
T TIGR02640 101 LAVREGFTLVYDEFTRSKP---------------------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFR 153 (262)
T ss_pred HHHHcCCEEEEcchhhCCH---------------------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCE
Confidence 2234568999999998632 23455555554311 00 012456
Q ss_pred EEEecCCC-----CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 363 IIFTTNHK-----DRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 363 iI~TTN~~-----~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
||+|+|.. ..++++|++ || ..+.+++|+.+...+|++...+
T Consensus 154 vIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~ 199 (262)
T TIGR02640 154 VIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD 199 (262)
T ss_pred EEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC
Confidence 89999975 356899999 98 6799999999999999988764
No 116
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.49 E-value=5.3e-13 Score=142.17 Aligned_cols=192 Identities=18% Similarity=0.244 Sum_probs=120.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEeec
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLEL 281 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~~~~l~~ 281 (489)
+.+..+||+.+..+.-+. ....+..+...+ |.. .++++||||||||||+|++|+|+++ +..++.+++
T Consensus 115 l~~~~tfd~fv~g~~n~~-a~~~~~~~~~~~------~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRL-AHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCCCcccccccCCCcHH-HHHHHHHHHhCc------Ccc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 455568999664333222 223333332221 222 2569999999999999999999998 556777777
Q ss_pred CccCC-------hHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccc
Q 011286 282 SSVEG-------NKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLW 354 (489)
Q Consensus 282 s~~~~-------~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~ 354 (489)
..+.. ......+.....+..+|+|||||.+.+. ...+.. |+..++.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~----------------------~~~~~~---l~~~~n~l~ 241 (450)
T PRK00149 187 EKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGK----------------------ERTQEE---FFHTFNALH 241 (450)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCC----------------------HHHHHH---HHHHHHHHH
Confidence 65421 0112223334456789999999988431 111223 333333333
Q ss_pred cCCCCceEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHh-ccCCCHH
Q 011286 355 SSCGDERIIIFTTNHKDR---LDPALLRPGRMD--VHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE-KVEVTPA 428 (489)
Q Consensus 355 s~~g~~~iiI~TTN~~~~---LDpALlRpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa 428 (489)
.. +..+||.++..|.. ++++|.. ||. ..+++..|+.+++..+++..+...+..+.+++...+. ...-+..
T Consensus 242 ~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 242 EA--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVR 317 (450)
T ss_pred HC--CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHH
Confidence 22 22344444445544 6788887 885 6899999999999999999888766677666655544 5566777
Q ss_pred HHHHHHh
Q 011286 429 DVAEQLM 435 (489)
Q Consensus 429 ~i~~~l~ 435 (489)
++.+.|.
T Consensus 318 ~l~~~l~ 324 (450)
T PRK00149 318 ELEGALN 324 (450)
T ss_pred HHHHHHH
Confidence 7766654
No 117
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.5e-13 Score=144.77 Aligned_cols=171 Identities=18% Similarity=0.224 Sum_probs=126.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc------CChHHHHHHHHHcc--CCeEEEEccchhhhhhhh
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGNKDLRQILIATE--NKSILVVEDIDCCLEMQD 316 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~------~~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~ 316 (489)
+.....+||+|+||||||++++++|.++|.+++.++|.++ .++..+...|..+. +|+|||+-++|.+...++
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d 507 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD 507 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC
Confidence 3444569999999999999999999999999999999887 35677888887775 599999999998863111
Q ss_pred hHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHH
Q 011286 317 RLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCG 396 (489)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~ 396 (489)
... .-.....+..++. +|... .+...+|+|+||+..+.+++.+.+ -|-..|.+|.|+.+|
T Consensus 508 gge----------------d~rl~~~i~~~ls-~e~~~-~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~q 567 (953)
T KOG0736|consen 508 GGE----------------DARLLKVIRHLLS-NEDFK-FSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQ 567 (953)
T ss_pred Cch----------------hHHHHHHHHHHHh-ccccc-CCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHH
Confidence 100 1122334444444 33322 233569999999999999999998 788899999999999
Q ss_pred HHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 397 FKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 397 ~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
|.++++.|+......-......++... .+|.+++..++-
T Consensus 568 Rl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~ 607 (953)
T KOG0736|consen 568 RLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVA 607 (953)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhc
Confidence 999999999843322222334555544 599999876654
No 118
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.49 E-value=7.1e-13 Score=128.29 Aligned_cols=165 Identities=17% Similarity=0.194 Sum_probs=103.9
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~ 283 (489)
...|.+||++++... +.++..+..+.. +....++++|+||||||||+|++++++++ +.+++.+++..
T Consensus 11 ~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 11 PPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 455678999873322 223333333222 23445789999999999999999999976 66788887765
Q ss_pred cCChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEE
Q 011286 284 VEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERII 363 (489)
Q Consensus 284 ~~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ii 363 (489)
... .+.......+|+|||+|.+.. ..+..+..+++.+.. . ...++
T Consensus 81 ~~~------~~~~~~~~~~liiDdi~~l~~------------------------~~~~~L~~~~~~~~~---~--~~~~v 125 (227)
T PRK08903 81 PLL------AFDFDPEAELYAVDDVERLDD------------------------AQQIALFNLFNRVRA---H--GQGAL 125 (227)
T ss_pred hHH------HHhhcccCCEEEEeChhhcCc------------------------hHHHHHHHHHHHHHH---c--CCcEE
Confidence 421 123344567999999998621 122334444444332 1 22345
Q ss_pred EEecCCCC---CCCccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHH
Q 011286 364 IFTTNHKD---RLDPALLRPGRM--DVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEE 418 (489)
Q Consensus 364 I~TTN~~~---~LDpALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ 418 (489)
|+|++.+. .+.+.|.. |+ ...|++++|+.+....++..+....+..+.++.-.
T Consensus 126 l~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~ 183 (227)
T PRK08903 126 LVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPD 183 (227)
T ss_pred EEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 66665432 34566766 66 57899999999988888877665555555444433
No 119
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.48 E-value=8.7e-13 Score=138.70 Aligned_cols=191 Identities=17% Similarity=0.199 Sum_probs=118.5
Q ss_pred cCCCCCccccc-CCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEee
Q 011286 207 LDHPATFDTLA-MDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLE 280 (489)
Q Consensus 207 ~~~p~~fd~l~-~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~~~~l~ 280 (489)
+.+..+||+.+ |.. -. .....+..+...+ |. ...+++||||||||||+|++|+|+++ +..++.++
T Consensus 103 l~~~~tfd~fi~g~~-n~-~a~~~~~~~~~~~------~~-~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 103 LNPKYTFDNFVVGKS-NR-LAHAAALAVAENP------GK-AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCCcccccccCCc-HH-HHHHHHHHHHhCc------Cc-cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 44556899954 433 22 1223333332221 22 23568999999999999999999988 56778887
Q ss_pred cCccCC-------hHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccc
Q 011286 281 LSSVEG-------NKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL 353 (489)
Q Consensus 281 ~s~~~~-------~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl 353 (489)
+..+.. ...+..+........+|+|||||.+.+. ...+..+..+++. +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~----------------------~~~~~~l~~~~n~---~ 228 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGK----------------------ERTQEEFFHTFNA---L 228 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCC----------------------HHHHHHHHHHHHH---H
Confidence 665411 0111122233345679999999987531 1112233334433 3
Q ss_pred ccCCCCceEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHH-HhccCCCH
Q 011286 354 WSSCGDERIIIFTTNHKDR---LDPALLRPGRMD--VHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEEL-IEKVEVTP 427 (489)
Q Consensus 354 ~s~~g~~~iiI~TTN~~~~---LDpALlRpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l-~~~~~~sp 427 (489)
... +..+||.+++.|.. +++.|.+ ||. ..++++.|+.++|..|++..+...+..+.+++-.. +....-+.
T Consensus 229 ~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~ 304 (405)
T TIGR00362 229 HEN--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNV 304 (405)
T ss_pred HHC--CCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCH
Confidence 222 22444444445543 5688887 885 58999999999999999999987777776665554 44566777
Q ss_pred HHHHHHHh
Q 011286 428 ADVAEQLM 435 (489)
Q Consensus 428 a~i~~~l~ 435 (489)
.++.+.+.
T Consensus 305 r~l~~~l~ 312 (405)
T TIGR00362 305 RELEGALN 312 (405)
T ss_pred HHHHHHHH
Confidence 77766654
No 120
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.48 E-value=3.9e-13 Score=150.00 Aligned_cols=157 Identities=14% Similarity=0.271 Sum_probs=111.9
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhC--CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHH
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQ 292 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g--~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~ 292 (489)
.|+|+++.++.|.+.+...... +. ..+...+||+||||||||.+|+++|..++.+++.++++.......+.+
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~g------l~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~ 532 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAG------LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSR 532 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcc------ccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHH
Confidence 3688888888888777543211 11 122346999999999999999999999999999999988643222332
Q ss_pred HHH---------------H---ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccc-
Q 011286 293 ILI---------------A---TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL- 353 (489)
Q Consensus 293 l~~---------------~---~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl- 353 (489)
++. . ....+||||||||.+-+ ...+.||+.||.-
T Consensus 533 LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------------------------~v~~~LLq~ld~G~ 585 (758)
T PRK11034 533 LIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------------------DVFNLLLQVMDNGT 585 (758)
T ss_pred HcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---------------------------HHHHHHHHHHhcCe
Confidence 221 1 12358999999998832 3556777777732
Q ss_pred cc-CCC-----CceEEEEecCCC-------------------------CCCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011286 354 WS-SCG-----DERIIIFTTNHK-------------------------DRLDPALLRPGRMDVHIHMSYCTPCGFKMLAS 402 (489)
Q Consensus 354 ~s-~~g-----~~~iiI~TTN~~-------------------------~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~ 402 (489)
.. ..| .+.|||+|||.- ..+.|.|+. |+|.+|.|++.+.+....|+.
T Consensus 586 ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~ 663 (758)
T PRK11034 586 LTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVD 663 (758)
T ss_pred eecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHH
Confidence 11 111 357899999922 235577777 999999999999999999998
Q ss_pred HhhC
Q 011286 403 NYLG 406 (489)
Q Consensus 403 ~~l~ 406 (489)
.++.
T Consensus 664 ~~l~ 667 (758)
T PRK11034 664 KFIV 667 (758)
T ss_pred HHHH
Confidence 7775
No 121
>PRK08727 hypothetical protein; Validated
Probab=99.48 E-value=2.1e-12 Score=125.77 Aligned_cols=166 Identities=20% Similarity=0.222 Sum_probs=108.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~ 283 (489)
.....+||+.++.+.- .+..+..... | .+...++||||+|||||+|++|+|+++ +..+..+++..
T Consensus 12 ~~~~~~f~~f~~~~~n---~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 12 YPSDQRFDSYIAAPDG---LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCCcCChhhccCCcHH---HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 3445689998876653 2222222111 2 233569999999999999999998875 55666666554
Q ss_pred cCChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEE
Q 011286 284 VEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERII 363 (489)
Q Consensus 284 ~~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ii 363 (489)
.. ..+...+....+..+|+|||||.+.. .......+..++|.+.. . +.-+
T Consensus 80 ~~--~~~~~~~~~l~~~dlLiIDDi~~l~~----------------------~~~~~~~lf~l~n~~~~---~---~~~v 129 (233)
T PRK08727 80 AA--GRLRDALEALEGRSLVALDGLESIAG----------------------QREDEVALFDFHNRARA---A---GITL 129 (233)
T ss_pred hh--hhHHHHHHHHhcCCEEEEeCcccccC----------------------ChHHHHHHHHHHHHHHH---c---CCeE
Confidence 32 34556666677788999999998753 11223444456665533 1 1335
Q ss_pred EEecC-CCCCC---CccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhH
Q 011286 364 IFTTN-HKDRL---DPALLRPGRM--DVHIHMSYCTPCGFKMLASNYLGITEHPLFLEV 416 (489)
Q Consensus 364 I~TTN-~~~~L---DpALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i 416 (489)
|+|+| .|..+ +|+|.+ || ..+++++.|+.+++..+++......+..+.++.
T Consensus 130 I~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~ 186 (233)
T PRK08727 130 LYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAA 186 (233)
T ss_pred EEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 55555 66655 789998 85 678999999999999999986654444444433
No 122
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=8.7e-13 Score=137.54 Aligned_cols=178 Identities=24% Similarity=0.290 Sum_probs=112.9
Q ss_pred Cccc-ccCCHHHHHHHHHHHHHHHhcHHHHHH----hCCC-CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC
Q 011286 212 TFDT-LAMDFDMKKMIMDDLERFLKRKEFYKR----VGKA-WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE 285 (489)
Q Consensus 212 ~fd~-l~~~~~~K~~i~~~l~~~l~~~~~y~~----~g~~-~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~ 285 (489)
.++. ++|+++.|+.+...+....++-..... -|.. .+.++||+||||||||++|+++|..++.++..++++.+.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 3444 589999998887666433332110000 0111 145799999999999999999999999999988877652
Q ss_pred C--------hHHHHHHHHH------ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhc
Q 011286 286 G--------NKDLRQILIA------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFID 351 (489)
Q Consensus 286 ~--------~~~L~~l~~~------~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 351 (489)
. ...+..++.. ...++||||||||.+....+..+-.. .-....+.+.||+.||
T Consensus 154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~-------------dvsg~~vq~~LL~iLe 220 (413)
T TIGR00382 154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITR-------------DVSGEGVQQALLKIIE 220 (413)
T ss_pred ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccc-------------cccchhHHHHHHHHhh
Confidence 1 2234444432 23578999999999865211100000 1112246677888888
Q ss_pred ccccC---CC------CceEEEEecCCC---------------------------C-----------------------C
Q 011286 352 GLWSS---CG------DERIIIFTTNHK---------------------------D-----------------------R 372 (489)
Q Consensus 352 gl~s~---~g------~~~iiI~TTN~~---------------------------~-----------------------~ 372 (489)
|.... .+ .+.++|+|+|-. + .
T Consensus 221 G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g 300 (413)
T TIGR00382 221 GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFG 300 (413)
T ss_pred ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHh
Confidence 75421 11 245889998861 0 0
Q ss_pred CCccccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011286 373 LDPALLRPGRMDVHIHMSYCTPCGFKMLASNY 404 (489)
Q Consensus 373 LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~ 404 (489)
+.|+|+ ||+|..+.|.+.+.+.+..|+..-
T Consensus 301 ~~PEfl--gRld~Iv~f~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 301 LIPEFI--GRLPVIATLEKLDEEALIAILTKP 330 (413)
T ss_pred hHHHHh--CCCCeEeecCCCCHHHHHHHHHHH
Confidence 224444 599999999999999988887653
No 123
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.47 E-value=1.3e-12 Score=127.29 Aligned_cols=171 Identities=19% Similarity=0.219 Sum_probs=103.4
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcEEEeecCc
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSS 283 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~~~~l~~s~ 283 (489)
..+..+||+.+-. . -+..+..+..+.. .+..+.++||||||||||+|++++|+++. ..+..+++..
T Consensus 15 ~~~~~~fd~f~~~-~-n~~a~~~l~~~~~---------~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 15 LPDDETFASFYPG-D-NDSLLAALQNALR---------QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCcCCccccccC-c-cHHHHHHHHHHHh---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 3445689998743 1 2224444443321 11235799999999999999999999864 3455555443
Q ss_pred cCChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEE
Q 011286 284 VEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERII 363 (489)
Q Consensus 284 ~~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ii 363 (489)
.. ....+++....+-.+|+||||+.+.. .......+..++|.+-. .|...+|
T Consensus 84 ~~--~~~~~~~~~~~~~dlliiDdi~~~~~----------------------~~~~~~~lf~l~n~~~e----~g~~~li 135 (235)
T PRK08084 84 RA--WFVPEVLEGMEQLSLVCIDNIECIAG----------------------DELWEMAIFDLYNRILE----SGRTRLL 135 (235)
T ss_pred Hh--hhhHHHHHHhhhCCEEEEeChhhhcC----------------------CHHHHHHHHHHHHHHHH----cCCCeEE
Confidence 21 11223333333446899999998742 12223344455554322 1222455
Q ss_pred EEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHH
Q 011286 364 IFTTNHKDR---LDPALLRPGRMD--VHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEE 418 (489)
Q Consensus 364 I~TTN~~~~---LDpALlRpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ 418 (489)
+.+++.|.. +.|.|.+ |+. .++++..|+.+++.++++......+..+.+++..
T Consensus 136 ~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~ 193 (235)
T PRK08084 136 ITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGR 193 (235)
T ss_pred EeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 555556555 5789998 875 7899999999999999887554444444444433
No 124
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.8e-12 Score=131.43 Aligned_cols=224 Identities=17% Similarity=0.174 Sum_probs=153.9
Q ss_pred ccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----EEEeecCccCChHHH
Q 011286 216 LAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD-----VYDLELSSVEGNKDL 290 (489)
Q Consensus 216 l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~-----~~~l~~s~~~~~~~L 290 (489)
+..-++..+.+...+..++.. ..|.++++|||||||||.+++-++.++.-. ++.+||....+...+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 666777778777776655543 223469999999999999999999998544 788888876433221
Q ss_pred -HHHH------------------------HHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHH
Q 011286 291 -RQIL------------------------IATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSG 345 (489)
Q Consensus 291 -~~l~------------------------~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 345 (489)
.+++ .......||++||+|.+.. .. ..++-.
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~----------------------~~--~~~LY~ 145 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD----------------------KD--GEVLYS 145 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc----------------------cc--chHHHH
Confidence 2222 2223467999999999964 11 145555
Q ss_pred HHHhhcccccCCCCceEEEEecCCC---CCCCccccCCCce-eeEEEeCCCCHHHHHHHHHHhhCc--CCCCChHhHHHH
Q 011286 346 LLNFIDGLWSSCGDERIIIFTTNHK---DRLDPALLRPGRM-DVHIHMSYCTPCGFKMLASNYLGI--TEHPLFLEVEEL 419 (489)
Q Consensus 346 LL~~ldgl~s~~g~~~iiI~TTN~~---~~LDpALlRpGRf-d~~I~~~~p~~~~~~~l~~~~l~~--~~~~l~~~i~~l 419 (489)
|+...+.. ...+++|+.+|.. +.+||.+.+ ++ ..+|.||+.+.+|...|+...... ....+.+.+-.+
T Consensus 146 L~r~~~~~----~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~l 219 (366)
T COG1474 146 LLRAPGEN----KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKL 219 (366)
T ss_pred HHhhcccc----ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHH
Confidence 55544443 3457899999965 578888875 33 456999999999999999887653 345555555555
Q ss_pred HhccCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhccccccchHHHHHhhHhhHHHHhhhccccc
Q 011286 420 IEKVEVTPADVAEQLMRDEVPKIALSGLIQFLQIKKRETGESKATEAEETARGAENIQELSEKTDEVE 487 (489)
Q Consensus 420 ~~~~~~spa~i~~~l~~~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~e~~~k~~~~~ 487 (489)
+.. -....++|+..|++-+..+.+.......+.....++.++....+...+....+.++
T Consensus 220 ia~---------~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~~~L~ 278 (366)
T COG1474 220 IAA---------LVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLEEVLKTLP 278 (366)
T ss_pred HHH---------HHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHHHHcCC
Confidence 431 11223569999999999999999988888888888888764444444444444443
No 125
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=2.7e-12 Score=138.73 Aligned_cols=190 Identities=16% Similarity=0.171 Sum_probs=122.3
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEeecC
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELS 282 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~~~~l~~s 282 (489)
....+||+++..+.-. .....+..... ..+. +...++|||++|||||+|++|||+++ +..++.+++.
T Consensus 282 ~~~~TFDnFvvG~sN~-~A~aaa~avae------~~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae 353 (617)
T PRK14086 282 NPKYTFDTFVIGASNR-FAHAAAVAVAE------APAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE 353 (617)
T ss_pred CCCCCHhhhcCCCccH-HHHHHHHHHHh------Cccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 3445899987544322 12222222221 1222 23459999999999999999999987 5677778776
Q ss_pred ccCC-------hHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccccc
Q 011286 283 SVEG-------NKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWS 355 (489)
Q Consensus 283 ~~~~-------~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s 355 (489)
.+.. ...+..+.....+..+|+||||+.+.. ....+..|..++|.+-.
T Consensus 354 ef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~g----------------------ke~tqeeLF~l~N~l~e--- 408 (617)
T PRK14086 354 EFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLED----------------------KESTQEEFFHTFNTLHN--- 408 (617)
T ss_pred HHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccC----------------------CHHHHHHHHHHHHHHHh---
Confidence 5421 111122223335678999999998853 11122334445554432
Q ss_pred CCCCceEEEEecCCC----CCCCccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHh-ccCCCHH
Q 011286 356 SCGDERIIIFTTNHK----DRLDPALLRPGRM--DVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE-KVEVTPA 428 (489)
Q Consensus 356 ~~g~~~iiI~TTN~~----~~LDpALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa 428 (489)
. + .-||+|+|.+ ..+++.|.+ || ...+++..|+.+.|..|++..+...+..+.+++.+++. ...-+..
T Consensus 409 ~-g--k~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 409 A-N--KQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIR 483 (617)
T ss_pred c-C--CCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHH
Confidence 1 1 2355577754 357889988 66 77889999999999999999988888888777776654 4566777
Q ss_pred HHHHHHh
Q 011286 429 DVAEQLM 435 (489)
Q Consensus 429 ~i~~~l~ 435 (489)
++...|.
T Consensus 484 ~LegaL~ 490 (617)
T PRK14086 484 ELEGALI 490 (617)
T ss_pred HHHHHHH
Confidence 7777665
No 126
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.42 E-value=2.9e-12 Score=144.08 Aligned_cols=154 Identities=19% Similarity=0.312 Sum_probs=107.8
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCC---Cc-eEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHH-
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAW---KR-GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKD- 289 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~---~r-g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~- 289 (489)
.|+|+++.++.|.+.+... +.|... |. .+||+||||||||++|+++|..++.+++.++++.+.....
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 4667777777666655421 233321 23 4899999999999999999999999999999887632211
Q ss_pred ------------------HHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhc
Q 011286 290 ------------------LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFID 351 (489)
Q Consensus 290 ------------------L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 351 (489)
+.+.+. ....+||+|||||.+-+ ...+.||+.+|
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~~---------------------------~~~~~Ll~~ld 578 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAHP---------------------------DIYNILLQVMD 578 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhcCH---------------------------HHHHHHHHhhc
Confidence 222222 23458999999997732 34566777777
Q ss_pred cccc--CCC-----CceEEEEecCCCC-------------------------CCCccccCCCceeeEEEeCCCCHHHHHH
Q 011286 352 GLWS--SCG-----DERIIIFTTNHKD-------------------------RLDPALLRPGRMDVHIHMSYCTPCGFKM 399 (489)
Q Consensus 352 gl~s--~~g-----~~~iiI~TTN~~~-------------------------~LDpALlRpGRfd~~I~~~~p~~~~~~~ 399 (489)
.-.- ..| .+.+||+|||... .+.|.|+. |||.+|.|.+.+.++...
T Consensus 579 ~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~ 656 (731)
T TIGR02639 579 YATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEK 656 (731)
T ss_pred cCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHH
Confidence 5311 111 2468999998631 24667776 999999999999999999
Q ss_pred HHHHhhC
Q 011286 400 LASNYLG 406 (489)
Q Consensus 400 l~~~~l~ 406 (489)
|++..+.
T Consensus 657 Iv~~~L~ 663 (731)
T TIGR02639 657 IVQKFVD 663 (731)
T ss_pred HHHHHHH
Confidence 9998775
No 127
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.41 E-value=2.2e-12 Score=136.96 Aligned_cols=161 Identities=19% Similarity=0.307 Sum_probs=127.4
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc------------
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------------ 275 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------------ 275 (489)
++|.+|++++|++.+.+.|...+.. .....+|||.||.||||||+|+.+|..++..
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 5689999999999998888776652 2234589999999999999999999988543
Q ss_pred ------------EEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCC
Q 011286 276 ------------VYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (489)
Q Consensus 276 ------------~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (489)
++.+|..+-.+-++++.+..... +.-|.+|||+|.+.
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------------------- 132 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------------------- 132 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-------------------------
Confidence 33344444456788888887763 34699999999883
Q ss_pred chhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChH
Q 011286 338 RFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL 414 (489)
Q Consensus 338 ~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~ 414 (489)
...++.||..++. ++..+++|++|..++++++.+++ |+ .+..|...+.++....+...+..++....+
T Consensus 133 --~~afNALLKTLEE----PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~ 200 (515)
T COG2812 133 --KQAFNALLKTLEE----PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEE 200 (515)
T ss_pred --HHHHHHHhccccc----CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCH
Confidence 4678899998887 45679999999999999999998 76 458899999999998888888766555443
No 128
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.41 E-value=6.5e-12 Score=138.20 Aligned_cols=171 Identities=19% Similarity=0.334 Sum_probs=109.2
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEE
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 277 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~ 277 (489)
-.|.+|++++|.....+.++..+. .+.+..++|+||||||||++|+++++.. +.+++
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 358899999999888777655432 2345679999999999999999998766 35688
Q ss_pred EeecCccCC-hHHHH----------------HHHHH------------ccCCeEEEEccchhhhhhhhhHHhhhhccccc
Q 011286 278 DLELSSVEG-NKDLR----------------QILIA------------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDL 328 (489)
Q Consensus 278 ~l~~s~~~~-~~~L~----------------~l~~~------------~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~ 328 (489)
.++++.+.. ...+. +.+.. ..+..||||||++.+-..
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-------------- 280 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-------------- 280 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--------------
Confidence 888876531 11110 11111 123579999999987321
Q ss_pred ccccccCCCchhhHHHHHHHhhcc--------cc----------------cCCCCceEEE-EecCCCCCCCccccCCCce
Q 011286 329 YRSACNQGNRFQVTLSGLLNFIDG--------LW----------------SSCGDERIII-FTTNHKDRLDPALLRPGRM 383 (489)
Q Consensus 329 ~~~~~~~~~~~~~~ls~LL~~ldg--------l~----------------s~~g~~~iiI-~TTN~~~~LDpALlRpGRf 383 (489)
.+ ..|+..++. .+ ......+++| .||+.++.++++|.+ ||
T Consensus 281 ----------~Q---~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~ 345 (615)
T TIGR02903 281 ----------LQ---NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RC 345 (615)
T ss_pred ----------HH---HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--ce
Confidence 11 112222211 00 0111234444 466778899999988 88
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHh
Q 011286 384 DVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE 421 (489)
Q Consensus 384 d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~ 421 (489)
. .++|++++.+++..|+++++...+..+.+++.+++.
T Consensus 346 ~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~ 382 (615)
T TIGR02903 346 A-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIA 382 (615)
T ss_pred e-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7 578999999999999999876443334444444443
No 129
>PRK05642 DNA replication initiation factor; Validated
Probab=99.40 E-value=7.2e-12 Score=122.10 Aligned_cols=160 Identities=18% Similarity=0.223 Sum_probs=100.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCC-CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAW-KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~-~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
..+..+||+.+... ....+..+..+.... ..| .+.++||||+|||||+|++|+|+++ +..++.++..
T Consensus 12 ~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~-------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 12 LRDDATFANYYPGA--NAAALGYVERLCEAD-------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CCCcccccccCcCC--hHHHHHHHHHHhhcc-------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 44456899987332 233444444332211 122 3678999999999999999999875 5677777766
Q ss_pred ccCChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceE
Q 011286 283 SVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERI 362 (489)
Q Consensus 283 ~~~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~i 362 (489)
++... ...++....+-.+|+|||++.+.+ ....+..+-.++|.+-. . +..+
T Consensus 83 ~~~~~--~~~~~~~~~~~d~LiiDDi~~~~~----------------------~~~~~~~Lf~l~n~~~~---~--g~~i 133 (234)
T PRK05642 83 ELLDR--GPELLDNLEQYELVCLDDLDVIAG----------------------KADWEEALFHLFNRLRD---S--GRRL 133 (234)
T ss_pred HHHhh--hHHHHHhhhhCCEEEEechhhhcC----------------------ChHHHHHHHHHHHHHHh---c--CCEE
Confidence 55321 223333344456999999997743 11223344455554322 1 2345
Q ss_pred EEEecCCCCC---CCccccCCCce--eeEEEeCCCCHHHHHHHHHHhhC
Q 011286 363 IIFTTNHKDR---LDPALLRPGRM--DVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 363 iI~TTN~~~~---LDpALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
||.++..|.. +.|.|.+ |+ ...+.+..|+.+.+..+++....
T Consensus 134 lits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 134 LLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred EEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 5555555543 3688888 77 47788999999999999986554
No 130
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=6.2e-12 Score=133.21 Aligned_cols=156 Identities=17% Similarity=0.264 Sum_probs=103.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCC-------hHHHHHHHHHccCCeEEEEccchhhhhhhhhH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG-------NKDLRQILIATENKSILVVEDIDCCLEMQDRL 318 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~-------~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~ 318 (489)
.+++||||||+|||+|++|+|+++ +..++.++...+.. ...+..+-....+..+|+||||+.+.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~----- 216 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG----- 216 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC-----
Confidence 579999999999999999999987 57777777654311 011111112235678999999998743
Q ss_pred HhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCC-C---CCCCccccCCCcee--eEEEeCCC
Q 011286 319 AKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNH-K---DRLDPALLRPGRMD--VHIHMSYC 392 (489)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~-~---~~LDpALlRpGRfd--~~I~~~~p 392 (489)
....+..+..++|.+-. . + ..+|+|+|. | ..++++|.+ ||. ..+.++.|
T Consensus 217 -----------------k~~~qeelf~l~N~l~~---~-~--k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~p 271 (445)
T PRK12422 217 -----------------KGATQEEFFHTFNSLHT---E-G--KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPL 271 (445)
T ss_pred -----------------ChhhHHHHHHHHHHHHH---C-C--CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCC
Confidence 11123334445554321 1 1 345666654 4 356789998 885 89999999
Q ss_pred CHHHHHHHHHHhhCcCCCCChHhHHH-HHhccCCCHHHHHHHH
Q 011286 393 TPCGFKMLASNYLGITEHPLFLEVEE-LIEKVEVTPADVAEQL 434 (489)
Q Consensus 393 ~~~~~~~l~~~~l~~~~~~l~~~i~~-l~~~~~~spa~i~~~l 434 (489)
+.+.+..+++..+...+..+.+++.. ++....-+..++.+.+
T Consensus 272 d~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l 314 (445)
T PRK12422 272 TKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHAL 314 (445)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999888777677676666 4444445555554444
No 131
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.38 E-value=6.8e-12 Score=110.41 Aligned_cols=116 Identities=29% Similarity=0.377 Sum_probs=80.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCChHHHH-----------HHHHHccCCeEEEEccchhhh
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLR-----------QILIATENKSILVVEDIDCCL 312 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~~~L~-----------~l~~~~~~~sIL~iDdiD~~~ 312 (489)
..++++++||||||||++++++++.+ +.+++.+++.......... ........+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45689999999999999999999999 8999999988764332222 112233468999999999872
Q ss_pred hhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccC--CCCceEEEEecCCCC--CCCccccCCCceeeEEE
Q 011286 313 EMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSS--CGDERIIIFTTNHKD--RLDPALLRPGRMDVHIH 388 (489)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~--~g~~~iiI~TTN~~~--~LDpALlRpGRfd~~I~ 388 (489)
. .....++..+...... ...+..+|++||... .+++.+.. |++.+|.
T Consensus 98 ~---------------------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~ 148 (151)
T cd00009 98 R---------------------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIV 148 (151)
T ss_pred H---------------------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEee
Confidence 1 1112333333333211 124578888998877 77888887 9998888
Q ss_pred eCC
Q 011286 389 MSY 391 (489)
Q Consensus 389 ~~~ 391 (489)
+++
T Consensus 149 ~~~ 151 (151)
T cd00009 149 IPL 151 (151)
T ss_pred cCC
Confidence 874
No 132
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.38 E-value=8.7e-12 Score=124.38 Aligned_cols=149 Identities=23% Similarity=0.307 Sum_probs=97.4
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-EEEeecCccC-C
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD-VYDLELSSVE-G 286 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~-~~~l~~s~~~-~ 286 (489)
+|.++++.+|++.+.-. -..|...+. ..--..++||||||||||+||+.||+-..-+ +..+.++... +
T Consensus 133 RPktL~dyvGQ~hlv~q-~gllrs~ie---------q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~ 202 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQ-DGLLRSLIE---------QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK 202 (554)
T ss_pred CcchHHHhcchhhhcCc-chHHHHHHH---------cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc
Confidence 57889998887665332 111111111 1112379999999999999999999988666 2234444432 4
Q ss_pred hHHHHHHHHHc-------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 287 NKDLRQILIAT-------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 287 ~~~L~~l~~~~-------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
..+++.+|.+. +++.|||||||+.+-. ..+ ..||-.++. +
T Consensus 203 t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk------------------------sQQ---D~fLP~VE~------G 249 (554)
T KOG2028|consen 203 TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK------------------------SQQ---DTFLPHVEN------G 249 (554)
T ss_pred hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh------------------------hhh---hcccceecc------C
Confidence 57788888665 4689999999998832 111 123333332 3
Q ss_pred ceEEEEec--CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011286 360 ERIIIFTT--NHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASN 403 (489)
Q Consensus 360 ~~iiI~TT--N~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~ 403 (489)
.+++|++| |..-.|..||+. |+ .++-+...+.+....|+.+
T Consensus 250 ~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 250 DITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred ceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHH
Confidence 46666644 344688999998 65 4477788888888888776
No 133
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=1.2e-11 Score=131.27 Aligned_cols=191 Identities=18% Similarity=0.256 Sum_probs=116.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEeec
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLEL 281 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~~~~l~~ 281 (489)
+.+..|||+.+..+.-+. ....+..+... -| +..+++||||||||||+|++|+|+++ +..++.+++
T Consensus 98 l~~~~tFdnFv~g~~n~~-a~~~~~~~~~~------~~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSF-AYHAALEVAKN------PG--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCCCCcccccccCCchHH-HHHHHHHHHhC------cC--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 445568999874433322 22223322221 12 23569999999999999999999986 456777776
Q ss_pred CccCC-------hHHHHHHHHHc-cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccc
Q 011286 282 SSVEG-------NKDLRQILIAT-ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL 353 (489)
Q Consensus 282 s~~~~-------~~~L~~l~~~~-~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl 353 (489)
.++.. ...+..+.... .++.+|+|||++.+.+. ...+..+..+++. +
T Consensus 169 ~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~----------------------~~~q~elf~~~n~---l 223 (440)
T PRK14088 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK----------------------TGVQTELFHTFNE---L 223 (440)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc----------------------HHHHHHHHHHHHH---H
Confidence 55310 01112222222 25789999999987531 1112223333333 3
Q ss_pred ccCCCCceEEEEecCCCCC---CCccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHh-ccCCCH
Q 011286 354 WSSCGDERIIIFTTNHKDR---LDPALLRPGRM--DVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE-KVEVTP 427 (489)
Q Consensus 354 ~s~~g~~~iiI~TTN~~~~---LDpALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~sp 427 (489)
... +..+||.+.+.|.. +++.+.+ || ...+.+..|+.+.+..|+++.+...+..+.+++...+. ...-+.
T Consensus 224 ~~~--~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 224 HDS--GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNL 299 (440)
T ss_pred HHc--CCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCH
Confidence 222 22344444455554 4567777 65 56889999999999999999988777777777666554 455677
Q ss_pred HHHHHHHh
Q 011286 428 ADVAEQLM 435 (489)
Q Consensus 428 a~i~~~l~ 435 (489)
.++.+.+.
T Consensus 300 R~L~g~l~ 307 (440)
T PRK14088 300 RRLRGAII 307 (440)
T ss_pred HHHHHHHH
Confidence 77766664
No 134
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=6.9e-11 Score=122.23 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=111.3
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-------------
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------- 274 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------- 274 (489)
.+|++|++|+|++.+++.+.+.+.. ...+.++||+||+|+||+++|.++|+.+-.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 6899999999999999988765541 234568999999999999999999998821
Q ss_pred ---------------------cEEEeecC--c-------cCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhH
Q 011286 275 ---------------------DVYDLELS--S-------VEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRL 318 (489)
Q Consensus 275 ---------------------~~~~l~~s--~-------~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~ 318 (489)
+++.+... + .-..+.++.+.... ..+-|++|||+|.+-
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------ 154 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------ 154 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC------
Confidence 12223211 1 01234555555432 246799999999772
Q ss_pred HhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHH
Q 011286 319 AKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFK 398 (489)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~ 398 (489)
....+.||..++.. ....++|++|+.++.+.|.+.+ |+ .+|.|+.++.++..
T Consensus 155 ---------------------~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~ 206 (365)
T PRK07471 155 ---------------------ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVI 206 (365)
T ss_pred ---------------------HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHH
Confidence 34556788888863 3457888899999999999877 76 56999999999988
Q ss_pred HHHHHhh
Q 011286 399 MLASNYL 405 (489)
Q Consensus 399 ~l~~~~l 405 (489)
.++....
T Consensus 207 ~~L~~~~ 213 (365)
T PRK07471 207 DALAAAG 213 (365)
T ss_pred HHHHHhc
Confidence 8887654
No 135
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.37 E-value=3.9e-11 Score=128.76 Aligned_cols=176 Identities=21% Similarity=0.247 Sum_probs=118.4
Q ss_pred CceEcccCCCCCcccccCCHHHHHHHHHHHHHHHh---c--------------HHHHH----HhCCCCCceEEEECCCCC
Q 011286 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLK---R--------------KEFYK----RVGKAWKRGYLLYGPPGT 259 (489)
Q Consensus 201 ~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~---~--------------~~~y~----~~g~~~~rg~LL~GPpGt 259 (489)
.|.. ...|..|.+|.+++.+-+.++..|..|=- . ++.+. ..+.|.++-+||+||||-
T Consensus 260 LWVd--ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 260 LWVD--KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred eeec--ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 6765 78899999999999999999998876521 0 01111 125677888999999999
Q ss_pred cHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHHHc----------cCCeEEEEccchhhhhhhhhHHhhhhcccccc
Q 011286 260 GKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIAT----------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLY 329 (489)
Q Consensus 260 GKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~----------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~ 329 (489)
||||||+.||.+.||.++++|.|+-.+...++.-+..+ .+|..|+|||||-....
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~--------------- 402 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA--------------- 402 (877)
T ss_pred ChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHH---------------
Confidence 99999999999999999999999988777776555332 46899999999954310
Q ss_pred cccccCCCchhhHHHHHHHhh----ccccc----------CCCCceEEEEecCCCCCCCcccc--CCCceeeEEEeCCCC
Q 011286 330 RSACNQGNRFQVTLSGLLNFI----DGLWS----------SCGDERIIIFTTNHKDRLDPALL--RPGRMDVHIHMSYCT 393 (489)
Q Consensus 330 ~~~~~~~~~~~~~ls~LL~~l----dgl~s----------~~g~~~iiI~TTN~~~~LDpALl--RpGRfd~~I~~~~p~ 393 (489)
.-.++-.+++.- .|-.. ...=.+-||+.+|.. .-|||. | -+-.+|+|..|.
T Consensus 403 ---------~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr--~~A~ii~f~~p~ 469 (877)
T KOG1969|consen 403 ---------AVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLR--PFAEIIAFVPPS 469 (877)
T ss_pred ---------HHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcc--cceEEEEecCCC
Confidence 001111111100 00000 000015688888863 357874 6 577889999998
Q ss_pred HHHHHHHHHHhhC
Q 011286 394 PCGFKMLASNYLG 406 (489)
Q Consensus 394 ~~~~~~l~~~~l~ 406 (489)
....-+=++..+.
T Consensus 470 ~s~Lv~RL~~IC~ 482 (877)
T KOG1969|consen 470 QSRLVERLNEICH 482 (877)
T ss_pred hhHHHHHHHHHHh
Confidence 8765544443333
No 136
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=4.9e-11 Score=122.70 Aligned_cols=180 Identities=16% Similarity=0.164 Sum_probs=118.3
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc------------
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------------ 275 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------------ 275 (489)
.||+.|+.|+|++++++.+...+. . ...+..+||+||+|+|||++|.++|+.+...
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~-----------~-grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR-----------E-GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH-----------c-CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 699999999999999888866543 1 2234579999999999999999999998441
Q ss_pred ------------------EEEeecC---------ccCChHHHHHHH---HHc---cCCeEEEEccchhhhhhhhhHHhhh
Q 011286 276 ------------------VYDLELS---------SVEGNKDLRQIL---IAT---ENKSILVVEDIDCCLEMQDRLAKAK 322 (489)
Q Consensus 276 ------------------~~~l~~s---------~~~~~~~L~~l~---~~~---~~~sIL~iDdiD~~~~~~~~~~~~~ 322 (489)
++.+... ..-+.+.++.+. ... ...-|++|||+|.+-
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~---------- 154 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN---------- 154 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC----------
Confidence 1111100 000123444433 222 235699999999883
Q ss_pred hcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011286 323 AAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLAS 402 (489)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~ 402 (489)
....+.||..++.. ....++|+.|+.++.+.|.+.. |+ .+++|++++.++...++.
T Consensus 155 -----------------~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~ 210 (351)
T PRK09112 155 -----------------RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALS 210 (351)
T ss_pred -----------------HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHH
Confidence 23446688888773 2446777778889999999987 87 689999999999988887
Q ss_pred HhhCcCCCCChHhHHHHHhccCCCHHHHHHHH
Q 011286 403 NYLGITEHPLFLEVEELIEKVEVTPADVAEQL 434 (489)
Q Consensus 403 ~~l~~~~~~l~~~i~~l~~~~~~spa~i~~~l 434 (489)
....... ...+.+..++...+-+|....+.+
T Consensus 211 ~~~~~~~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 211 HLGSSQG-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred HhhcccC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7332111 112223344444445555444433
No 137
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=1.1e-10 Score=118.69 Aligned_cols=148 Identities=16% Similarity=0.224 Sum_probs=109.0
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC--------cEEEeecC-
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF--------DVYDLELS- 282 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~--------~~~~l~~s- 282 (489)
+|++++|++.+++.+...+. ....+..||||||+|+|||++|+++|..+.. +++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~------------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII------------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH------------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 68999999999888877653 1344568999999999999999999998622 44444331
Q ss_pred -ccCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccccc
Q 011286 283 -SVEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWS 355 (489)
Q Consensus 283 -~~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s 355 (489)
...+.+.++.+.... ...-|++|||+|.+- ....+.||..++..
