Query 011286
Match_columns 489
No_of_seqs 416 out of 3186
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 05:00:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.6E-41 5.6E-46 350.0 21.2 212 209-435 143-363 (405)
2 4b4t_I 26S protease regulatory 100.0 3.8E-41 1.3E-45 348.2 21.6 214 207-435 175-397 (437)
3 4b4t_M 26S protease regulatory 100.0 2.5E-40 8.7E-45 345.5 23.4 214 207-435 174-396 (434)
4 4b4t_L 26S protease subunit RP 100.0 2.1E-40 7.1E-45 346.5 21.9 213 208-435 175-396 (437)
5 4b4t_K 26S protease regulatory 100.0 7.1E-40 2.4E-44 341.9 23.0 213 208-435 166-388 (428)
6 4b4t_H 26S protease regulatory 100.0 1.5E-39 5.2E-44 339.2 20.8 213 208-435 203-424 (467)
7 3cf2_A TER ATPase, transitiona 100.0 1.8E-35 6.1E-40 329.0 9.0 223 209-451 472-703 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2E-33 6.8E-38 312.6 19.0 220 210-452 200-428 (806)
9 3cf0_A Transitional endoplasmi 100.0 3E-29 1E-33 251.5 25.1 213 208-435 9-230 (301)
10 2x8a_A Nuclear valosin-contain 100.0 1.5E-29 5.2E-34 250.5 20.4 209 209-435 5-227 (274)
11 3h4m_A Proteasome-activating n 100.0 4.8E-28 1.6E-32 239.5 22.3 214 207-435 10-232 (285)
12 1xwi_A SKD1 protein; VPS4B, AA 100.0 9.2E-28 3.1E-32 243.1 22.8 207 209-435 7-224 (322)
13 2ce7_A Cell division protein F 100.0 7.3E-28 2.5E-32 255.0 21.8 211 209-435 11-230 (476)
14 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.1E-27 3.8E-32 233.3 21.5 211 210-435 2-223 (262)
15 3eie_A Vacuolar protein sortin 100.0 1.5E-27 5E-32 241.3 19.5 209 207-435 11-229 (322)
16 1lv7_A FTSH; alpha/beta domain 100.0 4E-27 1.4E-31 229.9 21.7 213 207-435 5-226 (257)
17 2qp9_X Vacuolar protein sortin 99.9 6.5E-27 2.2E-31 239.9 19.8 208 208-435 45-262 (355)
18 3hu3_A Transitional endoplasmi 99.9 2E-26 6.7E-31 245.5 19.6 209 209-435 199-416 (489)
19 2zan_A Vacuolar protein sortin 99.9 3.4E-26 1.2E-30 241.3 18.8 208 208-435 128-346 (444)
20 2r62_A Cell division protease 99.9 3.9E-27 1.3E-31 231.1 8.5 214 208-435 5-227 (268)
21 2dhr_A FTSH; AAA+ protein, hex 99.9 7.1E-26 2.4E-30 241.1 18.6 211 209-435 26-245 (499)
22 1ixz_A ATP-dependent metallopr 99.9 4.4E-25 1.5E-29 215.0 22.2 212 208-435 10-230 (254)
23 3vfd_A Spastin; ATPase, microt 99.9 2.3E-25 7.8E-30 230.9 20.7 210 207-435 108-327 (389)
24 3d8b_A Fidgetin-like protein 1 99.9 3E-25 1E-29 227.7 18.8 209 208-435 78-296 (357)
25 3b9p_A CG5977-PA, isoform A; A 99.9 1E-24 3.6E-29 216.9 18.6 209 208-435 15-234 (297)
26 1iy2_A ATP-dependent metallopr 99.9 6.3E-24 2.2E-28 209.9 21.8 212 208-435 34-254 (278)
27 3t15_A Ribulose bisphosphate c 99.9 6.4E-25 2.2E-29 219.3 13.7 170 242-430 30-220 (293)
28 1ypw_A Transitional endoplasmi 99.9 3.8E-27 1.3E-31 265.1 -5.9 212 209-435 472-692 (806)
29 1ypw_A Transitional endoplasmi 99.9 1.5E-22 5.3E-27 227.7 15.2 208 209-434 199-415 (806)
30 3pfi_A Holliday junction ATP-d 99.8 3.4E-19 1.2E-23 180.2 21.0 196 200-434 17-227 (338)
31 2c9o_A RUVB-like 1; hexameric 99.8 8.7E-21 3E-25 200.6 7.2 178 209-394 32-226 (456)
32 3syl_A Protein CBBX; photosynt 99.8 4.9E-19 1.7E-23 176.5 15.3 180 213-418 29-230 (309)
33 1hqc_A RUVB; extended AAA-ATPa 99.8 4.1E-18 1.4E-22 170.9 20.4 192 207-435 5-212 (324)
34 1g41_A Heat shock protein HSLU 99.8 8.3E-20 2.8E-24 191.0 5.3 162 215-401 16-188 (444)
35 3u61_B DNA polymerase accessor 99.8 1.6E-17 5.5E-22 167.0 17.5 196 200-451 14-220 (324)
36 2chg_A Replication factor C sm 99.7 6E-17 2.1E-21 151.6 19.8 163 201-412 6-181 (226)
37 1ofh_A ATP-dependent HSL prote 99.7 8.1E-18 2.8E-22 167.1 13.8 218 215-453 16-272 (310)
38 3uk6_A RUVB-like 2; hexameric 99.7 2.5E-16 8.6E-21 160.7 22.4 166 209-416 38-283 (368)
39 1d2n_A N-ethylmaleimide-sensit 99.7 9.2E-17 3.1E-21 157.7 18.1 167 214-403 33-210 (272)
40 1sxj_A Activator 1 95 kDa subu 99.7 1.2E-16 4.1E-21 171.5 17.9 181 199-413 26-230 (516)
41 1njg_A DNA polymerase III subu 99.7 6E-16 2.1E-20 146.3 19.8 164 201-412 12-205 (250)
42 3hws_A ATP-dependent CLP prote 99.7 4.2E-18 1.4E-22 174.5 5.0 175 216-405 17-269 (363)
43 1jbk_A CLPB protein; beta barr 99.7 4E-17 1.4E-21 149.3 9.2 153 208-401 16-194 (195)
44 3pvs_A Replication-associated 99.7 3.8E-16 1.3E-20 164.5 16.3 151 207-407 19-180 (447)
45 2chq_A Replication factor C sm 99.7 2.4E-16 8.1E-21 157.0 13.7 165 201-414 6-183 (319)
46 2v1u_A Cell division control p 99.7 2.2E-15 7.6E-20 153.7 18.0 160 212-406 17-215 (387)
47 1iqp_A RFCS; clamp loader, ext 99.7 1.1E-15 3.8E-20 152.7 15.3 165 200-413 13-190 (327)
48 1sxj_D Activator 1 41 kDa subu 99.6 1.3E-15 4.5E-20 154.0 15.8 164 200-412 25-212 (353)
49 2r44_A Uncharacterized protein 99.6 2.8E-15 9.5E-20 151.2 17.9 154 210-407 23-200 (331)
50 3m6a_A ATP-dependent protease 99.6 2.5E-16 8.7E-21 169.9 10.3 160 213-405 80-266 (543)
51 1sxj_B Activator 1 37 kDa subu 99.6 2.7E-15 9.2E-20 149.6 16.8 163 201-412 10-186 (323)
52 1jr3_A DNA polymerase III subu 99.6 6E-15 2.1E-19 150.3 19.5 160 207-412 9-198 (373)
53 3pxg_A Negative regulator of g 99.6 3.3E-15 1.1E-19 158.4 18.0 148 207-407 173-340 (468)
54 4fcw_A Chaperone protein CLPB; 99.6 1.7E-15 5.9E-20 150.8 14.6 160 214-406 17-230 (311)
55 1um8_A ATP-dependent CLP prote 99.6 9.5E-15 3.3E-19 150.1 19.0 174 215-403 22-284 (376)
56 1in4_A RUVB, holliday junction 99.6 6E-14 2E-18 142.2 24.6 191 207-434 18-223 (334)
57 1l8q_A Chromosomal replication 99.6 3.9E-15 1.3E-19 149.8 15.5 186 207-432 4-206 (324)
58 3te6_A Regulatory protein SIR3 99.6 6E-15 2.1E-19 148.3 16.1 181 245-457 42-289 (318)
59 1qvr_A CLPB protein; coiled co 99.6 9E-15 3.1E-19 165.8 19.4 158 208-406 164-346 (854)
60 2qby_B CDC6 homolog 3, cell di 99.6 2.1E-14 7.2E-19 146.9 20.4 151 214-406 20-211 (384)
61 3bos_A Putative DNA replicatio 99.6 5E-15 1.7E-19 140.9 14.6 167 207-414 21-196 (242)
62 1g8p_A Magnesium-chelatase 38 99.6 2.1E-14 7.3E-19 145.1 20.0 154 208-405 18-232 (350)
63 2p65_A Hypothetical protein PF 99.6 7.8E-16 2.7E-20 140.5 8.4 146 208-393 16-187 (187)
64 2qby_A CDC6 homolog 1, cell di 99.6 2.1E-14 7.3E-19 146.1 17.2 159 211-406 17-211 (386)
65 1r6b_X CLPA protein; AAA+, N-t 99.6 3E-14 1E-18 159.5 18.5 159 208-406 180-363 (758)
66 1sxj_E Activator 1 40 kDa subu 99.6 2.2E-14 7.6E-19 145.5 15.1 182 207-434 7-237 (354)
67 3pxi_A Negative regulator of g 99.6 1.8E-14 6.1E-19 161.4 15.5 155 214-406 491-676 (758)
68 1r6b_X CLPA protein; AAA+, N-t 99.6 2E-14 6.8E-19 160.9 15.6 154 215-406 459-667 (758)
69 3pxi_A Negative regulator of g 99.6 7.5E-14 2.6E-18 156.3 20.2 147 208-407 174-340 (758)
70 1fnn_A CDC6P, cell division co 99.5 1.2E-13 4E-18 141.3 18.7 159 212-406 15-207 (389)
71 1sxj_C Activator 1 40 kDa subu 99.5 1.5E-13 5.2E-18 139.2 19.2 164 200-412 13-189 (340)
72 2z4s_A Chromosomal replication 99.5 2.7E-14 9.1E-19 150.2 13.7 187 207-434 98-306 (440)
73 2bjv_A PSP operon transcriptio 99.5 1E-13 3.5E-18 135.2 12.5 155 211-406 3-195 (265)
74 1a5t_A Delta prime, HOLB; zinc 99.5 1.8E-12 6.2E-17 131.3 20.1 126 246-405 22-180 (334)
75 3n70_A Transport activator; si 99.4 2.6E-13 8.7E-18 120.8 7.8 132 215-392 2-144 (145)
76 1qvr_A CLPB protein; coiled co 99.4 1.4E-12 4.9E-17 147.8 13.7 156 213-406 557-771 (854)
77 3f9v_A Minichromosome maintena 99.4 7.1E-14 2.4E-18 152.2 2.1 129 250-408 329-493 (595)
78 2gno_A DNA polymerase III, gam 99.4 3.8E-12 1.3E-16 127.4 14.1 122 248-405 18-152 (305)
79 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 4.9E-12 1.7E-16 134.7 15.4 146 215-406 23-197 (500)
80 3co5_A Putative two-component 99.4 3.5E-13 1.2E-17 119.7 4.9 83 216-312 6-88 (143)
81 1ojl_A Transcriptional regulat 99.3 4.6E-12 1.6E-16 126.7 11.3 152 215-406 3-191 (304)
82 3ec2_A DNA replication protein 99.3 1.4E-12 4.9E-17 119.6 6.7 95 209-311 5-112 (180)
83 4akg_A Glutathione S-transfera 99.3 1.1E-11 3.9E-16 152.4 12.8 137 248-406 1267-1432(2695)
84 1w5s_A Origin recognition comp 99.2 6.5E-11 2.2E-15 121.9 14.3 163 212-406 20-229 (412)
85 2w58_A DNAI, primosome compone 99.2 3.6E-11 1.2E-15 112.1 8.3 97 209-311 20-127 (202)
86 1svm_A Large T antigen; AAA+ f 99.2 2.6E-11 8.9E-16 124.7 7.0 121 243-391 164-284 (377)
87 2qgz_A Helicase loader, putati 99.0 2.1E-10 7.1E-15 114.9 7.1 96 210-311 120-226 (308)
88 1tue_A Replication protein E1; 99.0 4.9E-10 1.7E-14 105.0 8.8 62 244-311 54-115 (212)
89 3k1j_A LON protease, ATP-depen 99.0 1.9E-09 6.5E-14 117.6 13.8 53 207-274 34-86 (604)
90 3cmw_A Protein RECA, recombina 99.0 6.2E-10 2.1E-14 132.0 7.9 147 211-370 1017-1218(1706)
91 2fna_A Conserved hypothetical 98.9 3.1E-08 1.1E-12 99.2 17.3 176 211-434 10-250 (357)
92 2kjq_A DNAA-related protein; s 98.9 3.7E-09 1.3E-13 94.4 7.7 58 247-311 35-95 (149)
93 2vhj_A Ntpase P4, P4; non- hyd 98.8 1.8E-09 6.2E-14 108.0 5.4 116 244-377 119-242 (331)
94 2qen_A Walker-type ATPase; unk 98.8 2.1E-07 7.2E-12 92.9 20.4 181 209-433 7-245 (350)
95 2r2a_A Uncharacterized protein 98.8 5.6E-09 1.9E-13 97.9 7.6 120 249-395 6-156 (199)
96 4akg_A Glutathione S-transfera 98.7 2.7E-08 9.1E-13 123.0 12.6 128 248-402 645-790 (2695)
97 3vkg_A Dynein heavy chain, cyt 98.7 5.1E-08 1.8E-12 121.2 14.8 135 248-406 1304-1470(3245)
98 1u0j_A DNA replication protein 98.7 3.3E-08 1.1E-12 96.5 10.1 59 246-311 102-160 (267)
99 3dzd_A Transcriptional regulat 98.5 2.5E-06 8.6E-11 87.2 16.9 152 215-406 130-317 (368)
100 1ny5_A Transcriptional regulat 98.4 3.4E-06 1.1E-10 86.9 15.3 154 213-406 136-326 (387)
101 3f8t_A Predicted ATPase involv 98.4 1.5E-07 5.2E-12 98.3 4.2 140 216-396 215-385 (506)
102 3vkg_A Dynein heavy chain, cyt 98.4 1.8E-06 6E-11 107.7 13.5 129 248-403 604-751 (3245)
103 3cmu_A Protein RECA, recombina 98.3 9.4E-07 3.2E-11 106.3 9.3 113 245-370 1424-1563(2050)
104 1ye8_A Protein THEP1, hypothet 98.2 4.6E-06 1.6E-10 76.4 8.8 27 250-276 2-28 (178)
105 1jr3_D DNA polymerase III, del 98.1 1.6E-05 5.4E-10 80.0 12.7 126 247-409 17-159 (343)
106 1z6t_A APAF-1, apoptotic prote 97.9 0.00027 9.4E-09 76.0 17.8 50 210-270 120-169 (591)
107 2cvh_A DNA repair and recombin 97.8 8.6E-05 2.9E-09 69.0 10.1 40 244-283 16-55 (220)
108 3upu_A ATP-dependent DNA helic 97.7 0.0001 3.5E-09 77.3 10.4 69 199-282 11-83 (459)
109 3sfz_A APAF-1, apoptotic pepti 97.7 0.00098 3.4E-08 77.4 19.0 164 209-427 119-321 (1249)
110 3trf_A Shikimate kinase, SK; a 97.7 2.5E-05 8.5E-10 71.0 4.2 33 248-280 5-37 (185)
111 1n0w_A DNA repair protein RAD5 97.7 0.00018 6.2E-09 67.8 10.2 40 244-283 20-68 (243)
112 3vaa_A Shikimate kinase, SK; s 97.6 3.6E-05 1.2E-09 71.2 4.4 34 247-280 24-57 (199)
113 1qhx_A CPT, protein (chloramph 97.6 5.1E-05 1.7E-09 68.3 5.2 35 248-282 3-37 (178)
114 2rhm_A Putative kinase; P-loop 97.6 3.8E-05 1.3E-09 70.0 4.2 35 245-279 2-36 (193)
115 3kb2_A SPBC2 prophage-derived 97.6 6.4E-05 2.2E-09 67.0 5.1 32 250-281 3-34 (173)
116 2ehv_A Hypothetical protein PH 97.6 0.00042 1.4E-08 65.5 11.1 26 244-269 26-51 (251)
117 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00032 1.1E-08 65.4 10.1 37 244-280 19-58 (235)
118 2z43_A DNA repair and recombin 97.5 0.00013 4.4E-09 73.0 7.7 40 244-283 103-151 (324)
119 3hr8_A Protein RECA; alpha and 97.5 0.00022 7.5E-09 72.4 9.1 70 244-313 57-153 (356)
120 2zr9_A Protein RECA, recombina 97.5 0.00015 5.2E-09 73.5 7.7 70 244-313 57-153 (349)
121 1v5w_A DMC1, meiotic recombina 97.5 0.00018 6E-09 72.7 8.1 40 244-283 118-166 (343)
122 3iij_A Coilin-interacting nucl 97.5 6.6E-05 2.3E-09 68.0 3.8 32 248-279 11-42 (180)
123 2iyv_A Shikimate kinase, SK; t 97.4 7.1E-05 2.4E-09 67.9 4.0 31 250-280 4-34 (184)
124 1u94_A RECA protein, recombina 97.4 0.00016 5.6E-09 73.4 7.0 70 244-313 59-155 (356)
125 1via_A Shikimate kinase; struc 97.4 6.4E-05 2.2E-09 67.8 3.6 30 250-279 6-35 (175)
126 1zuh_A Shikimate kinase; alpha 97.4 7.9E-05 2.7E-09 66.6 4.1 32 249-280 8-39 (168)
127 3e1s_A Exodeoxyribonuclease V, 97.4 0.00034 1.2E-08 75.6 9.6 64 248-311 204-291 (574)
128 1kag_A SKI, shikimate kinase I 97.4 8.1E-05 2.8E-09 66.7 4.0 31 249-279 5-35 (173)
129 1y63_A LMAJ004144AAA protein; 97.4 8.4E-05 2.9E-09 67.8 4.0 33 248-280 10-43 (184)
130 3cmu_A Protein RECA, recombina 97.4 0.00036 1.2E-08 84.3 10.3 70 244-313 1077-1173(2050)
131 1xp8_A RECA protein, recombina 97.4 0.00044 1.5E-08 70.5 9.6 70 244-313 70-166 (366)
132 1pzn_A RAD51, DNA repair and r 97.4 0.00028 9.4E-09 71.5 7.4 29 244-272 127-155 (349)
133 2orw_A Thymidine kinase; TMTK, 97.3 0.00014 4.9E-09 66.7 4.7 31 249-279 4-37 (184)
134 1qf9_A UMP/CMP kinase, protein 97.3 0.00011 3.9E-09 66.5 4.0 33 247-279 5-37 (194)
135 2cdn_A Adenylate kinase; phosp 97.3 0.00015 5E-09 67.0 4.7 33 248-280 20-52 (201)
136 1e6c_A Shikimate kinase; phosp 97.3 0.00011 3.6E-09 65.8 3.7 32 249-280 3-34 (173)
137 2ze6_A Isopentenyl transferase 97.3 0.00013 4.5E-09 70.3 4.4 33 250-282 3-35 (253)
138 1tev_A UMP-CMP kinase; ploop, 97.3 0.00012 4.3E-09 66.4 3.9 32 248-279 3-34 (196)
139 3lw7_A Adenylate kinase relate 97.3 0.00013 4.6E-09 64.7 3.8 29 250-279 3-31 (179)
140 2a5y_B CED-4; apoptosis; HET: 97.3 0.007 2.4E-07 64.8 17.9 44 217-270 131-174 (549)
141 2c9o_A RUVB-like 1; hexameric 97.3 0.0012 4.2E-08 69.0 11.5 125 300-470 296-433 (456)
142 1nlf_A Regulatory protein REPA 97.3 0.00059 2E-08 66.4 8.5 29 244-272 26-54 (279)
143 2i1q_A DNA repair and recombin 97.3 0.0003 1E-08 70.0 6.4 28 244-271 94-121 (322)
144 2c95_A Adenylate kinase 1; tra 97.3 0.00015 5.2E-09 66.1 3.8 33 248-280 9-41 (196)
145 2pt5_A Shikimate kinase, SK; a 97.3 0.00016 5.5E-09 64.4 3.9 31 250-280 2-32 (168)
146 3t61_A Gluconokinase; PSI-biol 97.2 0.00018 6.3E-09 66.3 4.3 33 248-280 18-50 (202)
147 1gvn_B Zeta; postsegregational 97.2 0.00039 1.4E-08 68.4 6.9 35 247-281 32-66 (287)
148 3cm0_A Adenylate kinase; ATP-b 97.2 0.00013 4.5E-09 66.0 3.1 31 249-279 5-35 (186)
149 3be4_A Adenylate kinase; malar 97.2 0.00014 4.6E-09 68.3 3.2 31 249-279 6-36 (217)
150 1ly1_A Polynucleotide kinase; 97.2 0.00011 3.8E-09 65.9 2.4 30 248-277 2-32 (181)
151 2bwj_A Adenylate kinase 5; pho 97.2 0.00016 5.6E-09 66.0 3.6 32 248-279 12-43 (199)
152 1zp6_A Hypothetical protein AT 97.2 0.00017 5.8E-09 65.6 3.5 37 245-281 6-42 (191)
153 1kht_A Adenylate kinase; phosp 97.2 0.00016 5.4E-09 65.6 3.3 30 249-278 4-38 (192)
154 1zd8_A GTP:AMP phosphotransfer 97.2 0.00018 6E-09 67.9 3.6 32 248-279 7-38 (227)
155 3dl0_A Adenylate kinase; phosp 97.2 0.00019 6.6E-09 66.8 3.9 29 251-279 3-31 (216)
156 1aky_A Adenylate kinase; ATP:A 97.2 0.00023 7.8E-09 66.7 4.2 31 249-279 5-35 (220)
157 3fb4_A Adenylate kinase; psych 97.2 0.00021 7.2E-09 66.5 3.8 29 251-279 3-31 (216)
158 1knq_A Gluconate kinase; ALFA/ 97.2 0.00028 9.7E-09 63.3 4.4 32 248-279 8-39 (175)
159 3lda_A DNA repair protein RAD5 97.1 0.0009 3.1E-08 69.0 8.5 28 244-271 174-201 (400)
160 3io5_A Recombination and repai 97.1 0.0011 3.7E-08 66.1 8.7 69 244-313 25-125 (333)
161 1ukz_A Uridylate kinase; trans 97.1 0.00028 9.5E-09 65.0 4.2 32 249-280 16-47 (203)
162 2pez_A Bifunctional 3'-phospho 97.1 0.00043 1.5E-08 62.5 5.2 34 248-281 5-41 (179)
163 1ak2_A Adenylate kinase isoenz 97.1 0.0003 1E-08 66.6 4.3 31 249-279 17-47 (233)
164 2zts_A Putative uncharacterize 97.1 0.0016 5.5E-08 61.4 9.4 39 244-282 26-68 (251)
165 2vli_A Antibiotic resistance p 97.1 0.00027 9.3E-09 63.7 3.5 29 249-277 6-34 (183)
166 1zak_A Adenylate kinase; ATP:A 97.1 0.0002 7E-09 67.1 2.5 32 248-279 5-36 (222)
167 4eun_A Thermoresistant glucoki 97.1 0.0004 1.4E-08 64.1 4.5 31 248-278 29-59 (200)
168 2p5t_B PEZT; postsegregational 97.1 0.00048 1.6E-08 66.2 5.1 38 247-284 31-68 (253)
169 2pbr_A DTMP kinase, thymidylat 97.0 0.0005 1.7E-08 62.3 4.8 31 251-281 3-36 (195)
170 1e4v_A Adenylate kinase; trans 97.0 0.00033 1.1E-08 65.4 3.5 29 251-279 3-31 (214)
171 3crm_A TRNA delta(2)-isopenten 97.0 0.00045 1.5E-08 69.1 4.6 34 248-281 5-38 (323)
172 3tlx_A Adenylate kinase 2; str 97.0 0.00041 1.4E-08 66.4 4.2 33 247-279 28-60 (243)
173 2bbw_A Adenylate kinase 4, AK4 97.0 0.00046 1.6E-08 65.8 4.6 39 239-278 19-57 (246)
174 3cmw_A Protein RECA, recombina 97.0 0.00052 1.8E-08 82.0 5.8 70 244-313 30-126 (1706)
175 3umf_A Adenylate kinase; rossm 96.9 0.0006 2E-08 64.4 4.7 32 246-277 27-58 (217)
176 2xb4_A Adenylate kinase; ATP-b 96.9 0.00046 1.6E-08 65.0 3.6 29 251-279 3-31 (223)
177 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00029 9.9E-09 71.3 2.3 50 220-278 5-54 (359)
178 2b8t_A Thymidine kinase; deoxy 96.9 0.0047 1.6E-07 58.4 10.5 63 249-311 13-101 (223)
179 2if2_A Dephospho-COA kinase; a 96.9 0.00044 1.5E-08 63.7 3.2 31 250-281 3-33 (204)
180 3sr0_A Adenylate kinase; phosp 96.8 0.00071 2.4E-08 63.3 4.2 28 251-278 3-30 (206)
181 2plr_A DTMP kinase, probable t 96.8 0.0015 5.2E-08 60.0 6.4 31 249-279 5-37 (213)
182 1cke_A CK, MSSA, protein (cyti 96.8 0.0008 2.7E-08 62.8 4.5 31 249-279 6-36 (227)
183 3nwj_A ATSK2; P loop, shikimat 96.8 0.00061 2.1E-08 65.7 3.8 33 248-280 48-80 (250)
184 2v54_A DTMP kinase, thymidylat 96.8 0.00074 2.5E-08 61.9 4.2 33 249-281 5-38 (204)
185 2jaq_A Deoxyguanosine kinase; 96.8 0.00072 2.5E-08 61.8 4.0 28 250-277 2-29 (205)
186 2z0h_A DTMP kinase, thymidylat 96.8 0.00091 3.1E-08 60.9 4.7 31 251-281 3-36 (197)
187 1nks_A Adenylate kinase; therm 96.8 0.00037 1.3E-08 63.0 2.0 24 250-273 3-26 (194)
188 3ake_A Cytidylate kinase; CMP 96.8 0.00068 2.3E-08 62.3 3.8 31 250-280 4-34 (208)
189 1jjv_A Dephospho-COA kinase; P 96.8 0.00057 2E-08 63.1 3.2 30 250-280 4-33 (206)
190 3jvv_A Twitching mobility prot 96.8 0.0025 8.6E-08 64.6 8.2 62 248-309 123-206 (356)
191 3uie_A Adenylyl-sulfate kinase 96.8 0.0012 4.2E-08 60.7 5.3 34 247-280 24-60 (200)
192 2grj_A Dephospho-COA kinase; T 96.8 0.00073 2.5E-08 62.5 3.6 31 250-280 14-44 (192)
193 3r20_A Cytidylate kinase; stru 96.7 0.001 3.6E-08 63.4 4.6 32 248-279 9-40 (233)
194 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0012 4.1E-08 63.7 4.9 32 249-280 5-39 (260)
195 2r8r_A Sensor protein; KDPD, P 96.7 0.0014 4.9E-08 62.1 5.3 33 249-281 7-42 (228)
196 4a74_A DNA repair and recombin 96.7 0.0021 7.2E-08 59.8 6.4 29 244-272 21-49 (231)
197 1uf9_A TT1252 protein; P-loop, 96.7 0.001 3.4E-08 60.9 3.8 32 248-280 8-39 (203)
198 1g5t_A COB(I)alamin adenosyltr 96.7 0.0052 1.8E-07 56.9 8.6 111 248-391 28-179 (196)
199 4gp7_A Metallophosphoesterase; 96.7 0.0053 1.8E-07 55.1 8.4 21 247-267 8-28 (171)
200 1qde_A EIF4A, translation init 96.6 0.011 3.7E-07 54.8 10.6 58 211-271 14-75 (224)
201 4b3f_X DNA-binding protein smu 96.6 0.0038 1.3E-07 68.2 8.4 58 211-283 183-243 (646)
202 2wwf_A Thymidilate kinase, put 96.6 0.00054 1.8E-08 63.3 1.3 30 248-277 10-39 (212)
203 1kao_A RAP2A; GTP-binding prot 96.6 0.01 3.6E-07 51.3 9.6 22 250-271 5-26 (167)
204 2h92_A Cytidylate kinase; ross 96.6 0.0013 4.6E-08 61.1 4.0 32 249-280 4-35 (219)
205 2gxq_A Heat resistant RNA depe 96.5 0.0077 2.6E-07 55.0 8.9 24 249-272 39-63 (207)
206 2ce2_X GTPase HRAS; signaling 96.5 0.0063 2.2E-07 52.6 8.0 23 250-272 5-27 (166)
207 1vht_A Dephospho-COA kinase; s 96.5 0.0014 4.8E-08 61.1 3.9 31 249-280 5-35 (218)
208 1w36_D RECD, exodeoxyribonucle 96.5 0.015 5E-07 63.2 12.0 25 248-272 164-188 (608)
209 3kl4_A SRP54, signal recogniti 96.5 0.0081 2.8E-07 62.4 9.5 34 248-281 97-133 (433)
210 1q3t_A Cytidylate kinase; nucl 96.5 0.0018 6.2E-08 61.3 4.3 32 248-279 16-47 (236)
211 4e22_A Cytidylate kinase; P-lo 96.5 0.0022 7.5E-08 61.6 4.9 30 249-278 28-57 (252)
212 1kgd_A CASK, peripheral plasma 96.5 0.0019 6.5E-08 58.5 4.1 26 248-273 5-30 (180)
213 1t6n_A Probable ATP-dependent 96.4 0.011 3.9E-07 54.6 9.5 58 209-269 12-72 (220)
214 3a8t_A Adenylate isopentenyltr 96.4 0.0015 5E-08 65.7 3.5 36 249-284 41-76 (339)
215 2qt1_A Nicotinamide riboside k 96.4 0.0013 4.5E-08 60.7 2.9 33 248-280 21-54 (207)
216 1ltq_A Polynucleotide kinase; 96.4 0.0013 4.3E-08 64.5 2.9 33 248-280 2-35 (301)
217 2qor_A Guanylate kinase; phosp 96.4 0.0019 6.7E-08 59.6 4.0 29 245-273 9-37 (204)
218 3zvl_A Bifunctional polynucleo 96.4 0.0029 1E-07 65.4 5.7 43 248-292 258-300 (416)
219 1uj2_A Uridine-cytidine kinase 96.4 0.0021 7.1E-08 61.5 4.3 28 248-275 22-49 (252)
220 2iut_A DNA translocase FTSK; n 96.4 0.011 3.8E-07 63.3 10.2 40 360-401 378-419 (574)
221 2yvu_A Probable adenylyl-sulfa 96.4 0.0036 1.2E-07 56.7 5.5 33 248-280 13-48 (186)
222 3foz_A TRNA delta(2)-isopenten 96.4 0.0025 8.6E-08 63.2 4.7 35 247-281 9-43 (316)
223 1nrj_B SR-beta, signal recogni 96.4 0.0088 3E-07 55.1 8.2 25 248-272 12-36 (218)
224 1nn5_A Similar to deoxythymidy 96.4 0.001 3.4E-08 61.5 1.7 26 248-273 9-34 (215)
225 1rz3_A Hypothetical protein rb 96.4 0.0058 2E-07 56.3 6.9 35 248-282 22-59 (201)
226 2dr3_A UPF0273 protein PH0284; 96.3 0.0028 9.4E-08 59.6 4.6 39 244-282 19-60 (247)
227 2bdt_A BH3686; alpha-beta prot 96.3 0.0024 8.1E-08 58.0 3.9 26 249-274 3-28 (189)
228 3dm5_A SRP54, signal recogniti 96.3 0.0079 2.7E-07 62.6 8.4 62 220-282 73-137 (443)
229 2r6a_A DNAB helicase, replicat 96.3 0.0085 2.9E-07 62.6 8.7 38 244-281 199-240 (454)
230 2qmh_A HPR kinase/phosphorylas 96.3 0.0021 7.1E-08 59.8 3.4 32 248-280 34-65 (205)
231 2ius_A DNA translocase FTSK; n 96.3 0.024 8.2E-07 60.1 12.0 41 360-402 332-374 (512)
232 2j41_A Guanylate kinase; GMP, 96.3 0.0022 7.7E-08 58.7 3.6 27 246-272 4-30 (207)
233 1vec_A ATP-dependent RNA helic 96.3 0.017 5.7E-07 52.7 9.4 18 249-266 41-58 (206)
234 2f6r_A COA synthase, bifunctio 96.2 0.0024 8.3E-08 62.4 3.6 31 249-280 76-106 (281)
235 1m7g_A Adenylylsulfate kinase; 96.2 0.0034 1.2E-07 58.2 4.5 35 246-280 23-61 (211)
236 3c8u_A Fructokinase; YP_612366 96.2 0.004 1.4E-07 57.7 4.9 27 247-273 21-47 (208)
237 3d3q_A TRNA delta(2)-isopenten 96.2 0.0028 9.5E-08 63.8 4.0 33 249-281 8-40 (340)
238 1z0j_A RAB-22, RAS-related pro 96.2 0.006 2E-07 53.3 5.7 23 250-272 8-30 (170)
239 3b6e_A Interferon-induced heli 96.2 0.013 4.3E-07 53.7 8.0 24 249-272 49-72 (216)
240 1u8z_A RAS-related protein RAL 96.1 0.02 6.9E-07 49.5 9.0 23 249-271 5-27 (168)
241 3tau_A Guanylate kinase, GMP k 96.1 0.003 1E-07 58.6 3.7 27 248-274 8-34 (208)
242 1g41_A Heat shock protein HSLU 96.1 0.003 1E-07 65.8 4.0 95 291-402 242-346 (444)
243 1vt4_I APAF-1 related killer D 96.1 0.018 6.2E-07 65.8 10.5 55 217-283 131-191 (1221)
244 2px0_A Flagellar biosynthesis 96.1 0.014 4.7E-07 57.6 8.4 35 248-282 105-143 (296)
245 1ek0_A Protein (GTP-binding pr 96.1 0.007 2.4E-07 52.7 5.7 23 250-272 5-27 (170)
246 3fdi_A Uncharacterized protein 96.1 0.0037 1.3E-07 58.0 4.0 30 249-278 7-36 (201)
247 2a9k_A RAS-related protein RAL 96.1 0.025 8.5E-07 50.1 9.3 23 249-271 19-41 (187)
248 3tr0_A Guanylate kinase, GMP k 96.1 0.004 1.4E-07 56.9 4.1 26 248-273 7-32 (205)
249 1w4r_A Thymidine kinase; type 96.1 0.0073 2.5E-07 55.8 5.8 64 248-311 20-103 (195)
250 2fz4_A DNA repair protein RAD2 96.0 0.01 3.5E-07 56.3 7.0 33 250-282 110-142 (237)
251 4dsu_A GTPase KRAS, isoform 2B 96.0 0.016 5.6E-07 51.4 8.0 23 250-272 6-28 (189)
252 1r8s_A ADP-ribosylation factor 96.0 0.041 1.4E-06 47.6 10.5 22 250-271 2-23 (164)
253 1tf7_A KAIC; homohexamer, hexa 96.0 0.016 5.6E-07 61.6 9.3 29 244-272 277-305 (525)
254 2pl3_A Probable ATP-dependent 96.0 0.024 8.4E-07 53.0 9.4 54 209-265 23-79 (236)
255 3bor_A Human initiation factor 96.0 0.018 6.3E-07 54.2 8.5 53 210-265 29-84 (237)
256 3exa_A TRNA delta(2)-isopenten 96.0 0.0038 1.3E-07 62.0 3.8 33 249-281 4-36 (322)
257 1c1y_A RAS-related protein RAP 96.0 0.019 6.7E-07 49.7 8.1 22 250-271 5-26 (167)
258 1hv8_A Putative ATP-dependent 96.0 0.026 9E-07 55.7 10.0 57 211-270 6-66 (367)
259 3t1o_A Gliding protein MGLA; G 96.0 0.02 6.8E-07 51.2 8.3 24 249-272 15-38 (198)
260 2bov_A RAla, RAS-related prote 95.9 0.024 8.2E-07 51.3 8.8 23 249-271 15-37 (206)
261 3a00_A Guanylate kinase, GMP k 95.9 0.0045 1.5E-07 56.2 3.6 25 249-273 2-26 (186)
262 3asz_A Uridine kinase; cytidin 95.9 0.0038 1.3E-07 57.6 3.1 31 248-278 6-38 (211)
263 2atv_A RERG, RAS-like estrogen 95.9 0.023 8E-07 51.3 8.4 25 247-271 27-51 (196)
264 3q72_A GTP-binding protein RAD 95.9 0.0079 2.7E-07 52.5 5.0 21 250-270 4-24 (166)
265 1r2q_A RAS-related protein RAB 95.9 0.01 3.5E-07 51.6 5.7 22 250-271 8-29 (170)
266 2efe_B Small GTP-binding prote 95.9 0.013 4.5E-07 51.8 6.5 23 249-271 13-35 (181)
267 2oil_A CATX-8, RAS-related pro 95.8 0.011 3.8E-07 53.2 6.0 23 249-271 26-48 (193)
268 3tkl_A RAS-related protein RAB 95.8 0.011 3.9E-07 53.0 6.0 24 249-272 17-40 (196)
269 3b9q_A Chloroplast SRP recepto 95.8 0.006 2.1E-07 60.3 4.4 53 220-272 70-124 (302)
270 2v9p_A Replication protein E1; 95.8 0.0057 1.9E-07 60.6 4.2 31 243-273 121-151 (305)
271 2oxc_A Probable ATP-dependent 95.8 0.029 9.8E-07 52.5 8.9 53 209-264 22-77 (230)
272 1htw_A HI0065; nucleotide-bind 95.8 0.0071 2.4E-07 54.0 4.4 28 245-272 30-57 (158)
273 3bc1_A RAS-related protein RAB 95.8 0.022 7.5E-07 50.7 7.7 23 249-271 12-34 (195)
274 1lvg_A Guanylate kinase, GMP k 95.8 0.005 1.7E-07 56.7 3.4 26 248-273 4-29 (198)
275 1z0f_A RAB14, member RAS oncog 95.8 0.017 5.7E-07 50.8 6.7 24 249-272 16-39 (179)
276 1ex7_A Guanylate kinase; subst 95.8 0.0065 2.2E-07 55.8 4.1 27 249-275 2-28 (186)
277 3pey_A ATP-dependent RNA helic 95.8 0.054 1.9E-06 54.0 11.3 56 211-266 5-62 (395)
278 2nzj_A GTP-binding protein REM 95.7 0.017 5.7E-07 50.7 6.4 23 249-271 5-27 (175)
279 2xau_A PRE-mRNA-splicing facto 95.7 0.028 9.7E-07 62.7 9.7 59 211-271 72-132 (773)
280 1x3s_A RAS-related protein RAB 95.7 0.024 8.3E-07 50.7 7.6 23 249-271 16-38 (195)
281 1cr0_A DNA primase/helicase; R 95.7 0.0058 2E-07 59.7 3.6 38 244-281 31-72 (296)
282 1znw_A Guanylate kinase, GMP k 95.7 0.0068 2.3E-07 56.0 3.9 28 246-273 18-45 (207)
283 3gmt_A Adenylate kinase; ssgci 95.7 0.0048 1.6E-07 58.7 2.8 29 251-279 11-39 (230)
284 3con_A GTPase NRAS; structural 95.7 0.02 6.8E-07 51.3 6.9 23 250-272 23-45 (190)
285 1x6v_B Bifunctional 3'-phospho 95.6 0.0094 3.2E-07 64.7 5.4 33 248-280 52-87 (630)
286 1z6g_A Guanylate kinase; struc 95.6 0.0068 2.3E-07 56.7 3.8 27 246-272 21-47 (218)
287 2erx_A GTP-binding protein DI- 95.6 0.015 5.1E-07 50.7 5.8 21 250-270 5-25 (172)
288 1sky_E F1-ATPase, F1-ATP synth 95.6 0.08 2.7E-06 55.4 12.1 24 249-272 152-175 (473)
289 3eph_A TRNA isopentenyltransfe 95.6 0.0069 2.4E-07 62.2 4.0 34 248-281 2-35 (409)
290 3ney_A 55 kDa erythrocyte memb 95.6 0.0087 3E-07 55.5 4.2 26 248-273 19-44 (197)
291 2v3c_C SRP54, signal recogniti 95.6 0.012 4E-07 61.2 5.7 34 248-281 99-135 (432)
292 3thx_B DNA mismatch repair pro 95.6 0.018 6.2E-07 65.2 7.6 67 246-312 671-765 (918)
293 3iuy_A Probable ATP-dependent 95.6 0.028 9.7E-07 52.2 7.8 18 248-265 57-74 (228)
294 3kkq_A RAS-related protein M-R 95.5 0.026 9E-07 50.0 7.1 23 249-271 19-41 (183)
295 1wb9_A DNA mismatch repair pro 95.5 0.031 1.1E-06 62.5 9.1 24 248-271 607-630 (800)
296 3ber_A Probable ATP-dependent 95.5 0.045 1.6E-06 52.0 9.1 52 211-265 43-97 (249)
297 3lxx_A GTPase IMAP family memb 95.5 0.03 1E-06 52.7 7.7 24 249-272 30-53 (239)
298 3bh0_A DNAB-like replicative h 95.4 0.013 4.6E-07 58.0 5.3 39 244-282 64-105 (315)
299 1vma_A Cell division protein F 95.4 0.011 3.6E-07 58.7 4.5 59 222-281 79-140 (306)
300 3dz8_A RAS-related protein RAB 95.4 0.014 4.8E-07 52.6 5.0 23 250-272 25-47 (191)
301 2eyu_A Twitching motility prot 95.4 0.01 3.4E-07 57.4 4.2 27 246-272 23-49 (261)
302 1zd9_A ADP-ribosylation factor 95.4 0.028 9.7E-07 50.4 7.0 22 250-271 24-45 (188)
303 3kw6_A 26S protease regulatory 95.4 0.017 5.8E-07 44.9 4.8 46 390-435 1-47 (78)
304 2og2_A Putative signal recogni 95.4 0.0086 2.9E-07 60.7 3.8 52 221-272 128-181 (359)
305 1q0u_A Bstdead; DEAD protein, 95.4 0.028 9.6E-07 52.0 7.0 17 249-265 42-58 (219)
306 2gk6_A Regulator of nonsense t 95.4 0.013 4.6E-07 63.7 5.5 34 249-282 196-233 (624)
307 1s96_A Guanylate kinase, GMP k 95.4 0.01 3.5E-07 55.8 4.0 29 245-273 13-41 (219)
308 4eaq_A DTMP kinase, thymidylat 95.4 0.013 4.3E-07 55.5 4.6 31 249-279 27-59 (229)
309 1gtv_A TMK, thymidylate kinase 95.4 0.0037 1.3E-07 57.6 0.8 25 250-274 2-26 (214)
310 1c9k_A COBU, adenosylcobinamid 95.3 0.015 5.1E-07 53.1 4.8 33 251-284 2-34 (180)
311 3hdt_A Putative kinase; struct 95.3 0.0094 3.2E-07 56.3 3.6 30 249-278 15-44 (223)
312 2yhs_A FTSY, cell division pro 95.3 0.0086 2.9E-07 63.1 3.6 25 248-272 293-317 (503)
313 3fmo_B ATP-dependent RNA helic 95.3 0.14 4.9E-06 50.0 12.3 52 210-264 91-147 (300)
314 3clv_A RAB5 protein, putative; 95.3 0.03 1E-06 50.1 6.8 24 248-271 7-30 (208)
315 1p9r_A General secretion pathw 95.3 0.023 7.9E-07 58.7 6.7 50 210-273 143-192 (418)
316 1odf_A YGR205W, hypothetical 3 95.2 0.016 5.4E-07 57.0 5.0 29 246-274 29-57 (290)
317 3thx_A DNA mismatch repair pro 95.2 0.032 1.1E-06 63.4 8.1 65 248-312 662-754 (934)
318 1zbd_A Rabphilin-3A; G protein 95.2 0.024 8.2E-07 51.4 5.9 23 249-271 9-31 (203)
319 2h57_A ADP-ribosylation factor 95.2 0.017 5.8E-07 51.9 4.8 24 249-272 22-45 (190)
320 2hup_A RAS-related protein RAB 95.2 0.03 1E-06 51.0 6.6 23 249-271 30-52 (201)
321 2p5s_A RAS and EF-hand domain 95.2 0.03 1E-06 50.8 6.5 24 248-271 28-51 (199)
322 2i3b_A HCR-ntpase, human cance 95.2 0.011 3.6E-07 54.4 3.4 23 250-272 3-25 (189)
323 3fe2_A Probable ATP-dependent 95.2 0.057 1.9E-06 50.8 8.6 52 211-265 29-83 (242)
324 1z06_A RAS-related protein RAB 95.2 0.039 1.3E-06 49.4 7.1 23 249-271 21-43 (189)
325 3ice_A Transcription terminati 95.2 0.1 3.5E-06 53.3 10.8 25 248-272 174-198 (422)
326 1zu4_A FTSY; GTPase, signal re 95.1 0.016 5.5E-07 57.8 4.8 36 247-282 104-142 (320)
327 2ewv_A Twitching motility prot 95.1 0.014 4.8E-07 59.4 4.5 29 245-273 133-161 (372)
328 2z0m_A 337AA long hypothetical 95.1 0.085 2.9E-06 51.4 10.0 31 249-279 32-62 (337)
329 1wms_A RAB-9, RAB9, RAS-relate 95.1 0.016 5.6E-07 50.9 4.3 23 249-271 8-30 (177)
330 2va8_A SSO2462, SKI2-type heli 95.1 0.14 4.8E-06 56.2 12.8 55 211-266 8-64 (715)
331 3q85_A GTP-binding protein REM 95.1 0.013 4.6E-07 51.1 3.7 21 250-270 4-24 (169)
332 2jeo_A Uridine-cytidine kinase 95.1 0.013 4.6E-07 55.5 4.0 28 248-275 25-52 (245)
333 2hxs_A RAB-26, RAS-related pro 95.1 0.023 7.8E-07 50.0 5.3 23 249-271 7-29 (178)
334 3e70_C DPA, signal recognition 95.1 0.022 7.4E-07 57.0 5.6 27 246-272 127-153 (328)
335 2fg5_A RAB-22B, RAS-related pr 95.1 0.019 6.4E-07 51.8 4.7 23 249-271 24-46 (192)
336 2bme_A RAB4A, RAS-related prot 95.0 0.017 5.8E-07 51.4 4.2 23 249-271 11-33 (186)
337 1s2m_A Putative ATP-dependent 95.0 0.046 1.6E-06 55.1 7.9 55 209-266 19-76 (400)
338 3tqf_A HPR(Ser) kinase; transf 95.0 0.012 4.2E-07 53.3 3.0 28 248-276 16-43 (181)
339 2b6h_A ADP-ribosylation factor 94.9 0.048 1.7E-06 49.2 7.1 23 248-270 29-51 (192)
340 1a7j_A Phosphoribulokinase; tr 94.9 0.0057 1.9E-07 60.1 0.8 36 250-285 7-45 (290)
341 2y8e_A RAB-protein 6, GH09086P 94.9 0.018 6.3E-07 50.5 4.1 23 249-271 15-37 (179)
342 2ged_A SR-beta, signal recogni 94.9 0.027 9.2E-07 50.5 5.3 27 246-272 46-72 (193)
343 2gf0_A GTP-binding protein DI- 94.9 0.031 1.1E-06 50.2 5.7 23 249-271 9-31 (199)
344 3oes_A GTPase rhebl1; small GT 94.9 0.025 8.7E-07 51.3 5.2 24 249-272 25-48 (201)
345 3ly5_A ATP-dependent RNA helic 94.9 0.26 8.8E-06 47.0 12.5 18 249-266 92-109 (262)
346 2fn4_A P23, RAS-related protei 94.9 0.019 6.4E-07 50.6 4.1 23 249-271 10-32 (181)
347 2axn_A 6-phosphofructo-2-kinas 94.9 0.022 7.6E-07 60.6 5.4 33 248-280 35-70 (520)
348 2q6t_A DNAB replication FORK h 94.9 0.023 8E-07 59.0 5.4 38 244-281 196-237 (444)
349 1np6_A Molybdopterin-guanine d 94.9 0.017 5.9E-07 52.3 3.9 27 246-272 4-30 (174)
350 3tqc_A Pantothenate kinase; bi 94.9 0.025 8.6E-07 56.4 5.4 25 249-273 93-117 (321)
351 2f7s_A C25KG, RAS-related prot 94.9 0.046 1.6E-06 50.1 6.8 23 249-271 26-48 (217)
352 3lnc_A Guanylate kinase, GMP k 94.8 0.0083 2.8E-07 56.3 1.7 27 247-273 26-53 (231)
353 2wjy_A Regulator of nonsense t 94.8 0.023 7.9E-07 63.6 5.4 24 249-272 372-395 (800)
354 2g6b_A RAS-related protein RAB 94.8 0.028 9.5E-07 49.6 5.0 24 249-272 11-34 (180)
355 1xti_A Probable ATP-dependent 94.8 0.1 3.6E-06 52.0 9.8 53 211-266 8-63 (391)
356 1zj6_A ADP-ribosylation factor 94.8 0.065 2.2E-06 47.8 7.5 23 248-270 16-38 (187)
357 2zj8_A DNA helicase, putative 94.8 0.11 3.9E-06 57.1 10.9 18 248-265 39-56 (720)
