Query 011288
Match_columns 489
No_of_seqs 154 out of 1017
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 23:41:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0104 PurA Adenylosuccinate 100.0 5E-166 1E-170 1268.5 35.2 421 66-488 2-424 (430)
2 TIGR00184 purA adenylosuccinat 100.0 1E-163 2E-168 1269.6 37.2 418 69-488 1-419 (425)
3 PLN02513 adenylosuccinate synt 100.0 3E-163 7E-168 1268.1 39.7 426 64-489 1-426 (427)
4 PRK13786 adenylosuccinate synt 100.0 1E-162 2E-167 1262.0 40.2 419 67-489 2-423 (424)
5 PRK13787 adenylosuccinate synt 100.0 3E-162 6E-167 1258.6 39.2 419 66-489 2-422 (423)
6 PTZ00350 adenylosuccinate synt 100.0 3E-161 6E-166 1255.9 39.8 427 56-489 5-435 (436)
7 PRK13784 adenylosuccinate synt 100.0 9E-161 2E-165 1248.7 38.1 417 66-489 2-421 (428)
8 PRK01117 adenylosuccinate synt 100.0 2E-160 4E-165 1250.8 37.0 421 66-488 2-423 (430)
9 smart00788 Adenylsucc_synt Ade 100.0 9E-160 2E-164 1243.5 37.9 420 67-488 1-421 (421)
10 PRK13785 adenylosuccinate synt 100.0 3E-158 6E-163 1235.7 37.5 419 66-489 1-450 (454)
11 PF00709 Adenylsucc_synt: Aden 100.0 1E-158 3E-163 1237.6 28.5 420 67-488 1-421 (421)
12 PRK13783 adenylosuccinate synt 100.0 2E-155 5E-160 1200.9 38.7 404 66-489 1-404 (404)
13 PRK13788 adenylosuccinate synt 100.0 7E-153 2E-157 1182.5 37.6 393 67-488 3-399 (404)
14 KOG1355 Adenylosuccinate synth 100.0 5E-152 1E-156 1137.1 29.0 429 56-489 20-454 (455)
15 cd03108 AdSS Adenylosuccinate 100.0 7E-150 2E-154 1145.9 34.6 362 68-481 2-363 (363)
16 PTZ00351 adenylosuccinate synt 100.0 4E-147 9E-152 1162.1 35.7 425 56-489 160-708 (710)
17 PRK04293 adenylosuccinate synt 100.0 5E-133 1E-137 1010.0 29.1 329 66-489 2-332 (333)
18 PF13316 DUF4087: Protein of u 52.1 4.3 9.2E-05 35.9 -0.3 10 369-378 7-16 (101)
19 COG0552 FtsY Signal recognitio 48.0 18 0.00039 38.3 3.5 63 377-466 272-338 (340)
20 COG3040 Blc Bacterial lipocali 37.8 77 0.0017 30.7 5.7 100 56-159 58-164 (174)
21 PF00448 SRP54: SRP54-type pro 35.5 1.1E+02 0.0025 29.4 6.6 21 380-400 134-154 (196)
22 PRK05414 urocanate hydratase; 32.1 3.7E+02 0.008 30.5 10.4 161 130-302 100-278 (556)
23 TIGR01228 hutU urocanate hydra 29.6 4.6E+02 0.01 29.6 10.6 160 130-301 91-268 (545)
24 PF06279 DUF1033: Protein of u 29.1 34 0.00074 31.3 1.7 33 438-470 16-48 (120)
25 KOG0176 20S proteasome, regula 27.7 80 0.0017 31.5 4.1 70 68-148 116-185 (241)
26 PF01175 Urocanase: Urocanase; 26.6 1.9E+02 0.0041 32.7 7.1 159 130-300 90-266 (546)
27 PRK04220 2-phosphoglycerate ki 25.7 1E+02 0.0022 32.3 4.6 90 191-287 98-198 (301)
28 PF11181 YflT: Heat induced st 25.0 1.8E+02 0.0039 25.1 5.4 60 136-203 4-63 (103)
29 PRK14042 pyruvate carboxylase 24.9 3.1E+02 0.0067 31.4 8.6 85 126-216 139-228 (596)
30 COG0800 Eda 2-keto-3-deoxy-6-p 22.3 88 0.0019 31.2 3.3 32 130-169 64-95 (211)
31 PRK12339 2-phosphoglycerate ki 20.1 1.3E+02 0.0028 29.1 3.9 91 192-288 10-106 (197)
No 1
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.6e-166 Score=1268.51 Aligned_cols=421 Identities=51% Similarity=0.887 Sum_probs=412.3
Q ss_pred ceEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHH
Q 011288 66 QVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLF 145 (489)
Q Consensus 66 ~~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~L~ 145 (489)
+.+||||+|||||||||||||||.++|+|||||||+||||||+ ++|++|+|||||||+|+|++.|+|||||||||++|+
T Consensus 2 ~~~VVvG~QWGDEGKGKIvD~L~~~~d~VvR~qGG~NAGHTvv-v~g~~~~LhLiPSGil~~~~~~vIGnGvVvdP~~L~ 80 (430)
T COG0104 2 MNVVVVGAQWGDEGKGKIVDYLADRADVVVRYQGGHNAGHTVV-VNGEKYKLHLIPSGILRPGATLVIGNGVVVDPEVLL 80 (430)
T ss_pred ceEEEEeCccccCCCceeeeeeccCcCEEEEccCCCCCCcEEE-ECCEEEEEEeccccccCCCceEEEcCcEEECHHHHH
Confidence 5679999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCC-CCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHHH
Q 011288 146 NEIDGLEANGVSC-KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQ 224 (489)
Q Consensus 146 ~Ei~~L~~~Gi~~-~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~~ 224 (489)
+|++.|+++|++. .+||+||+|||||+|||+++|+++|+.++.++||||||||||||+||++|.|||++||+|++.|++
T Consensus 81 ~Ei~~L~~~g~~~~~~rL~Is~~ahlIlpyH~~lD~~~E~~~~~~kIGTTgrGIGPaY~DKv~R~giRv~DL~d~~~l~~ 160 (430)
T COG0104 81 KEIEELEERGVDVVRDRLRISDRAHLILPYHIELDRAREKALGKKKIGTTGRGIGPAYEDKVARRGIRVGDLLDPETLRE 160 (430)
T ss_pred HHHHHHHhcCCccccccEEEccCcccccHHHHHHhhhhhhhcCCCcccCCCCccChhhhhhHhhhhhhhhhhcCHHHHHH
Confidence 9999999999974 379999999999999999999999988888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccC-CCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCccc
Q 011288 225 KLDLLLSDAAARFPG-LKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVT 303 (489)
Q Consensus 225 kL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~VT 303 (489)
||+.+++++|..+.+ ++.++.++++++++|.+++++++||++|+..+|++|+++||+||||||||+|||+|||||||||
T Consensus 161 kle~~~~~~n~~l~~~y~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~a~~~g~~VLfEGAQG~lLDidhGTYPyVT 240 (430)
T COG0104 161 KLERLLEYKNFQLVKYYGAEAVDFEDILDEYYEYAERLKPYVTDVSVLLNDALDAGKRVLFEGAQGTLLDIDHGTYPYVT 240 (430)
T ss_pred HHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHcCCeEEEEcCccceecccCCcCcccc
Confidence 999999999987775 5777788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHH
Q 011288 304 SSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCC 383 (489)
Q Consensus 304 SSntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlDlv~lrya~ 383 (489)
||||+++++++|+|++|+.|++||||+|||+||||+||||||+++|.+++|++.|+|||+||||||||||||+|++|||+
T Consensus 241 SSNttagg~~~gsGvgP~~i~~ViGV~KAYtTRVG~GPFPTEl~de~ge~l~~~G~EyGttTGR~RRcGWfD~v~~r~A~ 320 (430)
T COG0104 241 SSNTTAGGVATGSGVGPTKIDYVIGVFKAYTTRVGEGPFPTELFDEVGEKLREVGHEYGTTTGRPRRCGWFDAVLLRYAV 320 (430)
T ss_pred cCCcchhheeccCCCCccccceEEEEEEEeeccccCCCCCcccchHHHHHHhhcCceecccCCCCccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHHH
Q 011288 384 QINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFV 463 (489)
Q Consensus 384 ~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~yi 463 (489)
++||+|+|+|||||||++|++||||++|++ ||+++++||+++++|++|+||||+||||+++++++++|++||+||++||
T Consensus 321 ~iNG~t~laiTKlDvLdgl~~ikiCv~Y~~-dG~~id~~P~~~~~~~~~~PiYe~~pGW~~~~~g~~~~~~LP~~A~~Yi 399 (430)
T COG0104 321 RINGITGLAITKLDVLDGLDEIKICVAYEI-DGKRIDYFPADLDDLARCEPIYETLPGWSEDTTGVKSYDDLPENARKYI 399 (430)
T ss_pred hhcCccceeeeeeehhcCCCcceeEEEEec-CCceeeecccchhhhhcCceeeeccCCCccccccccchHHcCHHHHHHH
Confidence 999999999999999999999999999996 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEeeCCCcccccc
Q 011288 464 ERIEELVGVPINYIGVGPGRDALIY 488 (489)
Q Consensus 464 ~~IE~~~gvpi~~isvGP~R~~~i~ 488 (489)
++|||++|+||.+||+||+|+|||.
T Consensus 400 ~~iEE~~gvPV~iistGP~R~~ti~ 424 (430)
T COG0104 400 KRIEELVGVPVTIISTGPEREDTII 424 (430)
T ss_pred HHHHHHHCCCEEEEecCCChhheEE
Confidence 9999999999999999999999985
No 2
>TIGR00184 purA adenylosuccinate synthase. Alternate name IMP--aspartate ligase.
Probab=100.00 E-value=1.1e-163 Score=1269.64 Aligned_cols=418 Identities=50% Similarity=0.867 Sum_probs=410.1
Q ss_pred EEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHHH
Q 011288 69 GVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNEI 148 (489)
Q Consensus 69 vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~L~~Ei 148 (489)
||||+|||||||||||||||+++|+|||||||+||||||+ ++|+||+|||||||+|+|+++|+|||||||||+.|++||
T Consensus 1 vVvG~QwGDEGKGKivD~La~~~d~VvR~~GG~NAGHTVv-~~g~k~~lhliPSGil~~~~~~vIG~GvVidp~~l~~Ei 79 (425)
T TIGR00184 1 VVVGGQWGDEGKGKIVDLLADKPDIVARYQGGHNAGHTIV-IDGVKYGLHLIPSGFLYPDAKLLIGNGVVVDPEVLLKEM 79 (425)
T ss_pred CeEcCccCCCCCchhehhhccCCCEEEEcCCcCCCCcEEE-ECCEEEEEEecCccccCCCceEEECCeEEEcHHHHHHHH
Confidence 5899999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHHHHHHH
Q 011288 149 DGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDL 228 (489)
Q Consensus 149 ~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~~kL~~ 228 (489)
+.|+++|+++.+||+||+|||||||||+++|+++|.+++.++||||||||||||+||++|.|||++||+|++.|++||+.
T Consensus 80 ~~L~~~g~~~~~rL~Is~rahli~p~H~~lD~~~E~~~g~~~IGTT~rGIGPaY~dK~~R~giR~~Dl~~~~~~~~kl~~ 159 (425)
T TIGR00184 80 EYLEKRGISVRDRLFVSYRCHLILPYHKKLDKAREKSKLAKKIGTTGKGIGPAYEDKVARSGLRVGDLLDDEAFAEKAKN 159 (425)
T ss_pred HHHHHcCCCCCCCEEEeCCCCCCCCchHHHHHHhHHhcCCCCcCCCCCCcHHHHHHHhhccccchhhhcCHHHHHHHHHH
Confidence 99999999877899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccC-CCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCcccCCCC
Q 011288 229 LLSDAAARFPG-LKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSP 307 (489)
Q Consensus 229 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~VTSSnt 307 (489)
+++++|..+.. ++..+.++++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||+|||||||||||||
T Consensus 160 ~~~~~n~~~~~~y~~~~~~~~~~~~~~~~~~~~l~p~v~D~~~~l~~a~~~gk~vLfEGAQG~lLDid~GtYPfVTSS~t 239 (425)
T TIGR00184 160 ILEYLNEQLVKYYKDEGVDYEKKLDEYMKYAEELKPFVVDVSVELNEALDEGEKVLFEGAQGTMLDIDYGTYPYVTSSNT 239 (425)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHCCCeEEEEcchhhhhhhccCcCcCccCcCC
Confidence 99999988886 45566789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcC
Q 011288 308 SAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQING 387 (489)
Q Consensus 308 ta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlDlv~lrya~~ing 387 (489)
+++++|+|+|++|+.|++||||+|||+||||+||||||++++.++.||+.|+|||+||||||||||||+|++|||+++||
T Consensus 240 ~agg~~~g~Gi~p~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~lr~~g~E~GttTGRpRR~GwlD~v~lrya~~ing 319 (425)
T TIGR00184 240 TAGGVATGVGIGPTKVDEVIGVFKAYTTRVGAGPFPTELSDEEGEKLGTKGAEFGTTTGRRRRCGWFDLVAARYACRLNG 319 (425)
T ss_pred hHHHHHhccCCCccccceEEEEEEeccccccCCCCCcccchhHHHHHHhccCcccCcCCCCceeecchHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHHHHHHH
Q 011288 388 LSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIE 467 (489)
Q Consensus 388 ~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~yi~~IE 467 (489)
+|+||||||||||++++||||++|++ +|+.+++||+++..|++|+||||+||||++++++|++|++||++||+||++||
T Consensus 320 ~t~lalTkLDvL~~~~~ikic~~Y~~-~g~~~~~~P~~~~~l~~~~PvYe~~~GW~~~~~~~~~~~~LP~~a~~yi~~iE 398 (425)
T TIGR00184 320 ATQLALTKLDVLDGIDEIKVCVAYRM-KGEILELFPLDLKDLKGVEPIYETLPGWDKECTGVTEYSDLPENAKKYIERIE 398 (425)
T ss_pred CCeEEEecccccCCCCeeeEEEEEee-CCEEeeeCCCChhhhcccEEEEEEcCCCccccccCcchhhCCHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEeeCCCcccccc
Q 011288 468 ELVGVPINYIGVGPGRDALIY 488 (489)
Q Consensus 468 ~~~gvpi~~isvGP~R~~~i~ 488 (489)
+++|+||.|||+||+|+|||.
T Consensus 399 ~~~g~pV~~is~Gp~R~~~I~ 419 (425)
T TIGR00184 399 ELTGVPVTIISTGPEREQTID 419 (425)
T ss_pred HHHCCCEEEEEcCCChHHeEE
Confidence 999999999999999999996
No 3
>PLN02513 adenylosuccinate synthase
Probab=100.00 E-value=3.1e-163 Score=1268.11 Aligned_cols=426 Identities=82% Similarity=1.308 Sum_probs=414.4
Q ss_pred CCceEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHH
Q 011288 64 LSQVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPG 143 (489)
Q Consensus 64 ~~~~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~ 143 (489)
|+++++|||+|||||||||||||||+++|+|||||||+||||||+.++|+||+|||||||+|+|+++|+|||||||||+.