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~---------------------------~~a~naLLK~LEep-- 120 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT---------------------------EQAQNAFLKTIEEP-- 120 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC---------------------------HHHHHHHHHHhcCC--
Confidence 112345677766533 235799999999773 23456788888873
Q ss_pred CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011286 356 SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYL 405 (489)
Q Consensus 356 ~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l 405 (489)
+...++|++|+.++.|-|.+.. |. .+++|+.++.++....+...+
T Consensus 121 --p~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 121 --PKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred --CCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 3557788888889999999988 76 579999999999877665543
No 138
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.35 E-value=4.1e-12 Score=128.07 Aligned_cols=133 Identities=18% Similarity=0.200 Sum_probs=92.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHH-------------------HHHHccCCeEEEEcc
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQ-------------------ILIATENKSILVVED 307 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~-------------------l~~~~~~~sIL~iDd 307 (489)
.++.+||.||||||||++++++|..++.+++.++++......++.. +......+.+|++||
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDE 142 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDE 142 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEech
Confidence 3578999999999999999999999999999998776422211110 111224578999999
Q ss_pred chhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHh-----hccc--ccCCCCceEEEEecCCCC---------
Q 011286 308 IDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNF-----IDGL--WSSCGDERIIIFTTNHKD--------- 371 (489)
Q Consensus 308 iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~-----ldgl--~s~~g~~~iiI~TTN~~~--------- 371 (489)
||..-+ .....|+.+|.. +++. .-.+.....+|+|+|..+
T Consensus 143 in~a~p------------------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~ 198 (327)
T TIGR01650 143 YDAGRP------------------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYH 198 (327)
T ss_pred hhccCH------------------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCccee
Confidence 997732 223334444442 1110 001123467899999754
Q ss_pred ---CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011286 372 ---RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYL 405 (489)
Q Consensus 372 ---~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l 405 (489)
.|++|++. ||-+.+.++||+.+.-..|+....
T Consensus 199 Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 199 GTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred eeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 46899999 999899999999999988887654
No 139
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.34 E-value=1.5e-12 Score=116.06 Aligned_cols=105 Identities=34% Similarity=0.450 Sum_probs=72.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHH---------------HccCCeEEEEccchhhhhh
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILI---------------ATENKSILVVEDIDCCLEM 314 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~---------------~~~~~sIL~iDdiD~~~~~ 314 (489)
++||+||||||||+||+.+|..++.+++.+.++...+..+|..... ...+++|+|||||+..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~-- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAP-- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCC--
Confidence 5899999999999999999999999999999988765555542221 11247999999999763
Q ss_pred hhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccc----------ccCCCC-----ceEEEEecCCCC----CCCc
Q 011286 315 QDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL----------WSSCGD-----ERIIIFTTNHKD----RLDP 375 (489)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl----------~s~~g~-----~~iiI~TTN~~~----~LDp 375 (489)
..++..|++.+++- ...... +..||+|+|..+ .+++
T Consensus 79 -------------------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~ 133 (139)
T PF07728_consen 79 -------------------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSP 133 (139)
T ss_dssp -------------------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCH
T ss_pred -------------------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCH
Confidence 22333344444321 001111 379999999988 9999
Q ss_pred cccCCCce
Q 011286 376 ALLRPGRM 383 (489)
Q Consensus 376 ALlRpGRf 383 (489)
||++ ||
T Consensus 134 al~~--Rf 139 (139)
T PF07728_consen 134 ALLD--RF 139 (139)
T ss_dssp HHHT--T-
T ss_pred HHHh--hC
Confidence 9999 87
No 140
>PRK06620 hypothetical protein; Validated
Probab=99.34 E-value=2.5e-11 Score=116.69 Aligned_cols=159 Identities=18% Similarity=0.236 Sum_probs=99.9
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCC-CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCCh
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAW-KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN 287 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~-~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~ 287 (489)
++-+||+++..+.-.. ....+..+.. ..+..+ .+.++||||||||||+|++++|+..+..++. .... .
T Consensus 11 ~~~tfd~Fvvg~~N~~-a~~~~~~~~~------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~--~ 79 (214)
T PRK06620 11 SKYHPDEFIVSSSNDQ-AYNIIKNWQC------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF--N 79 (214)
T ss_pred CCCCchhhEecccHHH-HHHHHHHHHH------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh--c
Confidence 3448999876553322 3344443321 123222 3789999999999999999999998763322 1111 1
Q ss_pred HHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEec
Q 011286 288 KDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTT 367 (489)
Q Consensus 288 ~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TT 367 (489)
. .. .....+|+|||||.+- ...+..++|.+..- +..++|.++
T Consensus 80 ~---~~---~~~~d~lliDdi~~~~---------------------------~~~lf~l~N~~~e~-----g~~ilits~ 121 (214)
T PRK06620 80 E---EI---LEKYNAFIIEDIENWQ---------------------------EPALLHIFNIINEK-----QKYLLLTSS 121 (214)
T ss_pred h---hH---HhcCCEEEEeccccch---------------------------HHHHHHHHHHHHhc-----CCEEEEEcC
Confidence 1 11 1245799999999431 13455666666541 235666666
Q ss_pred CCCCC--CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHH
Q 011286 368 NHKDR--LDPALLRPGRMD--VHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEEL 419 (489)
Q Consensus 368 N~~~~--LDpALlRpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l 419 (489)
..|.. + |+|.. |+. ..+++..|+.+.+..+++......+..+.+++.+.
T Consensus 122 ~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~ 174 (214)
T PRK06620 122 DKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDF 174 (214)
T ss_pred CCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 55554 5 78887 774 46999999999999999887765555555555443
No 141
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-11 Score=133.75 Aligned_cols=182 Identities=30% Similarity=0.390 Sum_probs=138.7
Q ss_pred HhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc------CChHHHHHHHHHcc--CCeEEEE
Q 011286 234 LKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV------EGNKDLRQILIATE--NKSILVV 305 (489)
Q Consensus 234 l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~------~~~~~L~~l~~~~~--~~sIL~i 305 (489)
+..+..++..|..++++++++||||||||++++++|+. +.....++...+ .....++.++.... .|+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34567788899999999999999999999999999999 555454544443 23566677776653 4799999
Q ss_pred ccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceee
Q 011286 306 EDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDV 385 (489)
Q Consensus 306 DdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~ 385 (489)
||+|.+.+.+... . ........++++..+|++. .+. +++++.||.+..+|+++.+||||+.
T Consensus 83 d~~~~~~~~~~~~---~-------------~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~ 143 (494)
T COG0464 83 DEIDALAPKRSSD---Q-------------GEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDR 143 (494)
T ss_pred chhhhcccCcccc---c-------------cchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccce
Confidence 9999998644330 0 3455778899999999997 456 8889999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHh-ccCCCHHHHHHHHh
Q 011286 386 HIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE-KVEVTPADVAEQLM 435 (489)
Q Consensus 386 ~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i~~~l~ 435 (489)
.+.++.|+...+..+..................++. ...++.+++...+.
T Consensus 144 ~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~ 194 (494)
T COG0464 144 EIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAK 194 (494)
T ss_pred eeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHH
Confidence 999999999998877766554322222334555554 34588888877663
No 142
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.34 E-value=3.8e-11 Score=122.38 Aligned_cols=156 Identities=21% Similarity=0.271 Sum_probs=102.4
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC-------CcEEE--e
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------FDVYD--L 279 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-------~~~~~--l 279 (489)
.|.+|+.++|++++++.+.-.+.. +-..++||+||||||||++++++|+.+. .++-. +
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 477899999999998877542210 1125799999999999999999999982 21110 0
Q ss_pred ----ecC-----c-------------------cCChHHHHHHHHH-----------ccCCeEEEEccchhhhhhhhhHHh
Q 011286 280 ----ELS-----S-------------------VEGNKDLRQILIA-----------TENKSILVVEDIDCCLEMQDRLAK 320 (489)
Q Consensus 280 ----~~s-----~-------------------~~~~~~L~~l~~~-----------~~~~sIL~iDdiD~~~~~~~~~~~ 320 (489)
++. . +-+.-.+.+.+.. .....+||+|||+.+-
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~-------- 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE-------- 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC--------
Confidence 000 0 1111122222111 1234699999999873
Q ss_pred hhhcccccccccccCCCchhhHHHHHHHhhcc---------cccCCCCceEEEEecCCCC-CCCccccCCCceeeEEEeC
Q 011286 321 AKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG---------LWSSCGDERIIIFTTNHKD-RLDPALLRPGRMDVHIHMS 390 (489)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------l~s~~g~~~iiI~TTN~~~-~LDpALlRpGRfd~~I~~~ 390 (489)
..+.+.|++.|+. .....+..+++|+|+|..+ .++++|+. ||.++|.++
T Consensus 142 -------------------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~ 200 (334)
T PRK13407 142 -------------------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVR 200 (334)
T ss_pred -------------------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcC
Confidence 2445566666643 2112234578888888654 68999999 999999999
Q ss_pred CCCH-HHHHHHHHHhhC
Q 011286 391 YCTP-CGFKMLASNYLG 406 (489)
Q Consensus 391 ~p~~-~~~~~l~~~~l~ 406 (489)
+|.. +++.+++.....
T Consensus 201 ~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 201 SPRDVETRVEVIRRRDA 217 (334)
T ss_pred CCCcHHHHHHHHHHhhc
Confidence 9988 788888877543
No 143
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.32 E-value=1.8e-11 Score=118.10 Aligned_cols=188 Identities=19% Similarity=0.227 Sum_probs=109.5
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEeecCcc
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELSSV 284 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~~~~l~~s~~ 284 (489)
.-|||+.+-.+.-+. ....+......+ |. ....++||||+|+|||+|.+|+|+++ +..++.++...+
T Consensus 4 ~~tFdnfv~g~~N~~-a~~~~~~ia~~~------~~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 4 KYTFDNFVVGESNEL-AYAAAKAIAENP------GE-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp T-SCCCS--TTTTHH-HHHHHHHHHHST------TT-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCccccCCcCCcHHH-HHHHHHHHHhcC------CC-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 348999864333222 222233222221 22 22458999999999999999999986 566777776554
Q ss_pred C-------ChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCC
Q 011286 285 E-------GNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSC 357 (489)
Q Consensus 285 ~-------~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~ 357 (489)
. ....+..+......-.+|+||||+.+.+. ...+..+..++|.+-. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~----------------------~~~q~~lf~l~n~~~~---~- 129 (219)
T PF00308_consen 76 IREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGK----------------------QRTQEELFHLFNRLIE---S- 129 (219)
T ss_dssp HHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTH----------------------HHHHHHHHHHHHHHHH---T-
T ss_pred HHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCc----------------------hHHHHHHHHHHHHHHh---h-
Confidence 1 11223344455567889999999998531 1123444455554433 2
Q ss_pred CCceEEEEecCCCCCC---CccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHh-ccCCCHHHHH
Q 011286 358 GDERIIIFTTNHKDRL---DPALLRPGRM--DVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE-KVEVTPADVA 431 (489)
Q Consensus 358 g~~~iiI~TTN~~~~L---DpALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa~i~ 431 (489)
+..+||.+...|..| +|.|.. || ...+++..|+.+.+..+++......+..+.+++...+. ...-+..++.
T Consensus 130 -~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 130 -GKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp -TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHH
T ss_pred -CCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHH
Confidence 335555555566554 567766 65 45899999999999999999998888888777766554 3455666665
Q ss_pred HHH
Q 011286 432 EQL 434 (489)
Q Consensus 432 ~~l 434 (489)
..+
T Consensus 207 ~~l 209 (219)
T PF00308_consen 207 GAL 209 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 144
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.31 E-value=2.8e-11 Score=123.84 Aligned_cols=130 Identities=25% Similarity=0.280 Sum_probs=90.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHH--HH----------ccC---Ce---EEEEccch
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQIL--IA----------TEN---KS---ILVVEDID 309 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~--~~----------~~~---~s---IL~iDdiD 309 (489)
.+.+||-||||||||+||+++|..++.+++.+.|+.-....++.-.. .. .+. .. |+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 56899999999999999999999999999999998653333332111 10 111 13 99999999
Q ss_pred hhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc-------cc-cCCCCceEEEEecC-----CCCCCCcc
Q 011286 310 CCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG-------LW-SSCGDERIIIFTTN-----HKDRLDPA 376 (489)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-------l~-s~~g~~~iiI~TTN-----~~~~LDpA 376 (489)
... ..+.+.||..|+. .. -.-....++|+|+| ....|++|
T Consensus 123 ra~---------------------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA 175 (329)
T COG0714 123 RAP---------------------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEA 175 (329)
T ss_pred cCC---------------------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHH
Confidence 763 2344555655554 11 11224578888889 55678999
Q ss_pred ccCCCceeeEEEeCCCC-HHHHHHHHHHhhC
Q 011286 377 LLRPGRMDVHIHMSYCT-PCGFKMLASNYLG 406 (489)
Q Consensus 377 LlRpGRfd~~I~~~~p~-~~~~~~l~~~~l~ 406 (489)
+++ ||-..++++||. ..+...+......
T Consensus 176 ~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 176 LLD--RFLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred HHh--hEEEEEecCCCCchHHHHHHHHhCcc
Confidence 999 999999999994 4445555554443
No 145
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=3.5e-11 Score=132.42 Aligned_cols=203 Identities=19% Similarity=0.214 Sum_probs=133.8
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEEeec
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLEL 281 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~~l~~ 281 (489)
.+|.|+|-++..+++++.|. ..-+.+-+|.|+||+|||.++..+|... +..++.+|+
T Consensus 168 klDPvIGRd~EI~r~iqIL~-------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILS-------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHh-------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 68899999988888888776 3446688999999999999999999876 678899999
Q ss_pred CccC--------ChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhc
Q 011286 282 SSVE--------GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFID 351 (489)
Q Consensus 282 s~~~--------~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 351 (489)
+.+. -++.|+.++.... .+.||||||||.+.+.....+. ..-.+.+| .
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-------------------a~DAaNiL---K 292 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-------------------AMDAANLL---K 292 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-------------------ccchhhhh---H
Confidence 8872 2577888886653 3799999999999863322110 01111122 1
Q ss_pred ccccCCCCceEEEEecC------CCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC--CCCChHhHHHHHhcc
Q 011286 352 GLWSSCGDERIIIFTTN------HKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT--EHPLFLEVEELIEKV 423 (489)
Q Consensus 352 gl~s~~g~~~iiI~TTN------~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~--~~~l~~~i~~l~~~~ 423 (489)
... .. ++.-+|++|. +.++ |+||-| ||.. |.+..|+.++-..|++..-... +|...-.-..+...+
T Consensus 293 PaL-AR-GeL~~IGATT~~EYRk~iEK-D~AL~R--RFQ~-V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv 366 (786)
T COG0542 293 PAL-AR-GELRCIGATTLDEYRKYIEK-DAALER--RFQK-VLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAV 366 (786)
T ss_pred HHH-hc-CCeEEEEeccHHHHHHHhhh-chHHHh--cCce-eeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHH
Confidence 111 12 3455566555 2233 899999 9965 9999999999777765533221 222111112222222
Q ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhcc
Q 011286 424 EVTPADVAEQLMRDEVPKIALSGLIQFLQIKKRETG 459 (489)
Q Consensus 424 ~~spa~i~~~l~~~~~~~~al~~l~~~l~~~~~~~~ 459 (489)
.+|-. ++...--||.|++.+.++....+.+..
T Consensus 367 ~LS~R----YI~dR~LPDKAIDLiDeA~a~~~l~~~ 398 (786)
T COG0542 367 TLSDR----YIPDRFLPDKAIDLLDEAGARVRLEID 398 (786)
T ss_pred HHHHh----hcccCCCCchHHHHHHHHHHHHHhccc
Confidence 23322 222334699999999999998888644
No 146
>PHA02244 ATPase-like protein
Probab=99.30 E-value=2.6e-11 Score=123.67 Aligned_cols=121 Identities=19% Similarity=0.345 Sum_probs=81.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCc----c----CChHHHH--HHHHHccCCeEEEEccchhhhhhhhh
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS----V----EGNKDLR--QILIATENKSILVVEDIDCCLEMQDR 317 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~----~----~~~~~L~--~l~~~~~~~sIL~iDdiD~~~~~~~~ 317 (489)
+..+||+||||||||++|++||..++.+++.++... + .....+. .++.......+|+||||+.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p---- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIP---- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCH----
Confidence 357999999999999999999999999999887321 0 1111111 3344456789999999997732
Q ss_pred HHhhhhcccccccccccCCCchhhHHHHHHH-----hhcccccCCCCceEEEEecCCC-----------CCCCccccCCC
Q 011286 318 LAKAKAAIPDLYRSACNQGNRFQVTLSGLLN-----FIDGLWSSCGDERIIIFTTNHK-----------DRLDPALLRPG 381 (489)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~-----~ldgl~s~~g~~~iiI~TTN~~-----------~~LDpALlRpG 381 (489)
.....|+.++. .+++.. ....+.-+|+|+|.+ ..|++|++.
T Consensus 195 --------------------~vq~~L~~lLd~r~l~l~g~~i-~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD-- 251 (383)
T PHA02244 195 --------------------EALIIINSAIANKFFDFADERV-TAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD-- 251 (383)
T ss_pred --------------------HHHHHHHHHhccCeEEecCcEE-ecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--
Confidence 11222333331 122221 112356889999963 578999999
Q ss_pred ceeeEEEeCCCCHHH
Q 011286 382 RMDVHIHMSYCTPCG 396 (489)
Q Consensus 382 Rfd~~I~~~~p~~~~ 396 (489)
|| .+|+|+||+..+
T Consensus 252 RF-v~I~~dyp~~~E 265 (383)
T PHA02244 252 RF-APIEFDYDEKIE 265 (383)
T ss_pred hc-EEeeCCCCcHHH
Confidence 99 579999998544
No 147
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=3.9e-11 Score=127.50 Aligned_cols=188 Identities=13% Similarity=0.214 Sum_probs=119.8
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEeecCcc
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELSSV 284 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~~~~l~~s~~ 284 (489)
+.|||+.+..+.-. .....+..+... .|.. ..+++||||+|||||+|++|+++++ +..++.++..++
T Consensus 111 ~~tFdnFv~g~~n~-~A~~aa~~~a~~------~~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSNE-QAFIAVQTVSKN------PGIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcHH-HHHHHHHHHHhC------cCcc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 46888877544322 233333333222 1322 2579999999999999999999976 467777766554
Q ss_pred CC--------h-HHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccccc
Q 011286 285 EG--------N-KDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWS 355 (489)
Q Consensus 285 ~~--------~-~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s 355 (489)
.. . ..+..+.....+..+|+||||+.+.+ .......+..++|.+..-
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~----------------------k~~~~e~lf~l~N~~~~~-- 238 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY----------------------KEKTNEIFFTIFNNFIEN-- 238 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC----------------------CHHHHHHHHHHHHHHHHc--
Confidence 11 0 22333334445678999999997742 122344556666665442
Q ss_pred CCCCceEEEEecCCC-C---CCCccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCcCCC--CChHhHHHH-HhccCCC
Q 011286 356 SCGDERIIIFTTNHK-D---RLDPALLRPGRM--DVHIHMSYCTPCGFKMLASNYLGITEH--PLFLEVEEL-IEKVEVT 426 (489)
Q Consensus 356 ~~g~~~iiI~TTN~~-~---~LDpALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~~~~~--~l~~~i~~l-~~~~~~s 426 (489)
+ ..+|+|+|.+ + .+++.|.. || ...+.+..|+.+++..++++.+...+. .+.+++... +....-+
T Consensus 239 --~--k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd 312 (450)
T PRK14087 239 --D--KQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDD 312 (450)
T ss_pred --C--CcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCC
Confidence 1 2456666643 3 45788888 77 588999999999999999998876542 455555444 4455677
Q ss_pred HHHHHHHHh
Q 011286 427 PADVAEQLM 435 (489)
Q Consensus 427 pa~i~~~l~ 435 (489)
+..+.+.|.
T Consensus 313 ~R~L~gaL~ 321 (450)
T PRK14087 313 VRKIKGSVS 321 (450)
T ss_pred HHHHHHHHH
Confidence 777777664
No 148
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.29 E-value=7.4e-11 Score=120.65 Aligned_cols=154 Identities=19% Similarity=0.273 Sum_probs=102.5
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-------cEE------
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-------DVY------ 277 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~-------~~~------ 277 (489)
-+|+.++|++++|..++..+.. +...|+||.||+|||||++++++++.+.. ++.
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p 80 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDP 80 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCCh
Confidence 3899999999999999775542 33468999999999999999999888731 111
Q ss_pred ----------------------EeecCcc---CChH------HHHHHHHH-----------ccCCeEEEEccchhhhhhh
Q 011286 278 ----------------------DLELSSV---EGNK------DLRQILIA-----------TENKSILVVEDIDCCLEMQ 315 (489)
Q Consensus 278 ----------------------~l~~s~~---~~~~------~L~~l~~~-----------~~~~sIL~iDdiD~~~~~~ 315 (489)
.+.+..+ .+++ ++.+.|.. .....||++|||+.+-+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~-- 158 (350)
T CHL00081 81 ELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD-- 158 (350)
T ss_pred hhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH--
Confidence 0000000 0111 12222221 12358999999998842
Q ss_pred hhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc---------cccCCCCceEEEEecCCCC-CCCccccCCCceee
Q 011286 316 DRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG---------LWSSCGDERIIIFTTNHKD-RLDPALLRPGRMDV 385 (489)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------l~s~~g~~~iiI~TTN~~~-~LDpALlRpGRfd~ 385 (489)
.+.+.||+.|+. ........+++|+|.|..+ .+.++|+. ||.+
T Consensus 159 -------------------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l 211 (350)
T CHL00081 159 -------------------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGM 211 (350)
T ss_pred -------------------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCc
Confidence 233446666542 2212233467777777554 69999999 9999
Q ss_pred EEEeCCCC-HHHHHHHHHHhhC
Q 011286 386 HIHMSYCT-PCGFKMLASNYLG 406 (489)
Q Consensus 386 ~I~~~~p~-~~~~~~l~~~~l~ 406 (489)
+|.+.+|+ .+.+.+|++....
T Consensus 212 ~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 212 HAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred eeecCCCCChHHHHHHHHhhhc
Confidence 99999998 5888888887543
No 149
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5.7e-11 Score=130.82 Aligned_cols=156 Identities=21% Similarity=0.321 Sum_probs=117.0
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCC----CCceEEEECCCCCcHHHHHHHHHHHcC---CcEEEeecCccCC
Q 011286 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSSVEG 286 (489)
Q Consensus 214 d~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~----~~rg~LL~GPpGtGKTsla~aiA~~l~---~~~~~l~~s~~~~ 286 (489)
..|+|+++.-+.|.+.|.. .+.|.. |-..+||.||+|+|||.||+++|..+. -.++.+|+|++..
T Consensus 491 ~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 4577887777777666653 233432 223578999999999999999999996 8999999999976
Q ss_pred hHHHHHHHHHcc-----------------C-CeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHH
Q 011286 287 NKDLRQILIATE-----------------N-KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLN 348 (489)
Q Consensus 287 ~~~L~~l~~~~~-----------------~-~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 348 (489)
...+.++....+ + -|||++|||+..- ..+++-||+
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAH---------------------------pdV~nilLQ 615 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAH---------------------------PDVFNLLLQ 615 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcC---------------------------HHHHHHHHH
Confidence 666666663332 2 4899999999762 467788999
Q ss_pred hhcccccCCCC-------ceEEEEecCCC----------------------------CCCCccccCCCceeeEEEeCCCC
Q 011286 349 FIDGLWSSCGD-------ERIIIFTTNHK----------------------------DRLDPALLRPGRMDVHIHMSYCT 393 (489)
Q Consensus 349 ~ldgl~s~~g~-------~~iiI~TTN~~----------------------------~~LDpALlRpGRfd~~I~~~~p~ 393 (489)
.+|.-.-+.+. +.|||||||-- ....|+|+. |+|.+|.|.+.+
T Consensus 616 VlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~ 693 (786)
T COG0542 616 VLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLS 693 (786)
T ss_pred HhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCC
Confidence 99854332222 35999999931 123566776 999999999999
Q ss_pred HHHHHHHHHHhhC
Q 011286 394 PCGFKMLASNYLG 406 (489)
Q Consensus 394 ~~~~~~l~~~~l~ 406 (489)
.+...+|+..++.
T Consensus 694 ~~~l~~Iv~~~L~ 706 (786)
T COG0542 694 KEVLERIVDLQLN 706 (786)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998876
No 150
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.28 E-value=7.7e-11 Score=134.24 Aligned_cols=157 Identities=17% Similarity=0.308 Sum_probs=108.9
Q ss_pred cccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCC---C-ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC
Q 011286 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAW---K-RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE 285 (489)
Q Consensus 213 fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~---~-rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~ 285 (489)
++.|+|+....+.|...+.... .|... | ..+||+||||||||++|++||+.+ +.+++.++++.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 5678898888888877775432 12211 2 358999999999999999999987 4578888888764
Q ss_pred ChHHHHHHH---------------HH---ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHH
Q 011286 286 GNKDLRQIL---------------IA---TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLL 347 (489)
Q Consensus 286 ~~~~L~~l~---------------~~---~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 347 (489)
......+++ .. ....+||+||||+.+- ....+.|+
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~---------------------------~~v~~~Ll 691 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH---------------------------PDVFNILL 691 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC---------------------------HHHHHHHH
Confidence 333333322 11 1224899999999762 23456667
Q ss_pred Hhhcccc--cCCC-----CceEEEEecCCC-------------------------CCCCccccCCCceeeEEEeCCCCHH
Q 011286 348 NFIDGLW--SSCG-----DERIIIFTTNHK-------------------------DRLDPALLRPGRMDVHIHMSYCTPC 395 (489)
Q Consensus 348 ~~ldgl~--s~~g-----~~~iiI~TTN~~-------------------------~~LDpALlRpGRfd~~I~~~~p~~~ 395 (489)
+.+|.-. ...| .+.+||+|||.. ..+.|+|+. |+|.++.|.+++.+
T Consensus 692 ~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~e 769 (857)
T PRK10865 692 QVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQ 769 (857)
T ss_pred HHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHH
Confidence 7775321 1111 235899999972 234578887 99999999999999
Q ss_pred HHHHHHHHhhC
Q 011286 396 GFKMLASNYLG 406 (489)
Q Consensus 396 ~~~~l~~~~l~ 406 (489)
....|+..++.
T Consensus 770 dl~~Iv~~~L~ 780 (857)
T PRK10865 770 HIASIAQIQLQ 780 (857)
T ss_pred HHHHHHHHHHH
Confidence 99999988875
No 151
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.28 E-value=8.9e-11 Score=110.32 Aligned_cols=124 Identities=20% Similarity=0.282 Sum_probs=90.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC------------------------cEEEeecCcc-CChHHHHHHHHHc----
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF------------------------DVYDLELSSV-EGNKDLRQILIAT---- 297 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~~~~l~~s~~-~~~~~L~~l~~~~---- 297 (489)
.+..||||||||+|||++++++|+.+.. ++..++...- .+.+.++.+....
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 4568999999999999999999999743 2333333221 2345666555443
Q ss_pred --cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCc
Q 011286 298 --ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDP 375 (489)
Q Consensus 298 --~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDp 375 (489)
..+.|++|||+|.+.. ...+.||..|+.. +...++|++||.+..+.+
T Consensus 93 ~~~~~kviiide~~~l~~---------------------------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNE---------------------------AAANALLKTLEEP----PPNTLFILITPSPEKLLP 141 (188)
T ss_pred ccCCeEEEEEechhhhCH---------------------------HHHHHHHHHhcCC----CCCeEEEEEECChHhChH
Confidence 2357999999998732 2345688888773 245678888888899999
Q ss_pred cccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011286 376 ALLRPGRMDVHIHMSYCTPCGFKMLASNY 404 (489)
Q Consensus 376 ALlRpGRfd~~I~~~~p~~~~~~~l~~~~ 404 (489)
++.+ |+ ..++|++|+.++...++...
T Consensus 142 ~i~s--r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 142 TIRS--RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred HHHh--hc-EEeeCCCCCHHHHHHHHHHc
Confidence 9998 76 47999999999988877765
No 152
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.26 E-value=2.5e-11 Score=125.41 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=51.7
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhC-CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g-~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~ 284 (489)
.++|+++.|+.+...+.....+......++ --.|+++||+||||||||++++++|..++.+++.++.+.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 478999999988776664333222111111 1235899999999999999999999999999999997643
No 153
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.26 E-value=2.1e-11 Score=126.06 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=50.9
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhCC-CCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~-~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~ 284 (489)
.++|+++.|+.+...+....++......... -.+.++||+||||||||++|+++|..++.+++.++.+.+
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f 86 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhh
Confidence 3889999999997766532222111001111 125789999999999999999999999999999987644
No 154
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.25 E-value=1.7e-10 Score=131.77 Aligned_cols=157 Identities=18% Similarity=0.311 Sum_probs=108.6
Q ss_pred cccccCCHHHHHHHHHHHHHHHhcHHHHHHhCC----CCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC
Q 011286 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK----AWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE 285 (489)
Q Consensus 213 fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~----~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~ 285 (489)
-..|+|++...+.|.+.+.... .|. .+...+||+||||||||++|+++|..+ +.+++.++++.+.
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~ 635 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYM 635 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhc
Confidence 3568888888888877776432 121 123458999999999999999999988 5688999988764
Q ss_pred ChHHHHHHH----------------H--HccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHH
Q 011286 286 GNKDLRQIL----------------I--ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLL 347 (489)
Q Consensus 286 ~~~~L~~l~----------------~--~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 347 (489)
......+++ . .....+||||||||.+- ....+.||
T Consensus 636 ~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~---------------------------~~v~~~Ll 688 (852)
T TIGR03346 636 EKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH---------------------------PDVFNVLL 688 (852)
T ss_pred ccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC---------------------------HHHHHHHH
Confidence 333222221 1 11234799999999763 23456677
Q ss_pred Hhhcccc--cCCC-----CceEEEEecCCCC-------------------------CCCccccCCCceeeEEEeCCCCHH
Q 011286 348 NFIDGLW--SSCG-----DERIIIFTTNHKD-------------------------RLDPALLRPGRMDVHIHMSYCTPC 395 (489)
Q Consensus 348 ~~ldgl~--s~~g-----~~~iiI~TTN~~~-------------------------~LDpALlRpGRfd~~I~~~~p~~~ 395 (489)
+.+|.-. ...| .+.+||+|||... .+.|.|+. |+|.++.|.+++.+
T Consensus 689 ~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e 766 (852)
T TIGR03346 689 QVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGRE 766 (852)
T ss_pred HHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHH
Confidence 7775321 1111 3468999999721 13466666 99999999999999
Q ss_pred HHHHHHHHhhC
Q 011286 396 GFKMLASNYLG 406 (489)
Q Consensus 396 ~~~~l~~~~l~ 406 (489)
....|+...+.
T Consensus 767 ~l~~I~~l~L~ 777 (852)
T TIGR03346 767 QIARIVEIQLG 777 (852)
T ss_pred HHHHHHHHHHH
Confidence 99999887765
No 155
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.25 E-value=4.4e-10 Score=114.83 Aligned_cols=153 Identities=21% Similarity=0.301 Sum_probs=101.1
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC-------CcEE-------
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-------FDVY------- 277 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-------~~~~------- 277 (489)
+|..++|++++|..++-.+.. +...++||.||||||||++++++++.+. .++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 588999999999988654431 2245799999999999999999998872 1111
Q ss_pred ------E------------------eecC------ccCChHHHHHHHH-----------HccCCeEEEEccchhhhhhhh
Q 011286 278 ------D------------------LELS------SVEGNKDLRQILI-----------ATENKSILVVEDIDCCLEMQD 316 (489)
Q Consensus 278 ------~------------------l~~s------~~~~~~~L~~l~~-----------~~~~~sIL~iDdiD~~~~~~~ 316 (489)
. +++. .+.+.-++.+.+. ...++.+||||||+.+-.
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 0 0100 1112223333221 113358999999998732
Q ss_pred hHHhhhhcccccccccccCCCchhhHHHHHHHhhc---------ccccCCCCceEEEEecCCCC-CCCccccCCCceeeE
Q 011286 317 RLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFID---------GLWSSCGDERIIIFTTNHKD-RLDPALLRPGRMDVH 386 (489)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld---------gl~s~~g~~~iiI~TTN~~~-~LDpALlRpGRfd~~ 386 (489)
.+.+.|++.|+ |........+++|+|+|..+ .+.++|+. ||.++
T Consensus 146 ------------------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~ 199 (337)
T TIGR02030 146 ------------------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLH 199 (337)
T ss_pred ------------------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceE
Confidence 33455566653 22222233467788888554 68999999 99999
Q ss_pred EEeCCCCH-HHHHHHHHHhhC
Q 011286 387 IHMSYCTP-CGFKMLASNYLG 406 (489)
Q Consensus 387 I~~~~p~~-~~~~~l~~~~l~ 406 (489)
+.+++|.. +++.+|+++...
T Consensus 200 i~l~~p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 200 AEIRTVRDVELRVEIVERRTE 220 (337)
T ss_pred EECCCCCCHHHHHHHHHhhhh
Confidence 99999986 778888877543
No 156
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.23 E-value=1.2e-10 Score=132.48 Aligned_cols=155 Identities=23% Similarity=0.326 Sum_probs=105.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCC----CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCC
Q 011286 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG 286 (489)
Q Consensus 214 d~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~----~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~ 286 (489)
+.|+|+++..+.|...+... +.|.. +...+||+||||||||+||+++|..+ +.+++.++++....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 46778888887777666432 22221 12358999999999999999999988 46788888877632
Q ss_pred hHH-------------------HHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHH
Q 011286 287 NKD-------------------LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLL 347 (489)
Q Consensus 287 ~~~-------------------L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 347 (489)
... |...+.. ...+||+|||||.+- ....+.||
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~-~p~~VvllDeieka~---------------------------~~v~~~Ll 632 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRK-KPYTVVLFDEIEKAH---------------------------PDIFNLLL 632 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHh-CCCeEEEECChhhCC---------------------------HHHHHHHH
Confidence 222 2222221 224899999999773 23456777
Q ss_pred Hhhcccc--cCCC-----CceEEEEecCCCCC-------------------------------------CCccccCCCce
Q 011286 348 NFIDGLW--SSCG-----DERIIIFTTNHKDR-------------------------------------LDPALLRPGRM 383 (489)
Q Consensus 348 ~~ldgl~--s~~g-----~~~iiI~TTN~~~~-------------------------------------LDpALlRpGRf 383 (489)
..+|.-. ...| .+.+||+|||.... +.|.|+. |+
T Consensus 633 q~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Ri 710 (821)
T CHL00095 633 QILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RL 710 (821)
T ss_pred HHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cC
Confidence 7777421 1111 35799999995311 2245666 99
Q ss_pred eeEEEeCCCCHHHHHHHHHHhhC
Q 011286 384 DVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 384 d~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
|.+|.|.+.+.+....|+...+.
T Consensus 711 d~ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 711 DEIIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred CeEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988775
No 157
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.23 E-value=1.8e-10 Score=131.03 Aligned_cols=154 Identities=19% Similarity=0.269 Sum_probs=106.7
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCC---CCce-EEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCC
Q 011286 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA---WKRG-YLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG 286 (489)
Q Consensus 214 d~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~---~~rg-~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~ 286 (489)
..|+|+++..+.|.+.+.... .|.. .|.| +||+||||||||.+|+++|..+ ...++.+|++.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 467888888888877775432 1221 2344 7999999999999999999998 45788888877632
Q ss_pred hHH-------------------HHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHH
Q 011286 287 NKD-------------------LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLL 347 (489)
Q Consensus 287 ~~~-------------------L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 347 (489)
... |...+.. ...+||+|||||.+- ...++.|+
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEieka~---------------------------~~v~~~Ll 689 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVEKAH---------------------------PDVLELFY 689 (852)
T ss_pred hhhhccccCCCCCcccccccchHHHHHHh-CCCcEEEEechhhcC---------------------------HHHHHHHH
Confidence 222 2222322 446999999999652 23445666
Q ss_pred Hhhcccc--cCCC-----CceEEEEecCCC-----------------------------CCCCccccCCCceeeEEEeCC
Q 011286 348 NFIDGLW--SSCG-----DERIIIFTTNHK-----------------------------DRLDPALLRPGRMDVHIHMSY 391 (489)
Q Consensus 348 ~~ldgl~--s~~g-----~~~iiI~TTN~~-----------------------------~~LDpALlRpGRfd~~I~~~~ 391 (489)
+.+|.-. ...| .+.+||+|||.. ..+.|+|+. |++ .|.|.+
T Consensus 690 q~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~p 766 (852)
T TIGR03345 690 QVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLP 766 (852)
T ss_pred HHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCC
Confidence 7776432 1111 347999999941 114577777 998 789999
Q ss_pred CCHHHHHHHHHHhhC
Q 011286 392 CTPCGFKMLASNYLG 406 (489)
Q Consensus 392 p~~~~~~~l~~~~l~ 406 (489)
.+.+....|+...+.
T Consensus 767 Ls~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 767 LDDDVLAAIVRLKLD 781 (852)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988775
No 158
>PRK09087 hypothetical protein; Validated
Probab=99.22 E-value=1.9e-10 Score=111.47 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=86.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhccccc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDL 328 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~ 328 (489)
+.++||||+|+|||+|++++|+..+..++... .+. .. .+.... ..+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~~-~~----~~~~~~-~~~l~iDDi~~~~~--------------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EIG-SD----AANAAA-EGPVLIEDIDAGGF--------------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hcc-hH----HHHhhh-cCeEEEECCCCCCC---------------
Confidence 34899999999999999999998876655442 211 11 111111 25888999997521
Q ss_pred ccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHH
Q 011286 329 YRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDR---LDPALLRPGRMD--VHIHMSYCTPCGFKMLASN 403 (489)
Q Consensus 329 ~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~---LDpALlRpGRfd--~~I~~~~p~~~~~~~l~~~ 403 (489)
.+..+-.++|.+.. . +..+||.++..|.. ..|.|.. |+. ..+++..|+.+.+..++++
T Consensus 102 ----------~~~~lf~l~n~~~~---~--g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 102 ----------DETGLFHLINSVRQ---A--GTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred ----------CHHHHHHHHHHHHh---C--CCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHH
Confidence 12234455555443 1 23444444444432 3688887 774 7899999999999999999
Q ss_pred hhCcCCCCChHhHHHHH
Q 011286 404 YLGITEHPLFLEVEELI 420 (489)
Q Consensus 404 ~l~~~~~~l~~~i~~l~ 420 (489)
.+...+..+.+++...+
T Consensus 165 ~~~~~~~~l~~ev~~~L 181 (226)
T PRK09087 165 LFADRQLYVDPHVVYYL 181 (226)
T ss_pred HHHHcCCCCCHHHHHHH
Confidence 88776666656555443
No 159
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=1.2e-09 Score=111.70 Aligned_cols=146 Identities=21% Similarity=0.281 Sum_probs=104.3
Q ss_pred CcccccC-CHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC----------------
Q 011286 212 TFDTLAM-DFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF---------------- 274 (489)
Q Consensus 212 ~fd~l~~-~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~---------------- 274 (489)
.|++|.| ++.+.+.+...+. ....+..||||||+|+||+++|+++|+.+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~------------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA------------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4778888 7767776655443 1234678999999999999999999998732
Q ss_pred --------cEEEeecCcc-CChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCch
Q 011286 275 --------DVYDLELSSV-EGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRF 339 (489)
Q Consensus 275 --------~~~~l~~s~~-~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (489)
++..+....- -+.+.++.+..... ..-|++|||+|.+-
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------------------- 123 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------------------- 123 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC---------------------------
Confidence 2333322211 12356666654432 35699999999873
Q ss_pred hhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011286 340 QVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASN 403 (489)
Q Consensus 340 ~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~ 403 (489)
....+.||..|+.. ++..++|++|+.+..|-|++.+ |. .+++|++|+.++....++.
T Consensus 124 ~~a~NaLLK~LEEP----p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 124 ASAANSLLKFLEEP----SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHHHHHHHhcCC----CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 23457799999873 4567888899999999999988 76 5699999999987666654
No 160
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=4.2e-10 Score=123.18 Aligned_cols=206 Identities=20% Similarity=0.200 Sum_probs=122.4
Q ss_pred CCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEE-
Q 011286 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD- 278 (489)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~- 278 (489)
..|.. ...|.++++|+++++..+++...+.... .+....+.++|+||||||||++++++|++++..++.
T Consensus 72 ~pW~e--KyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew 141 (637)
T TIGR00602 72 EPWVE--KYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEW 141 (637)
T ss_pred CchHH--HhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHH
Confidence 46865 7889999999999988887665544211 123345569999999999999999999999876533
Q ss_pred eecCc---------------------cCChHHHHHHHHHc------------cCCeEEEEccchhhhhhhhhHHhhhhcc
Q 011286 279 LELSS---------------------VEGNKDLRQILIAT------------ENKSILVVEDIDCCLEMQDRLAKAKAAI 325 (489)
Q Consensus 279 l~~s~---------------------~~~~~~L~~l~~~~------------~~~sIL~iDdiD~~~~~~~~~~~~~~~~ 325 (489)
++... ....+.+..++..+ .++.|||||||+.++..
T Consensus 142 ~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r----------- 210 (637)
T TIGR00602 142 SNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR----------- 210 (637)
T ss_pred hhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------
Confidence 11110 01234445554432 24679999999987531
Q ss_pred cccccccccCCCchhhHHHHHHH-hhcccccCCCCceEEEEecCCCC--------------CCCccccCCCceeeEEEeC
Q 011286 326 PDLYRSACNQGNRFQVTLSGLLN-FIDGLWSSCGDERIIIFTTNHKD--------------RLDPALLRPGRMDVHIHMS 390 (489)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ls~LL~-~ldgl~s~~g~~~iiI~TTN~~~--------------~LDpALlRpGRfd~~I~~~ 390 (489)
....+..+|. .... .+.-.+|+.+|..+. .|.++++..-|+ .+|.|+
T Consensus 211 -------------~~~~lq~lLr~~~~e----~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~Fn 272 (637)
T TIGR00602 211 -------------DTRALHEILRWKYVS----IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFN 272 (637)
T ss_pred -------------hHHHHHHHHHHHhhc----CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeC
Confidence 1123334444 1111 111123333332221 134677742345 479999
Q ss_pred CCCHHHHHHHHHHhhCcCCCCChHhHHHHHhccCC-CHHHHHHHH-hcCCCHHHHHHHHHHHH
Q 011286 391 YCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEV-TPADVAEQL-MRDEVPKIALSGLIQFL 451 (489)
Q Consensus 391 ~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~-spa~i~~~l-~~~~~~~~al~~l~~~l 451 (489)
+.+..+.+..+...+..+...... ...+ ++..+..++ ...+|...||..|.-+.
