BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011288
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DJ2|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ2|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 443
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/436 (87%), Positives = 410/436 (94%)
Query: 54 ANELPSQIESLSQVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGK 113
A E +I SLSQVSGVLG QWGDEGKGKLVDILA+HFDIVARCQGGANAGHTIYN+EGK
Sbjct: 8 ATESLGRIGSLSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGK 67
Query: 114 KFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFD 173
KFALHLVPSGILNEDT CVIGNGVVVHLPGLF EIDGLE+NGVSCKGRILVSDRAHLLFD
Sbjct: 68 KFALHLVPSGILNEDTTCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILVSDRAHLLFD 127
Query: 174 FHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDA 233
FHQE+DGLRE+ELAKSFIGTT+RGIGPAYSSKVIRNGIRV DLRHMDT PQKLDLLLSDA
Sbjct: 128 FHQEVDGLRESELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDLRHMDTLPQKLDLLLSDA 187
Query: 234 AARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLD 293
AARF G KYTP++LREEVE YKR+A+RLEP+ITDTVHF+N+SI+QK+K+LVEGGQATMLD
Sbjct: 188 AARFQGFKYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQATMLD 247
Query: 294 IDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDR 353
IDFGTYPFVTSSSPSAGGICTGLGIAP VVGDLIGVVKAYTTRVGSGPFPTE G GGD
Sbjct: 248 IDFGTYPFVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDL 307
Query: 354 LRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQ 413
LRLAGQEFGTTTGRPRRCGWLD+VALK+ CQING +SLNLTKLDVLS+L EIQLGVAYK+
Sbjct: 308 LRLAGQEFGTTTGRPRRCGWLDIVALKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKR 367
Query: 414 FDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVP 473
DGTPVKSFP DL LLE+L VEYEVLPGW+SDISSVRNYSDLPK A+++VERIEELVGVP
Sbjct: 368 SDGTPVKSFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVP 427
Query: 474 INYIGVGPGRDALIYK 489
I+YIG+GPGRDALIYK
Sbjct: 428 IHYIGIGPGRDALIYK 443
>pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ3|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 442
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/442 (79%), Positives = 392/442 (88%)
Query: 48 SSLAVTANELPSQIESLSQVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTI 107
S+LAV A+ ++ SLS VSGVLGSQWGDEGKGKLVD+LA FDIVARCQGGANAGHTI
Sbjct: 1 SALAVEADPAADRVSSLSNVSGVLGSQWGDEGKGKLVDVLAPRFDIVARCQGGANAGHTI 60
Query: 108 YNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDR 167
YN+EGKKFALHLVPSGIL+E T+CV+GNG V+H+PG F EIDGL++NGVSC GRILVSDR
Sbjct: 61 YNSEGKKFALHLVPSGILHEGTLCVVGNGAVIHVPGFFGEIDGLQSNGVSCDGRILVSDR 120
Query: 168 AHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLD 227
AHLLFD HQ +DGLREAELA SFIGTT+RGIGP YSSKV RNG+RVCDLRHMDTF KLD
Sbjct: 121 AHLLFDLHQTVDGLREAELANSFIGTTKRGIGPCYSSKVTRNGLRVCDLRHMDTFGDKLD 180
Query: 228 LLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGG 287
+L DAAARF G KY+ +L+EEVE+YK+FAERLEPFI DTVH +NESI QK+KILVEGG
Sbjct: 181 VLFEDAAARFEGFKYSKGMLKEEVERYKKFAERLEPFIADTVHVLNESIRQKKKILVEGG 240
Query: 288 QATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIF 347
QATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRV+GDLIGVVKAYTTRVGSGPFPTE+
Sbjct: 241 QATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVIGDLIGVVKAYTTRVGSGPFPTELL 300
Query: 348 GQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQL 407
G+ GD LR AG EFGTTTGRPRRCGWLD+VALKYCC ING SSLNLTKLDVLS LPEI+L
Sbjct: 301 GEEGDVLRKAGMEFGTTTGRPRRCGWLDIVALKYCCDINGFSSLNLTKLDVLSGLPEIKL 360
Query: 408 GVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIE 467
GV+Y Q DG ++SFP DL LEQ++V YEVLPGW SDISSVR+YS+LP+ AR +VERIE
Sbjct: 361 GVSYNQMDGEKLQSFPGDLDTLEQVQVNYEVLPGWDSDISSVRSYSELPQAARRYVERIE 420
Query: 468 ELVGVPINYIGVGPGRDALIYK 489