T Consensus 1 ~~~~~vVvG~QwGDEGKGKivD~La~~~d~VvR~qGG~NAGHTvv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~ 80 (427)
T PLN02513 1 LSQVSAVLGTQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNDEGKKFALHLVPSGILNEKTTCVIGNGVVVHLPG 80 (427)
T ss_pred CCceEEEEecCccCCCCceeehhhccCCCEEEEcCCcCCCCceEEecCCeEEEEEecCccccCCCcceEECCcEEEcHHH
Confidence 46789999999999999999999999999999999999999999944999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHH
Q 011288 144 LFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFP 223 (489)
Q Consensus 144 L~~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~ 223 (489)
|++||++|+++|++..+||+||+|||||||||+++|+++|.+++.++||||||||||||+||++|.|||++||+|++.|+
T Consensus 81 L~~Ei~~L~~~Gv~~~~rl~Is~rahli~P~H~~~D~~~E~~~g~~~IGTT~rGIGPaY~dK~~R~giR~~Dl~~~~~~~ 160 (427)
T PLN02513 81 LFEEIDGLESNGVSCEGRLLVSDRAHLLFDFHQEVDGLREAELAGSKIGTTKRGIGPAYSSKATRNGLRVGDLRHMDTFA 160 (427)
T ss_pred HHHHHHHHHHcCCCCCCCEEEcCCCCcCChHHHHHHHhhHHhcCCCCcCCCCCCchHhhhhhhhccccchhhhcCHHHHH
Confidence 99999999999998667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCccc
Q 011288 224 QKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVT 303 (489)
Q Consensus 224 ~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~VT 303 (489)
+||+.++++++.++..+..+...+++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||+|||||||||
T Consensus 161 ~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~v~D~~~~l~~al~~gk~iLfEGAQG~lLDid~GtYP~VT 240 (427)
T PLN02513 161 EKLRELLADAAARFEGFEYDASMVEEEVEAYKKFAERLEPFITDTVHYLNEAIQAGKKILVEGAQATMLDIDFGTYPFVT 240 (427)
T ss_pred HHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHhccccccHHHHHHHHHHcCCcEEEEccchhhcccccCcCCccC
Confidence 99999999999999877554445889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHH
Q 011288 304 SSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCC 383 (489)
Q Consensus 304 SSntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlDlv~lrya~ 383 (489)
||||+++++|+|+|++|+.|++||||+|||+||||+||||||++++.++.||+.|+|||+||||||||||||+|++|||+
T Consensus 241 SS~t~a~g~~~g~Gi~p~~i~~ViGV~KAY~TRVG~GPFPTEl~~~~g~~lr~~G~E~GttTGRpRR~GwfD~v~lrya~ 320 (427)
T PLN02513 241 SSNPSAGGICTGLGIAPRKLGDIIGVVKAYTTRVGSGPFPTELFGELGDLLREAGQEFGTTTGRPRRCGWLDIVALKYSC 320 (427)
T ss_pred CCCchHHHHhhccCCCccccceEEEEEEeccccccCCCCCccccchHHHHHhhccCcccCcCCCCceeccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHHH
Q 011288 384 QINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFV 463 (489)
Q Consensus 384 ~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~yi 463 (489)
++||+|+|+|||||||+++++||||++|++++|+.+++||++++.|++|+||||+||||++|++++++|++||++||+||
T Consensus 321 ~ing~t~lalTkLDvL~~~~~ikvc~~Y~~~~g~~~~~~P~~~~~l~~~~Pvye~~~GW~~~~~~~~~~~~LP~~a~~yi 400 (427)
T PLN02513 321 QINGFTSLNLTKLDVLSGLPEIKIGVAYKTPDGKVVKSFPADLDTLEQVEVVYEVLPGWQEDISSVRNYDDLPAAAQAYV 400 (427)
T ss_pred HhcCCCeEEEecceecCCCCeeEEEEEEEcCCCcEeccCCcchhhhccceEEEEEcCCCccccccCcchhhcCHHHHHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEeeCCCccccccC
Q 011288 464 ERIEELVGVPINYIGVGPGRDALIYK 489 (489)
Q Consensus 464 ~~IE~~~gvpi~~isvGP~R~~~i~~ 489 (489)
++||+++|+||.|||+||+|+|||.+
T Consensus 401 ~~IE~~~g~pv~~is~Gp~R~~~i~~ 426 (427)
T PLN02513 401 ERIEELVGVPVHYIGVGPGRDALIVK 426 (427)
T ss_pred HHHHHHHCCCEEEEEcCCCHHHeEec
Confidence 99999999999999999999999974
No 4
>PRK13786 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=1e-162 Score=1262.01 Aligned_cols=419 Identities=44% Similarity=0.747 Sum_probs=407.4
Q ss_pred eEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHH
Q 011288 67 VSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFN 146 (489)
Q Consensus 67 ~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~L~~ 146 (489)
++||||+|||||||||||||||+++|+|||||||+||||||+ ++|+||+|||||||+|+++ +|+|||||||||+.|++
T Consensus 2 ~~vVvG~QwGDEGKGKivD~La~~~d~VvR~qGG~NAGHTVv-~~g~k~~lhliPSGil~~~-~~vIG~GvVidp~~L~~ 79 (424)
T PRK13786 2 FTIITGAQFGDEGKGKIVDLLAKDYDIVARFQGGDNAGHTVK-VGDEVYKLHLIPSGFLLDA-RVLIGPGVVLNPEVLAE 79 (424)
T ss_pred eEEEEecCcCCCCCchhhhhhhcCCCEEEECCCcCCCCcEEE-ECCEEEEEEecCceecCCC-ceEECCCEEEcHHHHHH
Confidence 679999999999999999999999999999999999999999 8999999999999999987 99999999999999999
Q ss_pred HHHHHHHCCCCC-CCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHHHH
Q 011288 147 EIDGLEANGVSC-KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQK 225 (489)
Q Consensus 147 Ei~~L~~~Gi~~-~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~~k 225 (489)
||+.|+++|++. .+||+||+||||+||||+++|+++|..++ ++||||||||||||+||++|.|||++||+|++.|++|
T Consensus 80 Ei~~L~~~Gv~~~~~rL~Is~rahli~P~H~~lD~~~E~~~g-~~IGTT~rGIGPaY~DK~~R~giR~~Dl~~~~~~~~k 158 (424)
T PRK13786 80 EIDMLEKHGVKVDAEKLGIDAKTSIIMPYHIELDGLRESART-EKIGTTKRGIGFAYIDKIARDEVRMSDLVDKERLMRR 158 (424)
T ss_pred HHHHHHHCCCCCCcCcEEEcCCCCcCChHHHHHhhhhHHhcC-CCCCCCCCCchHhHHHHhhCccceeehhcCHHHHHHH
Confidence 999999999986 47999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCC-CCCc-ccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCccc
Q 011288 226 LDLLLSDAAARFPGL-KYTP-DVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVT 303 (489)
Q Consensus 226 L~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~VT 303 (489)
|+.++++++..+..+ +..+ .++++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||+|||||||||
T Consensus 159 l~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~v~Dt~~~l~~al~~gk~vLfEGAQG~lLDid~GtYP~VT 238 (424)
T PRK13786 159 LEELAPQKEKEIKELGGDPSIVRDEALIDKYLELGRQLAPYITDVSYEINKALDEGKSVLAEGAQGTHLDVIHGTQKFVT 238 (424)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhccccCHHHHHHHHHHcCCcEEEEecchhhhccccCcCCccc
Confidence 999999999888764 3333 46789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHH
Q 011288 304 SSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCC 383 (489)
Q Consensus 304 SSntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlDlv~lrya~ 383 (489)
||||+++++|+|+|++|..|++||||+|||+||||+||||||++++.|+.||+.|+|||+||||||||||||+|++|||+
T Consensus 239 SSntta~ga~~g~Gi~p~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~lr~~G~E~GttTGRpRR~GwlD~v~lrya~ 318 (424)
T PRK13786 239 SSSTIAGSACANLGVGPTRVDNVLGIVKAYITRVGEGPLPTELKDEAGEHLQDVGGEFGTTTGRPRRCGWFDLPLLKKAI 318 (424)
T ss_pred cCCcchhhhhhccCCCccccceEEEEEEeecccccCCCCCcccchHHHHHHhhccCcccCcCCCCcccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHHH
Q 011288 384 QINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFV 463 (489)
Q Consensus 384 ~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~yi 463 (489)
++||+|+|||||||||+++++||||++|++ +|+.+++||++++.|++|+||||+||||++|+++||+|++||++||+||
T Consensus 319 ~ing~t~lalTkLDvL~~~~~ikvc~~Y~~-~g~~~~~~p~~~~~l~~~~PvYe~~~GW~~~~~~~~~~~~LP~~a~~yi 397 (424)
T PRK13786 319 YLNGYTEIALTKLDVLTGLDPIKICVGYEL-DGEILDYPPELTSDLARCVPVYEELEGWSTDLTEVKAYEDLPENARNYV 397 (424)
T ss_pred HHcCCCeEEeeCccccCCCCceeEEEEEee-CCEEcccCCcChhhhcccEEEEEecCCCccccccCcchhhcCHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEeeCCCccccccC
Q 011288 464 ERIEELVGVPINYIGVGPGRDALIYK 489 (489)
Q Consensus 464 ~~IE~~~gvpi~~isvGP~R~~~i~~ 489 (489)
++||+++|+||.|||+||+|+|||.+
T Consensus 398 ~~iE~~~gvpv~~is~Gp~R~~~I~~ 423 (424)
T PRK13786 398 ERLEELMGVPIKYISVGPGREQTFKK 423 (424)
T ss_pred HHHHHHHCCCEEEEEcCCCHHHhhcc
Confidence 99999999999999999999999975
No 5
>PRK13787 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=2.7e-162 Score=1258.56 Aligned_cols=419 Identities=43% Similarity=0.816 Sum_probs=407.5
Q ss_pred ceEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHH
Q 011288 66 QVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLF 145 (489)
Q Consensus 66 ~~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~L~ 145 (489)
+.++|||+|||||||||||||||+++|+|||||||+||||||+ ++|+||+|||||||+|+|+++|+|||||||||+.|+
T Consensus 2 ~~~vVvG~QwGDEGKGKivD~La~~~d~VvR~~GG~NAGHTVv-~~g~k~~lhliPSGil~~~~~~vIG~GvVi~p~~L~ 80 (423)
T PRK13787 2 PASLVVGTQWGDEGKAKVIDFLSKDTDIIVRYQGGANAGHTVV-VHGKKYVFHLVPSGVIYDQTICVIGNGVVLDPLFFI 80 (423)
T ss_pred CcEEEEeCCcCCCCCchhhhhhcccCCEEEECCCcCCCCcEEE-ECCEEEEEEecCccccCCCccEEecCcEEECHHHHH
Confidence 3579999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHh-cCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHHH
Q 011288 146 NEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAEL-AKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQ 224 (489)
Q Consensus 146 ~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~r-g~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~~ 224 (489)
+||+.|+++|++..+||+||+||||+||||+++|+++|.++ +.++||||||||||||+||++|.|||++||+|+ .|++
T Consensus 81 ~Ei~~L~~~Gv~~~~rl~Is~rahli~P~H~~lD~~~E~~~~g~~~IGTT~rGIGPaY~dK~~R~giR~~Dl~~~-~~~~ 159 (423)
T PRK13787 81 EECDRLQKEGFPVKDKLLLSDACHLLFPYHSQIDSARETTSSQEHKIGTTKKGIGICYADKMMRTGLRVGDLLDK-SYKR 159 (423)
T ss_pred HHHHHHHHcCCCCcCCEEEeCCccCcCchHHHHhhhhHHhhcCCCccCCCCCCchHhhhhhhhcccccHHHhcCH-HHHH
Confidence 99999999999876799999999999999999999999999 788999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhccC-CCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCccc
Q 011288 225 KLDLLLSDAAARFPG-LKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVT 303 (489)
Q Consensus 225 kL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~VT 303 (489)
||+.++++++..+.. ++..+.++++++++|.+++++|+|||+|+..+|++|+++||+||||||||+|||+|||||||||
T Consensus 160 kl~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~a~~~gk~vLfEGAQG~lLDid~GtYPyVT 239 (423)
T PRK13787 160 RLKHLVDEKNRELDKLYGMPPVSYNDINDGLKFFLSKVGKNIINTAYYLDTELKKGKRVLLEGAQGTGLDVDFGTYPYVT 239 (423)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHCCCeEEEEechhhhhhcccCcCCCcC
Confidence 999999999988776 4555677899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHH
Q 011288 304 SSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCC 383 (489)
Q Consensus 304 SSntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlDlv~lrya~ 383 (489)
||||+++|+|+|+|++|+.|++||||+|||+||||+||||||++++.++.||+.|+|||+||||||||||||+|+||||+
T Consensus 240 SSnt~agga~~g~Gi~p~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~lr~~G~E~G~tTGRpRR~GWlD~v~lrya~ 319 (423)
T PRK13787 240 SSNPTTGGALIGTGISFQHLKHVIGITKAYTTRVGEGPFPTELLGEAGEVLRQKGGEFGATTGRPRRCGWFDVEMLKHSV 319 (423)
T ss_pred CCCchhhhhhhccCCCccccceEEEEEEeccccccCCCCCccccchHHHHHHhhcCccCCccCCCceeecchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHHH
Q 011288 384 QINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFV 463 (489)
Q Consensus 384 ~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~yi 463 (489)
++||+|+|+||||||||++++||||++|++ +|+++++||++ .|++|+||||+||||++|+++||+|++||++||+||
T Consensus 320 ~ing~t~lalTkLDvL~~~~~ikvc~~Y~~-~G~~~~~~P~~--~l~~~~PvYe~~~GW~~~~~~~~~~~~LP~~a~~yi 396 (423)
T PRK13787 320 RINGITSIALTKIDILSDYDTIPVAVGYKL-NGKTLDCFPSQ--GLEKVEPLYEEFPGWKDDISGINEFQKLPEKCKNYI 396 (423)
T ss_pred HhcCCceEEEecccccCCCCceeEEEEEee-CCeEeccCChh--hhcCceEEEEECCCCccccccCCchhhcCHHHHHHH
Confidence 999999999999999999999999999999 99999999996 899999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEeeCCCccccccC
Q 011288 464 ERIEELVGVPINYIGVGPGRDALIYK 489 (489)
Q Consensus 464 ~~IE~~~gvpi~~isvGP~R~~~i~~ 489 (489)
++||+++|+||.|||+||+|+|||..