358 1fzq_A ADP-ribosylation factor 94.8 0.037 1.3E-06 49.4 5.8 24 248-271 16-39 (181)
359 1rj9_A FTSY, signal recognitio 94.7 0.02 6.8E-07 56.7 4.1 25 248-272 102-126 (304)
360 2il1_A RAB12; G-protein, GDP, 94.7 0.027 9.2E-07 50.8 4.7 21 250-270 28-48 (192)
361 4dkx_A RAS-related protein RAB 94.7 0.032 1.1E-06 52.2 5.3 22 250-271 15-36 (216)
362 2fh5_B SR-beta, signal recogni 94.7 0.035 1.2E-06 50.8 5.6 25 248-272 7-31 (214)
363 1sq5_A Pantothenate kinase; P- 94.7 0.019 6.4E-07 56.7 3.8 26 248-273 80-105 (308)
364 1ewq_A DNA mismatch repair pro 94.6 0.053 1.8E-06 60.3 7.7 25 248-272 576-600 (765)
365 4i1u_A Dephospho-COA kinase; s 94.6 0.022 7.4E-07 53.3 3.7 31 250-281 11-41 (210)
366 2a5j_A RAS-related protein RAB 94.6 0.024 8.3E-07 50.9 4.0 22 250-271 23-44 (191)
367 1m8p_A Sulfate adenylyltransfe 94.6 0.022 7.5E-07 61.4 4.3 33 249-281 397-433 (573)
368 1fuu_A Yeast initiation factor 94.6 0.12 4E-06 51.6 9.5 68 201-271 11-82 (394)
369 2ew1_A RAS-related protein RAB 94.5 0.024 8.1E-07 52.0 3.9 23 249-271 27-49 (201)
370 3kta_A Chromosome segregation 94.5 0.021 7.3E-07 51.1 3.5 25 250-274 28-52 (182)
371 2j0s_A ATP-dependent RNA helic 94.5 0.15 5.2E-06 51.4 10.4 53 211-266 37-92 (410)
372 3aez_A Pantothenate kinase; tr 94.5 0.024 8.1E-07 56.3 4.2 27 247-273 89-115 (312)
373 2fu5_C RAS-related protein RAB 94.5 0.015 5E-07 51.7 2.4 23 249-271 9-31 (183)
374 4a1f_A DNAB helicase, replicat 94.5 0.032 1.1E-06 56.1 4.9 39 244-282 42-83 (338)
375 2bcg_Y Protein YP2, GTP-bindin 94.5 0.02 6.9E-07 52.1 3.3 23 249-271 9-31 (206)
376 2ocp_A DGK, deoxyguanosine kin 94.4 0.025 8.4E-07 53.5 3.9 25 249-273 3-27 (241)
377 3t34_A Dynamin-related protein 94.4 0.16 5.5E-06 51.0 10.2 21 250-270 36-56 (360)
378 1xjc_A MOBB protein homolog; s 94.4 0.04 1.4E-06 49.7 5.0 32 249-280 5-39 (169)
379 2j37_W Signal recognition part 94.4 0.025 8.5E-07 59.9 4.2 34 248-281 101-137 (504)
380 4edh_A DTMP kinase, thymidylat 94.3 0.034 1.2E-06 51.9 4.6 31 249-279 7-40 (213)
381 3eiq_A Eukaryotic initiation f 94.3 0.097 3.3E-06 52.7 8.4 58 211-271 40-101 (414)
382 3fht_A ATP-dependent RNA helic 94.3 0.16 5.6E-06 50.9 10.0 56 210-265 24-81 (412)
383 4f4c_A Multidrug resistance pr 94.3 0.096 3.3E-06 61.8 9.3 29 245-273 441-469 (1321)
384 2xzl_A ATP-dependent helicase 94.3 0.031 1.1E-06 62.6 4.9 35 249-283 376-414 (802)
385 1p5z_B DCK, deoxycytidine kina 94.3 0.011 3.7E-07 56.8 1.0 29 249-277 25-54 (263)
386 2f9l_A RAB11B, member RAS onco 94.2 0.024 8.3E-07 51.5 3.3 23 250-272 7-29 (199)
387 3v9p_A DTMP kinase, thymidylat 94.2 0.03 1E-06 52.9 4.0 30 250-279 27-63 (227)
388 2oap_1 GSPE-2, type II secreti 94.2 0.017 5.7E-07 61.4 2.4 62 248-309 260-343 (511)
389 2cbz_A Multidrug resistance-as 94.2 0.017 5.7E-07 55.0 2.1 27 246-272 29-55 (237)
390 1bif_A 6-phosphofructo-2-kinas 94.2 0.014 4.9E-07 61.1 1.7 26 248-273 39-64 (469)
391 2dyk_A GTP-binding protein; GT 94.2 0.027 9.3E-07 48.6 3.3 22 250-271 3-24 (161)
392 1oix_A RAS-related protein RAB 94.1 0.024 8.1E-07 51.3 2.9 23 250-272 31-53 (191)
393 3bgw_A DNAB-like replicative h 94.1 0.038 1.3E-06 57.6 4.7 39 244-282 193-234 (444)
394 1lw7_A Transcriptional regulat 94.1 0.026 9E-07 57.0 3.4 28 248-275 170-197 (365)
395 1z2a_A RAS-related protein RAB 94.1 0.027 9.3E-07 48.8 3.1 23 249-271 6-28 (168)
396 2xxa_A Signal recognition part 94.1 0.03 1E-06 58.1 4.0 37 247-283 99-139 (433)
397 3k53_A Ferrous iron transport 94.1 0.048 1.6E-06 52.5 5.1 23 249-271 4-26 (271)
398 3tif_A Uncharacterized ABC tra 94.1 0.023 7.8E-07 53.9 2.8 29 246-274 29-57 (235)
399 3pqc_A Probable GTP-binding pr 94.0 0.18 6.2E-06 44.7 8.7 23 249-271 24-46 (195)
400 3cbq_A GTP-binding protein REM 94.0 0.035 1.2E-06 50.5 3.9 22 249-270 24-45 (195)
401 1q57_A DNA primase/helicase; d 94.0 0.036 1.2E-06 58.5 4.5 39 244-282 238-280 (503)
402 3fmp_B ATP-dependent RNA helic 94.0 0.23 7.7E-06 51.6 10.6 58 211-271 92-155 (479)
403 3b85_A Phosphate starvation-in 94.0 0.022 7.7E-07 53.0 2.5 24 248-271 22-45 (208)
404 2h17_A ADP-ribosylation factor 94.0 0.058 2E-06 48.0 5.2 23 249-271 22-44 (181)
405 2www_A Methylmalonic aciduria 94.0 0.05 1.7E-06 54.7 5.3 25 248-272 74-98 (349)
406 2pcj_A ABC transporter, lipopr 93.9 0.017 6E-07 54.3 1.6 28 247-274 29-56 (224)
407 2onk_A Molybdate/tungstate ABC 93.9 0.025 8.7E-07 53.9 2.8 25 249-273 25-49 (240)
408 2krk_A 26S protease regulatory 93.9 0.052 1.8E-06 43.2 4.1 48 388-435 7-55 (86)
409 2o8b_B DNA mismatch repair pro 93.9 0.072 2.5E-06 61.1 6.9 22 248-269 789-810 (1022)
410 3q3j_B RHO-related GTP-binding 93.9 0.036 1.2E-06 51.1 3.7 23 249-271 28-50 (214)
411 2ffh_A Protein (FFH); SRP54, s 93.8 0.064 2.2E-06 55.5 5.8 34 248-281 98-134 (425)
412 1b0u_A Histidine permease; ABC 93.8 0.024 8.2E-07 54.7 2.5 29 246-274 30-58 (262)
413 3tmk_A Thymidylate kinase; pho 93.8 0.044 1.5E-06 51.4 4.2 29 249-277 6-34 (216)
414 1mv5_A LMRA, multidrug resista 93.8 0.022 7.4E-07 54.3 2.1 28 246-273 26-53 (243)
415 3llu_A RAS-related GTP-binding 93.8 0.052 1.8E-06 49.1 4.5 24 249-272 21-44 (196)
416 2j1l_A RHO-related GTP-binding 93.7 0.033 1.1E-06 51.3 3.2 22 249-270 35-56 (214)
417 3sop_A Neuronal-specific septi 93.7 0.031 1E-06 54.2 3.0 24 250-273 4-27 (270)
418 2pze_A Cystic fibrosis transme 93.7 0.024 8.1E-07 53.6 2.1 28 246-273 32-59 (229)
419 2ghi_A Transport protein; mult 93.7 0.024 8.3E-07 54.6 2.1 28 246-273 44-71 (260)
420 2olj_A Amino acid ABC transpor 93.6 0.025 8.5E-07 54.8 2.2 29 246-274 48-76 (263)
421 3b1v_A Ferrous iron uptake tra 93.6 0.098 3.4E-06 50.6 6.5 23 249-271 4-26 (272)
422 2wji_A Ferrous iron transport 93.6 0.035 1.2E-06 48.7 3.1 22 250-271 5-26 (165)
423 1z08_A RAS-related protein RAB 93.6 0.039 1.3E-06 48.0 3.3 23 249-271 7-29 (170)
424 1sgw_A Putative ABC transporte 93.6 0.024 8.1E-07 53.1 2.0 28 247-274 34-61 (214)
425 2zu0_C Probable ATP-dependent 93.6 0.033 1.1E-06 53.9 3.0 27 246-272 44-70 (267)
426 2ixe_A Antigen peptide transpo 93.6 0.025 8.5E-07 54.9 2.1 29 246-274 43-71 (271)
427 1g8f_A Sulfate adenylyltransfe 93.6 0.05 1.7E-06 57.6 4.6 26 249-274 396-421 (511)
428 1ky3_A GTP-binding protein YPT 93.6 0.039 1.3E-06 48.5 3.3 24 249-272 9-32 (182)
429 1g6h_A High-affinity branched- 93.6 0.024 8.4E-07 54.5 2.0 28 247-274 32-59 (257)
430 1j8m_F SRP54, signal recogniti 93.6 0.042 1.4E-06 54.1 3.7 35 248-282 98-135 (297)
431 3p32_A Probable GTPase RV1496/ 93.6 0.055 1.9E-06 54.4 4.7 33 248-280 79-114 (355)
432 1g16_A RAS-related protein SEC 93.5 0.035 1.2E-06 48.2 2.9 23 249-271 4-26 (170)
433 2zej_A Dardarin, leucine-rich 93.5 0.032 1.1E-06 49.9 2.6 21 250-270 4-24 (184)
434 2ff7_A Alpha-hemolysin translo 93.4 0.024 8.1E-07 54.3 1.6 29 246-274 33-61 (247)
435 1f2t_A RAD50 ABC-ATPase; DNA d 93.4 0.039 1.3E-06 48.4 2.9 23 250-272 25-47 (149)
436 3iby_A Ferrous iron transport 93.4 0.079 2.7E-06 50.8 5.3 22 250-271 3-24 (256)
437 3gfo_A Cobalt import ATP-bindi 93.4 0.024 8.3E-07 55.2 1.7 27 247-273 33-59 (275)
438 2d2e_A SUFC protein; ABC-ATPas 93.4 0.031 1.1E-06 53.5 2.4 25 247-271 28-52 (250)
439 2gza_A Type IV secretion syste 93.4 0.032 1.1E-06 56.5 2.6 27 247-273 174-200 (361)
440 1vpl_A ABC transporter, ATP-bi 93.4 0.033 1.1E-06 53.6 2.6 28 246-273 39-66 (256)
441 2qi9_C Vitamin B12 import ATP- 93.4 0.025 8.5E-07 54.3 1.7 28 247-274 25-52 (249)
442 3fvq_A Fe(3+) IONS import ATP- 93.3 0.037 1.3E-06 56.0 2.9 26 247-272 29-54 (359)
443 3lv8_A DTMP kinase, thymidylat 93.3 0.046 1.6E-06 52.0 3.5 24 249-272 28-51 (236)
444 1ji0_A ABC transporter; ATP bi 93.3 0.029 1E-06 53.3 2.0 27 248-274 32-58 (240)
445 3cr8_A Sulfate adenylyltranfer 93.3 0.032 1.1E-06 59.7 2.6 26 248-273 369-394 (552)
446 2f1r_A Molybdopterin-guanine d 93.3 0.026 9E-07 50.9 1.6 25 249-273 3-27 (171)
447 2wjg_A FEOB, ferrous iron tran 93.3 0.039 1.3E-06 49.1 2.7 23 249-271 8-30 (188)
448 1upt_A ARL1, ADP-ribosylation 93.2 0.048 1.6E-06 47.5 3.2 24 248-271 7-30 (171)
449 2it1_A 362AA long hypothetical 93.2 0.045 1.5E-06 55.5 3.4 26 248-273 29-54 (362)
450 2pt7_A CAG-ALFA; ATPase, prote 93.2 0.032 1.1E-06 55.8 2.2 63 248-310 171-251 (330)
451 2yz2_A Putative ABC transporte 93.2 0.035 1.2E-06 53.6 2.4 28 246-273 31-58 (266)
452 2yyz_A Sugar ABC transporter, 93.1 0.046 1.6E-06 55.3 3.3 27 247-273 28-54 (359)
453 2wsm_A Hydrogenase expression/ 93.1 0.1 3.4E-06 48.0 5.4 26 248-273 30-55 (221)
454 2lkc_A Translation initiation 93.1 0.057 2E-06 47.4 3.6 23 248-270 8-30 (178)
455 2ihy_A ABC transporter, ATP-bi 93.1 0.032 1.1E-06 54.4 2.1 27 248-274 47-73 (279)
456 3rlf_A Maltose/maltodextrin im 93.1 0.048 1.6E-06 55.6 3.4 27 247-273 28-54 (381)
457 1tf7_A KAIC; homohexamer, hexa 93.1 0.039 1.3E-06 58.6 2.8 39 244-282 35-77 (525)
458 1v43_A Sugar-binding transport 93.1 0.048 1.6E-06 55.5 3.4 27 247-273 36-62 (372)
459 2nq2_C Hypothetical ABC transp 93.0 0.029 1E-06 53.9 1.6 27 247-273 30-56 (253)
460 1yrb_A ATP(GTP)binding protein 93.0 0.089 3E-06 49.8 5.1 33 249-281 15-49 (262)
461 3tbk_A RIG-I helicase domain; 93.0 0.45 1.5E-05 49.7 10.9 22 249-270 20-41 (555)
462 1z47_A CYSA, putative ABC-tran 93.0 0.043 1.5E-06 55.5 2.8 26 248-273 41-66 (355)
463 2qm8_A GTPase/ATPase; G protei 93.0 0.064 2.2E-06 53.7 4.0 27 246-272 53-79 (337)
464 4g1u_C Hemin import ATP-bindin 92.9 0.039 1.3E-06 53.4 2.3 27 247-273 36-62 (266)
465 2db3_A ATP-dependent RNA helic 92.9 0.34 1.2E-05 49.8 9.7 51 211-264 56-109 (434)
466 2obl_A ESCN; ATPase, hydrolase 92.9 0.073 2.5E-06 53.6 4.4 31 248-278 71-101 (347)
467 4f4c_A Multidrug resistance pr 92.9 0.047 1.6E-06 64.5 3.4 28 245-272 1102-1129(1321)
468 3l0o_A Transcription terminati 92.9 0.15 5.2E-06 52.0 6.7 23 250-272 177-199 (427)
469 3d31_A Sulfate/molybdate ABC t 92.9 0.041 1.4E-06 55.4 2.5 27 247-273 25-51 (348)
470 1m7b_A RND3/RHOE small GTP-bin 92.8 0.052 1.8E-06 48.4 2.9 23 249-271 8-30 (184)
471 4djt_A GTP-binding nuclear pro 92.8 0.018 6.1E-07 53.0 -0.4 22 249-270 12-33 (218)
472 4tmk_A Protein (thymidylate ki 92.7 0.055 1.9E-06 50.6 3.0 23 250-272 5-27 (213)
473 2gf9_A RAS-related protein RAB 92.7 0.061 2.1E-06 48.1 3.2 24 249-272 23-46 (189)
474 3tw8_B RAS-related protein RAB 92.7 0.056 1.9E-06 47.4 2.9 22 249-270 10-31 (181)
475 1mh1_A RAC1; GTP-binding, GTPa 92.7 0.062 2.1E-06 47.4 3.2 22 250-271 7-28 (186)
476 1g29_1 MALK, maltose transport 92.7 0.049 1.7E-06 55.4 2.8 26 248-273 29-54 (372)
477 3gj0_A GTP-binding nuclear pro 92.7 0.04 1.4E-06 50.8 1.9 22 250-271 17-39 (221)
478 2gj8_A MNME, tRNA modification 92.6 0.048 1.6E-06 48.4 2.3 23 249-271 5-27 (172)
479 2pjz_A Hypothetical protein ST 92.6 0.041 1.4E-06 53.2 2.0 25 248-272 30-54 (263)
480 3ld9_A DTMP kinase, thymidylat 92.6 0.077 2.6E-06 50.0 3.9 26 249-274 22-47 (223)
481 2dpy_A FLII, flagellum-specifi 92.6 0.095 3.2E-06 54.4 4.9 30 248-277 157-186 (438)
482 3bwd_D RAC-like GTP-binding pr 92.6 0.067 2.3E-06 47.1 3.2 24 248-271 8-31 (182)
483 2p6r_A Afuhel308 helicase; pro 92.6 0.25 8.7E-06 54.1 8.5 19 248-266 40-58 (702)
484 1ls1_A Signal recognition part 92.5 0.12 4E-06 50.7 5.2 34 248-281 98-134 (295)
485 2bbs_A Cystic fibrosis transme 92.5 0.04 1.4E-06 54.1 1.8 27 246-272 62-88 (290)
486 3c5c_A RAS-like protein 12; GD 92.5 0.069 2.4E-06 47.9 3.3 22 250-271 23-44 (187)
487 4ag6_A VIRB4 ATPase, type IV s 92.5 0.13 4.4E-06 52.2 5.6 35 248-282 35-72 (392)
488 1svi_A GTP-binding protein YSX 92.5 0.063 2.2E-06 48.0 3.0 24 248-271 23-46 (195)
489 4hlc_A DTMP kinase, thymidylat 92.5 0.11 3.7E-06 48.2 4.6 29 251-279 5-35 (205)
490 1m2o_B GTP-binding protein SAR 92.4 0.061 2.1E-06 48.4 2.9 22 249-270 24-45 (190)
491 1pui_A ENGB, probable GTP-bind 92.4 0.034 1.2E-06 50.6 1.1 26 246-271 24-49 (210)
492 2iwr_A Centaurin gamma 1; ANK 92.4 0.054 1.8E-06 47.7 2.4 23 249-271 8-30 (178)
493 2qe7_A ATP synthase subunit al 92.4 0.33 1.1E-05 51.0 8.6 63 250-312 164-232 (502)
494 1oxx_K GLCV, glucose, ABC tran 92.4 0.041 1.4E-06 55.6 1.8 26 247-272 30-55 (353)
495 3ihw_A Centg3; RAS, centaurin, 92.4 0.074 2.5E-06 47.7 3.3 22 250-271 22-43 (184)
496 1vg8_A RAS-related protein RAB 92.3 0.074 2.5E-06 48.1 3.3 24 249-272 9-32 (207)
497 2cxx_A Probable GTP-binding pr 92.3 0.058 2E-06 47.9 2.5 22 250-271 3-24 (190)
498 2npi_A Protein CLP1; CLP1-PCF1 92.3 0.062 2.1E-06 56.2 3.0 28 245-272 135-162 (460)
499 2gks_A Bifunctional SAT/APS ki 92.3 0.11 3.8E-06 55.5 5.0 32 249-280 373-407 (546)
500 3cph_A RAS-related protein SEC 92.2 0.076 2.6E-06 48.2 3.2 24 248-271 20-43 (213)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-41 Score=349.98 Aligned_cols=212 Identities=28% Similarity=0.373 Sum_probs=183.3
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~---- 284 (489)
+..+|++|+|.+++|++|.+.+..++.+|+.|+++|+++|+|+|||||||||||+||+|+|++++.+++.++++++
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc
Confidence 4469999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred --CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCc
Q 011286 285 --EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDE 360 (489)
Q Consensus 285 --~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~ 360 (489)
++...++.+|..+ ..||||||||||+++..+...+... ......++++||+.|||+.+. ++
T Consensus 223 vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~-------------~~~~~~~l~~lL~~lDg~~~~--~~ 287 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGG-------------DSEVQRTMLELLNQLDGFETS--KN 287 (405)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGG-------------GGHHHHHHHHHHHHHHTTTCC--CC
T ss_pred cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCC-------------cHHHHHHHHHHHHhhhccCCC--CC
Confidence 2467889999766 4699999999999986443221111 234567899999999999764 56
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 361 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 361 ~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
++||+|||+|+.|||||+||||||.+|+||.|+.++|.+|++.++.........++..++..+ ++|+|||.+++.
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~ 363 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCT 363 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998765444344677777754 599999998874
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-41 Score=348.23 Aligned_cols=214 Identities=25% Similarity=0.326 Sum_probs=183.3
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC-
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE- 285 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~- 285 (489)
-.+..+|++|+|.+++|++|.+.+..|+.++++|++.|++|++|||||||||||||+||+|+|++++.+++.++++++.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 4455799999999999999999999999999999999999999999999999999999999999999999999998872
Q ss_pred -----ChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCC
Q 011286 286 -----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCG 358 (489)
Q Consensus 286 -----~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g 358 (489)
+...++.+|..+ ..||||||||||+++..+...+.. .......++++||+.|||....
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~-------------~~~~~~~~l~~LL~~lDg~~~~-- 319 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSG-------------GEREIQRTMLELLNQLDGFDDR-- 319 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCS-------------SCCHHHHHHHHHHHHHHHCCCS--
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCC-------------ccHHHHHHHHHHHHHhhCcCCC--
Confidence 456788888765 469999999999998644321111 1345678999999999998654
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 359 DERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 359 ~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
++++||+|||+++.|||||+||||||++|+|++|+.++|++|++.++.........+++.++..+ +||+|||.+++.
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 397 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCT 397 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999765433334577777754 599999998874
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-40 Score=345.54 Aligned_cols=214 Identities=25% Similarity=0.308 Sum_probs=182.6
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC-
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE- 285 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~- 285 (489)
-.++.+|++|+|.+++|++|.+.+..|+.+|+.|+++|+++|+|+|||||||||||++|+|+|++++.+++.++++.+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 4556799999999999999999999999999999999999999999999999999999999999999999999998872
Q ss_pred -----ChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCC
Q 011286 286 -----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCG 358 (489)
Q Consensus 286 -----~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g 358 (489)
+...++.+|..+ ..||||||||||+++..+....... ......+++.||+.|||+.+.
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~-------------~~~~~~~~~~lL~~ldg~~~~-- 318 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSG-------------DREVQRTMLELLNQLDGFSSD-- 318 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGT-------------THHHHHHHHHHHHHHTTSCSS--
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCC-------------chHHHHHHHHHHHHhhccCCC--
Confidence 456788888655 5699999999999986443222111 234567899999999999764
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 359 DERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 359 ~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
++++||+|||+|+.|||||+||||||.+|+||+|+.++|.+|++.++......-..++..++..+ ++|+|||.+++.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~ 396 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTV 396 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999988754333233566777654 599999998874
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-40 Score=346.46 Aligned_cols=213 Identities=26% Similarity=0.350 Sum_probs=182.3
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC--
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-- 285 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~-- 285 (489)
.+..+|++|+|.+++|++|.+.+..++.+++.|.++|+++++|+|||||||||||+||+|+|++++.+++.++++++.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 445699999999999999999999999999999999999999999999999999999999999999999999998872
Q ss_pred ----ChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 286 ----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 286 ----~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
+...++.+|..+ ..||||||||||+++..+...+.. .......++++||+.|||+.+. +
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~-------------~~~~~~~~l~~lL~~lDg~~~~--~ 319 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS-------------ADREIQRTLMELLTQMDGFDNL--G 319 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCS-------------STTHHHHHHHHHHHHHHSSSCT--T
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCC-------------cchHHHHHHHHHHHHhhcccCC--C
Confidence 456788888765 569999999999998643221110 1344578899999999999764 5
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
+++||+|||+|+.|||||+||||||.+|+||+|+.++|..||+.++.........++..++..+ +||+|||.+++.
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~ 396 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCAT 396 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHH
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999998754433334577777754 599999998874
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-40 Score=341.89 Aligned_cols=213 Identities=27% Similarity=0.377 Sum_probs=181.9
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~--- 284 (489)
.+..+|++++|.+++|+.|.+.+..|+.++++|.++|++|++|+|||||||||||++|+|+|++++.+++.++++++
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 34469999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ---CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 285 ---~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
.+...++.+|..+ ..||||||||||+++..+...... .......++++||+.|||+.+. .
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~-------------~~~~~~r~l~~lL~~ldg~~~~--~ 310 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTG-------------SDREVQRILIELLTQMDGFDQS--T 310 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSC-------------CCCHHHHHHHHHHHHHHHSCSS--C
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCC-------------CChHHHHHHHHHHHHhhCCCCC--C
Confidence 2457788999766 469999999999998643221110 1345678999999999999775 4
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeC-CCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMS-YCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~-~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
+++||+|||+++.|||||+||||||++|+|| +|+.++|+.|++.++.........++..++..+ ++|+|||.+++.
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~ 388 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQ 388 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHH
Confidence 5999999999999999999999999999996 899999999999998754333333567777654 699999998874
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-39 Score=339.24 Aligned_cols=213 Identities=24% Similarity=0.282 Sum_probs=181.8
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC--
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-- 285 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~-- 285 (489)
.+..+|++|+|.+++|++|.+.+..++.+++.|+++|+++++|+|||||||||||+||+|+|++++.+++.++++.+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 282 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence 344799999999999999999999999999999999999999999999999999999999999999999999998872
Q ss_pred ----ChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 286 ----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 286 ----~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
+...++.+|..+ .+||||||||||.++..+...+... ......+++.||+.|||.... +
T Consensus 283 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~-------------~~~~~~~l~~lL~~lDg~~~~--~ 347 (467)
T 4b4t_H 283 YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGG-------------DNEVQRTMLELITQLDGFDPR--G 347 (467)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGG-------------GGHHHHHHHHHHHHHHSSCCT--T
T ss_pred cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCc-------------cHHHHHHHHHHHHHhhccCCC--C
Confidence 457788888765 5699999999999986443211111 234567899999999998654 5
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
+++||+|||+++.|||||+||||||++|+|+.|+.++|.+|++.++.........++..++..+ ++|+|||.+++.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~ 424 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCT 424 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999998765433334566676654 599999998874
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.8e-35 Score=328.99 Aligned_cols=223 Identities=21% Similarity=0.317 Sum_probs=165.8
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~---- 284 (489)
+..+|++++|.+++|+.|.+.+..++..++.|.+.|..+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccc
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred --CChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCc
Q 011286 285 --EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDE 360 (489)
Q Consensus 285 --~~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~ 360 (489)
+++..++++|..+. .||||||||||+++..+....... +....+++++||++|||+.+. ++
T Consensus 552 vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~-------------~~~~~rv~~~lL~~mdg~~~~--~~ 616 (806)
T 3cf2_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG-------------GGAADRVINQILTEMDGMSTK--KN 616 (806)
T ss_dssp CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------------------------CHHHHHHHHHHHSSCSS--SS
T ss_pred cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCC-------------chHHHHHHHHHHHHHhCCCCC--CC
Confidence 56788999998774 599999999999987543221111 334578999999999999654 56
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHhcCCC
Q 011286 361 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLMRDEV 439 (489)
Q Consensus 361 ~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~~~~~ 439 (489)
++||+|||+|+.|||||+||||||.+|++|+|+.++|.+|++.++.........++..++..+ +||+|||.+++.
T Consensus 617 V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~---- 692 (806)
T 3cf2_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ---- 692 (806)
T ss_dssp EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHH----
T ss_pred EEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHH----
Confidence 999999999999999999999999999999999999999999998755443344567777654 599999999885
Q ss_pred HHHHHHHHHHHH
Q 011286 440 PKIALSGLIQFL 451 (489)
Q Consensus 440 ~~~al~~l~~~l 451 (489)
++++..+.+.+
T Consensus 693 -~A~~~a~r~~~ 703 (806)
T 3cf2_A 693 -RACKLAIRESI 703 (806)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 44444444443
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2e-33 Score=312.55 Aligned_cols=220 Identities=24% Similarity=0.337 Sum_probs=186.3
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV----- 284 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~----- 284 (489)
..+|++|+|.+++|++|.+.+..++.+++.|.++|..+++|+|||||||||||+||+++|++++.+++.++++++
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 358999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred -CChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCce
Q 011286 285 -EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDER 361 (489)
Q Consensus 285 -~~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ 361 (489)
++...++.+|..+. .||||||||||.+++.++... +.....++++||..|||+.+. ..+
T Consensus 280 gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~----------------~~~~~riv~~LL~~mdg~~~~--~~V 341 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH----------------GEVERRIVSQLLTLMDGLKQR--AHV 341 (806)
T ss_dssp THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC----------------CTTHHHHHHHHHTHHHHCCGG--GCE
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC----------------ChHHHHHHHHHHHHHhccccc--CCE
Confidence 24577899998774 599999999999986432211 344578899999999999765 459
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHhcCCCH
Q 011286 362 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLMRDEVP 440 (489)
Q Consensus 362 iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~~~~~~ 440 (489)
+||+|||+++.|||||+||||||.+|+++.|+.++|.+|++.++.........++..++.. .+++++|+...+.
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~----- 416 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS----- 416 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHH-----
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHH-----
Confidence 9999999999999999999999999999999999999999999876544444467777775 4599999998874
Q ss_pred HHHHHHHHHHHH
Q 011286 441 KIALSGLIQFLQ 452 (489)
Q Consensus 441 ~~al~~l~~~l~ 452 (489)
++++..+.+.+.
T Consensus 417 eA~~~A~~r~~~ 428 (806)
T 3cf2_A 417 EAALQAIRKKMD 428 (806)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 344444444433
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=3e-29 Score=251.46 Aligned_cols=213 Identities=22% Similarity=0.322 Sum_probs=175.7
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~--- 284 (489)
.++.+|++++|.+++|+.|.+.+..++..++.|...|..+++++|||||||||||++|+++|++++.+++.++++.+
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred ---CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 285 ---~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
.....++.+|..+ ..|+||||||||.+...+....... .......++.||..||++... .
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~-------------~~~~~~~~~~lL~~l~~~~~~--~ 153 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG-------------GGAADRVINQILTEMDGMSTK--K 153 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCS-------------SCSCCHHHHHHHHHHHSSCTT--S
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCc-------------chHHHHHHHHHHHHhhcccCC--C
Confidence 2456677888765 3589999999999976332111000 223456788999999997543 5
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 435 (489)
+++||+|||+++.||++++|||||+..|+++.|+.++|..|++.++.........++..++.. .+++++|+.+.+.
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~ 230 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 230 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999976543323345555553 4699999998874
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=250.54 Aligned_cols=209 Identities=22% Similarity=0.328 Sum_probs=165.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCC--
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG-- 286 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~-- 286 (489)
+..+|++++|.+++|+.|.+.+..++..++.|+.+|...++|++|+||||||||+|++++|++++.+++.++...+..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 346899999999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred ----hHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCc
Q 011286 287 ----NKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDE 360 (489)
Q Consensus 287 ----~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~ 360 (489)
...+..+|... ..|+|+|+||||.+...+.... .......++.++..|+|.... ..
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~----------------~~~~~~~~~~~l~~Lsgg~~~--~~ 146 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE----------------TGASVRVVNQLLTEMDGLEAR--QQ 146 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------------------CTTHHHHHHHHHHTCCST--TC
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc----------------chHHHHHHHHHHHhhhccccc--CC
Confidence 34577777764 4689999999999864321110 112345678999999997543 45
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcC-CCCC--hHhHHHHHhc---cCCCHHHHHHHH
Q 011286 361 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGIT-EHPL--FLEVEELIEK---VEVTPADVAEQL 434 (489)
Q Consensus 361 ~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~-~~~l--~~~i~~l~~~---~~~spa~i~~~l 434 (489)
++++++||+|+.||||++||||||.+|++++|+.++|..|++.++... ..++ ..++..++.. .+||+|||...+
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~ 226 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALV 226 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHH
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHH
Confidence 899999999999999999999999999999999999999999988542 1222 2346666654 379999999887
Q ss_pred h
Q 011286 435 M 435 (489)
Q Consensus 435 ~ 435 (489)
.
T Consensus 227 ~ 227 (274)
T 2x8a_A 227 R 227 (274)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=4.8e-28 Score=239.48 Aligned_cols=214 Identities=26% Similarity=0.305 Sum_probs=174.6
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC-
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE- 285 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~- 285 (489)
..++.+|++++|.+++++.|.+.+..++..++.|...|...++++|||||||||||++|+++|+.++.+++.++++.+.
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 4456789999999999999999999999999999999999999999999999999999999999999999999988762
Q ss_pred -----ChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCC
Q 011286 286 -----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCG 358 (489)
Q Consensus 286 -----~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g 358 (489)
....+..+|... ..|+||||||||.+...+...... ........+..+++.+++....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~-------------~~~~~~~~l~~ll~~~~~~~~~-- 154 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG-------------GDREVQRTLMQLLAEMDGFDAR-- 154 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCG-------------GGGHHHHHHHHHHHHHHTTCSS--
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCC-------------ccHHHHHHHHHHHHHhhCCCCC--
Confidence 234566666554 457999999999997532111000 0233467888899999887543
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHh
Q 011286 359 DERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 359 ~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 435 (489)
..++||+|||.++.+|++++|||||+.+++++.|+.+++.+|++.++.........++..++.. .+++++++...+.