EL GVP++YIGVGPGRDALIYK
Sbjct: 421 ELAGVPVHYIGVGPGRDALIYK 442
>pdb|1J4B|A Chain A, Recombinant Mouse-muscle Adenylosuccinate Synthetase
pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1IWE|B Chain B, Imp Complex Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase
pdb|1LNY|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LNY|B Chain B, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
Imp, Gdp And Mg
pdb|1LON|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
Adenylosuccinate Synthetase Complexed With
6-Phosphoryl-Imp, Gdp And Hadacidin
pdb|1LOO|A Chain A, Crystal Structure Of The Mouse-Muscle Adenylosuccinate
Synthetase Ligated With Gtp
pdb|1MEZ|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Samp, Gdp, So4(2-), And Mg(2+)
pdb|1MF0|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp, Gdp, Hpo4(2-), And Mg(2+)
pdb|1MF1|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
Synthetase Complexed With Amp
pdb|2DGN|A Chain A, Mouse Muscle Adenylosuccinate Synthetase Partially Ligated
Complex With Gtp, 2'-Deoxy-Imp
Length = 457
Score = 438 bits (1126), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/430 (50%), Positives = 304/430 (70%), Gaps = 13/430 (3%)
Query: 65 SQVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGI 124
S+V+ VLG+QWGDEGKGK+VD+LA DIV+RCQGG NAGHT+ +GK++ HL+PSGI
Sbjct: 31 SRVTVVLGAQWGDEGKGKVVDLLATDADIVSRCQGGNNAGHTVV-VDGKEYDFHLLPSGI 89
Query: 125 LNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVS-CKGRILVSDRAHLLFDFHQEIDGL-- 181
+N V IGNGVV+HLPGLF E + E G+ + R+++SDRAHL+FDFHQ +DGL
Sbjct: 90 INTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDGLQE 149
Query: 182 --REAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDL-RHMDTFPQKLDLLLSDAAARFP 238
R+A+ K+ IGTT++GIGP YSSK R G+R+CDL D F + L + FP
Sbjct: 150 VQRQAQEGKN-IGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSARFKNLAHQHQSMFP 208
Query: 239 GLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESI-AQKRKILVEGGQATMLDIDFG 297
L+ + ++++ K FAER+ P + D V+FM E++ +K+LVEG A +LDIDFG
Sbjct: 209 TLEID---VEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKVLVEGANAALLDIDFG 265
Query: 298 TYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLA 357
TYPFVTSS+ + GG+CTGLGI P+ +GD+ GVVKAYTTRVG G FPTE + GD L+
Sbjct: 266 TYPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINEIGDLLQNR 325
Query: 358 GQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGT 417
G E+G TTGR RRCGWLD++ L+Y +NG ++L LTKLD+L L EI++G++YK +G
Sbjct: 326 GHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLSEIKVGISYK-LNGK 384
Query: 418 PVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYI 477
+ FPA+ +L++++VEYE LPGW++D + R + DLP A+ +V +E +GV + ++
Sbjct: 385 RIPYFPANQEILQKVEVEYETLPGWKADTTGARKWEDLPPQAQSYVRFVENHMGVAVKWV 444
Query: 478 GVGPGRDALI 487
GVG R+++I
Sbjct: 445 GVGKSRESMI 454
>pdb|2V40|A Chain A, Human Adenylosuccinate Synthetase Isozyme 2 In Complex
With Gdp
Length = 459
Score = 422 bits (1086), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/431 (49%), Positives = 302/431 (70%), Gaps = 13/431 (3%)
Query: 65 SQVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGI 124
++V+ VLG+QWGDEGKGK+VD+LA+ DIV RCQGG NAGHT+ + ++ HL+PSGI
Sbjct: 31 NRVTVVLGAQWGDEGKGKVVDLLAQDADIVCRCQGGNNAGHTVV-VDSVEYDFHLLPSGI 89
Query: 125 LNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCKG---RILVSDRAHLLFDFHQEIDGL 181
+N + IGNGVV+HLPGLF E + G +G R+++SDRAH++FDFHQ DG+
Sbjct: 90 INPNVTAFIGNGVVIHLPGLFEEAEKNVQKGKGLEGWEKRLIISDRAHIVFDFHQAADGI 149
Query: 182 REA---ELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDL-RHMDTFPQKLDLLLSDAAARF 237
+E E A +GTT++GIGP YSSK R+G+R+CDL D F ++ +L + + +
Sbjct: 150 QEQQRQEQAGKNLGTTKKGIGPVYSSKAARSGLRMCDLVSDFDGFSERFKVLANQYKSIY 209