T Consensus 397 ~~iE~~~g~pi~~is~Gp~R~~~I~~ 422 (423)
T PRK13787 397 SALEKWIGVKINLVSTGPDRKDTIIG 422 (423)
T ss_pred HHHHHHHCCCEEEEEcCCChhheEec
Confidence 99999999999999999999999863
No 6
>PTZ00350 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=2.9e-161 Score=1255.90 Aligned_cols=427 Identities=55% Similarity=0.957 Sum_probs=413.9
Q ss_pred CCccccccCCceEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecC
Q 011288 56 ELPSQIESLSQVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGN 135 (489)
Q Consensus 56 ~~~~~~~~~~~~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~ 135 (489)
+|++ .-.+++++|||+|||||||||||||||+++|+|||||||+||||||+ ++|+||+|||||||+|+|+++|+|||
T Consensus 5 ~~~~--~~~~~~~vVvG~qwGDEGKGKivD~La~~~d~VvR~qGG~NAGHTVv-~~g~k~~lhliPSGil~~~~~~vIG~ 81 (436)
T PTZ00350 5 DSLN--GLKSKVVVILGAQWGDEGKGKLVDILSEKADIVARFNGGANAGHTIV-VDGKKYALHLLPCGILYPNCINVLGN 81 (436)
T ss_pred eecc--CCCCceEEEEecCcCCCCCchhhhhhccCCCEEEEeCCcCCCCcEEE-ECCEEEEEEeCCccccCCCcceEECC
Confidence 3444 56778999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred CeEechHHHHHHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHh--cCCCCCCCCCcchhhhccccccCCCeE
Q 011288 136 GVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAEL--AKSFIGTTRRGIGPAYSSKVIRNGIRV 213 (489)
Q Consensus 136 GvVvdp~~L~~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~r--g~~~iGTTgrGIGpay~dk~~R~giRv 213 (489)
||||||+.|++||+.|+++|+++.+||+||+|||||||||+++|+++|.++ +.++||||||||||||+||++|.|||+
T Consensus 82 GvVidp~~L~~Ei~~L~~~Gv~~~~rL~Is~rahli~P~H~~lD~~~E~~~~~g~~~iGTT~rGIGPaY~dk~~R~giR~ 161 (436)
T PTZ00350 82 GVVIHLPSLLEEIEQLTKKGINLLGRLYISDRAHLVFDLHQAIDGIQESEKGKGGTQIGTTKRGIGPCYSTKASRTGLRV 161 (436)
T ss_pred cEEEcHHHHHHHHHHHHHcCCCCCCCEEEcCCCCcCChHHHHHHhhhhhhhhcCCCCcCCCCCCchHhhhhhhhccccch
Confidence 999999999999999999999877899999999999999999999999984 888999999999999999999999999
Q ss_pred eeCCCCCcHHHHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhc
Q 011288 214 CDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLD 293 (489)
Q Consensus 214 ~DL~~~~~l~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLD 293 (489)
+||+|++.|++||+.++++++..+..+ +.++++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||
T Consensus 162 ~Dl~~~~~~~~kl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~p~v~D~~~~l~~al~~gk~vLfEGAQG~lLD 238 (436)
T PTZ00350 162 GDLLNFETFEKKYRKLVEKLQEQYNIE---EYDAEEELERYKGYAEKLKDMIVDTVYFMNKAIKEGKRVLVEGANATMLD 238 (436)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHhccc---CCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHCCCcEEEEechhhhhh
Confidence 999999999999999999999887765 35689999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccCCCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCcccc
Q 011288 294 IDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGW 373 (489)
Q Consensus 294 id~GtYP~VTSSntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~Gw 373 (489)
+|||||||||||||+++++|+|+|++|+.|++||||+|||+||||+||||||++++.++.||+.|+|||+||||||||||
T Consensus 239 id~GtYPfVTSSnt~a~ga~~g~Gi~p~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~lr~~g~E~GttTGRpRR~Gw 318 (436)
T PTZ00350 239 IDFGTYPYVTSSNTTVGGVCTGLGIPPNAIILVIGVVKAYTTRVGEGPFPTELFDENGDYLRKKGHEYGTTTGRPRRCGW 318 (436)
T ss_pred cccCcCCCcCCCCchhhhhhhccCCCccccceEEEEEEeccccccCCCCCCcCchHHHHHHHhccCcccCcCCCCceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCcceEeeecccccCCCCCcEEEeeeecCCCcc--cccCCcChhhhccCeEEEEEcCCcccccccccC
Q 011288 374 LDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTP--VKSFPADLLLLEQLKVEYEVLPGWQSDISSVRN 451 (489)
Q Consensus 374 lDlv~lrya~~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~--~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~ 451 (489)
||+|++|||+++||+|+|+|||||||+++++||||++|++ +|+. +++||+++..|++|+||||+||||++|+++|++
T Consensus 319 ~D~v~lrya~~ing~t~lalTkLDvL~~~~~ikvc~~Y~~-~g~~~~~~~~p~~~~~l~~~~Pvye~~~GW~~~~~~~r~ 397 (436)
T PTZ00350 319 LDIPALRYVQMINGFDSINLTKLDVLSGLKEIKICVNYKN-KGTGLEIGRYPSSIEELEEYEPVYETMPGWKTDISKCKT 397 (436)
T ss_pred chHHHHHHHHHhcCCCeEEEecccccCCCCceEEEEEEEe-CCEEeccccCCCChhHHhccEEEEEEcCCCccccccCcc
Confidence 9999999999999999999999999999999999999999 9998 899999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCeEEEeeCCCccccccC
Q 011288 452 YSDLPKGAREFVERIEELVGVPINYIGVGPGRDALIYK 489 (489)
Q Consensus 452 ~~~LP~~a~~yi~~IE~~~gvpi~~isvGP~R~~~i~~ 489 (489)
|++||++|++||++||+++|+||.|||+||+|+|||.+
T Consensus 398 ~~~LP~~a~~yi~~iE~~~g~pV~~is~Gp~R~~~I~~ 435 (436)
T PTZ00350 398 FEELPENAQKYVLFIEELLGVPIVWIGVGPNRENMIVK 435 (436)
T ss_pred hhhcCHHHHHHHHHHHHHHCCCEEEEEcCCCHHHeEec
Confidence 99999999999999999999999999999999999975
No 7
>PRK13784 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=8.9e-161 Score=1248.65 Aligned_cols=417 Identities=39% Similarity=0.722 Sum_probs=404.2
Q ss_pred ceEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHH
Q 011288 66 QVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLF 145 (489)
Q Consensus 66 ~~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~L~ 145 (489)
+.++|||+|||||||||||||||+++|+|||||||+||||||+ ++|+||+|||||||+|+|+++|+|||||||||+.|+
T Consensus 2 ~~~vVvG~QwGDEGKGKivD~La~~~d~VvR~qGG~NAGHTvv-~~g~k~~lhliPSGil~~~~~~vIG~GvVi~p~~L~ 80 (428)
T PRK13784 2 SNIVIVGAQWGDEGKGKIADTLAEKADLVVRYQGGNNAGHTLV-VNGKKTFLHLIPSGVLHQHTKCVIGHGVVLDPVALD 80 (428)
T ss_pred CcEEEEeCCcCCCCcchhhhhhcccCCEEEEeCCcCCcCcEEE-ECCEEEEEeecCceecCCCceEEECCcEEEcHHHHH
Confidence 3579999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCC-CCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHHH
Q 011288 146 NEIDGLEANGVSC-KGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQ 224 (489)
Q Consensus 146 ~Ei~~L~~~Gi~~-~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~~ 224 (489)
+||+.|+++|++. .+||+||+||||+||||+++|+++|..++ ++||||||||||||+||++|.|||++||+|++.|++
T Consensus 81 ~Ei~~L~~~Gv~~~~~rL~Is~rahli~p~H~~lD~~~E~~~~-~~IGTT~rGIGPaY~dK~~R~giR~~Dl~~~~~~~~ 159 (428)
T PRK13784 81 EEITRLQAKGIAISAENLFVSESCTIITSYHKLLDAVRESNTS-EKIGTTGKGIGPAYEDKVSRKGIKFKHLFDKDLLRS 159 (428)
T ss_pred HHHHHHHhcCCCCCCCCEEEcCCCCcCChHHHHHhhhhHHhcC-CCCCCCCCcchHhHHHHHhcccchhhhhcCHHHHHH
Confidence 9999999999986 47999999999999999999999999887 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCC-CCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCccc
Q 011288 225 KLDLLLSDAAARFPGL-KYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVT 303 (489)
Q Consensus 225 kL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~VT 303 (489)
||+.+++++|..+..+ +..+.++++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||+|||||||||
T Consensus 160 kl~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~v~Dt~~~l~~a~~~gk~vLfEGAQG~lLDid~GTYPyVT 239 (428)
T PRK13784 160 RLAISLAEKETLFRDLYKVEYPTLEQEFDKLFALGQKLKQYAADTFSIIDQAIAAGKNVVYEGAQGVLLDVDYGTYPFVT 239 (428)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHcCCcEEEEeccceeeccccCcCCccc
Confidence 9999999999888864 445677899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHH
Q 011288 304 SSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCC 383 (489)
Q Consensus 304 SSntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlDlv~lrya~ 383 (489)
||||+++++|+|+|++|+.|++||||+|||+||||+||||||++++.++.||+.|+|||+||||||||||||+|+||||+
T Consensus 240 SSntta~ga~~g~Gi~p~~i~~ViGV~KAYtTRVG~GPFpTEl~~e~g~~lr~~G~E~GttTGRpRR~GWlD~v~lrya~ 319 (428)
T PRK13784 240 SSNTSVAGVYSGATTAGHGLDHVIGITKAYTTRVGEGPFPTELFDDVGKFIQHKGGEIGVTTGRIRRCGWLDLPLLKYSA 319 (428)
T ss_pred CCCcchhhhhhccCCCCcccceEEEEEEeccccccCCCCCcccchHHHHHHHHcCceecccCCCCcccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcceEeeecccccCCCCCcEEEeeeecCCCccccc-CCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHH
Q 011288 384 QINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKS-FPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREF 462 (489)
Q Consensus 384 ~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~-~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~y 462 (489)
++||+|+|||||||||+++++||||++|++ +|+.+++ || +. .+++|+||||+||||+ +++|++|++||++||+|
T Consensus 320 ~ing~t~lalTkLDvL~~~~~ikic~~Y~~-~g~~~~~~~P-~~-~~~~~~pvYe~~~GW~--~~~~~~~~~LP~~a~~Y 394 (428)
T PRK13784 320 KCSNLTSIALTKVDVLSDMDTLKVCIGYKY-EGKEIYCAYP-GI-DLYKVEPILVEMEPFS--IDETVTKDNMPAALKTY 394 (428)
T ss_pred HhcCCCeEEEecccccCCCCcceEEEEEEe-CCEEecccCC-hh-hhccceEEEEecCCcc--ccCcCchHHcCHHHHHH
Confidence 999999999999999999999999999999 9999987 99 55 8999999999999999 99999999999999999
Q ss_pred HHHHHHHhCCCeEEEeeCCCccccccC
Q 011288 463 VERIEELVGVPINYIGVGPGRDALIYK 489 (489)
Q Consensus 463 i~~IE~~~gvpi~~isvGP~R~~~i~~ 489 (489)
|++||+++|+||.|||+||+|+|||.+
T Consensus 395 i~~iE~~~g~pi~~is~Gp~R~~~I~~ 421 (428)
T PRK13784 395 LKTIENHVGIPISSLAYGPSREQILFF 421 (428)
T ss_pred HHHHHHHHCCCEEEEECCCChHHEEEe
Confidence 999999999999999999999999864
No 8
>PRK01117 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=1.7e-160 Score=1250.78 Aligned_cols=421 Identities=52% Similarity=0.897 Sum_probs=411.3
Q ss_pred ceEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHH
Q 011288 66 QVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLF 145 (489)
Q Consensus 66 ~~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~L~ 145 (489)
+.++|||+|||||||||||||||+++|+|||||||+||||||+ .+|+||+|||||||+|+|+++|+|||||||||+.|+
T Consensus 2 ~~~vVvG~qwGDEGKGKivD~La~~~d~VvR~~GG~NAGHTVv-~~g~k~~lhllPSGil~~~~~~viG~GvVv~p~~L~ 80 (430)
T PRK01117 2 KNVVVVGTQWGDEGKGKIVDLLSERADVVVRFQGGHNAGHTLV-IDGKKYKLHLIPSGILRPGKTCVIGNGVVLDPEALL 80 (430)
T ss_pred CcEEEEecccCCCCCceeeeeecccCCEEEEcCCcCCCCcEEE-ECCEEEEEEecCccccCCCccEEECCeEEECHHHHH
Confidence 4679999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHHHH
Q 011288 146 NEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQK 225 (489)
Q Consensus 146 ~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~~k 225 (489)
+||+.|+++|++..+||+||+||||+||||+++|+++|.+++.++||||||||||||+||++|.|||++||+|++.|++|
T Consensus 81 ~Ei~~l~~~g~~~~~rL~Is~ra~li~p~H~~lD~~~E~~rg~~~iGTT~rGIGpay~dk~~R~gir~~Dl~~~~~l~~k 160 (430)
T PRK01117 81 KEIDELEARGVDVRERLRISERAHLILPYHRALDKAREKARGKKKIGTTGRGIGPAYEDKVARRGIRVGDLLDPETFAEK 160 (430)
T ss_pred HHHHHHHHcCCCCCCCEEEeCCCCCCCchHHHHhhhhHHhcCCCCCCCCCCCchHHHHHhhhcccccHHHhcCHHHHHHH
Confidence 99999999999866899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccC-CCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCcccC
Q 011288 226 LDLLLSDAAARFPG-LKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTS 304 (489)
Q Consensus 226 L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~VTS 304 (489)
|+.++++++..++. ++..+.++++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||+||||||||||
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~lLDid~GtYP~VTS 240 (430)
T PRK01117 161 LEENLEYKNFLLTKYYGAEAVDFEEILDEYLEYAERLKPYVTDTSLLLNDALKAGKRVLFEGAQGTLLDIDHGTYPFVTS 240 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHCCCeEEEEechhhhhccccCcCCCcCC
Confidence 99999999988876 45556778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHH
Q 011288 305 SSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQ 384 (489)
Q Consensus 305 Sntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlDlv~lrya~~ 384 (489)
|||+++++|+|+|++|+.|++||||+|||+||||+||||||++++.++.||+.|+|||+||||||||||||+|+||||++
T Consensus 241 S~tt~~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPFpTEl~~e~g~~lr~~g~E~GttTGRpRR~GwlD~v~lrya~~ 320 (430)
T PRK01117 241 SNTTAGGAATGSGVGPTKIDYVLGIAKAYTTRVGSGPFPTELFDEVGEHLRERGHEFGTTTGRPRRCGWFDAVALRYAVR 320 (430)
T ss_pred cCchhhhhhhccCCCCcccceEEEEEEcCCCcccCCCCCCcCChHHHHHHhhccCeecccCCCcceeecchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHHHH
Q 011288 385 INGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVE 464 (489)
Q Consensus 385 ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~yi~ 464 (489)
+||+|+|+|||||||+++++||||++|++ +|+++++||+++..|++|+|||++||||++|+++||+|++||++||+||+
T Consensus 321 ing~~~lalTkLDvL~~~~~ikic~~Y~~-~g~~~~~~P~~~~~l~~~~Pvye~~~GW~~~~~~~r~~~~LP~~a~~yi~ 399 (430)
T PRK01117 321 VNGLTGLALTKLDVLDGLEEIKICVAYEL-DGKRIDYFPASLEDLARCEPIYEELPGWSESTTGVRSFDDLPENARKYIK 399 (430)
T ss_pred hcCCCeEEEeCceecCCCCceeEEEEEee-CCEEeeeCCCChhhhcccEEEEEECCCCccccccCcchhhcCHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEeeCCCcccccc
Q 011288 465 RIEELVGVPINYIGVGPGRDALIY 488 (489)
Q Consensus 465 ~IE~~~gvpi~~isvGP~R~~~i~ 488 (489)
+||+++|+||.|||+||+|+|||.