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999876544434456666664 4589999988664
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=9.2e-28 Score=243.06 Aligned_cols=207 Identities=23% Similarity=0.284 Sum_probs=171.8
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-CCcEEEeecCcc---
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELSSV--- 284 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~~~~l~~s~~--- 284 (489)
++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 4569999999999999999999999999988874 35667999999999999999999999999 899999998876
Q ss_pred ---CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 285 ---~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
.....++.+|..+ .+|+||||||||.+...+... ........++.||..+|++... ..
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~----------------~~~~~~~~~~~ll~~ld~~~~~-~~ 148 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----------------ESEAARRIKTEFLVQMQGVGVD-ND 148 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC----------------CTTHHHHHHHHHHHHHHCSSSC-CT
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc----------------cchHHHHHHHHHHHHHhccccc-CC
Confidence 2456778888655 468999999999997532211 0233567889999999998532 35
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC-hHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL-FLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
.++||+|||+++.||++++| ||+.+|+++.|+.++|..|++.++......+ ..++..++... ++|++||..++.
T Consensus 149 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 79999999999999999999 9999999999999999999999997665544 44667777654 599999998774
No 13
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=7.3e-28 Score=254.98 Aligned_cols=211 Identities=26% Similarity=0.350 Sum_probs=169.6
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC---
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE--- 285 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~--- 285 (489)
.+.+|++|+|.++.|+++.+.+ .++..+..|..+|...++|+||+||||||||+|++++|++++.+++.++++++.
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 3568999999999999998765 468888999999999999999999999999999999999999999999988762
Q ss_pred ---ChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCc
Q 011286 286 ---GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDE 360 (489)
Q Consensus 286 ---~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~ 360 (489)
+...++.+|..+ ..|+||||||||.+...+....... ......+++.||..||++... .+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~-------------~~~~~~~l~~LL~~ld~~~~~--~~ 154 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG-------------HDEREQTLNQLLVEMDGFDSK--EG 154 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----------------------CHHHHHHHHHHHHHHHSCGG--GT
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcC-------------cHHHHHHHHHHHHHHhccCCC--CC
Confidence 345677888766 4699999999999965322110000 234567899999999987543 46
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHh
Q 011286 361 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 361 ~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 435 (489)
++||+|||+++.|||+++||||||..|.++.|+.++|..|++.++.........++..+... .+++++|+.+.+.
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~ 230 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVN 230 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998875432222235555554 3589999988774
No 14
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=1.1e-27 Score=233.33 Aligned_cols=211 Identities=25% Similarity=0.334 Sum_probs=156.3
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC----
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE---- 285 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~---- 285 (489)
+.+|++++|.+++|+.+.+.+. ++..++.|...|...++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 4689999999999999987665 57888889999999999999999999999999999999999999999998763
Q ss_pred --ChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCce
Q 011286 286 --GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDER 361 (489)
Q Consensus 286 --~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~ 361 (489)
+...++.+|.... .++||||||||.+...+........ .......+..|++.+++... ...+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~------------~~~~~~~l~~ll~~~~~~~~--~~~~ 146 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFS------------NTEEEQTLNQLLVEMDGMGT--TDHV 146 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------------------CHHHHHHHHHHHTCCT--TCCE
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCcc------------chhHHHHHHHHHHHhhCcCC--CCCE
Confidence 2355667776553 5899999999999753321110000 22345678899999998744 3569
Q ss_pred EEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhH--HHHHhc-cCCCHHHHHHHHh
Q 011286 362 IIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEV--EELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 362 iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i--~~l~~~-~~~spa~i~~~l~ 435 (489)
+||+|||.++.||++++|||||+..++++.|+.+++..|++.++.........++ ..+... .++++++|.+.+.
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876555544433 445544 3589999987764
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=1.5e-27 Score=241.31 Aligned_cols=209 Identities=21% Similarity=0.247 Sum_probs=171.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc--
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV-- 284 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~-- 284 (489)
..++.+|++++|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++.+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 456779999999999999999999999999888876 45567899999999999999999999999999999998775
Q ss_pred ----CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCC
Q 011286 285 ----EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCG 358 (489)
Q Consensus 285 ----~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g 358 (489)
.....++.+|..+ ..|+||||||||.+...+.... ........+.||..++++... .
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~----------------~~~~~~~~~~ll~~l~~~~~~-~ 152 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE----------------SEASRRIKTELLVQMNGVGND-S 152 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC----------------------CCTHHHHHHHHHHHGGGGTS-C
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCc----------------chHHHHHHHHHHHHhcccccc-C
Confidence 2345567777655 4589999999999975322111 234567889999999998543 3
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC-hHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 359 DERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL-FLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 359 ~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
..++||+|||+++.||++++| ||+..|+++.|+.++|..|++.++......+ ...+..++... +++++||..++.
T Consensus 153 ~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 569999999999999999999 9999999999999999999999998765554 44666777654 599999988774
No 16
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=4e-27 Score=229.91 Aligned_cols=213 Identities=23% Similarity=0.337 Sum_probs=163.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC-
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE- 285 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~- 285 (489)
..++.+|++++|.+++|+.+.+.+ .++..++.|+.+|...++|+||+||||||||++++++|+.++.+++.++++.+.
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 456779999999999999998765 457778888889999999999999999999999999999999999999988762
Q ss_pred -----ChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCC
Q 011286 286 -----GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCG 358 (489)
Q Consensus 286 -----~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g 358 (489)
....++.+|..+. .++|+||||||.+...+.... . .........++.+|..+|++...
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~--~-----------~~~~~~~~~~~~ll~~l~~~~~~-- 148 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL--G-----------GGHDEREQTLNQMLVEMDGFEGN-- 148 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTS--C-----------CTTCHHHHHHHHHHHHHHTCCSS--
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCc--C-----------CCchHHHHHHHHHHHHhhCcccC--
Confidence 3466778887654 479999999999864221100 0 00223346788999999987543
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 359 DERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 359 ~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
..++||+|||+++.+|++++|||||+..++++.|+.++|..|++.++..........+..+.... +++++|+.+.+.
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999988653222122334444443 479999987764
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.95 E-value=6.5e-27 Score=239.92 Aligned_cols=208 Identities=21% Similarity=0.254 Sum_probs=168.4
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc---
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV--- 284 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~--- 284 (489)
.++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++.+
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 45678999999999999999999999999988876 56677899999999999999999999999999999998765
Q ss_pred ---CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 285 ---EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 285 ---~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
.....++.+|..+ ..++||||||||.+...+.... ........+.||..||++... ..
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~----------------~~~~~~~~~~ll~~l~~~~~~-~~ 186 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE----------------SEASRRIKTELLVQMNGVGND-SQ 186 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------------------CTHHHHHHHHHHHHHHHCC----C
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc----------------chHHHHHHHHHHHHhhccccc-CC
Confidence 2346677777655 3689999999999875322111 234567788999999987532 35
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC-hHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL-FLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
.++||+|||+++.||++++| ||+..++++.|+.++|..|++.++......+ ..++..++... +++++||..++.
T Consensus 187 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 69999999999999999999 9999999999999999999999998665444 34667777654 599999998774
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=2e-26 Score=245.49 Aligned_cols=209 Identities=23% Similarity=0.328 Sum_probs=174.6
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC---
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE--- 285 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~--- 285 (489)
.+.+|++++|....++.|.+.+..++..++.|..+|...++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999987762
Q ss_pred ---ChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCc
Q 011286 286 ---GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDE 360 (489)
Q Consensus 286 ---~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~ 360 (489)
....++.+|..+ ..|+||||||||.+...+.... ......+++.||..|++.... ..
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~----------------~~~~~~~~~~LL~~ld~~~~~--~~ 340 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH----------------GEVERRIVSQLLTLMDGLKQR--AH 340 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC----------------CHHHHHHHHHHHHHHHHSCTT--SC
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc----------------chHHHHHHHHHHHHhhccccC--Cc
Confidence 245677777665 3579999999999975321100 223457788999999987543 46
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHh
Q 011286 361 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 361 ~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 435 (489)
++||+|||+++.||+++.|+|||+..|+++.|+.++|..|++.++.........++..++.. .+++++++...+.
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998875443333456666664 4699999987764
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.94 E-value=3.4e-26 Score=241.34 Aligned_cols=208 Identities=22% Similarity=0.261 Sum_probs=168.2
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-CCcEEEeecCccC-
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLELSSVE- 285 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~~~~~l~~s~~~- 285 (489)
.++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||+||+++|+++ +.+++.++++.+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 45679999999999999999999999998888764 34567899999999999999999999999 8999999988762
Q ss_pred -----ChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCC
Q 011286 286 -----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCG 358 (489)
Q Consensus 286 -----~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g 358 (489)
....++.+|..+ ..|+||||||||.+...+... ........++.||..||++... .
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~----------------~~~~~~~~~~~lL~~l~~~~~~-~ 269 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----------------ESEAARRIKTEFLVQMQGVGVD-N 269 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC----------------CCGGGHHHHHHHHTTTTCSSCC-C
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc----------------cccHHHHHHHHHHHHHhCcccC-C
Confidence 335567777654 468999999999986522111 0233567889999999997532 3
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC-hHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 359 DERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL-FLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 359 ~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
..++||+|||+++.|||+|+| ||+.+++++.|+.++|..|++.++......+ ..++..++... ++|++||..++.
T Consensus 270 ~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 569999999999999999999 9999999999999999999999987655443 34666776654 599999998874
No 20
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=3.9e-27 Score=231.07 Aligned_cols=214 Identities=26% Similarity=0.368 Sum_probs=161.5
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC--
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-- 285 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~-- 285 (489)
.++.+|++++|.+++++.+.+.+. ++..++.|..+|...++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 345689999999999999988655 68889999999999999999999999999999999999999999999887652
Q ss_pred ----ChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 286 ----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 286 ----~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
+...++.+|..+ ..++||||||+|.+...+...+.... .......++.||+.+++.... ..
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~------------~~~~~~~~~~ll~~l~~~~~~-~~ 150 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSG------------NDEREQTLNQLLAEMDGFGSE-NA 150 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------------------CCCSCSSTTTTTTTTTCSSCS-CS
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCC------------chhHHHHHHHHHHHhhCcccC-CC
Confidence 223344555444 35799999999999753221111000 222345677889999886432 34
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 435 (489)
.++||+|||.++.||++++|+|||+..|+++.|+.++|..+++.++.........++..++.. .+++++|+.+.+.
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~ 227 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIIN 227 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHH
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999998864332212223444443 3488888877653
No 21
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=7.1e-26 Score=241.07 Aligned_cols=211 Identities=24% Similarity=0.314 Sum_probs=166.8
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCC--
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG-- 286 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~-- 286 (489)
++.+|++|+|.++.|+++.+.+ .++..+..|..+|...++|+||+||||||||+|+++||++++.+++.++++++..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv-~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHH-HHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHH-HHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 5679999999999999997755 5677888899999999999999999999999999999999999999999887632
Q ss_pred ----hHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCc
Q 011286 287 ----NKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDE 360 (489)
Q Consensus 287 ----~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~ 360 (489)
...++.+|.... .|+|+||||||.+...+..... . .......+++.||..|||.... ..
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~-~------------~~~e~~~~l~~LL~~Ldg~~~~--~~ 169 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG-G------------GNDEREQTLNQLLVEMDGFEKD--TA 169 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTT-T------------SSHHHHHHHHHHHHHGGGCCSS--CC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcC-C------------CcHHHHHHHHHHHHHhcccccC--cc
Confidence 345677777664 4899999999998642211000 0 0123457889999999997543 45
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 361 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 361 ~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
+++|++||+|+.|||+++||||||.+|+++.|+.++|.+|++.++.........++..++... +++++|+.+.+.
T Consensus 170 viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~ 245 (499)
T 2dhr_A 170 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 245 (499)
T ss_dssp CEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHH
T ss_pred EEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999887643222122344455543 589999988874
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=4.4e-25 Score=215.04 Aligned_cols=212 Identities=25% Similarity=0.325 Sum_probs=162.6
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC--
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-- 285 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~-- 285 (489)
.++.+|++++|.++.++++.+.. .++..+..+..++...++|++|+||||||||+|++++|+.++.+++.++...+.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~-~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHH-HHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHH-HHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 34569999999999999997654 456778889999999999999999999999999999999999999998876541
Q ss_pred ----ChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 286 ----GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 286 ----~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
....+..+|.... .++++||||||.+...+....... .......++.+++.++|... ..
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~-------------~~~~~~~~~~ll~~l~g~~~--~~ 153 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG-------------NDEREQTLNQLLVEMDGFEK--DT 153 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----------------------CHHHHHHHHHHHHHHHTCCT--TC
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccccc-------------chHHHHHHHHHHHHHhCCCC--CC
Confidence 2345667777654 489999999999864322100000 12335677889999998743 24
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
.++++++||+|+.|||+++|||||+.+|+++.|+.++|..|++.++.........++..++... +++++|+.+.+.
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999887533222222355555543 589999987764
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.93 E-value=2.3e-25 Score=230.92 Aligned_cols=210 Identities=24% Similarity=0.289 Sum_probs=167.9
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC-
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE- 285 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~- 285 (489)
..+|.+|++++|.+.+++.|.+.+..++..++.|...+. +++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 567889999999999999999999999998888887774 468999999999999999999999999999999998873
Q ss_pred -----ChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCC
Q 011286 286 -----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCG 358 (489)
Q Consensus 286 -----~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g 358 (489)
....++.+|... ..++||||||||.++..+.... .......+..||..++|......
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~----------------~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGE----------------HDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC------------------------CTHHHHHHHHHHHHHHHC----
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCcc----------------chHHHHHHHHHHHHhhcccccCC
Confidence 345566666554 4579999999999975322111 23356778899999999876555
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChH-hHHHHHhc-cCCCHHHHHHHHh
Q 011286 359 DERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL-EVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 359 ~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~-~i~~l~~~-~~~spa~i~~~l~ 435 (489)
..++||+|||+++.||++++| ||+.+|+++.|+.+++..|++.++...+..+.+ .+..++.. .+++++++..++.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 679999999999999999999 999999999999999999999999877666644 55556554 4589999987664
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.93 E-value=3e-25 Score=227.65 Aligned_cols=209 Identities=20% Similarity=0.298 Sum_probs=166.8
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCC-
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG- 286 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~- 286 (489)
.+|.+|++++|.+++++.|.+.+..++..++.|...+ ..++++||+||||||||++|+++|++++.+++.++++.+..
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3577999999999999999999999998888887665 45789999999999999999999999999999999988732
Q ss_pred -----hHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 287 -----NKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 287 -----~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
...++.+|... ..++||||||||.+...+.... .......++.||..+++.....+.
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~----------------~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE----------------HESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC----------------------CHHHHHHHHHHHHHHC----CCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc----------------chHHHHHHHHHHHHHhcccccCCC
Confidence 34556666544 4589999999999975322110 234567788999999998655556
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCCh-HhHHHHHhcc-CCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF-LEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~-~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
.++||+|||.++.||++++| ||+..++++.|+.+++..+++.++......+. ..+..++... +++++++..++.
T Consensus 221 ~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 79999999999999999999 99999999999999999999998876555553 4566666644 589999988764
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.92 E-value=1e-24 Score=216.91 Aligned_cols=209 Identities=22% Similarity=0.289 Sum_probs=163.9
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC--
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-- 285 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~-- 285 (489)
.++.+|++++|.+++++.+.+.+..++..++.|..++ .+++++||+||||||||++|+++|++++.+++.++++.+.
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4677999999999999999999999888888877666 3468999999999999999999999999999999998763
Q ss_pred ----ChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccC-CC
Q 011286 286 ----GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSS-CG 358 (489)
Q Consensus 286 ----~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~-~g 358 (489)
....++.+|... ..++||||||||.+...+.... ........+.||..+|+.... .+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~----------------~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE----------------HEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC---------------------CCSHHHHHHHHHHHHHCC-----
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc----------------chHHHHHHHHHHHHHhcccccCCC
Confidence 234455666544 4689999999999975322111 122356677899999987542 23
Q ss_pred CceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChH-hHHHHHhc-cCCCHHHHHHHHh
Q 011286 359 DERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL-EVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 359 ~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~-~i~~l~~~-~~~spa~i~~~l~ 435 (489)
..++||+|||+++.||++++| ||+..++++.|+.+++..+++.++......+.+ .+..++.. .+++++++...+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 568999999999999999999 999999999999999999999988765555543 45555554 4689999987764
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.92 E-value=6.3e-24 Score=209.94 Aligned_cols=212 Identities=25% Similarity=0.319 Sum_probs=161.9
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC--
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-- 285 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~-- 285 (489)
.++.+|++++|.+++++++.+. ..++..+..+..++...++|++|+||||||||+|++++|+.++.+++.+++..+.
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l-~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHH-HHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCChHHHHHHHHHH-HHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 3567999999999999998764 4556778889999999999999999999999999999999999999999876541
Q ss_pred ----ChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCC
Q 011286 286 ----GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGD 359 (489)
Q Consensus 286 ----~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~ 359 (489)
....+..+|.... .++++|+||||.+...+....... .......+..+++.++|... ..
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~-------------~~~~~~~~~~ll~~lsgg~~--~~ 177 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG-------------NDEREQTLNQLLVEMDGFEK--DT 177 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC---------------------CHHHHHHHHHHHHHHTTCCT--TC
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCc-------------chHHHHHHHHHHHHHhCCCC--CC
Confidence 2345667776653 589999999998864221100000 12235677889999998643 24
Q ss_pred ceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 360 ERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 360 ~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
.++++++||+|+.|||+++|||||+.+|+++.|+.++|..|++.++.........++..++... +++++|+.+.+.
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999887543222122345555543 588899877764
No 27
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=6.4e-25 Score=219.27 Aligned_cols=170 Identities=18% Similarity=0.146 Sum_probs=120.6
Q ss_pred HhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC------ChHHHHHHHHHc------cCCeEEEEccch
Q 011286 242 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE------GNKDLRQILIAT------ENKSILVVEDID 309 (489)
Q Consensus 242 ~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~------~~~~L~~l~~~~------~~~sIL~iDdiD 309 (489)
..|..+++|+|||||||||||++|+++|++++.+++.++++.+. ....++.+|..+ ..++||||||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 34678889999999999999999999999999999999988762 235567777655 268999999999
Q ss_pred hhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccccc---------CCCCceEEEEecCCCCCCCccccCC
Q 011286 310 CCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWS---------SCGDERIIIFTTNHKDRLDPALLRP 380 (489)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s---------~~g~~~iiI~TTN~~~~LDpALlRp 380 (489)
.+.+... +.... ....+...+.|++.||+... ....+++||+|||+++.||++|+||
T Consensus 110 ~~~~~~~--~~~~~------------~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~ 175 (293)
T 3t15_A 110 AGAGRMG--GTTQY------------TVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRD 175 (293)
T ss_dssp ----------------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHH
T ss_pred hhcCCCC--CCccc------------cchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCC
Confidence 9875211 11000 12345677889999885531 1234689999999999999999999
Q ss_pred CceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhccCCCHHHH
Q 011286 381 GRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEVTPADV 430 (489)
Q Consensus 381 GRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i 430 (489)
||||.+|++ |+.+++..|++.++...+.. ...+..+... ++++++
T Consensus 176 ~R~d~~i~~--P~~~~r~~Il~~~~~~~~~~-~~~l~~~~~~--~~~~~l 220 (293)
T 3t15_A 176 GRMEKFYWA--PTREDRIGVCTGIFRTDNVP-AEDVVKIVDN--FPGQSI 220 (293)
T ss_dssp HHEEEEEEC--CCHHHHHHHHHHHHGGGCCC-HHHHHHHHHH--SCSCCH
T ss_pred CCCceeEeC--cCHHHHHHHHHHhccCCCCC-HHHHHHHhCC--CCcccH
Confidence 999999985 69999999999988754333 4455555443 444444
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.91 E-value=3.8e-27 Score=265.12 Aligned_cols=212 Identities=22% Similarity=0.328 Sum_probs=167.8
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc----
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV---- 284 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~---- 284 (489)
+..+|++++|.+++|+.+.+.+..++..++.|..+|..+++++|||||||||||+||+++|++++.+++.++++.+
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~ 551 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCC
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhh
Confidence 3468999999999999999988888888888888899999999999999999999999999999999999998886
Q ss_pred --CChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCc
Q 011286 285 --EGNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDE 360 (489)
Q Consensus 285 --~~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~ 360 (489)
.....++.+|..+ ..||||||||||.+...+....... ......+++.||+.||++... ..
T Consensus 552 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~-------------~~~~~~v~~~LL~~ld~~~~~--~~ 616 (806)
T 1ypw_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG-------------GGAADRVINQILTEMDGMSTK--KN 616 (806)
T ss_dssp TTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHH-------------HHHHHHHHHHHHTTCC--------C
T ss_pred cCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCc-------------chhHHHHHHHHHHHHhccccc--CC
Confidence 3457788888766 3589999999999975332110000 123467889999999998654 56
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHHh
Q 011286 361 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQLM 435 (489)
Q Consensus 361 ~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l~ 435 (489)
++||+|||+++.||||++|||||+.+|++++|+.+++..|++.++.........++..++.. .++|+++|.+++.
T Consensus 617 v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~ 692 (806)
T 1ypw_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp CBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865422222233444443 4599999998774
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=1.5e-22 Score=227.68 Aligned_cols=208 Identities=23% Similarity=0.330 Sum_probs=171.3
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC---
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE--- 285 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~--- 285 (489)
.+.+|++|+|.+++++.|.+.+..++..++.|..++..+++++||+||||||||+|++++|++++.+++.+++..+.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999987652
Q ss_pred ---ChHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCc
Q 011286 286 ---GNKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDE 360 (489)
Q Consensus 286 ---~~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~ 360 (489)
....++.+|... ..++||||||||.+...+.... ..........|+..++|.... ..
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~----------------~~~~~~~~~~Ll~ll~g~~~~--~~ 340 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH----------------GEVERRIVSQLLTLMDGLKQR--AH 340 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC----------------SHHHHHHHHHHHHHHHSSCTT--SC
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc----------------chHHHHHHHHHHHHhhhhccc--cc
Confidence 235567777665 3589999999999875321100 122456778899999998654 45
Q ss_pred eEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc-cCCCHHHHHHHH
Q 011286 361 RIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK-VEVTPADVAEQL 434 (489)
Q Consensus 361 ~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~spa~i~~~l 434 (489)
+++|+|||+++.+|+++.|+|||+..+.++.|+.+++..+++.++.........++..++.. ..++++++...+
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~ 415 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHH
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHH
Confidence 89999999999999999999999999999999999999999988765433323345566654 458999987765
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.82 E-value=3.4e-19 Score=180.25 Aligned_cols=196 Identities=16% Similarity=0.171 Sum_probs=147.5
Q ss_pred CCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
..|.. ...|.+|++++|.+..++.+...+..... +.....++||+||||||||++|+++|+.++.+++.+
T Consensus 17 ~~~~~--~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 17 ETYET--SLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred hhhhh--ccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 45765 56788999999999999998877764432 123456899999999999999999999999999999
Q ss_pred ecCccCChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccccc----
Q 011286 280 ELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWS---- 355 (489)
Q Consensus 280 ~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s---- 355 (489)
++..+.....+...+.....+++|||||||.+.. .....|+..++....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~---------------------------~~~~~Ll~~l~~~~~~~~~ 139 (338)
T 3pfi_A 87 AAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSP---------------------------AIEEVLYPAMEDYRLDIII 139 (338)
T ss_dssp EGGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCH---------------------------HHHHHHHHHHHTSCC----
T ss_pred cchhccchhHHHHHHHhccCCCEEEEechhhcCH---------------------------HHHHHHHHHHHhccchhhc
Confidence 9999888888999998888999999999998742 223344555543210
Q ss_pred ----------CCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHh-HHHHHhccC
Q 011286 356 ----------SCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE-VEELIEKVE 424 (489)
Q Consensus 356 ----------~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~~~~ 424 (489)
.....+++|++||....++++|++ ||+.+++|+.|+.+++..++..++...+..+.++ +..++....
T Consensus 140 ~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~ 217 (338)
T 3pfi_A 140 GSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSR 217 (338)
T ss_dssp -----CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTT
T ss_pred ccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC
Confidence 000137899999999999999999 9999999999999999999998887655544444 334444445
Q ss_pred CCHHHHHHHH
Q 011286 425 VTPADVAEQL 434 (489)
Q Consensus 425 ~spa~i~~~l 434 (489)
-++.++.+.+
T Consensus 218 G~~r~l~~~l 227 (338)
T 3pfi_A 218 STPRIALRLL 227 (338)
T ss_dssp TCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 5666665544
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.81 E-value=8.7e-21 Score=200.64 Aligned_cols=178 Identities=15% Similarity=0.077 Sum_probs=121.0
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC--CcEEEeecCccC-
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN--FDVYDLELSSVE- 285 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~--~~~~~l~~s~~~- 285 (489)
+...|++++|.+++|+.+...+..+ +.|..+++++|||||||||||++|+++|++++ .+++.++++.+.
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3457899999999999887765432 23667789999999999999999999999999 999999998762
Q ss_pred ----ChHHHHHHHHHc-----cCCeEEEEccchhhhhhhhhHHhhhhcc--cccccccc-cCCCchhhHHHHHHHhhccc
Q 011286 286 ----GNKDLRQILIAT-----ENKSILVVEDIDCCLEMQDRLAKAKAAI--PDLYRSAC-NQGNRFQVTLSGLLNFIDGL 353 (489)
Q Consensus 286 ----~~~~L~~l~~~~-----~~~sIL~iDdiD~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~ls~LL~~ldgl 353 (489)
....++++|..+ ..|+||||||||.++..+.......... ........ ..........+.++..++..
T Consensus 104 ~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 104 TEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred HhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 223488888776 4689999999999986443221100000 00000000 00011123334566666533
Q ss_pred ccCCCCceEEEEecCCCCCCCccccCCCceee--EEEeCCCCH
Q 011286 354 WSSCGDERIIIFTTNHKDRLDPALLRPGRMDV--HIHMSYCTP 394 (489)
Q Consensus 354 ~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~--~I~~~~p~~ 394 (489)
....++.++|++|||+++.+|+++.||||||. .+.+|.|+.
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 22345556777999999999999999999999 667777754
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.80 E-value=4.9e-19 Score=176.54 Aligned_cols=180 Identities=17% Similarity=0.222 Sum_probs=137.2
Q ss_pred cc-cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCC---ceEEEECCCCCcHHHHHHHHHHHc-------CCcEEEeec
Q 011286 213 FD-TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYL-------NFDVYDLEL 281 (489)
Q Consensus 213 fd-~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~---rg~LL~GPpGtGKTsla~aiA~~l-------~~~~~~l~~ 281 (489)
++ +++|.+++|+.|.+.+..+.. +..+.+.|...+ .++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 44 699999999999988876553 666777776543 469999999999999999999998 338899988
Q ss_pred CccC------ChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccccc
Q 011286 282 SSVE------GNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWS 355 (489)
Q Consensus 282 s~~~------~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s 355 (489)
+.+. ....+..+|... .++||||||+|.+...+.. .......++.|++.++..
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~------------------~~~~~~~~~~Ll~~l~~~-- 166 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDNE------------------RDYGQEAIEILLQVMENN-- 166 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCCCC---------------------CCTHHHHHHHHHHHHHC--
T ss_pred HHhhhhcccccHHHHHHHHHhc-CCCEEEEEChhhhccCCCc------------------ccccHHHHHHHHHHHhcC--
Confidence 8762 234556666554 5789999999998642110 123456778888888863
Q ss_pred CCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHH
Q 011286 356 SCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEE 418 (489)
Q Consensus 356 ~~g~~~iiI~TTN~~~-----~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~ 418 (489)
...+++|+|||..+ .++|+|.+ ||+.+|+|++|+.+++..|++.++...+..+.++...
T Consensus 167 --~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~ 230 (309)
T 3syl_A 167 --RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAET 230 (309)
T ss_dssp --TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHH
T ss_pred --CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 24578899998654 35899999 9999999999999999999999998666555554443
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.79 E-value=4.1e-18 Score=170.88 Aligned_cols=192 Identities=21% Similarity=0.206 Sum_probs=146.9
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCC
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG 286 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~ 286 (489)
...|.+|++++|.+..++.+...+...... ...+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH--------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc--------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 356889999999999998887776644221 123578999999999999999999999999999999999887
Q ss_pred hHHHHHHHHH-ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccc-----cC----
Q 011286 287 NKDLRQILIA-TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLW-----SS---- 356 (489)
Q Consensus 287 ~~~L~~l~~~-~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~-----s~---- 356 (489)
...+...+.. ...+++|||||||.+.. .....|+..++... ..
T Consensus 77 ~~~l~~~l~~~~~~~~~l~lDEi~~l~~---------------------------~~~~~L~~~l~~~~~~~v~~~~~~~ 129 (324)
T 1hqc_A 77 PGDLAAILANSLEEGDILFIDEIHRLSR---------------------------QAEEHLYPAMEDFVMDIVIGQGPAA 129 (324)
T ss_dssp HHHHHHHHTTTCCTTCEEEETTTTSCCH---------------------------HHHHHHHHHHHHSEEEECCSSSSSC
T ss_pred hHHHHHHHHHhccCCCEEEEECCccccc---------------------------chHHHHHHHHHhhhhHHhccccccc
Confidence 8888888776 67789999999998742 11233444444321 00
Q ss_pred -----CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHh-HHHHHhccCCCHHHH
Q 011286 357 -----CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE-VEELIEKVEVTPADV 430 (489)
Q Consensus 357 -----~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~~~~~spa~i 430 (489)
....+++|++||.++.++++|.+ ||+.++.++.|+.+++..++..++...+..+.++ +..++....-.|.++
T Consensus 130 ~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l 207 (324)
T 1hqc_A 130 RTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVA 207 (324)
T ss_dssp CCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHH
T ss_pred cccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHH
Confidence 01247899999999999999998 9998999999999999999999887665555444 445555556778887
Q ss_pred HHHHh
Q 011286 431 AEQLM 435 (489)
Q Consensus 431 ~~~l~ 435 (489)
.+.+.
T Consensus 208 ~~~l~ 212 (324)
T 1hqc_A 208 KRLFR 212 (324)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 34
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.77 E-value=8.3e-20 Score=191.04 Aligned_cols=162 Identities=14% Similarity=0.153 Sum_probs=73.4
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhCC-CCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC--------
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-------- 285 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~-~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~-------- 285 (489)
.|+|+++.|+.+...+..++++...+..++. .+++++||+||||||||++|+++|+.++.+++.++++.+.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 6899999999998888777666655544433 3678999999999999999999999999999999986642
Q ss_pred ChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEE
Q 011286 286 GNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIF 365 (489)
Q Consensus 286 ~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~ 365 (489)
....++.+|..... ++++||+|.+... .. ......+++.||+.|||+.+.. . + ++
T Consensus 96 ~e~~lr~lf~~a~~--~~~~De~d~~~~~---~~----------------~~~e~rvl~~LL~~~dg~~~~~--~-v-~a 150 (444)
T 1g41_A 96 VDSIIRDLTDSAMK--LVRQQEIAKNRAR---AE----------------DVAEERILDALLPPAKNQWGEV--E-N-HD 150 (444)
T ss_dssp THHHHHHHHHHHHH--HHHHHHHHSCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHh--cchhhhhhhhhcc---ch----------------hhHHHHHHHHHHHHhhcccccc--c-c-cc
Confidence 34566666655432 3347777765321 10 2335688999999999996542 2 3 44
Q ss_pred e-cCCCCCCCccccCCCceeeEEEeCCCCHH-HHHHHH
Q 011286 366 T-TNHKDRLDPALLRPGRMDVHIHMSYCTPC-GFKMLA 401 (489)
Q Consensus 366 T-TN~~~~LDpALlRpGRfd~~I~~~~p~~~-~~~~l~ 401 (489)
+ ||+++.|||||+||||||.+|+++.|+.. .+.+++
T Consensus 151 ~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 151 SHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------------------
T ss_pred ccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 4 99999999999999999999999999987 454443
No 35
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.75 E-value=1.6e-17 Score=167.02 Aligned_cols=196 Identities=17% Similarity=0.159 Sum_probs=140.3
Q ss_pred CCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
..|.. ...|.+|++++|.+++++.+...+. ....+..+|++||||||||++++++|++++.+++.+
T Consensus 14 ~~~~~--k~rP~~~~~ivg~~~~~~~l~~~l~------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 14 HILEQ--KYRPSTIDECILPAFDKETFKSITS------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp SSHHH--HSCCCSTTTSCCCHHHHHHHHHHHH------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred chHHH--hhCCCCHHHHhCcHHHHHHHHHHHH------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 46765 5789999999999998887766554 123456789999999999999999999999999999
Q ss_pred ecCccCChHHHHHHHHHc----c---CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc
Q 011286 280 ELSSVEGNKDLRQILIAT----E---NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG 352 (489)
Q Consensus 280 ~~s~~~~~~~L~~l~~~~----~---~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 352 (489)
+++... ...++..+... + .+.||||||+|.+.. ......|+..++.
T Consensus 80 ~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------------------------~~~~~~L~~~le~ 132 (324)
T 3u61_B 80 NGSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------------------------AESQRHLRSFMEA 132 (324)
T ss_dssp ETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--------------------------HHHHHHHHHHHHH
T ss_pred cccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc--------------------------HHHHHHHHHHHHh
Confidence 988765 55666554332 1 578999999998841 1123446666665
Q ss_pred cccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHh--ccCCCHHHH
Q 011286 353 LWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIE--KVEVTPADV 430 (489)
Q Consensus 353 l~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~--~~~~spa~i 430 (489)
.. ..+.+|+|||.+..++++|.+ |+. +++|+.|+.+++..++..++.. +...+. ...+++.++
T Consensus 133 ~~----~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~--------l~~~~~~~~~~~~~~~~ 197 (324)
T 3u61_B 133 YS----SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRR--------LTEICKHEGIAIADMKV 197 (324)
T ss_dssp HG----GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHH--------HHHHHHHHTCCBSCHHH
T ss_pred CC----CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH--------HHHHHHHcCCCCCcHHH
Confidence 32 347889999999999999999 885 6999999999988877765431 222222 234544233
Q ss_pred HHHHhc--CCCHHHHHHHHHHHH
Q 011286 431 AEQLMR--DEVPKIALSGLIQFL 451 (489)
Q Consensus 431 ~~~l~~--~~~~~~al~~l~~~l 451 (489)
.+.+.+ .++...|+..+..+.
T Consensus 198 ~~~l~~~~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 198 VAALVKKNFPDFRKTIGELDSYS 220 (324)
T ss_dssp HHHHHHHTCSCTTHHHHHHHHHG
T ss_pred HHHHHHhCCCCHHHHHHHHHHHh
Confidence 333332 367777777776665
No 36
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.75 E-value=6e-17 Score=151.59 Aligned_cols=163 Identities=18% Similarity=0.208 Sum_probs=121.3
Q ss_pred CceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCc
Q 011286 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFD 275 (489)
Q Consensus 201 ~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~ 275 (489)
.|.. ...|.+|++++|.++.++.+.+.+.. ....++||+||||||||++++++|+.+ ...
T Consensus 6 ~~~~--~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~ 70 (226)
T 2chg_A 6 IWVE--KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDN 70 (226)
T ss_dssp CHHH--HTSCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGG
T ss_pred hHHH--hcCCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccc
Confidence 3543 46788999999999888877665531 122359999999999999999999986 456
Q ss_pred EEEeecCccCChHHHHHHHHHc--------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHH
Q 011286 276 VYDLELSSVEGNKDLRQILIAT--------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLL 347 (489)
Q Consensus 276 ~~~l~~s~~~~~~~L~~l~~~~--------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 347 (489)
++.++++...+...+...+... ..+.||+|||+|.+.. .....|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------------------~~~~~l~ 123 (226)
T 2chg_A 71 FIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------------------DAQAALR 123 (226)
T ss_dssp EEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---------------------------HHHHHHH
T ss_pred eEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---------------------------HHHHHHH
Confidence 8888887766555555544322 4579999999998742 1223455
Q ss_pred HhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 348 NFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 348 ~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
..++.. .....+|+|||.++.+++++.+ |+. .+++++++.++...++..++...+..+
T Consensus 124 ~~l~~~----~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (226)
T 2chg_A 124 RTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKI 181 (226)
T ss_dssp HHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCB
T ss_pred HHHHhc----CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 555543 2457889999999999999999 887 899999999999999988775444333
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.74 E-value=8.1e-18 Score=167.14 Aligned_cols=218 Identities=15% Similarity=0.219 Sum_probs=141.6
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHh-CCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCC-------
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG------- 286 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~-g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~------- 286 (489)
.++|.++.++.+...+...+......... +...+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 48999999999988776543321111000 1134678999999999999999999999999999999887632
Q ss_pred -hHHHHHHHHHc-------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccccc---
Q 011286 287 -NKDLRQILIAT-------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWS--- 355 (489)
Q Consensus 287 -~~~L~~l~~~~-------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s--- 355 (489)
...++.++... ..++||||||||.+......... ........+.|+..+++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~---------------~~~~~~~~~~Ll~~le~~~~~~~ 160 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGA---------------DVSREGVQRDLLPLVEGSTVSTK 160 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSS---------------HHHHHHHHHHHHHHHHCCEEEET
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccccc---------------chhHHHHHHHHHHHhcCCeEecc
Confidence 24466665533 34799999999998642110000 01112345678888886421
Q ss_pred ---CCCCceEEEEe----cCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhc----cC
Q 011286 356 ---SCGDERIIIFT----TNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEK----VE 424 (489)
Q Consensus 356 ---~~g~~~iiI~T----TN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~----~~ 424 (489)
.....+++|++ ++.+..++|+|++ ||+.+|+|++|+.+++..|++..+. .+.......+.. ..
T Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~----~~~~~~~~~~~~~~~~~~ 234 (310)
T 1ofh_A 161 HGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHA----SLTEQYKALMATEGVNIA 234 (310)
T ss_dssp TEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTT----CHHHHHHHHHHHTTCEEE
T ss_pred cccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHH----HHHHHHHHHHHhcCCeec
Confidence 01235788888 5678899999998 9999999999999999999985332 122222222221 23
Q ss_pred CCHHHHHHHHhc---------CCCHHHHHHHHHHHHHH
Q 011286 425 VTPADVAEQLMR---------DEVPKIALSGLIQFLQI 453 (489)
Q Consensus 425 ~spa~i~~~l~~---------~~~~~~al~~l~~~l~~ 453 (489)
+++..+..+... .+++..+...+...+..
T Consensus 235 ~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~ 272 (310)
T 1ofh_A 235 FTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDK 272 (310)
T ss_dssp ECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHH
T ss_pred cCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHh
Confidence 666555443322 36666666666555543
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.73 E-value=2.5e-16 Score=160.73 Aligned_cols=166 Identities=18% Similarity=0.201 Sum_probs=115.5
Q ss_pred CCCC-cccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC--cEEEeecCccC
Q 011286 209 HPAT-FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELSSVE 285 (489)
Q Consensus 209 ~p~~-fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~--~~~~l~~s~~~ 285 (489)
.|.. |++++|.+..++.+...+. .+ ..|..+++++||+||||||||++|+++|+.++. +++.+++..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~-~~-------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLE-MI-------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHH-HH-------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHH-HH-------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 4554 9999999999887644332 22 124555789999999999999999999999975 67776654310
Q ss_pred --------------------------------------------------C-----hHHHHHHHHHcc-----------C
Q 011286 286 --------------------------------------------------G-----NKDLRQILIATE-----------N 299 (489)
Q Consensus 286 --------------------------------------------------~-----~~~L~~l~~~~~-----------~ 299 (489)
+ ...++..+.... .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 1 234444443321 1
Q ss_pred CeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEec-----------C
Q 011286 300 KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTT-----------N 368 (489)
Q Consensus 300 ~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TT-----------N 368 (489)
|+||||||||.+.. ..++.|+..++.. ...+++++|. |
T Consensus 190 ~~vl~IDEi~~l~~---------------------------~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~ 238 (368)
T 3uk6_A 190 PGVLFIDEVHMLDI---------------------------ESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQ 238 (368)
T ss_dssp BCEEEEESGGGSBH---------------------------HHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCE
T ss_pred CceEEEhhccccCh---------------------------HHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCC
Confidence 57999999998732 3345666666553 1234444443 3
Q ss_pred CCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhH
Q 011286 369 HKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEV 416 (489)
Q Consensus 369 ~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i 416 (489)
.++.++++|++ ||.. ++|++|+.+++..+++.++...+..+.++.