Query: 238 PGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESI-AQKRKILVEGGQATMLDIDF 296
P L+ + E++K K + E+++P + D V+F+ E++ +KILVEG A +LDIDF
Sbjct: 210 PTLEID---IEGELQKLKGYMEKIKPMVRDGVYFLYEALHGPPKKILVEGANAALLDIDF 266
Query: 297 GTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRL 356
GTYPFVTSS+ + GG+CTGLG+ P+ VG++ GVVKAYTTRVG G FPTE + G+ L+
Sbjct: 267 GTYPFVTSSNCTVGGVCTGLGMPPQNVGEVYGVVKAYTTRVGIGAFPTEQDNEIGELLQT 326
Query: 357 AGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDG 416
G+EFG TTGR RRCGWLD+V LKY ING ++L LTKLD+L EI++GVAYK DG
Sbjct: 327 RGREFGVTTGRKRRCGWLDLVLLKYAHMINGFTALALTKLDILDMFTEIKVGVAYK-LDG 385
Query: 417 TPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINY 476
+ PA+ +L +++V+Y+ LPGW +DIS+ R + +LP A+ +V IE+ + +P+ +
Sbjct: 386 EIIPHIPANQEVLNKVEVQYKTLPGWNTDISNARAFKELPVNAQNYVRFIEDELQIPVKW 445
Query: 477 IGVGPGRDALI 487
IGVG R+++I
Sbjct: 446 IGVGKSRESMI 456
>pdb|3HID|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Yersinia Pestis Co92
Length = 432
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/422 (45%), Positives = 259/422 (61%), Gaps = 14/422 (3%)
Query: 70 VLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 129
VLG+QWGDEGKGK+VD+L E V R QGG NAGHT+ G+K LHL+PSGIL E+
Sbjct: 7 VLGTQWGDEGKGKVVDLLTERAKYVVRYQGGHNAGHTLV-INGEKTVLHLIPSGILRENV 65
Query: 130 VCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKS 189
+ +IGNGVV+ L E+ LEA GV + R+L+S+ L+ +H +D RE
Sbjct: 66 ISIIGNGVVLAPDALMKEMTELEARGVPVRERLLLSEACPLILPYHVALDNAREKARGAK 125
Query: 190 FIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLRE 249
IGTT RGIGPAY KV R G+RV DL + +TF KL ++ F + Y +E
Sbjct: 126 AIGTTGRGIGPAYEDKVARRGLRVSDLFNKETFAIKLKEIVE--YHNFQLVHY----YKE 179
Query: 250 EVEKYKR-------FAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFV 302
Y++ A+ L + D ++ + Q I+ EG Q T+LDID GTYP+V
Sbjct: 180 AAVDYQKVLDDVLAIADILTAMVVDVSELLDNARKQGELIMFEGAQGTLLDIDHGTYPYV 239
Query: 303 TSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFG 362
TSS+ +AGG+ TG G+ PR V ++G+VKAY+TRVG+GPFPTE+ + G+ LR G E+G
Sbjct: 240 TSSNTTAGGVATGSGLGPRYVDYVLGIVKAYSTRVGAGPFPTELNDETGEFLRKQGNEYG 299
Query: 363 TTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSF 422
TTGR RR GWLD+VA++ QIN LS +TKLDVL L E++L V Y+ DG V +
Sbjct: 300 ATTGRSRRTGWLDIVAVRRAVQINSLSGFCMTKLDVLDGLKEVKLCVGYRMPDGREVDTT 359
Query: 423 PADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPG 482
P E ++ YE +PGW V+ +S LP+ A +++R+EEL GVPI+ I GP
Sbjct: 360 PLAAEGWEGIEPIYETMPGWSETTFGVKEHSKLPQAALNYIQRVEELTGVPIDIISTGPD 419
Query: 483 RD 484
RD
Sbjct: 420 RD 421
>pdb|1P9B|A Chain A, Structure Of Fully Ligated Adenylosuccinate Synthetase
From Plasmodium Falciparum
Length = 442
Score = 358 bits (918), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 189/437 (43%), Positives = 275/437 (62%), Gaps = 14/437 (3%)
Query: 60 QIESLSQ--VSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFAL 117
QI+++ + V +LG+QWGDEGKGK++D+L+E+ DI R GGANAGHTI + KK+AL
Sbjct: 7 QIKNVDKGNVVAILGAQWGDEGKGKIIDMLSEYSDITCRFNGGANAGHTI-SVNDKKYAL 65
Query: 118 HLVPSGILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQE 177
HL+P G+L ++ + V+GNG+V+H+ L EI E+ G R+ +S++AH+LFD HQ
Sbjct: 66 HLLPCGVLYDNNISVLGNGMVIHVKSLMEEI---ESVGGKLLDRLYLSNKAHILFDIHQI 122
Query: 178 IDGLREAELAK--SFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAA 235
ID ++E + K IGTT+RGIGP YS+K R GIR+ L++ + F L+
Sbjct: 123 IDSIQETKKLKEGKQIGTTKRGIGPCYSTKASRIGIRLGTLKNFENFKNMYSKLIDHLMD 182
Query: 236 RFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDID 295
+ +Y + +E+ + + +L I D + FMN ++ +K+L+EG A MLDID
Sbjct: 183 LYNITEYDKE---KELNLFYNYHIKLRDRIVDVISFMNTNLENNKKVLIEGANAAMLDID 239
Query: 296 FGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLR 355
FGTYP+VTSS + GG+ +GLGI + + ++GVVK+Y TRVG GPF TE+ G LR