T Consensus 273 Pia~t~l~K~L~rIl~~E~~~~~~-------~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 273 PIAPTIMKKFLNRIVTIEAKKNGE-------KIKVPKKTSVELLCQGCSGDIRSAINSLQFSS 328 (637)
T ss_pred CCCHHHHHHHHHHHHHhhhhcccc-------ccccCCHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 999999888888777643221111 1111 233333333 34689999999997654
No 161
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.16 E-value=3.3e-10 Score=118.49 Aligned_cols=156 Identities=20% Similarity=0.269 Sum_probs=82.4
Q ss_pred cccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-----EEEeecCc----
Q 011286 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD-----VYDLELSS---- 283 (489)
Q Consensus 213 fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~-----~~~l~~s~---- 283 (489)
++++.+.++..+.++..+. .+++++|+||||||||++|+++|+.+... +..+..+.
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 4555555555555544332 25789999999999999999999988532 11111110
Q ss_pred --c------C------ChHHHHHHHHHc----cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHH
Q 011286 284 --V------E------GNKDLRQILIAT----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSG 345 (489)
Q Consensus 284 --~------~------~~~~L~~l~~~~----~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 345 (489)
+ . ....+.+++..+ ..++|||||||+..-..+- .+....-.+...+ .......+.
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~ki-FGel~~lLE~~~r-----g~~~~v~l~- 311 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKV-FGEVMMLMEHDKR-----GENWSVPLT- 311 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHh-hhhhhhhcccccc-----ccccceeee-
Confidence 0 0 011233333333 3579999999997632110 0000000000000 000000000
Q ss_pred HHHhh--cccccCCCCceEEEEecCCCC----CCCccccCCCceeeEEEeCC-CCHHH
Q 011286 346 LLNFI--DGLWSSCGDERIIIFTTNHKD----RLDPALLRPGRMDVHIHMSY-CTPCG 396 (489)
Q Consensus 346 LL~~l--dgl~s~~g~~~iiI~TTN~~~----~LDpALlRpGRfd~~I~~~~-p~~~~ 396 (489)
...- +.+ ..+.++.||+|+|..+ .+|+||.| ||.. |++.+ .+.+.
T Consensus 312 -y~e~d~e~f--~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p~~~~~~ 363 (459)
T PRK11331 312 -YSENDEERF--YVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEPGFDTPQ 363 (459)
T ss_pred -ccccccccc--cCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEecCCCChHH
Confidence 0011 112 2246799999999887 79999999 9965 66654 34433
No 162
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=1.2e-09 Score=110.85 Aligned_cols=174 Identities=16% Similarity=0.204 Sum_probs=117.5
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-----------------
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF----------------- 274 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~----------------- 274 (489)
.|++|+|++.+++.+...+.. ...+.+|||+||+|+||+++|.++|+.+..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 589999999999988776641 233568999999999999999999998722
Q ss_pred -cEEEeecCcc-----------------------CChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhc
Q 011286 275 -DVYDLELSSV-----------------------EGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAA 324 (489)
Q Consensus 275 -~~~~l~~s~~-----------------------~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~ 324 (489)
+++.+..... -.-+.++.+.... ....|++||++|.+-
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 2233332100 0113455554332 235799999999873
Q ss_pred ccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011286 325 IPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNY 404 (489)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~ 404 (489)
....+.||..|+.. + ..++|++|+.++.|-|.+.+ |. ..|+|+.++.++....+...
T Consensus 138 ---------------~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 138 ---------------EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred ---------------HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHh
Confidence 23447788888874 2 34778888999999999998 76 56999999999998888775
Q ss_pred hCcCCCCChHhHHHHHhccCCCHHHHHHHH
Q 011286 405 LGITEHPLFLEVEELIEKVEVTPADVAEQL 434 (489)
Q Consensus 405 l~~~~~~l~~~i~~l~~~~~~spa~i~~~l 434 (489)
...... ..+...++....-+|....+.+
T Consensus 195 ~~~~~~--~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 195 GDEEIL--NINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred hccccc--hhHHHHHHHHcCCCHHHHHHHH
Confidence 432211 1123444444555555554443
No 163
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.15 E-value=2.1e-10 Score=112.18 Aligned_cols=99 Identities=20% Similarity=0.369 Sum_probs=70.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~ 283 (489)
..++.+|++.....+..+.++..+..|.... . ....+++|+||||||||+|+.|||+++ +..++.++..+
T Consensus 65 ~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 65 LHQNCSFENYRVECEGQMNALSKARQYVEEF---D----GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred cccCCccccccCCCchHHHHHHHHHHHHHhh---c----cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 3456799998876555555666666665331 1 113589999999999999999999998 67788777766
Q ss_pred cC---------ChHHHHHHHHHccCCeEEEEccchhhh
Q 011286 284 VE---------GNKDLRQILIATENKSILVVEDIDCCL 312 (489)
Q Consensus 284 ~~---------~~~~L~~l~~~~~~~sIL~iDdiD~~~ 312 (489)
+. .+....+++....+..+|+|||+++..
T Consensus 138 l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~ 175 (244)
T PRK07952 138 IMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQT 175 (244)
T ss_pred HHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCC
Confidence 52 112334566666778999999999863
No 164
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.14 E-value=1e-10 Score=108.50 Aligned_cols=109 Identities=23% Similarity=0.346 Sum_probs=76.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC----cEEEeecCccCC----hHHHHHHHHHcc------CCeEEEEccchhhh
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF----DVYDLELSSVEG----NKDLRQILIATE------NKSILVVEDIDCCL 312 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~----~~~~l~~s~~~~----~~~L~~l~~~~~------~~sIL~iDdiD~~~ 312 (489)
+...+||.||+|||||.||+++|..+.. +++.+|++.+.. ...+.+++...+ ...||||||||.+.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 3457899999999999999999999996 999999999977 555666665443 24699999999986
Q ss_pred hhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccC--CC-----CceEEEEecCCCC
Q 011286 313 EMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSS--CG-----DERIIIFTTNHKD 371 (489)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~--~g-----~~~iiI~TTN~~~ 371 (489)
....... +-....+.+.||+.||+-.-. .+ .+.|+|+|+|--.
T Consensus 82 ~~~~~~~----------------~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PSNSGGA----------------DVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTTTTCS----------------HHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccc----------------hhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 4200000 112235667888888753221 12 3579999999654
No 165
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.14 E-value=1.1e-09 Score=111.62 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=51.9
Q ss_pred CCCcc-cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-------cEEEeec
Q 011286 210 PATFD-TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-------DVYDLEL 281 (489)
Q Consensus 210 p~~fd-~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~-------~~~~l~~ 281 (489)
-.-|+ +++|.++.++++++.+..... .. ...++.++|+|||||||||||+++|+.++. ++|.+..
T Consensus 46 y~~F~~~~~G~~~~i~~lv~~l~~~a~------g~-~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 46 YRFFDHDFFGMEEAIERFVNYFKSAAQ------GL-EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccccchhccCcHHHHHHHHHHHHHHHh------cC-CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 34577 899999999998877664442 11 234578899999999999999999999977 8998877
No 166
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.5e-09 Score=110.70 Aligned_cols=123 Identities=18% Similarity=0.283 Sum_probs=93.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC------------------------cEEEeecCc---cCChHHHHHHHHHcc--
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNF------------------------DVYDLELSS---VEGNKDLRQILIATE-- 298 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~~~~l~~s~---~~~~~~L~~l~~~~~-- 298 (489)
+.+|||+||+|+||+++|.++|..+.. +++.+.... .-+-+.++++.....
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 568999999999999999999998843 455554321 124567777664432
Q ss_pred ----CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCC
Q 011286 299 ----NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLD 374 (489)
Q Consensus 299 ----~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LD 374 (489)
..-|++||++|.+- ....+.||..++.- ++..++|++|+.++.|.
T Consensus 102 ~~~~~~kv~iI~~a~~m~---------------------------~~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll 150 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMN---------------------------RNAANALLKSLEEP----SGDTVLLLISHQPSRLL 150 (328)
T ss_pred cccCCCeEEEECChhhCC---------------------------HHHHHHHHHHHhCC----CCCeEEEEEECChhhCc
Confidence 35688999999883 24557889998873 35688999999999999
Q ss_pred ccccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011286 375 PALLRPGRMDVHIHMSYCTPCGFKMLASNY 404 (489)
Q Consensus 375 pALlRpGRfd~~I~~~~p~~~~~~~l~~~~ 404 (489)
|.+++ |+. .+.|+.|+.++....+...
T Consensus 151 ~TI~S--Rc~-~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 151 PTIKS--RCQ-QQACPLPSNEESLQWLQQA 177 (328)
T ss_pred HHHHh--hce-eeeCCCcCHHHHHHHHHHh
Confidence 99998 875 4999999998877666543
No 167
>PRK08116 hypothetical protein; Validated
Probab=99.11 E-value=5.4e-10 Score=111.04 Aligned_cols=149 Identities=22% Similarity=0.332 Sum_probs=89.4
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCC-
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG- 286 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~- 286 (489)
.+|++....++... ++.....+... |... ...++|++|+||||||||+|+.|||+++ +.+++.++...+..
T Consensus 82 ~tFdnf~~~~~~~~-a~~~a~~y~~~---~~~~-~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 82 STFENFLFDKGSEK-AYKIARKYVKK---FEEM-KKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred cchhcccCChHHHH-HHHHHHHHHHH---HHhh-ccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 36777765444432 33444444432 1111 1234689999999999999999999987 77888887665310
Q ss_pred ---------hHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCC
Q 011286 287 ---------NKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSC 357 (489)
Q Consensus 287 ---------~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~ 357 (489)
......++....+..+|+|||+...-. .......|.+.+|....
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~-------------------------t~~~~~~l~~iin~r~~-- 209 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERD-------------------------TEWAREKVYNIIDSRYR-- 209 (268)
T ss_pred HHHHHhccccccHHHHHHHhcCCCEEEEecccCCCC-------------------------CHHHHHHHHHHHHHHHH--
Confidence 112234445556678999999964311 11223445555555432
Q ss_pred CCceEEEEecCCC-CC----CCccccCCCce---eeEEEeCCCCH
Q 011286 358 GDERIIIFTTNHK-DR----LDPALLRPGRM---DVHIHMSYCTP 394 (489)
Q Consensus 358 g~~~iiI~TTN~~-~~----LDpALlRpGRf---d~~I~~~~p~~ 394 (489)
.+..+|+|||.+ +. ++.++.. |+ ...|.|+-++.
T Consensus 210 -~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 210 -KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred -CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 234588889865 22 5667766 63 45577766664
No 168
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.09 E-value=4.6e-10 Score=97.57 Aligned_cols=121 Identities=28% Similarity=0.394 Sum_probs=73.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc---EEEeecCccC--------------------ChHHHHHHHHHccC--CeE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELSSVE--------------------GNKDLRQILIATEN--KSI 302 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~---~~~l~~s~~~--------------------~~~~L~~l~~~~~~--~sI 302 (489)
+..++|+||||||||++++++|..+... ++.++++... ....+..++..+.. +.|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999999875 7877776532 12333444444332 599
Q ss_pred EEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCc
Q 011286 303 LVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGR 382 (489)
Q Consensus 303 L~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGR 382 (489)
|+|||++.+........... ... ........ ......+|+++|......+..+++ |
T Consensus 82 iiiDei~~~~~~~~~~~~~~-------------~~~--------~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~-~ 137 (148)
T smart00382 82 LILDEITSLLDAEQEALLLL-------------LEE--------LRLLLLLK--SEKNLTVILTTNDEKDLGPALLRR-R 137 (148)
T ss_pred EEEECCcccCCHHHHHHHHh-------------hhh--------hHHHHHHH--hcCCCEEEEEeCCCccCchhhhhh-c
Confidence 99999998864221111000 000 00000111 113468888888733333444433 8
Q ss_pred eeeEEEeCCC
Q 011286 383 MDVHIHMSYC 392 (489)
Q Consensus 383 fd~~I~~~~p 392 (489)
++.++.++.+
T Consensus 138 ~~~~~~~~~~ 147 (148)
T smart00382 138 FDRRIVLLLI 147 (148)
T ss_pred cceEEEecCC
Confidence 8988888665
No 169
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.08 E-value=4.2e-09 Score=106.79 Aligned_cols=116 Identities=22% Similarity=0.323 Sum_probs=87.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcC------------------------CcEEEeecCccCC----hHHHHHHHHHc----
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLN------------------------FDVYDLELSSVEG----NKDLRQILIAT---- 297 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~------------------------~~~~~l~~s~~~~----~~~L~~l~~~~---- 297 (489)
.+||+||||||||++|.++|+.+. .+++.++.++... .+.++++....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~ 105 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESP 105 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCC
Confidence 799999999999999999999997 6889999888754 34455555433
Q ss_pred --cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCc
Q 011286 298 --ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDP 375 (489)
Q Consensus 298 --~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDp 375 (489)
...-|++|||+|.+.. ...+.|+..++.- .....+|++||.+..+-|
T Consensus 106 ~~~~~kviiidead~mt~---------------------------~A~nallk~lEep----~~~~~~il~~n~~~~il~ 154 (325)
T COG0470 106 LEGGYKVVIIDEADKLTE---------------------------DAANALLKTLEEP----PKNTRFILITNDPSKILP 154 (325)
T ss_pred CCCCceEEEeCcHHHHhH---------------------------HHHHHHHHHhccC----CCCeEEEEEcCChhhccc
Confidence 2357999999998843 2335566666653 356789999999999999
Q ss_pred cccCCCceeeEEEeCCCCHHHHHH
Q 011286 376 ALLRPGRMDVHIHMSYCTPCGFKM 399 (489)
Q Consensus 376 ALlRpGRfd~~I~~~~p~~~~~~~ 399 (489)
.+.+ |. ..+.|+.|+...+..
T Consensus 155 tI~S--Rc-~~i~f~~~~~~~~i~ 175 (325)
T COG0470 155 TIRS--RC-QRIRFKPPSRLEAIA 175 (325)
T ss_pred hhhh--cc-eeeecCCchHHHHHH
Confidence 8887 76 558888866555433
No 170
>PRK12377 putative replication protein; Provisional
Probab=99.05 E-value=1.1e-09 Score=107.41 Aligned_cols=94 Identities=20% Similarity=0.301 Sum_probs=62.6
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCC-
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG- 286 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~- 286 (489)
.+|++.....+..+.++..+..+...- .. ...+++|+||||||||+|+.|||+++ +..++.++..++..
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~---~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADEL---MT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHH---Hh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 367777654433334444444443321 11 23689999999999999999999998 56677776655411
Q ss_pred -------hHHHHHHHHHccCCeEEEEccchhh
Q 011286 287 -------NKDLRQILIATENKSILVVEDIDCC 311 (489)
Q Consensus 287 -------~~~L~~l~~~~~~~sIL~iDdiD~~ 311 (489)
......++....+..+|+|||+...
T Consensus 144 l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 144 LHESYDNGQSGEKFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 1123455666678899999999865
No 171
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.05 E-value=1.5e-08 Score=101.53 Aligned_cols=65 Identities=28% Similarity=0.423 Sum_probs=47.4
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC--CcEEEeecCcc
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN--FDVYDLELSSV 284 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~--~~~~~l~~s~~ 284 (489)
.-|-++|+.+.++.. --+.... +-|+-..+|+|+.||||||||.||-+||.+|| .||..++.+.+
T Consensus 37 ~~dG~VGQ~~AReAa-GvIv~mi-------k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 37 IGDGLVGQEEAREAA-GVIVKMI-------KQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred cCCcccchHHHHHhh-hHHHHHH-------HhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 456789988887754 2222222 23566689999999999999999999999996 45666655554
No 172
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.05 E-value=1.9e-09 Score=119.44 Aligned_cols=152 Identities=21% Similarity=0.251 Sum_probs=101.4
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-------------------
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------------------- 272 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l------------------- 272 (489)
+|..|+|++.+|..+.-... -+.-.|+||+||||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av-------------~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV-------------DPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhh-------------CCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 58899999988877644332 1112579999999999999999999998
Q ss_pred ----------------CCcEEEeecCcc----CChHHHHHHHHH-----------ccCCeEEEEccchhhhhhhhhHHhh
Q 011286 273 ----------------NFDVYDLELSSV----EGNKDLRQILIA-----------TENKSILVVEDIDCCLEMQDRLAKA 321 (489)
Q Consensus 273 ----------------~~~~~~l~~s~~----~~~~~L~~l~~~-----------~~~~sIL~iDdiD~~~~~~~~~~~~ 321 (489)
..+++.+.++.. -+..++.+.+.. .....|||||||+.+-
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------- 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------- 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC---------
Confidence 245555544422 122233333321 1235799999999883
Q ss_pred hhcccccccccccCCCchhhHHHHHHHhhccc---------ccCCCCceEEEEecCCC-CCCCccccCCCceeeEEEeCC
Q 011286 322 KAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL---------WSSCGDERIIIFTTNHK-DRLDPALLRPGRMDVHIHMSY 391 (489)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl---------~s~~g~~~iiI~TTN~~-~~LDpALlRpGRfd~~I~~~~ 391 (489)
..+.+.||+.|+.- .......+++|+|+|.. ..|.++|+. ||+++|.+++
T Consensus 140 ------------------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~ 199 (633)
T TIGR02442 140 ------------------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAA 199 (633)
T ss_pred ------------------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccC
Confidence 23456677777521 11111347888998854 468899999 9999999999
Q ss_pred CC-HHHHHHHHHHhh
Q 011286 392 CT-PCGFKMLASNYL 405 (489)
Q Consensus 392 p~-~~~~~~l~~~~l 405 (489)
+. .+++.+++...+
T Consensus 200 ~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 200 PRDPEERVEIIRRRL 214 (633)
T ss_pred CCchHHHHHHHHHHH
Confidence 86 466677776543
No 173
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.9e-08 Score=103.04 Aligned_cols=124 Identities=17% Similarity=0.192 Sum_probs=91.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCc-------------------------EEEeecC------------------
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFD-------------------------VYDLELS------------------ 282 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~-------------------------~~~l~~s------------------ 282 (489)
..+.+|||+||+|+||+++|.++|..+... ++.+...
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 456799999999999999999999988331 2222211
Q ss_pred -----------ccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHH
Q 011286 283 -----------SVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSG 345 (489)
Q Consensus 283 -----------~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 345 (489)
..-.-++++.+..... ..-|++||++|.+- ...-+.
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~---------------------------~~AaNa 151 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN---------------------------VAAANA 151 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC---------------------------HHHHHH
Confidence 0112355665554432 24588888888773 345588
Q ss_pred HHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011286 346 LLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASN 403 (489)
Q Consensus 346 LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~ 403 (489)
||..++. ++...++|++|++++.|.|.+++ |+ .+|.|++|+.++..+.+..
T Consensus 152 LLKtLEE----Pp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 152 LLKTLEE----PPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred HHHHhcC----CCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHH
Confidence 9999986 35678999999999999999998 87 6799999999988776655
No 174
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.02 E-value=2.3e-10 Score=99.87 Aligned_cols=105 Identities=26% Similarity=0.299 Sum_probs=60.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHH--HHH-------ccC---CeEEEEccchhhhhhhhh
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQI--LIA-------TEN---KSILVVEDIDCCLEMQDR 317 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l--~~~-------~~~---~sIL~iDdiD~~~~~~~~ 317 (489)
.+||.|+||+|||++|+++|..++.++-.+.++.--..+++.-. +.. .+. ..|+++|||...-
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap----- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP----- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC-----
Confidence 48999999999999999999999999999987643223333211 000 011 3799999999764
Q ss_pred HHhhhhcccccccccccCCCchhhHHHHHHHhhcc-------cccCCCCceEEEEecCCCC-----CCCccccCCCce
Q 011286 318 LAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG-------LWSSCGDERIIIFTTNHKD-----RLDPALLRPGRM 383 (489)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-------l~s~~g~~~iiI~TTN~~~-----~LDpALlRpGRf 383 (489)
..+.+.||..|.. ..-..++..+||+|-|..+ .|+.|++. ||
T Consensus 76 ----------------------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 76 ----------------------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ----------------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ----------------------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 3456777877743 2233445678999999876 67888887 77
No 175
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.02 E-value=1.7e-09 Score=114.02 Aligned_cols=129 Identities=18% Similarity=0.226 Sum_probs=81.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC--cEEEeecC-----ccCChHHHHHH-----HHH-----ccCCeEEEEccch
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELS-----SVEGNKDLRQI-----LIA-----TENKSILVVEDID 309 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~--~~~~l~~s-----~~~~~~~L~~l-----~~~-----~~~~sIL~iDdiD 309 (489)
....+||+||||||||++|+++|...+. ++..+.+. ++-+...+... |.. .+...|||+|||.
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ 117 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIW 117 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccc
Confidence 4568999999999999999999998753 23322221 11111111111 111 1123499999998
Q ss_pred hhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhc-ccccCCC-----CceEEEEecCCCC---CCCccccCC
Q 011286 310 CCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFID-GLWSSCG-----DERIIIFTTNHKD---RLDPALLRP 380 (489)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld-gl~s~~g-----~~~iiI~TTN~~~---~LDpALlRp 380 (489)
.+. ..+.+.||..|. +.....+ ..+++|+|||... ...+|+..
T Consensus 118 ras---------------------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D- 169 (498)
T PRK13531 118 KAG---------------------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD- 169 (498)
T ss_pred cCC---------------------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh-
Confidence 652 456678888883 2222111 2357788888432 23358998
Q ss_pred CceeeEEEeCCCC-HHHHHHHHHHh
Q 011286 381 GRMDVHIHMSYCT-PCGFKMLASNY 404 (489)
Q Consensus 381 GRfd~~I~~~~p~-~~~~~~l~~~~ 404 (489)
||-+.|.+|+|+ .+.+..|+...
T Consensus 170 -RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 170 -RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred -hEEEEEECCCCCchHHHHHHHHcc
Confidence 999999999997 56677787653
No 176
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.01 E-value=9.5e-09 Score=94.50 Aligned_cols=113 Identities=19% Similarity=0.300 Sum_probs=81.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc-----------------------CCcEEEeecCcc---CChHHHHHHHHHcc-
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYL-----------------------NFDVYDLELSSV---EGNKDLRQILIATE- 298 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l-----------------------~~~~~~l~~s~~---~~~~~L~~l~~~~~- 298 (489)
..+..|||+||+|+||+++|.++|+.+ ..+++.++.... -..+.++.+.....
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~ 96 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSL 96 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTS
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHH
Confidence 345689999999999999999999887 134566655543 24577777776552
Q ss_pred -----CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCC
Q 011286 299 -----NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRL 373 (489)
Q Consensus 299 -----~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~L 373 (489)
..-|++|||+|.+- ....+.||..|+.- ++..++|++|+.++.|
T Consensus 97 ~~~~~~~KviiI~~ad~l~---------------------------~~a~NaLLK~LEep----p~~~~fiL~t~~~~~i 145 (162)
T PF13177_consen 97 SPSEGKYKVIIIDEADKLT---------------------------EEAQNALLKTLEEP----PENTYFILITNNPSKI 145 (162)
T ss_dssp S-TTSSSEEEEEETGGGS----------------------------HHHHHHHHHHHHST----TTTEEEEEEES-GGGS
T ss_pred HHhcCCceEEEeehHhhhh---------------------------HHHHHHHHHHhcCC----CCCEEEEEEECChHHC
Confidence 35799999999883 34568899999984 4678999999999999
Q ss_pred CccccCCCceeeEEEeCCC
Q 011286 374 DPALLRPGRMDVHIHMSYC 392 (489)
Q Consensus 374 DpALlRpGRfd~~I~~~~p 392 (489)
-|.+++ |. ..+.|+..
T Consensus 146 l~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 146 LPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp -HHHHT--TS-EEEEE---
T ss_pred hHHHHh--hc-eEEecCCC
Confidence 999998 76 55777654
No 177
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.01 E-value=1.2e-08 Score=105.86 Aligned_cols=191 Identities=15% Similarity=0.163 Sum_probs=117.9
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----CcEEEeec
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----FDVYDLEL 281 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-----~~~~~l~~ 281 (489)
..+.-|||+++..+.-.... ..... +-..-|. ...-++||||+|.|||+|.+|++++.. ..++.+..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~-aa~~~------va~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAY-AAAKA------VAENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred CCCCCchhheeeCCchHHHH-HHHHH------HHhccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence 34445899988665543332 11111 1122222 345689999999999999999999883 23444433
Q ss_pred CccC-------ChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccc
Q 011286 282 SSVE-------GNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLW 354 (489)
Q Consensus 282 s~~~-------~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~ 354 (489)
.... -+..+.++=... +-.+|+||||+.+.+ ....+..+-.++|.+-..
T Consensus 152 e~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~g----------------------k~~~qeefFh~FN~l~~~- 207 (408)
T COG0593 152 EDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAG----------------------KERTQEEFFHTFNALLEN- 207 (408)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcC----------------------ChhHHHHHHHHHHHHHhc-
Confidence 2220 001111111122 456999999999864 222345555566665442
Q ss_pred cCCCCceEEEEecCCCCC---CCccccCCCce--eeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHh-ccCCCHH
Q 011286 355 SSCGDERIIIFTTNHKDR---LDPALLRPGRM--DVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE-KVEVTPA 428 (489)
Q Consensus 355 s~~g~~~iiI~TTN~~~~---LDpALlRpGRf--d~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~spa 428 (489)
++.||+.+-..|.. ++|.|.+ || ...+++.+|+.+.+..+++......+..+.+++...+. ...-+..
T Consensus 208 ----~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvR 281 (408)
T COG0593 208 ----GKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVR 281 (408)
T ss_pred ----CCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHH
Confidence 22444444445554 4588887 65 57889999999999999999888888888887776554 4456666
Q ss_pred HHHHHHh
Q 011286 429 DVAEQLM 435 (489)
Q Consensus 429 ~i~~~l~ 435 (489)
++.+.+.
T Consensus 282 eLegaL~ 288 (408)
T COG0593 282 ELEGALN 288 (408)
T ss_pred HHHHHHH
Confidence 6666553
No 178
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.00 E-value=1.7e-09 Score=109.41 Aligned_cols=97 Identities=25% Similarity=0.339 Sum_probs=68.0
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc--
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV-- 284 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~-- 284 (489)
..+|+++.....-+..+......|+... .. | +..+|++||||||||||+|+.|||+++ |..+..+....+
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~---~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAY---PP-G-EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHh---hc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 3577777765545555555555555432 11 1 346799999999999999999999998 777777766554
Q ss_pred -----CChHHHHHHHHHccCCeEEEEccchhh
Q 011286 285 -----EGNKDLRQILIATENKSILVVEDIDCC 311 (489)
Q Consensus 285 -----~~~~~L~~l~~~~~~~sIL~iDdiD~~ 311 (489)
.....+.+.+....+..+|+||||...
T Consensus 198 ~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 112234566667778899999999864
No 179
>PRK04132 replication factor C small subunit; Provisional
Probab=98.99 E-value=6.2e-09 Score=116.95 Aligned_cols=125 Identities=12% Similarity=0.118 Sum_probs=99.1
Q ss_pred EEEEC--CCCCcHHHHHHHHHHHc-----CCcEEEeecCccCChHHHHHHHHHcc--------CCeEEEEccchhhhhhh
Q 011286 251 YLLYG--PPGTGKSSLIAAMANYL-----NFDVYDLELSSVEGNKDLRQILIATE--------NKSILVVEDIDCCLEMQ 315 (489)
Q Consensus 251 ~LL~G--PpGtGKTsla~aiA~~l-----~~~~~~l~~s~~~~~~~L~~l~~~~~--------~~sIL~iDdiD~~~~~~ 315 (489)
.+..| |++.||||+|.|+|+++ +.+++.+|.++..+.+.+++++.... +..|++|||+|.+-.
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~-- 644 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-- 644 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH--
Confidence 45668 99999999999999998 66899999999777788887775421 136999999998832
Q ss_pred hhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHH
Q 011286 316 DRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPC 395 (489)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~ 395 (489)
...+.|+..|+.. .....+|++||.+..+.|++.+ |+ ..+.|+.++.+
T Consensus 645 -------------------------~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~ 692 (846)
T PRK04132 645 -------------------------DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDE 692 (846)
T ss_pred -------------------------HHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHH
Confidence 2346688888863 2457899999999999999998 76 67999999999
Q ss_pred HHHHHHHHhhCcCC
Q 011286 396 GFKMLASNYLGITE 409 (489)
Q Consensus 396 ~~~~l~~~~l~~~~ 409 (489)
+....++..+..++
T Consensus 693 ~i~~~L~~I~~~Eg 706 (846)
T PRK04132 693 DIAKRLRYIAENEG 706 (846)
T ss_pred HHHHHHHHHHHhcC
Confidence 88877776655443
No 180
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.99 E-value=2e-09 Score=101.85 Aligned_cols=140 Identities=20% Similarity=0.306 Sum_probs=65.6
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEE--EeecCcc-----
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVY--DLELSSV----- 284 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~--~l~~s~~----- 284 (489)
.|++|+|++..|+.+.-... | ..++||+||||||||++|+++...+.---. .++.+.+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 38899999999998854332 3 358999999999999999999988721000 0111111
Q ss_pred ----------------CChHHHHHHHHH----------ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCc
Q 011286 285 ----------------EGNKDLRQILIA----------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR 338 (489)
Q Consensus 285 ----------------~~~~~L~~l~~~----------~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (489)
.-......++.. .....|||+||+-.+
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef--------------------------- 118 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEF--------------------------- 118 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS---------------------------
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc---------------------------
Confidence 111222333321 124689999999866
Q ss_pred hhhHHHHHHHhhcccc---------cCCCCceEEEEecCC-----------------------CCCCCccccCCCceeeE
Q 011286 339 FQVTLSGLLNFIDGLW---------SSCGDERIIIFTTNH-----------------------KDRLDPALLRPGRMDVH 386 (489)
Q Consensus 339 ~~~~ls~LL~~ldgl~---------s~~g~~~iiI~TTN~-----------------------~~~LDpALlRpGRfd~~ 386 (489)
...++..|+..++.-. -.-.-+.++|+|+|. ..+|.-.|+. |||.+
T Consensus 119 ~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~ 196 (206)
T PF01078_consen 119 DRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIH 196 (206)
T ss_dssp -HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S----------------------------------------
T ss_pred CHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--ccccc
Confidence 2456677777775310 001123588888883 2456666777 88888
Q ss_pred EEeCCCCHH
Q 011286 387 IHMSYCTPC 395 (489)
Q Consensus 387 I~~~~p~~~ 395 (489)
|.++..+.+
T Consensus 197 v~~~~~~~~ 205 (206)
T PF01078_consen 197 VEVPRVSYE 205 (206)
T ss_dssp ---------
T ss_pred ccccccccC
Confidence 888876654
No 181
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.98 E-value=1.3e-08 Score=103.17 Aligned_cols=72 Identities=19% Similarity=0.158 Sum_probs=44.7
Q ss_pred hHHHHHHHhhcccccCCCCceEEEEecCC------------CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC
Q 011286 341 VTLSGLLNFIDGLWSSCGDERIIIFTTNH------------KDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT 408 (489)
Q Consensus 341 ~~ls~LL~~ldgl~s~~g~~~iiI~TTN~------------~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~ 408 (489)
..++-|-..|+.-.+ -+||++||+ |..++..|+. |+ ..|...+++.++.+++++.-+..+
T Consensus 293 EcFsfLnralEs~~s-----PiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl-lII~t~py~~~ei~~Il~iR~~~E 364 (398)
T PF06068_consen 293 ECFSFLNRALESELS-----PIIILATNRGITKIRGTDIISPHGIPLDLLD--RL-LIIRTKPYSEEEIKQILKIRAKEE 364 (398)
T ss_dssp HHHHHHHHHHTSTT-------EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-EEEEE----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCC-----cEEEEecCceeeeccCccCcCCCCCCcchHh--hc-EEEECCCCCHHHHHHHHHhhhhhh
Confidence 445555556665332 488999995 4667888998 87 779999999999999999988888
Q ss_pred CCCChHhHHHHH
Q 011286 409 EHPLFLEVEELI 420 (489)
Q Consensus 409 ~~~l~~~i~~l~ 420 (489)
+..+.++.-.++
T Consensus 365 ~v~i~~~al~~L 376 (398)
T PF06068_consen 365 DVEISEDALDLL 376 (398)
T ss_dssp T--B-HHHHHHH
T ss_pred cCcCCHHHHHHH
Confidence 888766554443
No 182
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.97 E-value=5e-09 Score=113.31 Aligned_cols=127 Identities=16% Similarity=0.222 Sum_probs=83.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEe----ecCccCChHHHHHH----------HHHccCCeEEEEccchhhhhhh
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL----ELSSVEGNKDLRQI----------LIATENKSILVVEDIDCCLEMQ 315 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l----~~s~~~~~~~L~~l----------~~~~~~~sIL~iDdiD~~~~~~ 315 (489)
.+||+|+||||||++++++++......+.. ++..+.. ..++.- ........+++|||+|.+-.
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~-- 314 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-AVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD-- 314 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-cceEccCcceEEecCccEEecCCCEEEEechhhCCH--
Confidence 599999999999999999999886554433 2111210 111110 01123468999999998732
Q ss_pred hhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc---------cccCCCCceEEEEecCCCC-------------CC
Q 011286 316 DRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG---------LWSSCGDERIIIFTTNHKD-------------RL 373 (489)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------l~s~~g~~~iiI~TTN~~~-------------~L 373 (489)
.+.+.|+..|+. ....-.....||+|+|..+ .|
T Consensus 315 -------------------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l 369 (509)
T smart00350 315 -------------------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDL 369 (509)
T ss_pred -------------------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCC
Confidence 223445555532 2111123467899999653 58
Q ss_pred CccccCCCceeeEEEe-CCCCHHHHHHHHHHhhC
Q 011286 374 DPALLRPGRMDVHIHM-SYCTPCGFKMLASNYLG 406 (489)
Q Consensus 374 DpALlRpGRfd~~I~~-~~p~~~~~~~l~~~~l~ 406 (489)
+|+++. |||....+ .+|+.+....|+++.+.
T Consensus 370 ~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 370 PAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred ChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 999999 99986555 88999999999887654
No 183
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.95 E-value=5.1e-09 Score=99.32 Aligned_cols=192 Identities=17% Similarity=0.223 Sum_probs=114.8
Q ss_pred CceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-C----Cc
Q 011286 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-N----FD 275 (489)
Q Consensus 201 ~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~----~~ 275 (489)
.|.+ .+.|..+++++|+++.-+++. . +.+-|-- .++++.||||||||+-+.++|+++ | --
T Consensus 16 ~wVe--KYrP~~l~dIVGNe~tv~rl~----v-------ia~~gnm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~ 80 (333)
T KOG0991|consen 16 PWVE--KYRPSVLQDIVGNEDTVERLS----V-------IAKEGNM--PNLIISGPPGTGKTTSILCLARELLGDSYKEA 80 (333)
T ss_pred hHHH--hhCchHHHHhhCCHHHHHHHH----H-------HHHcCCC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhH
Confidence 3654 789999999999987766552 2 2222322 369999999999999999999998 2 34
Q ss_pred EEEeecCccCChHHHH---HHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHH
Q 011286 276 VYDLELSSVEGNKDLR---QILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGL 346 (489)
Q Consensus 276 ~~~l~~s~~~~~~~L~---~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 346 (489)
+..++.|+-.+-+-++ +.|.+.+ +.-||++||+|++... .+.. |
T Consensus 81 vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g------------------------AQQA---l 133 (333)
T KOG0991|consen 81 VLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG------------------------AQQA---L 133 (333)
T ss_pred hhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH------------------------HHHH---H
Confidence 6678888766555554 4444432 2469999999988430 1111 2
Q ss_pred HHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhccCCC
Q 011286 347 LNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEVT 426 (489)
Q Consensus 347 L~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~s 426 (489)
-..|+-..++ .-+.+++|..+++=+.+-. |+- .+.+...+..+...-+...... +.+.+|
T Consensus 134 RRtMEiyS~t----tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~-------------Ekv~yt 193 (333)
T KOG0991|consen 134 RRTMEIYSNT----TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKA-------------EKVNYT 193 (333)
T ss_pred HHHHHHHccc----chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHH-------------hCCCCC
Confidence 2223322222 2367788888777655554 443 3555666666543322222222 234455
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Q 011286 427 PADVAEQLM-RDEVPKIALSGLIQFLQIK 454 (489)
Q Consensus 427 pa~i~~~l~-~~~~~~~al~~l~~~l~~~ 454 (489)
+.-+...+. ..+|-..||.+|......-
T Consensus 194 ~dgLeaiifta~GDMRQalNnLQst~~g~ 222 (333)
T KOG0991|consen 194 DDGLEAIIFTAQGDMRQALNNLQSTVNGF 222 (333)
T ss_pred cchHHHhhhhccchHHHHHHHHHHHhccc
Confidence 544444443 3466677777766665543
No 184
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.6e-08 Score=99.98 Aligned_cols=66 Identities=27% Similarity=0.429 Sum_probs=55.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC--------ChHHHHHHHHHc------cCCeEEEEccchhhhh
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE--------GNKDLRQILIAT------ENKSILVVEDIDCCLE 313 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~--------~~~~L~~l~~~~------~~~sIL~iDdiD~~~~ 313 (489)
+.++||.||.|||||.||+.+|..++.||..-|.+.+. -+.-|.+++..+ ..+.||+|||||.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 56799999999999999999999999999999998872 134456666554 3589999999999964
No 185
>PRK08181 transposase; Validated
Probab=98.94 E-value=5.8e-09 Score=103.49 Aligned_cols=65 Identities=26% Similarity=0.444 Sum_probs=49.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC-------ChHHHHHHHHHccCCeEEEEccchhhh
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE-------GNKDLRQILIATENKSILVVEDIDCCL 312 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~-------~~~~L~~l~~~~~~~sIL~iDdiD~~~ 312 (489)
+.+++|+||||||||+|+.|+|+++ |+.++.++..++. .+..+.+.+....+..+|+|||++...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEecccccc
Confidence 5689999999999999999999865 6777777665541 123344566666788999999999763
No 186
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.93 E-value=2.3e-08 Score=107.69 Aligned_cols=209 Identities=21% Similarity=0.281 Sum_probs=123.1
Q ss_pred CCCCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 011286 198 DTEIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (489)
Q Consensus 198 ~~~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~ 277 (489)
....|.. ...|.+.++|+..+...++|...+...+ .|....+-+||+||||||||++++++|+++++.+.
T Consensus 5 ~~~~W~~--ky~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 5 ESEPWVE--KYAPKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred ccCccch--hcCCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 4457876 7889999999999877777766665432 23445667889999999999999999999999887
Q ss_pred Ee-ecCcc----------CC-----------hHHHHHH-HHH-------------ccCCeEEEEccchhhhhhhhhHHhh
Q 011286 278 DL-ELSSV----------EG-----------NKDLRQI-LIA-------------TENKSILVVEDIDCCLEMQDRLAKA 321 (489)
Q Consensus 278 ~l-~~s~~----------~~-----------~~~L~~l-~~~-------------~~~~sIL~iDdiD~~~~~~~~~~~~ 321 (489)
.- +...+ .+ ...+..+ +.. ..++.||+|||+-..+.
T Consensus 75 Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~-------- 146 (519)
T PF03215_consen 75 EWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH-------- 146 (519)
T ss_pred EecCCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc--------
Confidence 53 22221 00 0112222 111 12467999999986653
Q ss_pred hhcccccccccccCCCchhhHHHHHHHhhcccccCCCC-ceEEEEe-c------CCCC--------CCCccccCCCceee
Q 011286 322 KAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD-ERIIIFT-T------NHKD--------RLDPALLRPGRMDV 385 (489)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~-~~iiI~T-T------N~~~--------~LDpALlRpGRfd~ 385 (489)
......-..|...+.. .+. .+|||.| + |... .+++.++.-.++ .
T Consensus 147 ---------------~~~~~f~~~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~ 206 (519)
T PF03215_consen 147 ---------------RDTSRFREALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-T 206 (519)
T ss_pred ---------------hhHHHHHHHHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-e
Confidence 1111222223333332 122 5777777 1 1111 356666643345 4
Q ss_pred EEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhccCC--CHHHHHHHH-hc-CCCHHHHHHHHHHHHH
Q 011286 386 HIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEV--TPADVAEQL-MR-DEVPKIALSGLIQFLQ 452 (489)
Q Consensus 386 ~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~--spa~i~~~l-~~-~~~~~~al~~l~~~l~ 452 (489)
+|.|.+......+..+++.+..+ .. ....... .+.++.+.+ .. +||-..||..|.=+..
T Consensus 207 ~I~FNpIa~T~mkKaL~rI~~~E-------~~-~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 207 RIKFNPIAPTFMKKALKRILKKE-------AR-SSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred EEEecCCCHHHHHHHHHHHHHHH-------hh-hhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 69999999888777776655432 00 1111111 223333333 32 4888899988876655
No 187
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=8.7e-09 Score=107.41 Aligned_cols=136 Identities=24% Similarity=0.305 Sum_probs=97.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEe-ecCcc------CChHHHHHHHHHccC--CeEEEEccchhhhhhhhhH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL-ELSSV------EGNKDLRQILIATEN--KSILVVEDIDCCLEMQDRL 318 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l-~~s~~------~~~~~L~~l~~~~~~--~sIL~iDdiD~~~~~~~~~ 318 (489)
-..+||+||||+|||+||+.+|...++|++.+ +..++ .....+++.|..+.+ -+||++|||+.+++-..-
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI- 616 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI- 616 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc-
Confidence 35799999999999999999999999999976 22222 234567888877743 599999999999752211
Q ss_pred HhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCc-cccCCCceeeEEEeCCCCH-HH
Q 011286 319 AKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDP-ALLRPGRMDVHIHMSYCTP-CG 396 (489)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDp-ALlRpGRfd~~I~~~~p~~-~~ 396 (489)
++..+..++..|+..+.... ..|...+|++||...+-|.. .++. .|+..|++|..+. ++
T Consensus 617 ----------------GPRfSN~vlQaL~VllK~~p-pkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 617 ----------------GPRFSNLVLQALLVLLKKQP-PKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQ 677 (744)
T ss_pred ----------------CchhhHHHHHHHHHHhccCC-CCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHH
Confidence 13456677777888777653 33556677778877666543 4555 8899999999876 55
Q ss_pred HHHHHHH
Q 011286 397 FKMLASN 403 (489)
Q Consensus 397 ~~~l~~~ 403 (489)
...++..