T Consensus 239 ~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~ 283 (368)
T 3uk6_A 239 SPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDA 283 (368)
T ss_dssp EETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred CcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 57889999999 9977 899999999999999988876555554443
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.73 E-value=9.2e-17 Score=157.73 Aligned_cols=167 Identities=23% Similarity=0.224 Sum_probs=115.2
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC-------C
Q 011286 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE-------G 286 (489)
Q Consensus 214 d~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~-------~ 286 (489)
+.+++....-+.++.....+. ......+...++++||+||||||||++|+++|+.++.+++.+++++.. .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 345666555555655432221 223334566778999999999999999999999999999999876521 1
Q ss_pred hHHHHHHHHHc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEE
Q 011286 287 NKDLRQILIAT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIII 364 (489)
Q Consensus 287 ~~~L~~l~~~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI 364 (489)
...++.+|... ..++||||||||.+++..... .......+..|+..+++... .+..++||
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-----------------~~~~~~~l~~L~~~~~~~~~-~~~~~~ii 171 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-----------------PRFSNLVLQALLVLLKKAPP-QGRKLLII 171 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-----------------TBCCHHHHHHHHHHTTCCCS-TTCEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-----------------hhHHHHHHHHHHHHhcCccC-CCCCEEEE
Confidence 24566677654 458999999999986521100 12234556666677776532 34568899
Q ss_pred EecCCCCCCCc-cccCCCceeeEEEeCCCCH-HHHHHHHHH
Q 011286 365 FTTNHKDRLDP-ALLRPGRMDVHIHMSYCTP-CGFKMLASN 403 (489)
Q Consensus 365 ~TTN~~~~LDp-ALlRpGRfd~~I~~~~p~~-~~~~~l~~~ 403 (489)
+|||.++.+|+ .+.+ ||+..|++|.++. ++...++..
T Consensus 172 ~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp EEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred EecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh
Confidence 99999999988 5555 9999999988776 555555544
No 40
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=1.2e-16 Score=171.46 Aligned_cols=181 Identities=17% Similarity=0.245 Sum_probs=125.0
Q ss_pred CCCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcH-HHHHHhCC---CCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 199 TEIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRK-EFYKRVGK---AWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 199 ~~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~-~~y~~~g~---~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
...|.. ...|.+|++++|.++.++.+.+.+..+.... ..|...|. +.++++||+||||||||++|+++|++++.
T Consensus 26 ~~lW~e--kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 26 DKLWTV--KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp CCCHHH--HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCccc--ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 346866 5789999999999999999888877554321 22333333 35689999999999999999999999999
Q ss_pred cEEEeecCccCChHHHHHHHH-------------H-------ccCCeEEEEccchhhhhhhhhHHhhhhccccccccccc
Q 011286 275 DVYDLELSSVEGNKDLRQILI-------------A-------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACN 334 (489)
Q Consensus 275 ~~~~l~~s~~~~~~~L~~l~~-------------~-------~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (489)
+++.++++.......+...+. . ...++||||||+|.+..
T Consensus 104 ~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~--------------------- 162 (516)
T 1sxj_A 104 DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG--------------------- 162 (516)
T ss_dssp EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT---------------------
T ss_pred CEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch---------------------
Confidence 999999998765544433322 1 14578999999998853
Q ss_pred CCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCCh
Q 011286 335 QGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 413 (489)
Q Consensus 335 ~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 413 (489)
.....+..|++.++.. +..+|+|+++.....++ .+. |+...|.|+.|+.+++..++...+...+..+.
T Consensus 163 ---~~~~~l~~L~~~l~~~----~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~ 230 (516)
T 1sxj_A 163 ---GDRGGVGQLAQFCRKT----STPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLD 230 (516)
T ss_dssp ---TSTTHHHHHHHHHHHC----SSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred ---hhHHHHHHHHHHHHhc----CCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 1122345566666542 12244444444444454 344 44568999999999999988877655444443
No 41
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.70 E-value=6e-16 Score=146.33 Aligned_cols=164 Identities=17% Similarity=0.281 Sum_probs=120.9
Q ss_pred CceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------
Q 011286 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------ 274 (489)
Q Consensus 201 ~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------ 274 (489)
.|.. ...|.+|++++|.+..++.+...+.. | ..+..++|+||||||||++++++++.++.
T Consensus 12 ~~~~--~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~ 77 (250)
T 1njg_A 12 VLAR--KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA 77 (250)
T ss_dssp CHHH--HTCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS
T ss_pred HHhh--ccCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 4543 46788999999999888877665541 1 22458999999999999999999998743
Q ss_pred ------------------cEEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhccccccc
Q 011286 275 ------------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYR 330 (489)
Q Consensus 275 ------------------~~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~ 330 (489)
+++.++.........++.++.... .+.||||||+|.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~----------------- 140 (250)
T 1njg_A 78 TPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR----------------- 140 (250)
T ss_dssp SCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------------
T ss_pred CCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------------
Confidence 344555443334456667766542 478999999998631
Q ss_pred ccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCC
Q 011286 331 SACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEH 410 (489)
Q Consensus 331 ~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~ 410 (489)
..+..|+..++.. ...+++|++||.++.+++++.+ |+ .++++++++.++...++..++...+.
T Consensus 141 ----------~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 141 ----------HSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp ----------HHHHHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 2345566666653 3458899999999999999998 75 67999999999999999988865444
Q ss_pred CC
Q 011286 411 PL 412 (489)
Q Consensus 411 ~l 412 (489)
.+
T Consensus 204 ~~ 205 (250)
T 1njg_A 204 AH 205 (250)
T ss_dssp CB
T ss_pred CC
Confidence 43
No 42
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.70 E-value=4.2e-18 Score=174.49 Aligned_cols=175 Identities=17% Similarity=0.212 Sum_probs=118.1
Q ss_pred ccCCHHHHHHHHHHHHHHHhcHHHHHH-hCC-CCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCC-------
Q 011286 216 LAMDFDMKKMIMDDLERFLKRKEFYKR-VGK-AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG------- 286 (489)
Q Consensus 216 l~~~~~~K~~i~~~l~~~l~~~~~y~~-~g~-~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~------- 286 (489)
|+|++..++.+...+............ .+. ..+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 689999999998888655433221000 111 25678999999999999999999999999999999987642
Q ss_pred -hHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccC---
Q 011286 287 -NKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSS--- 356 (489)
Q Consensus 287 -~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~--- 356 (489)
...+..++... ..++||||||||.+...+...+... ......+.+.||..|||....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~-------------~~~~~~~~~~Ll~~leg~~~~~~~ 163 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITR-------------DVSGEGVQQALLKLIEGTVAAVPP 163 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---C-------------HHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccccccccc-------------ccchHHHHHHHHHHhcCceeeccC
Confidence 23455565544 3579999999999864221110000 011234788899999964210
Q ss_pred --------------CCCceEEEEecCCC----------CC-----------------------------------CCccc
Q 011286 357 --------------CGDERIIIFTTNHK----------DR-----------------------------------LDPAL 377 (489)
Q Consensus 357 --------------~g~~~iiI~TTN~~----------~~-----------------------------------LDpAL 377 (489)
...++++|+|+|.. .. +.|+|
T Consensus 164 ~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l 243 (363)
T 3hws_A 164 QGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEF 243 (363)
T ss_dssp ----------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHH
T ss_pred ccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHH
Confidence 11223444444432 11 68888
Q ss_pred cCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011286 378 LRPGRMDVHIHMSYCTPCGFKMLASNYL 405 (489)
Q Consensus 378 lRpGRfd~~I~~~~p~~~~~~~l~~~~l 405 (489)
+. |||.++.|++|+.+.+..|+...+
T Consensus 244 ~~--R~~~~~~~~pl~~~~~~~I~~~~~ 269 (363)
T 3hws_A 244 IG--RLPVVATLNELSEEALIQILKEPK 269 (363)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSST
T ss_pred hc--ccCeeeecCCCCHHHHHHHHHHHH
Confidence 87 999999999999999999988633
No 43
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.69 E-value=4e-17 Score=149.27 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=107.6
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEE
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 277 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~ 277 (489)
..|.+|++++|.++..+.+.+.+. ...++++||+||||||||++++++|+.+ +.+++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T 1jbk_A 16 AEQGKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 82 (195)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhhccccccccchHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence 347789999999888777766543 2335789999999999999999999997 78888
Q ss_pred EeecCccC--------ChHHHHHHHHH---ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHH
Q 011286 278 DLELSSVE--------GNKDLRQILIA---TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGL 346 (489)
Q Consensus 278 ~l~~s~~~--------~~~~L~~l~~~---~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 346 (489)
.+++..+. ....+..++.. ...++||+|||+|.+........ .......+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~----------------~~~~~~~l~-- 144 (195)
T 1jbk_A 83 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG----------------AMDAGNMLK-- 144 (195)
T ss_dssp EECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT----------------------CCCCHHHHH--
T ss_pred EeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc----------------hHHHHHHHH--
Confidence 88876542 12234455543 34588999999999864221100 111222222
Q ss_pred HHhhcccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 011286 347 LNFIDGLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLA 401 (489)
Q Consensus 347 L~~ldgl~s~~g~~~iiI~TTN~~~-----~LDpALlRpGRfd~~I~~~~p~~~~~~~l~ 401 (489)
..++. ..+.+|++||.++ .+|+++.+ ||+ .|+++.|+.+++.+++
T Consensus 145 -~~~~~------~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 145 -PALAR------GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -HHHHT------TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred -Hhhcc------CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 22322 3467888888876 78999999 998 6999999999988764
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.68 E-value=3.8e-16 Score=164.51 Aligned_cols=151 Identities=23% Similarity=0.335 Sum_probs=113.2
Q ss_pred cCCCCCcccccCCHHHH---HHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCc
Q 011286 207 LDHPATFDTLAMDFDMK---KMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K---~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~ 283 (489)
...|.+|++++|++.+. +.+...+.. |. ..++|||||||||||++|++||+.++.+++.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH--LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 45789999999998887 455444431 22 268999999999999999999999999999998765
Q ss_pred cCChHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCC
Q 011286 284 VEGNKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSC 357 (489)
Q Consensus 284 ~~~~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~ 357 (489)
. +...++.++... ..++||||||||.+.. .....||..++.
T Consensus 86 ~-~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~---------------------------~~q~~LL~~le~----- 132 (447)
T 3pvs_A 86 S-GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK---------------------------SQQDAFLPHIED----- 132 (447)
T ss_dssp C-CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------------------CCHHHHHT-----
T ss_pred C-CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH---------------------------HHHHHHHHHHhc-----
Confidence 4 355666666544 3589999999998832 122346666665
Q ss_pred CCceEEEEec--CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011286 358 GDERIIIFTT--NHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 407 (489)
Q Consensus 358 g~~~iiI~TT--N~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 407 (489)
..+++|++| |....++++|++ |+. .+.|+.|+.+++..++..++..
T Consensus 133 -~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 133 -GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp -TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred -CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 235566555 455689999999 886 5889999999999999998865
No 45
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.68 E-value=2.4e-16 Score=157.00 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=120.2
Q ss_pred CceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCc
Q 011286 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFD 275 (489)
Q Consensus 201 ~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~ 275 (489)
.|.. ...|.+|++++|.+..++.+...+. . |. ..++|||||||||||++++++|+.+ +.+
T Consensus 6 ~~~~--k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~ 70 (319)
T 2chq_A 6 IWVE--KYRPRTLDEVVGQDEVIQRLKGYVE----R-------KN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDN 70 (319)
T ss_dssp CTTT--TTSCSSGGGSCSCHHHHHHHHTTTT----T-------TC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHH--hcCCCCHHHHhCCHHHHHHHHHHHh----C-------CC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCC
Confidence 4543 5778999999999988887765443 1 22 2249999999999999999999987 456
Q ss_pred EEEeecCccCChHHHHHHHHH----c----cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHH
Q 011286 276 VYDLELSSVEGNKDLRQILIA----T----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLL 347 (489)
Q Consensus 276 ~~~l~~s~~~~~~~L~~l~~~----~----~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 347 (489)
++.++++...+...++..+.. . ..+.||+|||+|.+.. .....|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------------------~~~~~L~ 123 (319)
T 2chq_A 71 FIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------------------DAQAALR 123 (319)
T ss_dssp CEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH---------------------------HHHHTTG
T ss_pred eEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH---------------------------HHHHHHH
Confidence 788888765433333332221 1 3478999999998742 1234455
Q ss_pred HhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChH
Q 011286 348 NFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFL 414 (489)
Q Consensus 348 ~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~ 414 (489)
..++.. ...+++|++||.++.+++++.+ |+. .++|++|+.+++..++..++...+..+.+
T Consensus 124 ~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~ 183 (319)
T 2chq_A 124 RTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITE 183 (319)
T ss_dssp GGTSSS----SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCH
T ss_pred HHHHhc----CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 666553 3457889999999999999998 875 79999999999999998887655544433
No 46
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.65 E-value=2.2e-15 Score=153.66 Aligned_cols=160 Identities=16% Similarity=0.123 Sum_probs=114.9
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEeecC
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELS 282 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~~~~l~~s 282 (489)
.++.++|.++..+.+...+...+. ...+++++|+||||||||++++++++.+ +.+++.+++.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 458899998888887765543221 2345789999999999999999999998 8888899987
Q ss_pred ccCCh----------------------HH-HHHHHHH---ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 283 SVEGN----------------------KD-LRQILIA---TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 283 ~~~~~----------------------~~-L~~l~~~---~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
...+. .. +..++.. ...++||||||+|.+...
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~---------------------- 145 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKR---------------------- 145 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHS----------------------
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhccc----------------------
Confidence 64321 12 2222222 234789999999998531
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCC---CCCCccccCCCceee-EEEeCCCCHHHHHHHHHHhhC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHK---DRLDPALLRPGRMDV-HIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~---~~LDpALlRpGRfd~-~I~~~~p~~~~~~~l~~~~l~ 406 (489)
......+..+++.++.... +..+++|++||.+ +.+++++.+ ||.. .|+|++++.+++..++...+.
T Consensus 146 ~~~~~~l~~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 146 PGGQDLLYRITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp TTHHHHHHHHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred CCCChHHHhHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 1124556667766654310 2457899999987 788999998 8875 899999999999999998875
No 47
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=1.1e-15 Score=152.65 Aligned_cols=165 Identities=16% Similarity=0.204 Sum_probs=119.7
Q ss_pred CCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----C
Q 011286 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----F 274 (489)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-----~ 274 (489)
..|.. ...|.+|++++|.++.++.+...+.. |. ..++||+||||||||++++++|+.+. .
T Consensus 13 ~~~~~--k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~ 77 (327)
T 1iqp_A 13 KPWVE--KYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS--MPHLLFAGPPGVGKTTAALALARELFGENWRH 77 (327)
T ss_dssp SCHHH--HTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHH
T ss_pred Cchhh--ccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccC
Confidence 35665 57899999999999988887765531 22 23599999999999999999999863 3
Q ss_pred cEEEeecCccCChHHHHHHHHH----c----cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHH
Q 011286 275 DVYDLELSSVEGNKDLRQILIA----T----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGL 346 (489)
Q Consensus 275 ~~~~l~~s~~~~~~~L~~l~~~----~----~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 346 (489)
+++.+++++..+...++..+.. . ..+.||+|||+|.+.. ...+.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------------------~~~~~L 130 (327)
T 1iqp_A 78 NFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------------------DAQQAL 130 (327)
T ss_dssp HEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---------------------------HHHHHH
T ss_pred ceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH---------------------------HHHHHH
Confidence 4778887764322333322221 1 3478999999998732 223456
Q ss_pred HHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCCh
Q 011286 347 LNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLF 413 (489)
Q Consensus 347 L~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~ 413 (489)
+..++.. .....+|++||.++.+++++.+ |+. .++|++++.++...++..++...+..+.
T Consensus 131 ~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 190 (327)
T 1iqp_A 131 RRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELT 190 (327)
T ss_dssp HHHHHHT----TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEEC
T ss_pred HHHHHhc----CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCC
Confidence 6666653 2457788899999999999998 876 7999999999999999887765544443
No 48
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=1.3e-15 Score=154.05 Aligned_cols=164 Identities=17% Similarity=0.202 Sum_probs=119.2
Q ss_pred CCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC------
Q 011286 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN------ 273 (489)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~------ 273 (489)
..|.. ...|.+|++++|.+++++.+...+. . |. ..++||+||||||||++++++|+.++
T Consensus 25 ~~~~~--k~~p~~~~~i~g~~~~~~~l~~~l~----~-------~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~ 89 (353)
T 1sxj_D 25 QPWVE--KYRPKNLDEVTAQDHAVTVLKKTLK----S-------AN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMK 89 (353)
T ss_dssp -CHHH--HTCCSSTTTCCSCCTTHHHHHHHTT----C-------TT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHH--hcCCCCHHHhhCCHHHHHHHHHHHh----c-------CC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccc
Confidence 35665 5689999999999998887765443 1 11 23499999999999999999999864
Q ss_pred CcEEEeecCccCChHHHHHHHH---H---------------ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccC
Q 011286 274 FDVYDLELSSVEGNKDLRQILI---A---------------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQ 335 (489)
Q Consensus 274 ~~~~~l~~s~~~~~~~L~~l~~---~---------------~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (489)
..++.+++++..+...++..+. . ...+.||+|||+|.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~---------------------- 147 (353)
T 1sxj_D 90 SRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA---------------------- 147 (353)
T ss_dssp TSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH----------------------
T ss_pred cceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH----------------------
Confidence 4688888887654444443332 1 12456999999998742
Q ss_pred CCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 336 GNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 336 ~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
...+.|+..++... ....+|++||+++.+++++.+ |+. .++|++++.++...++...+...+..+
T Consensus 148 -----~~~~~Ll~~le~~~----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i 212 (353)
T 1sxj_D 148 -----DAQSALRRTMETYS----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKC 212 (353)
T ss_dssp -----HHHHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCC
T ss_pred -----HHHHHHHHHHHhcC----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCC
Confidence 12345666666532 335677889999999999998 886 799999999999998888775544433
No 49
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.65 E-value=2.8e-15 Score=151.21 Aligned_cols=154 Identities=14% Similarity=0.170 Sum_probs=109.4
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHH
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKD 289 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~ 289 (489)
|..++.++|.+++++.+...+.. +.++||+||||||||++|+++|+.++.+++.++++.-....+
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSD 87 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHH
T ss_pred HHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhh
Confidence 44577889998888877665431 358999999999999999999999999999988753322222
Q ss_pred HHHHH--H-------HccC---CeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc-----
Q 011286 290 LRQIL--I-------ATEN---KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG----- 352 (489)
Q Consensus 290 L~~l~--~-------~~~~---~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg----- 352 (489)
+.... . .... .+||||||||.+.. .+.+.|+..|+.
T Consensus 88 l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~---------------------------~~~~~Ll~~l~~~~~~~ 140 (331)
T 2r44_A 88 LIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA---------------------------KVQSALLECMQEKQVTI 140 (331)
T ss_dssp HHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH---------------------------HHHHHHHHHHHHSEEEE
T ss_pred cCCceeecCCCCceEeccCcccccEEEEEccccCCH---------------------------HHHHHHHHHHhcCceee
Confidence 21100 0 0011 37999999998632 233445555442
Q ss_pred --cccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011286 353 --LWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 407 (489)
Q Consensus 353 --l~s~~g~~~iiI~TTN~~~-----~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 407 (489)
.....+..+++|+|+|..+ .++++|++ ||+.++++++|+.+++..|++..+..
T Consensus 141 ~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 141 GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 1111234577888888543 38999999 99999999999999999999998764
No 50
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.64 E-value=2.5e-16 Score=169.87 Aligned_cols=160 Identities=21% Similarity=0.164 Sum_probs=112.6
Q ss_pred cccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChH----
Q 011286 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNK---- 288 (489)
Q Consensus 213 fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~---- 288 (489)
.++++|.+++++.+.+.+....... ...+..+||+||||||||+|+++||+.++.++..++++.+....
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~-------~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTK-------SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSS-------SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcc-------cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 4568999999998866554221111 11455799999999999999999999999999999988753321
Q ss_pred -----------HHHHHHHHcc-CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccC
Q 011286 289 -----------DLRQILIATE-NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSS 356 (489)
Q Consensus 289 -----------~L~~l~~~~~-~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~ 356 (489)
.+...|..+. ...||||||||.+.... .....+.||..||.....
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~-----------------------~~~~~~~LL~~ld~~~~~ 209 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDF-----------------------RGDPSSAMLEVLDPEQNS 209 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC--------------------------------CCGGGTCTTTTT
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhh-----------------------ccCHHHHHHHHHhhhhcc
Confidence 2233444442 35599999999985411 112345567777643211
Q ss_pred -----------CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011286 357 -----------CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYL 405 (489)
Q Consensus 357 -----------~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l 405 (489)
.-..++||+|||.++.+||+|++ ||+ .|+|+.|+.+++..|++.++
T Consensus 210 ~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 210 SFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp BCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred eeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 01357999999999999999999 996 69999999999999999987
No 51
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=2.7e-15 Score=149.57 Aligned_cols=163 Identities=13% Similarity=0.198 Sum_probs=121.0
Q ss_pred CceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCc
Q 011286 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFD 275 (489)
Q Consensus 201 ~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~ 275 (489)
.|.. ...|.+|++++|.+..++.+...+. . |. .+ .+|||||||||||++++++|+.+ +.+
T Consensus 10 ~~~~--~~~p~~~~~~~g~~~~~~~l~~~l~----~-------~~-~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~ 74 (323)
T 1sxj_B 10 PWVE--KYRPQVLSDIVGNKETIDRLQQIAK----D-------GN-MP-HMIISGMPGIGKTTSVHCLAHELLGRSYADG 74 (323)
T ss_dssp CHHH--HTCCSSGGGCCSCTHHHHHHHHHHH----S-------CC-CC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred cHHH--hcCCCCHHHHHCCHHHHHHHHHHHH----c-------CC-CC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCC
Confidence 5654 4678999999999998887766543 1 22 22 39999999999999999999986 456
Q ss_pred EEEeecCccCChHHHHHHHHHc--------c-CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHH
Q 011286 276 VYDLELSSVEGNKDLRQILIAT--------E-NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGL 346 (489)
Q Consensus 276 ~~~l~~s~~~~~~~L~~l~~~~--------~-~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 346 (489)
++.+++++..+...++.++... . ++.||+|||+|.+.. .....|
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------------------------~~~~~L 127 (323)
T 1sxj_B 75 VLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------------------------GAQQAL 127 (323)
T ss_dssp EEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------------------------HHHHTT
T ss_pred EEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---------------------------HHHHHH
Confidence 8888887765566666655432 2 378999999998742 123345
Q ss_pred HHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 347 LNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 347 L~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
+..++.. ....++|++||.++.+++++.+ |+. .++|++|+.++...++..++...+..+
T Consensus 128 ~~~le~~----~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (323)
T 1sxj_B 128 RRTMELY----SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKY 186 (323)
T ss_dssp HHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCB
T ss_pred HHHHhcc----CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5555542 2457788899999999999998 765 799999999999999988765444333
No 52
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.64 E-value=6e-15 Score=150.33 Aligned_cols=160 Identities=18% Similarity=0.284 Sum_probs=119.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF------------ 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~------------ 274 (489)
...|.+|++++|.+...+.+...+.. | ..+..+||+||||||||++++++|+.++.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 46788999999999888877765531 2 23457999999999999999999998854
Q ss_pred ------------cEEEeecCccCChHHHHHHHHHcc------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 275 ------------DVYDLELSSVEGNKDLRQILIATE------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 275 ------------~~~~l~~s~~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
+++.++...-.....++.++.... .+.||+|||+|.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~----------------------- 133 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR----------------------- 133 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------------------
T ss_pred HHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------------------
Confidence 345555543233345666665542 368999999998731
Q ss_pred CchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 337 NRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 337 ~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
...+.|+..++.. ...+++|++||.+..+++++.+ |+ ..++|+.++.++...++..++...+..+
T Consensus 134 ----~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~ 198 (373)
T 1jr3_A 134 ----HSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAH 198 (373)
T ss_dssp ----HHHHHHHHHHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCB
T ss_pred ----HHHHHHHHHHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 2345677777653 3468889999999999999998 76 6799999999999999988876544444
No 53
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.64 E-value=3.3e-15 Score=158.38 Aligned_cols=148 Identities=17% Similarity=0.195 Sum_probs=108.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcE
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDV 276 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~ 276 (489)
...|..|+.++|.++..+.+++.+. ...+.++||+||||||||++|+++|+.+ +.++
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~-------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~ 239 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV 239 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHh-------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeE
Confidence 3467789999999988888776554 2345689999999999999999999997 7889
Q ss_pred EEeecCcc-C--ChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhc
Q 011286 277 YDLELSSV-E--GNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFID 351 (489)
Q Consensus 277 ~~l~~s~~-~--~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 351 (489)
+.++++.- . ....++.++.... .++||||| .. . ...+.|+..|+
T Consensus 240 ~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~-----------------------~---~a~~~L~~~L~ 288 (468)
T 3pxg_A 240 MTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-----------------------I---DASNILKPSLA 288 (468)
T ss_dssp ECC----------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------------------CCCTT
T ss_pred EEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc-----------------------h---hHHHHHHHhhc
Confidence 98888721 1 2345677776553 57899999 10 0 11122333343
Q ss_pred ccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011286 352 GLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 407 (489)
Q Consensus 352 gl~s~~g~~~iiI~TTN~~~-----~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 407 (489)
. +.+.+|++||.++ .+|++|.| ||.. |.|++|+.+++..|++.++..
T Consensus 289 ~------g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 289 R------GELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp S------SSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred C------CCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHH
Confidence 2 3588999999987 69999999 9985 999999999999999988765
No 54
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.64 E-value=1.7e-15 Score=150.79 Aligned_cols=160 Identities=16% Similarity=0.256 Sum_probs=113.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCChHHH
Q 011286 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDL 290 (489)
Q Consensus 214 d~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~~~L 290 (489)
+.++|....++.+...+......- .....+...+||+||||||||++|+++|+.+ +.+++.++++.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 357788888888887776432110 0001123479999999999999999999998 567999999877544333
Q ss_pred HHHH---------------H---HccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc
Q 011286 291 RQIL---------------I---ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG 352 (489)
Q Consensus 291 ~~l~---------------~---~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 352 (489)
..++ . .....+||||||||.+.. ...+.|+..|+.
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~---------------------------~~~~~Ll~~le~ 145 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP---------------------------DVFNILLQMLDD 145 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH---------------------------HHHHHHHHHHHH
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH---------------------------HHHHHHHHHHhc
Confidence 3322 1 112358999999998732 344556666654
Q ss_pred cccCCC-------CceEEEEecCC--------------------------CCCCCccccCCCceeeEEEeCCCCHHHHHH
Q 011286 353 LWSSCG-------DERIIIFTTNH--------------------------KDRLDPALLRPGRMDVHIHMSYCTPCGFKM 399 (489)
Q Consensus 353 l~s~~g-------~~~iiI~TTN~--------------------------~~~LDpALlRpGRfd~~I~~~~p~~~~~~~ 399 (489)
.....+ .+.++|+|||. ...++|+|+. ||+..+.+++|+.+++..
T Consensus 146 ~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~ 223 (311)
T 4fcw_A 146 GRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQ 223 (311)
T ss_dssp SEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHH
T ss_pred CEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHH
Confidence 321111 25789999998 5678999998 999999999999999999
Q ss_pred HHHHhhC
Q 011286 400 LASNYLG 406 (489)
Q Consensus 400 l~~~~l~ 406 (489)
|++.++.
T Consensus 224 i~~~~l~ 230 (311)
T 4fcw_A 224 IVEIQMS 230 (311)
T ss_dssp HHHHHTH
T ss_pred HHHHHHH
Confidence 9998875
No 55
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.62 E-value=9.5e-15 Score=150.13 Aligned_cols=174 Identities=18% Similarity=0.232 Sum_probs=114.4
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHH-----------------HhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYK-----------------RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~-----------------~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~ 277 (489)
.|+|++++|+.|...+...+.+..... .-....+.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 479999999999887754444322110 012234678999999999999999999999999999
Q ss_pred EeecCccCC--------hHHHHHHHHHc------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHH
Q 011286 278 DLELSSVEG--------NKDLRQILIAT------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTL 343 (489)
Q Consensus 278 ~l~~s~~~~--------~~~L~~l~~~~------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 343 (489)
.++++.+.. ...+..++... ..++||||||||.+...+....... ........
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~-------------~~~~~~~~ 168 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITR-------------DVSGEGVQ 168 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---------------------------CHHHH
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceec-------------ccchHHHH
Confidence 999887631 23355555433 2579999999999864221110000 11123467
Q ss_pred HHHHHhhccccc---CC--------------CCceEEEEecCC-------------------------------------
Q 011286 344 SGLLNFIDGLWS---SC--------------GDERIIIFTTNH------------------------------------- 369 (489)
Q Consensus 344 s~LL~~ldgl~s---~~--------------g~~~iiI~TTN~------------------------------------- 369 (489)
+.||..|++... .. ..++++|+|||.
T Consensus 169 ~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~ 248 (376)
T 1um8_A 169 QALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQT 248 (376)
T ss_dssp HHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCH
T ss_pred HHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCH
Confidence 788888886410 00 133577777772
Q ss_pred ----CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHH
Q 011286 370 ----KDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASN 403 (489)
Q Consensus 370 ----~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~ 403 (489)
...+.|+|+. |++..+.|++++.++...++..
T Consensus 249 ~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 249 HDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp HHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred HHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhh
Confidence 1135677777 9999999999999999988874
No 56
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.62 E-value=6e-14 Score=142.16 Aligned_cols=191 Identities=18% Similarity=0.204 Sum_probs=130.2
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCC
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEG 286 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~ 286 (489)
.-.|.+|+.++|.+.+++.+...+..-. ..|. .+..++|+||||||||+|++++|+.++.++...+......
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~~-~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAK-------MRGE-VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHH-------HHTC-CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHH-------hcCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 4568899999998877666544333211 1122 3467999999999999999999999999888777666656
Q ss_pred hHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccc------cC----
Q 011286 287 NKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLW------SS---- 356 (489)
Q Consensus 287 ~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~------s~---- 356 (489)
..++..++.....+.|++|||++.+.... . ..|+..++... ..
T Consensus 90 ~~~l~~~~~~~~~~~v~~iDE~~~l~~~~------------------------~---e~L~~~~~~~~~~i~~~~~~~~~ 142 (334)
T 1in4_A 90 QGDMAAILTSLERGDVLFIDEIHRLNKAV------------------------E---ELLYSAIEDFQIDIMIGKGPSAK 142 (334)
T ss_dssp HHHHHHHHHHCCTTCEEEEETGGGCCHHH------------------------H---HHHHHHHHTSCCCC---------
T ss_pred HHHHHHHHHHccCCCEEEEcchhhcCHHH------------------------H---HHHHHHHHhcccceeeccCcccc
Confidence 66777777666678899999999885310 0 11111111100 00
Q ss_pred ----CCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHh-HHHHHhccCCCHHHHH
Q 011286 357 ----CGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLE-VEELIEKVEVTPADVA 431 (489)
Q Consensus 357 ----~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~~~~~spa~i~ 431 (489)
.-..+.++++||++..|++++.+ ||...+.+++++.+++..+++......+..+.++ +..++....-+|+.+.
T Consensus 143 ~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 143 SIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp ------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHH
T ss_pred cccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHH
Confidence 00235677899999999999999 9999999999999999999988765444444333 3344444455665554
Q ss_pred HHH
Q 011286 432 EQL 434 (489)
Q Consensus 432 ~~l 434 (489)
+.|
T Consensus 221 ~ll 223 (334)
T 1in4_A 221 RLT 223 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 57
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.62 E-value=3.9e-15 Score=149.81 Aligned_cols=186 Identities=16% Similarity=0.249 Sum_probs=116.3
Q ss_pred cCCCCCccccc-CCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 207 LDHPATFDTLA-MDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 207 ~~~p~~fd~l~-~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
+.+..+|++++ |... .. ....+......+ .....+++||||||||||+|++++|+++ +.+++.+++.
T Consensus 4 l~~~~~f~~fv~g~~~-~~-a~~~~~~~~~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGN-RL-AYEVVKEALENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CCTTCCSSSCCCCTTT-HH-HHHHHHHHHHTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCcccCCCCCcH-HH-HHHHHHHHHhCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 44566899997 4322 21 122233332221 1235689999999999999999999999 8999999887
Q ss_pred ccCCh--H-----HHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccccc
Q 011286 283 SVEGN--K-----DLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWS 355 (489)
Q Consensus 283 ~~~~~--~-----~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s 355 (489)
.+... . .+..+.....++.||||||||.+... ...+. .++..++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~----------------------~~~~~---~l~~~l~~~~~ 129 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGK----------------------ERTQI---EFFHIFNTLYL 129 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTC----------------------HHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCC----------------------hHHHH---HHHHHHHHHHH
Confidence 65210 0 01112222345899999999988531 01122 23333333222
Q ss_pred CCCCceEEEEecCCCC---CCCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHH-HHhccCCCHHH
Q 011286 356 SCGDERIIIFTTNHKD---RLDPALLRPGRMD--VHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEE-LIEKVEVTPAD 429 (489)
Q Consensus 356 ~~g~~~iiI~TTN~~~---~LDpALlRpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~-l~~~~~~spa~ 429 (489)
. +.++|++++|.+. .++++|.+ ||+ ..+++++ +.+++..+++.++...+..+.++... ++... -+..+
T Consensus 130 ~--~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 130 L--EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp T--TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHH
T ss_pred C--CCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHH
Confidence 1 2366777777766 68999998 886 7899999 99999999999887555555554433 33333 44444
Q ss_pred HHH
Q 011286 430 VAE 432 (489)
Q Consensus 430 i~~ 432 (489)
+.+
T Consensus 204 l~~ 206 (324)
T 1l8q_A 204 IEG 206 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 58
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.61 E-value=6e-15 Score=148.27 Aligned_cols=181 Identities=11% Similarity=0.141 Sum_probs=120.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEEEeecCccCC----------------------hHHHHH
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVYDLELSSVEG----------------------NKDLRQ 292 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~~l~~s~~~~----------------------~~~L~~ 292 (489)
...+.++|||||||||||++++++++++ ++.++.++|..+.+ ...|.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 3456799999999999999999999999 45678888766422 234666
Q ss_pred HHHHc----cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecC
Q 011286 293 ILIAT----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTN 368 (489)
Q Consensus 293 l~~~~----~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN 368 (489)
+|... ..++||+|||||.+. .+..|..|++.... ....++||+++|
T Consensus 122 ~f~~~~~~~~~~~ii~lDE~d~l~--------------------------~q~~L~~l~~~~~~----~~s~~~vI~i~n 171 (318)
T 3te6_A 122 YITNVPKAKKRKTLILIQNPENLL--------------------------SEKILQYFEKWISS----KNSKLSIICVGG 171 (318)
T ss_dssp HHHHSCGGGSCEEEEEEECCSSSC--------------------------CTHHHHHHHHHHHC----SSCCEEEEEECC
T ss_pred HHHHhhhccCCceEEEEecHHHhh--------------------------cchHHHHHHhcccc----cCCcEEEEEEec
Confidence 67653 347899999999884 12345555554321 234589999999
Q ss_pred CCCC----CCccccCCCcee-eEEEeCCCCHHHHHHHHHHhhCcCCCCCh----------------H-hHHHHHh-----
Q 011286 369 HKDR----LDPALLRPGRMD-VHIHMSYCTPCGFKMLASNYLGITEHPLF----------------L-EVEELIE----- 421 (489)
Q Consensus 369 ~~~~----LDpALlRpGRfd-~~I~~~~p~~~~~~~l~~~~l~~~~~~l~----------------~-~i~~l~~----- 421 (489)
..+. |++++.+ ||. ..|+|++++.++...|+++.+.......+ + ..+..-.
T Consensus 172 ~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (318)
T 3te6_A 172 HNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVI 249 (318)
T ss_dssp SSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEE
T ss_pred Ccccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccc
Confidence 8865 4556666 886 68999999999999999887754221100 0 0000000
Q ss_pred ccCCCHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHhh
Q 011286 422 KVEVTPADVAEQLM----RDEVPKIALSGLIQFLQIKKRE 457 (489)
Q Consensus 422 ~~~~spa~i~~~l~----~~~~~~~al~~l~~~l~~~~~~ 457 (489)
...+++.-|.-... .++|++.||+.+..+.+....+
T Consensus 250 ~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e 289 (318)
T 3te6_A 250 NHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKD 289 (318)
T ss_dssp CEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Confidence 01245544433222 3699999999999888766543
No 59
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.61 E-value=9e-15 Score=165.82 Aligned_cols=158 Identities=16% Similarity=0.200 Sum_probs=107.2
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEE
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 277 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~ 277 (489)
..|.+|+.++|.++..+.+++.+. ...++++||+||||||||++++++|+.+ +.+++
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~-------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 230 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE
Confidence 347899999999988777766543 2345689999999999999999999998 88999
Q ss_pred EeecCccCC--------hHHHHHHHHHcc---CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHH
Q 011286 278 DLELSSVEG--------NKDLRQILIATE---NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGL 346 (489)
Q Consensus 278 ~l~~s~~~~--------~~~L~~l~~~~~---~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 346 (489)
.++++.+.. ...++.++.... .++||||||+|.+.+.....+ .....+.|
T Consensus 231 ~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-------------------~~~~~~~L 291 (854)
T 1qvr_A 231 SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-------------------AVDAGNML 291 (854)
T ss_dssp EECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------------------------
T ss_pred EeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-------------------hHHHHHHH
Confidence 999887631 234677776553 578999999999875322110 01122223
Q ss_pred HHhhcccccCCCCceEEEEecCCCC----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 347 LNFIDGLWSSCGDERIIIFTTNHKD----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 347 L~~ldgl~s~~g~~~iiI~TTN~~~----~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
...++. .++.+|++||.++ .+|++|.| ||+. |.|+.|+.+++..+++.++.
T Consensus 292 ~~~l~~------~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 292 KPALAR------GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp HHHHHT------TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred HHHHhC------CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 333332 3477888888775 48999999 9996 99999999999999986654
No 60
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=2.1e-14 Score=146.86 Aligned_cols=151 Identities=19% Similarity=0.243 Sum_probs=111.7
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-----------CCcEEEeecC
Q 011286 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----------NFDVYDLELS 282 (489)
Q Consensus 214 d~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----------~~~~~~l~~s 282 (489)
++++|.++..+.+.+.+...+.. ..+++++|+||||||||++++++++.+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999999888877655432 335689999999999999999999998 8999999876
Q ss_pred ccC-Ch-----------------------HH-HHHHHHHccC-CeEEEEccchhhhhhhhhHHhhhhcccccccccccCC
Q 011286 283 SVE-GN-----------------------KD-LRQILIATEN-KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQG 336 (489)
Q Consensus 283 ~~~-~~-----------------------~~-L~~l~~~~~~-~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (489)
... +. .. +..++..... +.||||||+|.+...
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~---------------------- 148 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKR---------------------- 148 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHS----------------------
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccC----------------------
Confidence 543 21 12 2222322222 349999999998531
Q ss_pred CchhhH-HHHHHHhhcccccCCCCceEEEEecCCC---CCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 337 NRFQVT-LSGLLNFIDGLWSSCGDERIIIFTTNHK---DRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 337 ~~~~~~-ls~LL~~ldgl~s~~g~~~iiI~TTN~~---~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
. .... +..|+... ..+.+|+|||.+ +.+++++.+ ||+.+|+|++++.++...++..++.
T Consensus 149 ~-~~~~~l~~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 149 R-GGDIVLYQLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp T-TSHHHHHHHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred C-CCceeHHHHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 0 1223 44444433 347889999987 788999988 8877999999999999999998774
No 61
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.61 E-value=5e-15 Score=140.91 Aligned_cols=167 Identities=14% Similarity=0.142 Sum_probs=107.1
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcEEEeecCc
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSS 283 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~~~~l~~s~ 283 (489)
+.++.+|+++++.+ ..+.+++.+..+... +.++++||+||||||||++++++|+.+. .+++.+++..
T Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 21 LPDDETFTSYYPAA-GNDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CCTTCSTTTSCC---CCHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCCCChhhccCCC-CCHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 44457999999832 123344444443321 2467899999999999999999999874 7888888876
Q ss_pred cCChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCce-E
Q 011286 284 VEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDER-I 362 (489)
Q Consensus 284 ~~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~-i 362 (489)
+.. .+...+.....+.||||||+|.+... . .....|+..++..... ... +
T Consensus 91 ~~~--~~~~~~~~~~~~~vliiDe~~~~~~~------------------------~-~~~~~l~~~l~~~~~~--~~~~i 141 (242)
T 3bos_A 91 HAS--ISTALLEGLEQFDLICIDDVDAVAGH------------------------P-LWEEAIFDLYNRVAEQ--KRGSL 141 (242)
T ss_dssp GGG--SCGGGGTTGGGSSEEEEETGGGGTTC------------------------H-HHHHHHHHHHHHHHHH--CSCEE
T ss_pred HHH--HHHHHHHhccCCCEEEEeccccccCC------------------------H-HHHHHHHHHHHHHHHc--CCCeE
Confidence 532 12223334466899999999987420 0 1122344444433221 123 4
Q ss_pred EEEecCCCC---CCCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCcCCCCChH
Q 011286 363 IIFTTNHKD---RLDPALLRPGRMD--VHIHMSYCTPCGFKMLASNYLGITEHPLFL 414 (489)
Q Consensus 363 iI~TTN~~~---~LDpALlRpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~ 414 (489)
|+.+++.++ .+++++.+ |+. .+++++.|+.+++..++..++...+..+.+
T Consensus 142 i~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (242)
T 3bos_A 142 IVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPE 196 (242)
T ss_dssp EEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCH
T ss_pred EEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 444444444 45688888 875 889999999999999999888644444433
No 62
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.61 E-value=2.1e-14 Score=145.09 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=100.3
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-------c-----
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF-------D----- 275 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~-------~----- 275 (489)
.+|.+|++++|.+.+++.+...+. .+...++||+||||||||++|+++|+.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~-------------~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAV-------------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHH-------------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHhh-------------CCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 456789999999887765422211 112346999999999999999999999863 1
Q ss_pred ---------------------EEEeecCccCChHHH------HHHHHHc-----------cCCeEEEEccchhhhhhhhh
Q 011286 276 ---------------------VYDLELSSVEGNKDL------RQILIAT-----------ENKSILVVEDIDCCLEMQDR 317 (489)
Q Consensus 276 ---------------------~~~l~~s~~~~~~~L------~~l~~~~-----------~~~sIL~iDdiD~~~~~~~~ 317 (489)
++.+..+. +...+ ...+... ..++||||||||.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~---- 158 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED---- 158 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH----
T ss_pred cccccchhhhhccccccCCCcccccCCCc--chhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH----
Confidence 22111111 11111 2222221 2378999999998732
Q ss_pred HHhhhhcccccccccccCCCchhhHHHHHHHhhccc---ccCCC------CceEEEEecCCCC-CCCccccCCCceeeEE
Q 011286 318 LAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL---WSSCG------DERIIIFTTNHKD-RLDPALLRPGRMDVHI 387 (489)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl---~s~~g------~~~iiI~TTN~~~-~LDpALlRpGRfd~~I 387 (489)
.....|+..++.- ....| ..+++|+|||..+ .++++|++ ||+.++
T Consensus 159 -----------------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~ 213 (350)
T 1g8p_A 159 -----------------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSV 213 (350)
T ss_dssp -----------------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEE
T ss_pred -----------------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEE
Confidence 2234455555431 11111 2578999999754 89999999 999999
Q ss_pred EeCCC-CHHHHHHHHHHhh
Q 011286 388 HMSYC-TPCGFKMLASNYL 405 (489)
Q Consensus 388 ~~~~p-~~~~~~~l~~~~l 405 (489)
++++| +.+.+..|++..+
T Consensus 214 ~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 214 EVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp ECCCCCSHHHHHHHHHHHH
T ss_pred EcCCCCcHHHHHHHHHHHH
Confidence 99999 5777778887643
No 63
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.61 E-value=7.8e-16 Score=140.48 Aligned_cols=146 Identities=20% Similarity=0.232 Sum_probs=101.8
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEE
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 277 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~ 277 (489)
..|.+|++++|.++..+.+.+.+. ...++++||+||||||||++++++|+.+ +.+++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~-------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILS-------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred HhccccchhhcchHHHHHHHHHHh-------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 347789999999887777766442 1335789999999999999999999997 78888
Q ss_pred EeecCccC----C----hHHHHHHHHHc---cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHH
Q 011286 278 DLELSSVE----G----NKDLRQILIAT---ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGL 346 (489)
Q Consensus 278 ~l~~s~~~----~----~~~L~~l~~~~---~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 346 (489)
.+++..+. . ...+..++... ..+.||||||+|.+...+.. .......+..|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~------------------~~~~~~~~~~l 144 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV------------------AEGALDAGNIL 144 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS------------------CTTSCCTHHHH
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc------------------cccchHHHHHH
Confidence 88776542 1 12344444433 35789999999998532110 00012223334
Q ss_pred HHhhcccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCC
Q 011286 347 LNFIDGLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCT 393 (489)
Q Consensus 347 L~~ldgl~s~~g~~~iiI~TTN~~~-----~LDpALlRpGRfd~~I~~~~p~ 393 (489)
+..++. ..+++|++||.++ .+|++|.+ ||+. |+++.|+
T Consensus 145 ~~~~~~------~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 145 KPMLAR------GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp HHHHHT------TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred HHHHhc------CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 444443 3478899999775 68999999 9995 9999886
No 64
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.59 E-value=2.1e-14 Score=146.12 Aligned_cols=159 Identities=17% Similarity=0.215 Sum_probs=112.8
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc------CCcEEEeecCcc
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------NFDVYDLELSSV 284 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l------~~~~~~l~~s~~ 284 (489)
..++.++|.++..+.+.+.+...+. ...++.++|+||||||||+|++++++.+ +.+++.+++...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 3458899998888877665543221 1335689999999999999999999998 888988886532
Q ss_pred CC----------------------hHH-HHHH---HHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCc
Q 011286 285 EG----------------------NKD-LRQI---LIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNR 338 (489)
Q Consensus 285 ~~----------------------~~~-L~~l---~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (489)
.+ ... +..+ +.....+.||+|||+|.+... .
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~-----------------------~ 144 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKK-----------------------Y 144 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHS-----------------------S
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhcc-----------------------C
Confidence 11 122 2222 222234899999999998631 1
Q ss_pred hhhHHHHHHHhhcccccCCCCceEEEEecCCC---CCCCccccCCCcee-eEEEeCCCCHHHHHHHHHHhhC
Q 011286 339 FQVTLSGLLNFIDGLWSSCGDERIIIFTTNHK---DRLDPALLRPGRMD-VHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 339 ~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~---~~LDpALlRpGRfd-~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
....+..|+..++.. .+..+.+|++||.+ +.+++++.+ |+. ..|+|++++.++...++...+.
T Consensus 145 ~~~~l~~l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 145 NDDILYKLSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp CSTHHHHHHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 134566777777654 23458889999977 578888887 664 4899999999999999988764
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.57 E-value=3e-14 Score=159.48 Aligned_cols=159 Identities=21% Similarity=0.246 Sum_probs=114.0
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEE
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 277 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~ 277 (489)
..|..|+.++|.++..+.+++.+. ...+.++||+||||||||++|+++|+.+ +..++
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 357799999999888887766543 3356789999999999999999999987 67788
Q ss_pred EeecCccC--------ChHHHHHHHHHccC--CeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHH
Q 011286 278 DLELSSVE--------GNKDLRQILIATEN--KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLL 347 (489)
Q Consensus 278 ~l~~s~~~--------~~~~L~~l~~~~~~--~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL 347 (489)
.++++.+. ....++.++..... ++||||||+|.+.+.... ....... .
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~------------------~~~~~~~----~ 304 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA------------------SGGQVDA----A 304 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS------------------SSCHHHH----H
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC------------------CcchHHH----H
Confidence 88776652 13567777776643 799999999998652110 0011112 2
Q ss_pred HhhcccccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 348 NFIDGLWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 348 ~~ldgl~s~~g~~~iiI~TTN~~~-----~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
+.+..+... .++.+|++||.++ .+||+|.| ||+ .|.|+.|+.+++..+++.+..
T Consensus 305 ~~L~~~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 305 NLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp HHHSSCSSS--CCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 222222222 4578888888653 57899999 998 699999999999999887654
No 66
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=2.2e-14 Score=145.48 Aligned_cols=182 Identities=12% Similarity=0.154 Sum_probs=118.7
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-CC-----------
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-NF----------- 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-~~----------- 274 (489)
..+|.+|++++|++++.+.+...+. ..|.. +. +||+||||||||++++++|+.+ +.
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~----------~~~~~-~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSD----------QPRDL-PH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTT----------CTTCC-CC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHh----------hCCCC-Ce-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 5789999999999888776654331 11222 33 9999999999999999999964 21
Q ss_pred -----------------cEEEeecCccCChH--HHHHHHHH----------------ccCCeEEEEccchhhhhhhhhHH
Q 011286 275 -----------------DVYDLELSSVEGNK--DLRQILIA----------------TENKSILVVEDIDCCLEMQDRLA 319 (489)
Q Consensus 275 -----------------~~~~l~~s~~~~~~--~L~~l~~~----------------~~~~sIL~iDdiD~~~~~~~~~~ 319 (489)
+++.++.+...... .+++.+.. ..++.||+|||+|.+-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~------- 147 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT------- 147 (354)
T ss_dssp -----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-------
T ss_pred ecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-------
Confidence 23344433322111 34444433 2256799999999852
Q ss_pred hhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHH
Q 011286 320 KAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKM 399 (489)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~ 399 (489)
....+.|+..++... .+..+|++||.++.+.|++.+ |+ ..++|++|+.+++..
T Consensus 148 --------------------~~~~~~L~~~le~~~----~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~ 200 (354)
T 1sxj_E 148 --------------------KDAQAALRRTMEKYS----KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEIST 200 (354)
T ss_dssp --------------------HHHHHHHHHHHHHST----TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHH
T ss_pred --------------------HHHHHHHHHHHHhhc----CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHH
Confidence 122345666666532 347889999999999999998 87 779999999999999
Q ss_pred HHHHhhCcCCCCCh-H-hHHHHHhccCCCHHHHHHHH
Q 011286 400 LASNYLGITEHPLF-L-EVEELIEKVEVTPADVAEQL 434 (489)
Q Consensus 400 l~~~~l~~~~~~l~-~-~i~~l~~~~~~spa~i~~~l 434 (489)
+++..+...+..+. + .+..++...+-++.++.+.+
T Consensus 201 ~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 201 ILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 99887765444433 3 23344443444444444443
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.56 E-value=1.8e-14 Score=161.39 Aligned_cols=155 Identities=16% Similarity=0.224 Sum_probs=111.9
Q ss_pred ccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCC---CC-ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCC
Q 011286 214 DTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA---WK-RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG 286 (489)
Q Consensus 214 d~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~---~~-rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~ 286 (489)
+.++|++..++.+...+.... .|.. .+ .++||+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRAR--------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHT--------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHH--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 467888888888877776432 1222 12 269999999999999999999998 78999999998742
Q ss_pred h-----HHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccC-----
Q 011286 287 N-----KDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSS----- 356 (489)
Q Consensus 287 ~-----~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~----- 356 (489)
. ..+...+.. ...+||||||||.+- ...++.||+.||.-.-.
T Consensus 563 ~~~~~~~~l~~~~~~-~~~~vl~lDEi~~~~---------------------------~~~~~~Ll~~le~g~~~~~~g~ 614 (758)
T 3pxi_A 563 KHSTSGGQLTEKVRR-KPYSVVLLDAIEKAH---------------------------PDVFNILLQVLEDGRLTDSKGR 614 (758)
T ss_dssp SCCCC---CHHHHHH-CSSSEEEEECGGGSC---------------------------HHHHHHHHHHHHHSBCC-----
T ss_pred ccccccchhhHHHHh-CCCeEEEEeCccccC---------------------------HHHHHHHHHHhccCeEEcCCCC
Confidence 2 233333322 356899999999772 24556677777652111
Q ss_pred --CCCceEEEEecCCCCC------------CCccccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 357 --CGDERIIIFTTNHKDR------------LDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 357 --~g~~~iiI~TTN~~~~------------LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
...+++||+|||.+.. +.|+|+. |||.+|.|++|+.+++..|+..++.
T Consensus 615 ~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 615 TVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHH
T ss_pred EeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHH
Confidence 1134689999997554 7888888 9999999999999999999998775
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.56 E-value=2e-14 Score=160.93 Aligned_cols=154 Identities=16% Similarity=0.270 Sum_probs=113.0
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCC----CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCCh---
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGN--- 287 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~----~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~--- 287 (489)
.++|+++.++.|...+.. .+.|.. +..++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 467777777777665542 223432 22369999999999999999999999999999999876321
Q ss_pred ----------------HHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhc
Q 011286 288 ----------------KDLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFID 351 (489)
Q Consensus 288 ----------------~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 351 (489)
..+...+.. ...+||||||||.+- ...++.|+..||
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~---------------------------~~~~~~Ll~~le 582 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAH---------------------------PDVFNILLQVMD 582 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSC---------------------------HHHHHHHHHHHH
T ss_pred hhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccC---------------------------HHHHHHHHHHhc
Confidence 123333333 347999999999762 235667777777
Q ss_pred cccc--CCC-----CceEEEEecCCCC-------------------------CCCccccCCCceeeEEEeCCCCHHHHHH
Q 011286 352 GLWS--SCG-----DERIIIFTTNHKD-------------------------RLDPALLRPGRMDVHIHMSYCTPCGFKM 399 (489)
Q Consensus 352 gl~s--~~g-----~~~iiI~TTN~~~-------------------------~LDpALlRpGRfd~~I~~~~p~~~~~~~ 399 (489)
.-.- ..| .+++||+|||... .++|+|+. |||.+|.|++++.+++..
T Consensus 583 ~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~ 660 (758)
T 1r6b_X 583 NGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQ 660 (758)
T ss_dssp HSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHH
T ss_pred CcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHH
Confidence 4211 111 3478999999753 67899998 999999999999999999
Q ss_pred HHHHhhC
Q 011286 400 LASNYLG 406 (489)
Q Consensus 400 l~~~~l~ 406 (489)
|+..++.
T Consensus 661 i~~~~l~ 667 (758)
T 1r6b_X 661 VVDKFIV 667 (758)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.56 E-value=7.5e-14 Score=156.31 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=108.2
Q ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCcEE
Q 011286 208 DHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------NFDVY 277 (489)
Q Consensus 208 ~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----------~~~~~ 277 (489)
..|..|+.++|.++..+.+++.+. ...+.++||+||||||||++|+++|+.+ +.+++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~-------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHh-------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 457789999999999888877554 3446789999999999999999999997 88898
Q ss_pred EeecCcc---CChHHHHHHHHHcc--CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc
Q 011286 278 DLELSSV---EGNKDLRQILIATE--NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG 352 (489)
Q Consensus 278 ~l~~s~~---~~~~~L~~l~~~~~--~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 352 (489)
.+++..- .....++.+|.... .++||||| .. . ...+.|+..++.
T Consensus 241 ~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~-----------------------~---~~~~~L~~~l~~ 289 (758)
T 3pxi_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-----------------------I---DASNILKPSLAR 289 (758)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------------------CCCTTS
T ss_pred EecccccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc-----------------------h---hHHHHHHHHHhc
Confidence 8887221 12346777776553 58999999 10 0 111233333332
Q ss_pred cccCCCCceEEEEecCCCC-----CCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCc
Q 011286 353 LWSSCGDERIIIFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGI 407 (489)
Q Consensus 353 l~s~~g~~~iiI~TTN~~~-----~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~ 407 (489)
+++.+|+|||..+ .+||+|.| ||. .|.|+.|+.+++..|++.++..
T Consensus 290 ------~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 290 ------GELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp ------SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred ------CCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 4588999999988 79999999 995 5999999999999999987664
No 70
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=1.2e-13 Score=141.26 Aligned_cols=159 Identities=15% Similarity=0.049 Sum_probs=113.6
Q ss_pred CcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeecCccCCh
Q 011286 212 TFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSSVEGN 287 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~s~~~~~ 287 (489)
.++.++|.++..+.+...+...+... .+..+.++|+||||||||++++++++.+ +..++.+++....+.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~-------~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNP-------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHST-------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCC-------CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 34789999999988888776554321 1112389999999999999999999999 678888887664322
Q ss_pred HH--------------------------HHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhh
Q 011286 288 KD--------------------------LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQV 341 (489)
Q Consensus 288 ~~--------------------------L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (489)
.. +...+.....+.||+|||+|.+- ..
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~---------------------------~~ 140 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA---------------------------PD 140 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC---------------------------HH
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc---------------------------hH
Confidence 11 11222233458899999999871 23
Q ss_pred HHHHHHHhhcccccCCCCceEEEEecCCC---CCCCccccCCCceee-EEEeCCCCHHHHHHHHHHhhC
Q 011286 342 TLSGLLNFIDGLWSSCGDERIIIFTTNHK---DRLDPALLRPGRMDV-HIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 342 ~ls~LL~~ldgl~s~~g~~~iiI~TTN~~---~~LDpALlRpGRfd~-~I~~~~p~~~~~~~l~~~~l~ 406 (489)
.+..|+..++.........+.+|++||.+ +.+++.+.+ |+.. .|+|++++.++...++...+.
T Consensus 141 ~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 141 ILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp HHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 44556666654421001357889999988 778888888 8875 899999999999999988765
No 71
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=1.5e-13 Score=139.19 Aligned_cols=164 Identities=22% Similarity=0.300 Sum_probs=117.5
Q ss_pred CCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----C
Q 011286 200 EIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN-----F 274 (489)
Q Consensus 200 ~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~-----~ 274 (489)
..|.. ...|.+|++++|++.+++.+...+. . |.. + ++|||||||||||++++++|+.+. .
T Consensus 13 ~~~~~--k~rp~~~~~~~g~~~~~~~L~~~i~----~-------g~~-~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~ 77 (340)
T 1sxj_C 13 LPWVE--KYRPETLDEVYGQNEVITTVRKFVD----E-------GKL-P-HLLFYGPPGTGKTSTIVALAREIYGKNYSN 77 (340)
T ss_dssp CCHHH--HTCCSSGGGCCSCHHHHHHHHHHHH----T-------TCC-C-CEEEECSSSSSHHHHHHHHHHHHHTTSHHH
T ss_pred CchHH--HhCCCcHHHhcCcHHHHHHHHHHHh----c-------CCC-c-eEEEECCCCCCHHHHHHHHHHHHcCCCccc
Confidence 35765 5789999999999887776655443 1 222 2 399999999999999999999973 3
Q ss_pred cEEEeecCccCChHHHHHHHHHc--------cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHH
Q 011286 275 DVYDLELSSVEGNKDLRQILIAT--------ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGL 346 (489)
Q Consensus 275 ~~~~l~~s~~~~~~~L~~l~~~~--------~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 346 (489)
.+..++.++..+...++..+... ..+.|++|||+|.+.. ...+.|
T Consensus 78 ~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~---------------------------~~~~~L 130 (340)
T 1sxj_C 78 MVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN---------------------------AAQNAL 130 (340)
T ss_dssp HEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH---------------------------HHHHHH
T ss_pred eEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH---------------------------HHHHHH
Confidence 46777777654555555544321 2368999999998732 123456
Q ss_pred HHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCC
Q 011286 347 LNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPL 412 (489)
Q Consensus 347 L~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l 412 (489)
+..++... ....+|++||.+..+.|++.+ |+. .+.|+.++.++....+...+...+..+
T Consensus 131 ~~~le~~~----~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i 189 (340)
T 1sxj_C 131 RRVIERYT----KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKL 189 (340)
T ss_dssp HHHHHHTT----TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCB
T ss_pred HHHHhcCC----CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCC
Confidence 66666532 346778889999999999998 875 689999999998888877764443333
No 72
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.54 E-value=2.7e-14 Score=150.24 Aligned_cols=187 Identities=19% Similarity=0.278 Sum_probs=116.9
Q ss_pred cCCCCCccccc-CCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEee
Q 011286 207 LDHPATFDTLA-MDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLE 280 (489)
Q Consensus 207 ~~~p~~fd~l~-~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~~~~l~ 280 (489)
+.+..+|++++ |..... ....+..+...+ |. ..+++||||||||||+|++++|+++ +.+++.++
T Consensus 98 l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 44445899988 533321 223333232221 22 5689999999999999999999998 88899888
Q ss_pred cCccCChHHHH---------HHHHHcc-CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhh
Q 011286 281 LSSVEGNKDLR---------QILIATE-NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFI 350 (489)
Q Consensus 281 ~s~~~~~~~L~---------~l~~~~~-~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~l 350 (489)
+..+. ..+. .+..... ++.||||||+|.+.+. ...+ ..|+..+
T Consensus 168 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~----------------------~~~q---~~l~~~l 220 (440)
T 2z4s_A 168 SEKFL--NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK----------------------TGVQ---TELFHTF 220 (440)
T ss_dssp HHHHH--HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC----------------------HHHH---HHHHHHH
T ss_pred HHHHH--HHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC----------------------hHHH---HHHHHHH
Confidence 77652 1121 2222234 6899999999988531 0112 2333333
Q ss_pred cccccCCCCceEEEEecCCCCC---CCccccCCCcee--eEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHH-HHhccC
Q 011286 351 DGLWSSCGDERIIIFTTNHKDR---LDPALLRPGRMD--VHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEE-LIEKVE 424 (489)
Q Consensus 351 dgl~s~~g~~~iiI~TTN~~~~---LDpALlRpGRfd--~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~-l~~~~~ 424 (489)
+.+... +..+||.|.+.+.. ++++|++ ||+ ..+.++.|+.+++..+++..+...+..+.+++.. ++....
T Consensus 221 ~~l~~~--~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~ 296 (440)
T 2z4s_A 221 NELHDS--GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVD 296 (440)
T ss_dssp HHHHTT--TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCC
T ss_pred HHHHHC--CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Confidence 333221 23455555555554 8899998 886 7899999999999999998886555445444333 333344
Q ss_pred CCHHHHHHHH
Q 011286 425 VTPADVAEQL 434 (489)
Q Consensus 425 ~spa~i~~~l 434 (489)
-+++++.+.|
T Consensus 297 gn~R~l~~~L 306 (440)
T 2z4s_A 297 DNLRRLRGAI 306 (440)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 5555554443
No 73
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.50 E-value=1e-13 Score=135.24 Aligned_cols=155 Identities=12% Similarity=0.148 Sum_probs=100.6
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcEEEeecCccCCh
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSSVEGN 287 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~~~~l~~s~~~~~ 287 (489)
.+|++++|.....+.+++.+.... ..+.++||+||||||||++|+++++.+. .+++.++++.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~- 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE- 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-
Confidence 379999999888888887776443 2346899999999999999999999985 6899999998742
Q ss_pred HHHHH-HHH-----------------HccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHh
Q 011286 288 KDLRQ-ILI-----------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNF 349 (489)
Q Consensus 288 ~~L~~-l~~-----------------~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ 349 (489)
..+.. +|. ....+++|||||||.+.. .....|+..
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~---------------------------~~q~~Ll~~ 123 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM---------------------------MVQEKLLRV 123 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH---------------------------HHHHHHHHH
T ss_pred hHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH---------------------------HHHHHHHHH
Confidence 22222 221 112468999999998742 122344555
Q ss_pred hcccc-cC------CCCceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHhhC
Q 011286 350 IDGLW-SS------CGDERIIIFTTNHK-------DRLDPALLRPGRMD-VHIHMSYCTP--CGFKMLASNYLG 406 (489)
Q Consensus 350 ldgl~-s~------~g~~~iiI~TTN~~-------~~LDpALlRpGRfd-~~I~~~~p~~--~~~~~l~~~~l~ 406 (489)
++... .. ....+.||+|||.. ..++++|.. ||+ ..|.+|.... +....++..++.
T Consensus 124 l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~ 195 (265)
T 2bjv_A 124 IEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAI 195 (265)
T ss_dssp HHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred HHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHH
Confidence 54310 00 01246789999974 357889988 885 5677777765 566677766654
No 74
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.47 E-value=1.8e-12 Score=131.25 Aligned_cols=126 Identities=20% Similarity=0.214 Sum_probs=97.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC------------------------CcEEEeecC---ccCChHHHHHHHHHcc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN------------------------FDVYDLELS---SVEGNKDLRQILIATE 298 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~------------------------~~~~~l~~s---~~~~~~~L~~l~~~~~ 298 (489)
..+.+||||||||||||++|+++|+.+. .+++.++.. .-.+.+.++.++....
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLN 101 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTT
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHh
Confidence 3456899999999999999999999874 346666654 2234566777766542
Q ss_pred ------CCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCC
Q 011286 299 ------NKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDR 372 (489)
Q Consensus 299 ------~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~ 372 (489)
...|++|||+|.+.. ...+.||..++.- +...++|++||.++.
T Consensus 102 ~~~~~~~~kvviIdead~l~~---------------------------~a~naLLk~lEep----~~~~~~Il~t~~~~~ 150 (334)
T 1a5t_A 102 EHARLGGAKVVWVTDAALLTD---------------------------AAANALLKTLEEP----PAETWFFLATREPER 150 (334)
T ss_dssp SCCTTSSCEEEEESCGGGBCH---------------------------HHHHHHHHHHTSC----CTTEEEEEEESCGGG
T ss_pred hccccCCcEEEEECchhhcCH---------------------------HHHHHHHHHhcCC----CCCeEEEEEeCChHh
Confidence 368999999998732 2346788888763 356888999999999
Q ss_pred CCccccCCCceeeEEEeCCCCHHHHHHHHHHhh
Q 011286 373 LDPALLRPGRMDVHIHMSYCTPCGFKMLASNYL 405 (489)
Q Consensus 373 LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l 405 (489)
+.|++.+ |+. .++|+.|+.++...++....
T Consensus 151 l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 151 LLATLRS--RCR-LHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp SCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC
T ss_pred CcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc
Confidence 9999998 774 69999999999988887765
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.41 E-value=2.6e-13 Score=120.76 Aligned_cols=132 Identities=12% Similarity=0.086 Sum_probs=88.4
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCChHHHH
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLR 291 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~~~L~ 291 (489)
.++|.....+.+++.+.... .....+||+||||||||++|+++++.. +.+++ ++++.+.....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 45677777777777665432 234679999999999999999999987 77899 9999886655555
Q ss_pred HHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCC-
Q 011286 292 QILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHK- 370 (489)
Q Consensus 292 ~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~- 370 (489)
..+... .+++|||||||.+.. .....|+..|... ...+.+|+|||.+
T Consensus 70 ~~~~~a-~~g~l~ldei~~l~~---------------------------~~q~~Ll~~l~~~----~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHLTR---------------------------EQQYHLVQLQSQE----HRPFRLIGIGDTSL 117 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGSCH---------------------------HHHHHHHHHHHSS----SCSSCEEEEESSCH
T ss_pred cHHHHc-CCcEEEEcChHHCCH---------------------------HHHHHHHHHHhhc----CCCEEEEEECCcCH
Confidence 555554 457999999998832 1223455655433 2335678888864
Q ss_pred ------CCCCccccCCCcee-eEEEeCCC
Q 011286 371 ------DRLDPALLRPGRMD-VHIHMSYC 392 (489)
Q Consensus 371 ------~~LDpALlRpGRfd-~~I~~~~p 392 (489)
..+++.|.. |+. ..|++|+.
T Consensus 118 ~~~~~~~~~~~~L~~--rl~~~~i~lPpL 144 (145)
T 3n70_A 118 VELAASNHIIAELYY--CFAMTQIACLPL 144 (145)
T ss_dssp HHHHHHSCCCHHHHH--HHHHHEEECCCC
T ss_pred HHHHHcCCCCHHHHH--HhcCCEEeCCCC
Confidence 245555554 432 34666653
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.39 E-value=1.4e-12 Score=147.78 Aligned_cols=156 Identities=19% Similarity=0.303 Sum_probs=112.6
Q ss_pred cccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCC----CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC
Q 011286 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE 285 (489)
Q Consensus 213 fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~----~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~ 285 (489)
++.++|..+..+.+...+.... .|.. +...+||+||||||||++|+++|+.+ +.+++.++++.+.
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~--------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRAR--------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHG--------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred hcccCCcHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 3567888888887777665332 1211 22479999999999999999999999 7899999998764
Q ss_pred ChH-------------------HHHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHH
Q 011286 286 GNK-------------------DLRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGL 346 (489)
Q Consensus 286 ~~~-------------------~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 346 (489)
... .+...+.. ...+||||||||.+- ..+++.|
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l~---------------------------~~~~~~L 680 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKAH---------------------------PDVFNIL 680 (854)
T ss_dssp SSGGGGGC--------------CHHHHHHH-CSSEEEEESSGGGSC---------------------------HHHHHHH
T ss_pred chhHHHHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEecccccC---------------------------HHHHHHH
Confidence 321 12222222 346899999999762 2456777
Q ss_pred HHhhcccccC--CC-----CceEEEEecCC--------------------------CCCCCccccCCCceeeEEEeCCCC
Q 011286 347 LNFIDGLWSS--CG-----DERIIIFTTNH--------------------------KDRLDPALLRPGRMDVHIHMSYCT 393 (489)
Q Consensus 347 L~~ldgl~s~--~g-----~~~iiI~TTN~--------------------------~~~LDpALlRpGRfd~~I~~~~p~ 393 (489)
|..||.-.-. .| .+.+||+|||. ...+.|+|+. |+|..+.|++++
T Consensus 681 l~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~ 758 (854)
T 1qvr_A 681 LQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLT 758 (854)
T ss_dssp HHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCC
T ss_pred HHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCC
Confidence 8888743211 11 25789999997 2356788887 999999999999
Q ss_pred HHHHHHHHHHhhC
Q 011286 394 PCGFKMLASNYLG 406 (489)
Q Consensus 394 ~~~~~~l~~~~l~ 406 (489)
.+++..|+..++.
T Consensus 759 ~edi~~i~~~~l~ 771 (854)
T 1qvr_A 759 KEQIRQIVEIQLS 771 (854)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988875
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=7.1e-14 Score=152.20 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=87.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeec----CccCC---hHHH------HHHHHHccCCeEEEEccchhhhhhhh
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL----SSVEG---NKDL------RQILIATENKSILVVEDIDCCLEMQD 316 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~----s~~~~---~~~L------~~l~~~~~~~sIL~iDdiD~~~~~~~ 316 (489)
++||+||||||||+||+++|+.++..++.... ..+.. .... ..-......++||||||||.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~--- 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRD--- 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCS---
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCH---
Confidence 79999999999999999999999877665321 22210 0000 00001112468999999998731
Q ss_pred hHHhhhhcccccccccccCCCchhhHHHHHHHhhccc---------ccCCCCceEEEEecCCCC-------------CCC
Q 011286 317 RLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL---------WSSCGDERIIIFTTNHKD-------------RLD 374 (489)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl---------~s~~g~~~iiI~TTN~~~-------------~LD 374 (489)
...+.|+..|+.- .......+.||+|||.++ .|+
T Consensus 406 ------------------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~ 461 (595)
T 3f9v_A 406 ------------------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLP 461 (595)
T ss_dssp ------------------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSC
T ss_pred ------------------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCC
Confidence 2335566666532 111123578999999886 899
Q ss_pred ccccCCCceee-EEEeCCCCHHHHHHHHHHhhCcC
Q 011286 375 PALLRPGRMDV-HIHMSYCTPCGFKMLASNYLGIT 408 (489)
Q Consensus 375 pALlRpGRfd~-~I~~~~p~~~~~~~l~~~~l~~~ 408 (489)
+||++ |||. .+..++|+.+ ...|+++.+...
T Consensus 462 ~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 462 PTILS--RFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp SSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred HHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 99999 9984 5666778878 888888877653
No 78
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=3.8e-12 Score=127.40 Aligned_cols=122 Identities=16% Similarity=0.241 Sum_probs=96.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc------CCcEEEeecCc-cCChHHHHHHHHHcc------CCeEEEEccchhhhhh
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL------NFDVYDLELSS-VEGNKDLRQILIATE------NKSILVVEDIDCCLEM 314 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l------~~~~~~l~~s~-~~~~~~L~~l~~~~~------~~sIL~iDdiD~~~~~ 314 (489)
...||||||||||||++++++|+.+ ..+++.++.+. -.+.+.++.++.... ...|++|||+|.+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~- 96 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ- 96 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-
Confidence 4589999999999999999999874 45888888764 345566777765542 257999999998832
Q ss_pred hhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCCCCH
Q 011286 315 QDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSYCTP 394 (489)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~p~~ 394 (489)
...+.||..|+.. +...++|++||.++++.|++.+ | .++|++++.
T Consensus 97 --------------------------~a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~ 141 (305)
T 2gno_A 97 --------------------------QAANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVP 141 (305)
T ss_dssp --------------------------HHHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCC
T ss_pred --------------------------HHHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCH
Confidence 2346788888863 3567888888999999999999 7 799999999
Q ss_pred HHHHHHHHHhh
Q 011286 395 CGFKMLASNYL 405 (489)
Q Consensus 395 ~~~~~l~~~~l 405 (489)
++....+...+
T Consensus 142 ~~i~~~L~~~~ 152 (305)
T 2gno_A 142 KEFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99888887765
No 79
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.37 E-value=4.9e-12 Score=134.67 Aligned_cols=146 Identities=15% Similarity=0.136 Sum_probs=92.9
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC--cEEEeecCccCChHHH--
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELSSVEGNKDL-- 290 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~--~~~~l~~s~~~~~~~L-- 290 (489)
.++|.+++++.+...+. .+.++||+||||||||++|+++|+.++. ++..+.+.- .+.+++
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcC
Confidence 46677777766644332 1358999999999999999999999854 444444331 111111
Q ss_pred ---------HHHHHHc-----cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc----
Q 011286 291 ---------RQILIAT-----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG---- 352 (489)
Q Consensus 291 ---------~~l~~~~-----~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---- 352 (489)
...+... +.++|||||||+.+. ..+.+.|+..|+.
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~---------------------------~~~q~~LL~~lee~~v~ 139 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG---------------------------PAILNTLLTAINERQFR 139 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGCC---------------------------HHHHHHHHHHHHSSEEE
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc---------------------------HHHHHHHHHHHHHHhcc
Confidence 1112111 135799999998652 2344567776652
Q ss_pred ---cccCCCCceEEEEecCCCCC---CCccccCCCceeeEEEeCCCCH-HHHHHHHHHhhC
Q 011286 353 ---LWSSCGDERIIIFTTNHKDR---LDPALLRPGRMDVHIHMSYCTP-CGFKMLASNYLG 406 (489)
Q Consensus 353 ---l~s~~g~~~iiI~TTN~~~~---LDpALlRpGRfd~~I~~~~p~~-~~~~~l~~~~l~ 406 (489)
..... ..+++|+|||.... +.+++++ ||..+|++|+|+. +++..|++....
T Consensus 140 i~G~~~~~-~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 140 NGAHVEKI-PMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp CSSSEEEC-CCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred CCCCcCCc-chhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 21111 23467888885322 3459999 9999999999997 678888877653
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.36 E-value=3.5e-13 Score=119.67 Aligned_cols=83 Identities=11% Similarity=-0.021 Sum_probs=62.0
Q ss_pred ccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHH
Q 011286 216 LAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILI 295 (489)
Q Consensus 216 l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~ 295 (489)
++|.....+.+.+.+..+. ..+.++||+||||||||++|+++++..+ +++.++++.+... .+..++.
T Consensus 6 ~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~~~~~~~ 72 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-MPMELLQ 72 (143)
T ss_dssp --CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-CHHHHHH
T ss_pred ceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-hhhhHHH
Confidence 5677777778877776543 2246799999999999999999999988 9999998876321 1344444
Q ss_pred HccCCeEEEEccchhhh
Q 011286 296 ATENKSILVVEDIDCCL 312 (489)
Q Consensus 296 ~~~~~sIL~iDdiD~~~ 312 (489)
. ..+++|||||||.+.
T Consensus 73 ~-a~~~~l~lDei~~l~ 88 (143)
T 3co5_A 73 K-AEGGVLYVGDIAQYS 88 (143)
T ss_dssp H-TTTSEEEEEECTTCC
T ss_pred h-CCCCeEEEeChHHCC
Confidence 4 346899999999883
No 81
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.32 E-value=4.6e-12 Score=126.68 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=100.2
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCChHHHH
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLR 291 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~~~L~ 291 (489)
+++|.....+.+++.+.... ..+.++||+||||||||++|+++++.. +.+++.++|+.+...---.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 46777777777777665432 335689999999999999999999976 6789999998874221111
Q ss_pred HHHH-----------------HccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccc
Q 011286 292 QILI-----------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLW 354 (489)
Q Consensus 292 ~l~~-----------------~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~ 354 (489)
.+|. ....+++|||||||.+.. .....|+..++...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~---------------------------~~q~~Ll~~l~~~~ 124 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP---------------------------LMQVRLLRAIQERE 124 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH---------------------------HHHHHHHHHHHSSB
T ss_pred HhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH---------------------------HHHHHHHHHHhcCE
Confidence 2221 112357999999998842 12234555555421
Q ss_pred -c------CCCCceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCC--HHHHHHHHHHhhC
Q 011286 355 -S------SCGDERIIIFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCT--PCGFKMLASNYLG 406 (489)
Q Consensus 355 -s------~~g~~~iiI~TTN~~-------~~LDpALlRpGRf-d~~I~~~~p~--~~~~~~l~~~~l~ 406 (489)
. .....+.||+|||.. ..++++|.. || ...|++|+.. .+....|+..|+.
T Consensus 125 ~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 125 VQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp CCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred eeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 0 011246789999975 346777777 77 4557777776 4566667776654
No 82
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.32 E-value=1.4e-12 Score=119.61 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=66.8
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeecCcc
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSSV 284 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~s~~ 284 (489)
.+.+|++++......+.+++.+..++.. .....+.+++|+||||||||+|++++|+.+ |..++.+++.++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 5678999988655555666666655532 334456789999999999999999999987 666666665543
Q ss_pred CChHHHH---------HHHHHccCCeEEEEccchhh
Q 011286 285 EGNKDLR---------QILIATENKSILVVEDIDCC 311 (489)
Q Consensus 285 ~~~~~L~---------~l~~~~~~~sIL~iDdiD~~ 311 (489)
. ..+. .++....++.+|+|||++..
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 79 I--FRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp H--HHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred H--HHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 1 1111 33344557899999999854
No 83
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.27 E-value=1.1e-11 Score=152.45 Aligned_cols=137 Identities=20% Similarity=0.349 Sum_probs=99.7
Q ss_pred CceEEEECCCCCcHHHHH-HHHHHHcCCcEEEeecCccCChHHHHHHHHHc-----------------cCCeEEEEccch
Q 011286 248 KRGYLLYGPPGTGKSSLI-AAMANYLNFDVYDLELSSVEGNKDLRQILIAT-----------------ENKSILVVEDID 309 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla-~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~-----------------~~~sIL~iDdiD 309 (489)
++++||+||||||||++| +++++..++.++.++++...+...+++.+... ..++||||||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 479999999999999999 56666668899999999988778887777542 124799999999
Q ss_pred hhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCC------CceEEEEecCCCC-----CCCcccc
Q 011286 310 CCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCG------DERIIIFTTNHKD-----RLDPALL 378 (489)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g------~~~iiI~TTN~~~-----~LDpALl 378 (489)
.... ++.+ .......+.+++ ...|++.... .++.+|+|||++. .|+|+|+
T Consensus 1347 mp~~--d~yg----------------~q~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1347 LPKL--DKYG----------------SQNVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp CSCC--CSSS----------------CCHHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred cccc--cccC----------------chhHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Confidence 6421 1100 112233444444 2234443221 2478999999995 8999999
Q ss_pred CCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 379 RPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 379 RpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
| || ..|.++.|+.+++..|+..++.
T Consensus 1408 R--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1408 R--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp T--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred h--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 9 99 6799999999999999988764
No 84
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.23 E-value=6.5e-11 Score=121.88 Aligned_cols=163 Identities=12% Similarity=0.129 Sum_probs=105.8
Q ss_pred CcccccCCHHHHHHHHHHH-HHHHhcHHHHHHhCC-CCCceEEE--ECCCCCcHHHHHHHHHHHc---------CCcEEE
Q 011286 212 TFDTLAMDFDMKKMIMDDL-ERFLKRKEFYKRVGK-AWKRGYLL--YGPPGTGKSSLIAAMANYL---------NFDVYD 278 (489)
Q Consensus 212 ~fd~l~~~~~~K~~i~~~l-~~~l~~~~~y~~~g~-~~~rg~LL--~GPpGtGKTsla~aiA~~l---------~~~~~~ 278 (489)
..+.++|.++..+.+.+.+ ..... |. ..++.++| +||||||||+|++++++.+ +..++.
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 3467888888888777766 43321 10 23567999 9999999999999999887 556777
Q ss_pred eecCccCCh----------------------HH----HHHHHHHccCCeEEEEccchhhhhhhhhHHhhhhccccccccc
Q 011286 279 LELSSVEGN----------------------KD----LRQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSA 332 (489)
Q Consensus 279 l~~s~~~~~----------------------~~----L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~ 332 (489)
+++....+. .. +...+.....+.||+|||+|.+....
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~----------------- 154 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP----------------- 154 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCT-----------------
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhcc-----------------
Confidence 776432111 11 22222223458899999999884210
Q ss_pred ccCCCchhhHHHHHHHhhcccccCCC--CceEEEEecCCCC---CCC---ccccCCCceeeEEEeCCCCHHHHHHHHHHh
Q 011286 333 CNQGNRFQVTLSGLLNFIDGLWSSCG--DERIIIFTTNHKD---RLD---PALLRPGRMDVHIHMSYCTPCGFKMLASNY 404 (489)
Q Consensus 333 ~~~~~~~~~~ls~LL~~ldgl~s~~g--~~~iiI~TTN~~~---~LD---pALlRpGRfd~~I~~~~p~~~~~~~l~~~~ 404 (489)
......+..|+..++.... .+ ..+.+|+|||.++ .++ +.+.+ |+...+++++++.++..+++...
T Consensus 155 ----~~~~~~l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~ 227 (412)
T 1w5s_A 155 ----RIAAEDLYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQR 227 (412)
T ss_dssp ----TSCHHHHHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHH
T ss_pred ----CcchHHHHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHH
Confidence 0123445555555554310 12 4578888888665 344 66666 55556999999999999999776
Q ss_pred hC
Q 011286 405 LG 406 (489)
Q Consensus 405 l~ 406 (489)
+.