T Consensus 400 ~iE~~~g~pv~~is~Gp~r~~~I~ 423 (430)
T PRK01117 400 RIEELTGVPISIISTGPDRDQTII 423 (430)
T ss_pred HHHHHHCCCEEEEEcCCChHHEEE
Confidence 999999999999999999999986
No 9
>smart00788 Adenylsucc_synt Adenylosuccinate synthetase. Adenylosuccinate synthetase plays an important role in purine biosynthesis, by catalyzing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterized from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present - one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Furt
Probab=100.00 E-value=9.4e-160 Score=1243.53 Aligned_cols=420 Identities=55% Similarity=0.936 Sum_probs=410.8
Q ss_pred eEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHH
Q 011288 67 VSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFN 146 (489)
Q Consensus 67 ~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~L~~ 146 (489)
+++|||+|||||||||||||||+++|+|||||||+||||||+ ++|+||+|||||||+|+|+++|+||+||||||+.|++
T Consensus 1 ~~vVvG~qwGDEGKGKivD~La~~~d~VvR~~GG~NAGHTvv-~~g~k~~lhllPSGil~~~~~~vig~GvVv~p~~L~~ 79 (421)
T smart00788 1 VVVVVGAQWGDEGKGKIVDYLAEKADVVVRFQGGNNAGHTVV-VGGKKYKLHLLPSGILNPNKKCVIGNGVVIDPEALFK 79 (421)
T ss_pred CEEEEecccCCCCCceeeeeccccCCEEEEccccCCCCcEEE-ECCEEEEEEecCccccCCCceEEECCcEEEcHHHHHH
Confidence 368999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHHHHH
Q 011288 147 EIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKL 226 (489)
Q Consensus 147 Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~~kL 226 (489)
||+.|+++|+++.+||+||+||||+||||+++|+++|.+++..+||||||||||||+||++|.|||++||+|++.|++||
T Consensus 80 Ei~~L~~~Gi~~~~rL~Is~ra~li~p~H~~lD~~~E~~~g~~~iGTT~rGIGpay~dk~~R~gir~~Dl~~~~~~~~kl 159 (421)
T smart00788 80 EIDQLEAKGVDVRDRLFISDRAHLILPYHIALDKLREKARGKKKIGTTGRGIGPAYEDKVARRGIRVGDLFDEDVFREKL 159 (421)
T ss_pred HHHHHHHcCCCCCCCEEEcCCCCCCChHHHHHhhhhHHhcCCCCCCCCCCCcHHHHHHHhhccCcchhhhcCHHHHHHHH
Confidence 99999999998778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCC-CCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCcccCC
Q 011288 227 DLLLSDAAARFPGL-KYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSS 305 (489)
Q Consensus 227 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~VTSS 305 (489)
+.++++++..++.+ +.++.++++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||+|||||||||||
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~lLDid~GtYP~VTSS 239 (421)
T smart00788 160 EELLDYKNFLLKKLYGAEPVDVEEILEELLEYAERLKPYVVDVSELLNDALKAGKKVLFEGAQGTLLDIDHGTYPYVTSS 239 (421)
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhccceecHHHHHHHHHHCCCeEEEEeCcHhhhccccCcCCCccCc
Confidence 99999999888864 55667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHh
Q 011288 306 SPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQI 385 (489)
Q Consensus 306 ntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlDlv~lrya~~i 385 (489)
||+++++|+|+|++|+.|++||||+|||+||||+||||||++++.++.||+.|+|||+||||||||||||+|++|||+++
T Consensus 240 nt~~~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPFpTEl~~e~g~~lr~~g~E~GttTGRpRR~GwlD~v~lrya~~i 319 (421)
T smart00788 240 NTTAGGAATGAGIGPTRIDYVIGVVKAYTTRVGEGPFPTELFDETGEKLRERGHEFGTTTGRPRRCGWFDAVLLRYAVRI 319 (421)
T ss_pred cchhhhhhhccCCCccccceEEEEEEeccccccCCCCCcccChHHHHHHhhcCCeeccCCCCCcccccchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHHHHH
Q 011288 386 NGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVER 465 (489)
Q Consensus 386 ng~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~yi~~ 465 (489)
||+|+|+|||||||+++++||||++|++ +|+++++||.+++.|++|+|||++||||++|+++|++|++||++|++||++
T Consensus 320 ng~~~lalTkLDvL~~~~~ikvc~~Y~~-~g~~~~~~P~~~~~l~~~~PvY~~~~GW~~~~~~~~~~~~LP~~a~~yi~~ 398 (421)
T smart00788 320 NGITGLALTKLDVLDGLDEIKVCVAYKL-DGKEIDYFPADLEDLERCEPIYETLPGWKEDTTGVRSYEDLPENAKKYIER 398 (421)
T ss_pred cCCCeEEEECceecCCCCceeEEEEEec-CCEEEeeCCCChhhhcccEEEEEECCCCccccccccchhhcCHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEeeCCCcccccc
Q 011288 466 IEELVGVPINYIGVGPGRDALIY 488 (489)
Q Consensus 466 IE~~~gvpi~~isvGP~R~~~i~ 488 (489)
||+++|+||+|||+||+|+|||.
T Consensus 399 iE~~~g~pv~~is~Gp~r~~~i~ 421 (421)
T smart00788 399 IEELVGVPVSLISTGPDREQTIV 421 (421)
T ss_pred HHHHHCCCEEEEEcCCCHHhhcC
Confidence 99999999999999999999984
No 10
>PRK13785 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=3e-158 Score=1235.68 Aligned_cols=419 Identities=39% Similarity=0.732 Sum_probs=404.3
Q ss_pred ceEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHH
Q 011288 66 QVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLF 145 (489)
Q Consensus 66 ~~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~L~ 145 (489)
++++|||+|||||||||||||||+++|+|||||||+||||||+ ++|+||+|||||||+|++ +.|+|||||||||+.|+
T Consensus 1 ~~~vVvG~QwGDEGKGKivD~La~~~dvVvR~~GG~NAGHTVv-~~g~k~~lhliPSGil~~-~~~vIG~GvVvdp~~L~ 78 (454)
T PRK13785 1 MTVTIVGSQLGDEGKGGVVDLYGDAADVVVRYQGGDNAGHTVV-HGGEEYKLSLVPSGAVRG-KIGVLGNGCVVNPETLF 78 (454)
T ss_pred CcEEEEccCcCCCCCceeeeecccCCCEEEEcCCcCCcCcEEE-ECCEEEEEeecCCCccCC-CceEECCcEEEcHHHHH
Confidence 3579999999999999999999999999999999999999999 899999999999999996 89999999999999999
Q ss_pred HHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHh--cCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHH
Q 011288 146 NEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAEL--AKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFP 223 (489)
Q Consensus 146 ~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~r--g~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~ 223 (489)
+||+.|+++|++. ||+||+|||||||||+++|+++|..| +.++||||||||||||+||++|.|||++||+|++.|+
T Consensus 79 ~Ei~~L~~~Gv~~--~l~Is~rahli~P~H~~lD~~~E~~r~~g~~~IGTT~rGIGPaY~DK~~R~giR~~Dl~~~~~~~ 156 (454)
T PRK13785 79 DEIDALRERGLDP--DVRVAERAHVILPYHRVLDGIEEEAKSDSDLEVGTTGRGIGPTYEDKAGRRGVRVGDLLDPDVLR 156 (454)
T ss_pred HHHHHHHhcCCCc--cEEEeCCCcccCHhHHhhhHHhHHhhccCCCccCCCCCCchhhhhhhhhccccchhhhcCHHHHH
Confidence 9999999999984 99999999999999999999999998 5789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCC-CC------CcccHHHHHHHHHHHHHHhCC--CccChHHHHHHHHHCCCcEEEEeccchhhcc
Q 011288 224 QKLDLLLSDAAARFPGL-KY------TPDVLREEVEKYKRFAERLEP--FITDTVHFMNESIAQKRKILVEGGQATMLDI 294 (489)
Q Consensus 224 ~kL~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~l~~--~v~D~~~~l~~al~~gk~vLfEGAQG~LLDi 294 (489)
+||+.++++++..+..+ +. .+.++++++++|.+++++|+| ||+|+..+|++++++||+||||||||+|||+
T Consensus 157 ~kl~~~~~~~n~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~d~~~~l~~a~~~gk~vLfEGAQG~lLDi 236 (454)
T PRK13785 157 DRLEYVVPQKRALAEDVYGLDASETPEAFDVDALFEEYREYGERLAEEDMTVNAGDFLAERIDDGDNVMLEGAQGTSIDI 236 (454)
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccCCCHHHHHHHHHHHHHHhCccceeccHHHHHHHHHHcCCeEEEEecchhhhcc
Confidence 99999999999888753 32 146789999999999999999 9999999999999999999999999999999
Q ss_pred cCCCCCcccCCCCcccccccccCCCCcccCe--EEEEEeecccccccCCCCCccCC---------------Cccchhhhc
Q 011288 295 DFGTYPFVTSSSPSAGGICTGLGIAPRVVGD--LIGVVKAYTTRVGSGPFPTEIFG---------------QGGDRLRLA 357 (489)
Q Consensus 295 d~GtYP~VTSSntta~g~~~g~Gi~p~~i~~--viGV~KAY~TRVG~GPfPTEl~~---------------~~g~~lr~~ 357 (489)
|||||||||||||+++++|+|+|++|+.|++ ||||+|||+||||+||||||+++ ++++.||+.
T Consensus 237 d~GtYPyVTSSnt~a~ga~~g~Gi~p~~i~~~~ViGV~KAY~TRVG~GPFPTEl~~~~~~~~~~~~~~~~~e~g~~lr~~ 316 (454)
T PRK13785 237 DHGNYPYVTSSNPTAGGAATGTGLGPTVVGQGEVVGIVKAYLSRVGSGPLPTELGGVEGDTPDEGGRPDEEELATYIREE 316 (454)
T ss_pred ccCcCCccCCCCchhhhhhhccCCCcccccCceEEEEEEeecccccCCCCCcccccccccccccccccchHHHHHHHhhc
Confidence 9999999999999999999999999999976 99999999999999999999998 889999999
Q ss_pred cCCCCCCCCCCCccccchHHHHHHHHHhcCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEE
Q 011288 358 GQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYE 437 (489)
Q Consensus 358 g~E~GttTGRpRR~GwlDlv~lrya~~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~ 437 (489)
|+|||+||||||||||||+|++|||+++||+|+|+|||||||+++++||||++|++ +|+++++||++.+.|++|+||||
T Consensus 317 G~E~GttTGRpRR~GWlD~v~lryA~~inG~t~lalTkLDvL~~~~~ikvc~~Y~~-~g~~~~~~P~~~~~l~~~~PvYe 395 (454)
T PRK13785 317 GGEYGTVTGRPRRVGWLDMPMLRHAARASGFTGLAINHIDVLAGLDEVKVGHSYEL-DGEELLTMPATTERWARCEPNFR 395 (454)
T ss_pred CCcccccCCCCcccccchHHHHHHHHHhcCCCeEEEecccccCCCCceeEEEEEee-CCEEcccCCCChhhhcccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred EcCCccc-ccccccC--CCCCcHHHHHHHHHHHHHhCCCeEEEeeCCCccccccC
Q 011288 438 VLPGWQS-DISSVRN--YSDLPKGAREFVERIEELVGVPINYIGVGPGRDALIYK 489 (489)
Q Consensus 438 ~~~GW~~-di~~~~~--~~~LP~~a~~yi~~IE~~~gvpi~~isvGP~R~~~i~~ 489 (489)
+||||++ +++++++ |++||++||+||++||+++|+||.|||+||+|+|||.+
T Consensus 396 ~~~GW~~~~~~~~~~~~~~~LP~~a~~yi~~iE~~~g~pv~~is~Gp~R~~~i~~ 450 (454)
T PRK13785 396 SFDGWPEVDWAAVAEEGYDALPENARTYLEYVSDELDTPIYAVGVGPGREETVVL 450 (454)
T ss_pred ecCCcCcCcccccccCChhhcCHHHHHHHHHHHHHHCCCEEEEEcCCCHHHeEec
Confidence 9999999 8999988 99999999999999999999999999999999999864
No 11
>PF00709 Adenylsucc_synt: Adenylosuccinate synthetase; InterPro: IPR001114 Adenylosuccinate synthetase (6.3.4.4 from EC) plays an important role in purine biosynthesis, by catalysing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterised from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present: one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Further, it has been suggested that the similarities in the GTP-binding domains of the synthetase and the p21ras protein are an example of convergent evolution of two distinct families of GTP-binding proteins []. Structures of adenylosuccinate synthetase from Triticum aestivum and Arabidopsis thaliana when compared with the known structures from E. coli reveals that the overall fold is very similar to that of the E. coli protein [].; GO: 0000287 magnesium ion binding, 0004019 adenylosuccinate synthase activity, 0005525 GTP binding, 0006164 purine nucleotide biosynthetic process, 0005737 cytoplasm; PDB: 3HID_A 1DJ3_B 2D7U_A 1DJ2_A 1P9B_A 1LON_A 1MF0_A 1LOO_A 1LNY_B 2DGN_A ....
Probab=100.00 E-value=1.3e-158 Score=1237.64 Aligned_cols=420 Identities=55% Similarity=0.940 Sum_probs=383.5
Q ss_pred eEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHH
Q 011288 67 VSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFN 146 (489)
Q Consensus 67 ~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~L~~ 146 (489)
+++|||+|||||||||||||||+++|+|||||||+||||||+ .+|+||+|||||||+|+|+++|+||+|||+||+.|++
T Consensus 1 ~~vVvG~qwGDEGKGkivD~La~~~d~VvR~~GG~NAGHTVv-~~g~~~~~hliPSGi~~~~~~~~ig~GvVidp~~l~~ 79 (421)
T PF00709_consen 1 VIVVVGLQWGDEGKGKIVDYLAEDADVVVRFNGGANAGHTVV-VDGKKFVFHLIPSGILHPGVKTVIGNGVVIDPEALLE 79 (421)
T ss_dssp EEEEEESSSS-SSHHHHHHHHHTT-SEEEESSBSTTSSEEEE-ETTEEEEESSS-GGGGSTTSEEEE-TTBEEEHHHHHH
T ss_pred CEEEEcCCcccCCCceeehhhcCccCEEEEecCCCCCCCEEE-ECCEEEEEeecceeeecCCceEeecCCEEECHHHHHH
Confidence 579999999999999999999999999999999999999999 8899999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHHHHH
Q 011288 147 EIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKL 226 (489)
Q Consensus 147 Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~~kL 226 (489)
||++|+++|++..+||+||+||||+||||+++|+++|.+++.++||||||||||||+||++|.|||++||+|++.|++||
T Consensus 80 Ei~~L~~~g~~~~~rl~Is~rahiv~p~H~~lD~~~E~~~g~~~iGTTgrGIGp~y~dk~~R~gir~~DL~~~~~l~~kl 159 (421)
T PF00709_consen 80 EIEELESKGVDVRSRLFISDRAHIVTPYHKALDRLREEARGKGKIGTTGRGIGPAYADKVARRGIRVGDLLDPEVLREKL 159 (421)
T ss_dssp HHHHHHCTTGTHGGTEEEETTSEEE-HHHHHHHHHHHHHCHHTSSSTSSTTHHHHHHHHHTT-S-BGGGGGSHHHHHHHH
T ss_pred HHHHHHhcCCCcccceEeeCceEEecHHHHHhhHHHHHHhccccccCcCCChHHHhhhhccCCCcEeeecCCHHHHHHHH
Confidence 99999999998668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCC-CCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCcccCC
Q 011288 227 DLLLSDAAARFPGL-KYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSS 305 (489)
Q Consensus 227 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~VTSS 305 (489)
++++++|+++++.+ +.++.++++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||+|||||||||||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~d~~~~l~~al~~gk~iLfEGAQG~lLDid~GtyP~VTsS 239 (421)
T PF00709_consen 160 KQILDEKNRLLEKLYGEEPLDVEEILEEYLEYAERLKPYVCDTVEFLNEALKEGKKILFEGAQGTLLDIDHGTYPYVTSS 239 (421)
T ss_dssp HHHHHHHHHHHHHCSTT-HHHHHHHHHHHHHHHHHHGGCEE-HHHHHHHHHHTT--EEEEEESEGGG-TTTSSTTSS-SS
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhCceecHHHHHHHHHHcCCcEEEecCcccccccccCcCCCcccC
Confidence 99999999998764 45567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHh
Q 011288 306 SPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQI 385 (489)
Q Consensus 306 ntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlDlv~lrya~~i 385 (489)
||+++|+|+|+|++|+.|++||||+|||+||||+||||||++++.++.||+.|||||+||||||||||||+|+||||+++
T Consensus 240 ~t~~~~a~~g~g~~~~~i~~vigV~KAY~TRvG~GpfpTE~~~~~~~~lr~~g~E~G~~tGr~RR~GwlDlv~lrya~~i 319 (421)
T PF00709_consen 240 NTTAGGACTGLGIPPRRIDRVIGVTKAYTTRVGEGPFPTELFDEVGEKLRERGNEYGTTTGRPRRCGWLDLVALRYAIRI 319 (421)
T ss_dssp --STHHHHHHHT--GGGEEEEEEEEESSEEESSSS--TTBEESHHHHHHHHHTT-BSTTTTSBEEEEEEEHHHHHHHHHH
T ss_pred cchHHHHhhhcCCCCcceeeEEEEEeeccccccCCCCCCcccchHHHHHHhcCcccCCccCCCccccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHHHHH
Q 011288 386 NGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVER 465 (489)
Q Consensus 386 ng~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~yi~~ 465 (489)
||+|+|+|||||+||++++||||++|++ +|++++.||.+..+|++|+|+|++||||++|++++++|++||+|||+||++
T Consensus 320 ng~~~lalTkLDvL~~~~~ikic~~Y~~-~G~~~~~~p~~~~~l~~~~pvy~~~~GW~~d~~~~~~~e~LP~~a~~yi~~ 398 (421)
T PF00709_consen 320 NGITELALTKLDVLDGLDEIKICVAYEY-DGKRIDYFPASIEDLEKCEPVYEELPGWKEDISGIRKYEDLPENAREYIEF 398 (421)
T ss_dssp HTESEEEEE-GGGGTTESEEEEEEEEEE-TTEEESS--SSHHHHTTEEEEEEEEEECSSGCTT--SGGGS-HHHHHHHHH
T ss_pred cCCCeEEEecccccCCCCceEEEEEEEe-CCcEeecCCcchhhcccceEEEEECCCccccccccCChhHcCHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEeeCCCcccccc
Q 011288 466 IEELVGVPINYIGVGPGRDALIY 488 (489)
Q Consensus 466 IE~~~gvpi~~isvGP~R~~~i~ 488 (489)
||+++|+||+|||+||+|+|||.