Sbjct: 240 FGTYPYVTSSCTTVGGVFSGLGIHHKKLNLVVGVVKSYLTRVGCGPFLTELNNDVGQYLR 299
Query: 356 LAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFD 415
G E+GTTT RPRRCGWLD+ L Y IN + +NLTKLDVLS L EI L V +K
Sbjct: 300 EKGHEYGTTTKRPRRCGWLDIPMLLYVKCINSIDMINLTKLDVLSGLEEILLCVNFKNKK 359
Query: 416 GTPV---KSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGV 472
+ +P + + E+ + YE GW+ DIS+ + +LP+ A++++ IE+ +
Sbjct: 360 TGELLEKGCYPVEEEISEEYEPVYEKFSGWKEDISTCNEFDELPENAKKYILAIEKYLKT 419
Query: 473 PINYIGVGPGRDALIYK 489
PI +IGVGP R +I K
Sbjct: 420 PIVWIGVGPNRKNMIVK 436
>pdb|1KJX|A Chain A, Imp Complex Of E. Coli Adenylosuccinate Synthetase
pdb|1KKB|A Chain A, Complex Of Escherichia Coli Adenylosuccinate Synthetase
With Imp And Hadacidin
pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Synthetase With Imp,
Hadacidin, Pyrophosphate, And Mg
Length = 432
Score = 353 bits (907), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 189/421 (44%), Positives = 258/421 (61%), Gaps = 14/421 (3%)
Query: 70 VLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 129
VLG+QWGDEGKGK+VD+L E V R QGG NAGHT+ G+K LHL+PSGIL E+
Sbjct: 7 VLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLV-INGEKTVLHLIPSGILRENV 65
Query: 130 VCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKS 189
+IGNGVV+ L E+ LE G+ + R+L+S+ L+ D+H +D RE
Sbjct: 66 TSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAK 125
Query: 190 FIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLRE 249
IGTT RGIGPAY KV R G+RV DL +TF +KL ++ F + Y +
Sbjct: 126 AIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVME--YHNFQLVNY----YKA 179
Query: 250 EVEKYKRF-------AERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFV 302
E Y++ A+ L + D ++++ + ++ EG Q T+LDID GTYP+V
Sbjct: 180 EAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYV 239
Query: 303 TSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFG 362
TSS+ +AGG+ TG G+ PR V ++G++KAY+TRVG+GPFPTE+F + G+ L G EFG
Sbjct: 240 TSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFG 299
Query: 363 TTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSF 422
TTGR RR GWLD VA++ Q+N LS LTKLDVL L E++L VAY+ DG V +
Sbjct: 300 ATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTT 359
Query: 423 PADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPG 482
P + ++ YE +PGW V++ S LP+ A +++RIEEL GVPI+ I GP
Sbjct: 360 PLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPD 419
Query: 483 R 483
R
Sbjct: 420 R 420
>pdb|1CG0|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Hadacidin, Gdp, 6-Phosphoryl-Imp, And
Mg2+
pdb|1CH8|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With A Stringent Effector, Ppg2':3'p
pdb|1QF4|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1QF5|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1CIB|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Gdp, Imp, Hadacidin, And No3
pdb|2GCQ|A Chain A, Fully Ligated E.Coli Adenylosuccinate Synthetase With Gtp,
2'-Deoxy- Imp And Hadacidin
pdb|1SON|A Chain A, Adenylosuccinate Synthetase In Complex With The Natural
Feedback Inhibitor Amp
pdb|1SOO|A Chain A, Adenylosuccinate Synthetase Inhibited By Hydantocidin
5'-Monophosphate
pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADE|B Chain B, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADI|A Chain A, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And 25
Degrees Celsius
pdb|1ADI|B Chain B, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And 25
Degrees Celsius
pdb|1HOO|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1HOO|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1GIM|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 100k (Ph 6.5)
pdb|1GIN|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 298k (Ph 6.5).