T Consensus 228 ~~ 229 (412)
T 1w5s_A 228 AE 229 (412)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.18 E-value=3.6e-11 Score=112.12 Aligned_cols=97 Identities=22% Similarity=0.289 Sum_probs=65.0
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCC-CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV 284 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~-~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~ 284 (489)
.+.+|+++++.....+.+++.+..++... +.. .+++++|+||||||||+|++++|+++ +.+++.+++..+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY------EPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC------CSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh------hhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 35689999987655555666666555421 111 12799999999999999999999988 677877776543
Q ss_pred CC-------hHHHHHHHHHccCCeEEEEccchhh
Q 011286 285 EG-------NKDLRQILIATENKSILVVEDIDCC 311 (489)
Q Consensus 285 ~~-------~~~L~~l~~~~~~~sIL~iDdiD~~ 311 (489)
.. ...+..++.......+|+|||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 10 0112233333445679999999765
No 86
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.16 E-value=2.6e-11 Score=124.65 Aligned_cols=121 Identities=20% Similarity=0.251 Sum_probs=88.0
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHHHccCCeEEEEccchhhhhhhhhHHhhh
Q 011286 243 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCCLEMQDRLAKAK 322 (489)
Q Consensus 243 ~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~ 322 (489)
.+++.++.++|+||||+|||||++++|+.++..++.++... ......+....+..++++||++.......+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~--- 236 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGESRDLP--- 236 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTTTTTCC---
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHHHhhcc---
Confidence 47888899999999999999999999999988776543322 12222344556778899999998754110000
Q ss_pred hcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCC
Q 011286 323 AAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSY 391 (489)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~ 391 (489)
......+...+.+.+||. +.|+++|||++.+ +++++|||++..+...+
T Consensus 237 -------------~~~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 237 -------------SGQGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp -------------CCSHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred -------------ccCcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 011112457788888884 4578899999999 89999999999888766
No 87
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.04 E-value=2.1e-10 Score=114.89 Aligned_cols=96 Identities=25% Similarity=0.382 Sum_probs=62.1
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC----CcEEEeecCccC
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLELSSVE 285 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~----~~~~~l~~s~~~ 285 (489)
+.+|+++......+..+++.+..|+.. .+..++.+++||||||||||+|+.++|+++. .+++.+++..+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~------~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQ------YPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHH------CSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHh------ccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 478999987654445555555555432 2222368999999999999999999998765 777777655330
Q ss_pred -------ChHHHHHHHHHccCCeEEEEccchhh
Q 011286 286 -------GNKDLRQILIATENKSILVVEDIDCC 311 (489)
Q Consensus 286 -------~~~~L~~l~~~~~~~sIL~iDdiD~~ 311 (489)
....+..++....+..+|+||||+..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 11112222333345679999999754
No 88
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.03 E-value=4.9e-10 Score=105.00 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=43.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHHHccCCeEEEEccchhh
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCC 311 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~~ 311 (489)
|.|.++++|||||||||||++|.++|+.++-.++.+.-+.. .. .+.......||+|||+|..
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s--~f----~l~~l~~~kIiiLDEad~~ 115 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS--HF----WLEPLTDTKVAMLDDATTT 115 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS--CG----GGGGGTTCSSEEEEEECHH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc--hh----hhcccCCCCEEEEECCCch
Confidence 47777899999999999999999999999765543321111 10 1122334569999999953
No 89
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.01 E-value=1.9e-09 Score=117.57 Aligned_cols=53 Identities=34% Similarity=0.301 Sum_probs=42.5
Q ss_pred cCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 207 LDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 207 ~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
..+|..|+.++|+..+++.+...+. ....++|+||||||||+|+++||+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 3567899999999888766644332 1358999999999999999999998853
No 90
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.95 E-value=6.2e-10 Score=132.05 Aligned_cols=147 Identities=12% Similarity=0.128 Sum_probs=91.9
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhc----------HHHHHH------hC------------CCCCceEEEECCCCCcHH
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKR----------KEFYKR------VG------------KAWKRGYLLYGPPGTGKS 262 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~----------~~~y~~------~g------------~~~~rg~LL~GPpGtGKT 262 (489)
.+|+++.+..+.|+.+++.+..++.. ++.|+. .| .|..+.+|+|||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 58999999999999999999999854 334544 22 333444999999999999
Q ss_pred HHHHHHHHHcC---CcEEEeecCc----------------c--C----ChHHHHHHHHH--ccCCeEEEEccchhhhhhh
Q 011286 263 SLIAAMANYLN---FDVYDLELSS----------------V--E----GNKDLRQILIA--TENKSILVVEDIDCCLEMQ 315 (489)
Q Consensus 263 sla~aiA~~l~---~~~~~l~~s~----------------~--~----~~~~L~~l~~~--~~~~sIL~iDdiD~~~~~~ 315 (489)
+||+++|.+.. -+...++... + + ++..|+.++.. ...+++||+|++|++++.+
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 99999998773 3444443332 1 1 24456555542 3569999999999998743
Q ss_pred hhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCC
Q 011286 316 DRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHK 370 (489)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~ 370 (489)
...+.... .+.....+.++++|..||++... .+++|| +||+.
T Consensus 1177 ~~~g~~~~----------~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEGEIGD----------SHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQI 1218 (1706)
T ss_dssp HHHSCTTC----------CCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEECE
T ss_pred cccccccc----------ccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eeccc
Confidence 31111000 00123445799999999997654 235555 77764
No 91
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.91 E-value=3.1e-08 Score=99.17 Aligned_cols=176 Identities=16% Similarity=0.120 Sum_probs=103.9
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc-----C
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV-----E 285 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~-----~ 285 (489)
..-+.++|-++..+.+.+ +. . +.++++||+|+|||+|++.+++.++.+++.+++... .
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~----~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR----A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC----S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCHHHhcChHHHHHHHHH-hc----C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 355667887766665544 32 1 489999999999999999999998877777776532 0
Q ss_pred C-----------------------------------------------hHHHHHH---HHHcc-CCeEEEEccchhhhhh
Q 011286 286 G-----------------------------------------------NKDLRQI---LIATE-NKSILVVEDIDCCLEM 314 (489)
Q Consensus 286 ~-----------------------------------------------~~~L~~l---~~~~~-~~sIL~iDdiD~~~~~ 314 (489)
+ ...+..+ +.... .+.+|+|||++.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 0 0112222 22222 3889999999987420
Q ss_pred hhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCC---------CccccCCCceee
Q 011286 315 QDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRL---------DPALLRPGRMDV 385 (489)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~L---------DpALlRpGRfd~ 385 (489)
. .......+..+. +.. .++.+|+|++....+ ...+ .||+..
T Consensus 153 ~--------------------~~~~~~~l~~~~---~~~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~ 202 (357)
T 2fna_A 153 R--------------------GVNLLPALAYAY---DNL-----KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFS 202 (357)
T ss_dssp T--------------------TCCCHHHHHHHH---HHC-----TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCE
T ss_pred C--------------------chhHHHHHHHHH---HcC-----CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccc
Confidence 0 011112222232 221 235566666543211 1122 357777
Q ss_pred EEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhccCCCHHHHHHHH
Q 011286 386 HIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEVTPADVAEQL 434 (489)
Q Consensus 386 ~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~~l 434 (489)
.+++++.+.++..+++...+...+....+ ...+....+-.|.-+...+
T Consensus 203 ~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-~~~i~~~t~G~P~~l~~~~ 250 (357)
T 2fna_A 203 TVELKPFSREEAIEFLRRGFQEADIDFKD-YEVVYEKIGGIPGWLTYFG 250 (357)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHTCCCCC-HHHHHHHHCSCHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHhCCCHHHHHHHH
Confidence 89999999999999988766422222211 2555555666676665443
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.86 E-value=3.7e-09 Score=94.42 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=47.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCChHHHHHHHHHccCCeEEEEccchhh
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCC 311 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~~ 311 (489)
....++|+||+|+|||+|++++++.+ |..++.++...+... .-..++.||+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCcccc
Confidence 45689999999999999999999988 777888887776543 11346889999999975
No 93
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.84 E-value=1.8e-09 Score=107.96 Aligned_cols=116 Identities=15% Similarity=0.144 Sum_probs=67.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcCCc--EEEeecCc----cC--ChHHHHHHHHHccCCeEEEEccchhhhhhh
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD--VYDLELSS----VE--GNKDLRQILIATENKSILVVEDIDCCLEMQ 315 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~--~~~l~~s~----~~--~~~~L~~l~~~~~~~sIL~iDdiD~~~~~~ 315 (489)
|.+.++.++|+||||||||+|+.++|...+.. ++.+...+ .. ....+..+.....+..+||||+|+.+....
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAA 198 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC---
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccccc
Confidence 45556678999999999999999999876555 44441111 11 122233333333222299999999985421
Q ss_pred hhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccc
Q 011286 316 DRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPAL 377 (489)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpAL 377 (489)
.... . .......+.++|..|+++... .++.+|++|| +...|+++
T Consensus 199 ~~~s--~-------------~G~v~~~lrqlL~~L~~~~k~--~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 199 GGNT--T-------------SGGISRGAFDLLSDIGAMAAS--RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHH--HTCEEEEECC-CSSCSSSH
T ss_pred cccc--c-------------cchHHHHHHHHHHHHHHHHhh--CCCEEEEEeC-CcccchhH
Confidence 1100 0 111234566677776665432 2367888888 66777775
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.83 E-value=2.1e-07 Score=92.93 Aligned_cols=181 Identities=17% Similarity=0.090 Sum_probs=105.6
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccC---
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVE--- 285 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~--- 285 (489)
+|..-+.++|-++..+.+.+.+.. | +.++++||+|+|||+|++.+++..+ ++.+++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 344556788887777776554431 2 5899999999999999999999886 5555543211
Q ss_pred ---Ch------------------------------------HHHHHH---HHHc---cCCeEEEEccchhhhhhhhhHHh
Q 011286 286 ---GN------------------------------------KDLRQI---LIAT---ENKSILVVEDIDCCLEMQDRLAK 320 (489)
Q Consensus 286 ---~~------------------------------------~~L~~l---~~~~---~~~sIL~iDdiD~~~~~~~~~~~ 320 (489)
+. ..+..+ +... ..+.+|+|||++.+....
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----- 144 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----- 144 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT-----
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC-----
Confidence 00 112222 2211 238999999999874200
Q ss_pred hhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCC---------CCCccccCCCceeeEEEeCC
Q 011286 321 AKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKD---------RLDPALLRPGRMDVHIHMSY 391 (489)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~---------~LDpALlRpGRfd~~I~~~~ 391 (489)
.......+..|-..++.. ..+.+|+|+.... .....+. ||....+++++
T Consensus 145 ---------------~~~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~p 202 (350)
T 2qen_A 145 ---------------SRGGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKP 202 (350)
T ss_dssp ---------------TTTTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCC
T ss_pred ---------------ccchhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCC
Confidence 000112222222333332 2355566654321 1112232 47767899999
Q ss_pred CCHHHHHHHHHHhhCcCCCCC-hHhHHHHHhccCCCHHHHHHH
Q 011286 392 CTPCGFKMLASNYLGITEHPL-FLEVEELIEKVEVTPADVAEQ 433 (489)
Q Consensus 392 p~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~~~spa~i~~~ 433 (489)
.+.++..+++...+...+... .+.+..+....+-.|.-+...
T Consensus 203 l~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~~ 245 (350)
T 2qen_A 203 FDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVF 245 (350)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999888765444333 334555666666677666544
No 95
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.82 E-value=5.6e-09 Score=97.94 Aligned_cols=120 Identities=16% Similarity=0.186 Sum_probs=77.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc--------C-CcEEEeecCccCC---------------------hHHHHHHHH-Hc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL--------N-FDVYDLELSSVEG---------------------NKDLRQILI-AT 297 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l--------~-~~~~~l~~s~~~~---------------------~~~L~~l~~-~~ 297 (489)
-.+|++|+||||||+++.+++... | .++|..++..+.. ...+...+. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 368999999999999998875443 4 6676555443310 122232221 12
Q ss_pred cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccc
Q 011286 298 ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPAL 377 (489)
Q Consensus 298 ~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpAL 377 (489)
..++||+|||++.+++.+.. .... ..+|..+..- .....-||++|+.++.||.++
T Consensus 86 ~~~~vliIDEAq~l~~~~~~------------------~~e~----~rll~~l~~~---r~~~~~iil~tq~~~~l~~~l 140 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSA------------------GSKI----PENVQWLNTH---RHQGIDIFVLTQGPKLLDQNL 140 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCT------------------TCCC----CHHHHGGGGT---TTTTCEEEEEESCGGGBCHHH
T ss_pred cCceEEEEEChhhhccCccc------------------cchh----HHHHHHHHhc---CcCCeEEEEECCCHHHHhHHH
Confidence 34899999999998642110 0001 1244444432 223467788888899999998
Q ss_pred cCCCceeeEEEeCCCCHH
Q 011286 378 LRPGRMDVHIHMSYCTPC 395 (489)
Q Consensus 378 lRpGRfd~~I~~~~p~~~ 395 (489)
.. |++.+++++.+...
T Consensus 141 r~--ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 141 RT--LVRKHYHIASNKMG 156 (199)
T ss_dssp HT--TEEEEEEEEECSSC
T ss_pred HH--HhheEEEEcCcccC
Confidence 88 99999999886544
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.75 E-value=2.7e-08 Score=122.95 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=95.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHHHcc-CCeEEEEccchhhhhhhhhHHhhhhccc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATE-NKSILVVEDIDCCLEMQDRLAKAKAAIP 326 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~-~~sIL~iDdiD~~~~~~~~~~~~~~~~~ 326 (489)
..|.+++||||||||++++++|+.+|.+++.++|++-.+...+.++|..+. .++++++|||+.+-.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~------------- 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE------------- 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh-------------
Confidence 468999999999999999999999999999999999888899999887664 489999999998732
Q ss_pred ccccccccCCCchhhHHHHH----HHhh---------cccccCCCCceEEEEecC----CCCCCCccccCCCceeeEEEe
Q 011286 327 DLYRSACNQGNRFQVTLSGL----LNFI---------DGLWSSCGDERIIIFTTN----HKDRLDPALLRPGRMDVHIHM 389 (489)
Q Consensus 327 ~~~~~~~~~~~~~~~~ls~L----L~~l---------dgl~s~~g~~~iiI~TTN----~~~~LDpALlRpGRfd~~I~~ 389 (489)
.....+++. ++.+ +|-.-.......|++|.| ....|+++|.+ || +.|.|
T Consensus 712 -----------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m 777 (2695)
T 4akg_A 712 -----------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSM 777 (2695)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEEC
T ss_pred -----------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEe
Confidence 111122111 2222 111001112346778888 45679999998 88 67999
Q ss_pred CCCCHHHHHHHHH
Q 011286 390 SYCTPCGFKMLAS 402 (489)
Q Consensus 390 ~~p~~~~~~~l~~ 402 (489)
.+|+.+...++.-
T Consensus 778 ~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 778 KSPQSGTIAEMIL 790 (2695)
T ss_dssp CCCCHHHHHHHHH
T ss_pred eCCCHHHHHHHHH
Confidence 9999998777653
No 97
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.74 E-value=5.1e-08 Score=121.21 Aligned_cols=135 Identities=18% Similarity=0.362 Sum_probs=94.5
Q ss_pred CceEEEECCCCCcHHHHHHH-HHHHcCCcEEEeecCccCChHHHHHHHHHc------------------cCCeEEEEccc
Q 011286 248 KRGYLLYGPPGTGKSSLIAA-MANYLNFDVYDLELSSVEGNKDLRQILIAT------------------ENKSILVVEDI 308 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~a-iA~~l~~~~~~l~~s~~~~~~~L~~l~~~~------------------~~~sIL~iDdi 308 (489)
++.+||+||||||||++++. +++..+.+++.++++.-.+...+...+... .++.|+|||||
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 46799999999999988765 454457788899999888888888777531 11369999999
Q ss_pred hhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhc--ccccCCC------CceEEEEecCCC-----CCCCc
Q 011286 309 DCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFID--GLWSSCG------DERIIIFTTNHK-----DRLDP 375 (489)
Q Consensus 309 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ld--gl~s~~g------~~~iiI~TTN~~-----~~LDp 375 (489)
+.... +. -..+..+.-|...+| |.+...+ .++.+|+|.|.+ ..|+|
T Consensus 1384 Nmp~~--D~-------------------yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~ 1442 (3245)
T 3vkg_A 1384 NLPST--DK-------------------YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTH 1442 (3245)
T ss_dssp TCCCC--CT-------------------TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCH
T ss_pred CCCCc--cc-------------------cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCH
Confidence 96421 10 011223333333343 2322211 346789999987 46899
Q ss_pred cccCCCceeeEEEeCCCCHHHHHHHHHHhhC
Q 011286 376 ALLRPGRMDVHIHMSYCTPCGFKMLASNYLG 406 (489)
Q Consensus 376 ALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~ 406 (489)
+|+| ||.. +.+++|+.++...|+..++.
T Consensus 1443 Rf~r--~F~v-i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1443 RFLR--HAPI-LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp HHHT--TCCE-EECCCCCHHHHHHHHHHHHH
T ss_pred HHHh--hceE-EEeCCCCHHHHHHHHHHHHH
Confidence 9999 9966 99999999999999876653
No 98
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.73 E-value=3.3e-08 Score=96.49 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=41.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHHHccCCeEEEEccchhh
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATENKSILVVEDIDCC 311 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~~~sIL~iDdiD~~ 311 (489)
+++++++||||||||||+++.|+|+.++. .-.++.+.- ...+.....+.|+++||....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~~------~f~l~~~~~k~i~l~Ee~~~~ 160 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTNE------NFPFNDCVDKMVIWWEEGKMT 160 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTCS------SCTTGGGSSCSEEEECSCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeecccc------ccccccccccEEEEeccccch
Confidence 55678999999999999999999998765 223333221 113444556778888887754
No 99
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.50 E-value=2.5e-06 Score=87.24 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=94.6
Q ss_pred cccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc--EEEeecCccCChHHHHH
Q 011286 215 TLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFD--VYDLELSSVEGNKDLRQ 292 (489)
Q Consensus 215 ~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~--~~~l~~s~~~~~~~L~~ 292 (489)
.++|.....+++.+.+.... +....+|++|++||||+.+++++....+.. ++.++|+.+....--..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 45666555555555443221 224569999999999999999999887554 99999999854433344
Q ss_pred HHH-----------------HccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhccc-c
Q 011286 293 ILI-----------------ATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGL-W 354 (489)
Q Consensus 293 l~~-----------------~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl-~ 354 (489)
+|. .......||||||+.+-. .....||..++.- .
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~---------------------------~~Q~~Ll~~l~~~~~ 251 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQ---------------------------RVQAKLLRVLETGSF 251 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCH---------------------------HHHHHHHHHHHHSEE
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhCCH---------------------------HHHHHHHHHHHhCCc
Confidence 442 123457899999998832 2233455555421 1
Q ss_pred cCCCC------ceEEEEecCCC-------CCCCccccCCCcee-eEEEeCCCCH--HHHHHHHHHhhC
Q 011286 355 SSCGD------ERIIIFTTNHK-------DRLDPALLRPGRMD-VHIHMSYCTP--CGFKMLASNYLG 406 (489)
Q Consensus 355 s~~g~------~~iiI~TTN~~-------~~LDpALlRpGRfd-~~I~~~~p~~--~~~~~l~~~~l~ 406 (489)
...|+ .+-+|+|||.. ..+.+.|.. |+. ..|++|+... +....|+..|+.
T Consensus 252 ~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 317 (368)
T 3dzd_A 252 TRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLK 317 (368)
T ss_dssp CCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHH
T ss_pred ccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHH
Confidence 11111 24578888853 233444543 443 3688888876 677777777764
No 100
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.41 E-value=3.4e-06 Score=86.87 Aligned_cols=154 Identities=16% Similarity=0.193 Sum_probs=94.5
Q ss_pred cccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CcEEEeecCccCChHH
Q 011286 213 FDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSSVEGNKD 289 (489)
Q Consensus 213 fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~---~~~~~l~~s~~~~~~~ 289 (489)
++.+++....-+.+.+.+... .+....+|++|++||||+++|+++..... .+++.++|+.+..+--
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 345566555555555555432 12345789999999999999999998874 6899999998753322
Q ss_pred HHHHHHH-----------------ccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcc
Q 011286 290 LRQILIA-----------------TENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDG 352 (489)
Q Consensus 290 L~~l~~~-----------------~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg 352 (489)
-..+|.. ....++||||||+.+-. .....||..++.
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~---------------------------~~q~~Ll~~l~~ 257 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSL---------------------------EAQAKLLRVIES 257 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCH---------------------------HHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCH---------------------------HHHHHHHHHHhc
Confidence 2333321 12357999999998832 222344544442
Q ss_pred c-ccCCC------CceEEEEecCCC-------CCCCccccCCCce-eeEEEeCCCCH--HHHHHHHHHhhC
Q 011286 353 L-WSSCG------DERIIIFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCTP--CGFKMLASNYLG 406 (489)
Q Consensus 353 l-~s~~g------~~~iiI~TTN~~-------~~LDpALlRpGRf-d~~I~~~~p~~--~~~~~l~~~~l~ 406 (489)
- ....| -.+-||+|||.. ..+.+.|.- |+ ...|++|+... +....|+..|+.
T Consensus 258 ~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 326 (387)
T 1ny5_A 258 GKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLK 326 (387)
T ss_dssp SEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred CcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHH
Confidence 1 00001 135688899863 334455543 44 35677777653 667777777764
No 101
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.38 E-value=1.5e-07 Score=98.32 Aligned_cols=140 Identities=17% Similarity=0.136 Sum_probs=80.3
Q ss_pred ccCCHHHHHHHHHHHHHHHhc-HHHHHHhCCCCCceEEEECCCCCcHHHHHHHH-HHHcCCcEEEeecCccCChHHHHHH
Q 011286 216 LAMDFDMKKMIMDDLERFLKR-KEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAM-ANYLNFDVYDLELSSVEGNKDLRQI 293 (489)
Q Consensus 216 l~~~~~~K~~i~~~l~~~l~~-~~~y~~~g~~~~rg~LL~GPpGtGKTsla~ai-A~~l~~~~~~l~~s~~~~~~~L~~l 293 (489)
+.|++.+|+.|.-.+. .. +. ....-++||.|+||| ||+|++++ ++.+....|...... +...|...
T Consensus 215 I~G~e~vK~aLll~L~---GG~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~s--s~~gLt~s 282 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF---SCVGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRT--ELTDLTAV 282 (506)
T ss_dssp STTCHHHHHHHHHHHT---TCCSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGC--CHHHHSEE
T ss_pred cCCCHHHHHHHHHHHc---CCccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCC--CccCceEE
Confidence 6777777776654332 10 00 011126999999999 99999999 777666555422211 11111100
Q ss_pred ------H------HHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccc-c----C
Q 011286 294 ------L------IATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLW-S----S 356 (489)
Q Consensus 294 ------~------~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~-s----~ 356 (489)
+ .......|+|||||+.+- ..+.+.|+..|+.-. + .
T Consensus 283 ~r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~---------------------------~~~qsaLlEaMEe~~VtI~G~~ 335 (506)
T 3f8t_A 283 LKEDRGWALRAGAAVLADGGILAVDHLEGAP---------------------------EPHRWALMEAMDKGTVTVDGIA 335 (506)
T ss_dssp EEESSSEEEEECHHHHTTTSEEEEECCTTCC---------------------------HHHHHHHHHHHHHSEEEETTEE
T ss_pred EEcCCCcccCCCeeEEcCCCeeehHhhhhCC---------------------------HHHHHHHHHHHhCCcEEECCEE
Confidence 0 112346899999999873 234455565554210 0 1
Q ss_pred CCCceEEEEecCCCC-----------CCCccccCCCceeeEEE-eCCCCHHH
Q 011286 357 CGDERIIIFTTNHKD-----------RLDPALLRPGRMDVHIH-MSYCTPCG 396 (489)
Q Consensus 357 ~g~~~iiI~TTN~~~-----------~LDpALlRpGRfd~~I~-~~~p~~~~ 396 (489)
-.....||+|+|..+ .|+++++. |||+.+. +++|+.+.
T Consensus 336 lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 336 LNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp EECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred cCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 123478999999875 78899999 9988554 46776544
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.36 E-value=1.8e-06 Score=107.73 Aligned_cols=129 Identities=17% Similarity=0.119 Sum_probs=93.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHHHHHHcc-CCeEEEEccchhhhhhhhhHHhhhhccc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQILIATE-NKSILVVEDIDCCLEMQDRLAKAKAAIP 326 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~~-~~sIL~iDdiD~~~~~~~~~~~~~~~~~ 326 (489)
..|..+.||+|||||.+++.+|..+|.+++.++|+.-.+...+.++|.... .++..++|||+.+-.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~------------- 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEE------------- 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCH-------------
Confidence 457789999999999999999999999999999998878888888887764 589999999998732
Q ss_pred ccccccccCCCchhhHHHHHHH----h---------hc-ccccCCCCceEEEEecC----CCCCCCccccCCCceeeEEE
Q 011286 327 DLYRSACNQGNRFQVTLSGLLN----F---------ID-GLWSSCGDERIIIFTTN----HKDRLDPALLRPGRMDVHIH 388 (489)
Q Consensus 327 ~~~~~~~~~~~~~~~~ls~LL~----~---------ld-gl~s~~g~~~iiI~TTN----~~~~LDpALlRpGRfd~~I~ 388 (489)
..-..+++.+. . ++ |-.-.-....-|++|.| ....|+++|.. || +.|.
T Consensus 671 -----------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~ 736 (3245)
T 3vkg_A 671 -----------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMA 736 (3245)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEE
T ss_pred -----------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEE
Confidence 01111111111 1 11 21101112356788888 34689999998 88 6699
Q ss_pred eCCCCHHHHHHHHHH
Q 011286 389 MSYCTPCGFKMLASN 403 (489)
Q Consensus 389 ~~~p~~~~~~~l~~~ 403 (489)
|++|+.+...++.-.
T Consensus 737 m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 737 MIKPDREMIAQVMLY 751 (3245)
T ss_dssp CCSCCHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHH
Confidence 999999988777543
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.31 E-value=9.4e-07 Score=106.31 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=71.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc---------------------CChHHHHHHHH---Hc
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV---------------------EGNKDLRQILI---AT 297 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~---------------------~~~~~L~~l~~---~~ 297 (489)
++.+++++||||||||||+||.++|.+. |..+..++.... ...+.+.+.+. +.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 7788999999999999999999998775 455555555432 11123333332 23
Q ss_pred cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCC
Q 011286 298 ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHK 370 (489)
Q Consensus 298 ~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~ 370 (489)
.++++||||+++.+.+.....+.... . ......+.++++|..|++.....+ ++|++||..
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~---~-------~~~~~~R~lsqlL~~L~~~~~~~~---v~VI~tNq~ 1563 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGD---S-------HMGLAARMMSQAMRKLAGNLKQSN---TLLIFINQI 1563 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTC---C-------CTTHHHHHHHHHHHHHHHHHHTTT---CEEEEEECE
T ss_pred CCCCEEEEcChhHhcccccccccccc---c-------ccchHHHHHHHHHHHHHHHHHhCC---cEEEEEccc
Confidence 67999999999988753321111000 0 011135678889999888765433 556666643
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.17 E-value=4.6e-06 Score=76.44 Aligned_cols=27 Identities=26% Similarity=0.543 Sum_probs=23.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcE
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDV 276 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~ 276 (489)
.+.|.||+|+|||||++.|++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999986544
No 105
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.14 E-value=1.6e-05 Score=80.02 Aligned_cols=126 Identities=16% Similarity=0.125 Sum_probs=81.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CC-cEEEeecCccCChHHHHHHHHHc------cCCeEEEEccchh-hhhhh
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYL---NF-DVYDLELSSVEGNKDLRQILIAT------ENKSILVVEDIDC-CLEMQ 315 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l---~~-~~~~l~~s~~~~~~~L~~l~~~~------~~~sIL~iDdiD~-~~~~~ 315 (489)
....||||||+|+||++.++++++.+ +. +...+.... ..++++++... ...-|++|||+|. +.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~--- 90 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN--- 90 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC---
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC---
Confidence 35689999999999999999998865 33 222222221 23444444332 3478999999997 52
Q ss_pred hhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCC------CCCCccccCCCceeeEEEe
Q 011286 316 DRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHK------DRLDPALLRPGRMDVHIHM 389 (489)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~------~~LDpALlRpGRfd~~I~~ 389 (489)
....+.|+..++.. ....++|++|+.+ .++-+++.. |. .+++|
T Consensus 91 ------------------------~~~~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~ 139 (343)
T 1jr3_D 91 ------------------------AAINEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTC 139 (343)
T ss_dssp ------------------------TTHHHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEE
T ss_pred ------------------------hHHHHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEe
Confidence 12345677777753 2335555555543 345567776 54 56999
Q ss_pred CCCCHHHHHHHHHHhhCcCC
Q 011286 390 SYCTPCGFKMLASNYLGITE 409 (489)
Q Consensus 390 ~~p~~~~~~~l~~~~l~~~~ 409 (489)
..++..+....++..+...+
T Consensus 140 ~~l~~~~l~~~l~~~~~~~g 159 (343)
T 1jr3_D 140 QTPEQAQLPRWVAARAKQLN 159 (343)
T ss_dssp CCCCTTHHHHHHHHHHHHTT
T ss_pred eCCCHHHHHHHHHHHHHHcC
Confidence 99999888877777665443
No 106
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.90 E-value=0.00027 Score=76.04 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=35.6
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHH
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~ 270 (489)
|.....++|-+...+.|.+.+.. +....+-++++||+|+|||+||..+++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSK-----------LKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTT-----------STTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCeecccHHHHHHHHHHHhc-----------ccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 44455678888777777654431 012346789999999999999998864
No 107
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.80 E-value=8.6e-05 Score=68.98 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=32.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSS 283 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~ 283 (489)
|++.+.-++|+||||+|||+|+..+|...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4666677999999999999999999986666777776544
No 108
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.72 E-value=0.0001 Score=77.34 Aligned_cols=69 Identities=22% Similarity=0.220 Sum_probs=39.8
Q ss_pred CCCceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CC-
Q 011286 199 TEIWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NF- 274 (489)
Q Consensus 199 ~~~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~- 274 (489)
...|.+ ...|.+|+.| .+++++.+. .+..++... .+.+++.||||||||+++.+++..+ +.
T Consensus 11 ~~~~~~--~~~p~~~~~L--n~~Q~~av~-~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~ 75 (459)
T 3upu_A 11 SSGLVP--RGSHMTFDDL--TEGQKNAFN-IVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGET 75 (459)
T ss_dssp ------------CCSSCC--CHHHHHHHH-HHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred cCCCcc--ccCCCccccC--CHHHHHHHH-HHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCc
Confidence 345765 6678889876 455655543 333333321 2379999999999999999999887 33
Q ss_pred cEEEeecC
Q 011286 275 DVYDLELS 282 (489)
Q Consensus 275 ~~~~l~~s 282 (489)
.++.+..+
T Consensus 76 ~il~~a~T 83 (459)
T 3upu_A 76 GIILAAPT 83 (459)
T ss_dssp CEEEEESS
T ss_pred eEEEecCc
Confidence 45555444
No 109
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.69 E-value=0.00098 Score=77.39 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=94.0
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc-------CCcEEEeec
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-------NFDVYDLEL 281 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l-------~~~~~~l~~ 281 (489)
.|.....++|-++..++|.+.+.. +....+-+.|+|++|+|||+||+.+++.. ...++.+++
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWK-----------LNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHT-----------TTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHhh-----------ccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 456667789988888877765531 11234568899999999999999888652 233556665
Q ss_pred CccCC---------------------------hHHHHHHHHHc----cCCeEEEEccchhhhhhhhhHHhhhhccccccc
Q 011286 282 SSVEG---------------------------NKDLRQILIAT----ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYR 330 (489)
Q Consensus 282 s~~~~---------------------------~~~L~~l~~~~----~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~ 330 (489)
+.... ...+...+... .++.+|||||++....
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~----------------- 250 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWV----------------- 250 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHH-----------------
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHH-----------------
Confidence 54210 11222222211 3378999999985411
Q ss_pred ccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCCCCCCCccccCCCceeeEEEeCC-CCHHHHHHHHHHhhCcCC
Q 011286 331 SACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDVHIHMSY-CTPCGFKMLASNYLGITE 409 (489)
Q Consensus 331 ~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~~~~LDpALlRpGRfd~~I~~~~-p~~~~~~~l~~~~l~~~~ 409 (489)
++.+ +.+.-||.||..+...... . .....+.++. .+.++-.+|+..+.....
T Consensus 251 -------------------~~~~----~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~ 303 (1249)
T 3sfz_A 251 -------------------LKAF----DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKK 303 (1249)
T ss_dssp -------------------HTTT----CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCS
T ss_pred -------------------HHhh----cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCCh
Confidence 1111 1123466777655433211 1 2234577775 888888888887775443
Q ss_pred CCChHhHHHHHhccCCCH
Q 011286 410 HPLFLEVEELIEKVEVTP 427 (489)
Q Consensus 410 ~~l~~~i~~l~~~~~~sp 427 (489)
..+.+...+++...+.-|
T Consensus 304 ~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 304 EDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp TTCCTHHHHHHHHTTTCH
T ss_pred hhCcHHHHHHHHHhCCCH
Confidence 333334444554444333
No 110
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.67 E-value=2.5e-05 Score=70.99 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=29.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
++.++|.||||||||++++++|..+++++++.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457999999999999999999999999988654
No 111
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.66 E-value=0.00018 Score=67.81 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=31.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH--c-------CCcEEEeecCc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY--L-------NFDVYDLELSS 283 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~--l-------~~~~~~l~~s~ 283 (489)
|++...-++|+||||+|||+|+..+|.. + +..++.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4666677999999999999999999985 3 34566665544
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.61 E-value=3.6e-05 Score=71.16 Aligned_cols=34 Identities=35% Similarity=0.376 Sum_probs=30.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
....++|.|||||||||+++++|..+++++++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3567999999999999999999999999987654
No 113
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.60 E-value=5.1e-05 Score=68.34 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=30.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s 282 (489)
+.-++|.||||+||||+++++|..++.+++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 35689999999999999999999999988876543
No 114
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.59 E-value=3.8e-05 Score=69.96 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=30.1
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
...+.-++|.||||+||||+++.+|..+++++++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 34456789999999999999999999999887764
No 115
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.56 E-value=6.4e-05 Score=66.97 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=28.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
-++|.||||+||||+++.+|..+++++++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 47899999999999999999999999887653
No 116
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.55 E-value=0.00042 Score=65.54 Aligned_cols=26 Identities=35% Similarity=0.426 Sum_probs=23.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHH
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMA 269 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA 269 (489)
|++...-+.|.||+|+|||||+++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45666779999999999999999998
No 117
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.55 E-value=0.00032 Score=65.41 Aligned_cols=37 Identities=22% Similarity=0.099 Sum_probs=28.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~ 280 (489)
|++.+..++|+||||+|||+|++.+|..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45666678999999999999999999654 44554443
No 118
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.55 E-value=0.00013 Score=73.04 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=31.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEeecCc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELSS 283 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~~~~l~~s~ 283 (489)
|++...-++|+||||+|||+|+..+|... +..++.++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56767779999999999999999999875 45666666554
No 119
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.52 E-value=0.00022 Score=72.44 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=47.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc---------------------CChHHHHHHHH---H
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV---------------------EGNKDLRQILI---A 296 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~---------------------~~~~~L~~l~~---~ 296 (489)
|++...-++|+||||+|||+|+..+|..+ +..++.++.... .+...+...+. .
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 46666678999999999999999998775 556666665432 11122222222 2
Q ss_pred ccCCeEEEEccchhhhh
Q 011286 297 TENKSILVVEDIDCCLE 313 (489)
Q Consensus 297 ~~~~sIL~iDdiD~~~~ 313 (489)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 24578999999988764
No 120
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.51 E-value=0.00015 Score=73.47 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=47.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC---------------------ChHHHHHHHH---H
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE---------------------GNKDLRQILI---A 296 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~---------------------~~~~L~~l~~---~ 296 (489)
|++..+-++|+||||+|||+|+..+|..+ +..++.++..... +...+..++. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 46666779999999999999999888654 5566666544311 1122222222 2
Q ss_pred ccCCeEEEEccchhhhh
Q 011286 297 TENKSILVVEDIDCCLE 313 (489)
Q Consensus 297 ~~~~sIL~iDdiD~~~~ 313 (489)
...+.+||||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 24589999999999863
No 121
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.51 E-value=0.00018 Score=72.72 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=31.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCcEEEeecCc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------NFDVYDLELSS 283 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---------~~~~~~l~~s~ 283 (489)
|++...-++|+||||+|||+|+..+|... +..++.++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56666678999999999999999999873 45666666544
No 122
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.45 E-value=6.6e-05 Score=67.96 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=28.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
++.++|.||||+|||++++++|..+++.++++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45699999999999999999999999888765
No 123
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.45 E-value=7.1e-05 Score=67.91 Aligned_cols=31 Identities=32% Similarity=0.520 Sum_probs=28.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
.++|.|+||+|||++++.+|..+|+++++.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999999988654
No 124
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.45 E-value=0.00016 Score=73.41 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=49.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC---------------------ChHHHHHHHHH---
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE---------------------GNKDLRQILIA--- 296 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~---------------------~~~~L~~l~~~--- 296 (489)
|++..+.++|+||||+|||+|+..+|..+ +..++.+++.... +...+..++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46777789999999999999999888764 5677777663211 12333333332
Q ss_pred ccCCeEEEEccchhhhh
Q 011286 297 TENKSILVVEDIDCCLE 313 (489)
Q Consensus 297 ~~~~sIL~iDdiD~~~~ 313 (489)
...+.+||||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 34678999999998863
No 125
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.45 E-value=6.4e-05 Score=67.79 Aligned_cols=30 Identities=33% Similarity=0.456 Sum_probs=27.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
.++|.||||+||||+++++|..+++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999988764
No 126
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.44 E-value=7.9e-05 Score=66.62 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=29.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
..++|.|+|||||||+++.+|..+++++++.|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47899999999999999999999999998763
No 127
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.42 E-value=0.00034 Score=75.56 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=42.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccC----------ChHHHHHHHHHcc-----------CCeEE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVE----------GNKDLRQILIATE-----------NKSIL 303 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~----------~~~~L~~l~~~~~-----------~~sIL 303 (489)
.+.+++.||||||||+++.+++..+ +..+..+..+... ....+.+++...+ ...+|
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvl 283 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLL 283 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEE
Confidence 3578999999999999999998765 6677665444320 1122333332111 24799
Q ss_pred EEccchhh
Q 011286 304 VVEDIDCC 311 (489)
Q Consensus 304 ~iDdiD~~ 311 (489)
+|||+..+
T Consensus 284 IIDEasml 291 (574)
T 3e1s_A 284 IVDEVSMM 291 (574)
T ss_dssp EECCGGGC
T ss_pred EEcCccCC
Confidence 99999866
No 128
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.42 E-value=8.1e-05 Score=66.65 Aligned_cols=31 Identities=42% Similarity=0.711 Sum_probs=27.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
..+.|.|||||||||+++.+|..++..+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence 4689999999999999999999999876653
No 129
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.41 E-value=8.4e-05 Score=67.83 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=28.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH-cCCcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANY-LNFDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~-l~~~~~~l~ 280 (489)
+..++|.|+||||||++++.+|.. +|++++++|
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 446899999999999999999999 788887654
No 130
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.40 E-value=0.00036 Score=84.33 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=52.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCccCC------------------------hHHHHHHHHH
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSVEG------------------------NKDLRQILIA 296 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~~~------------------------~~~L~~l~~~ 296 (489)
|++.++.+||+||||||||+|+.+++.+. |.+.+.+++..... ...+...+.+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 47778889999999999999999987654 67777777765411 1223334455
Q ss_pred ccCCeEEEEccchhhhh
Q 011286 297 TENKSILVVEDIDCCLE 313 (489)
Q Consensus 297 ~~~~sIL~iDdiD~~~~ 313 (489)
..++.+|+||++..+.+
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 56799999999999854
No 131
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.40 E-value=0.00044 Score=70.47 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=48.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc---------------------CChHHHHHHHHH---
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV---------------------EGNKDLRQILIA--- 296 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~---------------------~~~~~L~~l~~~--- 296 (489)
|++..+.++|+||||+|||+|+..+|..+ +.+++.+++..- .+...+...+..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 46667779999999999999999888764 566766665432 111233333332
Q ss_pred ccCCeEEEEccchhhhh
Q 011286 297 TENKSILVVEDIDCCLE 313 (489)
Q Consensus 297 ~~~~sIL~iDdiD~~~~ 313 (489)
.....+||||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 24578999999998863
No 132
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.35 E-value=0.00028 Score=71.50 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=26.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
|++...-+.|+||||+|||+|+..+|...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56667779999999999999999999887
No 133
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.34 E-value=0.00014 Score=66.72 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=22.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEe
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDL 279 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l 279 (489)
.-++++||||+|||+++..++..+ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 457899999999999986666543 5555443
No 134
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.34 E-value=0.00011 Score=66.53 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=29.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
.+.-++|.||||+||||+++.+|..+++.+++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 456789999999999999999999999887765
No 135
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.34 E-value=0.00015 Score=66.96 Aligned_cols=33 Identities=30% Similarity=0.483 Sum_probs=29.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
+.-++|.||||+||||+++.+|..+++++++++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 345899999999999999999999999887663
No 136
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.34 E-value=0.00011 Score=65.81 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=28.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
.-++|.|+||+|||++++.+|..+++++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 35899999999999999999999999887653
No 137
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.33 E-value=0.00013 Score=70.34 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=29.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeecC
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s 282 (489)
-++|.||||||||++++++|..++..+++.|.-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999998877653
No 138
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.32 E-value=0.00012 Score=66.39 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=28.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
+.-++|.|+||+||||+++.+|..++.++++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 35689999999999999999999999877654
No 139
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.29 E-value=0.00013 Score=64.66 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=26.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
-++|.||||+||||+++.+ ..+|++++++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5789999999999999999 9999988765
No 140
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.29 E-value=0.007 Score=64.76 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHH
Q 011286 217 AMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 217 ~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~ 270 (489)
+|-++.+++|.+.+..- +....+.+.++|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 38888888887766321 112246788999999999999999997
No 141
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.28 E-value=0.0012 Score=69.03 Aligned_cols=125 Identities=16% Similarity=0.123 Sum_probs=80.8
Q ss_pred CeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEecCC----------
Q 011286 300 KSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFTTNH---------- 369 (489)
Q Consensus 300 ~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~TTN~---------- 369 (489)
|.|++|||+|.+. ....+.||..|+.- ... ++|++||.