T Consensus 678 ~~~vl~~ 684 (744)
T KOG0741|consen 678 LLEVLEE 684 (744)
T ss_pred HHHHHHH
Confidence 5555543
No 188
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=1.7e-07 Score=95.20 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=93.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC-----------------------CcEEEeecCc---cCChHHHHHHHHHc--
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN-----------------------FDVYDLELSS---VEGNKDLRQILIAT-- 297 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~-----------------------~~~~~l~~s~---~~~~~~L~~l~~~~-- 297 (489)
..+.+|||+||.|+||+++|.++|..+. -+++.+.... .-+.+.++.+....
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 3456899999999999999999999872 2455554421 12345666654332
Q ss_pred -c---CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCC
Q 011286 298 -E---NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRL 373 (489)
Q Consensus 298 -~---~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~L 373 (489)
+ ..-|++||++|.+- ...-+.||..++. ++.+.++|++|++++.|
T Consensus 103 ~~~~~~~kV~iI~~ae~m~---------------------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~l 151 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMN---------------------------ESASNALLKTLEE----PAPNCLFLLVTHNQKRL 151 (319)
T ss_pred CcccCCceEEEecchhhhC---------------------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhC
Confidence 1 24699999999883 3455789999987 35678999999999999
Q ss_pred CccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011286 374 DPALLRPGRMDVHIHMSYCTPCGFKMLASN 403 (489)
Q Consensus 374 DpALlRpGRfd~~I~~~~p~~~~~~~l~~~ 403 (489)
-|.+++ |. .++.|+.|+.++..+.+..
T Consensus 152 LpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 152 LPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred hHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 999998 77 4699999999987766654
No 189
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.86 E-value=4.7e-08 Score=107.33 Aligned_cols=128 Identities=20% Similarity=0.209 Sum_probs=88.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCC--cEEEeecCcc----CChHHHHHHHH-----------HccCCeEEEEccchhh
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELSSV----EGNKDLRQILI-----------ATENKSILVVEDIDCC 311 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~--~~~~l~~s~~----~~~~~L~~l~~-----------~~~~~sIL~iDdiD~~ 311 (489)
.++||.|+||||||+++++++..+.. ++..+.++.. -+.-.+...+. ...+..|||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 57999999999999999999998864 4776664221 11112222111 1133579999999988
Q ss_pred hhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc---------cccCCCCceEEEEecCCCC---CCCccccC
Q 011286 312 LEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG---------LWSSCGDERIIIFTTNHKD---RLDPALLR 379 (489)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------l~s~~g~~~iiI~TTN~~~---~LDpALlR 379 (489)
- ..+.+.|++.|+. ..........||+|+|..+ .|.++|+.
T Consensus 97 ~---------------------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld 149 (589)
T TIGR02031 97 D---------------------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD 149 (589)
T ss_pred C---------------------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH
Confidence 3 2445667777753 1111123467889999765 78999999
Q ss_pred CCceeeEEEeCCC-CHHHHHHHHHHhh
Q 011286 380 PGRMDVHIHMSYC-TPCGFKMLASNYL 405 (489)
Q Consensus 380 pGRfd~~I~~~~p-~~~~~~~l~~~~l 405 (489)
||+++|.+.++ ..+++.+|++.++
T Consensus 150 --Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 150 --RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred --hccCeeecCCCCCHHHHHHHHHHHH
Confidence 99999999876 5566888888766
No 190
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.85 E-value=3.7e-08 Score=100.77 Aligned_cols=154 Identities=15% Similarity=0.182 Sum_probs=101.9
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCChH
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNK 288 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~~ 288 (489)
-|++++|....-+.+++.+..... ....+||+|++||||+++|++|.... +.+++.+||..+.. .
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~-----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-N 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-H
Confidence 467888888888888887775542 24579999999999999999998765 46899999998753 3
Q ss_pred HHHHHH-H-----------------HccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhh
Q 011286 289 DLRQIL-I-----------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFI 350 (489)
Q Consensus 289 ~L~~l~-~-----------------~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 350 (489)
.+...+ . .......|||||||.+.. .....|++.+
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~---------------------------~~Q~~L~~~l 124 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM---------------------------LVQEKLLRVI 124 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH---------------------------HHHHHHHHHH
Confidence 333322 1 223467899999999842 2223455555
Q ss_pred cccc-cCCC------CceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHhhC
Q 011286 351 DGLW-SSCG------DERIIIFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCTP--CGFKMLASNYLG 406 (489)
Q Consensus 351 dgl~-s~~g------~~~iiI~TTN~~-------~~LDpALlRpGRf-d~~I~~~~p~~--~~~~~l~~~~l~ 406 (489)
+.-. ...| -.+-||+||+.. ..+.+.|.. |+ ..+|++|+... +.+..|+..|+.
T Consensus 125 ~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~ 195 (326)
T PRK11608 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAI 195 (326)
T ss_pred hcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHH
Confidence 4311 1111 135677777753 355667776 77 55788887764 446667777663
No 191
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=8.8e-08 Score=97.45 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=92.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC------------------------cEEEeecC--ccCChHHHHHHHHHcc--
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF------------------------DVYDLELS--SVEGNKDLRQILIATE-- 298 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~~~~l~~s--~~~~~~~L~~l~~~~~-- 298 (489)
.+.+|||+||+|+||+++|.++|..+.. +++.+... .--+.+.++++.....
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 3568999999999999999999998832 23444321 1124566776654432
Q ss_pred ----CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCC
Q 011286 299 ----NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLD 374 (489)
Q Consensus 299 ----~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LD 374 (489)
..-|++||++|.+- ....+.||..|+. ++...++|++|++++.|.
T Consensus 103 ~~~g~~KV~iI~~a~~m~---------------------------~~AaNaLLKtLEE----Pp~~~~fiL~t~~~~~ll 151 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLT---------------------------EAAANALLKTLEE----PRPNTYFLLQADLSAALL 151 (325)
T ss_pred cccCCceEEEEechhhhC---------------------------HHHHHHHHHHhcC----CCCCeEEEEEECChHhCc
Confidence 34699999999883 3455789999987 356789999999999999
Q ss_pred ccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011286 375 PALLRPGRMDVHIHMSYCTPCGFKMLASN 403 (489)
Q Consensus 375 pALlRpGRfd~~I~~~~p~~~~~~~l~~~ 403 (489)
|.+++ |. .++.|++|+.++..+.+..
T Consensus 152 pTI~S--RC-~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 152 PTIYS--RC-QTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred hHHHh--hc-eEEeCCCCCHHHHHHHHHH
Confidence 99987 76 5689999999887766654
No 192
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.85 E-value=5.2e-08 Score=106.19 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=102.6
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCC
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG 286 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~ 286 (489)
..+|+.++|....-+.+++.+..... ....+||+|++||||+++|++|.... +.+++.+||..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 35799999998888888887775542 24579999999999999999999885 56999999998843
Q ss_pred hHHHHHHH-H-----------------HccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHH
Q 011286 287 NKDLRQIL-I-----------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLN 348 (489)
Q Consensus 287 ~~~L~~l~-~-----------------~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 348 (489)
..+...+ . ...++.+|||||||.+-. .....|+.
T Consensus 261 -~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~---------------------------~~Q~~Ll~ 312 (534)
T TIGR01817 261 -TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP---------------------------AFQAKLLR 312 (534)
T ss_pred -HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH---------------------------HHHHHHHH
Confidence 3333322 1 123467999999998832 12234555
Q ss_pred hhccc-ccCCCC------ceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCC--HHHHHHHHHHhhC
Q 011286 349 FIDGL-WSSCGD------ERIIIFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCT--PCGFKMLASNYLG 406 (489)
Q Consensus 349 ~ldgl-~s~~g~------~~iiI~TTN~~-------~~LDpALlRpGRf-d~~I~~~~p~--~~~~~~l~~~~l~ 406 (489)
.++.- ....|+ .+-+|+|||.. ..+.+.|.. |+ ...|.+|+.. .+....|+..|+.
T Consensus 313 ~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~ 385 (534)
T TIGR01817 313 VLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLE 385 (534)
T ss_pred HHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHH
Confidence 55431 111111 25677777653 233344443 44 3468888776 4566777777764
No 193
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.84 E-value=3.8e-08 Score=91.03 Aligned_cols=85 Identities=18% Similarity=0.147 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCChHHHHHH
Q 011286 217 AMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLRQI 293 (489)
Q Consensus 217 ~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~~~L~~l 293 (489)
+|....-+++++.+.... ..+..+||+|++||||+.+|++|-+.. +.|++.++|+.+..+.--..+
T Consensus 2 iG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp S--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 455555556666555443 335789999999999999999999876 468999999998544333445
Q ss_pred HHH-----------------ccCCeEEEEccchhhh
Q 011286 294 LIA-----------------TENKSILVVEDIDCCL 312 (489)
Q Consensus 294 ~~~-----------------~~~~sIL~iDdiD~~~ 312 (489)
|.. ..+..+||||||+.+.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~ 106 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLP 106 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-
T ss_pred hccccccccccccccCCceeeccceEEeecchhhhH
Confidence 522 1246899999999984
No 194
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.83 E-value=6.8e-08 Score=107.54 Aligned_cols=91 Identities=19% Similarity=0.140 Sum_probs=67.6
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCCh
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGN 287 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~ 287 (489)
.+|++++|....-+++++.+..... ....+||+|++||||+++|++|.+.. +.+++.+||..+..+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAK-----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 3688888887777777776665442 23569999999999999999999876 469999999998542
Q ss_pred HHHHHHHHH--------------ccCCeEEEEccchhhh
Q 011286 288 KDLRQILIA--------------TENKSILVVEDIDCCL 312 (489)
Q Consensus 288 ~~L~~l~~~--------------~~~~sIL~iDdiD~~~ 312 (489)
.--..+|.. ......||||||+.+-
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~ 429 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLS 429 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCC
Confidence 222344431 2346799999999883
No 195
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=2.5e-07 Score=93.94 Aligned_cols=124 Identities=16% Similarity=0.206 Sum_probs=89.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCC---------------------cEEEee--cCcc-------CChHHHHHHHH
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNF---------------------DVYDLE--LSSV-------EGNKDLRQILI 295 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~---------------------~~~~l~--~s~~-------~~~~~L~~l~~ 295 (489)
..+.+|||+||+|+||+++|.++|..+.. +++.++ ...- -.-+.++++..
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 34568999999999999999999987721 234442 1110 12445565554
Q ss_pred Hcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCC
Q 011286 296 ATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNH 369 (489)
Q Consensus 296 ~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~ 369 (489)
... ..-|++||++|.+. ....+.||..|+.- +...++|++|+.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~---------------------------~~AaNaLLKtLEEP----p~~~~fiL~~~~ 152 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN---------------------------RAACNALLKTLEEP----SPGRYLWLISAQ 152 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC---------------------------HHHHHHHHHHhhCC----CCCCeEEEEECC
Confidence 332 24699999999883 24457889988873 456889999999
Q ss_pred CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011286 370 KDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASN 403 (489)
Q Consensus 370 ~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~ 403 (489)
++.|-|.+.+ |+ .+|.|+.|+.++....+..
T Consensus 153 ~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 153 PARLPATIRS--RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred hhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHH
Confidence 9999999998 87 5689999999886665543
No 196
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.82 E-value=2.1e-09 Score=100.45 Aligned_cols=64 Identities=28% Similarity=0.541 Sum_probs=48.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc-------CChHHHHHHHHHccCCeEEEEccchhh
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV-------EGNKDLRQILIATENKSILVVEDIDCC 311 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~-------~~~~~L~~l~~~~~~~sIL~iDdiD~~ 311 (489)
+.|++|+||||||||+||.|||+++ |..++.++..++ .......+++....+..+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEeccccccee
Confidence 5799999999999999999999877 888888877765 122334556667777899999999754
No 197
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=1.3e-07 Score=96.84 Aligned_cols=123 Identities=17% Similarity=0.180 Sum_probs=92.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC------------------------cEEEeecCc---cCChHHHHHHHHHcc-
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF------------------------DVYDLELSS---VEGNKDLRQILIATE- 298 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~------------------------~~~~l~~s~---~~~~~~L~~l~~~~~- 298 (489)
.+-+|||+||+|+||+++|.++|..+-. +++.+.... .-+.+.++.+.....
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 3568999999999999999999998822 344443321 123556666654432
Q ss_pred -----CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCC
Q 011286 299 -----NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRL 373 (489)
Q Consensus 299 -----~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~L 373 (489)
..-|++||++|.+- ...-+.||..|+. +++..++|.+|++++.|
T Consensus 103 ~~~~g~~kV~iI~~ae~m~---------------------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~l 151 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLT---------------------------DAAANALLKTLEE----PPENTWFFLACREPARL 151 (334)
T ss_pred ccccCCceEEEEcchHhhC---------------------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhC
Confidence 35699999999883 2445789999987 35678999999999999
Q ss_pred CccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011286 374 DPALLRPGRMDVHIHMSYCTPCGFKMLASN 403 (489)
Q Consensus 374 DpALlRpGRfd~~I~~~~p~~~~~~~l~~~ 403 (489)
-|.+++ |.. .+.|+.|+.++....+..
T Consensus 152 LpTIrS--RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 152 LATLRS--RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred hHHHHh--ccc-cccCCCCCHHHHHHHHHH
Confidence 999998 875 589999999887765543
No 198
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.80 E-value=2.7e-08 Score=101.48 Aligned_cols=64 Identities=25% Similarity=0.376 Sum_probs=47.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC---------ChHHHHHHHHHccCCeEEEEccchhh
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE---------GNKDLRQILIATENKSILVVEDIDCC 311 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~---------~~~~L~~l~~~~~~~sIL~iDdiD~~ 311 (489)
..+++||||||||||+|+.|||+++ +..++.++...+. ........+....+..+|+|||+...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTE 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCC
Confidence 3789999999999999999999997 7777777765541 11122222455566789999999865
No 199
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.80 E-value=2.9e-08 Score=97.88 Aligned_cols=92 Identities=24% Similarity=0.435 Sum_probs=62.1
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC---
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE--- 285 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~--- 285 (489)
.+.++-+.+...+..+..+..+. ++|. -+.+++||||||||||+|+.|||+++ |..++.+...++-
T Consensus 77 ~~~d~~~~~~~~~~~l~~~~~~~---~~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 77 EEFDFEFQPGIDKKALEDLASLV---EFFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred ccccccCCcchhHHHHHHHHHHH---HHhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 34445555555555555555443 2332 36799999999999999999999998 6778888777651
Q ss_pred ----ChHHH-HHHHHHccCCeEEEEccchhh
Q 011286 286 ----GNKDL-RQILIATENKSILVVEDIDCC 311 (489)
Q Consensus 286 ----~~~~L-~~l~~~~~~~sIL~iDdiD~~ 311 (489)
..... .++.....+-.+|+|||+-..
T Consensus 149 k~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 149 KAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred HHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 11112 223333677889999999965
No 200
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.79 E-value=2e-08 Score=100.01 Aligned_cols=134 Identities=25% Similarity=0.413 Sum_probs=80.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc---EEEeecCccCChHHHHHHHHHc-------------cCCeEEEEccchhh
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELSSVEGNKDLRQILIAT-------------ENKSILVVEDIDCC 311 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~---~~~l~~s~~~~~~~L~~l~~~~-------------~~~sIL~iDdiD~~ 311 (489)
++.+||+||+|||||++++..-..+.-. +..++++...+...+++++... .++.|+||||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 5789999999999999998766655433 3456666655556666555322 13579999999976
Q ss_pred hhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHh-hc--ccccCCC------CceEEEEecCCC---CCCCccccC
Q 011286 312 LEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNF-ID--GLWSSCG------DERIIIFTTNHK---DRLDPALLR 379 (489)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~-ld--gl~s~~g------~~~iiI~TTN~~---~~LDpALlR 379 (489)
.. + .........||.+ || |.+.... +.+.+|+++|.. ..+++.|+|
T Consensus 113 ~~--d--------------------~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r 170 (272)
T PF12775_consen 113 QP--D--------------------KYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR 170 (272)
T ss_dssp -------------------------TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT
T ss_pred CC--C--------------------CCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh
Confidence 42 1 1111112233322 22 4333221 346788888753 247889998
Q ss_pred CCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 380 PGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 380 pGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
.|- .+.+++|+.++...|+..++.
T Consensus 171 --~f~-i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 171 --HFN-ILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp --TEE-EEE----TCCHHHHHHHHHHH
T ss_pred --heE-EEEecCCChHHHHHHHHHHHh
Confidence 774 699999999998888777664
No 201
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.78 E-value=4.9e-08 Score=99.92 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=92.4
Q ss_pred cCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCChHHHHH-
Q 011286 217 AMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLRQ- 292 (489)
Q Consensus 217 ~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~~~L~~- 292 (489)
+|....-+.+++.+.... .....+||+|++||||+++|++|.... +.+++.+||+.+.. ..+..
T Consensus 2 iG~S~~m~~~~~~~~~~a-----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLA-----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHH
Confidence 344444455555555332 234679999999999999999998766 46999999998743 33332
Q ss_pred HH-----------------HHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccc-
Q 011286 293 IL-----------------IATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLW- 354 (489)
Q Consensus 293 l~-----------------~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~- 354 (489)
+| ........|||||||.+-. .....|+..|+.-.
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~---------------------------~~Q~~Ll~~l~~~~~ 122 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL---------------------------LVQEKLLRVIEYGEF 122 (329)
T ss_pred HhccccccccCcccccCCchhhCCCCEEEeCChHhCCH---------------------------HHHHHHHHHHHcCcE
Confidence 32 1123468999999998832 22234455543211
Q ss_pred cC------CCCceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCC--HHHHHHHHHHhhC
Q 011286 355 SS------CGDERIIIFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCT--PCGFKMLASNYLG 406 (489)
Q Consensus 355 s~------~g~~~iiI~TTN~~-------~~LDpALlRpGRf-d~~I~~~~p~--~~~~~~l~~~~l~ 406 (489)
.. ....+-||+|||.. ..+.+.|.. |+ ...|++|+.. .+.+..|+..|+.
T Consensus 123 ~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 123 ERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred EecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 01 01235677777753 345566666 77 4567777776 3556677777664
No 202
>PRK06526 transposase; Provisional
Probab=98.77 E-value=7.6e-09 Score=101.98 Aligned_cols=64 Identities=22% Similarity=0.341 Sum_probs=46.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC-------ChHHHHHHHHHccCCeEEEEccchhh
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE-------GNKDLRQILIATENKSILVVEDIDCC 311 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~-------~~~~L~~l~~~~~~~sIL~iDdiD~~ 311 (489)
+.+++|+||||||||+|+.+|+.++ |..++......+. ....+...+....+..+|+|||++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 5689999999999999999999886 6666555544331 11233444555566789999999976
No 203
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.7e-08 Score=101.73 Aligned_cols=65 Identities=22% Similarity=0.403 Sum_probs=56.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC--------ChHHHHHHHHHc------cCCeEEEEccchhhh
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE--------GNKDLRQILIAT------ENKSILVVEDIDCCL 312 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~--------~~~~L~~l~~~~------~~~sIL~iDdiD~~~ 312 (489)
+.++||.||+|+|||.|++.+|..++.|+...||+.+. -+.-+.+++..+ .+..|+||||+|.+.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 56899999999999999999999999999999999882 245677777665 357999999999996
No 204
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.74 E-value=8.9e-07 Score=86.78 Aligned_cols=64 Identities=27% Similarity=0.333 Sum_probs=43.5
Q ss_pred cccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC--CcEEEeecCcc
Q 011286 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN--FDVYDLELSSV 284 (489)
Q Consensus 213 fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~--~~~~~l~~s~~ 284 (489)
-+.++|+.+.++.- -.+...++.+. -..|++||.||||||||.||-||+.++| .||..+..|.+
T Consensus 37 ~~g~vGQ~~AReAa-giivdlik~Kk-------maGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEv 102 (456)
T KOG1942|consen 37 AAGFVGQENAREAA-GIIVDLIKSKK-------MAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEV 102 (456)
T ss_pred ccccccchhhhhhh-hHHHHHHHhhh-------ccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhh
Confidence 34567877776543 33444444443 2368999999999999999999999994 34444444433
No 205
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=1.1e-07 Score=96.98 Aligned_cols=123 Identities=14% Similarity=0.178 Sum_probs=88.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC-------------------------CcEEEeecCc----------cCChHHH
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN-------------------------FDVYDLELSS----------VEGNKDL 290 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~-------------------------~~~~~l~~s~----------~~~~~~L 290 (489)
..+.+|||+||+|+|||++|.++|..+. -+++.++... .-+-+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 3456899999999999999999999873 3456665422 1134666
Q ss_pred HHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEE
Q 011286 291 RQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIII 364 (489)
Q Consensus 291 ~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI 364 (489)
+.+..... ..-|++||++|.+-. ...+.||..++... ....+|
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~---------------------------~a~naLLk~LEep~----~~~~~I 147 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL---------------------------QAANSLLKVLEEPP----PQVVFL 147 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH---------------------------HHHHHHHHHHHhCc----CCCEEE
Confidence 76654442 356889999998732 33355777777642 346788
Q ss_pred EecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011286 365 FTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLAS 402 (489)
Q Consensus 365 ~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~ 402 (489)
++|++++.+.|.+.+ |. .++.|++|+.++....+.
T Consensus 148 lvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 148 LVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred EEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHH
Confidence 899999999999887 66 669999999988665553
No 206
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.72 E-value=3.7e-07 Score=99.12 Aligned_cols=157 Identities=15% Similarity=0.250 Sum_probs=97.0
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE 285 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~ 285 (489)
...+|++++|....-+.+++.+..... ....+||+|++||||+++|+++.... +.+++.+||+.+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~-----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM-----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 345799999988776777776654332 23469999999999999999986654 4689999999885
Q ss_pred ChHHHH-HHHH-----------------HccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHH
Q 011286 286 GNKDLR-QILI-----------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLL 347 (489)
Q Consensus 286 ~~~~L~-~l~~-----------------~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 347 (489)
. +.+. .+|. ...+...|||||||.+.. ..+ ..|+
T Consensus 268 ~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~------------------------~~Q---~~Ll 319 (520)
T PRK10820 268 D-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP------------------------RMQ---AKLL 319 (520)
T ss_pred H-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH------------------------HHH---HHHH
Confidence 3 2332 2332 123457899999998842 122 3344
Q ss_pred Hhhcc-cccCCCC------ceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHhhC
Q 011286 348 NFIDG-LWSSCGD------ERIIIFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCTP--CGFKMLASNYLG 406 (489)
Q Consensus 348 ~~ldg-l~s~~g~------~~iiI~TTN~~-------~~LDpALlRpGRf-d~~I~~~~p~~--~~~~~l~~~~l~ 406 (489)
+++.. .....|+ .+-||+||+.. ..+.+.|.. |+ ...|++|+... +.+..|+..|+.
T Consensus 320 ~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~ 393 (520)
T PRK10820 320 RFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVA 393 (520)
T ss_pred HHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHH
Confidence 44432 1111111 24567777653 234455555 64 35677777654 345556656553
No 207
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.68 E-value=2.4e-07 Score=91.66 Aligned_cols=128 Identities=23% Similarity=0.326 Sum_probs=72.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCC-cEEEeec--Ccc-----------------CCh------HHHHHHHHH---ccC
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNF-DVYDLEL--SSV-----------------EGN------KDLRQILIA---TEN 299 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~-~~~~l~~--s~~-----------------~~~------~~L~~l~~~---~~~ 299 (489)
..++|+||||+|||++++.+++.+.. .+..... ... ... ..+...+.. ...
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999999862 3222111 111 000 112222211 245
Q ss_pred CeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecC--CCCCCC-c-
Q 011286 300 KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTN--HKDRLD-P- 375 (489)
Q Consensus 300 ~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN--~~~~LD-p- 375 (489)
+.||+|||+|.+.. .....+..|.+...+ .+..+.||++.. ..+.+. +
T Consensus 124 ~~vliiDe~~~l~~------------------------~~~~~l~~l~~~~~~----~~~~~~vvl~g~~~~~~~l~~~~ 175 (269)
T TIGR03015 124 RALLVVDEAQNLTP------------------------ELLEELRMLSNFQTD----NAKLLQIFLVGQPEFRETLQSPQ 175 (269)
T ss_pred CeEEEEECcccCCH------------------------HHHHHHHHHhCcccC----CCCeEEEEEcCCHHHHHHHcCch
Confidence 78999999998732 111223333333211 112223333332 122221 2
Q ss_pred --cccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 376 --ALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 376 --ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
.+.+ |+...++++..+.++...++...+.
T Consensus 176 ~~~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 176 LQQLRQ--RIIASCHLGPLDREETREYIEHRLE 206 (269)
T ss_pred hHHHHh--heeeeeeCCCCCHHHHHHHHHHHHH
Confidence 3455 8888999999999999888887765
No 208
>PRK06921 hypothetical protein; Provisional
Probab=98.67 E-value=1.2e-07 Score=94.08 Aligned_cols=63 Identities=29% Similarity=0.358 Sum_probs=45.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeecCccCC-----hHHHHHHHHHccCCeEEEEccchh
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSSVEG-----NKDLRQILIATENKSILVVEDIDC 310 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~s~~~~-----~~~L~~l~~~~~~~sIL~iDdiD~ 310 (489)
..+++|+||||||||+|+.|||+++ +..++.+...++-. ...+...+....+..+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 5689999999999999999999987 56666666544310 112233344556678999999954
No 209
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.66 E-value=3.9e-07 Score=98.62 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=67.9
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHH-----------cCCcEEEe
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANY-----------LNFDVYDL 279 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~-----------l~~~~~~l 279 (489)
.+|++++|....-+.+.+.+..+.. ....+||+|++||||+++|++|-+. .+.|++.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~-----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR-----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 4799999998888888777765432 2457999999999999999999887 46799999
Q ss_pred ecCccCChHHHHH-HHH------------------HccCCeEEEEccchhhh
Q 011286 280 ELSSVEGNKDLRQ-ILI------------------ATENKSILVVEDIDCCL 312 (489)
Q Consensus 280 ~~s~~~~~~~L~~-l~~------------------~~~~~sIL~iDdiD~~~ 312 (489)
||+.+.. ..+.. +|. .......||||||+.+-
T Consensus 285 nCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp 335 (538)
T PRK15424 285 NCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 335 (538)
T ss_pred ecccCCh-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCC
Confidence 9998853 33332 221 12345789999999883
No 210
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.66 E-value=1.9e-07 Score=101.03 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=100.6
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE 285 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~ 285 (489)
...+|++++|....-+.+++.+..+.. ....+||+|++||||+++|++|.+.. +.+++.+||..+.
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~A~-----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~ 275 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLYAR-----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIA 275 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCC
Confidence 345799999998888888777765432 24579999999999999999998765 5799999999885
Q ss_pred ChHHHHH-HHH------------------HccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHH
Q 011286 286 GNKDLRQ-ILI------------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGL 346 (489)
Q Consensus 286 ~~~~L~~-l~~------------------~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 346 (489)
. ..+.. +|. .......||||||+.+-. .....|
T Consensus 276 e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~---------------------------~~Q~~L 327 (526)
T TIGR02329 276 E-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPL---------------------------PLQTRL 327 (526)
T ss_pred h-hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCH---------------------------HHHHHH
Confidence 3 22332 222 113457899999998832 222344
Q ss_pred HHhhcccc-cCCC------CceEEEEecCCC--C-----CCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHhhCc
Q 011286 347 LNFIDGLW-SSCG------DERIIIFTTNHK--D-----RLDPALLRPGRM-DVHIHMSYCTP--CGFKMLASNYLGI 407 (489)
Q Consensus 347 L~~ldgl~-s~~g------~~~iiI~TTN~~--~-----~LDpALlRpGRf-d~~I~~~~p~~--~~~~~l~~~~l~~ 407 (489)
+..++.-. ...| -.+-+|+|||.. + .+.+.|.. |+ ...|++|+... +.+..|+..|+..
T Consensus 328 l~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 328 LRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred HHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 55543211 0001 123467777654 1 22233333 45 36777877764 4566777777753
No 211
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.66 E-value=1e-07 Score=102.35 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=86.9
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc--EEEeecCccCC--
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD--VYDLELSSVEG-- 286 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~--~~~l~~s~~~~-- 286 (489)
..|+++.|+...++.+.-. ......++|.||||||||+++++++..+.-. -..++.+.+.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~a---------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIA---------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhh---------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 4799999988876655321 1234579999999999999999999765210 00111111100
Q ss_pred ----------------------hHH-------HHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCC
Q 011286 287 ----------------------NKD-------LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (489)
Q Consensus 287 ----------------------~~~-------L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (489)
... .+.=........||||||++.+-
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~------------------------- 308 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFK------------------------- 308 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCC-------------------------
Confidence 000 00001223346899999999762
Q ss_pred chhhHHHHHHHhhcccc---------cCCCCceEEEEecCCC------C-----------------CCCccccCCCceee
Q 011286 338 RFQVTLSGLLNFIDGLW---------SSCGDERIIIFTTNHK------D-----------------RLDPALLRPGRMDV 385 (489)
Q Consensus 338 ~~~~~ls~LL~~ldgl~---------s~~g~~~iiI~TTN~~------~-----------------~LDpALlRpGRfd~ 385 (489)
...+..|++.|+.-. ..-...+.+|+++|.- + +|...|+. |||.
T Consensus 309 --~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl 384 (499)
T TIGR00368 309 --RSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDL 384 (499)
T ss_pred --HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCE
Confidence 233344555553210 0111346788888842 1 58888888 9999
Q ss_pred EEEeCCCCHHHH
Q 011286 386 HIHMSYCTPCGF 397 (489)
Q Consensus 386 ~I~~~~p~~~~~ 397 (489)
+++++.++.+++
T Consensus 385 ~~~~~~~~~~~l 396 (499)
T TIGR00368 385 SVEVPLLPPEKL 396 (499)
T ss_pred EEEEcCCCHHHH
Confidence 999999987643
No 212
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.64 E-value=6.1e-07 Score=85.82 Aligned_cols=158 Identities=20% Similarity=0.275 Sum_probs=84.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcE---EEeecCccC---------------------------------------
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDV---YDLELSSVE--------------------------------------- 285 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~---~~l~~s~~~--------------------------------------- 285 (489)
...++|+||.|+|||+|++.+.+.+.-.- +.++.....
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 56899999999999999999999883311 111111100
Q ss_pred --ChHHHHHHHHHc---cCCeEEEEccchhhh-hhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 286 --GNKDLRQILIAT---ENKSILVVEDIDCCL-EMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 286 --~~~~L~~l~~~~---~~~sIL~iDdiD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
....+..++... ..+.||+|||++.+. . .......+..|.+.++..... ..
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~-~~ 156 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIA----------------------SEEDKDFLKSLRSLLDSLLSQ-QN 156 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBC----------------------TTTTHHHHHHHHHHHHH-----TT
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhc----------------------ccchHHHHHHHHHHHhhcccc-CC
Confidence 011222222222 235999999999986 2 112345556677777764332 22
Q ss_pred ceEEEEecCC---CC--CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC---ChHhHHHHHhccCCCHHHHH
Q 011286 360 ERIIIFTTNH---KD--RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP---LFLEVEELIEKVEVTPADVA 431 (489)
Q Consensus 360 ~~iiI~TTN~---~~--~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~---l~~~i~~l~~~~~~spa~i~ 431 (489)
-.+|+++++. .+ .-.+.+. ||+.. +.+++.+.++..+++...+... .. ...+++.+..-.+-.|..|.
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHh
Confidence 3344444431 11 1123333 38877 9999999999999998876544 32 24466666666777777665
Q ss_pred H
Q 011286 432 E 432 (489)
Q Consensus 432 ~ 432 (489)
.
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 4
No 213
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.62 E-value=1.2e-07 Score=101.57 Aligned_cols=141 Identities=21% Similarity=0.256 Sum_probs=87.8
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcE--EEeecCccC----
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV--YDLELSSVE---- 285 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~--~~l~~s~~~---- 285 (489)
.|..+.|+...++.+.- -......++|+||||||||++++.++..+.-.- ..++.+.+.
T Consensus 189 d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 67777777665554311 123345799999999999999999998773210 112221110
Q ss_pred -----------------ChHHHHHHH----------HHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCc
Q 011286 286 -----------------GNKDLRQIL----------IATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR 338 (489)
Q Consensus 286 -----------------~~~~L~~l~----------~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (489)
-......++ .......+||||||+.+-
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~-------------------------- 307 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFE-------------------------- 307 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCC--------------------------
Confidence 001111222 223446899999998752
Q ss_pred hhhHHHHHHHhhcc-cc--cC------CCCceEEEEecCCCC---------------------CCCccccCCCceeeEEE
Q 011286 339 FQVTLSGLLNFIDG-LW--SS------CGDERIIIFTTNHKD---------------------RLDPALLRPGRMDVHIH 388 (489)
Q Consensus 339 ~~~~ls~LL~~ldg-l~--s~------~g~~~iiI~TTN~~~---------------------~LDpALlRpGRfd~~I~ 388 (489)
..++..|++.|+. .. +. ...++.+|+|+|... +|..+++. |||+++.
T Consensus 308 -~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~ 384 (506)
T PRK09862 308 -RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLE 384 (506)
T ss_pred -HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEE
Confidence 3455666666632 11 11 123478899999642 57778998 9999999
Q ss_pred eCCCCHHH
Q 011286 389 MSYCTPCG 396 (489)
Q Consensus 389 ~~~p~~~~ 396 (489)
+++++.+.
T Consensus 385 v~~~~~~~ 392 (506)
T PRK09862 385 IPLPPPGI 392 (506)
T ss_pred eCCCCHHH
Confidence 99998773
No 214
>PF13173 AAA_14: AAA domain
Probab=98.59 E-value=2.6e-07 Score=81.40 Aligned_cols=64 Identities=20% Similarity=0.433 Sum_probs=48.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC--CcEEEeecCccCChH----HHHHHHHHc--cCCeEEEEccchhh
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN--FDVYDLELSSVEGNK----DLRQILIAT--ENKSILVVEDIDCC 311 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~--~~~~~l~~s~~~~~~----~L~~l~~~~--~~~sIL~iDdiD~~ 311 (489)
++.++|+||.|||||++++.++..+. .+++.+++.+..... ++.+.+.+. +.+.+||||||+.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh
Confidence 35689999999999999999998886 788888887653211 133444443 36799999999977
No 215
>PRK09183 transposase/IS protein; Provisional
Probab=98.59 E-value=1.1e-07 Score=94.26 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=46.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC-------ChHHHHHHHHH-ccCCeEEEEccchhh
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE-------GNKDLRQILIA-TENKSILVVEDIDCC 311 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~-------~~~~L~~l~~~-~~~~sIL~iDdiD~~ 311 (489)
..+++|+||||||||+|+.++|..+ |..+..++...+. ....+...+.. ...+.+|+|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4679999999999999999998764 6777776655441 11123344544 456789999999865
No 216
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.58 E-value=2.2e-06 Score=92.96 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=67.4
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCChH
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNK 288 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~~ 288 (489)
.++.++|....-+.+++.+.... +.+..+||+|++||||+++|++|.... +.+++.+||..+.. .
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a-----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA-----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-S 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-H
Confidence 57889998888888888777543 235679999999999999999999875 57999999998853 2
Q ss_pred HHH-HHHH-----------------HccCCeEEEEccchhhh
Q 011286 289 DLR-QILI-----------------ATENKSILVVEDIDCCL 312 (489)
Q Consensus 289 ~L~-~l~~-----------------~~~~~sIL~iDdiD~~~ 312 (489)
.+. .+|. .......|||||||.+-
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~ 294 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELP 294 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCC
Confidence 222 2222 12345789999999984
No 217
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.58 E-value=8.9e-08 Score=85.46 Aligned_cols=59 Identities=27% Similarity=0.371 Sum_probs=43.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC---cEEEeecCccCChHHHHHHHHHccCCeEEEEccchhhh
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNF---DVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCL 312 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~---~~~~l~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~~~ 312 (489)
...+||+|+|||||+++|++|....+. +++.+++.... .+++..+ .+..|+|+|||.+-
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l~~a-~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELLEQA-KGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHHHHC-TTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHHHHc-CCCEEEECChHHCC
Confidence 467999999999999999999998754 45555665543 3444444 77889999999984
No 218
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.57 E-value=2.7e-07 Score=95.54 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=105.8
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeecCccC
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSSVE 285 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~s~~~ 285 (489)
...+++|+|....-+++++.+..+ .+....+|++|++||||+.+|++|.... +.|++.+||+.+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 447999999988888888877752 2445679999999999999999987443 6699999999997
Q ss_pred ChHHHHHHHHHc-----------------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHH
Q 011286 286 GNKDLRQILIAT-----------------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLN 348 (489)
Q Consensus 286 ~~~~L~~l~~~~-----------------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~ 348 (489)
.+-....+|.-. .+..+||+|||..+-. ..+ -.||.
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~------------------------~~Q---~kLl~ 195 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP------------------------EGQ---EKLLR 195 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH------------------------hHH---HHHHH
Confidence 776666666321 2368999999998843 122 23455
Q ss_pred hhcc-ccc------CCCCceEEEEecCC-C-CCCCc--ccc-CCCceeeEEEeCCCCHH--HHHHHHHHhhCc
Q 011286 349 FIDG-LWS------SCGDERIIIFTTNH-K-DRLDP--ALL-RPGRMDVHIHMSYCTPC--GFKMLASNYLGI 407 (489)
Q Consensus 349 ~ldg-l~s------~~g~~~iiI~TTN~-~-~~LDp--ALl-RpGRfd~~I~~~~p~~~--~~~~l~~~~l~~ 407 (489)
.||. .+. .....+-+|++||- + +.+-. .|. | |+...|.+|+.... ++..|+..|+..
T Consensus 196 ~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r--l~~~~I~LPpLrER~~Di~~L~e~Fl~~ 266 (403)
T COG1221 196 VLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR--LNILTITLPPLRERKEDILLLAEHFLKS 266 (403)
T ss_pred HHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh--hcCceecCCChhhchhhHHHHHHHHHHH
Confidence 5553 111 11234667777763 2 22222 343 4 67788888887653 355666666653
No 219
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.57 E-value=6.9e-07 Score=86.80 Aligned_cols=66 Identities=26% Similarity=0.281 Sum_probs=56.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHHHcc-CCeEEEEccchhhh
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATE-NKSILVVEDIDCCL 312 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~-~~sIL~iDdiD~~~ 312 (489)
...|-.++||+|||||.+++++|..+|..++.++|+.-.+...+.++|..+. ..+-+++||++.+-
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~ 97 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLS 97 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSS
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhh
Confidence 3567889999999999999999999999999999999988999999997764 58999999999883
No 220
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.56 E-value=8.2e-08 Score=82.01 Aligned_cols=62 Identities=23% Similarity=0.332 Sum_probs=40.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHHHccCCeEEEEccchhhh
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCL 312 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~~~ 312 (489)
+.||||||+|||++++.+|..+...+-.-....+-....-.+.+..-....|+++||+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCccc
Confidence 57999999999999999998875333111111111111223445555677899999999764
No 221
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.55 E-value=1.9e-06 Score=96.84 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=67.9
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCCh
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGN 287 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~ 287 (489)
.+|++++|.....+.+++.+..... ....+||+|++|||||++|++|.... +.+++.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~-----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~- 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQ-----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA- 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-
Confidence 4789999999888888888875432 24579999999999999999998865 57999999998742
Q ss_pred HHHHH-HH-----------------HHccCCeEEEEccchhhh
Q 011286 288 KDLRQ-IL-----------------IATENKSILVVEDIDCCL 312 (489)
Q Consensus 288 ~~L~~-l~-----------------~~~~~~sIL~iDdiD~~~ 312 (489)
..+.. +| .....+++|||||||.+-
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~ 483 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMP 483 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCC
Confidence 11111 11 123346899999999883
No 222
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.55 E-value=3.3e-07 Score=90.95 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=105.5
Q ss_pred CCCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc---
Q 011286 199 TEIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD--- 275 (489)
Q Consensus 199 ~~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~--- 275 (489)
.-.|.+ .++|.++++|++..++-..+.+ | . |.+--...|+|||||||||+.+.|.|..+-.+
T Consensus 28 ~~pwve--kyrP~~l~dv~~~~ei~st~~~----~-------~--~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~ 92 (360)
T KOG0990|consen 28 PQPWVE--KYRPPFLGIVIKQEPIWSTENR----Y-------S--GMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPT 92 (360)
T ss_pred CCCCcc--CCCCchhhhHhcCCchhhHHHH----h-------c--cCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCc
Confidence 345765 7889999999998766554433 2 1 22222289999999999999999999988442
Q ss_pred ---EEEeecCccCCh---HHHHHHHHHcc---------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchh
Q 011286 276 ---VYDLELSSVEGN---KDLRQILIATE---------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQ 340 (489)
Q Consensus 276 ---~~~l~~s~~~~~---~~L~~l~~~~~---------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (489)
+..++.++-.+- ..-.+.|..+. ....+++||.|.+..
T Consensus 93 ~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~--------------------------- 145 (360)
T KOG0990|consen 93 TSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR--------------------------- 145 (360)
T ss_pred hhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH---------------------------
Confidence 223444443222 22223444433 456899999998842
Q ss_pred hHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCC
Q 011286 341 VTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHP 411 (489)
Q Consensus 341 ~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~ 411 (489)
..-+.|-..+.... .+.-+...+|++..+.|++.. |+.. ..|.+.+..+......+....+...