T Consensus 399 IE~~lgvpI~~is~GP~R~~tI~ 421 (421)
T PF00709_consen 399 IEEELGVPITIISVGPEREQTII 421 (421)
T ss_dssp HHHHHTS-EEEEE-SSSTTSEEE
T ss_pred HHHHHCCCEEEEEeCCChHhccC
Confidence 99999999999999999999984
No 12
>PRK13783 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=2.3e-155 Score=1200.93 Aligned_cols=404 Identities=42% Similarity=0.712 Sum_probs=390.6
Q ss_pred ceEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHH
Q 011288 66 QVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLF 145 (489)
Q Consensus 66 ~~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~L~ 145 (489)
++++|||+|||||||||||||||+++|+|||||||+||||||+ ++|+||+|||||||+|+|+++|+|||||||||+.|+
T Consensus 1 ~~~vVvG~qwGDEGKGKivD~La~~~d~VvR~qGG~NAGHTVv-~~~~k~~lhliPSGil~~~~~~viG~GvVv~p~~L~ 79 (404)
T PRK13783 1 MKRVIVGLQWGDEGKGKVVTYLSRYYDIVVRYSGGANAGHTVN-YGDFKVVHHLLPSADFKKNVGAAIGNGVVLDLEVLV 79 (404)
T ss_pred CcEEEEcCCcCCCCCchhhhhhccCCCEEEECCCcCCCCcEEE-ECCEEEEEeecCceecCCCccEEECCcEEECHHHHH
Confidence 3579999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHHHH
Q 011288 146 NEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQK 225 (489)
Q Consensus 146 ~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~~k 225 (489)
+||+.|+++|+++.+||+||+||||+||||+++|+++|..|+ .+||||||||||||+||++|.|||++||+|++.|++|
T Consensus 80 ~Ei~~L~~~g~~~~~rL~Is~rA~li~p~H~~~D~~~E~~rg-~~iGTT~rGIGPaY~dk~~R~giR~~Dl~~~~~l~~k 158 (404)
T PRK13783 80 EELEELKEKFPDYSGRIFISELAHVVLPVHKELDEIIESVRK-NAIGTTKRGIGPAYADKVMRVGVRLADLFDEEKLREF 158 (404)
T ss_pred HHHHHHHHcCCCCCCCEEEcCCCCCCCcHHHHHhhhcHHhcC-CCCCCCCCCcHHHHhhhhcccCcEEehhCCHHHHHHH
Confidence 999999999998878999999999999999999999999998 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCcccCC
Q 011288 226 LDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSS 305 (489)
Q Consensus 226 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~VTSS 305 (489)
|+.++++++..+. .+.++++++++|.+++++|+|||+|+. +|+++++ ||+||||||||+|||+|||||||||||
T Consensus 159 l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~v~d~~-~l~~~~~-gk~vLfEGAQG~lLDid~GtYP~VTSS 232 (404)
T PRK13783 159 LEKILSLYKKLYG----IEFDVEKMMEDLLTFYEKIKDLVVSPV-EIKRILE-EKSVLFEGTQGVLLDLDVGTYPYVTSS 232 (404)
T ss_pred HHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHHhhhcCCHH-HHHHHhc-CCcEEEEecchhhcccccCcCCCcCCC
Confidence 9999999988773 125689999999999999999999998 8899986 999999999999999999999999999
Q ss_pred CCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHh
Q 011288 306 SPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQI 385 (489)
Q Consensus 306 ntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlDlv~lrya~~i 385 (489)
||+++++|+|+|+ |..|++||||+|||+||||+||||||++++.++.||+.|+|||+||||||||||||+|++|||+++
T Consensus 233 ntta~g~~~g~Gi-p~~i~~ViGV~KAY~TRVG~GPFPTEl~~e~g~~Lr~~G~E~GttTGRpRR~GwlD~v~lrya~~i 311 (404)
T PRK13783 233 NCSTTGVSAGMGF-PVKVDEVIGVFKAYTTRVGEGPFPTELFGEEGEKLRKAGHEYGATTGRPRRCGWLDLPLLRYAIEV 311 (404)
T ss_pred CchHhhhhhccCC-ccccceEEEEEEeecccccCCCCCccccchHHHHHhhccCcccccCCCCcccccchHHHHHHHHHh
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHHHHH
Q 011288 386 NGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVER 465 (489)
Q Consensus 386 ng~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~yi~~ 465 (489)
||+|+||||||||||++++||||++|++ +|+++ .||.+++.|++|+|+||+||||++++ |++||+||++
T Consensus 312 ng~~~lalTkLDvL~~~~~ikic~~Y~~-~g~~~-~~P~~~~~l~~~~Pvye~~~GW~~~~---------p~~a~~yi~~ 380 (404)
T PRK13783 312 SGVDSLVMTKADVLNGFEKIKVCVRYEI-GGKEV-RDPSSLRDLEKAEPVYEEFDGWKSLE---------DKNFLKFVDF 380 (404)
T ss_pred cCCCeEEEechhhhCCCCcccEEEEEee-CCEEE-eCCCChhhhhcceEEEEecCCCCCCc---------HHHHHHHHHH
Confidence 9999999999999999999999999999 99998 69999999999999999999999775 9999999999
Q ss_pred HHHHhCCCeEEEeeCCCccccccC
Q 011288 466 IEELVGVPINYIGVGPGRDALIYK 489 (489)
Q Consensus 466 IE~~~gvpi~~isvGP~R~~~i~~ 489 (489)
||+++|+||+|||+||+|+|||.+
T Consensus 381 iE~~~g~pv~~is~Gp~R~~~i~~ 404 (404)
T PRK13783 381 IERETGRKIAYISTGPKIEEIVEV 404 (404)
T ss_pred HHHHHCCCEEEEEcCCCHHHhhcC
Confidence 999999999999999999999964
No 13
>PRK13788 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=7e-153 Score=1182.49 Aligned_cols=393 Identities=46% Similarity=0.822 Sum_probs=380.8
Q ss_pred eEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHH
Q 011288 67 VSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFN 146 (489)
Q Consensus 67 ~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~L~~ 146 (489)
.++|||+|||||||||||||||+++|+|||||||+||||||+ .+|+||+|||||||+|+|+++|+||||||+||+.|++
T Consensus 3 ~~vVvG~QwGDEGKGKivD~La~~~d~VvR~~GG~NAGHTVv-~~g~k~~lhliPSGil~~~~~~viG~GvVidp~~L~~ 81 (404)
T PRK13788 3 GIAIIGAQWGDEGKGKVVDALAPEADFVVRYQGGANAGHTVV-AKGKTFKLNLLPSGVLHPHATSVLGDGMVIDPFRFAE 81 (404)
T ss_pred cEEEEeCCcCCCCCchhhhhhcccCCEEEEeCCcCCcCcEEE-ECCEEEEEeccCceecCCCceEEECCcEEEcHHHHHH
Confidence 579999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHHHHH
Q 011288 147 EIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKL 226 (489)
Q Consensus 147 Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~~kL 226 (489)
||++|+++|++ +||+||+||||+||||+++|+. .++||||||||||||+||++|.|||++||+|++.|++||
T Consensus 82 Ei~~L~~~Gv~--~rl~Is~rahli~p~H~~~D~~------~~~IGTT~rGIGpay~dk~~R~gir~~Dl~~~~~l~~kl 153 (404)
T PRK13788 82 ERENLRAGGLN--PKLLISERAHLVLPHHKYVDGR------KNFVGTTGRGIGPAYSDRARRVGIRFGDLLDEAVLRERV 153 (404)
T ss_pred HHHHHHhCCCC--CCEEEeCCcCcCChHHHHHhCc------ccCCCCCCCcchHhhhhhcccccceeehhcCHHHHHHHH
Confidence 99999999997 6999999999999999999962 468999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCcccCCC
Q 011288 227 DLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSS 306 (489)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~VTSSn 306 (489)
+.++++++..+..+... ++++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||+||||||||||||
T Consensus 154 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~iLfEGAQG~lLDid~GtYP~VTSSn 231 (404)
T PRK13788 154 ERLLEAKPNSTREAGWD--TVEKALADLAPMREILLPFIADTGSLLREAIREGKRVLFEGAQATLLDLNYGTYPYVTSSH 231 (404)
T ss_pred HHHHHHHHHHHhhccCC--CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHCCCeEEEEccchhhhccccCcCCCcCCCC
Confidence 99999999988766432 5889999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccC----CCCCCCCCCCccccchHHHHHHH
Q 011288 307 PSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQ----EFGTTTGRPRRCGWLDVVALKYC 382 (489)
Q Consensus 307 tta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~----E~GttTGRpRR~GwlDlv~lrya 382 (489)
|+++++|+|+|++|+.|++||||+|||+||||+||||||++++.+++||+.|+ ||||||||||||||||+|++|||
T Consensus 232 t~~~g~~~g~Gi~p~~i~~ViGV~KAY~TRVG~GPFPTEl~~e~g~~lr~~G~~~~~E~GttTGRpRR~GwlD~v~lrya 311 (404)
T PRK13788 232 PTVGGILVGAGVNHKAINKVYGVAKAFTTRVGHGPFPTEVFGEMAIRLRGKGGNPWDEFGTTTGRARRVGWLDLVLLKYA 311 (404)
T ss_pred chHHHHHhccCCCccccceEEEEEEeccccccCCCCCCcCccHHHHHHHhcCCCCceeecccCCCCceeecchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHhcCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHH
Q 011288 383 CQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREF 462 (489)
Q Consensus 383 ~~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~y 462 (489)
+++||+|+|+|||||||+++++||||++|++ +| +|+||+|||| +|++++++|++||++||+|
T Consensus 312 ~~ing~~~lalTkLDvL~~~~~ikic~~Y~~-~g----------------~pvye~~~GW-~~~~~~~~~~~LP~~a~~y 373 (404)
T PRK13788 312 CEVNGFDGLVLTKLDVLSGLEKVKVCVEYDD-DG----------------QPVYKELPGW-GDLDGVKSREALPKEAQAY 373 (404)
T ss_pred HHhcCCCeEEEecchhcCCCCceeEEEEEec-CC----------------eEEEEeCCCc-cccccccChhhcCHHHHHH
Confidence 9999999999999999999999999999998 77 6999999999 7999999999999999999
Q ss_pred HHHHHHHhCCCeEEEeeCCCcccccc
Q 011288 463 VERIEELVGVPINYIGVGPGRDALIY 488 (489)
Q Consensus 463 i~~IE~~~gvpi~~isvGP~R~~~i~ 488 (489)
|++||+++|+||+|||+||+|+|||-
T Consensus 374 i~~iE~~~g~pv~~is~Gp~R~~~i~ 399 (404)
T PRK13788 374 LELIEETTGVPVVMFSTSPRREDTYG 399 (404)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHhhc
Confidence 99999999999999999999999983
No 14
>KOG1355 consensus Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.7e-152 Score=1137.05 Aligned_cols=429 Identities=56% Similarity=1.021 Sum_probs=417.9
Q ss_pred CCccccccCCceEEEEcCCCccCCchhhHhhhcc--CCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEe
Q 011288 56 ELPSQIESLSQVSGVLGSQWGDEGKGKLVDILAE--HFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVI 133 (489)
Q Consensus 56 ~~~~~~~~~~~~~vVvG~qwGDEGKGKivD~La~--~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vI 133 (489)
....++.+.+++.+|+|+|||||||||+||+||+ ++|+|+|+|||+||||||| +||++|.||++||||++|++.++|
T Consensus 20 ~g~~~~~~~~~v~vvLG~QWgDeGKGk~vdll~~~~~~di~arcqGGnNAGHTvv-~~g~~ydfHllPSGiinp~~~~~i 98 (455)
T KOG1355|consen 20 GGPRARPSGNQVTVVLGAQWGDEGKGKVVDLLAQDAKVDIVARCQGGNNAGHTVV-VDGVEYDFHLLPSGIINPNCTNFI 98 (455)
T ss_pred CCCccccCCCceEEEEeeeeccCCCceeEEeecccCCCceeeeccCCCCCCcEEE-EcceEEeeeeccccccCCCceEEe
Confidence 3444667899999999999999999999999999 6799999999999999999 999999999999999999999999
Q ss_pred cCCeEechHHHHHHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCC---CCCCCCcchhhhccccccCC
Q 011288 134 GNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSF---IGTTRRGIGPAYSSKVIRNG 210 (489)
Q Consensus 134 G~GvVvdp~~L~~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~---iGTTgrGIGpay~dk~~R~g 210 (489)
|||||||++.|++|++.|+++|+.+.+||+||||||++|+||++.|.++|.+++.+. ||||++||||+|+.|+.|+|
T Consensus 99 GNGVVihlp~lF~E~e~le~kGl~~~~Rl~iSdrAHLvFdfHq~vDglqE~el~~~~gkniGTTkkGIGP~YSsKa~RsG 178 (455)
T KOG1355|consen 99 GNGVVIHLPGLFEELEKLEAKGLKWEKRLIISDRAHLVFDFHQAVDGLQEQELQEQSGKNIGTTKKGIGPAYSSKAARSG 178 (455)
T ss_pred cceeEEechhHHHHHHhhhhccccccceeEeccchhheeehhhhcchhhHHHHHhhhcccccccCCCcCcccchhhhhcC
Confidence 999999999999999999999999999999999999999999999999999997655 99999999999999999999
Q ss_pred CeEeeCC-CCCcHHHHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccc
Q 011288 211 IRVCDLR-HMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQA 289 (489)
Q Consensus 211 iRv~DL~-~~~~l~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG 289 (489)
|||+||. |++.|.+|++.+++.+..+++.++++ +++++++|+.++++|+|||.|++.||++|+..+|+||+||||+
T Consensus 179 iRv~dL~~D~~~fs~r~k~l~~~~~~~fp~~e~d---ie~el~~~K~~aekl~p~V~D~V~F~~eal~~~KkiLVEGana 255 (455)
T KOG1355|consen 179 LRVCDLVSDFDEFSERFKVLAEQYKSRFPTLEID---IEGELARYKGYAEKLKPMVRDTVYFMYEALHGKKKILVEGANA 255 (455)
T ss_pred cchhHHHhHHHHHHHHHHHHHHHHHHhcCCeEec---HHHHHHHHHHHHHhhcchhhchhhhhhhhhhcCceEEEecccc
Confidence 9999998 59999999999999999999988765 9999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCcccCCCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCC
Q 011288 290 TMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPR 369 (489)
Q Consensus 290 ~LLDid~GtYP~VTSSntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpR 369 (489)
+|||+||||||||||||||.+|+|+|+|+||+.|.++|||+|||+||||.||||||..++.|+.||.+|+|||+||||+|
T Consensus 256 amLDiDFGTYPfVTSSn~tvGGvcTGlGipPq~ig~viGVVKAYtTRVG~GpFPTEqlneiGelLqt~G~E~GvTTgRkR 335 (455)
T KOG1355|consen 256 AMLDIDFGTYPFVTSSNCTVGGVCTGLGIPPQNIGEVIGVVKAYTTRVGIGPFPTEQLNEIGELLQTRGREFGVTTGRKR 335 (455)
T ss_pred eeeecccCcccccccCCCcccceeccCCCCcccccceeeeEeeeeeecccCCCchhhccchhHHHHhccceeeeecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHhcCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccc
Q 011288 370 RCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSV 449 (489)
Q Consensus 370 R~GwlDlv~lrya~~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~ 449 (489)
||||||+++||||++|||+|+|+|||||+||.|+||||+|+|+. +|+.+++||++++.|.++|..|++||||++|++++
T Consensus 336 RCGWLDlv~Lkys~mING~tal~lTKLDiLd~~~eIkvgVaYk~-~G~~i~~fPa~~~~l~~~eveY~~lpGW~~~~~~v 414 (455)
T KOG1355|consen 336 RCGWLDLVLLKYSHMINGFTALALTKLDILDTFPEIKVGVAYKL-NGKIIPHFPANQEVLGKVEVEYKTLPGWKTDTTGV 414 (455)
T ss_pred ccchhHHHHHHHHHhhcchhheeeehhhhhhhccceeEEEEEee-CCcCCCCCcccHHHHhheeEEEEecCCCCccchhh
Confidence 99999999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHHHHHHhCCCeEEEeeCCCccccccC
Q 011288 450 RNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALIYK 489 (489)
Q Consensus 450 ~~~~~LP~~a~~yi~~IE~~~gvpi~~isvGP~R~~~i~~ 489 (489)
|+|+|||++||+|+++||+++||||.||++||.||.+|.+
T Consensus 415 r~~~dlP~~aq~Yv~fiE~~v~vpv~~iGvG~~Resmi~~ 454 (455)
T KOG1355|consen 415 RNFKDLPENAQQYVRFIEDFVGVPVKWIGVGKGRESMIQL 454 (455)
T ss_pred hhHhhhhHHHHHHHHHHHHhhCCceEEEEecCChHHhhcc
Confidence 9999999999999999999999999999999999999974
No 15
>cd03108 AdSS Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the r-phosphate group of GTP is transferred to the 6-oxygen atom of IMP. An aspartate then displaces this 6-phosphate group to form the product adenylosuccinate. Because of its critical role in purine biosynthesis, AdSS is a target of antibiotics, herbicides and antitumor drugs.