T Consensus 296 ~~VliIDEa~~l~---------------------------~~a~~aLlk~lEe~----~~~-~~il~tn~~~~~i~~~~~ 343 (456)
T 2c9o_A 296 PGVLFVDEVHMLD---------------------------IECFTYLHRALESS----IAP-IVIFASNRGNCVIRGTED 343 (456)
T ss_dssp ECEEEEESGGGCB---------------------------HHHHHHHHHHTTST----TCC-EEEEEECCSEEECBTTSS
T ss_pred ceEEEEechhhcC---------------------------HHHHHHHHHHhhcc----CCC-EEEEecCCcccccccccc
Confidence 4799999999883 34567788888763 233 45545533
Q ss_pred ---CCCCCccccCCCceeeEEEeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhccCCCHHHHHHHHhcCCCHHHHHHH
Q 011286 370 ---KDRLDPALLRPGRMDVHIHMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKVEVTPADVAEQLMRDEVPKIALSG 446 (489)
Q Consensus 370 ---~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~spa~i~~~l~~~~~~~~al~~ 446 (489)
++.|+|.++. ||.. +.|++++.++...+++..+...+..+.++...++.. . -..+++..|+..
T Consensus 344 ~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~----------~-a~~g~~r~a~~l 409 (456)
T 2c9o_A 344 ITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGE----------I-GTKTTLRYSVQL 409 (456)
T ss_dssp CEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH----------H-HHHSCHHHHHHT
T ss_pred ccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH----------H-ccCCCHHHHHHH
Confidence 7889999999 9977 699999999999999887654433333333222211 0 113688888888
Q ss_pred HHHHHHHHHhhccccccchHHHHH
Q 011286 447 LIQFLQIKKRETGESKATEAEETA 470 (489)
Q Consensus 447 l~~~l~~~~~~~~~~~~~~~~~~~ 470 (489)
+..+..............++...+
T Consensus 410 l~~a~~~A~~~~~~~v~~~~v~~~ 433 (456)
T 2c9o_A 410 LTPANLLAKINGKDSIEKEHVEEI 433 (456)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHHHhhcCCCccCHHHHHHH
Confidence 877755555444444444444433
No 142
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.27 E-value=0.00059 Score=66.42 Aligned_cols=29 Identities=28% Similarity=0.239 Sum_probs=24.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
|++...-++|+||||+|||+|+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34556679999999999999999998654
No 143
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.26 E-value=0.0003 Score=70.02 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
|++...-++|+||||+|||+|+..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5666677999999999999999999875
No 144
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.26 E-value=0.00015 Score=66.06 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=29.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
+.-++|.||||+||||+++.+|..++.++++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 356899999999999999999999999877654
No 145
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.26 E-value=0.00016 Score=64.36 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=27.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
.++|.|+||+||||+++.+|..+++++++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 3789999999999999999999999887653
No 146
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.25 E-value=0.00018 Score=66.31 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=28.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
+.-++|.||||+||||+++.++..+++.+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 346899999999999999999999998777643
No 147
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.25 E-value=0.00039 Score=68.35 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=28.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
.+..++|.||||+||||++++++..++..++.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 35668999999999999999999998544555554
No 148
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.23 E-value=0.00013 Score=66.05 Aligned_cols=31 Identities=29% Similarity=0.614 Sum_probs=27.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
.-++|.||||+||||+++.+|..+++++++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 3588999999999999999999999877654
No 149
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.23 E-value=0.00014 Score=68.26 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=28.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
..++|.||||+||||+++.+|..+++++++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4589999999999999999999999888765
No 150
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.22 E-value=0.00011 Score=65.94 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=24.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHH-HcCCcEE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMAN-YLNFDVY 277 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~-~l~~~~~ 277 (489)
+.-++|.||||+||||+++.++. .+++.++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 35689999999999999999999 5665444
No 151
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.22 E-value=0.00016 Score=66.03 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=28.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
+.-++|.||||+||||+++.+|..+++.+++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35689999999999999999999999877765
No 152
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.21 E-value=0.00017 Score=65.63 Aligned_cols=37 Identities=30% Similarity=0.358 Sum_probs=29.7
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
+..+.-+.|.||||+||||+++++|..++...+.++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~ 42 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence 4455678999999999999999999987666555543
No 153
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.20 E-value=0.00016 Score=65.57 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=26.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC-----CcEEE
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLN-----FDVYD 278 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~-----~~~~~ 278 (489)
.-++|.||||+||||+++.+|..++ +++++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 4689999999999999999999987 66654
No 154
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.20 E-value=0.00018 Score=67.87 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=28.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
+.-++|.||||+||||+++.+|..+++.++++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 45689999999999999999999999887755
No 155
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.19 E-value=0.00019 Score=66.85 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=26.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
++|.||||+||||+++.+|..+++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999999888766
No 156
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.18 E-value=0.00023 Score=66.67 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=27.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
.-++|.||||+||||+++.+|..++.++++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4689999999999999999999999877665
No 157
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.17 E-value=0.00021 Score=66.51 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=26.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
++|.||||+||||+++.+|..++..+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999999988765
No 158
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.15 E-value=0.00028 Score=63.33 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=27.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
+..++|.||||+||||+++.++..+|..+++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 34688999999999999999999998776654
No 159
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.14 E-value=0.0009 Score=69.00 Aligned_cols=28 Identities=32% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
|++...-++|+||||||||+|+..+|-.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 5666677999999999999999977643
No 160
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.13 E-value=0.0011 Score=66.07 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=43.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCcEEEeecCcc---------------------CChHHH-HHHHHH
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL-----NFDVYDLELSSV---------------------EGNKDL-RQILIA 296 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~~~~l~~s~~---------------------~~~~~L-~~l~~~ 296 (489)
|++.. -++++||||+|||+|+..++... +..+..++...- .+.+.+ ..+...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 34544 47899999999999977655443 455666655331 112222 222222
Q ss_pred -----ccCCeEEEEccchhhhh
Q 011286 297 -----TENKSILVVEDIDCCLE 313 (489)
Q Consensus 297 -----~~~~sIL~iDdiD~~~~ 313 (489)
..++.+|+||-|..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 24589999999999864
No 161
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.13 E-value=0.00028 Score=64.99 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=28.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
.-++|.||||+||||+++.+|..+++.+++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 45889999999999999999999998777654
No 162
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.11 E-value=0.00043 Score=62.46 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=29.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
+.-+.|.|++|+||||+++.++..+ |++++.++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 4557899999999999999999998 989887763
No 163
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.11 E-value=0.0003 Score=66.60 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=27.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
..++|.||||+||||+++.+|..+++.+++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4689999999999999999999999887765
No 164
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.10 E-value=0.0016 Score=61.35 Aligned_cols=39 Identities=26% Similarity=0.193 Sum_probs=29.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH----cCCcEEEeecC
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY----LNFDVYDLELS 282 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~----l~~~~~~l~~s 282 (489)
|++...-++++|+||+|||+|+..+|.. .+.+++.+++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 5666677999999999999999876543 25666665543
No 165
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.07 E-value=0.00027 Score=63.70 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=22.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~ 277 (489)
.-++|.|+||+||||+++.+|..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46889999999999999999999999877
No 166
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.06 E-value=0.0002 Score=67.10 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=27.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
+.-++|.||||+||||+++.+|..++..++++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45689999999999999999999999765543
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.05 E-value=0.0004 Score=64.08 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=26.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
+.-+.|.||||+||||+++++|..+|..+++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 4568899999999999999999999765554
No 168
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.05 E-value=0.00048 Score=66.24 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=30.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~ 284 (489)
.+..++|.||||+||||+++.++..++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 35568999999999999999999999866665655443
No 169
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.02 E-value=0.0005 Score=62.31 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=28.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 251 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
+.|.|+||+||||+++.++..+ |+++++.+-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 7899999999999999999998 899988763
No 170
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.01 E-value=0.00033 Score=65.36 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=26.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
++|.||||+||||+++.+|..+++++++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999999888765
No 171
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.00 E-value=0.00045 Score=69.11 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=30.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
++.++|.||+|+|||+++.++|..++..++++|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 4578999999999999999999999998888864
No 172
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.00 E-value=0.00041 Score=66.38 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=29.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
.+.-++|.||||+||||+++.+++.++...++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 356789999999999999999999999887765
No 173
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.00 E-value=0.00046 Score=65.81 Aligned_cols=39 Identities=18% Similarity=0.513 Sum_probs=27.3
Q ss_pred HHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 239 FYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 239 ~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
++..++.. +.-+.|.||||+||||++++||..+|...++
T Consensus 19 ~~~~~~~~-~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 19 YFQSMASK-LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp -------C-CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred HHHHhcCC-CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 33444332 4578999999999999999999999876543
No 174
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.00 E-value=0.00052 Score=81.96 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=52.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---cCCcEEEeecCccC---------------------ChHHHHHHHHHc--
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LNFDVYDLELSSVE---------------------GNKDLRQILIAT-- 297 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~---l~~~~~~l~~s~~~---------------------~~~~L~~l~~~~-- 297 (489)
|++.++.++|+||||||||+|+.++|.. .+..++.++..... ....+.+++...
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~ 109 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 109 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHh
Confidence 6788889999999999999999998765 36777777766531 233344444333
Q ss_pred -cCCeEEEEccchhhhh
Q 011286 298 -ENKSILVVEDIDCCLE 313 (489)
Q Consensus 298 -~~~sIL~iDdiD~~~~ 313 (489)
..+.+||||++..+..
T Consensus 110 ~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 110 SGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 5689999999999865
No 175
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.95 E-value=0.0006 Score=64.39 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=27.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~ 277 (489)
..++-++|.||||+||+|.++.||..++++.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 34567889999999999999999999987654
No 176
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.92 E-value=0.00046 Score=64.99 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=26.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
++|.||||+||||+++.+|..+++++++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999999876654
No 177
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.91 E-value=0.00029 Score=71.29 Aligned_cols=50 Identities=18% Similarity=0.395 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 220 FDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 220 ~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
+.+.+.+++.+...+.. .....++|.||||+|||++++++|+.++++++.
T Consensus 5 ~~L~~~il~~l~~~i~~---------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIED---------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp HHHHHHHHHHHHHTTTT---------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 45566666665543321 123469999999999999999999999888743
No 178
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.90 E-value=0.0047 Score=58.45 Aligned_cols=63 Identities=10% Similarity=0.237 Sum_probs=40.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCc-------c-------------CChHHHHHHHHHc---cCCeE
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS-------V-------------EGNKDLRQILIAT---ENKSI 302 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~-------~-------------~~~~~L~~l~~~~---~~~sI 302 (489)
.-++++||||+|||+++..++..+ +..++.+.... + ....++...+... ..+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 346788999999999888777665 55666552111 1 1112343333332 23789
Q ss_pred EEEccchhh
Q 011286 303 LVVEDIDCC 311 (489)
Q Consensus 303 L~iDdiD~~ 311 (489)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999865
No 179
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.89 E-value=0.00044 Score=63.69 Aligned_cols=31 Identities=29% Similarity=0.297 Sum_probs=27.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
-+.|.||+||||||+++.+|+ +|+++++.+-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEccH
Confidence 478999999999999999999 8988877653
No 180
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.84 E-value=0.00071 Score=63.28 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=25.1
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
++|.||||+||+|.++.||..+|++.+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 6889999999999999999999887653
No 181
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.84 E-value=0.0015 Score=59.98 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=26.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCC--cEEEe
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNF--DVYDL 279 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~--~~~~l 279 (489)
.-++|.||||+||||+++.+|..++. +++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 45889999999999999999999877 35443
No 182
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.83 E-value=0.0008 Score=62.84 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=27.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
.-+.|.|||||||||+++.+|..+++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4588999999999999999999999877653
No 183
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.83 E-value=0.00061 Score=65.72 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=29.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
+..+.|.||||+||||+++.+|..+++++++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 457999999999999999999999999988754
No 184
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.83 E-value=0.00074 Score=61.90 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=28.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc-CCcEEEeec
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLEL 281 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l-~~~~~~l~~ 281 (489)
.-+.|.||||+||||+++.+|..+ |+++++++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 458899999999999999999999 588887754
No 185
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.82 E-value=0.00072 Score=61.78 Aligned_cols=28 Identities=25% Similarity=0.674 Sum_probs=25.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~ 277 (489)
-+.|.|+||+||||+++.+|..++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 3789999999999999999999998665
No 186
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.82 E-value=0.00091 Score=60.86 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=26.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 251 YLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
+.|.|||||||||+++.+++.+ |++++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6799999999999999999999 998876543
No 187
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.81 E-value=0.00037 Score=63.04 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcC
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
-++|.||||+||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999886
No 188
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.81 E-value=0.00068 Score=62.26 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=28.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
-+.|.||+|+|||++++.+|..+++++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5789999999999999999999999988764
No 189
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.80 E-value=0.00057 Score=63.06 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=26.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
-+.|.||+||||||+++.+|. +|+++++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 478999999999999999998 898887654
No 190
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.80 E-value=0.0025 Score=64.63 Aligned_cols=62 Identities=29% Similarity=0.508 Sum_probs=39.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC----CcEEEeec-Ccc---------------CChHHHHHHHHHc--cCCeEEEE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLEL-SSV---------------EGNKDLRQILIAT--ENKSILVV 305 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~----~~~~~l~~-s~~---------------~~~~~L~~l~~~~--~~~sIL~i 305 (489)
+..+++.||+|+||||+.+++++.+. ..++.+.- ... .....+...+..+ .+|.||++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 34588999999999999999998873 33333211 110 0111233344333 56999999
Q ss_pred ccch
Q 011286 306 EDID 309 (489)
Q Consensus 306 DdiD 309 (489)
||+-
T Consensus 203 DEp~ 206 (356)
T 3jvv_A 203 GEMR 206 (356)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9985
No 191
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.77 E-value=0.0012 Score=60.72 Aligned_cols=34 Identities=29% Similarity=0.311 Sum_probs=27.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~ 280 (489)
.+.-+.|.||+|+||||+++++|..+ |...+.++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 35668899999999999999999988 55433444
No 192
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.76 E-value=0.00073 Score=62.47 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=28.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
-+.|.|++||||||+++.+|..+|+++++.|
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4779999999999999999999999988764
No 193
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.74 E-value=0.001 Score=63.39 Aligned_cols=32 Identities=34% Similarity=0.380 Sum_probs=28.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
+.-+.|.||||+||||+++.+|..+++++++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 34688999999999999999999999887764
No 194
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.71 E-value=0.0012 Score=63.70 Aligned_cols=32 Identities=38% Similarity=0.463 Sum_probs=27.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH---cCCcEEEee
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY---LNFDVYDLE 280 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~---l~~~~~~l~ 280 (489)
.-++|.|+||+||||+++.++.. .|++++.++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 46889999999999999999998 788887454
No 195
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.71 E-value=0.0014 Score=62.06 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=27.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
-.+++.|+||+|||+++-++|..+ |.++..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 468999999999999999998876 777765554
No 196
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.70 E-value=0.0021 Score=59.76 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
|++...-+.|.||+|+|||+|++.+|..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666678999999999999999999855
No 197
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.67 E-value=0.001 Score=60.88 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=28.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
+.-+.|.|++||||||+++.+|.. |+++++.|
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 346889999999999999999998 98888765
No 198
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.66 E-value=0.0052 Score=56.90 Aligned_cols=111 Identities=11% Similarity=0.128 Sum_probs=67.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCcc--C-Ch-----------------------------HHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSSV--E-GN-----------------------------KDLRQ 292 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~~--~-~~-----------------------------~~L~~ 292 (489)
+..+++|+++|.|||++|-++|-.. |..++.+....- . ++ .....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3458899999999999999988765 788877743321 0 00 11122
Q ss_pred HHH----Hc--cCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccCCCCceEEEEe
Q 011286 293 ILI----AT--ENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSSCGDERIIIFT 366 (489)
Q Consensus 293 l~~----~~--~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~~g~~~iiI~T 366 (489)
.+. .. ..-.+|+|||+-..... .-.....+++.+..- .+..-||+|
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~------------------------g~l~~~ev~~~l~~R----p~~~~vIlT 159 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAY------------------------DYLPLEEVISALNAR----PGHQTVIIT 159 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHT------------------------TSSCHHHHHHHHHTS----CTTCEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccC------------------------CCCCHHHHHHHHHhC----cCCCEEEEE
Confidence 222 12 23579999999875431 011223455555542 355778999
Q ss_pred cCCCCCCCccccCCCceeeEEEeCC
Q 011286 367 TNHKDRLDPALLRPGRMDVHIHMSY 391 (489)
Q Consensus 367 TN~~~~LDpALlRpGRfd~~I~~~~ 391 (489)
+|.+ +++|+- .-|.+-+|..
T Consensus 160 Gr~a---p~~l~e--~AD~VTem~~ 179 (196)
T 1g5t_A 160 GRGC---HRDILD--LADTVSELRP 179 (196)
T ss_dssp CSSC---CHHHHH--HCSEEEECCC
T ss_pred CCCC---cHHHHH--hCcceeeecc
Confidence 9875 556665 6676666643
No 199
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.65 E-value=0.0053 Score=55.11 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=17.8
Q ss_pred CCceEEEECCCCCcHHHHHHH
Q 011286 247 WKRGYLLYGPPGTGKSSLIAA 267 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~a 267 (489)
.+.-+.|.||+|+|||||+++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 345588999999999999993
No 200
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.60 E-value=0.011 Score=54.82 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=33.3
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhC---CCCCceEEEECCCCCcHHHH-HHHHHHH
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVG---KAWKRGYLLYGPPGTGKSSL-IAAMANY 271 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g---~~~~rg~LL~GPpGtGKTsl-a~aiA~~ 271 (489)
.+|+++...+.+.+.+.+.- +..+..|+... ....+.+++.+|+|+|||.. +..+...
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 57999988887777664321 11111111110 11135799999999999976 3344433
No 201
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.59 E-value=0.0038 Score=68.22 Aligned_cols=58 Identities=26% Similarity=0.363 Sum_probs=37.7
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecCc
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELSS 283 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s~ 283 (489)
..|-+--+++.+++.|...+. . +.-.|++||||||||+++..+..++ +..+..+..+.
T Consensus 183 ~~~~~~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 183 LTFFNTCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp CCCSSTTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred ccccCCCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 334334578899888866553 1 1247999999999998666554443 56666665553
No 202
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.58 E-value=0.00054 Score=63.26 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=24.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~ 277 (489)
+.-+.|.|+||+||||+++.+|..++...+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 345889999999999999999998755433
No 203
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.57 E-value=0.01 Score=51.35 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
.+++.|+||+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 204
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.57 E-value=0.0013 Score=61.09 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=28.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
..+.|.||||||||++++.+|..+|+++++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 45889999999999999999999999887754
No 205
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.54 E-value=0.0077 Score=55.02 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=18.0
Q ss_pred ceEEEECCCCCcHHHH-HHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSL-IAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsl-a~aiA~~l 272 (489)
+.+++.+|+|+|||.. +..+...+
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHH
Confidence 5799999999999976 33444443
No 206
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.54 E-value=0.0063 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l 272 (489)
.+++.|++|+|||+|+.++++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998653
No 207
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.53 E-value=0.0014 Score=61.05 Aligned_cols=31 Identities=35% Similarity=0.467 Sum_probs=27.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
.-+.|.|++|+||||+++.+|. +|+++++.|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 4688999999999999999998 898887764
No 208
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.48 E-value=0.015 Score=63.19 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=20.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.+-+++.||||||||+++.++...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3578999999999999988776654
No 209
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.47 E-value=0.0081 Score=62.42 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=27.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
++-+++.||+|+||||++..+|..+ +..+..+++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 5668899999999999999999877 566655543
No 210
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.47 E-value=0.0018 Score=61.28 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=28.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
+..+.|.||+|+|||++++.+|..+|+++++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 34578999999999999999999999888765
No 211
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.47 E-value=0.0022 Score=61.56 Aligned_cols=30 Identities=37% Similarity=0.589 Sum_probs=27.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
.-+.|.||+|+||||+++.+|..+|+.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 458899999999999999999999998775
No 212
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.46 E-value=0.0019 Score=58.52 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=23.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
++-+.|.||+|+|||||+++++..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999999864
No 213
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.44 E-value=0.011 Score=54.59 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=33.0
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCC---CCCceEEEECCCCCcHHHHHHHHH
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK---AWKRGYLLYGPPGTGKSSLIAAMA 269 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~---~~~rg~LL~GPpGtGKTsla~aiA 269 (489)
+..+|+++...+.+.+.+.+.- +..+..|+...+ ...+.+++.+|+|+|||..+...+
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~ 72 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 72 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTT---CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHH
Confidence 4457888888887777765410 111111111110 013569999999999998655433
No 214
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.43 E-value=0.0015 Score=65.72 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=31.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~ 284 (489)
+-++|.||+|+|||+|+..+|..++..+++.|--.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 468899999999999999999999998888776543
No 215
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.43 E-value=0.0013 Score=60.72 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=26.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-CCcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l-~~~~~~l~ 280 (489)
+.-+.|.||||+||||+++.++..+ +..++..|
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 3457899999999999999999988 66655544
No 216
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.42 E-value=0.0013 Score=64.51 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=26.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-CCcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL-NFDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l-~~~~~~l~ 280 (489)
+.-++|.||||+||||+++.++..+ ++.+++.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 3568999999999999999999974 66665443
No 217
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.41 E-value=0.0019 Score=59.56 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=25.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
.+.++-++|.||||+||||+++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 44566789999999999999999999885
No 218
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.41 E-value=0.0029 Score=65.43 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=31.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeecCccCChHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSVEGNKDLRQ 292 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~~~~~~L~~ 292 (489)
+.-++|.||||+||||+++.++..+++.+++. ..+..-..+..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~--D~~~~~~~~~~ 300 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR--DTLGSWQRCVS 300 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCG--GGSCSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc--chHHHHHHHHH
Confidence 45688999999999999999999998765543 34433333333
No 219
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.40 E-value=0.0021 Score=61.54 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=25.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFD 275 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~ 275 (489)
+.-+.|.||||+||||+++.+|..++.+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 4568899999999999999999999986
No 220
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.39 E-value=0.011 Score=63.28 Aligned_cols=40 Identities=8% Similarity=0.113 Sum_probs=32.4
Q ss_pred ceEEEEecCCCC--CCCccccCCCceeeEEEeCCCCHHHHHHHH
Q 011286 360 ERIIIFTTNHKD--RLDPALLRPGRMDVHIHMSYCTPCGFKMLA 401 (489)
Q Consensus 360 ~~iiI~TTN~~~--~LDpALlRpGRfd~~I~~~~p~~~~~~~l~ 401 (489)
++-+|++|.+|. .|+..+.. -|...|-|...+..+-+.++
T Consensus 378 GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 378 GIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHH
T ss_pred CeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhc
Confidence 488999999987 78877765 67788889999988877766
No 221
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.37 E-value=0.0036 Score=56.68 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=26.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC---CcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~---~~~~~l~ 280 (489)
+.-++|.|+||+||||+++.+|..++ .++..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 45688999999999999999999874 4444443
No 222
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.37 E-value=0.0025 Score=63.25 Aligned_cols=35 Identities=20% Similarity=0.480 Sum_probs=30.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
.++-+++.||+|+|||+|+..+|..++..++..|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 35678899999999999999999999988777654
No 223
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.36 E-value=0.0088 Score=55.09 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=22.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
...++|.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4569999999999999999999864
No 224
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.36 E-value=0.001 Score=61.46 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
+.-+.|.|+||+||||+++.+|..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999874
No 225
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.36 E-value=0.0058 Score=56.30 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=27.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
+.-+.|.||+|+||||+++.++..+ +.+++.++..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3457899999999999999999976 6666666443
No 226
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.33 E-value=0.0028 Score=59.62 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=29.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
|++.+.-++|+||||+|||+|+..+|... +..++.++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 56666779999999999999988776543 5556655543
No 227
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.32 E-value=0.0024 Score=58.00 Aligned_cols=26 Identities=35% Similarity=0.607 Sum_probs=22.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
.-+.|.||||+||||+++.++..++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 35789999999999999999986654
No 228
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.32 E-value=0.0079 Score=62.61 Aligned_cols=62 Identities=23% Similarity=0.361 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 220 FDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 220 ~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
+.+++.+.+.|...+..+...... ...+.-+++.||||+||||++..+|.++ |..+..+++.
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345555666666555431100000 1235678999999999999999999877 6666665544
No 229
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.31 E-value=0.0085 Score=62.59 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=30.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeec
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLEL 281 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~ 281 (489)
|++.+.-+++.||||+|||+|+..+|..+ |.++..+++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56666779999999999999999888754 556766654
No 230
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.29 E-value=0.0021 Score=59.77 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=27.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
.++++|.||+|+|||+|+.++|.... .++..|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 57899999999999999999999876 665444
No 231
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.29 E-value=0.024 Score=60.09 Aligned_cols=41 Identities=5% Similarity=0.118 Sum_probs=32.4
Q ss_pred ceEEEEecCCCC--CCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011286 360 ERIIIFTTNHKD--RLDPALLRPGRMDVHIHMSYCTPCGFKMLAS 402 (489)
Q Consensus 360 ~~iiI~TTN~~~--~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~ 402 (489)
++-+|++|.++. .++..+.. -+...|-|...+..+.+.++.
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 377888999886 57776665 677888999999988887764
No 232
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.27 E-value=0.0022 Score=58.67 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
..+.-+.|.||+|+||||+++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 344568899999999999999999987
No 233
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.26 E-value=0.017 Score=52.75 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=15.1
Q ss_pred ceEEEECCCCCcHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIA 266 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~ 266 (489)
+.+++.+|+|+|||..+.
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 679999999999996433
No 234
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.21 E-value=0.0024 Score=62.38 Aligned_cols=31 Identities=29% Similarity=0.297 Sum_probs=26.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEee
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLE 280 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~ 280 (489)
.-+.|.|+||+||||+++.++ .+|+++++.|
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 458899999999999999999 6888877654
No 235
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.21 E-value=0.0034 Score=58.19 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=28.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC----CcEEEee
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLE 280 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~----~~~~~l~ 280 (489)
..+.-++|.|+||+||||+++.++..++ .+++.++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3355688999999999999999999875 4566565
No 236
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.20 E-value=0.004 Score=57.69 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=23.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
.+.-+.|.||+|+|||||+++|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344578999999999999999999875
No 237
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.19 E-value=0.0028 Score=63.77 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=28.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
.-+++.||+|+|||+|+..+|..++..++..|-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999977766553
No 238
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.18 E-value=0.006 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l 272 (489)
.+++.|++|+|||+|+.++.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 239
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.15 E-value=0.013 Score=53.71 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
+.+++.+|+|+|||.++...+...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999887766543
No 240
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.14 E-value=0.02 Score=49.50 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..+++.|++|+|||+|+.++++.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 241
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.13 E-value=0.003 Score=58.58 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
+.-+.|.||+|+||||+++.++..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 456889999999999999999998753
No 242
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.12 E-value=0.003 Score=65.82 Aligned_cols=95 Identities=18% Similarity=0.263 Sum_probs=63.0
Q ss_pred HHHHHHccCCeEEEEccchhhhhhhhhHHhhhhcccccccccccCCCchhhHHHHHHHhhcccccC------CCCceEEE
Q 011286 291 RQILIATENKSILVVEDIDCCLEMQDRLAKAKAAIPDLYRSACNQGNRFQVTLSGLLNFIDGLWSS------CGDERIII 364 (489)
Q Consensus 291 ~~l~~~~~~~sIL~iDdiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~LL~~ldgl~s~------~g~~~iiI 364 (489)
+..+..+....||++||||.+....... .. +.....+...||..+||.... ..+++++|
T Consensus 242 ~~ai~~ae~~~il~~DEidki~~~~~~~---~~------------D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI 306 (444)
T 1g41_A 242 QKAIDAVEQNGIVFIDEIDKICKKGEYS---GA------------DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 306 (444)
T ss_dssp HHHHHHHHHHCEEEEETGGGGSCCSSCS---SS------------HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred HHHHHHhccCCeeeHHHHHHHhhccCCC---CC------------CchHHHHHHHHHHHhcccccccccceecCCcEEEE
Confidence 3444455567899999999996421100 00 011123456789999984211 13568889
Q ss_pred Eec----CCCCCCCccccCCCceeeEEEeCCCCHHHHHHHHH
Q 011286 365 FTT----NHKDRLDPALLRPGRMDVHIHMSYCTPCGFKMLAS 402 (489)
Q Consensus 365 ~TT----N~~~~LDpALlRpGRfd~~I~~~~p~~~~~~~l~~ 402 (489)
+|. +.+..+-|.|+. ||+.+|+|+.++.+++..|+.
T Consensus 307 ~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 307 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp EEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred eccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 887 244445588887 999999999999999999883
No 243
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.12 E-value=0.018 Score=65.79 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=38.1
Q ss_pred cCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHH------cCCcEEEeecCc
Q 011286 217 AMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANY------LNFDVYDLELSS 283 (489)
Q Consensus 217 ~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~------l~~~~~~l~~s~ 283 (489)
+|-++..+.|.+.+.. ....+-+.++||+|.|||+||+.+++. +...++.++++.
T Consensus 131 VGRe~eLeeL~elL~~------------~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE------------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCHHHHHHHHHHHHH------------CCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHhc------------cCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 6777777777665531 112467899999999999999999863 344466666554
No 244
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.09 E-value=0.014 Score=57.57 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=27.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeecC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELS 282 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~s 282 (489)
++.++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4568899999999999999999766 4566655543
No 245
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.08 E-value=0.007 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l 272 (489)
.+++.|++|+|||+|+.++.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 246
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.08 E-value=0.0037 Score=58.00 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=27.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
.-+.|.||+|||||++++.+|..+|+++++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 358899999999999999999999999985
No 247
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.06 E-value=0.025 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..+++.|++|+|||+|+.++++.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46899999999999999999864
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.06 E-value=0.004 Score=56.92 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=22.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
+.-+.|.||+|+|||||++.++..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999999864
No 249
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.06 E-value=0.0073 Score=55.82 Aligned_cols=64 Identities=13% Similarity=0.227 Sum_probs=41.0
Q ss_pred CceEEEECCCCCcHH-HHHHHHHHHc--CCcEEEeecC---ccC--ChHH------------HHHHHHHccCCeEEEEcc
Q 011286 248 KRGYLLYGPPGTGKS-SLIAAMANYL--NFDVYDLELS---SVE--GNKD------------LRQILIATENKSILVVED 307 (489)
Q Consensus 248 ~rg~LL~GPpGtGKT-sla~aiA~~l--~~~~~~l~~s---~~~--~~~~------------L~~l~~~~~~~sIL~iDd 307 (489)
.+-+++|||.|+||| .|.+++.++. +..++.+... ... -.+. +..++.....-.+|+|||
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDE 99 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDE 99 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESS
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEEc
Confidence 345789999999999 8999998876 5677766533 100 0011 111222233456999999
Q ss_pred chhh
Q 011286 308 IDCC 311 (489)
Q Consensus 308 iD~~ 311 (489)
+.-+
T Consensus 100 aQFf 103 (195)
T 1w4r_A 100 GQFF 103 (195)
T ss_dssp GGGC
T ss_pred hhhh
Confidence 9977
No 250
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.04 E-value=0.01 Score=56.32 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=27.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeecC
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLELS 282 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s 282 (489)
.++++||+|+|||.++.+++..++..++.+-.+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999998887777666544
No 251
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.04 E-value=0.016 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l 272 (489)
-+++.|++|+|||+|+.++.+.-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 252
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.04 E-value=0.041 Score=47.59 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
-+++.|++|+|||+|+.++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999764
No 253
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.03 E-value=0.016 Score=61.58 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=25.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
|++...-++|.||||+|||+|++.+|...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56666679999999999999999998765
No 254
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.00 E-value=0.024 Score=52.99 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=30.8
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhC---CCCCceEEEECCCCCcHHHHH
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVG---KAWKRGYLLYGPPGTGKSSLI 265 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g---~~~~rg~LL~GPpGtGKTsla 265 (489)
...+|+++...+.+.+.+.+.- +..+..++... ....+.+++.+|+|+|||..+
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQ---YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTT---CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 3456888887777766654310 11111111110 112367999999999999853
No 255
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.00 E-value=0.018 Score=54.15 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=31.2
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhC---CCCCceEEEECCCCCcHHHHH
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVG---KAWKRGYLLYGPPGTGKSSLI 265 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g---~~~~rg~LL~GPpGtGKTsla 265 (489)
..+|+++...+.+.+.+.+.- +..+..++... ....+.+++.+|+|+|||..+
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYG---FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATF 84 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 357999988877776664310 11111111110 111356999999999999753
No 256
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.99 E-value=0.0038 Score=62.04 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=28.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
+-+++.||+|+|||+|+..+|..++..++..|.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 457899999999999999999999877766553
No 257
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.99 E-value=0.019 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 258
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.98 E-value=0.026 Score=55.72 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=31.8
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCC----CCCceEEEECCCCCcHHHHHHHHHH
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK----AWKRGYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~----~~~rg~LL~GPpGtGKTsla~aiA~ 270 (489)
.+|+++...+.+.+.+.+.- +..+..++...+ .-++.+++.+|+|+|||..+...+-
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKG---FEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 45777777776666654311 111111111111 1136899999999999987654443
No 259
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.96 E-value=0.02 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
--+++.|+||+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 358999999999999999888754
No 260
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.95 E-value=0.024 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..+++.|++|+|||+|+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 261
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.89 E-value=0.0045 Score=56.22 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
+-+.|.||+|+|||||++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998874
No 262
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.88 E-value=0.0038 Score=57.55 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=25.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC--CcEEE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN--FDVYD 278 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~--~~~~~ 278 (489)
+.-+.|.||+|+|||||++.++..++ ..++.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 34578999999999999999999987 44443
No 263
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.87 E-value=0.023 Score=51.30 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..-.+++.|++|+|||+|+.++++.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999875
No 264
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.87 E-value=0.0079 Score=52.45 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~ 270 (489)
-+++.|+||+|||+|+.++++
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999864
No 265
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.86 E-value=0.01 Score=51.63 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
.+++.|++|+|||+|+.++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 266
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.85 E-value=0.013 Score=51.75 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
.-+++.|++|+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 267
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.84 E-value=0.011 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
-.+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 268
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.82 E-value=0.011 Score=53.03 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.-+++.|++|+|||+|+.++.+.-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998743
No 269
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.82 E-value=0.006 Score=60.35 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHhC--CCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 220 FDMKKMIMDDLERFLKRKEFYKRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 220 ~~~K~~i~~~l~~~l~~~~~y~~~g--~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
+.+++.+.+.+...+........+. ...+.-+.|.||+|+||||+++.+|..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456666666666654321001122 2334568899999999999999999987
No 270
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.82 E-value=0.0057 Score=60.64 Aligned_cols=31 Identities=35% Similarity=0.569 Sum_probs=27.3
Q ss_pred hCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 243 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 243 ~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
+.++.+..+.|.||+|+|||||++.|+..+.
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 3567777899999999999999999999883
No 271
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.80 E-value=0.029 Score=52.47 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=30.2
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhC---CCCCceEEEECCCCCcHHHH
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVG---KAWKRGYLLYGPPGTGKSSL 264 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g---~~~~rg~LL~GPpGtGKTsl 264 (489)
.+.+|+++...+.+.+.+.+.- +..+..++... ....+.+++.+|+|+|||..
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAG---FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCV 77 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 3457888888777776664310 11111111111 11136799999999999976
No 272
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.79 E-value=0.0071 Score=53.95 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=24.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
++...-+.|.||.|+|||||+++|+..+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4445568899999999999999999988
No 273
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.79 E-value=0.022 Score=50.72 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..+++.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 274
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.78 E-value=0.005 Score=56.72 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=22.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
++-+.|.||+|+|||||++.++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999998764
No 275
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.76 E-value=0.017 Score=50.81 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
..+++.|++|+|||+|+.++.+.-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998653
No 276
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.76 E-value=0.0065 Score=55.78 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFD 275 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~ 275 (489)
|-++|.||+|+|||||++.+.....-.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 458999999999999999998886443
No 277
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.75 E-value=0.054 Score=54.00 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=31.8
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHh--cHHHHHHhCCCCCceEEEECCCCCcHHHHHH
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLK--RKEFYKRVGKAWKRGYLLYGPPGTGKSSLIA 266 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~--~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~ 266 (489)
.+|+++...+.+.+.+.+.--..+. ..+.+..+-...++.+++.+|+|+|||..+.
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHH
Confidence 5788888777777666441000000 0111122111234789999999999998654
No 278
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.70 E-value=0.017 Score=50.69 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
--+++.|+||+|||+|+.++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35899999999999999999753
No 279
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.69 E-value=0.028 Score=62.66 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=34.4
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHh--cHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHH
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLK--RKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~--~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
.+|+.+...+...+.+...-..+.. .......+ .....+++.||+|+|||+++..++..
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l--~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLY--QNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHH--HHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHH--hCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4688888777666555432222211 11111111 11346999999999999977766544
No 280
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.68 E-value=0.024 Score=50.67 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
.-+++.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999875
No 281
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.67 E-value=0.0058 Score=59.73 Aligned_cols=38 Identities=21% Similarity=0.111 Sum_probs=29.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeec
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLEL 281 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~ 281 (489)
|++...-++|.||||+|||+|+..+|..+ |..++.++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56667779999999999999999998876 445655443
No 282
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.67 E-value=0.0068 Score=56.02 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=23.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
..+.-+.|.||+|+|||||+++|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3455688999999999999999999885
No 283
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.66 E-value=0.0048 Score=58.66 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=25.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
+=|.||||+||||+++.+|..++++.++.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 55889999999999999999999887644
No 284
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.65 E-value=0.02 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l 272 (489)
.+++.|++|+|||||+.++++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
No 285
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.64 E-value=0.0094 Score=64.72 Aligned_cols=33 Identities=30% Similarity=0.536 Sum_probs=29.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~ 280 (489)
+.-++|.|+||+||||+++++|..+ |.+++.++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 4458899999999999999999999 99999886
No 286
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.63 E-value=0.0068 Score=56.75 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=23.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
+.+.-+.|.||+|+|||||++.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345568899999999999999999987
No 287
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.63 E-value=0.015 Score=50.70 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~ 270 (489)
.+++.|++|+|||+|+.++++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 288
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.62 E-value=0.08 Score=55.39 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=20.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
..++|+||||+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 358999999999999999887764
No 289
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.62 E-value=0.0069 Score=62.24 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=28.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
+.-+++.||+|+|||+|+..+|..++..++..|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 4567899999999999999999999877766543
No 290
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.58 E-value=0.0087 Score=55.49 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
++-+.|.||+|+|||||+++|+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998865
No 291
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.58 E-value=0.012 Score=61.22 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=27.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
++.+++.||||+||||++..+|..+ |..+..+++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3568999999999999999999877 355555544
No 292
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.57 E-value=0.018 Score=65.22 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=40.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc-----CCc----EEEe----------ecCcc---------CChHHHHHHHHHc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYL-----NFD----VYDL----------ELSSV---------EGNKDLRQILIAT 297 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l-----~~~----~~~l----------~~s~~---------~~~~~L~~l~~~~ 297 (489)
..+..++|.||.|+||||+.+.+|... +.. -..+ ...+. .....+..++..+
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a 750 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKA 750 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhc
Confidence 345568999999999999999987432 211 1111 11110 0112334445556
Q ss_pred cCCeEEEEccchhhh
Q 011286 298 ENKSILVVEDIDCCL 312 (489)
Q Consensus 298 ~~~sIL~iDdiD~~~ 312 (489)
..|++|++||.-.-.
T Consensus 751 ~~p~LlLLDEP~~Gl 765 (918)
T 3thx_B 751 TSQSLVILDELGRGT 765 (918)
T ss_dssp CTTCEEEEESTTTTS
T ss_pred cCCCEEEEeCCCCCC
Confidence 789999999998654
No 293
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.55 E-value=0.028 Score=52.24 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.2
Q ss_pred CceEEEECCCCCcHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLI 265 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla 265 (489)
.+.+++.+|+|+|||...