T Consensus 146 ~AQnALRRviek~t----~n~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~e~~~ 209 (360)
T KOG0990|consen 146 DAQNALRRVIEKYT----ANTRFATISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRESEQKE 209 (360)
T ss_pred HHHHHHHHHHHHhc----cceEEEEeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhcchhh
Confidence 11123333444442 334556888999999999997 7754 6777777777767676666654333
No 223
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.7e-06 Score=94.52 Aligned_cols=122 Identities=25% Similarity=0.328 Sum_probs=79.0
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCC-CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc------
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV------ 284 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~-~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~------ 284 (489)
.|+|+++.-..|-+.|...-. .++.+ +.-.+||.||.|+|||-||+|+|.++ .-.++.+|++++
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 456666666666665553221 12222 34458999999999999999999998 456888999863
Q ss_pred -------CChHHHHHHHHHccC--CeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccccc
Q 011286 285 -------EGNKDLRQILIATEN--KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWS 355 (489)
Q Consensus 285 -------~~~~~L~~l~~~~~~--~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s 355 (489)
.+....-++.....+ -+||+|||||..- ...++.|+..+|.-.-
T Consensus 637 igsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh---------------------------~~v~n~llq~lD~Grl 689 (898)
T KOG1051|consen 637 IGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH---------------------------PDVLNILLQLLDRGRL 689 (898)
T ss_pred cCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC---------------------------HHHHHHHHHHHhcCcc
Confidence 122333444444443 4999999999762 2445666666664322
Q ss_pred --CCC-----CceEEEEecCC
Q 011286 356 --SCG-----DERIIIFTTNH 369 (489)
Q Consensus 356 --~~g-----~~~iiI~TTN~ 369 (489)
+.| .+.|||+|+|.
T Consensus 690 tDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 690 TDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred ccCCCcEeeccceEEEEeccc
Confidence 222 24799999884
No 224
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.1e-06 Score=87.88 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=50.6
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHh-CCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~-g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~ 284 (489)
-++|+.+.|+.+-=.+..-..+...-..+ .--.|+++|..||.|+|||.+|+.+|...+.||+.+..+.+
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 36899999998865554333322221111 12347899999999999999999999999999998876544
No 225
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.49 E-value=7.2e-07 Score=91.90 Aligned_cols=156 Identities=21% Similarity=0.225 Sum_probs=102.0
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeec--------
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL-------- 281 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~-------- 281 (489)
.-+|.-++|++.+|..+..... .+--.|+|+-|+.|||||++++|+|..|.--.....|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 3468888999999988865432 3334689999999999999999999988321111111
Q ss_pred ------------------------------CccCChH------HHHHHHH-----------HccCCeEEEEccchhhhhh
Q 011286 282 ------------------------------SSVEGNK------DLRQILI-----------ATENKSILVVEDIDCCLEM 314 (489)
Q Consensus 282 ------------------------------s~~~~~~------~L~~l~~-----------~~~~~sIL~iDdiD~~~~~ 314 (489)
....+.+ ++.+.+. ...++.||+|||+..+-+
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d- 158 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD- 158 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH-
Confidence 0001111 2233332 123578999999997732
Q ss_pred hhhHHhhhhcccccccccccCCCchhhHHHHHHHhh---------cccccCCCCceEEEEecCCC-CCCCccccCCCcee
Q 011286 315 QDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFI---------DGLWSSCGDERIIIFTTNHK-DRLDPALLRPGRMD 384 (489)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l---------dgl~s~~g~~~iiI~TTN~~-~~LDpALlRpGRfd 384 (489)
.....||+.+ +|+.-...-.+++|+|+|.- ..|-|-|+. ||.
T Consensus 159 --------------------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg 210 (423)
T COG1239 159 --------------------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFG 210 (423)
T ss_pred --------------------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhc
Confidence 2334455444 44443434468999999954 578888988 999
Q ss_pred eEEEeCCCC-HHHHHHHHHHhhCc
Q 011286 385 VHIHMSYCT-PCGFKMLASNYLGI 407 (489)
Q Consensus 385 ~~I~~~~p~-~~~~~~l~~~~l~~ 407 (489)
.+|...+|. .+++.++..+-+..
T Consensus 211 ~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 211 LEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred ceeeccCCCCHHHHHHHHHHHHHh
Confidence 999998886 56677777665543
No 226
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.49 E-value=4.6e-06 Score=88.08 Aligned_cols=75 Identities=24% Similarity=0.379 Sum_probs=54.9
Q ss_pred CCCCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 011286 198 DTEIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (489)
Q Consensus 198 ~~~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~ 277 (489)
.+..|.. ...|++.++|+.......+|.+.+..+... ......+-+||+||+|||||+.++.||.++|+.+.
T Consensus 68 ~~elW~e--Ky~P~t~eeLAVHkkKI~eVk~WL~~~~~~------~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 68 EFELWVE--KYKPRTLEELAVHKKKISEVKQWLKQVAEF------TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred ccchhHH--hcCcccHHHHhhhHHhHHHHHHHHHHHHHh------ccCCCceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 4557876 678999999998876666665555422111 11233456899999999999999999999999887
Q ss_pred Eee
Q 011286 278 DLE 280 (489)
Q Consensus 278 ~l~ 280 (489)
.-.
T Consensus 140 Ew~ 142 (634)
T KOG1970|consen 140 EWS 142 (634)
T ss_pred eec
Confidence 643
No 227
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.47 E-value=2.8e-06 Score=82.90 Aligned_cols=164 Identities=18% Similarity=0.255 Sum_probs=111.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-CCcE---------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDV--------- 276 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~~--------- 276 (489)
...|.+|+.+....+....+..... . | . -..+|+|||+|+||-|.+.|+-+++ |..+
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~-----~------~-d-~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t 72 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSS-----T------G-D-FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT 72 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcc-----c------C-C-CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE
Confidence 5778999999888877776644221 0 0 0 1379999999999999999999887 2111
Q ss_pred -------------------EEeecCccCC--hHHHHHHHHHccC-----------CeEEEEccchhhhhhhhhHHhhhhc
Q 011286 277 -------------------YDLELSSVEG--NKDLRQILIATEN-----------KSILVVEDIDCCLEMQDRLAKAKAA 324 (489)
Q Consensus 277 -------------------~~l~~s~~~~--~~~L~~l~~~~~~-----------~sIL~iDdiD~~~~~~~~~~~~~~~ 324 (489)
+.++.|+.+. .--+++++..+.+ =-+++|.|+|.+..
T Consensus 73 ~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~----------- 141 (351)
T KOG2035|consen 73 FTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR----------- 141 (351)
T ss_pred EecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH-----------
Confidence 1233343322 2224455543321 15899999998842
Q ss_pred ccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011286 325 IPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNY 404 (489)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~ 404 (489)
....+|-..|+...+.| -+|+.+|...++-+++.. |. ..|.+|.|+.++.-.++.+.
T Consensus 142 ----------------dAQ~aLRRTMEkYs~~~----RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v 198 (351)
T KOG2035|consen 142 ----------------DAQHALRRTMEKYSSNC----RLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKV 198 (351)
T ss_pred ----------------HHHHHHHHHHHHHhcCc----eEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHH
Confidence 12234555566654443 477888999999889887 65 56999999999999999999
Q ss_pred hCcCCCCChHhHH
Q 011286 405 LGITEHPLFLEVE 417 (489)
Q Consensus 405 l~~~~~~l~~~i~ 417 (489)
+..++..+..++.
T Consensus 199 ~~kE~l~lp~~~l 211 (351)
T KOG2035|consen 199 LKKEGLQLPKELL 211 (351)
T ss_pred HHHhcccCcHHHH
Confidence 9888777765543
No 228
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.46 E-value=6.4e-07 Score=78.36 Aligned_cols=65 Identities=32% Similarity=0.566 Sum_probs=43.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc--------CCcEEEeecCccCChHHH---------------------HHHHHHc-
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL--------NFDVYDLELSSVEGNKDL---------------------RQILIAT- 297 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l--------~~~~~~l~~s~~~~~~~L---------------------~~l~~~~- 297 (489)
++.++++||||+|||++++.++..+ +.+++.+++....+...+ .+.+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4578999999999999999999988 778888777654322222 2222111
Q ss_pred --cCCeEEEEccchhhh
Q 011286 298 --ENKSILVVEDIDCCL 312 (489)
Q Consensus 298 --~~~sIL~iDdiD~~~ 312 (489)
....+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 112599999999963
No 229
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=7.5e-06 Score=80.35 Aligned_cols=113 Identities=17% Similarity=0.132 Sum_probs=80.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC----------------------CcEEEeecCc-cCChHHHHHHHHHc---c-
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN----------------------FDVYDLELSS-VEGNKDLRQILIAT---E- 298 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~----------------------~~~~~l~~s~-~~~~~~L~~l~~~~---~- 298 (489)
..+-++||+||+|+||..+|.++|..+- -+++.+.... .-+.++++++.... +
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3467899999999999999999998872 1233322111 12334555544332 2
Q ss_pred ---CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCc
Q 011286 299 ---NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDP 375 (489)
Q Consensus 299 ---~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDp 375 (489)
..-|++|+++|.+- ....+.||..++. ++...++|++|+.++.+-|
T Consensus 85 e~~~~KV~II~~ae~m~---------------------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLp 133 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN---------------------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILN 133 (261)
T ss_pred hcCCCEEEEeccHhhhC---------------------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCch
Confidence 25799999999873 3456889999987 3567899999999999999
Q ss_pred cccCCCceeeEEEeCCC
Q 011286 376 ALLRPGRMDVHIHMSYC 392 (489)
Q Consensus 376 ALlRpGRfd~~I~~~~p 392 (489)
.+++ |.. .+.|+.+
T Consensus 134 TI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 134 TILS--RCV-QYVVLSK 147 (261)
T ss_pred Hhhh--hee-eeecCCh
Confidence 9998 864 4677666
No 230
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=1.2e-05 Score=80.42 Aligned_cols=112 Identities=18% Similarity=0.236 Sum_probs=80.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC----------------cEEEeecCc---cCChHHHHHHHHHcc------CCe
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF----------------DVYDLELSS---VEGNKDLRQILIATE------NKS 301 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~----------------~~~~l~~s~---~~~~~~L~~l~~~~~------~~s 301 (489)
.+.+|||+||+|+||+.+|.++|..+-. +++.+.... .-+.+.++.+..... ..-
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 3568999999999999999999988732 344442221 123455555554432 246
Q ss_pred EEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCC
Q 011286 302 ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPG 381 (489)
Q Consensus 302 IL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpG 381 (489)
|++||++|.+- ...-+.||..|+.- ++..++|+.|+.++.|.|.+++
T Consensus 98 v~ii~~ad~mt---------------------------~~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ll~TI~S-- 144 (290)
T PRK05917 98 IYIIHEADRMT---------------------------LDAISAFLKVLEDP----PQHGVIILTSAKPQRLPPTIRS-- 144 (290)
T ss_pred EEEEechhhcC---------------------------HHHHHHHHHHhhcC----CCCeEEEEEeCChhhCcHHHHh--
Confidence 99999999883 24457899999873 4678999999999999999987
Q ss_pred ceeeEEEeCCC
Q 011286 382 RMDVHIHMSYC 392 (489)
Q Consensus 382 Rfd~~I~~~~p 392 (489)
|+ ..+.|+.+
T Consensus 145 Rc-q~~~~~~~ 154 (290)
T PRK05917 145 RS-LSIHIPME 154 (290)
T ss_pred cc-eEEEccch
Confidence 76 45778754
No 231
>PHA02624 large T antigen; Provisional
Probab=98.42 E-value=9.2e-07 Score=95.27 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=80.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhh
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKA 323 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~ 323 (489)
|+|.++.+|||||||||||+++++|++.++-.++.++... +.+.--+.-+...-+.+|||+-.-.-....-.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt----~ks~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp---- 498 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFMVVFEDVKGQPADNKDLP---- 498 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc----chhHHHhhhhhhceEEEeeeccccccccccCC----
Confidence 6788899999999999999999999999966666665432 33444445556678999999974321000000
Q ss_pred cccccccccccCCCchhhHHHHHHHhhcccccCCCC-----c-----eEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 011286 324 AIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD-----E-----RIIIFTTNHKDRLDPALLRPGRMDVHIHMSY 391 (489)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~-----~-----~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~ 391 (489)
.+..-..+..|-|.+||-..-+-+ . --.|.|||. ..|+..+.- ||-.++.|..
T Consensus 499 ------------~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 499 ------------SGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ------------cccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 111223356788888986111110 0 135678886 456777776 8888888864
No 232
>PF05729 NACHT: NACHT domain
Probab=98.41 E-value=2.7e-06 Score=77.03 Aligned_cols=133 Identities=21% Similarity=0.297 Sum_probs=72.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCC---------cEEEeecCccCChH---HHHHHH------------------HHcc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNF---------DVYDLELSSVEGNK---DLRQIL------------------IATE 298 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~---------~~~~l~~s~~~~~~---~L~~l~------------------~~~~ 298 (489)
|-++++|+||+|||++++.++..+.. -++.+.+....... .+...+ ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 35789999999999999999987721 12233443332111 222222 2234
Q ss_pred CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCC-CCCccc
Q 011286 299 NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKD-RLDPAL 377 (489)
Q Consensus 299 ~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~-~LDpAL 377 (489)
.+.+|+||.+|.+........ .......+..++.. ... .+-.++|.+..+.. .+...+
T Consensus 81 ~~~llilDglDE~~~~~~~~~----------------~~~~~~~l~~l~~~--~~~---~~~~liit~r~~~~~~~~~~~ 139 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQE----------------RQRLLDLLSQLLPQ--ALP---PGVKLIITSRPRAFPDLRRRL 139 (166)
T ss_pred CceEEEEechHhcccchhhhH----------------HHHHHHHHHHHhhh--ccC---CCCeEEEEEcCChHHHHHHhc
Confidence 578999999998864111000 01112233333332 011 12233443332222 222222
Q ss_pred cCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 378 LRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 378 lRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
.. ...++++..+.++.++++++|+.
T Consensus 140 ~~----~~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 140 KQ----AQILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred CC----CcEEEECCCCHHHHHHHHHHHhh
Confidence 22 15689999999999999999886
No 233
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.40 E-value=1.4e-06 Score=97.92 Aligned_cols=127 Identities=17% Similarity=0.267 Sum_probs=77.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCc-------EEEeecCccCC-hHHH-HHH-----HHHccCCeEEEEccchhhhhhh
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFD-------VYDLELSSVEG-NKDL-RQI-----LIATENKSILVVEDIDCCLEMQ 315 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~-------~~~l~~s~~~~-~~~L-~~l-----~~~~~~~sIL~iDdiD~~~~~~ 315 (489)
.+||.|+||||||.+++++++..... ...++++.... .... ... ........+++|||+|.+-.
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~-- 571 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHN-- 571 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCH--
Confidence 69999999999999999999865433 33333333210 0000 000 01123468999999998732
Q ss_pred hhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc---------cccCCCCceEEEEecCCCC-------------CC
Q 011286 316 DRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG---------LWSSCGDERIIIFTTNHKD-------------RL 373 (489)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------l~s~~g~~~iiI~TTN~~~-------------~L 373 (489)
.....|+..|+. +...-....-||+|+|..+ .|
T Consensus 572 -------------------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~L 626 (915)
T PTZ00111 572 -------------------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINI 626 (915)
T ss_pred -------------------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCC
Confidence 222345555532 1111123467899999742 36
Q ss_pred CccccCCCceeeE-EEeCCCCHHHHHHHHHHhh
Q 011286 374 DPALLRPGRMDVH-IHMSYCTPCGFKMLASNYL 405 (489)
Q Consensus 374 DpALlRpGRfd~~-I~~~~p~~~~~~~l~~~~l 405 (489)
+++|+. |||.. +.++.|+.+.=+.|+.+.+
T Consensus 627 p~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 627 SPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred ChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 799999 99886 4457888776556554443
No 234
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.40 E-value=2.6e-06 Score=93.96 Aligned_cols=50 Identities=34% Similarity=0.414 Sum_probs=40.4
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD 275 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 275 (489)
..|+.++|+++.++.+...+. .+++++|+||||||||++++++|+.++.+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 578899999888876654443 13589999999999999999999999654
No 235
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=1.5e-05 Score=80.33 Aligned_cols=122 Identities=14% Similarity=0.171 Sum_probs=89.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC-------------cEEEee--cCccCChHHHHHHHHHc-------cCCeEEE
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF-------------DVYDLE--LSSVEGNKDLRQILIAT-------ENKSILV 304 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~-------------~~~~l~--~s~~~~~~~L~~l~~~~-------~~~sIL~ 304 (489)
....|||+|+.|.||+.++.++|+.+.. ++..++ ... -+.++++.+.... ...-|++
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-i~vd~Ir~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-LSKSEFLSAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-CCHHHHHHHHHHhccCCcccCCceEEE
Confidence 4568999999999999999999998711 334444 222 2346677666544 2567999
Q ss_pred EccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCcee
Q 011286 305 VEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMD 384 (489)
Q Consensus 305 iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd 384 (489)
||++|.+. ....+.||..|+.. ++..++|++|+.++.|-|.+.. |.
T Consensus 96 I~~~e~m~---------------------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~S--Rc- 141 (299)
T PRK07132 96 IKNIEKTS---------------------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVS--RC- 141 (299)
T ss_pred EecccccC---------------------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHh--Ce-
Confidence 99998773 23456789998883 4567888888888999999887 65
Q ss_pred eEEEeCCCCHHHHHHHHHH
Q 011286 385 VHIHMSYCTPCGFKMLASN 403 (489)
Q Consensus 385 ~~I~~~~p~~~~~~~l~~~ 403 (489)
.+++|++++.++....+..
T Consensus 142 ~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 142 QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred EEEECCCCCHHHHHHHHHH
Confidence 5699999999887765543
No 236
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=3.1e-05 Score=77.60 Aligned_cols=120 Identities=19% Similarity=0.252 Sum_probs=84.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC------------------------CcEEEeecCc-cCChHHHHHHHHHcc--
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN------------------------FDVYDLELSS-VEGNKDLRQILIATE-- 298 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~------------------------~~~~~l~~s~-~~~~~~L~~l~~~~~-- 298 (489)
..+.+|||+|| +||+++|.++|..+. -+++.+.... .-..+.++.+.....
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34568999996 689999999998762 2333333321 123466666654432
Q ss_pred ----CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCC
Q 011286 299 ----NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLD 374 (489)
Q Consensus 299 ----~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LD 374 (489)
..-|++||++|.+. ...-+.||..++. ++.+.++|++|+.++.|-
T Consensus 100 p~~~~~kV~II~~ad~m~---------------------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lL 148 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH---------------------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVL 148 (290)
T ss_pred cccCCcEEEEeehhhhcC---------------------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCc
Confidence 35799999999883 2445789999987 346689999999999999
Q ss_pred ccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011286 375 PALLRPGRMDVHIHMSYCTPCGFKMLAS 402 (489)
Q Consensus 375 pALlRpGRfd~~I~~~~p~~~~~~~l~~ 402 (489)
|.+.+ |. .+|.|+. +.+...+++.
T Consensus 149 pTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 149 PTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred hHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 99998 76 5688876 5555554443
No 237
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=4.6e-07 Score=94.57 Aligned_cols=48 Identities=29% Similarity=0.425 Sum_probs=39.5
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
...|.+|.|++..|+.+.-.. .-..++|++||||||||++|+.+...|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 447999999999999874322 335689999999999999999998766
No 238
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.36 E-value=9e-07 Score=91.50 Aligned_cols=96 Identities=19% Similarity=0.316 Sum_probs=61.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCC------cEEEe--e----cCcc-CChHHHHHHHHHccCCe-EEEEccchh
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLNF------DVYDL--E----LSSV-EGNKDLRQILIATENKS-ILVVEDIDC 310 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------~~~~l--~----~s~~-~~~~~L~~l~~~~~~~s-IL~iDdiD~ 310 (489)
.+.++|++||||+|+|||+|.-...+.+.. ++... + +..+ .....+..+.....+.+ ||+|||+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V 138 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQV 138 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeec
Confidence 467899999999999999999999887744 11111 0 0000 12233444444444444 999999985
Q ss_pred hhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCC
Q 011286 311 CLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHK 370 (489)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~ 370 (489)
- +-.....+..|++.+=. .++++|+|+|++
T Consensus 139 ~------------------------DiaDAmil~rLf~~l~~------~gvvlVaTSN~~ 168 (362)
T PF03969_consen 139 T------------------------DIADAMILKRLFEALFK------RGVVLVATSNRP 168 (362)
T ss_pred c------------------------chhHHHHHHHHHHHHHH------CCCEEEecCCCC
Confidence 4 12234566777766532 358999999964
No 239
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.30 E-value=2.5e-05 Score=84.72 Aligned_cols=171 Identities=17% Similarity=0.177 Sum_probs=106.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc----------CCcEEEeecCccCChHH----------------------HHHHHH-
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLELSSVEGNKD----------------------LRQILI- 295 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~~l~~s~~~~~~~----------------------L~~l~~- 295 (489)
.++++.|-||||||.++..+-+.| .++++.+|.-.+.+..+ |..-|.
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 468889999999999999998876 46777777666533222 222222
Q ss_pred --HccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCC
Q 011286 296 --ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRL 373 (489)
Q Consensus 296 --~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~L 373 (489)
....++||+|||.|.+.. ..+.+ |.|++|-... .+...+||+..|+.+..
T Consensus 503 ~k~~~~~~VvLiDElD~Lvt------------------------r~QdV---lYn~fdWpt~-~~sKLvvi~IaNTmdlP 554 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDILVT------------------------RSQDV---LYNIFDWPTL-KNSKLVVIAIANTMDLP 554 (767)
T ss_pred CCCCCCCEEEEeccHHHHhc------------------------ccHHH---HHHHhcCCcC-CCCceEEEEecccccCH
Confidence 112479999999999973 11222 4555554332 34456777777765432
Q ss_pred ----CccccCCCcee-eEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhccCCCHHHHHHHHhcCCCHHHHHHHHH
Q 011286 374 ----DPALLRPGRMD-VHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEVTPADVAEQLMRDEVPKIALSGLI 448 (489)
Q Consensus 374 ----DpALlRpGRfd-~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~~l~~~~~~~~al~~l~ 448 (489)
.+.... |++ ..|.|.+.+.+|+.+|+..-|....+- ..+..+++.. .+..-++|+..|++-..
T Consensus 555 Er~l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f-~~~aielvar---------kVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 555 ERLLMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGLDAF-ENKAIELVAR---------KVAAVSGDARRALDICR 622 (767)
T ss_pred HHHhccchhh--hccceeeecCCCCHHHHHHHHHHhhcchhhc-chhHHHHHHH---------HHHhccccHHHHHHHHH
Confidence 222222 432 458899999999999998877644222 2233334331 12223578888888888
Q ss_pred HHHHHHHhhcc
Q 011286 449 QFLQIKKRETG 459 (489)
Q Consensus 449 ~~l~~~~~~~~ 459 (489)
.+.+.......
T Consensus 623 RA~Eia~~~~~ 633 (767)
T KOG1514|consen 623 RAAEIAEERNV 633 (767)
T ss_pred HHHHHhhhhcc
Confidence 88777666544
No 240
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.29 E-value=1.1e-05 Score=80.40 Aligned_cols=179 Identities=18% Similarity=0.239 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEeecCccCChHHHHH-H
Q 011286 224 KMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELSSVEGNKDLRQ-I 293 (489)
Q Consensus 224 ~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~~~~l~~s~~~~~~~L~~-l 293 (489)
+++++.++..+..|. ..-..++||+|++|.|||++++..+... ..|++.+....--+...+-. +
T Consensus 43 ~~~L~~L~~Ll~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 43 KEALDRLEELLEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred HHHHHHHHHHHhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 456677777666552 2234589999999999999999998765 24566665543322222211 1
Q ss_pred H-----------------------HHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhh
Q 011286 294 L-----------------------IATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFI 350 (489)
Q Consensus 294 ~-----------------------~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 350 (489)
+ .+.-+.-+|+|||++.++....+ .+ ..+||.+
T Consensus 117 L~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~---------------------~q---r~~Ln~L 172 (302)
T PF05621_consen 117 LEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYR---------------------KQ---REFLNAL 172 (302)
T ss_pred HHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHH---------------------HH---HHHHHHH
Confidence 1 11224579999999998642111 12 2234444
Q ss_pred cccccCCCCceEEEEecCCCC--CCCccccCCCceeeEEEeCCCC-HHHHHHHHHHhhC---cCC-CCC-hHhH-HHHHh
Q 011286 351 DGLWSSCGDERIIIFTTNHKD--RLDPALLRPGRMDVHIHMSYCT-PCGFKMLASNYLG---ITE-HPL-FLEV-EELIE 421 (489)
Q Consensus 351 dgl~s~~g~~~iiI~TTN~~~--~LDpALlRpGRfd~~I~~~~p~-~~~~~~l~~~~l~---~~~-~~l-~~~i-~~l~~ 421 (489)
..+.+...=.++.|+|-.-.. .-|+-+.+ ||+. +.+|.-. .+++..|+..+-. ... ..+ ..++ ..+..
T Consensus 173 K~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~ 249 (302)
T PF05621_consen 173 KFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHE 249 (302)
T ss_pred HHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 433222222245555543222 23778888 9976 4555433 3456666655432 221 112 2233 23344
Q ss_pred ccCCCHHHHHHHHh
Q 011286 422 KVEVTPADVAEQLM 435 (489)
Q Consensus 422 ~~~~spa~i~~~l~ 435 (489)
..+-+.+++...+.
T Consensus 250 ~s~G~iG~l~~ll~ 263 (302)
T PF05621_consen 250 RSEGLIGELSRLLN 263 (302)
T ss_pred HcCCchHHHHHHHH
Confidence 44555566655553
No 241
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.29 E-value=6e-06 Score=88.54 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=94.9
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCChH
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNK 288 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~~ 288 (489)
.+..++|....-+.+...+.... +....+|+.|++||||+++|+++.... +.+++.++|+.+.. .
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~ 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS-----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-D 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh-----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-H
Confidence 35567776655555555444222 224579999999999999999999886 46899999998843 3
Q ss_pred HHHHHH-HH-----------------ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhh
Q 011286 289 DLRQIL-IA-----------------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFI 350 (489)
Q Consensus 289 ~L~~l~-~~-----------------~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 350 (489)
.+...+ .. ...+..|||||||.+.. .....|+..+
T Consensus 204 ~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~---------------------------~~q~~L~~~l 256 (469)
T PRK10923 204 LIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL---------------------------DVQTRLLRVL 256 (469)
T ss_pred HHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH---------------------------HHHHHHHHHH
Confidence 333333 21 22357899999998842 1123455555
Q ss_pred cccc--cCCC-----CceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHhhC
Q 011286 351 DGLW--SSCG-----DERIIIFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCTP--CGFKMLASNYLG 406 (489)
Q Consensus 351 dgl~--s~~g-----~~~iiI~TTN~~-------~~LDpALlRpGRf-d~~I~~~~p~~--~~~~~l~~~~l~ 406 (489)
+.-. ...+ -.+-||+||+.. ..+.+.|.. |+ ..+|++|+... +.+..|+..|+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~ 327 (469)
T PRK10923 257 ADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQ 327 (469)
T ss_pred hcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHH
Confidence 4311 0001 124567777643 245566665 66 56777777654 456667777664
No 242
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=2.4e-05 Score=81.37 Aligned_cols=198 Identities=17% Similarity=0.088 Sum_probs=120.4
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEeecCccCC
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELSSVEG 286 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~~~~l~~s~~~~ 286 (489)
.=+++.|-+...+.+.+.+...+. ..-.+.+.+.|-||||||.+..-+-..+ ....+.++|.++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle---------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~ 218 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE---------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTE 218 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh---------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccc
Confidence 345667776666666555544433 2335678999999999998887654444 33557888887632
Q ss_pred hH---------------------HHHHHHHHc----cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhh
Q 011286 287 NK---------------------DLRQILIAT----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQV 341 (489)
Q Consensus 287 ~~---------------------~L~~l~~~~----~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (489)
.. ++.+.|... ..+-||++||+|.+.. + .+.
T Consensus 219 ~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t---r---------------------~~~ 274 (529)
T KOG2227|consen 219 ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT---R---------------------SQT 274 (529)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhh---c---------------------ccc
Confidence 11 122222221 2367999999999962 1 111
Q ss_pred HHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccC----CCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC-hH-h
Q 011286 342 TLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLR----PGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL-FL-E 415 (489)
Q Consensus 342 ~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlR----pGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~-~ 415 (489)
.|-.+..+...++..+++|+..|..+.-|..|-| -+--...+.|++++.++..+|+..-+....... .. .
T Consensus 275 ----vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~A 350 (529)
T KOG2227|consen 275 ----VLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAA 350 (529)
T ss_pred ----eeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHH
Confidence 1222333333445678999999988877755532 234456799999999999999998887543222 22 3
Q ss_pred HHHHHhccCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 011286 416 VEELIEKVEVTPADVAEQLMRDEVPKIALSGLIQFLQIKKR 456 (489)
Q Consensus 416 i~~l~~~~~~spa~i~~~l~~~~~~~~al~~l~~~l~~~~~ 456 (489)
++-++..+. -.+||...||+-...+++....
T Consensus 351 ie~~ArKva----------a~SGDlRkaLdv~R~aiEI~E~ 381 (529)
T KOG2227|consen 351 IELCARKVA----------APSGDLRKALDVCRRAIEIAEI 381 (529)
T ss_pred HHHHHHHhc----------cCchhHHHHHHHHHHHHHHHHH
Confidence 333332221 1246777777777766655443
No 243
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.26 E-value=1.8e-05 Score=78.84 Aligned_cols=148 Identities=22% Similarity=0.211 Sum_probs=77.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHH--c--CCc-EEEeecCccCCh------------------------HHHHHHHHH
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANY--L--NFD-VYDLELSSVEGN------------------------KDLRQILIA 296 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~--l--~~~-~~~l~~s~~~~~------------------------~~L~~l~~~ 296 (489)
...+-+.|+|++|+|||+||..+++. . .++ ++.++++...+. ..+...+..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 34567899999999999999999977 3 232 334444432111 112222222
Q ss_pred c--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCC
Q 011286 297 T--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLD 374 (489)
Q Consensus 297 ~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LD 374 (489)
. ..+++|||||++.... +..+...+-.. ..+.-||.||.......
T Consensus 97 ~L~~~~~LlVlDdv~~~~~-----------------------------~~~l~~~~~~~----~~~~kilvTTR~~~v~~ 143 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEED-----------------------------LEELREPLPSF----SSGSKILVTTRDRSVAG 143 (287)
T ss_dssp HHCCTSEEEEEEEE-SHHH-----------------------------H-------HCH----HSS-EEEEEESCGGGGT
T ss_pred hhccccceeeeeeeccccc-----------------------------ccccccccccc----ccccccccccccccccc
Confidence 1 3489999999985521 11122211111 11234556665533211
Q ss_pred ccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC----CCChHhHHHHHhccCCCHHHH
Q 011286 375 PALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE----HPLFLEVEELIEKVEVTPADV 430 (489)
Q Consensus 375 pALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~----~~l~~~i~~l~~~~~~spa~i 430 (489)
..- .-+..++++..+.++-..|+..+..... ..+.+...+++...+..|--+
T Consensus 144 -~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal 199 (287)
T PF00931_consen 144 -SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLAL 199 (287)
T ss_dssp -THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHH
T ss_pred -ccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 111 1157899999999999999999876544 222333445555555455443
No 244
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.22 E-value=2e-05 Score=83.90 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=59.6
Q ss_pred cccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCChHH
Q 011286 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKD 289 (489)
Q Consensus 213 fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~~~ 289 (489)
+..+++.....+.+...+.... .....++++|++||||+++|+++.... +.+++.++|..+.. ..
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKIA-----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HH
Confidence 4455655555555555443221 224579999999999999999998776 46899999998843 33
Q ss_pred HHHHHHH------------------ccCCeEEEEccchhhh
Q 011286 290 LRQILIA------------------TENKSILVVEDIDCCL 312 (489)
Q Consensus 290 L~~l~~~------------------~~~~sIL~iDdiD~~~ 312 (489)
+...+.. ...+.+|||||||.+.
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~ 246 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP 246 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC
Confidence 4333211 1346799999999884
No 245
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.21 E-value=1.9e-05 Score=70.86 Aligned_cols=63 Identities=17% Similarity=0.366 Sum_probs=42.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC-----------------------------ChHHHH---HHHH
Q 011286 251 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE-----------------------------GNKDLR---QILI 295 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~-----------------------------~~~~L~---~l~~ 295 (489)
++++||||+|||+++.++|..+ +.+++.++..... ....+. ..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 4455544432210 011111 1223
Q ss_pred HccCCeEEEEccchhhhh
Q 011286 296 ATENKSILVVEDIDCCLE 313 (489)
Q Consensus 296 ~~~~~sIL~iDdiD~~~~ 313 (489)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 345688999999999875
No 246
>PHA02774 E1; Provisional
Probab=98.20 E-value=1.2e-05 Score=86.45 Aligned_cols=58 Identities=28% Similarity=0.452 Sum_probs=43.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEE-eecCccCChHHHHHHHHHccCCeEEEEccc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD-LELSSVEGNKDLRQILIATENKSILVVEDI 308 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~-l~~s~~~~~~~L~~l~~~~~~~sIL~iDdi 308 (489)
|.|.+++++||||||||||+++.+|++.++-.++. ++..+ . -.+......-|++|||+
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~----FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---H----FWLQPLADAKIALLDDA 488 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---c----cccchhccCCEEEEecC
Confidence 56667899999999999999999999999766544 54321 1 11344455679999999
No 247
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.18 E-value=1.5e-05 Score=85.13 Aligned_cols=152 Identities=17% Similarity=0.244 Sum_probs=93.8
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCChHHH
Q 011286 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDL 290 (489)
Q Consensus 214 d~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~~~L 290 (489)
..+++....-+++...+.... .....+++.|.+||||+++++++.... +.+++.++|..+. .+.+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a-----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~-~~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS-----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIP-KDLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh-----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCC-HHHH
Confidence 346666656566665554321 224579999999999999999998875 5689999999883 3333
Q ss_pred HHHHHH------------------ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc
Q 011286 291 RQILIA------------------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG 352 (489)
Q Consensus 291 ~~l~~~------------------~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 352 (489)
...+.. ...++.|||||||.+-. .....|++.++.
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~---------------------------~~q~~ll~~l~~ 254 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL---------------------------DAQTRLLRVLAD 254 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH---------------------------HHHHHHHHHHhc
Confidence 333311 12367899999998842 112345555542
Q ss_pred c-ccCCC------CceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCC--HHHHHHHHHHhhC
Q 011286 353 L-WSSCG------DERIIIFTTNHK-------DRLDPALLRPGRMD-VHIHMSYCT--PCGFKMLASNYLG 406 (489)
Q Consensus 353 l-~s~~g------~~~iiI~TTN~~-------~~LDpALlRpGRfd-~~I~~~~p~--~~~~~~l~~~~l~ 406 (489)
- ....| -.+-||+||+.. ..+.+.|.. |+. .+|++|+.. .+....|+..|+.
T Consensus 255 ~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~ 323 (463)
T TIGR01818 255 GEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLA 323 (463)
T ss_pred CcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHH
Confidence 1 11101 124566777643 234445554 554 488888887 5667777777764
No 248
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.18 E-value=9.1e-06 Score=91.95 Aligned_cols=187 Identities=21% Similarity=0.245 Sum_probs=120.3
Q ss_pred CCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHh-cHHHHHHhCCCC-Cc-eEEEECCCCCcHHHHHHHHHHHcCCcE
Q 011286 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLK-RKEFYKRVGKAW-KR-GYLLYGPPGTGKSSLIAAMANYLNFDV 276 (489)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~-~~~~y~~~g~~~-~r-g~LL~GPpGtGKTsla~aiA~~l~~~~ 276 (489)
..|.. .+.|.....+.+....-..+.+.+..+-. .+.-|...+... .. .+|++||||.|||+.+.+.|.++|+.+
T Consensus 308 ~~~~~--k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v 385 (871)
T KOG1968|consen 308 AGWTE--KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKV 385 (871)
T ss_pred ccccc--ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccce
Confidence 45665 45666667888877776666666665511 112222222211 12 369999999999999999999999999
Q ss_pred EEeecCccCChHHHHHHHHHcc--------------------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 277 YDLELSSVEGNKDLRQILIATE--------------------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 277 ~~l~~s~~~~~~~L~~l~~~~~--------------------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+..|.+...+...+...+..+. ...||++||+|.++. .+|+.
T Consensus 386 ~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dRg~----------------- 447 (871)
T KOG1968|consen 386 VEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDRGG----------------- 447 (871)
T ss_pred eecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhhhh-----------------
Confidence 9999998877666655543321 124999999998875 33221
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCCh-Hh
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF-LE 415 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~-~~ 415 (489)
-..++++.. . -.+-+|+|+|..+......+. |-+.-|+|+.|+.+++..-+..++..+...+. +.
T Consensus 448 ---v~~l~~l~~---k------s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~ 513 (871)
T KOG1968|consen 448 ---VSKLSSLCK---K------SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDV 513 (871)
T ss_pred ---HHHHHHHHH---h------ccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHH
Confidence 122333333 1 125688999987776663333 44477999999999988777776665544432 23
Q ss_pred HHHHH
Q 011286 416 VEELI 420 (489)
Q Consensus 416 i~~l~ 420 (489)
+++++
T Consensus 514 l~~~s 518 (871)
T KOG1968|consen 514 LEEIS 518 (871)
T ss_pred HHHHH
Confidence 44443
No 249
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.14 E-value=2e-05 Score=84.06 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=48.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCChHHHHHH-HHH-----------------ccCCeEEEEc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLRQI-LIA-----------------TENKSILVVE 306 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~~~L~~l-~~~-----------------~~~~sIL~iD 306 (489)
...+|++|++||||+++|+++.... +.+++.++|..+.. ..+... |.. .....+||||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 244 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLD 244 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEe
Confidence 4579999999999999999998765 57899999998853 333332 221 1235799999
Q ss_pred cchhhh
Q 011286 307 DIDCCL 312 (489)
Q Consensus 307 diD~~~ 312 (489)
|||.+-
T Consensus 245 ~i~~l~ 250 (457)
T PRK11361 245 EIGEMP 250 (457)
T ss_pred chhhCC
Confidence 999984
No 250
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.14 E-value=2e-05 Score=86.34 Aligned_cols=120 Identities=19% Similarity=0.159 Sum_probs=85.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCC--cEEEeecCc----cCChHHHHHHHHH-----------ccCCeEEEEccchhh
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELSS----VEGNKDLRQILIA-----------TENKSILVVEDIDCC 311 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~--~~~~l~~s~----~~~~~~L~~l~~~-----------~~~~sIL~iDdiD~~ 311 (489)
.|+||-|++|||||+++++++..+.. ++..+-.+. +-+.-+|...+.. ...+.||||||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 58999999999999999999999865 666554432 2233444444422 123689999999976
Q ss_pred hhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc---------cccCCCCceEEEEecCCC---CCCCccccC
Q 011286 312 LEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG---------LWSSCGDERIIIFTTNHK---DRLDPALLR 379 (489)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------l~s~~g~~~iiI~TTN~~---~~LDpALlR 379 (489)
- ..+++.|++.|+. .........++|+|-|.. ..|.++|+.
T Consensus 106 ~---------------------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD 158 (584)
T PRK13406 106 E---------------------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD 158 (584)
T ss_pred C---------------------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh
Confidence 3 4677888888763 222223456778875432 568999999
Q ss_pred CCceeeEEEeCCCCHHHH
Q 011286 380 PGRMDVHIHMSYCTPCGF 397 (489)
Q Consensus 380 pGRfd~~I~~~~p~~~~~ 397 (489)
||+++|.+++++..+.
T Consensus 159 --Rf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 159 --RLAFHLDLDGLALRDA 174 (584)
T ss_pred --heEEEEEcCCCChHHh
Confidence 9999999999987653
No 251
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.13 E-value=3.1e-05 Score=91.95 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=42.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
...+..++.++|.++..+++...+. .+....+-+-++||+|+||||||+++++.+..
T Consensus 177 ~~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 177 LTPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred cccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 4456678889998777776655442 12334567889999999999999999888743
No 252
>PHA00729 NTP-binding motif containing protein
Probab=98.11 E-value=4.2e-06 Score=80.59 Aligned_cols=29 Identities=17% Similarity=0.402 Sum_probs=25.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~ 277 (489)
..++|+|+||||||+||.+||+.++..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~ 46 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLN 46 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcc
Confidence 37999999999999999999999864443
No 253
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.10 E-value=8.1e-05 Score=79.10 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=68.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~ 283 (489)
..++-+|++++|....-.++++.+..+ .+....+|+.|.+||||..+|++|-+.. +-||+.+||..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 455668999999887777776655433 3445689999999999999999998877 67999999999
Q ss_pred cCChHHHH-HHHH------------------HccCCeEEEEccchhh
Q 011286 284 VEGNKDLR-QILI------------------ATENKSILVVEDIDCC 311 (489)
Q Consensus 284 ~~~~~~L~-~l~~------------------~~~~~sIL~iDdiD~~ 311 (489)
+- +.-|. .+|. +..+..-||+|||..+
T Consensus 307 iP-e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem 352 (560)
T COG3829 307 IP-ETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM 352 (560)
T ss_pred CC-HHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC
Confidence 83 11222 2331 1123578999999977
No 254
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2.2e-05 Score=88.39 Aligned_cols=149 Identities=17% Similarity=0.245 Sum_probs=95.8
Q ss_pred cccccCC-HHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEEeec
Q 011286 213 FDTLAMD-FDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLEL 281 (489)
Q Consensus 213 fd~l~~~-~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~~l~~ 281 (489)
++.++|. ++.-+++++.+. ..-+++-+|.|.||+|||.++.-+|+.. +..++.+++
T Consensus 185 ldPvigr~deeirRvi~iL~-------------Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILS-------------RKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHh-------------ccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 6778886 555555555443 3345789999999999999999999876 345666776
Q ss_pred CccC--------ChHHHHHHHHH---ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhh
Q 011286 282 SSVE--------GNKDLRQILIA---TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFI 350 (489)
Q Consensus 282 s~~~--------~~~~L~~l~~~---~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 350 (489)
..+. -+..++.++.. ...+.||||||++.+.+.... ....-...+|..+
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~--------------------~~~~d~~nlLkp~ 311 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN--------------------YGAIDAANLLKPL 311 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc--------------------chHHHHHHhhHHH
Confidence 6541 24556666654 346789999999999752221 0111222333332
Q ss_pred cccccCCCCceEEEEecCCC-----CCCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011286 351 DGLWSSCGDERIIIFTTNHK-----DRLDPALLRPGRMDVHIHMSYCTPCGFKMLAS 402 (489)
Q Consensus 351 dgl~s~~g~~~iiI~TTN~~-----~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~ 402 (489)
-. . +++-+|+||..- -.-||||-| ||+. +.++.|+.+....++.