Probab=100.00 E-value=7e-150 Score=1145.92 Aligned_cols=362 Identities=64% Similarity=1.095 Sum_probs=357.6
Q ss_pred EEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHH
Q 011288 68 SGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNE 147 (489)
Q Consensus 68 ~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~L~~E 147 (489)
++|||+|||||||||||||||+++|+|||||||+||||||+ ++|+||+|||||||+|+|+++|+|||||||||+.|++|
T Consensus 2 ~vVvG~qwGDEGKGKivD~La~~~d~VvR~~GG~NAGHTvv-~~g~k~~lhliPSGil~~~~~~viG~GvVidp~~l~~E 80 (363)
T cd03108 2 TVVVGAQWGDEGKGKIVDLLAERADIVVRFQGGNNAGHTVV-VNGKKFKLHLLPSGILNPGVTCVIGNGVVIDPPALFEE 80 (363)
T ss_pred EEEEecccCCCCCceeeeeccccCCEEEEcCCcCCCCcEEE-ECCEEEEEEecCccccCCCceEEECCeEEEcHHHHHHH
Confidence 68999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHHHHHH
Q 011288 148 IDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLD 227 (489)
Q Consensus 148 i~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~~kL~ 227 (489)
|++|+++|+++.+||+||+||||+||||+++|+++|.+|+.++||||||||||||+||++|.|||++||
T Consensus 81 i~~L~~~g~~~~~rL~Is~ra~li~P~H~~lD~~~E~~rg~~~iGTT~rGIGpay~dk~~R~gir~~Dl----------- 149 (363)
T cd03108 81 IDELEKKGGDVTGRLFISDRAHLVFPYHILLDGLREEARGKKKIGTTKRGIGPAYEDKAARRGIRVGDL----------- 149 (363)
T ss_pred HHHHHHcCCCCCCCEEEcCCCCCCChHHHHHhhhhHhhcCCCCcCCCCCcchHHHHHhhhccCCeEEeC-----------
Confidence 999999999887899999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCcccCCCC
Q 011288 228 LLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVTSSSP 307 (489)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~VTSSnt 307 (489)
|+..+|++|+++||+||||||||+|||+|||||||||||||
T Consensus 150 ---------------------------------------d~~~~l~~a~~~gk~vLfEGAQG~lLDid~GtYPyVTSSnt 190 (363)
T cd03108 150 ---------------------------------------DTSYLINEAIQAGKKVLFEGAQGTLLDIDFGTYPFVTSSNT 190 (363)
T ss_pred ---------------------------------------cHHHHHHHHHHcCCcEEEEccchhhhccccCcCCCcCCCCc
Confidence 88899999999999999999999999999999999999999
Q ss_pred cccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHHHhcC
Q 011288 308 SAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCCQING 387 (489)
Q Consensus 308 ta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlDlv~lrya~~ing 387 (489)
+++++|+|+|++|+.|++||||+|||+||||+||||||++++.++.||+.|+|||+||||||||||||++++|||+++||
T Consensus 191 ~a~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPFpTEl~~e~g~~lr~~G~E~GttTGRpRR~Gw~D~v~lrya~~ing 270 (363)
T cd03108 191 TAGGACTGLGIPPRKIGRVIGVVKAYTTRVGSGPFPTELFDETGDKLREAGHEFGTTTGRPRRCGWLDLVALKYAVRING 270 (363)
T ss_pred hhhhhhhccCCCccccceEEEEEeeccccccCCCCCccCchHHHHHHhhcCCcccccCCCCcccccchHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHHHHHHH
Q 011288 388 LSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIE 467 (489)
Q Consensus 388 ~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~yi~~IE 467 (489)
+|+|+|||||||+++++||||++|++ +|+.++.||++++.|++|+||||+||||++|++++|+|++||++|++||++||
T Consensus 271 ~t~lalTkLDvL~~~~~ikvc~~Y~~-~g~~~~~~p~~~~~l~~~~Pvye~~~GW~~~~~~~~~~~~LP~~a~~yi~~iE 349 (363)
T cd03108 271 VTELALTKLDVLDGLDEIKVCVAYEL-DGKEIDYFPADLEDLEKVEPVYETLPGWKEDISGVRSYDDLPENAQNYIKRIE 349 (363)
T ss_pred CCeEEEeceeecCCCCeEEEEEeEEe-CCEEEeeCCCChhHHhccEEEEEECCCCccccccccchhhcCHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEeeCC
Q 011288 468 ELVGVPINYIGVGP 481 (489)
Q Consensus 468 ~~~gvpi~~isvGP 481 (489)
+++|+||.|||+||
T Consensus 350 ~~~g~pv~~is~Gp 363 (363)
T cd03108 350 ELVGVPISIISVGP 363 (363)
T ss_pred HHHCCCEEEEEeCc
Confidence 99999999999998
No 16
>PTZ00351 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=4.3e-147 Score=1162.12 Aligned_cols=425 Identities=28% Similarity=0.455 Sum_probs=403.6
Q ss_pred CCccccccCCceEEEEcCCCccCCchhhHhhhccC--CCEEEecCCCCCCccEEEec-CCeEEEEeecCceeecCCceeE
Q 011288 56 ELPSQIESLSQVSGVLGSQWGDEGKGKLVDILAEH--FDIVARCQGGANAGHTIYNA-EGKKFALHLVPSGILNEDTVCV 132 (489)
Q Consensus 56 ~~~~~~~~~~~~~vVvG~qwGDEGKGKivD~La~~--~d~VVRfnGG~NAGHTVv~~-~g~k~~lhliPSGil~~~~~~v 132 (489)
.+|++|-..+++++|||+|||||||||||||||++ +|+|||||||+||||||| . +|+||+|||||||+|++++.|+
T Consensus 160 ~~~~~~~~~~~viVVVGaQWGDEGKGKIVD~LA~~~~aDvVVRfqGG~NAGHTVV-~~~Gkky~LHLIPSGIL~p~~~~v 238 (710)
T PTZ00351 160 DSLYRIVEAHDVIMVAGAFFGDEGKGKTVDAVAHHPLCTCIARVNSGENAGHTVY-DKAGRKFVFNLAPSGLLLPGKRNY 238 (710)
T ss_pred hhhhHHHhhcCcEEEEcCCccCCCCchhhhhhccCCCCCEEEEcCCcCCCCceEE-ecCCeEEEEeccCceecCCCceEE
Confidence 58899999999999999999999999999999998 899999999999999999 6 8999999999999999999999
Q ss_pred ecCCeEechHHHH-HHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCC
Q 011288 133 IGNGVVVHLPGLF-NEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGI 211 (489)
Q Consensus 133 IG~GvVvdp~~L~-~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~gi 211 (489)
||+||||||++|+ +||+.|++.|+++.+||+||+|| ||||||+++|.++| .+||||+|||||||+||++|+||
T Consensus 239 IGnGVVIdP~~L~e~EI~~L~~~Gi~~~~RL~ISdrA-lI~PyH~~lD~l~E-----~~iGTT~rGIGPaY~DKv~R~GI 312 (710)
T PTZ00351 239 IGPECVMDPVSFMEKEIIQLIDAGIDYRDRLFIGNVC-IVTPYHKLLDLLGS-----AANSSTLKGMAPVHGSKVMKRGI 312 (710)
T ss_pred ECCCEEEcHHHHHHHHHHHHHHcCCCCCCCEEEcccc-ccChhHHHHHhhhh-----hccCCCCCccChhhhchhhhccc
Confidence 9999999999998 79999999999877899999999 99999999999988 47999999999999999999999
Q ss_pred eEeeCCCC-CcHHHHHHHHHHHHHhhcc-------CC---CCCc------------ccH---HHHHHHHH-HHHHHhC--
Q 011288 212 RVCDLRHM-DTFPQKLDLLLSDAAARFP-------GL---KYTP------------DVL---REEVEKYK-RFAERLE-- 262 (489)
Q Consensus 212 Rv~DL~~~-~~l~~kL~~~~~~~~~~~~-------~~---~~~~------------~~~---~~~~~~~~-~~~~~l~-- 262 (489)
|++||+|+ +.|++||+.+++.++.+++ .+ +.++ .++ ++++++|. .++++|+
T Consensus 313 Rl~DL~~~~~~lr~rL~~~l~~~n~~l~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~e~~~e~l~~~y~~rl~~~ 392 (710)
T PTZ00351 313 RLDHIFNDDETLRKRLEKDMDTYLGLLKVKNLSDADVVRLCREENSDGVVRVPDYVIAFAQAKDKVEFLVKLYRDRVRHN 392 (710)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHHHHHhhcccccccchhhhccccccccccccccccccchhHHHHHHHHHHHHHHHHhcc
Confidence 99999997 8999999999999998887 32 1111 222 67788888 9999999
Q ss_pred ---CCccChHHHHHHHHHCCCcEEEEeccchhhcccCCC-CCcccCCCCcccccccccCCCCcccCe-EEEEEeec-ccc
Q 011288 263 ---PFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGT-YPFVTSSSPSAGGICTGLGIAPRVVGD-LIGVVKAY-TTR 336 (489)
Q Consensus 263 ---~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~Gt-YP~VTSSntta~g~~~g~Gi~p~~i~~-viGV~KAY-~TR 336 (489)
||++|+..+|++|+++||+||||||||+|||+|||| |||||||||+++|+|+|+|++|+.|++ ||||+||| +||
T Consensus 393 ~~~p~v~Dt~~~L~~A~~~GkkVLfEGAQg~lLDiD~GT~YPfVTSSnttAgGa~~G~Gi~p~~i~~~ViGV~KAY~sTR 472 (710)
T PTZ00351 393 PDFPARCDVTYELHAAVLRGEKVLLEGPQSYWLSNARTKFWESTTSADTTAAGLLAASQLNFQKFKSVVLNVHKAPGSSR 472 (710)
T ss_pred CCCCeEEeHHHHHHHHHHCCCeEEEEcchhhhhhhhcCCCCCCcCccchHHHHHHhhcCCCcccCCceEEEEEeCCCCCc
Confidence 999999999999999999999999999999999997 999999999999999999999999999 99999999 999
Q ss_pred cccCCCCC-------------------------------------------------------ccCCCccchh-------
Q 011288 337 VGSGPFPT-------------------------------------------------------EIFGQGGDRL------- 354 (489)
Q Consensus 337 VG~GPfPT-------------------------------------------------------El~~~~g~~l------- 354 (489)
||+||||| |+++++|++|
T Consensus 473 VG~GPFPT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~El~de~G~~l~~~~~~~ 552 (710)
T PTZ00351 473 VGIGACPSSFVPQDYFSAQNIKTLRDLPSATCANFEAVQRTLFRDGFPHSNDKARHNGIMAPVEYSDETGDYNIGVAMAI 552 (710)
T ss_pred CcCCCCCCcccccccccccccccccccccccccccchhcccccccccccccccccccccCCccccccchhhHhhhccccc
Confidence 99999999 8889999999
Q ss_pred --hhccCCCCCCCCCCCccccchHHHHHHHHHhcCcceEeeecccccCCCCCcEEEeeeecC--CCcccc----------
Q 011288 355 --RLAGQEFGTTTGRPRRCGWLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQF--DGTPVK---------- 420 (489)
Q Consensus 355 --r~~g~E~GttTGRpRR~GwlDlv~lrya~~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~--~G~~~~---------- 420 (489)
|+.|+|||+||||||||||||+|++||++++||+ +|+||||||||++++||||++|++. +|+.++
T Consensus 553 ~~r~~G~E~GatTGRPRRCGWfD~Vllrya~~inG~-~LalTKLDVLd~ldeIkVcvaY~~~~~~gk~~~~~~~~~~~~~ 631 (710)
T PTZ00351 553 ASAQHHGECGAVTKKPRVCGFFDCVLQHEVNSIQGP-YLTISALDRGDEYDKVGVTIAYVYYNPEGKQVDVNGHVYKNGD 631 (710)
T ss_pred hhhhcCccccCCCCCCccccchHHHHHHHHHhcCCc-eEEEeeeeccCCCCeeeEEEEEEeeCCCCeEeccccccccccc
Confidence 9999999999999999999999999999999999 9999999999999999999999974 899887
Q ss_pred ------cCCcChhhhccCeEEEEEcCCcccc-cccc--cCCCCCcHHHHHHHHHHHHHhCCCeEEEeeCCCccccccC
Q 011288 421 ------SFPADLLLLEQLKVEYEVLPGWQSD-ISSV--RNYSDLPKGAREFVERIEELVGVPINYIGVGPGRDALIYK 489 (489)
Q Consensus 421 ------~~P~~~~~l~~~~pvY~~~~GW~~d-i~~~--~~~~~LP~~a~~yi~~IE~~~gvpi~~isvGP~R~~~i~~ 489 (489)
.|| +...|++|+|||++||||+++ |+++ |+|++||++|++||++||+++|+||.|||+||+|+|||.+
T Consensus 632 ~~~~~~~~P-~~~~L~~~~PIYe~~~GWk~~~is~~k~r~~~~LP~~a~~Yi~~IE~~~gvpI~~IsvGP~R~q~I~~ 708 (710)
T PTZ00351 632 IIRAGDPVP-SEPALYHCHPIVKLIDGWRDNPIAAAKRRRNAPLPRGVCELLSTIEYFTNCKILSIGNGPNGDDIIYL 708 (710)
T ss_pred cccccCCCC-ChHHhccceEEEEECCCCCCCcccccccCChHHhhHHHHHHHHHHHHHHCCCEEEEecCCChhHeeEe
Confidence 899 689999999999999999999 9988 9999999999999999999999999999999999999963
No 17
>PRK04293 adenylosuccinate synthetase; Provisional
Probab=100.00 E-value=5.3e-133 Score=1010.01 Aligned_cols=329 Identities=40% Similarity=0.667 Sum_probs=312.3
Q ss_pred ceEEEEcCCCccCCchhhHhhhcc--CCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHH
Q 011288 66 QVSGVLGSQWGDEGKGKLVDILAE--HFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPG 143 (489)
Q Consensus 66 ~~~vVvG~qwGDEGKGKivD~La~--~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~ 143 (489)
+.++|||+|||||||||||||||+ ++|+|||||||+||||||+ .+|+||+|||||||+|+|++.|+||||||+||+.