pdb|1KSZ|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli, Data Collected At 298k
pdb|1NHT|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli Data Collected At 100k
pdb|1JUY|A Chain A, Refined Crystal Structure Of Adenylosuccinate Synthetase
From Escherichia Coli Complexed With Hydantocidin 5'-
Phosphate Gdp, Hpo4(2-), Mg2+, And Hadacidin
Length = 431
Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 189/421 (44%), Positives = 258/421 (61%), Gaps = 14/421 (3%)
Query: 70 VLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 129
VLG+QWGDEGKGK+VD+L E V R QGG NAGHT+ G+K LHL+PSGIL E+
Sbjct: 6 VLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLV-INGEKTVLHLIPSGILRENV 64
Query: 130 VCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKS 189
+IGNGVV+ L E+ LE G+ + R+L+S+ L+ D+H +D RE
Sbjct: 65 TSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAK 124
Query: 190 FIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLRE 249
IGTT RGIGPAY KV R G+RV DL +TF +KL ++ F + Y +
Sbjct: 125 AIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVME--YHNFQLVNY----YKA 178
Query: 250 EVEKYKRF-------AERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFV 302
E Y++ A+ L + D ++++ + ++ EG Q T+LDID GTYP+V
Sbjct: 179 EAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYV 238
Query: 303 TSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFG 362
TSS+ +AGG+ TG G+ PR V ++G++KAY+TRVG+GPFPTE+F + G+ L G EFG
Sbjct: 239 TSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFG 298
Query: 363 TTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSF 422
TTGR RR GWLD VA++ Q+N LS LTKLDVL L E++L VAY+ DG V +
Sbjct: 299 ATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTT 358
Query: 423 PADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPG 482
P + ++ YE +PGW V++ S LP+ A +++RIEEL GVPI+ I GP
Sbjct: 359 PLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPD 418
Query: 483 R 483
R
Sbjct: 419 R 419
>pdb|1HON|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HON|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HOP|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
pdb|1HOP|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
Length = 431
Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 189/421 (44%), Positives = 258/421 (61%), Gaps = 14/421 (3%)
Query: 70 VLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 129
VLG+QWGDEGKGK+VD+L E V R QGG NAGHT+ G+K LHL+PSGIL E+
Sbjct: 6 VLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLV-INGEKTVLHLIPSGILRENV 64
Query: 130 VCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKS 189
+IGNGVV+ L E+ LE G+ + R+L+S+ L+ D+H +D RE
Sbjct: 65 TSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAK 124
Query: 190 FIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLRE 249
IGTT RGIGPAY KV R G+RV DL +TF +KL ++ F + Y +
Sbjct: 125 AIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVME--YHNFQLVNY----YKA 178
Query: 250 EVEKYKRF-------AERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFV 302
E Y++ A+ L + D ++++ + ++ EG Q T+LDID GTYP+V
Sbjct: 179 EAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYV 238
Query: 303 TSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFG 362
TSS+ +AGG+ TG G+ PR V ++G++KAY+TRVG+GPFPTE+F + G+ L G EFG
Sbjct: 239 TSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFG 298
Query: 363 TTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSF 422
TTGR RR GWLD VA++ Q+N LS LTKLDVL L E++L VAY+ DG V +
Sbjct: 299 ATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTT 358
Query: 423 PADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPG 482
P + ++ YE +PGW V++ S LP+ A +++RIEEL GVPI+ I GP
Sbjct: 359 PLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPD 418
Query: 483 R 483
R
Sbjct: 419 R 419
>pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 352 bits (904), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 188/421 (44%), Positives = 258/421 (61%), Gaps = 14/421 (3%)
Query: 70 VLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 129
VLG+QWGDEG+GK+VD+L E V R QGG NAGHT+ G+K LHL+PSGIL E+
Sbjct: 6 VLGTQWGDEGQGKIVDLLTERAKYVVRYQGGHNAGHTLV-INGEKTVLHLIPSGILRENV 64
Query: 130 VCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKS 189
+IGNGVV+ L E+ LE G+ + R+L+S+ L+ D+H +D RE