T Consensus 312 L~---r--g~l~~IGatT~e~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~ 360 (898)
T KOG1051|consen 312 LA---R--GGLWCIGATTLETYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILP 360 (898)
T ss_pred Hh---c--CCeEEEecccHHHHHHHHhhCcchhh--Ccce-eEeccCcccchhhhhh
Confidence 22 1 236677766632 233899999 9987 6789998765444443
No 255
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.02 E-value=0.00012 Score=72.29 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=43.4
Q ss_pred eEEEEecCC------------CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHh
Q 011286 361 RIIIFTTNH------------KDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE 421 (489)
Q Consensus 361 ~iiI~TTN~------------~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~ 421 (489)
-++|++||+ |..++-.|+. |+ ..|...+.+.++.+.|++.-+..++..+.++...++-
T Consensus 318 PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt 387 (454)
T KOG2680|consen 318 PIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLT 387 (454)
T ss_pred cEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHH
Confidence 377778875 5677888887 87 5678888888889999998888777777666555443
No 256
>PRK15115 response regulator GlrR; Provisional
Probab=98.01 E-value=3.7e-05 Score=81.80 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=48.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCChHHHHHH-HH-----------------HccCCeEEEEc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLRQI-LI-----------------ATENKSILVVE 306 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~~~L~~l-~~-----------------~~~~~sIL~iD 306 (489)
...++++|++||||+++|+++.... +.+++.++|..+.. ..+... |. .......||||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEE
Confidence 4569999999999999999998875 47899999998742 333332 21 11235789999
Q ss_pred cchhhh
Q 011286 307 DIDCCL 312 (489)
Q Consensus 307 diD~~~ 312 (489)
|||.+.
T Consensus 236 ~i~~l~ 241 (444)
T PRK15115 236 EIGDMP 241 (444)
T ss_pred ccccCC
Confidence 999984
No 257
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.98 E-value=2e-05 Score=77.82 Aligned_cols=91 Identities=18% Similarity=0.234 Sum_probs=60.1
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-----cEEE-----eecCc-
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-----DVYD-----LELSS- 283 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~-----~~~~-----l~~s~- 283 (489)
.|.|+.-+++.|+..+..++..+. -..|--+=|||+|||||+..++.||+.+-. +++. .++..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 578999999999999998887652 111233458999999999999999998732 2211 11111
Q ss_pred --cC-ChHHHHHHHHHc---cCCeEEEEccchhh
Q 011286 284 --VE-GNKDLRQILIAT---ENKSILVVEDIDCC 311 (489)
Q Consensus 284 --~~-~~~~L~~l~~~~---~~~sIL~iDdiD~~ 311 (489)
++ -..+|+.-+... -.++|.++||+|.+
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 11 112333333332 34799999999988
No 258
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.97 E-value=5.4e-05 Score=87.85 Aligned_cols=125 Identities=26% Similarity=0.363 Sum_probs=90.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHH--------------------HHHccCCeEEEEcc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQI--------------------LIATENKSILVVED 307 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l--------------------~~~~~~~sIL~iDd 307 (489)
.+++||.|.||.|||+|+.|+|+..|-.++.+++++- .+|..+ +..++++.-+++||
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQ---TdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDE 1619 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQ---TDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDE 1619 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeecccc---chHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeeh
Confidence 4679999999999999999999999999999999864 233333 34456677888999
Q ss_pred chhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc-----------cccCCCCceEEEEecCCC------
Q 011286 308 IDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG-----------LWSSCGDERIIIFTTNHK------ 370 (489)
Q Consensus 308 iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-----------l~s~~g~~~iiI~TTN~~------ 370 (489)
+.... +.++-||-..+|. .. .+..+..|++|-|..
T Consensus 1620 iNLaS---------------------------QSVlEGLNacLDhR~eayIPEld~~f-~~HpnfrVFAaqNPq~qggGR 1671 (4600)
T COG5271 1620 INLAS---------------------------QSVLEGLNACLDHRREAYIPELDKTF-DVHPNFRVFAAQNPQDQGGGR 1671 (4600)
T ss_pred hhhhH---------------------------HHHHHHHHHHHhhcccccccccccee-eccCCeeeeeecCchhcCCCc
Confidence 88542 3445555444442 22 223345556666632
Q ss_pred CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 371 DRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 371 ~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
..|+..++. ||.+ |.|.-.+.+....|+...++
T Consensus 1672 KgLPkSF~n--RFsv-V~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1672 KGLPKSFLN--RFSV-VKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred ccCCHHHhh--hhhe-EEecccccchHHHHHHhhCC
Confidence 468999998 9964 89999999888888877665
No 259
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=97.96 E-value=0.00034 Score=65.61 Aligned_cols=138 Identities=9% Similarity=0.111 Sum_probs=96.0
Q ss_pred eEEEeeecCCccCcchhHHHHHHHhCCCCCcc-ccceeeeccC----------------------CCCceEEeccCCceE
Q 011286 59 LTLLIEEYDDGLNQNKLFKAAKLYLEPKIPPY-VKRIKLNLAK----------------------KETNVSLSLEKNEEI 115 (489)
Q Consensus 59 ~ti~I~e~~~~~~~N~~y~a~~~YL~t~~~~~-~~rl~~~~~~----------------------~~~~~~~~~~~~~~~ 115 (489)
.|+.|+.. +++|+.+-.+|+...... ++++.+.... ....+.+.|..| ..
T Consensus 27 ~sv~I~~~------D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h 99 (187)
T PF08740_consen 27 SSVEIPSD------DEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-TH 99 (187)
T ss_pred EEEEECCC------CHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CE
Confidence 46666654 689999999998876444 5676665421 346788999999 77
Q ss_pred EeeecCeEEEEEEeecCCCCCccccccccccCCcceEEEEEeCCCChhHHHHhhhhHHHhhhhhhhhccceEEEEeecCC
Q 011286 116 VDVFNGVQLKWKFESKPDPEREVHNNQNYLVKSNITFFALRFHKKHKDTVLRTYIPHILKKSKELSKKKKTLKLFTLFPY 195 (489)
Q Consensus 116 ~d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vl~~yl~~v~~~~~~~~~~~~~~~i~~~~~~ 195 (489)
...|+| .|..+.+..++.... ...+.+.++++|++..+++. +|+.+|.+..+... +..+..+.||...+.
T Consensus 100 ~F~y~G---~~~~~~R~~~~~~~~----~~~~~~~e~l~l~~lg~s~~-~l~~ll~ear~~~~--~~~~~~t~Iy~~~~~ 169 (187)
T PF08740_consen 100 WFWYKG---RWFWFSRQRESNSYN----SWTGAPDETLTLSCLGRSPK-PLKDLLEEAREYYL--KKQKGKTTIYRADGS 169 (187)
T ss_pred EEEECC---EEEEEEEEecccccc----ccCCCCceEEEEEEecCCHH-HHHHHHHHHHHHHH--HhcCCcEEEEeCCCC
Confidence 788999 688888776333222 11245689999999999875 66666665544432 344556789988532
Q ss_pred CCCCCCceEcccCCCCCcccc
Q 011286 196 RGDTEIWQSVNLDHPATFDTL 216 (489)
Q Consensus 196 ~~~~~~w~~~~~~~p~~fd~l 216 (489)
. ..|..+...+++++++|
T Consensus 170 ~---~~W~~~~~r~~RplsTV 187 (187)
T PF08740_consen 170 E---YRWRRVASRPKRPLSTV 187 (187)
T ss_pred C---CCCcCCCCcCCCCCCCC
Confidence 1 16999888888999986
No 260
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.96 E-value=5.2e-05 Score=72.21 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=32.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~ 283 (489)
|++...-++++||||||||+++..+|... +..++.++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 67777789999999999999999887644 66777777764
No 261
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.95 E-value=6.9e-06 Score=70.97 Aligned_cols=31 Identities=39% Similarity=0.741 Sum_probs=27.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
|++.||||+||||+++.+|+.++++++.++-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776643
No 262
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.93 E-value=7.1e-05 Score=79.44 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=49.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCChHHHHHHHHH------------------ccCCeEEEEc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLRQILIA------------------TENKSILVVE 306 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~~~L~~l~~~------------------~~~~sIL~iD 306 (489)
...++++|.+||||+++++++.... +.+++.++|+.+. ...+...+.. ...+++||||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~-~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN-ESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC-HHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEe
Confidence 4679999999999999999998765 5789999999875 3444443321 1236789999
Q ss_pred cchhhh
Q 011286 307 DIDCCL 312 (489)
Q Consensus 307 diD~~~ 312 (489)
|||.+.
T Consensus 241 ei~~l~ 246 (441)
T PRK10365 241 EIGDIS 246 (441)
T ss_pred ccccCC
Confidence 999984
No 263
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.92 E-value=1.9e-05 Score=84.94 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=52.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-CCcEEEeec
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLEL 281 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~~~~l~~ 281 (489)
..+..-|+++.|.++.+++|++.+...... + ...++.++|.||||+|||+|+++||+.+ .+++|.+..
T Consensus 69 i~ry~fF~d~yGlee~ieriv~~l~~Aa~g------l-~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 69 IKRYPAFEEFYGMEEAIEQIVSYFRHAAQG------L-EEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cccccchhcccCcHHHHHHHHHHHHHHHHh------c-CCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 344557999999999999998877543322 1 2234678899999999999999999988 568887755
No 264
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.91 E-value=4.8e-05 Score=71.90 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=60.0
Q ss_pred EEEECCCCCcHHHHHHHH-HHHc---CCcEEEeecCccC-----C---------------------hHHHHHHHHHccCC
Q 011286 251 YLLYGPPGTGKSSLIAAM-ANYL---NFDVYDLELSSVE-----G---------------------NKDLRQILIATENK 300 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~ai-A~~l---~~~~~~l~~s~~~-----~---------------------~~~L~~l~~~~~~~ 300 (489)
++++|.||+|||+.|-.. .... |.+++. +...+. . ...+ ..+...+..
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDP-DDWRKLPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGH-HHHTTSGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhh-hhhcccCCC
Confidence 689999999999987655 3332 666665 443221 0 0111 112223468
Q ss_pred eEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCC
Q 011286 301 SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRP 380 (489)
Q Consensus 301 sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRp 380 (489)
+||||||+...++.+...+ ......++.+... ...+.-||++|.++..||+.+++
T Consensus 81 ~liviDEa~~~~~~r~~~~---------------------~~~~~~~~~l~~h---Rh~g~diiliTQ~~~~id~~ir~- 135 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWKG---------------------KKVPEIIEFLAQH---RHYGWDIILITQSPSQIDKFIRD- 135 (193)
T ss_dssp -EEEETTGGGTSB---T-T-------------------------HHHHGGGGC---CCTT-EEEEEES-GGGB-HHHHC-
T ss_pred cEEEEECChhhcCCCcccc---------------------ccchHHHHHHHHh---CcCCcEEEEEeCCHHHHhHHHHH-
Confidence 9999999999987433210 0011223444332 12347899999999999998887
Q ss_pred CceeeEEEeCCC
Q 011286 381 GRMDVHIHMSYC 392 (489)
Q Consensus 381 GRfd~~I~~~~p 392 (489)
.++.++++-.+
T Consensus 136 -lve~~~~~~k~ 146 (193)
T PF05707_consen 136 -LVEYHYHCRKL 146 (193)
T ss_dssp -CEEEEEEEEE-
T ss_pred -HHheEEEEEee
Confidence 88999887654
No 265
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.89 E-value=2.5e-05 Score=75.19 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=39.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCc-------------c---CChHHHHHHHHHc----cCCeEEEEcc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS-------------V---EGNKDLRQILIAT----ENKSILVVED 307 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~-------------~---~~~~~L~~l~~~~----~~~sIL~iDd 307 (489)
+.-+|+||+||+|||++|+.+++. .-++..+.+. + ...+.+...+... ....+||||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 355999999999999999999742 2222222211 0 1123444443322 2357999999
Q ss_pred chhhhh
Q 011286 308 IDCCLE 313 (489)
Q Consensus 308 iD~~~~ 313 (489)
|+.+..
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 998754
No 266
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.87 E-value=9.7e-05 Score=79.91 Aligned_cols=159 Identities=23% Similarity=0.278 Sum_probs=89.9
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhC-CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCc--c------C
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS--V------E 285 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g-~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~--~------~ 285 (489)
++.+.+++|+-++- ..|=....-+...| ..-.-++||+|.||||||-|.+.+++.+..-+|.---.+ + .
T Consensus 430 sIye~edvKkglLL--qLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLL--QLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHH--HHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 34466777777643 22322222333333 111236999999999999999999999877666321111 1 1
Q ss_pred ChHHHHHHHHHc-----cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhc---------
Q 011286 286 GNKDLRQILIAT-----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFID--------- 351 (489)
Q Consensus 286 ~~~~L~~l~~~~-----~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld--------- 351 (489)
.+.+-++++.+. ....|.+|||+|.+-... -+.|+..|+
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dSt---------------------------rSvLhEvMEQQTvSIAKA 560 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSDST---------------------------RSVLHEVMEQQTLSIAKA 560 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhHHH---------------------------HHHHHHHHHHhhhhHhhc
Confidence 112233333333 357899999999984311 122222222
Q ss_pred ccccCCCCceEEEEecCCCC-------------CCCccccCCCceeeEEEe-CCCCHHHHHHHHHHh
Q 011286 352 GLWSSCGDERIIIFTTNHKD-------------RLDPALLRPGRMDVHIHM-SYCTPCGFKMLASNY 404 (489)
Q Consensus 352 gl~s~~g~~~iiI~TTN~~~-------------~LDpALlRpGRfd~~I~~-~~p~~~~~~~l~~~~ 404 (489)
|+..+-+-.--|+++.|..+ .|+|.|++ |||.+.-+ ..|++..=+.|..+.
T Consensus 561 GII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hi 625 (804)
T KOG0478|consen 561 GIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHI 625 (804)
T ss_pred ceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHH
Confidence 32222222335788888331 36899999 99986544 666666444455443
No 267
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.83 E-value=0.00064 Score=70.91 Aligned_cols=89 Identities=24% Similarity=0.280 Sum_probs=57.6
Q ss_pred EEEEecC--CCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCC---------------------CCChHhHHH
Q 011286 362 IIIFTTN--HKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITE---------------------HPLFLEVEE 418 (489)
Q Consensus 362 iiI~TTN--~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~---------------------~~l~~~i~~ 418 (489)
+|+.|++ ....|..|| |+|.-..|.++.++++.-+..+...|.... .....++..
T Consensus 186 VIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~ 263 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDE 263 (431)
T ss_pred EEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHH
Confidence 4444444 234556666 558778999999999999998888886531 124556777
Q ss_pred HHhccCCCHHHHHHHH--hcC-CCHHHHHHHHHHHHH
Q 011286 419 LIEKVEVTPADVAEQL--MRD-EVPKIALSGLIQFLQ 452 (489)
Q Consensus 419 l~~~~~~spa~i~~~l--~~~-~~~~~al~~l~~~l~ 452 (489)
.+...+----|+.-+. ++. ..|+.|++.++..-.
T Consensus 264 ~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~qsa 300 (431)
T PF10443_consen 264 CIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQSA 300 (431)
T ss_pred HHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7775554334444333 333 589999988876533
No 268
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.83 E-value=1.9e-05 Score=72.37 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=31.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
+.+..++|+||||||||++++++|..+++++++.+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 34668999999999999999999999999998654
No 269
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.82 E-value=1.1e-05 Score=82.81 Aligned_cols=129 Identities=24% Similarity=0.260 Sum_probs=71.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCc----c-----C----ChHHHHHHHHHccCCeEEEEccchhhhhhhh
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS----V-----E----GNKDLRQILIATENKSILVVEDIDCCLEMQD 316 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~----~-----~----~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~ 316 (489)
++||.|.||||||.|.+.+++.....+|..-.+. + . ++-.+..-..-...+.|++|||+|.+-.
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~--- 135 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE--- 135 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C---
T ss_pred ceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccc---
Confidence 6999999999999999998877766665432111 1 0 1101111111124679999999998732
Q ss_pred hHHhhhhcccccccccccCCCchhhHHHHHHHhhccc---------ccCCCCceEEEEecCCCC-------------CCC
Q 011286 317 RLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL---------WSSCGDERIIIFTTNHKD-------------RLD 374 (489)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl---------~s~~g~~~iiI~TTN~~~-------------~LD 374 (489)
.....|+..|+.- ...-.-+.-|++++|... .++
T Consensus 136 ------------------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~ 191 (331)
T PF00493_consen 136 ------------------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLP 191 (331)
T ss_dssp ------------------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-
T ss_pred ------------------------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccc
Confidence 1234455555531 111112346888888654 478
Q ss_pred ccccCCCceeeEEEe-CCCCHHHHHHHHHHhhCc
Q 011286 375 PALLRPGRMDVHIHM-SYCTPCGFKMLASNYLGI 407 (489)
Q Consensus 375 pALlRpGRfd~~I~~-~~p~~~~~~~l~~~~l~~ 407 (489)
+.|+. |||..+.+ ..++.+.=+.|+++.+..
T Consensus 192 ~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 192 PPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred hhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 89999 99998765 666666666666665543
No 270
>PRK07261 topology modulation protein; Provisional
Probab=97.82 E-value=4.1e-05 Score=71.01 Aligned_cols=31 Identities=29% Similarity=0.450 Sum_probs=28.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
+++.|+||+|||||++.++..++.+++.+|.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 7899999999999999999999998877654
No 271
>PF14516 AAA_35: AAA-like domain
Probab=97.81 E-value=0.00045 Score=70.87 Aligned_cols=134 Identities=19% Similarity=0.247 Sum_probs=78.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCC-----hH-------------------------------
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG-----NK------------------------------- 288 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~-----~~------------------------------- 288 (489)
+.-+.++||..+|||||...+.+.+ |+..+.+|+..+.. .+
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 5567899999999999999887766 77888888776521 01
Q ss_pred -HHHHH-----HHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc------cccC
Q 011286 289 -DLRQI-----LIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG------LWSS 356 (489)
Q Consensus 289 -~L~~l-----~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg------l~s~ 356 (489)
.+... +....+|-||+|||||.+++. ......+-++|..+-. .|.
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~----------------------~~~~~dF~~~LR~~~~~~~~~~~~~- 167 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY----------------------PQIADDFFGLLRSWYEQRKNNPIWQ- 167 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccC----------------------cchHHHHHHHHHHHHHhcccCcccc-
Confidence 11111 122245889999999999741 1111122233332211 121
Q ss_pred CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 357 CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 357 ~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
.-+++++-+.........=..|--+...|.++..+.++...|++.|-.
T Consensus 168 --~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~ 215 (331)
T PF14516_consen 168 --KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGL 215 (331)
T ss_pred --eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhc
Confidence 112333332222221111135556677899999999999999988743
No 272
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.81 E-value=0.00038 Score=66.02 Aligned_cols=91 Identities=26% Similarity=0.411 Sum_probs=53.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCC----------hHHHHHHHHHc-----------cCCeEE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG----------NKDLRQILIAT-----------ENKSIL 303 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~----------~~~L~~l~~~~-----------~~~sIL 303 (489)
.+..++.||||||||+++++++..+ +..++.+..+.-.. ...+..++... ....+|
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEE
Confidence 3568899999999999999987666 66777776654311 11122222111 234799
Q ss_pred EEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCC
Q 011286 304 VVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNH 369 (489)
Q Consensus 304 ~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~ 369 (489)
+|||+..+. ...+..|+..+.. .+..+|+|+=.+.
T Consensus 98 iVDEasmv~---------------------------~~~~~~ll~~~~~----~~~klilvGD~~Q 132 (196)
T PF13604_consen 98 IVDEASMVD---------------------------SRQLARLLRLAKK----SGAKLILVGDPNQ 132 (196)
T ss_dssp EESSGGG-B---------------------------HHHHHHHHHHS-T-----T-EEEEEE-TTS
T ss_pred EEecccccC---------------------------HHHHHHHHHHHHh----cCCEEEEECCcch
Confidence 999999773 2344556655554 2446777776664
No 273
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=7.1e-05 Score=77.56 Aligned_cols=103 Identities=23% Similarity=0.315 Sum_probs=64.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc----C-CcEEEeecCcc----------------------CChHHHHHHHHHccCC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL----N-FDVYDLELSSV----------------------EGNKDLRQILIATENK 300 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l----~-~~~~~l~~s~~----------------------~~~~~L~~l~~~~~~~ 300 (489)
+..++|.||+|+|||+++..||..+ | ..+..+..... .+...+...+....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4568999999999999999999764 3 24443333221 2334455566666677
Q ss_pred eEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccc
Q 011286 301 SILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPAL 377 (489)
Q Consensus 301 sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpAL 377 (489)
.+|+||...... ....+...+..+.+... +-+.++|+-+|+..+.++..+
T Consensus 217 DlVLIDTaG~~~--------------------------~d~~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 217 HMVLIDTIGMSQ--------------------------RDRTVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CEEEEcCCCCCc--------------------------ccHHHHHHHHHHhccCC-CCeEEEEecCccChHHHHHHH
Confidence 888888886431 12334555666654322 123466667777777776543
No 274
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.76 E-value=0.00026 Score=65.76 Aligned_cols=31 Identities=29% Similarity=0.284 Sum_probs=23.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 251 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
+|++||||||||+|+..++.+. |.+++.+++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 7899999999999998876654 555554443
No 275
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.75 E-value=0.00031 Score=73.85 Aligned_cols=134 Identities=18% Similarity=0.187 Sum_probs=80.1
Q ss_pred HHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEee-cCccCChHHHH---HHHHHcc--CCeEEEEccchhhhhh
Q 011286 241 KRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE-LSSVEGNKDLR---QILIATE--NKSILVVEDIDCCLEM 314 (489)
Q Consensus 241 ~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~-~s~~~~~~~L~---~l~~~~~--~~sIL~iDdiD~~~~~ 314 (489)
+.....++ -++++||.+||||++++-+...+.-.++.++ +........+. ..+.... .++.||||||.+.-+
T Consensus 31 ~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~- 108 (398)
T COG1373 31 KKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPD- 108 (398)
T ss_pred hhcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchh-
Confidence 33344444 8999999999999999888888755433333 33332333332 2222222 458999999998731
Q ss_pred hhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCC-CccccCCCceeeEEEeCCCC
Q 011286 315 QDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRL-DPALLRPGRMDVHIHMSYCT 393 (489)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~L-DpALlRpGRfd~~I~~~~p~ 393 (489)
....+..|. |. +..-++|.++|..-.+ ..+-.-|||. ..+++.+.+
T Consensus 109 ------------------------W~~~lk~l~---d~-----~~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlS 155 (398)
T COG1373 109 ------------------------WERALKYLY---DR-----GNLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLS 155 (398)
T ss_pred ------------------------HHHHHHHHH---cc-----ccceEEEECCchhhhccchhhhcCCCc-eeEEECCCC
Confidence 223333333 32 1113555555544332 2333446895 679999999
Q ss_pred HHHHHH-------------HHHHhhCcCC
Q 011286 394 PCGFKM-------------LASNYLGITE 409 (489)
Q Consensus 394 ~~~~~~-------------l~~~~l~~~~ 409 (489)
+.++.. ++..|+...+
T Consensus 156 F~Efl~~~~~~~~~~~~~~~f~~Yl~~GG 184 (398)
T COG1373 156 FREFLKLKGEEIEPSKLELLFEKYLETGG 184 (398)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHhCC
Confidence 999854 6778876543
No 276
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.73 E-value=4.7e-05 Score=66.52 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=41.8
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.|.|++-+++.|++.|..++..+. -..|--+-|+||||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 578999999999999999886641 1122345599999999999999999985
No 277
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.73 E-value=0.00016 Score=66.96 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=47.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChH-----------------------HHHHHHHH-ccCCeEEEE
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNK-----------------------DLRQILIA-TENKSILVV 305 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~-----------------------~L~~l~~~-~~~~sIL~i 305 (489)
-+|+.||||+|||++|..+|..++.+++.+........+ +|..++.. ..++.+++|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 479999999999999999999998888777765543222 24444444 344668888
Q ss_pred ccchhhhh
Q 011286 306 EDIDCCLE 313 (489)
Q Consensus 306 DdiD~~~~ 313 (489)
|-+..+..
T Consensus 83 D~Lt~~~~ 90 (170)
T PRK05800 83 DCLTTWVT 90 (170)
T ss_pred hhHHHHHH
Confidence 88887754
No 278
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.72 E-value=0.00025 Score=67.96 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=30.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
|++...-++++||||||||+++..+|... +.+++.++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 56667779999999999999999988765 5566666543
No 279
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.71 E-value=0.00014 Score=70.10 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=32.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
|++...-++++||||+|||+++..+|... +..++.+++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 66777778999999999999999998754 6777777766
No 280
>PRK08118 topology modulation protein; Reviewed
Probab=97.69 E-value=3.3e-05 Score=71.32 Aligned_cols=32 Identities=34% Similarity=0.532 Sum_probs=29.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
-+++.||||+||||||+.|++.++.+++.+|.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999988763
No 281
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00054 Score=71.59 Aligned_cols=26 Identities=42% Similarity=0.699 Sum_probs=23.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.++.++|+||+|+||||++.-+|..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999876
No 282
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.67 E-value=0.00034 Score=70.35 Aligned_cols=156 Identities=22% Similarity=0.244 Sum_probs=93.3
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHH-HHH--HHcCCcEEEeecCcc-CC----
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIA-AMA--NYLNFDVYDLELSSV-EG---- 286 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~-aiA--~~l~~~~~~l~~s~~-~~---- 286 (489)
.+.|..+..+.+-+.+..-.-. .-...+++.||.|+|||.++. .++ .+.|-+++.+-+... .+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 3445555555555444322211 224689999999999999876 333 377888887765442 11
Q ss_pred ----------------------hHHHHHHHHHc------cC-CeEEEEccchhhhhhhhhHHhhhhcccccccccccCCC
Q 011286 287 ----------------------NKDLRQILIAT------EN-KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGN 337 (489)
Q Consensus 287 ----------------------~~~L~~l~~~~------~~-~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (489)
.+.+..++... ++ +.|.++||||...+
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~------------------------ 151 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP------------------------ 151 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc------------------------
Confidence 12233333222 11 34566779998753
Q ss_pred chhhHHHHHHHhhcccccCCCCceEEEEecCCCCCC---CccccCCCceeeE-EEeCCC-CHHHHHHHHHHhhCcC
Q 011286 338 RFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRL---DPALLRPGRMDVH-IHMSYC-TPCGFKMLASNYLGIT 408 (489)
Q Consensus 338 ~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~L---DpALlRpGRfd~~-I~~~~p-~~~~~~~l~~~~l~~~ 408 (489)
..+.++ |.|.+|-..+ ....+.||+.|.+-+-+ ...... ||... |+|+++ ..++...++++.+...
T Consensus 152 h~rQtl--lYnlfDisqs-~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~v~ 222 (408)
T KOG2228|consen 152 HSRQTL--LYNLFDISQS-ARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLSVP 222 (408)
T ss_pred chhhHH--HHHHHHHHhh-cCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhcCC
Confidence 122232 4566665433 24568888888776544 466666 88655 777554 5788999999988543
No 283
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.66 E-value=0.00022 Score=80.82 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=21.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
+.++|.||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 57899999999999999999876
No 284
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.63 E-value=0.00025 Score=80.62 Aligned_cols=65 Identities=14% Similarity=0.305 Sum_probs=40.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH-----cCCc----------EEEeecCccCC--------------hHHHHHHHHHcc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANY-----LNFD----------VYDLELSSVEG--------------NKDLRQILIATE 298 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~-----l~~~----------~~~l~~s~~~~--------------~~~L~~l~~~~~ 298 (489)
.+.++|+||.+.|||++.+.++-. +|.+ +++--.+.+.. -..+..++....
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~ 406 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKAD 406 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCC
Confidence 457899999999999999887643 2322 22111111111 123344455556
Q ss_pred CCeEEEEccchhhh
Q 011286 299 NKSILVVEDIDCCL 312 (489)
Q Consensus 299 ~~sIL~iDdiD~~~ 312 (489)
.+++++|||+-.-.
T Consensus 407 ~~sLvLlDE~~~Gt 420 (782)
T PRK00409 407 KNSLVLFDELGAGT 420 (782)
T ss_pred cCcEEEecCCCCCC
Confidence 89999999998643
No 285
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.63 E-value=0.00029 Score=66.97 Aligned_cols=113 Identities=21% Similarity=0.251 Sum_probs=65.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhh
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKA 323 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~ 323 (489)
|....-.++|.|+-|+|||++++.|+.+. |.=+.......+. ...+...-|+.|||++.+.. .
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~~kd~----~~~l~~~~iveldEl~~~~k-~-------- 110 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFDDKDF----LEQLQGKWIVELDELDGLSK-K-------- 110 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccCCCcHH----HHHHHHhHheeHHHHhhcch-h--------
Confidence 55555668899999999999999997762 2111222222222 23345557999999998741 0
Q ss_pred cccccccccccCCCchhhHHHHHHHhh-ccccc-------CCCCceEEEEecCCCCCC-CccccCCCceeeEEEeCC
Q 011286 324 AIPDLYRSACNQGNRFQVTLSGLLNFI-DGLWS-------SCGDERIIIFTTNHKDRL-DPALLRPGRMDVHIHMSY 391 (489)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~ls~LL~~l-dgl~s-------~~g~~~iiI~TTN~~~~L-DpALlRpGRfd~~I~~~~ 391 (489)
....+..++..- |.... ......++|+|||..+-| |+.=-| || ..|+++.
T Consensus 111 ---------------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 111 ---------------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred ---------------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 112223333221 11110 111235789999998865 566667 87 4566665
No 286
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.61 E-value=0.0004 Score=67.50 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=29.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
|++.+..++++||||||||+|+..++... +..++.++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 67778889999999999999999986543 555555543
No 287
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.61 E-value=0.00045 Score=73.15 Aligned_cols=89 Identities=13% Similarity=0.098 Sum_probs=64.5
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcEEEeecCccCChH
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSSVEGNK 288 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~~~~l~~s~~~~~~ 288 (489)
.+..++|....-+++...+...- +..-.+|++|++||||..+|++|-.... -||+.+||..+-.+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA-----------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA-----------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45677777777777766665332 2345799999999999999999988874 599999999984222
Q ss_pred HHHHHHHHc-----------------cCCeEEEEccchhh
Q 011286 289 DLRQILIAT-----------------ENKSILVVEDIDCC 311 (489)
Q Consensus 289 ~L~~l~~~~-----------------~~~sIL~iDdiD~~ 311 (489)
-=..+|... .+...||||||..+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m 247 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM 247 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccC
Confidence 222344311 23689999999987
No 288
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.60 E-value=0.00042 Score=64.18 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=45.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC-----------------------ChHHHHHHHHHccCCeEEEEcc
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-----------------------GNKDLRQILIATENKSILVVED 307 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~-----------------------~~~~L~~l~~~~~~~sIL~iDd 307 (489)
+|+.||||+|||++|..+|...+.+++.+...... ...+|.+.+...+.+.+|+||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 68999999999999999998877788777655431 1234444444434566888888
Q ss_pred chhhhh
Q 011286 308 IDCCLE 313 (489)
Q Consensus 308 iD~~~~ 313 (489)
+.....
T Consensus 82 lt~~~~ 87 (169)
T cd00544 82 LTLWVT 87 (169)
T ss_pred HhHHHH
Confidence 887764
No 289
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.59 E-value=0.00011 Score=74.43 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=57.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCcE-EEeecCcc--CChHHHHHH----------HHHc-cCCeEEEEccchh
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDV-YDLELSSV--EGNKDLRQI----------LIAT-ENKSILVVEDIDC 310 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~-~~l~~s~~--~~~~~L~~l----------~~~~-~~~sIL~iDdiD~ 310 (489)
..+++|+.||||-|+|||.|....-..+...- ..+-.... ..-+++..+ -... .+--||+|||+.-
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~V 141 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEV 141 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeee
Confidence 34678999999999999999988777664322 11111110 001111111 1111 2246999999884
Q ss_pred hhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCC
Q 011286 311 CLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNH 369 (489)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~ 369 (489)
. +-....+++.|++.|=. .+|++|+|+|.
T Consensus 142 t------------------------DI~DAMiL~rL~~~Lf~------~GV~lvaTSN~ 170 (367)
T COG1485 142 T------------------------DIADAMILGRLLEALFA------RGVVLVATSNT 170 (367)
T ss_pred c------------------------ChHHHHHHHHHHHHHHH------CCcEEEEeCCC
Confidence 3 12235677888877654 45899999995
No 290
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.59 E-value=0.00054 Score=62.16 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.--+++.||||+|||+++.-+|+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3458999999999999999999888
No 291
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.58 E-value=6.7e-05 Score=67.47 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=28.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
.++|+||||+|||++++.+|..+++++++.+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3789999999999999999999999998765
No 292
>PRK13947 shikimate kinase; Provisional
Probab=97.58 E-value=7.1e-05 Score=68.81 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=29.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
.++|.||||||||++++.+|+.+++++++.|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 58999999999999999999999999988764
No 293
>PRK03839 putative kinase; Provisional
Probab=97.56 E-value=6.7e-05 Score=69.79 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=27.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
++|.|+||+||||+++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999997764
No 294
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.55 E-value=0.0006 Score=72.34 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc
Q 011286 221 DMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV 284 (489)
Q Consensus 221 ~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~ 284 (489)
.+.+.+.+.+...+.......... ..|..++|+||||+|||+++..+|.++ +..+..+++...
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 344555555555554321111111 346789999999999999999999887 566666665544
No 295
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.55 E-value=0.0003 Score=66.84 Aligned_cols=65 Identities=17% Similarity=0.263 Sum_probs=43.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH-----cCCcEE-----------EeecCc---c--------CChHHHHHHHHHcc--
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANY-----LNFDVY-----------DLELSS---V--------EGNKDLRQILIATE-- 298 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~-----l~~~~~-----------~l~~s~---~--------~~~~~L~~l~~~~~-- 298 (489)
.+.++|.||+|+|||+|.+.|+.. .|.++- ....+. + ..-.++.+++....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKG 104 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCC
Confidence 467899999999999999999853 344331 001110 0 01144667777777
Q ss_pred CCeEEEEccchhhh
Q 011286 299 NKSILVVEDIDCCL 312 (489)
Q Consensus 299 ~~sIL~iDdiD~~~ 312 (489)
.|.+|++||.-.-.
T Consensus 105 ~p~llllDEp~~gl 118 (199)
T cd03283 105 EPVLFLLDEIFKGT 118 (199)
T ss_pred CCeEEEEecccCCC
Confidence 89999999976543
No 296
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.54 E-value=5.1e-05 Score=67.38 Aligned_cols=28 Identities=43% Similarity=0.688 Sum_probs=24.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
+++.||||+||||+|+.++..++..+++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 6899999999999999999999944443
No 297
>PRK00625 shikimate kinase; Provisional
Probab=97.53 E-value=8.3e-05 Score=69.13 Aligned_cols=31 Identities=32% Similarity=0.605 Sum_probs=29.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
.++|.|+||+|||++++.+|+.++++++++|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999999876
No 298
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.53 E-value=0.00037 Score=67.05 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=30.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---C------CcEEEeecCc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---N------FDVYDLELSS 283 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~------~~~~~l~~s~ 283 (489)
|++...-+.|+||||+|||+|+..+|... + ..++.++...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 57777779999999999999999887653 2 4556665543
No 299
>PRK05973 replicative DNA helicase; Provisional
Probab=97.53 E-value=0.00087 Score=65.36 Aligned_cols=37 Identities=22% Similarity=-0.007 Sum_probs=28.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~ 280 (489)
|.++..-+|+.|+||+|||+++..+|... |.+++.++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 56777779999999999999988776544 66655444
No 300
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.53 E-value=0.0022 Score=69.32 Aligned_cols=164 Identities=17% Similarity=0.251 Sum_probs=95.7
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCC--CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCc----c-
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAW--KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS----V- 284 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~--~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~----~- 284 (489)
-|-++.|.+.+|.-|+-. .+..-..+..-|.+. --++|+.|.||||||-+.++.|+.+...+|..--++ +
T Consensus 343 l~PsIyGhe~VK~GilL~---LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLT 419 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLS---LFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLT 419 (764)
T ss_pred hCccccchHHHHhhHHHH---HhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccce
Confidence 356777888888877432 222222222222222 225999999999999999999999988888542211 1
Q ss_pred ---CChHHHHHHHHHc-----cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc----
Q 011286 285 ---EGNKDLRQILIAT-----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG---- 352 (489)
Q Consensus 285 ---~~~~~L~~l~~~~-----~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---- 352 (489)
..++.=-....++ ....|-.|||+|.+-. ++ + -.++.+|+.
T Consensus 420 aaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~-~d-----------------------q---vAihEAMEQQtIS 472 (764)
T KOG0480|consen 420 AAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV-KD-----------------------Q---VAIHEAMEQQTIS 472 (764)
T ss_pred EEEEecCCCCceeeecCcEEEccCceEEechhcccCh-Hh-----------------------H---HHHHHHHHhheeh
Confidence 0000001111112 3578999999998832 00 1 112233321
Q ss_pred -----cccCCCCceEEEEecCCCC-------------CCCccccCCCceeeE-EEeCCCCHHHHHHHHHHhhCc
Q 011286 353 -----LWSSCGDERIIIFTTNHKD-------------RLDPALLRPGRMDVH-IHMSYCTPCGFKMLASNYLGI 407 (489)
Q Consensus 353 -----l~s~~g~~~iiI~TTN~~~-------------~LDpALlRpGRfd~~-I~~~~p~~~~~~~l~~~~l~~ 407 (489)
+..+-+-.--|++++|... .++++++. |||.. |-+..|++..=..|.++.+..
T Consensus 473 IaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 473 IAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred heecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 1111111224677777431 46889999 99974 456899988877777777654
No 301
>PRK13949 shikimate kinase; Provisional
Probab=97.51 E-value=8.8e-05 Score=68.66 Aligned_cols=31 Identities=35% Similarity=0.499 Sum_probs=29.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
.++|.||||+|||++++.+|+.++++++++|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999998876
No 302
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.51 E-value=0.0013 Score=68.74 Aligned_cols=60 Identities=17% Similarity=0.270 Sum_probs=39.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH--c--CCcEEEeecCccCChHHHHHHHHHccCCeEEEEccchhh
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANY--L--NFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCC 311 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~--l--~~~~~~l~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~~ 311 (489)
+.++++.||||||||+++.+++.+ + | .....+.+-.+- -.+.+.......+|+|||+.-+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L-~~~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI-STRQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH-HHHHHhhhccCCEEEEEcCCCC
Confidence 468999999999999999998877 2 3 111111111000 0133344556789999999975
No 303
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.51 E-value=0.00041 Score=70.60 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=44.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc---------------------CChHHHHHHH---HH
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV---------------------EGNKDLRQIL---IA 296 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~---------------------~~~~~L~~l~---~~ 296 (489)
|.+..+.++++||||||||+|+..++... +..+..++...- ...++...++ ..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56777779999999999999987655443 445555543221 1111122222 22
Q ss_pred ccCCeEEEEccchhhhh
Q 011286 297 TENKSILVVEDIDCCLE 313 (489)
Q Consensus 297 ~~~~sIL~iDdiD~~~~ 313 (489)
.....+||||-+-++.+
T Consensus 131 ~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVP 147 (321)
T ss_pred ccCCcEEEEcchhhhcc
Confidence 34678999999998864
No 304
>PTZ00202 tuzin; Provisional
Probab=97.49 E-value=0.011 Score=62.21 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=54.3
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHH
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKD 289 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~ 289 (489)
|..-.+.+|-+..-..+...+. ......++-+.|.||+|||||+|++.++..++...+.+|+.. ..+-
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~----------~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg--~eEl 325 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLR----------RLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG--TEDT 325 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHh----------ccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC--HHHH
Confidence 5556677787777666655443 123334567889999999999999999999998888888873 3444
Q ss_pred HHHHHHHcc
Q 011286 290 LRQILIATE 298 (489)
Q Consensus 290 L~~l~~~~~ 298 (489)
|+.++....
T Consensus 326 Lr~LL~ALG 334 (550)
T PTZ00202 326 LRSVVKALG 334 (550)
T ss_pred HHHHHHHcC
Confidence 555555443
No 305
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.49 E-value=0.00055 Score=72.14 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=66.5
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCCh
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGN 287 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~ 287 (489)
..+..+||....-..+++.++.-. +....+||.|.+||||..+|++|-+.. +.|++.+||+.+-..