T Consensus 2 ~~~vVvG~qwGDEGKGkivD~La~~~~~d~VvR~~GG~NAGHTvv-~~g~k~~lhliPSGil~~~~~~~iG~GvVv~p~~ 80 (333)
T PRK04293 2 TCTIVVGGFFGDEGKGKIIAYLALKDKPSIIARGGVGPNAGHTVE-YNGKKYGLRMIPSGFVNKDAKLAIGAGVLVDPEV 80 (333)
T ss_pred CcEEEEecccCCCCCceeehhhcccCCCCEEEEcCCCCCCCcEEE-ECCEEEEEEecCccccCCCccEEECCcEEECHHH
Confidence 457999999999999999999998 8999999999999999999 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHH
Q 011288 144 LFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFP 223 (489)
Q Consensus 144 L~~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~ 223 (489)
|++||+.| |+ .+||+||+||||++|||+++|+++|. ++ ++||||||||||||+||++|.|||+.|.
T Consensus 81 L~~Ei~~L---~~--~~rL~Is~ra~li~p~H~~~D~~~E~-~~-~~IGTT~rGIGpaY~dk~~R~gir~~~~------- 146 (333)
T PRK04293 81 LLKEVEEL---NV--GGRVFVDYRCGIIEEKHVEEDRSDEH-LS-KKIGSTGTGCGPANADRVLRRLKLAKDV------- 146 (333)
T ss_pred HHHHHHHh---CC--CCCEEEcCCCccCCHHHHHHhHHhHH-hC-CCCCCCCCcccHhhHHHHhhhhhhccch-------
Confidence 99999999 54 37999999999999999999999998 44 8999999999999999999999998431
Q ss_pred HHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCccc
Q 011288 224 QKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVT 303 (489)
Q Consensus 224 ~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~VT 303 (489)
++|+|||+|+..+|++++++||+||||||||+|||+|||||||||
T Consensus 147 -----------------------------------~~l~~~v~d~~~~l~~al~~gk~vLfEGAQG~lLDid~GtYP~VT 191 (333)
T PRK04293 147 -----------------------------------EELEKYLTDVPEEVNEALDRGENVLIEGTQGFGLSLYYGTYPYVT 191 (333)
T ss_pred -----------------------------------hhhccceecHHHHHHHHHHCCCeEEEEeccceeeccccCcCCCcc
Confidence 478999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHHH
Q 011288 304 SSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYCC 383 (489)
Q Consensus 304 SSntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlDlv~lrya~ 383 (489)
||||+++++|+|+|++|+.|++||||+|||+||||+||||||++++.++.++. +|||+||||||||||||++++|||+
T Consensus 192 SSnt~a~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPFpTEl~~e~g~~~g~--~E~GttTGRpRR~GwlD~v~lrya~ 269 (333)
T PRK04293 192 SKDTTASGIASDVGVGPTKVDEVIVVFKSYPTRVGEGPFPTELSLEEAEKLGL--VEYGTVTGRRRRVGPFDFELARRAA 269 (333)
T ss_pred CCCchhhhhhhccCCCCcccceEEEEEeeecccccCCCCCccCCchhhhhcCC--ccccccCCCCcccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998885442 5999999999999999999999999
Q ss_pred HhcCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHHH
Q 011288 384 QINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFV 463 (489)
Q Consensus 384 ~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~yi 463 (489)
++||+|+|+|||||||+. +++++++|++||++|++||
T Consensus 270 ~ing~~~lalTklDvL~~-------------------------------------------~~~~~~~~~~LP~~a~~yi 306 (333)
T PRK04293 270 RINGATQIAITKLDKLDK-------------------------------------------EAYGVTEYDKLPPEAKKFI 306 (333)
T ss_pred HhcCCCeEEEEcceecCC-------------------------------------------ccccCCchHHcCHHHHHHH
Confidence 999999999999999971 4678999999999999999
Q ss_pred HHHHHHhCCCeEEEeeCCCccccccC
Q 011288 464 ERIEELVGVPINYIGVGPGRDALIYK 489 (489)
Q Consensus 464 ~~IE~~~gvpi~~isvGP~R~~~i~~ 489 (489)
++||+++|+||.|||+||+|+|||.+
T Consensus 307 ~~iE~~~~~pv~~is~Gp~r~~~i~~ 332 (333)
T PRK04293 307 EEIEEELGVPVTLISTGPELEDTIDL 332 (333)
T ss_pred HHHHHHHCCCEEEEEcCCCHHHeEec
Confidence 99999999999999999999999964
No 18
>PF13316 DUF4087: Protein of unknown function (DUF4087)
Probab=52.05 E-value=4.3 Score=35.95 Aligned_cols=10 Identities=50% Similarity=1.335 Sum_probs=8.5
Q ss_pred CccccchHHH
Q 011288 369 RRCGWLDVVA 378 (489)
Q Consensus 369 RR~GwlDlv~ 378 (489)
+||||||-|.
T Consensus 7 ~RCGW~~NPt 16 (101)
T PF13316_consen 7 TRCGWFDNPT 16 (101)
T ss_pred cccCcccCCC
Confidence 7999999764
No 19
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=48.02 E-value=18 Score=38.34 Aligned_cols=63 Identities=33% Similarity=0.345 Sum_probs=39.9
Q ss_pred HHHHHHHHh---cCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCC
Q 011288 377 VALKYCCQI---NGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYS 453 (489)
Q Consensus 377 v~lrya~~i---ng~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~ 453 (489)
.++..|-.. -++|++.|||||. +.-.-+-+.++|++ =.||| |=|+-|. ++
T Consensus 272 nal~QAk~F~eav~l~GiIlTKlDg-tAKGG~il~I~~~l------------------~~PI~--fiGvGE~------~~ 324 (340)
T COG0552 272 NALSQAKIFNEAVGLDGIILTKLDG-TAKGGIILSIAYEL------------------GIPIK--FIGVGEG------YD 324 (340)
T ss_pred hHHHHHHHHHHhcCCceEEEEeccc-CCCcceeeeHHHHh------------------CCCEE--EEeCCCC------hh
Confidence 355555554 4899999999994 43344445555554 13443 5577754 55
Q ss_pred CC-cHHHHHHHHHH
Q 011288 454 DL-PKGAREFVERI 466 (489)
Q Consensus 454 ~L-P~~a~~yi~~I 466 (489)
|| |-+++.|++.|
T Consensus 325 DL~~Fd~~~fv~~L 338 (340)
T COG0552 325 DLRPFDAEWFVDAL 338 (340)
T ss_pred hccccCHHHHHHHh
Confidence 66 67788888765
No 20
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=37.81 E-value=77 Score=30.74 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=65.9
Q ss_pred CCccccccCCceEEEEcCCCcc-------CCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCC
Q 011288 56 ELPSQIESLSQVSGVLGSQWGD-------EGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNED 128 (489)
Q Consensus 56 ~~~~~~~~~~~~~vVvG~qwGD-------EGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~ 128 (489)
++-++......+.|+=....+| |||+|++|. +..+-+=|+|-|=-|.+--|...| ..|...++.|.-= .
T Consensus 58 tA~Y~l~d~~~I~V~n~c~~~~~~~~~~ieGkA~i~~~-~~~a~LkVsF~~pF~g~Y~Vl~~d-~eYs~aiVgsPdr--~ 133 (174)
T COG3040 58 TATYSLRDDGGISVINRCRTGDGGKWSQIEGKAKIVDN-ATRAKLKVSFFGPFYGDYWVLALD-PEYSWAIVGSPDR--E 133 (174)
T ss_pred EeEEEEecCCceEEEeccccCCCCCceeecceEEEecC-ccccEEEEEecCCccccEEEEEEC-CCccEEEEeCCCc--c
Confidence 3344443444444443443333 799999998 447789999998666555566444 4477777666432 2
Q ss_pred ceeEecCCeEechHHHHHHHHHHHHCCCCCC
Q 011288 129 TVCVIGNGVVVHLPGLFNEIDGLEANGVSCK 159 (489)
Q Consensus 129 ~~~vIG~GvVvdp~~L~~Ei~~L~~~Gi~~~ 159 (489)
-.=+++.-.-++.+.+.+=++.-++.|.++.
T Consensus 134 ylWlLsRtP~~s~~~~~~ml~~ak~~Gfdv~ 164 (174)
T COG3040 134 YLWLLSRTPTLSQETLKRMLEIAKRRGFDVS 164 (174)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 3345777777999988888888888999864
No 21
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=35.46 E-value=1.1e+02 Score=29.39 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=15.5
Q ss_pred HHHHHhcCcceEeeecccccC
Q 011288 380 KYCCQINGLSSLNLTKLDVLS 400 (489)
Q Consensus 380 rya~~ing~~~lalTkLDvL~ 400 (489)
..-.+.-+++++.+||+|--.
T Consensus 134 ~~~~~~~~~~~lIlTKlDet~ 154 (196)
T PF00448_consen 134 LAFYEAFGIDGLILTKLDETA 154 (196)
T ss_dssp HHHHHHSSTCEEEEESTTSSS
T ss_pred HHHhhcccCceEEEEeecCCC
Confidence 333455579999999999754
No 22
>PRK05414 urocanate hydratase; Provisional
Probab=32.09 E-value=3.7e+02 Score=30.49 Aligned_cols=161 Identities=14% Similarity=0.158 Sum_probs=96.4
Q ss_pred eeEecCCeEechHHHHHHHHHHHHCCCCC------CCCeEEeCCccccchhHHHhHHHHHHHhcCC----CCCCCC---C
Q 011288 130 VCVIGNGVVVHLPGLFNEIDGLEANGVSC------KGRILVSDRAHLLFDFHQEIDGLREAELAKS----FIGTTR---R 196 (489)
Q Consensus 130 ~~vIG~GvVvdp~~L~~Ei~~L~~~Gi~~------~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~----~iGTTg---r 196 (489)
+.+|.|+.+|--..=.++.++|++.|+-. -+=+||-..--|-=-|--.++..+- .-+.. -+=|.| +
T Consensus 100 RVliaN~~lVp~wa~~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk-~f~g~L~G~~~lTaGLGGM 178 (556)
T PRK05414 100 RVLIANSNLVPHWANWEHFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQ-HFGGDLAGRLVLTAGLGGM 178 (556)
T ss_pred eEEEEcCccccCCCCHHHHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHH-hcCCCCceeEEEEecCCcc
Confidence 57899999998778889999999999743 2467888865443224333333222 11111 011222 2
Q ss_pred cchhhhccccccCCCeE-eeCCCCCcHHHHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHhCC----CccChHHH
Q 011288 197 GIGPAYSSKVIRNGIRV-CDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEP----FITDTVHF 271 (489)
Q Consensus 197 GIGpay~dk~~R~giRv-~DL~~~~~l~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~v~D~~~~ 271 (489)
|=...-+-+++. ++-+ .| .|++++++|+++= . +.....++++.++...+..++=+| |+-++..+
T Consensus 179 gGAQPlA~~mag-~v~i~vE-vd~~ri~kR~~~g------y---ld~~~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv 247 (556)
T PRK05414 179 GGAQPLAATMAG-AVCLAVE-VDESRIDKRLRTG------Y---LDEKADDLDEALALAEEAKAAGEPLSIGLLGNAADV 247 (556)
T ss_pred ccccHHHHHhcC-ceEEEEE-ECHHHHHHHHhCC------c---ceeEcCCHHHHHHHHHHHHHcCCceEEEEeccHHHH
Confidence 222222333332 3332 33 3677777776641 1 122234588888777766666565 47788888
Q ss_pred HHHHHHCCCcEEEEeccchhhcccCCCCCcc
Q 011288 272 MNESIAQKRKILVEGGQATMLDIDFGTYPFV 302 (489)
Q Consensus 272 l~~al~~gk~vLfEGAQG~LLDid~GtYP~V 302 (489)
+.+.+++|-.+=+---|=..=|...|.||--
T Consensus 248 ~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G 278 (556)
T PRK05414 248 LPELVRRGIRPDLVTDQTSAHDPLNGYLPVG 278 (556)
T ss_pred HHHHHHcCCCCCccCcCccccCcccccCCCC
Confidence 8888888766666677777778888888843
No 23
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=29.58 E-value=4.6e+02 Score=29.65 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=94.9
Q ss_pred eeEecCCeEechHHHHHHHHHHHHCCCCCC------CCeEEeCCccccchhHHHhHHHHHHHhcCC----CCCCCCCc-c
Q 011288 130 VCVIGNGVVVHLPGLFNEIDGLEANGVSCK------GRILVSDRAHLLFDFHQEIDGLREAELAKS----FIGTTRRG-I 198 (489)
Q Consensus 130 ~~vIG~GvVvdp~~L~~Ei~~L~~~Gi~~~------~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~----~iGTTgrG-I 198 (489)
+.+|.|+.+|--..=.++.++|++.|+-.- +=+||-..--|-=-|--.++..+ +.-+.. -+=|.|.| +
T Consensus 91 RVliaNs~lVp~wa~~e~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aar-k~f~~~L~G~~~lTaGLGGM 169 (545)
T TIGR01228 91 RVLIANSNLVPHWADWEHFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELAR-QHFGGSLKGKWVLTAGLGGM 169 (545)
T ss_pred eEEEEcCccccCCCCHHHHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHH-HhcCCCCceeEEEEeCCCcc
Confidence 578999999988888899999999997532 46788886544322333333222 211111 01112221 2
Q ss_pred h--hhhccccccCCCeE-eeCCCCCcHHHHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHhCC----CccChHHH
Q 011288 199 G--PAYSSKVIRNGIRV-CDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEP----FITDTVHF 271 (489)
Q Consensus 199 G--pay~dk~~R~giRv-~DL~~~~~l~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~v~D~~~~ 271 (489)
| ..-+-+++. ++-+ .| .|++.+++|+++= . +.....++++.++...++.++=+| |+-+...+
T Consensus 170 gGAQPlA~~mag-~v~i~vE-vd~~ri~kR~~~g------y---ld~~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv 238 (545)
T TIGR01228 170 GGAQPLAVTMNG-GVSIAVE-VDESRIDKRLETK------Y---CDEQTDSLDEALARAEEAKAEGKPISIGLLGNAAEV 238 (545)
T ss_pred ccccHHHHHHcC-ceEEEEE-ECHHHHHHHHhcC------c---ceeEcCCHHHHHHHHHHHHHcCCceEEEeeccHHHH
Confidence 2 222323332 3322 34 3677777776641 1 122234588888777776666565 47788888
Q ss_pred HHHHHHCCCcEEEEeccchhhcccCCCCCc
Q 011288 272 MNESIAQKRKILVEGGQATMLDIDFGTYPF 301 (489)
Q Consensus 272 l~~al~~gk~vLfEGAQG~LLDid~GtYP~ 301 (489)
+.+.+++|-.+=+---|=..=|...|.||-
T Consensus 239 ~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~ 268 (545)
T TIGR01228 239 LPELLKRGVVPDVVTDQTSAHDPLNGYIPE 268 (545)
T ss_pred HHHHHHcCCCCCCcCCCCcccCcccccCCC
Confidence 888888876666666777777888886674
No 24
>PF06279 DUF1033: Protein of unknown function (DUF1033); InterPro: IPR010434 This family consists of several hypothetical bacterial proteins. Many of the sequences in this family are annotated as putative DNA binding proteins but the function of this family is unknown.