Sbjct: 65 TSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAK 124
Query: 190 FIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLRE 249
IGTT RGIGPAY KV R G+RV DL +TF +KL ++ F + Y +
Sbjct: 125 AIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVME--YHNFQLVNY----YKA 178
Query: 250 EVEKYKRF-------AERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFV 302
E Y++ A+ L + D ++++ + ++ EG Q T+LDID GTYP+V
Sbjct: 179 EAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYV 238
Query: 303 TSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFG 362
TSS+ +AGG+ TG G+ PR V ++G++KAY+TRVG+GPFPTE+F + G+ L G EFG
Sbjct: 239 TSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFG 298
Query: 363 TTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSF 422
TTGR RR GWLD VA++ Q+N LS LTKLDVL L E++L VAY+ DG V +
Sbjct: 299 ATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTT 358
Query: 423 PADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPG 482
P + ++ YE +PGW V++ S LP+ A +++RIEEL GVPI+ I GP
Sbjct: 359 PLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPD 418
Query: 483 R 483
R
Sbjct: 419 R 419
>pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 350 bits (899), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 188/421 (44%), Positives = 257/421 (61%), Gaps = 14/421 (3%)
Query: 70 VLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 129
VLG+QWGDEGKGK+VD+L E V R QGG NAGHT+ G+K LHL+PSGIL E+
Sbjct: 6 VLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLV-INGEKTVLHLIPSGILRENV 64
Query: 130 VCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKS 189
+IGNGVV+ L E+ LE G+ + R+L+S+ L+ D+H +D RE
Sbjct: 65 TSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAK 124
Query: 190 FIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLRE 249
IGTT RGIGPAY KV G+RV DL +TF +KL ++ F + Y +
Sbjct: 125 AIGTTGRGIGPAYEDKVALRGLRVGDLFDKETFAEKLKEVME--YHNFQLVNY----YKA 178
Query: 250 EVEKYKRF-------AERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFV 302
E Y++ A+ L + D ++++ + ++ EG Q T+LDID GTYP+V
Sbjct: 179 EAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYV 238
Query: 303 TSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFG 362
TSS+ +AGG+ TG G+ PR V ++G++KAY+TRVG+GPFPTE+F + G+ L G EFG
Sbjct: 239 TSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFG 298
Query: 363 TTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSF 422
TTGR RR GWLD VA++ Q+N LS LTKLDVL L E++L VAY+ DG V +
Sbjct: 299 ATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTT 358
Query: 423 PADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPG 482
P + ++ YE +PGW V++ S LP+ A +++RIEEL GVPI+ I GP
Sbjct: 359 PLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPD 418
Query: 483 R 483
R
Sbjct: 419 R 419
>pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 350 bits (899), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 188/421 (44%), Positives = 257/421 (61%), Gaps = 14/421 (3%)
Query: 70 VLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 129
VLG+QWGDEGKGK+VD+L E V R QGG NAGHT+ G+K LHL+PSGIL E+
Sbjct: 6 VLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLV-INGEKTVLHLIPSGILRENV 64
Query: 130 VCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKS 189
+IGNGVV+ L E+ LE G+ + R+L+S+ L+ D+H +D RE
Sbjct: 65 TSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAK 124
Query: 190 FIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLRE 249
IGTT RGIGPAY KV R G+RV DL +TF +KL ++ F + Y +
Sbjct: 125 AIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVME--YHNFQLVNY----YKA 178
Query: 250 EVEKYKRF-------AERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFV 302
E Y++ A+ L + D ++++ + ++ EG Q T+LDID GTYP+V
Sbjct: 179 EAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYV 238
Query: 303 TSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFG 362
TSS+ +AGG+ TG G+ PR V ++G++KAY+TRVG+GPFPTE+F + G+ L G EFG
Sbjct: 239 TSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFG 298
Query: 363 TTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSF 422
TTG RR GWLD VA++ Q+N LS LTKLDVL L E++L VAY+ DG V +
Sbjct: 299 ATTGLRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTT 358
Query: 423 PADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPG 482
P + ++ YE +PGW V++ S LP+ A +++RIEEL GVPI+ I GP
Sbjct: 359 PLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPD 418