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA-----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVA-----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHh-----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 467789998887777877776332 335689999999999999999998877 679999999988321
Q ss_pred HHHHHHH-------HH----------ccCCeEEEEccchhh
Q 011286 288 KDLRQIL-------IA----------TENKSILVVEDIDCC 311 (489)
Q Consensus 288 ~~L~~l~-------~~----------~~~~sIL~iDdiD~~ 311 (489)
--=.++| .. ..++.-||+|||..+
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel 329 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL 329 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccC
Confidence 1112233 11 134689999999977
No 306
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.48 E-value=0.00087 Score=65.20 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=26.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~ 280 (489)
|++...-+++.||||||||+++..++..+ +..++.++
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 56777789999999999999975554433 44555444
No 307
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.00041 Score=76.62 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=41.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeec-Cc---c---CChHHH-HHHHHH-----ccCCeEEEEccchhhh
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL-SS---V---EGNKDL-RQILIA-----TENKSILVVEDIDCCL 312 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~-s~---~---~~~~~L-~~l~~~-----~~~~sIL~iDdiD~~~ 312 (489)
++||.|-||||||.|.+.+++.+...+|.--- ++ + ...+.. -+.... ...++|.+|||+|.+-
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~ 396 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN 396 (682)
T ss_pred eEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC
Confidence 48999999999999999999999887774311 11 1 000000 111111 1458999999999873
No 308
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.47 E-value=0.00055 Score=66.29 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=30.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEeecCc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELSS 283 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~~~~l~~s~ 283 (489)
|++...-+.|+||||||||+++..+|... +..++.++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 56777778999999999999999887543 24666666544
No 309
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.46 E-value=9.8e-05 Score=68.08 Aligned_cols=32 Identities=34% Similarity=0.446 Sum_probs=30.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
+.+.|.|++|+||||+.+++|+.|+++|++.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 56899999999999999999999999999886
No 310
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.45 E-value=0.00029 Score=71.66 Aligned_cols=58 Identities=26% Similarity=0.264 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 218 MDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 218 ~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
+.++.++.+.+.++..+.... -..++..+.|.|+||||||++++.+|..+|+++++++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 445666666666655443221 2455678999999999999999999999999999665
No 311
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.42 E-value=0.00034 Score=64.71 Aligned_cols=23 Identities=35% Similarity=0.739 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l 272 (489)
.++|.|+||+||||+++.+++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 37999999999999999999988
No 312
>PRK13948 shikimate kinase; Provisional
Probab=97.42 E-value=0.00018 Score=67.47 Aligned_cols=35 Identities=26% Similarity=0.151 Sum_probs=32.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
+.++.++|.|++|||||++++.+|+.++.++++.|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 34678999999999999999999999999999887
No 313
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.39 E-value=0.00015 Score=67.35 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=25.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
+++.||||+|||++++.+|..+++..+.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998765543
No 314
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.39 E-value=0.0012 Score=68.41 Aligned_cols=24 Identities=33% Similarity=0.575 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
.|++||||+|||+|++.|++....
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Confidence 789999999999999999997743
No 315
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0038 Score=60.66 Aligned_cols=126 Identities=10% Similarity=0.084 Sum_probs=93.1
Q ss_pred CceEEEECCCC-CcHHHHHHHHHHHc---------CCcEEEeecCc-------cCChHHHHHHHHHc---c---CCeEEE
Q 011286 248 KRGYLLYGPPG-TGKSSLIAAMANYL---------NFDVYDLELSS-------VEGNKDLRQILIAT---E---NKSILV 304 (489)
Q Consensus 248 ~rg~LL~GPpG-tGKTsla~aiA~~l---------~~~~~~l~~s~-------~~~~~~L~~l~~~~---~---~~sIL~ 304 (489)
...|||.|..+ +||.-++.-++..+ .-+++.+.... .-+.+.+|++.... + ..-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 35799999998 99999988877766 23556664331 22456666665443 2 357999
Q ss_pred EccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCcee
Q 011286 305 VEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMD 384 (489)
Q Consensus 305 iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd 384 (489)
|+++|.+- ....+.||..++. ++...++|++|..++.|.|.+++ |+
T Consensus 95 I~~ae~mt---------------------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrS--RC- 140 (263)
T PRK06581 95 IYSAELMN---------------------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRS--RC- 140 (263)
T ss_pred EechHHhC---------------------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhh--ce-
Confidence 99999884 2445788999887 34668889999999999999997 76
Q ss_pred eEEEeCCCCHHHHHHHHHHhhCc
Q 011286 385 VHIHMSYCTPCGFKMLASNYLGI 407 (489)
Q Consensus 385 ~~I~~~~p~~~~~~~l~~~~l~~ 407 (489)
.++.|+.|....-.+++..++..
T Consensus 141 q~i~~~~p~~~~~~e~~~~~~~p 163 (263)
T PRK06581 141 FKINVRSSILHAYNELYSQFIQP 163 (263)
T ss_pred EEEeCCCCCHHHHHHHHHHhccc
Confidence 56999999998877777766653
No 316
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.39 E-value=0.00054 Score=79.42 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=91.1
Q ss_pred CCCceEEEECCCCCcHHHH-HHHHHHHcCCcEEEeecCccCChHHHHHHHHHcc-------------C----CeEEEEcc
Q 011286 246 AWKRGYLLYGPPGTGKSSL-IAAMANYLNFDVYDLELSSVEGNKDLRQILIATE-------------N----KSILVVED 307 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsl-a~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~-------------~----~sIL~iDd 307 (489)
...|||+++||||+|||+| .-++-+++-+++..+|.+.-.........+.+.. + .-|||.||
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDe 1571 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDE 1571 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeec
Confidence 4578999999999999984 5689999999999999988766555555554431 1 25999999
Q ss_pred chhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCC------CceEEEEecCCCCCC-----Ccc
Q 011286 308 IDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCG------DERIIIFTTNHKDRL-----DPA 376 (489)
Q Consensus 308 iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g------~~~iiI~TTN~~~~L-----DpA 376 (489)
|. + +....- .+.....+-.=|-+=.|.|++.. .++++.+++|.+... ...
T Consensus 1572 In-L-p~~~~y-----------------~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eR 1632 (3164)
T COG5245 1572 IN-L-PYGFEY-----------------YPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYER 1632 (3164)
T ss_pred cC-C-cccccc-----------------CCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHH
Confidence 99 3 211000 01111111111222245554322 348899999976432 245
Q ss_pred ccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 377 LLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 377 LlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
++| -...|+..||.-.....|...++.
T Consensus 1633 f~r---~~v~vf~~ype~~SL~~Iyea~l~ 1659 (3164)
T COG5245 1633 FIR---KPVFVFCCYPELASLRNIYEAVLM 1659 (3164)
T ss_pred Hhc---CceEEEecCcchhhHHHHHHHHHH
Confidence 554 356789999999999999887775
No 317
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.38 E-value=0.00071 Score=65.03 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=40.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHH-----HcCCcEE---------EeecCccCC-----------h---HHHHHHHHHccC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMAN-----YLNFDVY---------DLELSSVEG-----------N---KDLRQILIATEN 299 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~-----~l~~~~~---------~l~~s~~~~-----------~---~~L~~l~~~~~~ 299 (489)
++.++|.||.|+|||++.+.++. ..|..+. +=..+.+.. . ..+..++..+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 37799999999999999999883 2333221 111111111 1 223333444567
Q ss_pred CeEEEEccchhhh
Q 011286 300 KSILVVEDIDCCL 312 (489)
Q Consensus 300 ~sIL~iDdiD~~~ 312 (489)
+++++|||+..-.
T Consensus 109 ~slvllDE~~~gt 121 (213)
T cd03281 109 RSLVLIDEFGKGT 121 (213)
T ss_pred CcEEEeccccCCC
Confidence 9999999998654
No 318
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.38 E-value=0.00067 Score=69.11 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=45.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc---------------------CChHHHHHHH---HH
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV---------------------EGNKDLRQIL---IA 296 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~---------------------~~~~~L~~l~---~~ 296 (489)
|++..+-+++|||||||||+|+..+|... +..+..++...- .+.+++..++ ..
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 46666778999999999999998766443 555665554221 1122222222 22
Q ss_pred ccCCeEEEEccchhhhh
Q 011286 297 TENKSILVVEDIDCCLE 313 (489)
Q Consensus 297 ~~~~sIL~iDdiD~~~~ 313 (489)
.....+||||-+-++.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 34678999999998874
No 319
>PRK06217 hypothetical protein; Validated
Probab=97.37 E-value=0.00017 Score=67.35 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=28.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
-++|.|+||+||||+++++|..++++++++|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 3899999999999999999999999988765
No 320
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.37 E-value=0.00093 Score=64.46 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=28.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeec
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLEL 281 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~ 281 (489)
|++.+..+|+.||||||||+|+..++... |.+++.+..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF 56 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe
Confidence 67778889999999999999988765332 666665554
No 321
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.37 E-value=0.00017 Score=64.89 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=25.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
++|.||||+|||++++.++..++..+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999988766543
No 322
>PRK14532 adenylate kinase; Provisional
Probab=97.37 E-value=0.00018 Score=67.40 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=26.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
.++|.||||+||||+++.+|..+|+..++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999999877654
No 323
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.36 E-value=0.00064 Score=69.84 Aligned_cols=62 Identities=26% Similarity=0.376 Sum_probs=43.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHHHccCCeEEEEccchhh
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCC 311 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~~ 311 (489)
|+|.+.+++|||||+||||+++-.+-+.++-.++..--+.- +=.+......-|-+|||+-..
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~S------hFWLqPL~d~Ki~llDDAT~~ 319 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS------HFWLQPLADAKIALLDDATYP 319 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTTS------CGGGGGGCT-SSEEEEEE-HH
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCCC------cccccchhcCcEEEEcCCccc
Confidence 78989999999999999999999999999888876421110 011222344568889988643
No 324
>PRK14531 adenylate kinase; Provisional
Probab=97.36 E-value=0.0002 Score=66.92 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=27.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
++-++++||||+|||++++.+|..+|++.+.+
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 34699999999999999999999999877653
No 325
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.36 E-value=0.00085 Score=67.30 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=28.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc----C-CcEEEeecCc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL----N-FDVYDLELSS 283 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l----~-~~~~~l~~s~ 283 (489)
++.++|.||+|+||||++..+|.++ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4468899999999999999999876 3 5666565544
No 326
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.34 E-value=0.00069 Score=62.03 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.--+++.||+|||||+|.+++|+..
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3458999999999999999999876
No 327
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.34 E-value=0.0022 Score=63.19 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=24.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
++.-+++.||+|||||+|++.+++.+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3456999999999999999999998854
No 328
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.34 E-value=0.0019 Score=67.28 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
+.-+++.||||||||+|++.+++.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc
Confidence 44589999999999999999999864
No 329
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.33 E-value=0.0063 Score=70.46 Aligned_cols=34 Identities=32% Similarity=0.335 Sum_probs=27.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s 282 (489)
.+-++++||+|.|||+++...+...+ ++..+++.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~ 65 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLD 65 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecC
Confidence 45789999999999999999887777 66666553
No 330
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.33 E-value=0.00018 Score=65.67 Aligned_cols=28 Identities=32% Similarity=0.622 Sum_probs=24.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
++|.||||||||++++++++.++..+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999866653
No 331
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.00019 Score=64.12 Aligned_cols=41 Identities=29% Similarity=0.536 Sum_probs=32.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDL 290 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L 290 (489)
+..+|+.|-||||||+++.++|..+++..+.+ +++..+.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~vkEn~l 47 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLVKENNL 47 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHHhhhcc
Confidence 45799999999999999999999999998765 444333333
No 332
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.33 E-value=0.0002 Score=63.64 Aligned_cols=30 Identities=30% Similarity=0.497 Sum_probs=28.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
+.+.|+||||||++++.+|..++.++++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999998887
No 333
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.32 E-value=0.00045 Score=76.47 Aligned_cols=52 Identities=29% Similarity=0.331 Sum_probs=42.1
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
-+|..|+.++|+++.++.+...+. .++.++|+||||||||++++++|..+..
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~---------------~~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAK---------------QRRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHH---------------hCCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 347899999999888887654333 1247999999999999999999998853
No 334
>PRK13946 shikimate kinase; Provisional
Probab=97.32 E-value=0.0002 Score=67.02 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=31.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
.++.++|.|+||||||++++.+|+.+|+++++.|.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 35679999999999999999999999999998763
No 335
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.32 E-value=0.00061 Score=67.66 Aligned_cols=91 Identities=16% Similarity=0.352 Sum_probs=57.5
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc---EEEeec-Ccc
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLEL-SSV 284 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~---~~~l~~-s~~ 284 (489)
.+.+++++.......+.+.+.+.... ..+..+++.||+|+|||++..++..++... ++.++- .++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v-----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAV-----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCH-----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccccHhhccCchhhHHHHHHHHhhcc-----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 34488888877766666655544322 235789999999999999999999988443 443321 111
Q ss_pred -------------CChHHHHHHHHHc--cCCeEEEEccchh
Q 011286 285 -------------EGNKDLRQILIAT--ENKSILVVEDIDC 310 (489)
Q Consensus 285 -------------~~~~~L~~l~~~~--~~~sIL~iDdiD~ 310 (489)
.....+.+++..+ .+|.+|+|.||-.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 1334556666554 4589999999984
No 336
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.31 E-value=0.00025 Score=65.76 Aligned_cols=34 Identities=41% Similarity=0.690 Sum_probs=30.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
++.++|.||+|+|||++++.+|+.+++++++.|.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999999988764
No 337
>PF13479 AAA_24: AAA domain
Probab=97.31 E-value=0.00059 Score=65.54 Aligned_cols=62 Identities=27% Similarity=0.477 Sum_probs=40.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecC-------------ccCChHHHHHHHHHc----cCCeEEEEccchhh
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS-------------SVEGNKDLRQILIAT----ENKSILVVEDIDCC 311 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s-------------~~~~~~~L~~l~~~~----~~~sIL~iDdiD~~ 311 (489)
-.+|||||||+|||+++..+-+-+ +++++.+ .+.+..++.+.+... ..=-.||||-++.+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~l---~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKPL---FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCeE---EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 358999999999999998872211 2233322 123556677766443 23469999999887
Q ss_pred hh
Q 011286 312 LE 313 (489)
Q Consensus 312 ~~ 313 (489)
..
T Consensus 81 ~~ 82 (213)
T PF13479_consen 81 ED 82 (213)
T ss_pred HH
Confidence 43
No 338
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.29 E-value=0.00023 Score=66.62 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=26.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
+++.||||+|||++++.+|..+++..+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998877654
No 339
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.27 E-value=0.00096 Score=71.23 Aligned_cols=70 Identities=26% Similarity=0.343 Sum_probs=47.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC--------------------ChHHHHHHHHHc--c
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE--------------------GNKDLRQILIAT--E 298 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~--------------------~~~~L~~l~~~~--~ 298 (489)
|++...-+||+||||+|||+|+..+|... +.+++.++..+-. ....+..++... .
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 56777778999999999999999988765 5676666543310 011222333222 3
Q ss_pred CCeEEEEccchhhhh
Q 011286 299 NKSILVVEDIDCCLE 313 (489)
Q Consensus 299 ~~sIL~iDdiD~~~~ 313 (489)
++.+|+||.|..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 578999999988753
No 340
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.27 E-value=0.00015 Score=67.02 Aligned_cols=37 Identities=32% Similarity=0.489 Sum_probs=26.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc---EEEeecCcc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFD---VYDLELSSV 284 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~---~~~l~~s~~ 284 (489)
++.++++||||+|||+++++++..+..+ ++.+++...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5789999999999999999988877444 677766655
No 341
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.27 E-value=0.0024 Score=66.00 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
-.|+.||||||||+|++.+|+.+..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3699999999999999999998733
No 342
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.26 E-value=0.0011 Score=58.88 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=25.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFD 275 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 275 (489)
+.+.-++|.|+.|+|||++++++++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344568999999999999999999999753
No 343
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.26 E-value=0.00046 Score=71.66 Aligned_cols=106 Identities=16% Similarity=0.324 Sum_probs=67.1
Q ss_pred CcceEEEEEeCCCChhHHHHhhhhHHHhhhhhhhh-------------ccceEEEEeecCCCCCCCCceEcccCC--CCC
Q 011286 148 SNITFFALRFHKKHKDTVLRTYIPHILKKSKELSK-------------KKKTLKLFTLFPYRGDTEIWQSVNLDH--PAT 212 (489)
Q Consensus 148 ~~~~~~~l~~~~~~~~~vl~~yl~~v~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~w~~~~~~~--p~~ 212 (489)
.++....|+=.+-.+ .-++.+-.+|.++++.... +-+..+|-...+. -...|.=....+ ..+
T Consensus 169 G~~k~v~l~d~pl~~-~ele~ia~eIi~~a~~~~~sfIEi~r~GatVvQlrn~RIvIarPP--fSd~~EITavRPvvk~~ 245 (604)
T COG1855 169 GEWKLVRLSDKPLTR-EELEEIAREIIERAKRDPDSFIEIDRPGATVVQLRNYRIVIARPP--FSDRWEITAVRPVVKLS 245 (604)
T ss_pred CcEEEEEcCCccCCH-HHHHHHHHHHHHHHhhCcCceEEEccCCceEEEeccEEEEEecCC--CCCceEEEEEeeeEEec
Confidence 356666665443333 4567777788877655321 1122223222221 123465433332 237
Q ss_pred cccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 213 fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
+++..+++.+++++.+. .+|+|+.||||.||||+|+|+|.++..
T Consensus 246 ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~~ 289 (604)
T COG1855 246 LEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYAS 289 (604)
T ss_pred hhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHHh
Confidence 89999999999888652 369999999999999999999999843
No 344
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.25 E-value=0.00031 Score=64.61 Aligned_cols=31 Identities=29% Similarity=0.487 Sum_probs=28.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
.++|.|+||||||++++.+|..+++++++.|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5889999999999999999999999998775
No 345
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.24 E-value=0.003 Score=65.78 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=46.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC--------------------ChHHHHHHHHH--cc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE--------------------GNKDLRQILIA--TE 298 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~--------------------~~~~L~~l~~~--~~ 298 (489)
|+.+..-+||+||||+|||+|+..+|..+ +.+++.++...-. ....+..++.. ..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 56667779999999999999999888765 3456665543210 11122223322 24
Q ss_pred CCeEEEEccchhhh
Q 011286 299 NKSILVVEDIDCCL 312 (489)
Q Consensus 299 ~~sIL~iDdiD~~~ 312 (489)
++.+|+||.|..+.
T Consensus 158 ~~~lVVIDSIq~l~ 171 (372)
T cd01121 158 KPDLVIIDSIQTVY 171 (372)
T ss_pred CCcEEEEcchHHhh
Confidence 68899999999875
No 346
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.24 E-value=0.00028 Score=67.27 Aligned_cols=22 Identities=45% Similarity=0.842 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHc
Q 011286 251 YLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l 272 (489)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777776665
No 347
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0046 Score=64.43 Aligned_cols=57 Identities=21% Similarity=0.359 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 221 DMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 221 ~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
++++.+.+.+...+.....+ ...++-++|.||+|+||||++..||..+ +..+..+++
T Consensus 218 ~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 218 EVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred HHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 45555555555544432111 1224678999999999999999999877 344444444
No 348
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.21 E-value=0.0015 Score=62.13 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=41.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHH-H----cCCcE--------------EEeecCcc---------CChHHHHHHHHHccC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMAN-Y----LNFDV--------------YDLELSSV---------EGNKDLRQILIATEN 299 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~-~----l~~~~--------------~~l~~s~~---------~~~~~L~~l~~~~~~ 299 (489)
+.-++|.||.|+|||++.++|+. . .|..+ ..+...+. .....+..++.....
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~ 108 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATP 108 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccC
Confidence 35689999999999999999993 2 23211 11111110 112334455555678
Q ss_pred CeEEEEccchhhh
Q 011286 300 KSILVVEDIDCCL 312 (489)
Q Consensus 300 ~sIL~iDdiD~~~ 312 (489)
|.++++||.-.-+
T Consensus 109 ~~llllDEp~~gl 121 (202)
T cd03243 109 RSLVLIDELGRGT 121 (202)
T ss_pred CeEEEEecCCCCC
Confidence 9999999998654
No 349
>PRK06762 hypothetical protein; Provisional
Probab=97.21 E-value=0.00041 Score=63.48 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=27.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
+.-++|.|+||+||||+|+.+++.++..++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 456899999999999999999999966665554
No 350
>PRK14530 adenylate kinase; Provisional
Probab=97.20 E-value=0.00037 Score=66.91 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=27.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
..++|.||||+||||+++.+|..++++.++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3589999999999999999999999877644
No 351
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.19 E-value=0.0012 Score=65.37 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=31.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
|++....+|++||||||||+|+..+|... |.++..+++.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 56777779999999999999999876543 6677777765
No 352
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00091 Score=60.70 Aligned_cols=28 Identities=39% Similarity=0.536 Sum_probs=24.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
.....+.|.||+|+|||+|+++|+..+.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445789999999999999999999874
No 353
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.16 E-value=0.0014 Score=61.40 Aligned_cols=25 Identities=36% Similarity=0.719 Sum_probs=22.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
++-++|.||+|+||+++++.++...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3578999999999999999999986
No 354
>PF13245 AAA_19: Part of AAA domain
Probab=97.15 E-value=0.00068 Score=54.19 Aligned_cols=33 Identities=39% Similarity=0.623 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHH-HHHHHHHHHc------CCcEEEeecC
Q 011286 250 GYLLYGPPGTGKS-SLIAAMANYL------NFDVYDLELS 282 (489)
Q Consensus 250 g~LL~GPpGtGKT-sla~aiA~~l------~~~~~~l~~s 282 (489)
-+++.|||||||| ++++.++..+ +..+..+..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 3556999999999 5555666655 4445555443
No 355
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.15 E-value=0.0065 Score=61.65 Aligned_cols=30 Identities=33% Similarity=0.307 Sum_probs=26.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFD 275 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 275 (489)
..+..+-|+||=|+|||++++.+-+++...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 567789999999999999999998888554
No 356
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.14 E-value=0.0057 Score=64.88 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=27.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEeecCc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELSS 283 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l-----~~~~~~l~~s~ 283 (489)
++.++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4568999999999999999888754 34566565544
No 357
>PRK06547 hypothetical protein; Provisional
Probab=97.13 E-value=0.00057 Score=63.49 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=29.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
..+.-+++.||+|+|||++++.+|+.++.+++.++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34567889999999999999999999988877654
No 358
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.13 E-value=0.0015 Score=61.99 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.6
Q ss_pred ceEEEECCCCCcHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMA 269 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA 269 (489)
+.++|.||.|+|||+|.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999988
No 359
>PRK02496 adk adenylate kinase; Provisional
Probab=97.13 E-value=0.00041 Score=64.71 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=26.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
+++.||||+|||++++.+|..++++.+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 88999999999999999999999877654
No 360
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.12 E-value=0.0034 Score=63.77 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=70.7
Q ss_pred CceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEE
Q 011286 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVY 277 (489)
Q Consensus 201 ~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~ 277 (489)
....+...+-..|+.+++....-+.+++.-..+- ...-.+|+.|..||||-.+|+|--... ..+++
T Consensus 191 ~~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~A-----------mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFl 259 (511)
T COG3283 191 QLQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLA-----------MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFL 259 (511)
T ss_pred HHhhcccccccchHHHhhccHHHHHHHHHHHHhh-----------ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCee
Confidence 4455556667789999988776666655443322 112358999999999999999865443 67999
Q ss_pred EeecCccCChHHHHHHHHHc------------cCCeEEEEccchhhh
Q 011286 278 DLELSSVEGNKDLRQILIAT------------ENKSILVVEDIDCCL 312 (489)
Q Consensus 278 ~l~~s~~~~~~~L~~l~~~~------------~~~sIL~iDdiD~~~ 312 (489)
-++|..+-.+..=.++|... .+..-+|+|||-.+.
T Consensus 260 alNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmS 306 (511)
T COG3283 260 ALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMS 306 (511)
T ss_pred EeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcC
Confidence 99999985554445555433 345778899998773
No 361
>PRK14528 adenylate kinase; Provisional
Probab=97.12 E-value=0.00049 Score=64.66 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=26.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
.+++.||||+|||++++.+|..++++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 489999999999999999999999887654
No 362
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=97.11 E-value=0.0011 Score=67.45 Aligned_cols=139 Identities=19% Similarity=0.246 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHHHccCCe
Q 011286 222 MKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKS 301 (489)
Q Consensus 222 ~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~s 301 (489)
..+.|.+.|+.... .+|.+|.+||-||-.|||||||+|+-+.+|-....+++.. +.|.--+.-+-..-
T Consensus 137 ~~~~i~~iL~~lv~--------N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQf 204 (417)
T PF06431_consen 137 FDDVILEILKCLVE--------NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQF 204 (417)
T ss_dssp HHHHHHHHHHHHHH--------TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-S
T ss_pred hHHHHHHHHHHHhc--------CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeeceE
Confidence 34445555554443 3678899999999999999999999999988887777653 33443333345677
Q ss_pred EEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCC-----Cce-----EEEEecCCCC
Q 011286 302 ILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCG-----DER-----IIIFTTNHKD 371 (489)
Q Consensus 302 IL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g-----~~~-----iiI~TTN~~~ 371 (489)
.++|||+---... ++ . . ..+..-..|..|-..+||...-+- +.+ --|.|.|.-
T Consensus 205 mVvFEDVKGq~~~-~~----~-----L------p~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNeY- 267 (417)
T PF06431_consen 205 MVVFEDVKGQPSD-NK----D-----L------PPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNEY- 267 (417)
T ss_dssp EEEEEEE--SSTT-TT----T---------------SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----EEEEESS--
T ss_pred EEEEEecCCCcCC-CC----C-----C------CCCCCcccchhhhhhccCceeechhhhhcccccccCCCceEeeccc-
Confidence 8899998633110 00 0 0 023345667778888888532100 111 246788763
Q ss_pred CCCccccCCCceeeEEEeCC
Q 011286 372 RLDPALLRPGRMDVHIHMSY 391 (489)
Q Consensus 372 ~LDpALlRpGRfd~~I~~~~ 391 (489)
.|+..+.- ||...+.|..
T Consensus 268 ~iP~Tv~v--Rf~~~~~F~~ 285 (417)
T PF06431_consen 268 KIPQTVKV--RFCKVLDFRP 285 (417)
T ss_dssp B--HHHHT--TEEEEEE---
T ss_pred cCCcceee--eeEeeEeccc
Confidence 56778877 9999888864
No 363
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.00043 Score=62.82 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=25.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
+-+.|||||||||+++-+|+++|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 4578999999999999999999999875
No 364
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.10 E-value=0.00049 Score=63.95 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=26.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
.-+++.||||+||||+++.+|..+|+..+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3578999999999999999999998766543
No 365
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.08 E-value=0.00047 Score=63.93 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=27.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
.+-++|.||||+||||++++++..++.+++.+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~ 33 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHF 33 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCcccc
Confidence 35689999999999999999999988766544
No 366
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.06 E-value=0.003 Score=54.28 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
++++++||+|+|||.++.+.+..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888776665
No 367
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.06 E-value=0.0032 Score=64.35 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=48.3
Q ss_pred Ccc-cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-CCcEEEeecCcc
Q 011286 212 TFD-TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELSSV 284 (489)
Q Consensus 212 ~fd-~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~~~~l~~s~~ 284 (489)
-|+ .+.|.++..+++++++...-.+ +-.-++-++|.||+|+|||+|++.+.+.+ .+++|.+..+-+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g-------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm 125 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQG-------LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM 125 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhc-------cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc
Confidence 355 7889888888887755432211 22346778999999999999999999888 467787755544
No 368
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.06 E-value=0.032 Score=56.74 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=52.6
Q ss_pred CeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceE-EEEecCC---CC--CC
Q 011286 300 KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERI-IIFTTNH---KD--RL 373 (489)
Q Consensus 300 ~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~i-iI~TTN~---~~--~L 373 (489)
|.++.||++.+++....=.+... ... ....-.....|++.+.|-.+-+.+.++ .+.+|.. +. .+
T Consensus 157 PVL~avD~~n~l~~~S~Y~~~~~-------~~I---~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l 226 (309)
T PF10236_consen 157 PVLVAVDGFNALFGPSAYRDPDF-------KPI---HPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTL 226 (309)
T ss_pred ceEEEehhhHHhhCCccccCCCC-------ccc---cHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccc
Confidence 67888999999986321111100 000 112223345566664444332222333 2444432 22 45
Q ss_pred CccccC-CCc-----ee-------------eEEEeCCCCHHHHHHHHHHhhCcC
Q 011286 374 DPALLR-PGR-----MD-------------VHIHMSYCTPCGFKMLASNYLGIT 408 (489)
Q Consensus 374 DpALlR-pGR-----fd-------------~~I~~~~p~~~~~~~l~~~~l~~~ 408 (489)
+.+|.. +++ |. ..|+++..+.++.+.++..|....
T Consensus 227 ~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~ 280 (309)
T PF10236_consen 227 PVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSG 280 (309)
T ss_pred hhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCC
Confidence 666653 121 11 158999999999999998887654
No 369
>PRK04296 thymidine kinase; Provisional
Probab=97.05 E-value=0.0037 Score=58.93 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=23.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc---CCcEEEe
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL---NFDVYDL 279 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l---~~~~~~l 279 (489)
-.+++||||+|||+++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 47899999999999988877765 5565555
No 370
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.04 E-value=0.00058 Score=66.40 Aligned_cols=30 Identities=23% Similarity=0.564 Sum_probs=27.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
-++|.||||+||||+++.+|+.++++.+++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999999887755
No 371
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.04 E-value=0.001 Score=60.98 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=24.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
+.+...+.|.||+|+|||+|.+.|+...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445678999999999999999999876
No 372
>PLN02200 adenylate kinase family protein
Probab=97.04 E-value=0.00072 Score=65.96 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=26.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~ 277 (489)
+.-+++.||||+|||++++.+|..+|+..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~hi 72 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHL 72 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 456889999999999999999999987643
No 373
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.04 E-value=0.0016 Score=62.21 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=39.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH-----cCCcE---------E-----EeecCc-c--------CChHHHHHHHHHccC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANY-----LNFDV---------Y-----DLELSS-V--------EGNKDLRQILIATEN 299 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~-----l~~~~---------~-----~l~~s~-~--------~~~~~L~~l~~~~~~ 299 (489)
.+-++|.||.|+|||++.+.++.. +|..+ + .+...+ + ..-.++..++....+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~ 108 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADG 108 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCC
Confidence 456999999999999999988733 23322 1 011110 1 011234445555677
Q ss_pred CeEEEEccchhh
Q 011286 300 KSILVVEDIDCC 311 (489)
Q Consensus 300 ~sIL~iDdiD~~ 311 (489)
++++++||+..-
T Consensus 109 ~~lvllDE~~~g 120 (204)
T cd03282 109 DSLVLIDELGRG 120 (204)
T ss_pred CcEEEeccccCC
Confidence 999999998753
No 374
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.0005 Score=63.13 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=26.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
-+++.|.|||||||+++.++ .+|++++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 37899999999999999999 9999988664
No 375
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.02 E-value=0.00061 Score=65.14 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=26.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
+++.||||+|||++++.+|..+++..+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999999877653
No 376
>PRK09354 recA recombinase A; Provisional
Probab=97.00 E-value=0.0027 Score=65.25 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=43.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc---------------------CChHHHHHHH---HH
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV---------------------EGNKDLRQIL---IA 296 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~---------------------~~~~~L~~l~---~~ 296 (489)
|++..+-+++|||||||||+|+..++... +-.++.++...- .+.++...++ ..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 56666778999999999999998655332 445554443321 1111121222 22
Q ss_pred ccCCeEEEEccchhhhh
Q 011286 297 TENKSILVVEDIDCCLE 313 (489)
Q Consensus 297 ~~~~sIL~iDdiD~~~~ 313 (489)
.....+||||=|-.+.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 34678999999998864
No 377
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.99 E-value=0.018 Score=56.26 Aligned_cols=126 Identities=17% Similarity=0.260 Sum_probs=77.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC---cEEEeecCc---------------cCChHHHH-----------HHHHHc-
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNF---DVYDLELSS---------------VEGNKDLR-----------QILIAT- 297 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~---~~~~l~~s~---------------~~~~~~L~-----------~l~~~~- 297 (489)
+-.+++.||+|||||+++..+-..+.. +++.+.... +...+.+. +.....
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 446899999999999999988877643 223221110 01111221 111111
Q ss_pred ----cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCC
Q 011286 298 ----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRL 373 (489)
Q Consensus 298 ----~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~L 373 (489)
..+++|+|||+-.- ......+..+++. |- .-++-+|+++...-.|
T Consensus 93 ~~k~~~~~LiIlDD~~~~-------------------------~~k~~~l~~~~~~--gR----H~~is~i~l~Q~~~~l 141 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK-------------------------KLKSKILRQFFNN--GR----HYNISIIFLSQSYFHL 141 (241)
T ss_pred ccCCCCCeEEEEeCCCCc-------------------------hhhhHHHHHHHhc--cc----ccceEEEEEeeecccC
Confidence 12689999997421 0112345556542 21 1347788899999999
Q ss_pred CccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011286 374 DPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 407 (489)
Q Consensus 374 DpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 407 (489)
||.+.. =++.++-++ -+...++.+++++...
T Consensus 142 p~~iR~--n~~y~i~~~-~s~~dl~~i~~~~~~~ 172 (241)
T PF04665_consen 142 PPNIRS--NIDYFIIFN-NSKRDLENIYRNMNIK 172 (241)
T ss_pred CHHHhh--cceEEEEec-CcHHHHHHHHHhcccc
Confidence 999865 678888776 4777788888887643
No 378
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.99 E-value=0.00071 Score=64.91 Aligned_cols=29 Identities=28% Similarity=0.498 Sum_probs=26.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
++++||||+|||++++.+|..+++..+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999877654
No 379
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.97 E-value=0.0012 Score=51.57 Aligned_cols=29 Identities=31% Similarity=0.411 Sum_probs=23.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHc-CCcEEEe
Q 011286 251 YLLYGPPGTGKSSLIAAMANYL-NFDVYDL 279 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l-~~~~~~l 279 (489)
+.+.|+||+|||++++++++.+ +.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 5789999999999999999996 3444444
No 380
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.97 E-value=0.0034 Score=63.60 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=42.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEE----eecCccCChHHHHHHHHHccCCeEEEEccchh
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD----LELSSVEGNKDLRQILIATENKSILVVEDIDC 310 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~----l~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~ 310 (489)
......++|+|+.|+|||+++..|...+|-.... +.+.+..+. +--+.....+-+++.+|++.
T Consensus 73 ~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~---~f~~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 73 YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEH---RFGLARLEGKRAVIGDEVQK 139 (304)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCC---CchhhhhcCCEEEEecCCCC
Confidence 4556789999999999999999999988865422 112222110 11223445678899999874
No 381
>PRK14527 adenylate kinase; Provisional
Probab=96.96 E-value=0.00066 Score=63.86 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=26.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
+.-++++||||+|||++++.+|..+++..+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 4568999999999999999999999876543
No 382
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.96 E-value=0.0023 Score=57.49 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=42.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCcE--EEee------c-CccCChHHHHHHH---HHccCCeEEEEccchhhhh
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDV--YDLE------L-SSVEGNKDLRQIL---IATENKSILVVEDIDCCLE 313 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~--~~l~------~-s~~~~~~~L~~l~---~~~~~~sIL~iDdiD~~~~ 313 (489)
.....+.+.||+|+|||+|+++++..+...- +.++ . ..+ +....+++. .-..+|.|+++||-..-++
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~l-S~G~~~rv~laral~~~p~illlDEP~~~LD 102 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQL-SGGEKMRLALAKLLLENPNLLLLDEPTNHLD 102 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccC-CHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 4456789999999999999999999863210 0110 0 112 222333332 2236799999999886653
No 383
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.95 E-value=0.0021 Score=63.63 Aligned_cols=69 Identities=17% Similarity=0.295 Sum_probs=55.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHH------HHcCCcEEEeecCccCChHHHHHHHHHcc-----------------CC
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMA------NYLNFDVYDLELSSVEGNKDLRQILIATE-----------------NK 300 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA------~~l~~~~~~l~~s~~~~~~~L~~l~~~~~-----------------~~ 300 (489)
.+..+..+||.||.|.|||.|++.|- +.+.-+++.++|..+.++..+..+|...+ ..
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 34445679999999999999999874 34577899999999999988888885432 36
Q ss_pred eEEEEccchhhh
Q 011286 301 SILVVEDIDCCL 312 (489)
Q Consensus 301 sIL~iDdiD~~~ 312 (489)
..||+|||..+.
T Consensus 284 gmlfldeigelg 295 (531)
T COG4650 284 GMLFLDEIGELG 295 (531)
T ss_pred ceEehHhhhhcC
Confidence 899999999774
No 384
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.94 E-value=0.0032 Score=60.95 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=42.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHH-Hc----CCc---------EE-----EeecC-ccC--------ChHHHHHHHHHccC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMAN-YL----NFD---------VY-----DLELS-SVE--------GNKDLRQILIATEN 299 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~-~l----~~~---------~~-----~l~~s-~~~--------~~~~L~~l~~~~~~ 299 (489)
.+-++|.||.|+|||++.+.++. .+ |.. ++ .+... ++. .-.++..++..+..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 45689999999999999999987 22 221 11 11111 110 12446677777888
Q ss_pred CeEEEEccchhh
Q 011286 300 KSILVVEDIDCC 311 (489)
Q Consensus 300 ~sIL~iDdiD~~ 311 (489)
+++++|||+..-
T Consensus 111 ~sLvllDE~~~g 122 (222)
T cd03287 111 RSLVILDELGRG 122 (222)
T ss_pred CeEEEEccCCCC
Confidence 999999998753
No 385
>PRK13764 ATPase; Provisional
Probab=96.93 E-value=0.0021 Score=70.56 Aligned_cols=63 Identities=24% Similarity=0.441 Sum_probs=40.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC---CcEEEee------cCc-c------C-ChHHHHHHHHHccCCeEEEEccchh
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLE------LSS-V------E-GNKDLRQILIATENKSILVVEDIDC 310 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~---~~~~~l~------~s~-~------~-~~~~L~~l~~~~~~~sIL~iDdiD~ 310 (489)
++++|+.||||+||||+++|++.++. ..+..++ +.. + . +...+...+. ..+|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~lL-R~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADILL-LVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHHHHHHHHH-hhCCCEEEECCCCC
Confidence 57899999999999999999999885 3332321 111 1 0 1112222221 24699999999875
Q ss_pred h
Q 011286 311 C 311 (489)
Q Consensus 311 ~ 311 (489)
.
T Consensus 336 ~ 336 (602)
T PRK13764 336 T 336 (602)
T ss_pred H
Confidence 3
No 386
>PRK06696 uridine kinase; Validated
Probab=96.93 E-value=0.0033 Score=60.69 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=31.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE 285 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~ 285 (489)
+.-+.+.|+||+||||+|+.||..+ |.+++.+.+.++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4568899999999999999999999 6777777666664
No 387
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.93 E-value=0.0046 Score=61.46 Aligned_cols=87 Identities=20% Similarity=0.293 Sum_probs=53.2
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcEEEee------
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLE------ 280 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~~~~l~------ 280 (489)
+.+++++.+.++..+.+.+.+. .....+++.||+|+||||+++++..++. ..++.++
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~--------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLE--------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 3467888877776665533221 1233589999999999999999988774 2344432
Q ss_pred cCcc-----C--ChHHHHHHHHHc--cCCeEEEEccchh
Q 011286 281 LSSV-----E--GNKDLRQILIAT--ENKSILVVEDIDC 310 (489)
Q Consensus 281 ~s~~-----~--~~~~L~~l~~~~--~~~sIL~iDdiD~ 310 (489)
+..+ . ....+..++... .+|.+|+|+||..
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 1111 1 111233333333 4689999999973
No 388
>PRK04182 cytidylate kinase; Provisional
Probab=96.91 E-value=0.00088 Score=61.71 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=26.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
-++|.|+||||||++++++|..+++++++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999998876
No 389
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.90 E-value=0.0063 Score=68.82 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=41.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---C--CcEEEeecCcc----------CChHHHHHHHHHc------------cCCe
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL---N--FDVYDLELSSV----------EGNKDLRQILIAT------------ENKS 301 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l---~--~~~~~l~~s~~----------~~~~~L~~l~~~~------------~~~s 301 (489)
+-.++.|+||||||++++++...+ + ..++.+-.+.- .....+.+++... ....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 468999999999999999987665 4 45555544321 1123444555321 1247
Q ss_pred EEEEccchhh
Q 011286 302 ILVVEDIDCC 311 (489)
Q Consensus 302 IL~iDdiD~~ 311 (489)
+|+|||+..+
T Consensus 419 llIvDEaSMv 428 (720)
T TIGR01448 419 LLIVDESSMM 428 (720)
T ss_pred EEEEeccccC
Confidence 9999999876
No 390
>PRK04040 adenylate kinase; Provisional
Probab=96.90 E-value=0.001 Score=62.75 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=25.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc--CCcEE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL--NFDVY 277 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l--~~~~~ 277 (489)
+.-++++|+||||||++++.++..+ ++.++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3468999999999999999999999 55553
No 391
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.89 E-value=0.0028 Score=59.37 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=39.8
Q ss_pred EEEECCCCCcHHHHHHHHHH-----HcCCcE---------E-----EeecCcc---------CChHHHHHHHHHccCCeE
Q 011286 251 YLLYGPPGTGKSSLIAAMAN-----YLNFDV---------Y-----DLELSSV---------EGNKDLRQILIATENKSI 302 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~-----~l~~~~---------~-----~l~~s~~---------~~~~~L~~l~~~~~~~sI 302 (489)
++|+||.|+|||++.+.++- ..|..+ + .+...+. ..-..+..++.....|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999982 223322 1 1111111 112334555566668999
Q ss_pred EEEccchhhh
Q 011286 303 LVVEDIDCCL 312 (489)
Q Consensus 303 L~iDdiD~~~ 312 (489)
+++||...-.
T Consensus 82 lllDEp~~g~ 91 (185)
T smart00534 82 VLLDELGRGT 91 (185)
T ss_pred EEEecCCCCC
Confidence 9999998654
No 392
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.88 E-value=0.0076 Score=61.80 Aligned_cols=130 Identities=19% Similarity=0.240 Sum_probs=76.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCC----------------------------hHHHHHHHHHc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG----------------------------NKDLRQILIAT 297 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~----------------------------~~~L~~l~~~~ 297 (489)
..|..+.|||-.|||||.+++.+-+.++.+...+++-+.-+ -..+..+|.+.
T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~ 107 (438)
T KOG2543|consen 28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW 107 (438)
T ss_pred ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhh
Confidence 34667899999999999999999999988888776654311 01222333331
Q ss_pred ---c---CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCC
Q 011286 298 ---E---NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKD 371 (489)
Q Consensus 298 ---~---~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~ 371 (489)
. ....|++|.+|.+-+ .....+..|+..-.-+. ...+.|.+.-...
T Consensus 108 ~~~t~~d~~~~liLDnad~lrD------------------------~~a~ll~~l~~L~el~~----~~~i~iils~~~~ 159 (438)
T KOG2543|consen 108 PAATNRDQKVFLILDNADALRD------------------------MDAILLQCLFRLYELLN----EPTIVIILSAPSC 159 (438)
T ss_pred HHhhccCceEEEEEcCHHhhhc------------------------cchHHHHHHHHHHHHhC----CCceEEEEecccc
Confidence 1 246888999998842 12344555543322221 1123333332211
Q ss_pred CCCccccCCCce-eeEEEeCCCCHHHHHHHHHHh
Q 011286 372 RLDPALLRPGRM-DVHIHMSYCTPCGFKMLASNY 404 (489)
Q Consensus 372 ~LDpALlRpGRf-d~~I~~~~p~~~~~~~l~~~~ 404 (489)
. +--+.+-|-+ -..++||.++.++.++|+.+-
T Consensus 160 e-~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 160 E-KQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred H-HHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 0 1122233333 256899999999988887553
No 393
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.88 E-value=0.0031 Score=63.76 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=23.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
++++|+.||+|+|||++++++++++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999887
No 394
>PTZ00035 Rad51 protein; Provisional
Probab=96.87 E-value=0.0057 Score=62.92 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=24.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
|++...-+.++||||||||+|+..+|...