T Consensus 57 ~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 357999999999999743
No 294
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.51 E-value=0.026 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
.-+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999865
No 295
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.50 E-value=0.031 Score=62.51 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
++.++|.||.|+||||+.+.+|..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456899999999999999999875
No 296
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.48 E-value=0.045 Score=51.99 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=29.7
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhC---CCCCceEEEECCCCCcHHHHH
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVG---KAWKRGYLLYGPPGTGKSSLI 265 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g---~~~~rg~LL~GPpGtGKTsla 265 (489)
.+|+++...+.+.+.+.+.- +..+..++... ....+.+++.+|+|+|||..+
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLG---WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAF 97 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHh
Confidence 46888887777666553310 00111111110 112367999999999999753
No 297
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.47 E-value=0.03 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.-++|.|++|+|||||+.++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 468999999999999999998643
No 298
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.44 E-value=0.013 Score=58.05 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=30.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
|.++..-++|.|+||+|||+|+..+|... +.++..+++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 67777779999999999999999988654 4566666543
No 299
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.42 E-value=0.011 Score=58.71 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 222 MKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 222 ~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
+++.+.+.+...+...... .+....+.-+++.||+|+||||++..+|..+ +..+..+++
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 4455555555544322100 0112234568899999999999999999876 455555543
No 300
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.42 E-value=0.014 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l 272 (489)
-++|.|++|+|||+|+.++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 301
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.42 E-value=0.01 Score=57.43 Aligned_cols=27 Identities=41% Similarity=0.626 Sum_probs=23.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
....-++|.||+|+||||++++++..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 444568899999999999999999876
No 302
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.40 E-value=0.028 Score=50.41 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
.+++.|++|+|||+|+.++++.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 303
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=95.40 E-value=0.017 Score=44.87 Aligned_cols=46 Identities=7% Similarity=-0.134 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 390 SYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 390 ~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
|.|+.++|.+|++.++......-..++..++..+ +||+|||.+++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~ 47 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 47 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 6899999999999999865433334677777765 599999998874
No 304
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.39 E-value=0.0086 Score=60.73 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHhC--CCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 221 DMKKMIMDDLERFLKRKEFYKRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 221 ~~K~~i~~~l~~~l~~~~~y~~~g--~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.+++.+.+.|...+........+. ...+.-+.|.||.|+||||+++.||..+
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 455555555555554321001122 2334568899999999999999999987
No 305
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.37 E-value=0.028 Score=51.97 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.9
Q ss_pred ceEEEECCCCCcHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLI 265 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla 265 (489)
+.+++.+|+|+|||..+
T Consensus 42 ~~~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAY 58 (219)
T ss_dssp CCEEEECCSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 57999999999999853
No 306
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.36 E-value=0.013 Score=63.65 Aligned_cols=34 Identities=38% Similarity=0.382 Sum_probs=24.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeecC
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELS 282 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~s 282 (489)
..+++.||||||||+++..++..+ +..+..+..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 467999999999999888776654 3445544433
No 307
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.36 E-value=0.01 Score=55.80 Aligned_cols=29 Identities=38% Similarity=0.474 Sum_probs=24.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
.+.+.-+.|.||+|+|||||+++++..+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34556688999999999999999999875
No 308
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.36 E-value=0.013 Score=55.49 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=25.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC--CcEEEe
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLN--FDVYDL 279 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~--~~~~~l 279 (489)
.-+.|.||||+||||+++.+++.++ .+++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 4477889999999999999999996 455433
No 309
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.35 E-value=0.0037 Score=57.60 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
-+.|.||+|+||||+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3679999999999999999999853
No 310
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.32 E-value=0.015 Score=53.09 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=28.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCcEEEeecCcc
Q 011286 251 YLLYGPPGTGKSSLIAAMANYLNFDVYDLELSSV 284 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~s~~ 284 (489)
+|++|++|+|||++|..+|.. +.+++.+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999988 888888877553
No 311
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.32 E-value=0.0094 Score=56.32 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=27.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
.-+.+.|++|||||++++.+|..+|+++|+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 467899999999999999999999999976
No 312
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.32 E-value=0.0086 Score=63.12 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
+.-++|.||+|+|||||++.||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4458899999999999999999987
No 313
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.31 E-value=0.14 Score=50.04 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=31.6
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcH-----HHHHHhCCCCCceEEEECCCCCcHHHH
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRK-----EFYKRVGKAWKRGYLLYGPPGTGKSSL 264 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~-----~~y~~~g~~~~rg~LL~GPpGtGKTsl 264 (489)
..+|+++...+.+.+.+... -+..+ ..+..+-...++.+++++|+|||||..
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHH
Confidence 35799988888777666431 01111 111122122347899999999999975
No 314
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.31 E-value=0.03 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
.--+++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999876
No 315
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.29 E-value=0.023 Score=58.73 Aligned_cols=50 Identities=28% Similarity=0.316 Sum_probs=34.2
Q ss_pred CCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 210 PATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
+.+++++....+.+..+ ..+ + .....-+++.||+|+||||+.+++++.+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L-~~l---~----------~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNF-RRL---I----------KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHH-HHH---H----------TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHH-HHH---H----------HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 34677777766544322 222 1 12233478999999999999999999885
No 316
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.24 E-value=0.016 Score=56.97 Aligned_cols=29 Identities=28% Similarity=0.220 Sum_probs=24.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
..+.-+.+.||+|+|||||++.|+..++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 33455789999999999999999998853
No 317
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.24 E-value=0.032 Score=63.38 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=39.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH-----cCCcE----EE----------eecCcc--C-------ChHHHHHHHHHccC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANY-----LNFDV----YD----------LELSSV--E-------GNKDLRQILIATEN 299 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~-----l~~~~----~~----------l~~s~~--~-------~~~~L~~l~~~~~~ 299 (489)
+.-++|.||.|+||||+.+.+|.. .|..+ .. +...+. . .-..+..++..+..
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~ 741 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATK 741 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccC
Confidence 456899999999999999998532 23211 11 111110 0 01233445555678
Q ss_pred CeEEEEccchhhh
Q 011286 300 KSILVVEDIDCCL 312 (489)
Q Consensus 300 ~sIL~iDdiD~~~ 312 (489)
|++|++||.-.-.
T Consensus 742 ~sLlLLDEp~~Gl 754 (934)
T 3thx_A 742 DSLIIIDELGRGT 754 (934)
T ss_dssp TCEEEEESCSCSS
T ss_pred CcEEEEeCCCCCC
Confidence 9999999997543
No 318
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.23 E-value=0.024 Score=51.39 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999764
No 319
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.22 E-value=0.017 Score=51.90 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=20.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
--+++.|++|+|||+|+.++++..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999997654
No 320
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.20 E-value=0.03 Score=51.02 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
.-+++.|++|+|||+|+.++.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 35899999999999999999754
No 321
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.19 E-value=0.03 Score=50.75 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
...+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999999754
No 322
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.18 E-value=0.011 Score=54.38 Aligned_cols=23 Identities=43% Similarity=0.780 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l 272 (489)
-+.|.||+|+|||||++.||..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999987
No 323
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.18 E-value=0.057 Score=50.81 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=28.9
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhC---CCCCceEEEECCCCCcHHHHH
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVG---KAWKRGYLLYGPPGTGKSSLI 265 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g---~~~~rg~LL~GPpGtGKTsla 265 (489)
.+|+++...+.+.+.+.+. -+..+..++... ....+.+++.+|+|+|||...
T Consensus 29 ~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIARQ---NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp SSTTTTTCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHH
Confidence 4788877777666555331 011111111100 001357999999999999753
No 324
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.17 E-value=0.039 Score=49.41 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..+++.|++|+|||+|+.++.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999754
No 325
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.17 E-value=0.1 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
..-+++.||||||||+|++.||+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 4458999999999999999999865
No 326
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.15 E-value=0.016 Score=57.76 Aligned_cols=36 Identities=33% Similarity=0.495 Sum_probs=28.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
.++-+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35568899999999999999999876 5666666554
No 327
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.15 E-value=0.014 Score=59.41 Aligned_cols=29 Identities=41% Similarity=0.634 Sum_probs=24.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
...+..+++.||+|+||||+++++++.+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44455689999999999999999998763
No 328
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.13 E-value=0.085 Score=51.39 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=22.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEEEe
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVYDL 279 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~~l 279 (489)
+.+++.+|+|+|||..+...+-..+..++.+
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv 62 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVV 62 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEE
Confidence 5799999999999987665554444444433
No 329
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.11 E-value=0.016 Score=50.92 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..+++.|+||+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 330
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.10 E-value=0.14 Score=56.20 Aligned_cols=55 Identities=20% Similarity=0.351 Sum_probs=31.3
Q ss_pred CCcccccCCHHHHHHHHHH-HHHHHh-cHHHHHHhCCCCCceEEEECCCCCcHHHHHH
Q 011286 211 ATFDTLAMDFDMKKMIMDD-LERFLK-RKEFYKRVGKAWKRGYLLYGPPGTGKSSLIA 266 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~-l~~~l~-~~~~y~~~g~~~~rg~LL~GPpGtGKTsla~ 266 (489)
.+|+++...+.+++.+.+. +..+.. ..+.+.. +..-.+.+++.||+|+|||+.+.
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKK-GLLEGNRLLLTSPTGSGKTLIAE 64 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHT-TTTTTCCEEEECCTTSCHHHHHH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHH-HhcCCCcEEEEcCCCCcHHHHHH
Confidence 4678887777666544321 000000 1111211 22336789999999999999873
No 331
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.10 E-value=0.013 Score=51.10 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~ 270 (489)
-+++.|+||+|||+|+.++++
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999963
No 332
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.10 E-value=0.013 Score=55.55 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=24.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFD 275 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~ 275 (489)
+.-+-|.||+|+|||||++.++..+|..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3447799999999999999999988754
No 333
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.10 E-value=0.023 Score=50.03 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
--+++.|+||+|||+|+.++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999753
No 334
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.09 E-value=0.022 Score=57.03 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
+.+.-+.|.||+|+||||+++.||..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345568899999999999999999987
No 335
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.08 E-value=0.019 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
-.+++.|++|+|||+|+.++++.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 336
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.01 E-value=0.017 Score=51.38 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
--+++.|++|+|||+|+.++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 337
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.01 E-value=0.046 Score=55.05 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=30.8
Q ss_pred CCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCCC---CCceEEEECCCCCcHHHHHH
Q 011286 209 HPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGKA---WKRGYLLYGPPGTGKSSLIA 266 (489)
Q Consensus 209 ~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~~---~~rg~LL~GPpGtGKTsla~ 266 (489)
+..+|+++...+.+.+.+.+.- +..+..++...++ ..+.+++.+|+|+|||..+.
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~ 76 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAG---FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFV 76 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHH
Confidence 3457888888877777665310 0111111111000 13569999999999997543
No 338
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.96 E-value=0.012 Score=53.32 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=23.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDV 276 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~ 276 (489)
.+|+||.||+|+|||+++.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 579999999999999999999874 4443
No 339
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.95 E-value=0.048 Score=49.24 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~ 270 (489)
.--+++.|++|+|||+|+.+++.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999864
No 340
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.94 E-value=0.0057 Score=60.12 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=25.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcC---CcEEEeecCccC
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLN---FDVYDLELSSVE 285 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~---~~~~~l~~s~~~ 285 (489)
-+.|.||+|+||||+++.++..++ ..+..+++..+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 578999999999999999999876 445555555553
No 341
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.94 E-value=0.018 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
--+++.|++|+|||+|+.++++.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999854
No 342
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.027 Score=50.51 Aligned_cols=27 Identities=22% Similarity=0.538 Sum_probs=22.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.....+++.|++|+|||||+.++++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344579999999999999999998753
No 343
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.92 E-value=0.031 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
-.+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46899999999999999999873
No 344
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.92 E-value=0.025 Score=51.34 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.-++|.|++|+|||+|+.++.+.-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 458999999999999999998753
No 345
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.91 E-value=0.26 Score=47.05 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.2
Q ss_pred ceEEEECCCCCcHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIA 266 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~ 266 (489)
+.+++.+|+|+|||..+.
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 579999999999997543
No 346
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.91 E-value=0.019 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999875
No 347
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.90 E-value=0.022 Score=60.56 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=26.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~ 280 (489)
+.-++|.|+||+|||++++.+|.++ +.+...++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 4568999999999999999999998 44444443
No 348
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.90 E-value=0.023 Score=59.04 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=30.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeec
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLEL 281 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~ 281 (489)
|.++..-+++.|+||+|||+|+..+|... +.++..+++
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56666678999999999999999887654 556776655
No 349
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.90 E-value=0.017 Score=52.30 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=22.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
....-+.|.||+|+|||||+..++..+
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 334578899999999999999999875
No 350
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.87 E-value=0.025 Score=56.36 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=22.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
.-+.|.||+||||||++++|+..++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3577999999999999999999876
No 351
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.85 E-value=0.046 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
--++|.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999853
No 352
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.85 E-value=0.0083 Score=56.32 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=16.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHH-HHcC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMA-NYLN 273 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA-~~l~ 273 (489)
.+.-+.|.||+|+||||+++.++ ..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34558899999999999999999 8763
No 353
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.82 E-value=0.023 Score=63.61 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=20.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.-+++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357999999999999888777654
No 354
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.81 E-value=0.028 Score=49.55 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
-.+++.|++|+|||+|+.++.+.-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358999999999999999998643
No 355
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.80 E-value=0.1 Score=52.04 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=31.1
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhC---CCCCceEEEECCCCCcHHHHHH
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVG---KAWKRGYLLYGPPGTGKSSLIA 266 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g---~~~~rg~LL~GPpGtGKTsla~ 266 (489)
.+|+++...+.+.+.+.+. -+..+..|+... ....+.+++.+|+|+|||..+.
T Consensus 8 ~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 63 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC---GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 63 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH---SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHH
Confidence 4688888888777666441 011111122111 1124679999999999998654
No 356
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.79 E-value=0.065 Score=47.81 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=20.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~ 270 (489)
...+++.|++|+|||+|+.++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999984
No 357
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.79 E-value=0.11 Score=57.06 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=16.3
Q ss_pred CceEEEECCCCCcHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLI 265 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla 265 (489)
.+.+++.||+|+|||..+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 578999999999999876
No 358
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.78 E-value=0.037 Score=49.42 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..-+++.|+||+|||+|+.++++.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 359
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.73 E-value=0.02 Score=56.66 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
+.-+.|.||+|+||||+++.+|..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999999887
No 360
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.72 E-value=0.027 Score=50.84 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~ 270 (489)
.+++.|++|+|||+|+.++.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999864
No 361
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.71 E-value=0.032 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
-++|.|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4899999999999999988753
No 362
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.70 E-value=0.035 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
..-+++.|++|+|||+|+.++++..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998643
No 363
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.67 E-value=0.019 Score=56.73 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
+.-+.|.||+|+|||||++.|+..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34577999999999999999999876
No 364
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.62 E-value=0.053 Score=60.29 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
+..++|.||.|+||||+.+.+|...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4568999999999999999998753
No 365
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.56 E-value=0.022 Score=53.34 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=28.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCcEEEeec
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNFDVYDLEL 281 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~~~~~l~~ 281 (489)
.+-|+|..|||||++++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 577999999999999999998 9999998875
No 366
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.56 E-value=0.024 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 367
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.56 E-value=0.022 Score=61.36 Aligned_cols=33 Identities=27% Similarity=0.155 Sum_probs=28.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC----CcEEEeec
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLN----FDVYDLEL 281 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~----~~~~~l~~ 281 (489)
.-++|.|+||+||||++++++..++ .+++.++.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 4578999999999999999999986 77777763
No 368
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.56 E-value=0.12 Score=51.62 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=37.0
Q ss_pred CceEcccCCCCCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCC---CCCceEEEECCCCCcHHHHH-HHHHHH
Q 011286 201 IWQSVNLDHPATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK---AWKRGYLLYGPPGTGKSSLI-AAMANY 271 (489)
Q Consensus 201 ~w~~~~~~~p~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~---~~~rg~LL~GPpGtGKTsla-~aiA~~ 271 (489)
.|....-....+|+++...+.+.+.+...- +..+..++.... ...+.+++.+|+|+|||..+ .++...
T Consensus 11 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~ 82 (394)
T 1fuu_A 11 QIQTNYDKVVYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 82 (394)
T ss_dssp CEEESSCCCCCSSGGGCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHH
T ss_pred chhhhcccccCChhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHH
Confidence 344433333457999888887777664421 111111111110 01356999999999999763 333443
No 369
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.55 E-value=0.024 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..+++.|++|+|||+|+.++.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 370
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.54 E-value=0.021 Score=51.12 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
-.+|+||.|+|||+++.||+-.++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5689999999999999999988753
No 371
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.53 E-value=0.15 Score=51.36 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=31.3
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCC---CCCceEEEECCCCCcHHHHHH
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK---AWKRGYLLYGPPGTGKSSLIA 266 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~---~~~rg~LL~GPpGtGKTsla~ 266 (489)
.+|+++...+.+.+.+.+.- +..+..++...+ -..+.+++.+|+|+|||..+.
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~ 92 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYG---FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFS 92 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHH
Confidence 47999888887777664320 111111111111 113579999999999996544
No 372
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.53 E-value=0.024 Score=56.28 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
.+.-+.|.||+|+|||||++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 344577999999999999999999874
No 373
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.53 E-value=0.015 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=9.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
.-+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998753
No 374
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.47 E-value=0.032 Score=56.06 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=30.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
|..+..-++|.|+||+|||+|+..+|... +.++..+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 56666679999999999999999988764 6676666543
No 375
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.47 E-value=0.02 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
.-+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 376
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.45 E-value=0.025 Score=53.45 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
.-+.|.|++|+||||+++.+|..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999999994
No 377
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.43 E-value=0.16 Score=50.97 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~ 270 (489)
-+.+.|++|+|||||+.++.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 688999999999999999998
No 378
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.40 E-value=0.04 Score=49.69 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=25.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~ 280 (489)
.-+.+.|++|+|||+++..++..+ ++.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 367899999999999999999876 45555544
No 379
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.40 E-value=0.025 Score=59.92 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=27.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
++.+++.|+||+||||++..+|..+ |..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4568999999999999999999876 666666655
No 380
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.34 E-value=0.034 Score=51.94 Aligned_cols=31 Identities=32% Similarity=0.290 Sum_probs=25.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCcEEEe
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL---NFDVYDL 279 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l 279 (489)
.-+.|.||+|+||||+++.++..+ +++++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 346788999999999999999988 4566544
No 381
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.33 E-value=0.097 Score=52.72 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=32.4
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhC---CCCCceEEEECCCCCcHHHHHH-HHHHH
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVG---KAWKRGYLLYGPPGTGKSSLIA-AMANY 271 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g---~~~~rg~LL~GPpGtGKTsla~-aiA~~ 271 (489)
.+|+++...+.+.+.+.+.- +..+..++... ....+.+++.+|+|+|||..+. ++...
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~ 101 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYG---FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 101 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHcC---CCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHH
Confidence 47888888877776664310 11111111110 0113569999999999998643 34443
No 382
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.32 E-value=0.16 Score=50.92 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=31.8
Q ss_pred CCCcccccCCHHHHHHHHHHHH-HHHh-cHHHHHHhCCCCCceEEEECCCCCcHHHHH
Q 011286 210 PATFDTLAMDFDMKKMIMDDLE-RFLK-RKEFYKRVGKAWKRGYLLYGPPGTGKSSLI 265 (489)
Q Consensus 210 p~~fd~l~~~~~~K~~i~~~l~-~~l~-~~~~y~~~g~~~~rg~LL~GPpGtGKTsla 265 (489)
..+|+++...+.+.+.+.+.-- .+.. ..+.+..+-...++.+++.+|+|+|||..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 3478888888877776644110 0000 011111111113468999999999999864
No 383
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.31 E-value=0.096 Score=61.84 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=25.2
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
++++.-+.+.||+|+|||||+++|.+++.
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 45566789999999999999999998874
No 384
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.031 Score=62.61 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=24.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeecCc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSS 283 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~s~ 283 (489)
.-+|+.||||||||+++..++..+ +..+..+..+.
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn 414 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSN 414 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcH
Confidence 357999999999999877665543 45666555443
No 385
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.26 E-value=0.011 Score=56.78 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=24.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc-CCcEE
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL-NFDVY 277 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l-~~~~~ 277 (489)
.-+.|.|++|+||||+++.+|..+ +..++
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 457889999999999999999998 44333
No 386
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.23 E-value=0.024 Score=51.46 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l 272 (489)
-+.|.||+|+|||||++++++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999999863
No 387
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.23 E-value=0.03 Score=52.93 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=22.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc-------CCcEEEe
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL-------NFDVYDL 279 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l-------~~~~~~l 279 (489)
-+.|.||+|+||||+++.+++.+ +.+++..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 46788999999999999999988 6666544
No 388
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.22 E-value=0.017 Score=61.41 Aligned_cols=62 Identities=19% Similarity=0.404 Sum_probs=40.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC--cEEEeecCc-cC-----------------ChHHHHHHHHHc--cCCeEEEE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELSS-VE-----------------GNKDLRQILIAT--ENKSILVV 305 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~--~~~~l~~s~-~~-----------------~~~~L~~l~~~~--~~~sIL~i 305 (489)
+.++++.||+|+||||+++++++.+.. .++.++-.. +. ..-.+..++... .+|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 457999999999999999999998843 344443221 10 011233343332 36889999
Q ss_pred ccch
Q 011286 306 EDID 309 (489)
Q Consensus 306 DdiD 309 (489)
.|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9874
No 389
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.19 E-value=0.017 Score=55.00 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=23.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
+...-+.|.||.|+|||||+++|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445568999999999999999999876
No 390
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.17 E-value=0.014 Score=61.13 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
+.-++|.|+||+|||++++.+|..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45689999999999999999999875
No 391
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.16 E-value=0.027 Score=48.55 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
.+++.|++|+|||+|+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 392
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.10 E-value=0.024 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l 272 (489)
-+.|.||+|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 393
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.07 E-value=0.038 Score=57.59 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=30.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
|..+..-+++.|+||+|||+|+..+|... |.++..+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 56666669999999999999999887665 6677766554
No 394
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.07 E-value=0.026 Score=56.97 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFD 275 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~ 275 (489)
..-+.|.||+|+|||||++.||..+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999997654
No 395
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.07 E-value=0.027 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
-.+++.|++|+|||||+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 396
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.07 E-value=0.03 Score=58.12 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=29.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeecCc
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELSS 283 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~s~ 283 (489)
.++.+++.|++|+||||++..+|..+ |..+..+++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 35678899999999999999999776 67777666653
No 397
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.07 E-value=0.048 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..+.|.|+||+|||||+.++++.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999865
No 398
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.06 E-value=0.023 Score=53.92 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=24.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
....-+.|.||.|+|||||+++|+..+..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 34556889999999999999999987643
No 399
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.04 E-value=0.18 Score=44.70 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
.-+++.|++|+|||||+.++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 400
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.04 E-value=0.035 Score=50.45 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~ 270 (489)
.-+++.|+||+|||+|+.++++
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999863
No 401
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.01 E-value=0.036 Score=58.46 Aligned_cols=39 Identities=15% Similarity=-0.014 Sum_probs=30.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc----CCcEEEeecC
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----NFDVYDLELS 282 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~aiA~~l----~~~~~~l~~s 282 (489)
|.+...-++|.|+||+|||+|+..+|... +.++..+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 45566668999999999999999888765 4567766553
No 402
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=94.00 E-value=0.23 Score=51.58 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=33.5
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhc-----HHHHHHhCCCCCceEEEECCCCCcHHHHH-HHHHHH
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKR-----KEFYKRVGKAWKRGYLLYGPPGTGKSSLI-AAMANY 271 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~-----~~~y~~~g~~~~rg~LL~GPpGtGKTsla-~aiA~~ 271 (489)
.+|+.+...+.+.+.+.+. -+.. ...+..+-...++.+|+.||+|+|||... .++...
T Consensus 92 ~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~ 155 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTT
T ss_pred CCHHHcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHH
Confidence 4788888888776665431 0001 11111111123478999999999999763 344433
No 403
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.00 E-value=0.022 Score=53.02 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..-+.|.||.|+|||||+++|+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999986
No 404
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.99 E-value=0.058 Score=47.96 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=20.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..+++.|++|+|||+|+.++.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999854
No 405
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.99 E-value=0.05 Score=54.74 Aligned_cols=25 Identities=40% Similarity=0.600 Sum_probs=21.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
..-+.|.||||+|||||+.+++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999865
No 406
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.91 E-value=0.017 Score=54.32 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=23.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
...-+.|.||.|+|||||+++|+..+..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 56 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDAP 56 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3446889999999999999999987643
No 407
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.90 E-value=0.025 Score=53.88 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=22.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
.-+.|.||.|+|||||+++|+..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999999874
No 408
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=93.87 E-value=0.052 Score=43.20 Aligned_cols=48 Identities=10% Similarity=-0.077 Sum_probs=36.7
Q ss_pred EeCCCCHHHHHHHHHHhhCcCCCCChHhHHHHHhcc-CCCHHHHHHHHh
Q 011286 388 HMSYCTPCGFKMLASNYLGITEHPLFLEVEELIEKV-EVTPADVAEQLM 435 (489)
Q Consensus 388 ~~~~p~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~spa~i~~~l~ 435 (489)
+-++|+.++|.+|++.++.........++..++..+ +||+|||.+++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~ 55 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 55 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 457899999999999999764333234566777654 699999999874
No 409
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.87 E-value=0.072 Score=61.14 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.7
Q ss_pred CceEEEECCCCCcHHHHHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMA 269 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA 269 (489)
++.++|.||.|+||||+.+.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4678999999999999999984
No 410
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.86 E-value=0.036 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
--+++.|++|+|||+|+.++.+.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
No 411
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.83 E-value=0.064 Score=55.52 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=27.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
+..+++.||+|+||||++..+|..+ +..+..+++
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 4568888999999999999999887 556665554
No 412
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.83 E-value=0.024 Score=54.72 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=24.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
....-+.|.||.|+|||||+++|+..+..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 33456889999999999999999998754
No 413
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.83 E-value=0.044 Score=51.42 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=25.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~~~~ 277 (489)
.-+.|.||+|+||||+++.+++.++.++.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 35788899999999999999999987543
No 414
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.80 E-value=0.022 Score=54.31 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=23.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
+...-+.|.||.|+|||||+++|+..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4455688999999999999999998763
No 415
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.78 E-value=0.052 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
--+++.|++|+|||+|++.+.+.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 459999999999999999887643
No 416
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.72 E-value=0.033 Score=51.28 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~ 270 (489)
--+++.|++|+|||+|+.++.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3589999999999999999975
No 417
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.72 E-value=0.031 Score=54.24 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcC
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
.+.|.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999999874
No 418
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.68 E-value=0.024 Score=53.58 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=23.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
+...-+.|.||.|+|||||.++|+..+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3345688999999999999999999874
No 419
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.65 E-value=0.024 Score=54.64 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=24.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
+...-+.|.||.|+|||||+++|+..+.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4455689999999999999999998764
No 420
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.65 E-value=0.025 Score=54.75 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=24.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
....-+.|.||.|+|||||+++|+..+..
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 33456889999999999999999998753
No 421
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.63 E-value=0.098 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
.-+.|.|+||+|||||..++++.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 35889999999999999999863
No 422
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.63 E-value=0.035 Score=48.70 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
-+.|.|+||+|||||+.++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999863
No 423
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.63 E-value=0.039 Score=48.02 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
--+++.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999865
No 424
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.63 E-value=0.024 Score=53.15 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=23.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
...-+.|.||.|+|||||.++|+..+..
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3446889999999999999999987643
No 425
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.61 E-value=0.033 Score=53.93 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=23.1
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
....-+.|.||.|+|||||+++|+..+
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999999964
No 426
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.60 E-value=0.025 Score=54.93 Aligned_cols=29 Identities=31% Similarity=0.361 Sum_probs=24.4
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
+...-+.|.||.|+|||||+++|+..+..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 44556889999999999999999998743
No 427
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.59 E-value=0.05 Score=57.62 Aligned_cols=26 Identities=12% Similarity=0.002 Sum_probs=23.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
..+.|.|++||||||+++++|..|+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999985
No 428
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.59 E-value=0.039 Score=48.50 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
..+++.|++|+|||+|+.++.+.-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998643
No 429
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.58 E-value=0.024 Score=54.46 Aligned_cols=28 Identities=36% Similarity=0.593 Sum_probs=23.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
...-+.|.||.|+|||||+++|+..+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3446889999999999999999988743
No 430
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.56 E-value=0.042 Score=54.09 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=28.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
+.-+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4567889999999999999999877 6666666554
No 431
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.56 E-value=0.055 Score=54.43 Aligned_cols=33 Identities=33% Similarity=0.380 Sum_probs=26.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEee
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLE 280 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~ 280 (489)
..-+.|.|+||+|||||+.+++..+ +..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3468899999999999999999886 55554443
No 432
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.54 E-value=0.035 Score=48.20 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..+++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999854
No 433
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.53 E-value=0.032 Score=49.95 Aligned_cols=21 Identities=24% Similarity=0.626 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~ 270 (489)
-++|.|+||+|||||+..+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999986
No 434
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.42 E-value=0.024 Score=54.27 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=24.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
+...-+.|.||.|+|||||+++|+..+..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 33456889999999999999999998743
No 435
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.41 E-value=0.039 Score=48.42 Aligned_cols=23 Identities=43% Similarity=0.522 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l 272 (489)
-.+++||.|+|||+++.||+-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998755
No 436
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.41 E-value=0.079 Score=50.77 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
.+.|.|+||+|||||+.++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999999865
No 437
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.40 E-value=0.024 Score=55.18 Aligned_cols=27 Identities=26% Similarity=0.355 Sum_probs=23.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
...-+.|.||.|+|||||+++|+..+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 344588999999999999999998774
No 438
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.40 E-value=0.031 Score=53.46 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
...-+.|.||.|+|||||+++|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999999996
No 439
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.39 E-value=0.032 Score=56.46 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=23.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
.+..++|.||+|+|||||+++|+..+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 356799999999999999999999874
No 440
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.39 E-value=0.033 Score=53.61 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=23.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
....-+.|.||.|+|||||+++|+..+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3345688999999999999999998774
No 441
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.37 E-value=0.025 Score=54.26 Aligned_cols=28 Identities=39% Similarity=0.431 Sum_probs=23.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
.+.-+.|.||.|+|||||.++|+..+..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3445889999999999999999998754
No 442
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.33 E-value=0.037 Score=56.02 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
...-+.|.||+|||||||.++||...
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34457899999999999999999976
No 443
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.31 E-value=0.046 Score=51.97 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.-+.|.||+|+||||+++.++..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999887
No 444
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.29 E-value=0.029 Score=53.33 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
..-+.|.||.|+|||||.++|+..+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 445889999999999999999997753
No 445
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.28 E-value=0.032 Score=59.74 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=23.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
+..+.|.||+|+|||||+++||..++
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 34588999999999999999999985
No 446
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.28 E-value=0.026 Score=50.90 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
..+.|.||+|+|||||++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999999874
No 447
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.25 E-value=0.039 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
.-++|.|++|+|||||+.++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999873
No 448
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.25 E-value=0.048 Score=47.48 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
...+++.|++|+|||+|+.++.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999763
No 449
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.20 E-value=0.045 Score=55.45 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=22.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
..-+.|.||+|||||||.++||....
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 44578999999999999999998763
No 450
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.19 E-value=0.032 Score=55.79 Aligned_cols=63 Identities=14% Similarity=0.339 Sum_probs=39.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC--cEEEeecCc-c-----------C--ChHHHHHHHHHc--cCCeEEEEccch
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNF--DVYDLELSS-V-----------E--GNKDLRQILIAT--ENKSILVVEDID 309 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~--~~~~l~~s~-~-----------~--~~~~L~~l~~~~--~~~sIL~iDdiD 309 (489)
+..+++.||+|+|||||+++|+..+.. ..+.++... + . +....+..+..+ .+|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 457999999999999999999998742 233333211 0 0 112223333322 468888888876
Q ss_pred h
Q 011286 310 C 310 (489)
Q Consensus 310 ~ 310 (489)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 3
No 451
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.18 E-value=0.035 Score=53.65 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=23.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
....-+.|.||.|+|||||+++|+..+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3445688999999999999999998764
No 452
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.14 E-value=0.046 Score=55.34 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
...-+.|.||+|||||||.++||....
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 344578999999999999999998763
No 453
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.14 E-value=0.1 Score=47.97 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=22.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
...+++.|++|+|||||+.+++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999999998864
No 454
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.14 E-value=0.057 Score=47.37 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~ 270 (489)
..-+++.|++|+|||+|+.++.+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999999976
No 455
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.13 E-value=0.032 Score=54.39 Aligned_cols=27 Identities=30% Similarity=0.609 Sum_probs=23.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
..-+.|.||.|+|||||+++|+..+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 445889999999999999999998743
No 456
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.10 E-value=0.048 Score=55.64 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
...-+.|.||+|||||||.++||....
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 344578999999999999999999873
No 457
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.09 E-value=0.039 Score=58.64 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=28.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHH--HHHHc--CCcEEEeecC
Q 011286 244 GKAWKRGYLLYGPPGTGKSSLIAA--MANYL--NFDVYDLELS 282 (489)
Q Consensus 244 g~~~~rg~LL~GPpGtGKTsla~a--iA~~l--~~~~~~l~~s 282 (489)
+++....++|.||+|+|||+|++. ++... +...+.++..
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 356667799999999999999999 45544 3344555443
No 458
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.09 E-value=0.048 Score=55.47 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
...-+.|.||+|||||||.++||....
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 344578999999999999999998763
No 459
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.05 E-value=0.029 Score=53.85 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
.+.-+.|.||.|+|||||.++|+..+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344688999999999999999998763
No 460
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.05 E-value=0.089 Score=49.78 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=26.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc--CCcEEEeec
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL--NFDVYDLEL 281 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l--~~~~~~l~~ 281 (489)
..+++.|++|+||||++..+|..+ +..+..+++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 457889999999999999999876 566655543
No 461
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.00 E-value=0.45 Score=49.68 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=17.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~ 270 (489)
+.+++.+|+|+|||..+...+-
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~ 41 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICE 41 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHH
Confidence 5799999999999987655443
No 462
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.97 E-value=0.043 Score=55.46 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
..-+.|.||+|||||||.++||..+.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 44578999999999999999998763
No 463
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.96 E-value=0.064 Score=53.69 Aligned_cols=27 Identities=33% Similarity=0.446 Sum_probs=22.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
....-+.|.||||+|||||+++++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 334457899999999999999999876
No 464
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.95 E-value=0.039 Score=53.43 Aligned_cols=27 Identities=33% Similarity=0.590 Sum_probs=23.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
...-+.|.||.|+|||||+++|+..+.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 345688999999999999999998774
No 465
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.93 E-value=0.34 Score=49.77 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=29.9
Q ss_pred CCcccccCCHHHHHHHHHHHHHHHhcHHHHHHhCC---CCCceEEEECCCCCcHHHH
Q 011286 211 ATFDTLAMDFDMKKMIMDDLERFLKRKEFYKRVGK---AWKRGYLLYGPPGTGKSSL 264 (489)
Q Consensus 211 ~~fd~l~~~~~~K~~i~~~l~~~l~~~~~y~~~g~---~~~rg~LL~GPpGtGKTsl 264 (489)
.+|+++...+.+.+.+.+. -+..+..++...+ ...+.+++.+|+|+|||..
T Consensus 56 ~~f~~~~l~~~l~~~l~~~---g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNKS---GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCGGGSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CChhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 4788888777776665331 0111111111111 1246799999999999983
No 466
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.91 E-value=0.073 Score=53.57 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=26.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEEE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVYD 278 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~~ 278 (489)
..-+.|.||+|+|||+|++.|++....+...
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~ 101 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASADIIV 101 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCSEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCEEE
Confidence 3458899999999999999999998766543
No 467
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.91 E-value=0.047 Score=64.52 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=24.3
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
++++.-+-+.||+|+|||||++++.+.+
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 4555668999999999999999999876
No 468
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.90 E-value=0.15 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l 272 (489)
-.++.||||||||+|+..||+..
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHH
Confidence 48999999999999999999864
No 469
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.88 E-value=0.041 Score=55.44 Aligned_cols=27 Identities=22% Similarity=0.523 Sum_probs=23.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
...-+.|.||+|||||||.++||....
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 344578999999999999999998773
No 470
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.82 E-value=0.052 Score=48.41 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
--+++.|++|+|||+|+.++++.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999875
No 471
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.76 E-value=0.018 Score=52.97 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~ 270 (489)
--+++.|++|+|||+|+.++++
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999874
No 472
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.75 E-value=0.055 Score=50.59 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 011286 250 GYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~l 272 (489)
-+.|.|++|+||||+++.++..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47788999999999999999988
No 473
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.73 E-value=0.061 Score=48.07 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
..+++.|++|+|||+|+.++++.-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998653
No 474
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.72 E-value=0.056 Score=47.40 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~ 270 (489)
--+++.|++|+|||+|+.++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999864
No 475
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.71 E-value=0.062 Score=47.42 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
.+++.|++|+|||+|+.++.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 476
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.71 E-value=0.049 Score=55.41 Aligned_cols=26 Identities=27% Similarity=0.485 Sum_probs=22.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLN 273 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~ 273 (489)
..-+.|.||+|||||||.++||..+.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 44578999999999999999998763
No 477
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.69 E-value=0.04 Score=50.84 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHH-HHHH
Q 011286 250 GYLLYGPPGTGKSSLIAA-MANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~a-iA~~ 271 (489)
-+++.|++|+|||+|+.+ +.+.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 589999999999999998 5444
No 478
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.64 E-value=0.048 Score=48.40 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
.-+.|.|+||+|||||+.++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999875
No 479
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.63 E-value=0.041 Score=53.16 Aligned_cols=25 Identities=32% Similarity=0.713 Sum_probs=22.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
..-+.|.||.|+|||||.++|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999999876
No 480
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.63 E-value=0.077 Score=49.97 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCC
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLNF 274 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~~ 274 (489)
.-+.|.|++|+||||+++.+++.++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44678899999999999999998754
No 481
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.61 E-value=0.095 Score=54.45 Aligned_cols=30 Identities=37% Similarity=0.515 Sum_probs=25.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCcEE
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYLNFDVY 277 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l~~~~~ 277 (489)
..-+.|.||+|||||+|++.||+....+.-
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 445889999999999999999999876543
No 482
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.57 E-value=0.067 Score=47.11 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
.-.+++.|++|+|||+|+.++.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 483
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=92.56 E-value=0.25 Score=54.09 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.5
Q ss_pred CceEEEECCCCCcHHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIA 266 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~ 266 (489)
.+.+++.||+|+|||..+.
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 4689999999999999773
No 484
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.53 E-value=0.12 Score=50.71 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=26.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeec
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLEL 281 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~ 281 (489)
++.+.+.||+|+||||++..+|..+ +..+..+++
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4567788999999999999999876 455655554
No 485
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.50 E-value=0.04 Score=54.07 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.3
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
+.+.-+.|.||.|+|||||+++|+..+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344568899999999999999999876
No 486
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.50 E-value=0.069 Score=47.88 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
-+++.|++|+|||+|+.++.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999998864
No 487
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.48 E-value=0.13 Score=52.23 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=28.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCcEEEeecC
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANYL---NFDVYDLELS 282 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~l---~~~~~~l~~s 282 (489)
..++++.||+|+|||++++.++..+ +..++.+|..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4578999999999999999888764 5666666653
No 488
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.47 E-value=0.063 Score=48.01 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=20.9
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..-+++.|++|+|||||+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999754
No 489
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.46 E-value=0.11 Score=48.16 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=24.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHc--CCcEEEe
Q 011286 251 YLLYGPPGTGKSSLIAAMANYL--NFDVYDL 279 (489)
Q Consensus 251 ~LL~GPpGtGKTsla~aiA~~l--~~~~~~l 279 (489)
+.|-|+.|+||||+++.++..+ +.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 6688999999999999999998 5555543
No 490
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.45 E-value=0.061 Score=48.44 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMAN 270 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~ 270 (489)
.-+++.|+||+|||+|+.++++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999987
No 491
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.42 E-value=0.034 Score=50.62 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=21.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHH
Q 011286 246 AWKRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 246 ~~~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
....-+.|.||+|+|||||++++++.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33445899999999999999998754
No 492
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.42 E-value=0.054 Score=47.73 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
--+++.|+||+|||+|+..+++.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999874
No 493
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.41 E-value=0.33 Score=51.02 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=41.9
Q ss_pred eEEEECCCCCcHHHH-HHHHHHHcCCcEEEeecCccCChHHHHHHHHHc-----cCCeEEEEccchhhh
Q 011286 250 GYLLYGPPGTGKSSL-IAAMANYLNFDVYDLELSSVEGNKDLRQILIAT-----ENKSILVVEDIDCCL 312 (489)
Q Consensus 250 g~LL~GPpGtGKTsl-a~aiA~~l~~~~~~l~~s~~~~~~~L~~l~~~~-----~~~sIL~iDdiD~~~ 312 (489)
-.++.|++|||||+| ...|++..+.+++.+=+.--+...++..+.... -.++|+|.--.|...
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~ 232 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPA 232 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCH
T ss_pred EEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCH
Confidence 389999999999999 569999998886544222222344444444333 246888887666543
No 494
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.41 E-value=0.041 Score=55.57 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=22.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 247 WKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 247 ~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
...-+.|.||+|||||||.++||...
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34457899999999999999999876
No 495
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.38 E-value=0.074 Score=47.69 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
-++|.|++|+|||+|+..+++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999888764
No 496
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.35 E-value=0.074 Score=48.06 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
.-+++.|++|+|||+|+.++.+.-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 497
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.32 E-value=0.058 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 011286 250 GYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 250 g~LL~GPpGtGKTsla~aiA~~ 271 (489)
-+++.|++|+|||||+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999864
No 498
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.29 E-value=0.062 Score=56.23 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.1
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc
Q 011286 245 KAWKRGYLLYGPPGTGKSSLIAAMANYL 272 (489)
Q Consensus 245 ~~~~rg~LL~GPpGtGKTsla~aiA~~l 272 (489)
+....-+.|.||.|+|||||++.||+.+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4445568999999999999999999976
No 499
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.29 E-value=0.11 Score=55.50 Aligned_cols=32 Identities=31% Similarity=0.335 Sum_probs=26.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC---CcEEEee
Q 011286 249 RGYLLYGPPGTGKSSLIAAMANYLN---FDVYDLE 280 (489)
Q Consensus 249 rg~LL~GPpGtGKTsla~aiA~~l~---~~~~~l~ 280 (489)
.-++|.|+||+||||++++++..++ .+++.++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 4578999999999999999999874 4555554
No 500
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.23 E-value=0.076 Score=48.20 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 011286 248 KRGYLLYGPPGTGKSSLIAAMANY 271 (489)
Q Consensus 248 ~rg~LL~GPpGtGKTsla~aiA~~ 271 (489)
..-+++.|+||+|||+|+.++++.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999854
Done!