Query: 483 R 483
R
Sbjct: 419 R 419
>pdb|3R7T|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Campylobacter Jejuni
Length = 419
Score = 342 bits (878), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 187/429 (43%), Positives = 267/429 (62%), Gaps = 18/429 (4%)
Query: 63 SLSQVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPS 122
+ S+ ++G QWGDEGKGK+VD L E++D V R GG NAGHTI+ G ++ALHL PS
Sbjct: 3 AXSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTIW-VNGVRYALHLXPS 61
Query: 123 GILNEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLR 182
G+L+ + +IGNGVVV L E E + KGR+ +SDRAHL H ID +
Sbjct: 62 GVLHPRCINIIGNGVVVSPEVLIAEXAQFE----NLKGRLYISDRAHLNLKHHSLIDIAK 117
Query: 183 EAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKL-DLLLSDAAAR---FP 238
E K+ IGTT +GIGP+Y+ K+ R G RV +L PQ+L + L+ D A F
Sbjct: 118 EKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLE----PQRLCEALIKDFEANKTFFE 173
Query: 239 GLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGT 298
L+ E + KRF E L P+ITDT + +++ + +++L+EG Q + LDID GT
Sbjct: 174 XLEIEIPSAEELLADLKRFNEILTPYITDTTRXLWKALDEDKRVLLEGAQGSXLDIDHGT 233
Query: 299 YPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAG 358
YP+VTSSS + G TGLG+ P+ G++IG+VKAY TRVG+G FPTE G+ G+++ G
Sbjct: 234 YPYVTSSSTISAGTLTGLGLNPKEAGNIIGIVKAYATRVGNGAFPTEDKGEDGEKIAQIG 293
Query: 359 QEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTP 418
+E G +TGR RRCGW D VA++Y ++NGL +L+L KLDVL +I++ AY ++ G
Sbjct: 294 KEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLXKLDVLDGFEKIKICRAY-EYKGXE 352
Query: 419 VKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIG 478
+ P+D LE ++ YE GW + +++Y LP+ A++++ R+EEL GV + YI
Sbjct: 353 IDYIPSD---LENVQPIYEEXDGWDK-VFGIKDYDLLPENAKKYIARLEELAGVKVKYIS 408
Query: 479 VGPGRDALI 487
P RD I
Sbjct: 409 TSPERDDTI 417
>pdb|3UE9|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
pdb|3UE9|B Chain B, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
pdb|3UE9|C Chain C, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
pdb|3UE9|D Chain D, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
(Pura) From Burkholderia Thailandensis
Length = 452
Score = 316 bits (810), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 186/429 (43%), Positives = 244/429 (56%), Gaps = 15/429 (3%)
Query: 70 VLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDT 129
V+G+QWGDEGKGK+VD L +H V R QGG NAGHT+ GKK L L+PSGI+ E
Sbjct: 20 VVGTQWGDEGKGKIVDWLTDHAQGVVRFQGGHNAGHTLIIG-GKKTILRLIPSGIMREGV 78
Query: 130 VCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKS 189
C IGNGVV+ LF EI LE G+S + R+ +S+ L+ +H ID REA
Sbjct: 79 ACYIGNGVVLSPEALFKEIGELEEAGLSVRERLFISEATTLILPYHIAIDQAREARKGAG 138
Query: 190 FIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDV--- 246
IGTT RGIGPAY KV R +RV DL TF +L L F +Y
Sbjct: 139 KIGTTGRGIGPAYEDKVGRRALRVQDLFDARTFADRLRENLD--FHNFVLTQYLGGAAVD 196
Query: 247 LREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSS 306
+ ++ +A+RL P + D + E R +L EG Q T+LDID GTYPFVTSS+
Sbjct: 197 FQATLDTMLGYADRLRPMVADVSRRLYEENHAGRNLLFEGAQGTLLDIDHGTYPFVTSSN 256
Query: 307 PSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIF--------GQGGDRLRLAG 358
AG G G+ P+ + ++G+ KAY TRVGSGPFP+E++ Q G L G
Sbjct: 257 CVAGAAAAGAGVGPQKLNYILGITKAYCTRVGSGPFPSELYDADNPSRQDQIGITLANVG 316
Query: 359 QEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTP 418
+EFG+ TGRPRR GWLD AL+ QING+S L +TKLDVL L E++L V YK DG
Sbjct: 317 KEFGSVTGRPRRTGWLDAAALRRSIQINGVSGLCMTKLDVLDGLDEVKLCVGYK-IDGED 375
Query: 419 VKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIG 478
P + + + YE GW+ + ++ LP AR ++ R++E+ GVPI+ +
Sbjct: 376 ADLLPRGAAEVARCEPVYETFGGWKESTVGINSWDALPANARAYLTRVQEVAGVPIDMVS 435
Query: 479 VGPGRDALI 487
GP RD I
Sbjct: 436 TGPDRDETI 444
>pdb|2D7U|A Chain A, Crystal Structure Of Hypothetical Adenylosuccinate
Synthetase, Ph0438 From Pyrococcus Horikoshii Ot3
Length = 339
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 199/420 (47%), Gaps = 94/420 (22%)
Query: 70 VLGSQWGDEGKGKLVDILAEHFD--IVARCQGGANAGHTIYNAEGKKFALHLVPSGILNE 127
V+G QWGDEGKG +V L+ H + I+AR G NAGH++ GKK+A+ +P+G +
Sbjct: 6 VVGGQWGDEGKGSIVAYLSLHDEPEIIARGGVGTNAGHSVV-INGKKYAVRQIPTGFMQT 64
Query: 128 DTVCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELA 187
+IG GV+V F+E++ L+ + K R+ + R ++ + H+++D R