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 56666778999999999999999887543
No 395
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.86 E-value=0.0025 Score=59.01 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
+-++|.||+|+|||++++.|++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 35789999999999999999997654
No 396
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.86 E-value=0.001 Score=63.20 Aligned_cols=35 Identities=37% Similarity=0.542 Sum_probs=27.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~ 284 (489)
-++++||+|||||.++-++|+.+|.+++.+|--.+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~ 37 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQC 37 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceec
Confidence 47999999999999999999999999999886554
No 397
>PRK01184 hypothetical protein; Provisional
Probab=96.85 E-value=0.001 Score=61.92 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
-++|.||||+||||+++ ++.++|+++++.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 47899999999999887 889999888655
No 398
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.84 E-value=0.0025 Score=60.42 Aligned_cols=24 Identities=50% Similarity=0.843 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcC
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
-+++.||+|+||||++++++.++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999998884
No 399
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.84 E-value=0.00079 Score=58.13 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHc
Q 011286 251 YLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l 272 (489)
++|.|+||+||||+++.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999988
No 400
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.84 E-value=0.00076 Score=60.83 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=23.5
Q ss_pred EECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 253 LYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 253 L~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
+.||||+|||++++.||..+++..+++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~ 27 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISV 27 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceech
Confidence 579999999999999999998765543
No 401
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.84 E-value=0.0041 Score=59.87 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=38.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH-----cCCcE---------EEeecCccC-------Ch-------HHHHHHHHHccCC
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY-----LNFDV---------YDLELSSVE-------GN-------KDLRQILIATENK 300 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~-----l~~~~---------~~l~~s~~~-------~~-------~~L~~l~~~~~~~ 300 (489)
+-++|.||.|+|||++.+.+|.. .+.++ +.--...+. +. ..+..++....++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 56899999999999999998742 22221 110011111 11 1355566667789
Q ss_pred eEEEEccch
Q 011286 301 SILVVEDID 309 (489)
Q Consensus 301 sIL~iDdiD 309 (489)
++|+|||..
T Consensus 111 ~llllDEp~ 119 (216)
T cd03284 111 SLVLLDEIG 119 (216)
T ss_pred eEEEEecCC
Confidence 999999984
No 402
>PLN02199 shikimate kinase
Probab=96.82 E-value=0.0023 Score=64.09 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=30.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
++.++|.|++|+|||++++.+|+.+++++++.|
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 568999999999999999999999999999876
No 403
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.82 E-value=0.0019 Score=64.27 Aligned_cols=61 Identities=23% Similarity=0.382 Sum_probs=34.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc----------CChHHHHHHHH----H-ccCCeEEEEccchhh
Q 011286 251 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV----------EGNKDLRQILI----A-TENKSILVVEDIDCC 311 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~----------~~~~~L~~l~~----~-~~~~sIL~iDdiD~~ 311 (489)
++|+|.||+|||++++.|+.++ +..+..++-..+ ..+..++..+. . .....||++|+.--+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 7899999999999999999986 566666653322 12334443332 2 245689999988754
No 404
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.0073 Score=58.78 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.--+.+.||+|||||||.+.||...
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3448899999999999999999876
No 405
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.81 E-value=0.0012 Score=60.32 Aligned_cols=29 Identities=28% Similarity=0.612 Sum_probs=26.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
+.++|+||+|||++++.+|+.+++++++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 68999999999999999999999998754
No 406
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.80 E-value=0.0012 Score=66.47 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=26.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc-CCcEEEe
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL-NFDVYDL 279 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l-~~~~~~l 279 (489)
.-+++.|||||||||+++.++..+ +..+++.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 468899999999999999999999 6655543
No 407
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.80 E-value=0.0043 Score=61.82 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=23.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
.++++.||||+|||+|.+++|..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999999884
No 408
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.80 E-value=0.001 Score=60.80 Aligned_cols=26 Identities=38% Similarity=0.653 Sum_probs=21.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEE
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVY 277 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~ 277 (489)
|.|.|+||||||||++++|.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999999 87766
No 409
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.79 E-value=0.0024 Score=55.95 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=43.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCC--------------------cEEEeecCccCChHHHHHH--HHHccCCeEE
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNF--------------------DVYDLELSSVEGNKDLRQI--LIATENKSIL 303 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~--------------------~~~~l~~s~~~~~~~L~~l--~~~~~~~sIL 303 (489)
+...-++|+|+=|+|||++++++|..+|. +++.+|+=.+.+...+..+ +......+|.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~ 92 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGIC 92 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEE
Confidence 33456899999999999999999999954 3445555555555554443 2233557888
Q ss_pred EEccchhh
Q 011286 304 VVEDIDCC 311 (489)
Q Consensus 304 ~iDdiD~~ 311 (489)
+||=.+.+
T Consensus 93 ~IEW~e~~ 100 (123)
T PF02367_consen 93 VIEWPERL 100 (123)
T ss_dssp EEESGGGG
T ss_pred EEECcccc
Confidence 88766554
No 410
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.77 E-value=0.0049 Score=56.43 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=19.7
Q ss_pred ceEEEECCCCCcHHH-HHHHHHHHcC
Q 011286 249 RGYLLYGPPGTGKSS-LIAAMANYLN 273 (489)
Q Consensus 249 rg~LL~GPpGtGKTs-la~aiA~~l~ 273 (489)
+.+++.||+|||||. ++..+...+.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc
Confidence 589999999999999 5556555553
No 411
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.0014 Score=61.25 Aligned_cols=32 Identities=38% Similarity=0.664 Sum_probs=25.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~ 283 (489)
-+++.||||+||||+|+.||+.++ +..++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd 33 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGD 33 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhH
Confidence 478999999999999999999944 44454433
No 412
>PRK14526 adenylate kinase; Provisional
Probab=96.75 E-value=0.0014 Score=62.92 Aligned_cols=28 Identities=32% Similarity=0.704 Sum_probs=25.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
++|.||||+|||++++.+|..+++..+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 7899999999999999999999876654
No 413
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.74 E-value=0.0073 Score=60.12 Aligned_cols=62 Identities=23% Similarity=0.422 Sum_probs=47.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCC----hHHHHHHHHHc---cCCeEEEEccch
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG----NKDLRQILIAT---ENKSILVVEDID 309 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~----~~~L~~l~~~~---~~~sIL~iDdiD 309 (489)
+...||.|.+|+||+++++-.|...++.++.+..+.-.+ .++|+.++..+ ..+.+++|+|-+
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCC
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecCcc
Confidence 456899999999999999999999999999998776432 25666776555 357888888854
No 414
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.74 E-value=0.0018 Score=58.60 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=25.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011286 251 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~ 280 (489)
+++.|+||+|||++++.++..+ +.+++.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6899999999999999999998 66666554
No 415
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.0042 Score=59.64 Aligned_cols=25 Identities=36% Similarity=0.693 Sum_probs=22.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
.+.|+.||||||||++.+-+|.-+.
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhh
Confidence 4688999999999999999998763
No 416
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.0071 Score=65.21 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=41.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEeecCc--c--------------------CChHHHHHHHHHccC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELSS--V--------------------EGNKDLRQILIATEN 299 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~~~~l~~s~--~--------------------~~~~~L~~l~~~~~~ 299 (489)
++..+.|.||+|+|||+++..||..+ +..+..++... . .....+...+....+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 45678899999999999999998764 23344333221 1 122445555555556
Q ss_pred CeEEEEccchh
Q 011286 300 KSILVVEDIDC 310 (489)
Q Consensus 300 ~sIL~iDdiD~ 310 (489)
..+||||..-.
T Consensus 429 ~DLVLIDTaG~ 439 (559)
T PRK12727 429 YKLVLIDTAGM 439 (559)
T ss_pred CCEEEecCCCc
Confidence 67777777654
No 417
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.73 E-value=0.0062 Score=62.77 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=20.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHH
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMA 269 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA 269 (489)
.+|+|++|||--|||||+|--..-
T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy 135 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLMDLFY 135 (467)
T ss_pred CCCceEEEecccCcchhHHHHHHh
Confidence 348999999999999999876543
No 418
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.71 E-value=0.0067 Score=57.67 Aligned_cols=36 Identities=36% Similarity=0.356 Sum_probs=27.3
Q ss_pred cHHHHHHhC--CCCCceEEEECCCCCcHHHHHHHHHHH
Q 011286 236 RKEFYKRVG--KAWKRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 236 ~~~~y~~~g--~~~~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
+-+.-+++| +|.+.-+|+.|+.|||||-|.+.+|.=
T Consensus 14 ndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG 51 (235)
T COG2874 14 NDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYG 51 (235)
T ss_pred cHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHH
Confidence 344555664 566666889999999999999988843
No 419
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.024 Score=59.68 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=26.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeecCc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSS 283 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~s~ 283 (489)
+.-++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 4458899999999999999999754 44455444433
No 420
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.70 E-value=0.0016 Score=61.06 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=25.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
..+.|.||+|+|||||++.|+..++.+++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 358899999999999999999998876544
No 421
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.68 E-value=0.0064 Score=63.31 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
..+|+.||+|+||||+++++++++
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999887
No 422
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.68 E-value=0.012 Score=63.03 Aligned_cols=69 Identities=26% Similarity=0.297 Sum_probs=44.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC--------------------ChHHHHHHHHH--cc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE--------------------GNKDLRQILIA--TE 298 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~--------------------~~~~L~~l~~~--~~ 298 (489)
|++...-+|++|+||+|||+|+..+|..+ +.+++.++..+-. ....+..+... ..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 56777779999999999999999887755 3456555543210 01112222222 23
Q ss_pred CCeEEEEccchhhh
Q 011286 299 NKSILVVEDIDCCL 312 (489)
Q Consensus 299 ~~sIL~iDdiD~~~ 312 (489)
++.+|+||.|-.+.
T Consensus 170 ~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 170 NPQACVIDSIQTLY 183 (454)
T ss_pred CCcEEEEecchhhc
Confidence 57889999988764
No 423
>PRK08233 hypothetical protein; Provisional
Probab=96.68 E-value=0.002 Score=59.53 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=25.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC-CcEEEee
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLN-FDVYDLE 280 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~-~~~~~l~ 280 (489)
.-+.+.|+||+||||+++.+|..++ ..++.++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3467889999999999999999985 4444444
No 424
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.65 E-value=0.0062 Score=56.81 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=41.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCc--EEEeec-------Ccc-CChHHHHHHH---HHccCCeEEEEccchhhh
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFD--VYDLEL-------SSV-EGNKDLRQIL---IATENKSILVVEDIDCCL 312 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~--~~~l~~-------s~~-~~~~~L~~l~---~~~~~~sIL~iDdiD~~~ 312 (489)
+...-+.|.||.|+|||||++.|+..+..+ -+.++. ... -+...-+++. .-..+|.++++||--.-+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 345568899999999999999999876321 111111 110 1111222222 223579999999988665
Q ss_pred h
Q 011286 313 E 313 (489)
Q Consensus 313 ~ 313 (489)
+
T Consensus 103 D 103 (177)
T cd03222 103 D 103 (177)
T ss_pred C
Confidence 3
No 425
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.65 E-value=0.0096 Score=55.23 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
+.....+.|.||+|+|||+|+++||...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3445678999999999999999999876
No 426
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.64 E-value=0.0083 Score=55.42 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
....-+.|.||+|+|||+|.++||..+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 334568999999999999999999876
No 427
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.64 E-value=0.008 Score=64.94 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=24.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
|++....+|+.||||+|||+|+..++...
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~ 287 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENA 287 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56777779999999999999998777654
No 428
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.63 E-value=0.015 Score=68.92 Aligned_cols=130 Identities=16% Similarity=0.190 Sum_probs=84.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHH------------H----HHHHHHccCCeEEEEccchhhhh
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKD------------L----RQILIATENKSILVVEDIDCCLE 313 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~------------L----~~l~~~~~~~sIL~iDdiD~~~~ 313 (489)
.+|+.||..+|||+++..+|.+.|..++.++-..-..-.+ | --+.....++--|++||+....
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLAp- 968 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAP- 968 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCc-
Confidence 3899999999999999999999999999997654311111 1 1223444567788999988542
Q ss_pred hhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccC-------CCCceEEEEecCCCC------CCCccccCC
Q 011286 314 MQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSS-------CGDERIIIFTTNHKD------RLDPALLRP 380 (489)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~-------~g~~~iiI~TTN~~~------~LDpALlRp 380 (489)
...-..|+.||.--..+.-. +..+..+++|-|.|. .|..|+..
T Consensus 969 -----------------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN- 1024 (4600)
T COG5271 969 -----------------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN- 1024 (4600)
T ss_pred -----------------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh-
Confidence 22334555555432222211 122345666667553 46778877
Q ss_pred CceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 381 GRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 381 GRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
|| ..++|..-..++...|++.-..
T Consensus 1025 -RF-lE~hFddipedEle~ILh~rc~ 1048 (4600)
T COG5271 1025 -RF-LEMHFDDIPEDELEEILHGRCE 1048 (4600)
T ss_pred -hh-HhhhcccCcHHHHHHHHhccCc
Confidence 88 5578887788888888876554
No 429
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.62 E-value=0.0021 Score=63.15 Aligned_cols=31 Identities=42% Similarity=0.583 Sum_probs=26.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 251 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
++|.|+||+||||+|+++|.++ +.+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 6899999999999999999988 466666643
No 430
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.62 E-value=0.066 Score=52.35 Aligned_cols=162 Identities=20% Similarity=0.205 Sum_probs=89.2
Q ss_pred CCCce-EEEECCCCCcHHHHHHHHHHHcCCcEE---EeecCcc-------------CC-------------hHHHHHHHH
Q 011286 246 AWKRG-YLLYGPPGTGKSSLIAAMANYLNFDVY---DLELSSV-------------EG-------------NKDLRQILI 295 (489)
Q Consensus 246 ~~~rg-~LL~GPpGtGKTsla~aiA~~l~~~~~---~l~~s~~-------------~~-------------~~~L~~l~~ 295 (489)
...+| +.++|+-|+|||.+.+|+..-++-+-+ .++-..+ .+ ...|..++.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK 127 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence 33454 568999999999999988777643322 2222222 11 122333334
Q ss_pred HccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCC-C
Q 011286 296 ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRL-D 374 (489)
Q Consensus 296 ~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~L-D 374 (489)
+-.+|-++++||.+.+.. ..-..+.-|.|.-++... .-.+++|+=..--.++ -
T Consensus 128 ~g~r~v~l~vdEah~L~~------------------------~~le~Lrll~nl~~~~~~--~l~ivL~Gqp~L~~~lr~ 181 (269)
T COG3267 128 KGKRPVVLMVDEAHDLND------------------------SALEALRLLTNLEEDSSK--LLSIVLIGQPKLRPRLRL 181 (269)
T ss_pred hCCCCeEEeehhHhhhCh------------------------hHHHHHHHHHhhcccccC--ceeeeecCCcccchhhch
Confidence 445679999999998843 112233333333333211 1224444432211111 1
Q ss_pred ---ccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC--CCCChH--hHHHHHhccCCCHHHHHHHHh
Q 011286 375 ---PALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT--EHPLFL--EVEELIEKVEVTPADVAEQLM 435 (489)
Q Consensus 375 ---pALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~--~~~l~~--~i~~l~~~~~~spa~i~~~l~ 435 (489)
..+.. |++..|++++.+.++-...++..++.. ..+++. .+..+-...+-.|.-|.+.+.
T Consensus 182 ~~l~e~~~--R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 182 PVLRELEQ--RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHhhhh--eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 12335 999989999999998777777777654 333332 233333344457777776653
No 431
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.58 E-value=0.023 Score=60.16 Aligned_cols=139 Identities=20% Similarity=0.229 Sum_probs=79.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCc--cC-ChHHHHHHHH-H---------ccCCeEEEEccchhhhhhhh
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS--VE-GNKDLRQILI-A---------TENKSILVVEDIDCCLEMQD 316 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~--~~-~~~~L~~l~~-~---------~~~~sIL~iDdiD~~~~~~~ 316 (489)
+++|.|.||..||-|.+.+.+.....+|.---.+ +. +..-++.-+. + .....|.+|||+|.+... +
T Consensus 377 NicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-D 455 (721)
T KOG0482|consen 377 NICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-D 455 (721)
T ss_pred eEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-h
Confidence 4899999999999999999998877777543221 11 1111111110 0 134689999999998642 2
Q ss_pred hHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCC-------------CCCCccccCCCce
Q 011286 317 RLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHK-------------DRLDPALLRPGRM 383 (489)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~-------------~~LDpALlRpGRf 383 (489)
|.. -++.-+ .+.......|+...+. -..-|+++.|.. =.|++||++ ||
T Consensus 456 RtA-IHEVME---------QQTISIaKAGI~TtLN-------AR~sILaAANPayGRYnprrs~e~NI~LPaALLS--RF 516 (721)
T KOG0482|consen 456 RTA-IHEVME---------QQTISIAKAGINTTLN-------ARTSILAAANPAYGRYNPRRSPEQNINLPAALLS--RF 516 (721)
T ss_pred hHH-HHHHHH---------hhhhhhhhhccccchh-------hhHHhhhhcCccccccCcccChhHhcCCcHHHHH--hh
Confidence 211 000000 0111111122222221 123456666632 247899999 99
Q ss_pred eeEEEe-CCCCHHHHHHHHHHhhCcC
Q 011286 384 DVHIHM-SYCTPCGFKMLASNYLGIT 408 (489)
Q Consensus 384 d~~I~~-~~p~~~~~~~l~~~~l~~~ 408 (489)
|...-+ ..|+.+.=..|+++..-.+
T Consensus 517 Dll~Li~D~pdrd~D~~LA~HiTyVH 542 (721)
T KOG0482|consen 517 DLLWLIQDRPDRDNDLRLAQHITYVH 542 (721)
T ss_pred hhhhhhccCCcccchHHHHHHhHhhh
Confidence 987655 6788888778887755443
No 432
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.57 E-value=0.0033 Score=62.14 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=31.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~ 283 (489)
|.+.++.+|++|+||||||+++...+... |.+++.+....
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 57778889999999999999998776554 66777776554
No 433
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.0069 Score=55.93 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=32.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV 284 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~ 284 (489)
+..+.|.|.+|+||||+|.|++..| |+.+|.+|...+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 3467799999999999999999988 899999988766
No 434
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.54 E-value=0.0025 Score=59.34 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=26.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
+.|+|+||+|||++++.+++ +|+++++.|.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~ 31 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDADK 31 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecCH
Confidence 67999999999999999999 8988877653
No 435
>PLN02674 adenylate kinase
Probab=96.53 E-value=0.0027 Score=62.28 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=26.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
...++|.||||+||+|+++.||..+++..+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3568999999999999999999999876543
No 436
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.51 E-value=0.0029 Score=60.05 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=25.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDV 276 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~ 276 (489)
+.-+++.|+||+|||++++.+|..++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 35689999999999999999999988754
No 437
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.51 E-value=0.0034 Score=58.08 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
+.-++|.|+||+|||++++++++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999885
No 438
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.51 E-value=0.022 Score=61.95 Aligned_cols=121 Identities=19% Similarity=0.194 Sum_probs=0.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcCCc------------------------------------EEEeecCccCCh
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD------------------------------------VYDLELSSVEGN 287 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~------------------------------------~~~l~~s~~~~~ 287 (489)
|++...-+|++|+||||||+|+..++.+.-.. ++.++.......
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Q ss_pred ---------HHHHHHHHHc---cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccccc
Q 011286 288 ---------KDLRQILIAT---ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWS 355 (489)
Q Consensus 288 ---------~~L~~l~~~~---~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s 355 (489)
+.+...+... .++.+|+||.+..+...-+. .......+..|+..+..
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~------------------~~~~r~~l~~L~~~Lk~--- 165 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSN------------------EAVVRRELRRLFAWLKQ--- 165 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccC------------------HHHHHHHHHHHHHHHHh---
Q ss_pred CCCCceEEEEecCCCCCCCccccCCC----ceeeEEEe
Q 011286 356 SCGDERIIIFTTNHKDRLDPALLRPG----RMDVHIHM 389 (489)
Q Consensus 356 ~~g~~~iiI~TTN~~~~LDpALlRpG----Rfd~~I~~ 389 (489)
.+..+|+|+......++ +-+.| ..|.+|.+
T Consensus 166 ---~g~TvLlt~~~~~~~~~-~~~~~~~~~laDgVI~L 199 (509)
T PRK09302 166 ---KGVTAVITGERGDEYGP-LTRYGVEEFVSDCVIIL 199 (509)
T ss_pred ---CCCEEEEEECCccCcCC-ccccCceEEEeeEEEEE
No 439
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.48 E-value=0.0089 Score=60.96 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=23.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHH
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~ 270 (489)
|++...-+.++||||+|||+|+..+|.
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 566677789999999999999998875
No 440
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.48 E-value=0.004 Score=60.72 Aligned_cols=39 Identities=28% Similarity=0.259 Sum_probs=30.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEeecC
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LNFDVYDLELS 282 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~---l~~~~~~l~~s 282 (489)
|.+....+|++||||||||+|+..++.+ -|.+++.+.+.
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 6788888999999999999999865543 26667666554
No 441
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.47 E-value=0.011 Score=61.59 Aligned_cols=28 Identities=43% Similarity=0.665 Sum_probs=24.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
.+..+++.||.|||||++++++...+..
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 3567899999999999999999998844
No 442
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.44 E-value=0.0031 Score=69.05 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=29.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
-++|.|+||+|||++.+.+|+.++++++++|-
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 47899999999999999999999999999874
No 443
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.44 E-value=0.0042 Score=57.38 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=26.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
+.-+.|.|+||+|||++++++|..+ +.++..++.
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~ 40 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDG 40 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcC
Confidence 4468899999999999999999987 334444443
No 444
>PLN02165 adenylate isopentenyltransferase
Probab=96.42 E-value=0.0032 Score=64.17 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=29.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s 282 (489)
+.-++|.||+|+|||+|+.+||..++..+++.|--
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 44689999999999999999999999887766544
No 445
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.42 E-value=0.008 Score=60.99 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=30.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEeecCc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELSS 283 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~~~~l~~s~ 283 (489)
|++.+.-++++||||||||+|+..+|... +-.++.++...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56767778999999999999999887663 23566666554
No 446
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.41 E-value=0.0086 Score=57.79 Aligned_cols=63 Identities=17% Similarity=0.302 Sum_probs=41.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-----CC---------cEE-----EeecCc-cC--------ChHHHHHHHHHccC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL-----NF---------DVY-----DLELSS-VE--------GNKDLRQILIATEN 299 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l-----~~---------~~~-----~l~~s~-~~--------~~~~L~~l~~~~~~ 299 (489)
.+.++|.||.|.|||++.+.++... |. +++ .+...+ +. .-.++..++.....
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 109 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP 109 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence 4578999999999999998887542 32 111 111111 11 12445677787888
Q ss_pred CeEEEEccchh
Q 011286 300 KSILVVEDIDC 310 (489)
Q Consensus 300 ~sIL~iDdiD~ 310 (489)
+++++|||+-.
T Consensus 110 ~sLvLlDE~~~ 120 (218)
T cd03286 110 DSLVILDELGR 120 (218)
T ss_pred CeEEEEecccC
Confidence 99999999875
No 447
>PRK10646 ADP-binding protein; Provisional
Probab=96.41 E-value=0.015 Score=52.85 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
+.-++|.|+=|+|||++++++|+.+|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 346899999999999999999999964
No 448
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.40 E-value=0.0034 Score=59.58 Aligned_cols=49 Identities=24% Similarity=0.319 Sum_probs=31.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEE--EeecCccCChHHHHHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVY--DLELSSVEGNKDLRQILIA 296 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~--~l~~s~~~~~~~L~~l~~~ 296 (489)
|+-++|.||+|+||||.+.-+|.++ +..+- ..|.-.+...+.|+..-..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~ 54 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEI 54 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHH
Confidence 4678999999999999999998877 34443 3443333344455444333
No 449
>PRK14529 adenylate kinase; Provisional
Probab=96.39 E-value=0.0026 Score=61.48 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=25.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
++|.||||+||||+++.||..++++.++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 7899999999999999999999987653
No 450
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.39 E-value=0.011 Score=54.22 Aligned_cols=66 Identities=26% Similarity=0.458 Sum_probs=40.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---------------CCcEEEee----cC--ccC-ChH---HHHHHHHHcc--CC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---------------NFDVYDLE----LS--SVE-GNK---DLRQILIATE--NK 300 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---------------~~~~~~l~----~s--~~~-~~~---~L~~l~~~~~--~~ 300 (489)
++..++.||.|+|||++.++++-.+ +..+-..+ .. .+. +.. .+...+...+ .|
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~ 100 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPR 100 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCC
Confidence 3578999999999999999986443 22222222 11 111 222 2334444433 78
Q ss_pred eEEEEccchhhhh
Q 011286 301 SILVVEDIDCCLE 313 (489)
Q Consensus 301 sIL~iDdiD~~~~ 313 (489)
.+++|||+..-.+
T Consensus 101 ~llllDEp~~gld 113 (162)
T cd03227 101 PLYILDEIDRGLD 113 (162)
T ss_pred CEEEEeCCCCCCC
Confidence 9999999997653
No 451
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.0031 Score=56.89 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=34.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHH
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQI 293 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l 293 (489)
+.+-.+++-|++|||||+++++++.++++++++- .++...++..++
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dg--Dd~Hp~~NveKM 55 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDG--DDLHPPANVEKM 55 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCccccc--ccCCCHHHHHHH
Confidence 4455678899999999999999999999998754 344444444433
No 452
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.38 E-value=0.016 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l 272 (489)
.++|.|+||+|||+++.++++..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999988543
No 453
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.38 E-value=0.012 Score=59.99 Aligned_cols=25 Identities=36% Similarity=0.679 Sum_probs=22.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
++++++.||+|+|||+++++++.++
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999999874
No 454
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.37 E-value=0.16 Score=53.81 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=31.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE 285 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~ 285 (489)
+.-++|.||+|+||||++..+|.++ |..+..+++....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4568999999999999999999887 6777777665543
No 455
>PLN02459 probable adenylate kinase
Probab=96.37 E-value=0.0043 Score=61.25 Aligned_cols=30 Identities=20% Similarity=0.463 Sum_probs=26.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
.++|.||||+|||++++.+|..+++..+..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 478899999999999999999998766543
No 456
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.36 E-value=0.008 Score=62.05 Aligned_cols=26 Identities=42% Similarity=0.788 Sum_probs=22.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
+..+|+.||+|+||||+.+++++++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 45689999999999999999998774
No 457
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.35 E-value=0.0033 Score=58.25 Aligned_cols=25 Identities=28% Similarity=0.382 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
-+++.||||+|||+++++||..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998764
No 458
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.35 E-value=0.044 Score=53.97 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=23.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHH
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..+..++|.|++|+|||||+.+|.+.
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 44668999999999999999999875
No 459
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.33 E-value=0.01 Score=59.24 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=29.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV 284 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~ 284 (489)
.++-++|.||||+|||+++..+|..+ +..+..+++...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 35678899999999999999999877 556665555433
No 460
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.31 E-value=0.013 Score=59.79 Aligned_cols=53 Identities=17% Similarity=0.085 Sum_probs=37.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEeecCccCChHHHHHHHHH
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELSSVEGNKDLRQILIA 296 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~~~~l~~s~~~~~~~L~~l~~~ 296 (489)
|++...-++++||||||||.|+..+|-.. +..++.+|...--..+++.++...
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 57777778999999999999998776322 446777776553346667666544
No 461
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.31 E-value=0.015 Score=52.17 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 011286 251 YLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~ 271 (489)
+++.|+||+|||+|+.++.+.
T Consensus 3 i~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 462
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.0096 Score=61.80 Aligned_cols=38 Identities=24% Similarity=0.228 Sum_probs=29.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV 284 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~ 284 (489)
.++.++|.||+|+|||+++..+|..+ +..+..+++...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 35668999999999999999999876 555555555444
No 463
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.30 E-value=0.018 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
-+++.|+||+|||+|+.++++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 464
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.30 E-value=0.0081 Score=55.93 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=27.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~ 284 (489)
.-+.+.||+|+|||+++++++..++.. .++...+
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~--~i~gd~~ 37 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK--FIDGDDL 37 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE--EECCccc
Confidence 357899999999999999999998874 3344444
No 465
>PRK12338 hypothetical protein; Provisional
Probab=96.30 E-value=0.004 Score=63.23 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=26.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDV 276 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~ 276 (489)
|.-+++.|+||||||++++++|..++...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 45789999999999999999999998754
No 466
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.29 E-value=0.024 Score=65.85 Aligned_cols=62 Identities=18% Similarity=0.341 Sum_probs=41.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH---cCCcEEEeecCcc----------CChHHHHHHHHH-------ccCCeEEEEccch
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY---LNFDVYDLELSSV----------EGNKDLRQILIA-------TENKSILVVEDID 309 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~---l~~~~~~l~~s~~----------~~~~~L~~l~~~-------~~~~sIL~iDdiD 309 (489)
-++|.|+||||||++++++... .|+.++-+-++.. .....+..++.. .....||||||+-
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 4679999999999998877654 4777776655443 012344444432 1235799999998
Q ss_pred hh
Q 011286 310 CC 311 (489)
Q Consensus 310 ~~ 311 (489)
.+
T Consensus 444 Mv 445 (988)
T PRK13889 444 MV 445 (988)
T ss_pred cC
Confidence 76
No 467
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.28 E-value=0.0086 Score=64.71 Aligned_cols=51 Identities=20% Similarity=0.209 Sum_probs=37.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH----cCCcEEEeecCccCChHHHHHHHHH
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY----LNFDVYDLELSSVEGNKDLRQILIA 296 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~----l~~~~~~l~~s~~~~~~~L~~l~~~ 296 (489)
|++..+.+|+.||||||||+|+..++.. .|.+.+.+.+. ++.+++.+-...
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e--E~~~~l~~~~~~ 71 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE--ESPQDIIKNARS 71 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe--cCHHHHHHHHHH
Confidence 6788889999999999999999977433 26788777764 445555554433
No 468
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.28 E-value=0.0041 Score=58.93 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=27.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
-+.++||+|+|||++++.+++.+|+++++.|
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 4789999999999999999999899988654
No 469
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.28 E-value=0.01 Score=60.32 Aligned_cols=29 Identities=17% Similarity=0.479 Sum_probs=25.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
...+..+++.||+|+||||+++++++++.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 34567899999999999999999998873
No 470
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.28 E-value=0.0076 Score=61.49 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=28.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
.+.-++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 34568899999999999999999887 4455555443
No 471
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.28 E-value=0.015 Score=54.17 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHH
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~ 270 (489)
....-+.|.||.|+|||||.+++..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4455688999999999999999964
No 472
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.27 E-value=0.012 Score=66.84 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=42.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC----------ChHHHHHHHHH-------ccCCeEEEEccc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE----------GNKDLRQILIA-------TENKSILVVEDI 308 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~----------~~~~L~~l~~~-------~~~~sIL~iDdi 308 (489)
+-++|.|+||||||++++++...+ |..+..+-++... ....+.+++.. .....+|+|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 467899999999999999987654 6677766554420 11223333321 123589999999
Q ss_pred hhh
Q 011286 309 DCC 311 (489)
Q Consensus 309 D~~ 311 (489)
-.+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 876
No 473
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.27 E-value=0.011 Score=55.10 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
....-+.|.||+|+|||+|++.|+..+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568999999999999999999876
No 474
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.27 E-value=0.01 Score=59.85 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=26.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFD 275 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 275 (489)
..|--+++.||+|||||++|..+|..++.+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345678999999999999999999999887
No 475
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.27 E-value=0.071 Score=56.59 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=30.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeecCcc
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSSV 284 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~s~~ 284 (489)
.|.-+++.||||+|||+++..+|.++ |..+..+++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 35678999999999999999888774 466776766654
No 476
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.25 E-value=0.012 Score=62.56 Aligned_cols=29 Identities=34% Similarity=0.378 Sum_probs=26.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCc
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFD 275 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~ 275 (489)
.|.-++++|+||+|||+++..+|..++..
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 46789999999999999999999999985
No 477
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.25 E-value=0.0059 Score=55.68 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=29.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV 284 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~ 284 (489)
.-+.|.|.||+|||++|+++...| +.+++.+|...+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 357899999999999999999887 778888876544
No 478
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.25 E-value=0.012 Score=60.70 Aligned_cols=53 Identities=15% Similarity=0.054 Sum_probs=38.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEeecCccCChHHHHHHHHH
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELSSVEGNKDLRQILIA 296 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~~~~l~~s~~~~~~~L~~l~~~ 296 (489)
|++...-+.|+||||||||.|+..+|-.. +-.++.+|...--..+++.++...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~ 183 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAER 183 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 56766778999999999999999876332 246677776554346777776644
No 479
>PRK13808 adenylate kinase; Provisional
Probab=96.25 E-value=0.004 Score=63.60 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=25.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
++|+||||+|||+++..||..+++..+++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 88999999999999999999998866544
No 480
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.25 E-value=0.027 Score=50.71 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 011286 251 YLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~ 271 (489)
+++.|+||+|||+|+.++.+.
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999999864
No 481
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.24 E-value=0.0044 Score=58.11 Aligned_cols=26 Identities=27% Similarity=0.682 Sum_probs=23.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
+..+++.||+|+|||+++++++..+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 56799999999999999999998764
No 482
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.24 E-value=0.022 Score=61.48 Aligned_cols=87 Identities=22% Similarity=0.315 Sum_probs=54.6
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCce-EEEECCCCCcHHHHHHHHHHHcC---CcEEEeec----
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLN---FDVYDLEL---- 281 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg-~LL~GPpGtGKTsla~aiA~~l~---~~~~~l~~---- 281 (489)
+.+++++.+.++..+.+...+. .+.| +|+.||+|+||||+..++.++++ .+++.++-
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~---------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR---------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 4588888888877666544332 2345 68999999999999998888774 33444421
Q ss_pred --Ccc-----CC--hHHHHHHHHHc--cCCeEEEEccchhh
Q 011286 282 --SSV-----EG--NKDLRQILIAT--ENKSILVVEDIDCC 311 (489)
Q Consensus 282 --s~~-----~~--~~~L~~l~~~~--~~~sIL~iDdiD~~ 311 (489)
..+ .. .......+... ..|.||++.||-.-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~ 323 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDL 323 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCCH
Confidence 111 10 11222333322 46999999998754
No 483
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.24 E-value=0.0082 Score=53.03 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 011286 251 YLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~ 271 (489)
+.|.||+|+|||+|++++.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 679999999999999999875
No 484
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.24 E-value=0.0064 Score=59.07 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=32.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeecCc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSS 283 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~s~ 283 (489)
|.++..-++|.||||+|||+++..+|... +.+++.+++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 67777789999999999999988876654 77887776543
No 485
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.23 E-value=0.011 Score=60.32 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=30.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEeecCc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELSS 283 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~~~~l~~s~ 283 (489)
|++.+.-++++||||||||.++..+|-.. +..++.++...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 57777778999999999999999887653 23566666544
No 486
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.22 E-value=0.0044 Score=58.69 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=29.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc-CCcEEEeecCcc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELSSV 284 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~~~~l~~s~~ 284 (489)
..|.-+++.|+||+|||+++..+...+ +-+++.++...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~ 52 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF 52 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH
Confidence 446789999999999999999999888 667777766554
No 487
>PRK04328 hypothetical protein; Provisional
Probab=96.22 E-value=0.0069 Score=59.62 Aligned_cols=39 Identities=28% Similarity=0.256 Sum_probs=29.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEeecC
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LNFDVYDLELS 282 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~---l~~~~~~l~~s 282 (489)
|++.+..+|++||||||||+|+..++.+ -|.+.+.++..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 5777788999999999999998866543 25566666543
No 488
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.21 E-value=0.0068 Score=58.51 Aligned_cols=38 Identities=24% Similarity=0.126 Sum_probs=28.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
|.+....++++||||||||+|+..+|... +..++.++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 57777789999999999999998776532 445555544
No 489
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.21 E-value=0.027 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
-+++.|+||+|||+|+.++.+.
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5889999999999999987653
No 490
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.21 E-value=0.018 Score=56.16 Aligned_cols=64 Identities=23% Similarity=0.347 Sum_probs=41.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-----CCcE----E----------EeecC-ccC--------ChHHHHHHHHHccC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL-----NFDV----Y----------DLELS-SVE--------GNKDLRQILIATEN 299 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l-----~~~~----~----------~l~~s-~~~--------~~~~L~~l~~~~~~ 299 (489)
.+.++|+||...|||++.+.+|-.. |..+ . .+... ++. .-.++..++.....
T Consensus 43 ~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~ 122 (235)
T PF00488_consen 43 SRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATE 122 (235)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--T
T ss_pred eeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhccc
Confidence 3678999999999999999887543 3211 1 11111 111 12456677777888
Q ss_pred CeEEEEccchhh
Q 011286 300 KSILVVEDIDCC 311 (489)
Q Consensus 300 ~sIL~iDdiD~~ 311 (489)
+++|+|||+-.-
T Consensus 123 ~sLvliDE~g~g 134 (235)
T PF00488_consen 123 KSLVLIDELGRG 134 (235)
T ss_dssp TEEEEEESTTTT
T ss_pred ceeeecccccCC
Confidence 999999999854
No 491
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.21 E-value=0.0036 Score=57.47 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.1
Q ss_pred ECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 254 YGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 254 ~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
.||||||||++++++|..++..+++-|
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCc
Confidence 399999999999999999987665543
No 492
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.21 E-value=0.0064 Score=63.07 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=22.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
...+++.||+|+||||+++++++++
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999887
No 493
>PRK10436 hypothetical protein; Provisional
Probab=96.21 E-value=0.024 Score=60.75 Aligned_cols=88 Identities=20% Similarity=0.340 Sum_probs=55.1
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcEEEee------
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLE------ 280 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~~~~l~------ 280 (489)
+.+|+++.+.+...+.+.+.+. .+...+|+.||+|+||||+..++.++++ .+++.+.
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~--------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~ 259 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQ--------------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP 259 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHH--------------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc
Confidence 3488999988877665544332 1234578999999999999988877774 3344432
Q ss_pred cCcc-----C--ChHHHHHHHHHc--cCCeEEEEccchhh
Q 011286 281 LSSV-----E--GNKDLRQILIAT--ENKSILVVEDIDCC 311 (489)
Q Consensus 281 ~s~~-----~--~~~~L~~l~~~~--~~~sIL~iDdiD~~ 311 (489)
+..+ . ....+...+... ..|.||+|.||-..
T Consensus 260 l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD~ 299 (462)
T PRK10436 260 LAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDG 299 (462)
T ss_pred CCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCCH
Confidence 1111 1 112344444333 46999999998743
No 494
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.20 E-value=0.0092 Score=61.73 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=22.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.-+++.|.||||||.|+-.+|..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 457899999999999999999988
No 495
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.19 E-value=0.024 Score=62.63 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=20.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
+-++|.|+||||||+++..+...+
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l 184 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLAL 184 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999988876654
No 496
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.19 E-value=0.0056 Score=57.92 Aligned_cols=27 Identities=33% Similarity=0.422 Sum_probs=24.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
.+.-+.|.||+|+|||+|++.++..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456789999999999999999999876
No 497
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.19 E-value=0.0082 Score=66.34 Aligned_cols=28 Identities=36% Similarity=0.599 Sum_probs=24.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
++++.-+.+.||+|+|||||++.+++.+
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556679999999999999999999876
No 498
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.19 E-value=0.005 Score=57.92 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.++-+.|.||||+|||+|++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45678999999999999999998876
No 499
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.17 E-value=0.026 Score=59.89 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=39.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCc----c----CChHHHHHHHHH-----ccCCeEEEEccchhhh
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS----V----EGNKDLRQILIA-----TENKSILVVEDIDCCL 312 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~----~----~~~~~L~~l~~~-----~~~~sIL~iDdiD~~~ 312 (489)
++||.|.|||.||-|.+-+-.-...-+|.---.+ + .-+..-+....+ .....|++|||+|.+-
T Consensus 366 NVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMr 441 (729)
T KOG0481|consen 366 NVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMR 441 (729)
T ss_pred eEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccC
Confidence 4899999999999999988776666666431111 0 001111111111 1357899999999884
No 500
>PHA00350 putative assembly protein
Probab=96.16 E-value=0.014 Score=61.11 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=38.8
Q ss_pred eEEEECCCCCcHHHHHHH--HHHH--cCCcEEEeecCccCChHHH---------------------------HHHHHHcc
Q 011286 250 GYLLYGPPGTGKSSLIAA--MANY--LNFDVYDLELSSVEGNKDL---------------------------RQILIATE 298 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~a--iA~~--l~~~~~~l~~s~~~~~~~L---------------------------~~l~~~~~ 298 (489)
-+|++|+||+|||+-+-. |-.. -|..++. ++..+. -+.+ ...+.-.+
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T-NI~Gl~-le~i~~~~~~~p~~~~li~i~~~~~~~~~~~~~~~~w~p 80 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT-NIPGLN-LDVFEKVFGEFPSTARLIRIVDRNLEGFESMNRPFSWRP 80 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEEEE-CCCCCC-HHHHHhhcccCcccceeEEeccccccchhhhccccccCC
Confidence 368999999999987764 3333 3665553 333221 0111 11111134
Q ss_pred CCeEEEEccchhhhhhh
Q 011286 299 NKSILVVEDIDCCLEMQ 315 (489)
Q Consensus 299 ~~sIL~iDdiD~~~~~~ 315 (489)
..++|||||+..+++.+
T Consensus 81 ~gaLIViDEaq~~~p~r 97 (399)
T PHA00350 81 RGALYVIDEAQMIFPKR 97 (399)
T ss_pred CCCEEEEECchhhcCCC
Confidence 67999999999998744
Done!