Probab=29.08 E-value=34 Score=31.26 Aligned_cols=33 Identities=12% Similarity=0.415 Sum_probs=28.1
Q ss_pred EcCCcccccccccCCCCCcHHHHHHHHHHHHHh
Q 011288 438 VLPGWQSDISSVRNYSDLPKGAREFVERIEELV 470 (489)
Q Consensus 438 ~~~GW~~di~~~~~~~~LP~~a~~yi~~IE~~~ 470 (489)
-|.||.++|....+|+++-+..+.|-+.+.++-
T Consensus 16 ffedWeedIve~~~F~~~eeAl~~Y~~~~~~~~ 48 (120)
T PF06279_consen 16 FFEDWEEDIVEEKEFDNYEEALKYYKKLWQKLK 48 (120)
T ss_pred ccccchHhhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999888888877776654
No 25
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=27.71 E-value=80 Score=31.46 Aligned_cols=70 Identities=24% Similarity=0.356 Sum_probs=44.7
Q ss_pred EEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHHHHH
Q 011288 68 SGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGLFNE 147 (489)
Q Consensus 68 ~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~L~~E 147 (489)
+.=+-+||||++-.+ ..+++.+-+-.=|.| | |.+| ---+|+=|||.|..-..--||+|.=.--..|.+|
T Consensus 116 v~~LaLrFGe~~~~~--~~msRPFGValliAG-----~---D~~g-pqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e 184 (241)
T KOG0176|consen 116 VSDLALRFGEGDDEE--AIMSRPFGVALLIAG-----H---DETG-PQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEE 184 (241)
T ss_pred HHHHHhHhCCCcchh--hhhcCCcceEEEEee-----c---cCCC-ceEEEeCCCCceEEecceeccccchHHHHHHHHH
Confidence 344678999997333 346778877777754 3 2222 2356999999998655556999965444444444
Q ss_pred H
Q 011288 148 I 148 (489)
Q Consensus 148 i 148 (489)
.
T Consensus 185 ~ 185 (241)
T KOG0176|consen 185 Y 185 (241)
T ss_pred H
Confidence 4
No 26
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=26.57 E-value=1.9e+02 Score=32.66 Aligned_cols=159 Identities=16% Similarity=0.218 Sum_probs=79.0
Q ss_pred eeEecCCeEechHHHHHHHHHHHHCCCCC------CCCeEEeCCccccchhHHHhHHHHHHHhcCCC-------CCCCCC
Q 011288 130 VCVIGNGVVVHLPGLFNEIDGLEANGVSC------KGRILVSDRAHLLFDFHQEIDGLREAELAKSF-------IGTTRR 196 (489)
Q Consensus 130 ~~vIG~GvVvdp~~L~~Ei~~L~~~Gi~~------~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~-------iGTTgr 196 (489)
+.+|.|+++|--..=.++.+.|++.|+.. -+=+||-..--|-=-|--.++.. .+..+..- -|--|+
T Consensus 90 RVliaN~~lVp~wa~~e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aa-rk~~g~~L~Gk~~lTaGLGGM 168 (546)
T PF01175_consen 90 RVLIANSNLVPNWATWEHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAA-RKHFGGDLAGKLFLTAGLGGM 168 (546)
T ss_dssp SEEEEESEB-GGGGSHHHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHH-HHHSTTS-TT-EEEEE--STT
T ss_pred eEEEEcCcccCCCCCHHHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHH-HHhcCCCCcceEEEEeccccc
Confidence 57899999998888889999999999753 24678877542221233333322 22222221 122233
Q ss_pred cchhhhccccccCCCeE-eeCCCCCcHHHHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHhCC----CccChHHH
Q 011288 197 GIGPAYSSKVIRNGIRV-CDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEP----FITDTVHF 271 (489)
Q Consensus 197 GIGpay~dk~~R~giRv-~DL~~~~~l~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~v~D~~~~ 271 (489)
|=...-+-+++. ++-+ .| .|++.+.+|+++ .. +.....++++.++..+++.++=+| |+.+...+
T Consensus 169 gGAQplA~~m~g-~v~l~vE-vd~~ri~kR~~~------g~---ld~~~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~ 237 (546)
T PF01175_consen 169 GGAQPLAATMAG-GVGLIVE-VDPSRIEKRLEQ------GY---LDEVTDDLDEALARAKEARAKKEPLSIGLLGNAADL 237 (546)
T ss_dssp CCHHHHHHHHTT--EEEEEE-S-HHHHHHHHHT------TS---SSEEESSHHHHHHHHHHHHHTT--EEEEEES-HHHH
T ss_pred ccchHHHHHhcC-ceEEEEE-ECHHHHHHHHhC------CC---eeEEcCCHHHHHHHHHHhhccCCeeEEEEeccHHHH
Confidence 333333434332 3333 34 377777777654 11 222235688888888877777666 57788888
Q ss_pred HHHHHHCCCcEEEEeccchhhcccCCCCC
Q 011288 272 MNESIAQKRKILVEGGQATMLDIDFGTYP 300 (489)
Q Consensus 272 l~~al~~gk~vLfEGAQG~LLDid~GtYP 300 (489)
+.+.++++-.+=+---|=..=|...|.||
T Consensus 238 ~~~l~~~~i~pDl~tDQTS~Hdp~~GY~P 266 (546)
T PF01175_consen 238 WEELVERGIIPDLVTDQTSAHDPLNGYYP 266 (546)
T ss_dssp HHHHHHTT---SEE---SSTT-TTTS---
T ss_pred HHHHHHcCCCCCcccCCCccccccccCCC
Confidence 88888776444444555555565556666
No 27
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=25.66 E-value=1e+02 Score=32.32 Aligned_cols=90 Identities=16% Similarity=0.284 Sum_probs=50.4
Q ss_pred CCCCCCcchhhhcccc-ccCCCeEeeCCCCCcHHHHHHHHHHHH--H----hhccC---CCCCcccHHH-HHHHHHHHHH
Q 011288 191 IGTTRRGIGPAYSSKV-IRNGIRVCDLRHMDTFPQKLDLLLSDA--A----ARFPG---LKYTPDVLRE-EVEKYKRFAE 259 (489)
Q Consensus 191 iGTTgrGIGpay~dk~-~R~giRv~DL~~~~~l~~kL~~~~~~~--~----~~~~~---~~~~~~~~~~-~~~~~~~~~~ 259 (489)
-|++|.|=-. .+.++ .+.|+.. +..-|.+++.++.....- + ..+.. +...|. -++ .+..|..-.+
T Consensus 98 ~G~sgsGKSt-lA~~La~~l~~~~--vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~-~~~~~l~g~~~~~~ 173 (301)
T PRK04220 98 GGASGVGTST-IAFELASRLGIRS--VIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPP-PEPPVIYGFERHVE 173 (301)
T ss_pred ECCCCCCHHH-HHHHHHHHhCCCE--EEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCC-CchhhhhhHHHHHH
Confidence 4777777665 44444 4556652 345678898888765211 1 11111 111122 222 4444444444
Q ss_pred HhCCCccChHHHHHHHHHCCCcEEEEec
Q 011288 260 RLEPFITDTVHFMNESIAQKRKILVEGG 287 (489)
Q Consensus 260 ~l~~~v~D~~~~l~~al~~gk~vLfEGA 287 (489)
.+.+. ....+.+++.+|+++|+||.
T Consensus 174 ~v~~g---i~~~I~~~~~~g~s~IiEGv 198 (301)
T PRK04220 174 PVSVG---VEAVIERALKEGISVIIEGV 198 (301)
T ss_pred HHHHH---HHHHHHHHHHhCCcEEEecC
Confidence 44433 56788899999999999986
No 28
>PF11181 YflT: Heat induced stress protein YflT
Probab=25.01 E-value=1.8e+02 Score=25.09 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=36.8
Q ss_pred CeEechHHHHHHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhc
Q 011288 136 GVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYS 203 (489)
Q Consensus 136 GvVvdp~~L~~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~ 203 (489)
|++=+...++..|++|+.+|+... .|+| +.--....+.+.+.. ....+|.+-.|+.-...
T Consensus 4 gv~~~~~E~~~~I~~L~~~Gy~~d-dI~V------va~d~~~~~~l~~~t-~~~~~~~~~~~~~d~~~ 63 (103)
T PF11181_consen 4 GVYDNEEEALSAIEELKAQGYSED-DIYV------VAKDKDRTERLADQT-DTNTVGASEESFWDKIK 63 (103)
T ss_pred EEECCHHHHHHHHHHHHHcCCCcc-cEEE------EEcCchHHHHHHHhc-CCceeccccccHHHHHH
Confidence 467788999999999999999753 3432 221112235554443 34456776666664443
No 29
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=24.91 E-value=3.1e+02 Score=31.45 Aligned_cols=85 Identities=20% Similarity=0.197 Sum_probs=58.4
Q ss_pred cCCceeEecCCeEechHHHHHHHHHHHHCCCCCCCCeEEeCCccccchhH--HHhHHHHHHH---hcCCCCCCCCCcchh
Q 011288 126 NEDTVCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFH--QEIDGLREAE---LAKSFIGTTRRGIGP 200 (489)
Q Consensus 126 ~~~~~~vIG~GvVvdp~~L~~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H--~~~D~~~E~~---rg~~~iGTTgrGIGp 200 (489)
...+.|+-++. +.+++.+++=+++|.+.|++ +|.|.|-+-+.+|.. ..+..+++.. .+-..|-|.|.|+.-
T Consensus 139 ~~~~i~yt~sp-~~t~e~~~~~ak~l~~~Gad---~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an 214 (596)
T PRK14042 139 AQGAICYTTSP-VHTLDNFLELGKKLAEMGCD---SIAIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASIC 214 (596)
T ss_pred EEEEEEecCCC-CCCHHHHHHHHHHHHHcCCC---EEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHH
Confidence 34556676655 67888888888899998874 699999999999954 4445665542 122467777776655
Q ss_pred hhccccccCCCeEeeC
Q 011288 201 AYSSKVIRNGIRVCDL 216 (489)
Q Consensus 201 ay~dk~~R~giRv~DL 216 (489)
+++ +...|.+.-|.
T Consensus 215 ~la--AieaGad~iD~ 228 (596)
T PRK14042 215 HYE--AVLAGCNHIDT 228 (596)
T ss_pred HHH--HHHhCCCEEEe
Confidence 443 45677777765
No 30
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=22.34 E-value=88 Score=31.21 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=22.8
Q ss_pred eeEecCCeEechHHHHHHHHHHHHCCCCCCCCeEEeCCcc
Q 011288 130 VCVIGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAH 169 (489)
Q Consensus 130 ~~vIG~GvVvdp~~L~~Ei~~L~~~Gi~~~~rL~IS~rAh 169 (489)
.++||.|+|+||+++. ++.+.| .++.||+..|
T Consensus 64 ~~lIGAGTVL~~~q~~----~a~~aG----a~fiVsP~~~ 95 (211)
T COG0800 64 EALIGAGTVLNPEQAR----QAIAAG----AQFIVSPGLN 95 (211)
T ss_pred ccEEccccccCHHHHH----HHHHcC----CCEEECCCCC
Confidence 4689999999999983 334455 3577777543
No 31
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=20.13 E-value=1.3e+02 Score=29.14 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=46.2
Q ss_pred CCCCCcchhhhcccc-ccCCCeEeeCCCCCcHHHHHHHHHHHHHhhccC-C----CCCcccHHHHHHHHHHHHHHhCCCc
Q 011288 192 GTTRRGIGPAYSSKV-IRNGIRVCDLRHMDTFPQKLDLLLSDAAARFPG-L----KYTPDVLREEVEKYKRFAERLEPFI 265 (489)
Q Consensus 192 GTTgrGIGpay~dk~-~R~giRv~DL~~~~~l~~kL~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~l~~~v 265 (489)
|+.|-|=+- .+..+ .+.|+.. +...|.+++.++.....-...... + -..+...+.++..|..-.+.+.+.+
T Consensus 10 G~~G~GKst-~a~~l~~~~~~~~--~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~v~~~L 86 (197)
T PRK12339 10 GIPGVGKTS-ISGYIARHRAIDI--VLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARAIMPGI 86 (197)
T ss_pred CCCCCCHHH-HHHHHHHhcCCeE--EehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHHHHHHH
Confidence 555555442 22222 3456543 344556777776544211000001 0 0112223455666666555554443
Q ss_pred cChHHHHHHHHHCCCcEEEEecc
Q 011288 266 TDTVHFMNESIAQKRKILVEGGQ 288 (489)
Q Consensus 266 ~D~~~~l~~al~~gk~vLfEGAQ 288 (489)
..++..++.+|..+++||.-
T Consensus 87 ---~~va~~~l~~G~sVIvEgv~ 106 (197)
T PRK12339 87 ---NRVIRRALLNGEDLVIESLY 106 (197)
T ss_pred ---HHHHHHHHHcCCCEEEEecC
Confidence 45556788899999999963
Done!