Sbjct: 65 KARLLIGAGVLVDPEVFFHELEQLK--DFNVKDRVGIDYRCAIIEEKHKQLD--RTNGYL 120
Query: 188 KSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVL 247
IGTT G GPA + +V+R + D++
Sbjct: 121 HGKIGTTGSGCGPANADRVMRKAKQAKDVKE----------------------------- 151
Query: 248 REEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSP 307
LEP++TD +N+++ + +LVEG Q L + +GTYP+VTS
Sbjct: 152 -------------LEPYLTDVAQEINDALDEGSLVLVEGTQGFGLSLYYGTYPYVTSKDV 198
Query: 308 SAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGR 367
+A + +GI P V ++I V K++ TRVG+GPFPTE+ + DRL L E+GT TGR
Sbjct: 199 TASSVAADVGIGPTRVDEVIVVFKSFPTRVGAGPFPTEMPMEEADRLGLV--EYGTVTGR 256
Query: 368 PRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLL 427
RR GW D +Y +ING + L +T LD
Sbjct: 257 RRRVGWFDFEMARYSARINGATMLAVTMLD------------------------------ 286
Query: 428 LLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALI 487
+ + V +Y LP+ A+EF+E IEE VGVP+ I GP + +I
Sbjct: 287 -------------KYDKEAFGVTDYDKLPRKAKEFIEEIEERVGVPVGLIKTGPELEHII 333
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 18/81 (22%)
Query: 288 QATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGS----GPFP 343
+A ++++ GT+PF S A TGL +V+ D A T RV GP
Sbjct: 373 KAEGVEVNVGTFPFAASGRAMAANDTTGL---VKVIAD------AKTDRVLGVHVIGPSA 423
Query: 344 TEIFGQGGDRLRLAGQEFGTT 364
E+ QG G EFGT+
Sbjct: 424 AELVQQGA-----IGMEFGTS 439
>pdb|4DXL|A Chain A, Crystal Structure Of Ispe
(4-Diphosphocytidyl-2-C-Methyl-D-Erythritol Kinase) From
Mycobacterium Abscessus, Bound To Cmp And Atp
pdb|4ED4|A Chain A, Crystal Structure Of Ispe
(4-Diphosphocytidyl-2-C-Methyl-D-Erythritol Kinase) From
Mycobacterium Abcessus, Bound To Atp
pdb|4EMD|A Chain A, Crystal Structure Of Ispe
(4-Diphosphocytidyl-2-C-Methyl-D-Erythritol Kinase) From
Mycobacterium Abcessus, Bound To Cmp And So4
Length = 318
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 258 AERLEPFITDTVHFMNESI-AQKRKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGL 316
A RL P + + + S+ + R+ L G A L V+ S P+ +CT
Sbjct: 227 ARRLAPLLGNELQAAAVSLNPELRRTLRAGESAGAL------AGIVSGSGPTCAFLCTSA 280
Query: 317 GIAPRVVGDLIGVVKAYTTRVGSGP 341
A +V +L G T RV SGP
Sbjct: 281 DDAVQVSAELAGAGVCRTVRVASGP 305
>pdb|3Q10|A Chain A, Pantoate-Beta-Alanine Ligase From Yersinia Pestis
pdb|3Q10|B Chain B, Pantoate-Beta-Alanine Ligase From Yersinia Pestis
pdb|3Q10|C Chain C, Pantoate-Beta-Alanine Ligase From Yersinia Pestis
pdb|3Q10|D Chain D, Pantoate-Beta-Alanine Ligase From Yersinia Pestis
pdb|3Q12|A Chain A, Pantoate-Beta-Alanine Ligase From Yersinia Pestis In
Complex With Pantoate.
pdb|3Q12|B Chain B, Pantoate-Beta-Alanine Ligase From Yersinia Pestis In
Complex With Pantoate.
pdb|3Q12|C Chain C, Pantoate-Beta-Alanine Ligase From Yersinia Pestis In
Complex With Pantoate.
pdb|3Q12|D Chain D, Pantoate-Beta-Alanine Ligase From Yersinia Pestis In
Complex With Pantoate
Length = 287
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 224 QKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDT 268
+++D LL +AAA+ + +TPD E + R AE L+P D+
Sbjct: 223 RQIDALLEEAAAQLLRVGFTPD------ELFIRDAETLQPLTVDS 261
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 368 PRRCGWLDVVA--LKYCCQINGLSS---LNLTKLDVLSELPEIQLGVAYKQ--FDGTPVK 420
PR C L VV K+ I LSS +T D +S+LPEIQ G + + ++G P+
Sbjct: 610 PRACQ-LSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLS 668
Query: 421 SFPADL 426
F L
Sbjct: 669 WFQRQL 674
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 368 PRRCGWLDVVA--LKYCCQINGLSS---LNLTKLDVLSELPEIQLGVAYKQ--FDGTPVK 420
PR C L VV K+ I LSS +T D +S+LPEIQ G + + ++G P+
Sbjct: 1049 PRACQ-LSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLS 1107
Query: 421 SFPADL 426
F L
Sbjct: 1108 WFQRQL 1113
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 368 PRRCGWLDVVA--LKYCCQINGLSS---LNLTKLDVLSELPEIQLGVAYKQ--FDGTPVK 420
PR C L VV K+ I LSS +T D +S+LPEIQ G + + ++G P+
Sbjct: 691 PRACQ-LSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLS 749
Query: 421 SFPADL 426
F L
Sbjct: 750 WFQRQL 755
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,349,410
Number of Sequences: 62578
Number of extensions: 684561
Number of successful extensions: 1609
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1541
Number of HSP's gapped (non-prelim): 27
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)