Query 011288
Match_columns 489
No_of_seqs 154 out of 1017
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:02:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dj2_A Adenylosuccinate synthe 100.0 4E-169 1E-173 1313.3 40.8 437 53-489 7-443 (443)
2 3hid_A Adenylosuccinate synthe 100.0 2E-166 5E-171 1292.9 34.5 425 64-489 1-426 (432)
3 3ue9_A Adenylosuccinate synthe 100.0 2E-165 5E-170 1289.9 31.5 423 65-489 15-446 (452)
4 2v40_A Adenylosuccinate synthe 100.0 1E-164 3E-169 1282.9 33.8 421 64-489 30-458 (459)
5 1p9b_A Adenylosuccinate synthe 100.0 1E-163 3E-168 1270.6 36.7 420 60-488 10-435 (442)
6 3r7t_A Adenylosuccinate synthe 100.0 1E-163 4E-168 1266.0 32.7 415 64-489 4-419 (419)
7 2d7u_A Adenylosuccinate synthe 100.0 3E-139 1E-143 1055.8 23.9 330 66-488 2-334 (339)
8 1qp2_A Protein (PSAE protein); 31.0 12 0.0004 30.0 0.3 32 75-106 18-49 (70)
9 1hyw_A GPW, head-TO-tail joini 24.0 1.7E+02 0.0059 22.9 6.0 42 397-473 16-57 (68)
10 3oig_A Enoyl-[acyl-carrier-pro 21.7 42 0.0014 31.1 2.3 40 191-230 13-53 (266)
No 1
>1dj2_A Adenylosuccinate synthetase; GDP, ligase; HET: GDP; 2.90A {Arabidopsis thaliana} SCOP: c.37.1.10 PDB: 1dj3_A*
Probab=100.00 E-value=3.6e-169 Score=1313.27 Aligned_cols=437 Identities=87% Similarity=1.383 Sum_probs=420.5
Q ss_pred cccCCccccccCCceEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeE
Q 011288 53 TANELPSQIESLSQVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCV 132 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~v 132 (489)
++.+++.|+..+++++||||+|||||||||||||||+++|+|||||||+||||||++++|+||+|||||||||||+++|+
T Consensus 7 ~~~~~~~~~~~~~~v~vVvG~QWGDEGKGKivD~La~~~dvVvR~qGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~v 86 (443)
T 1dj2_A 7 AATESLGRIGSLSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILNEDTTCV 86 (443)
T ss_dssp --------CTTSCSEEEEEESSSSCSSHHHHHHHHGGGCSEEEECSCCTTCCEEEECSSCCEEEESSSCGGGGSTTCEEE
T ss_pred CCCCCCCCCCCccceEEEEeCCcCCCCCceEEeeeccCCCEEEecCccCCCCcEEEEeCCEEEEEEccCccccCCCceEE
Confidence 44577888888888999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred ecCCeEechHHHHHHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCe
Q 011288 133 IGNGVVVHLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIR 212 (489)
Q Consensus 133 IG~GvVvdp~~L~~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giR 212 (489)
|||||||||+.|++||+.|+++|+++.+||+||+|||||||||+++|+++|.+++.++||||||||||||+||++|.|||
T Consensus 87 IGnGvVvdp~~L~~Ei~~L~~~G~~v~~rL~Is~rahli~p~H~~lD~~~E~~~g~~~IGTTgrGIGPaY~dK~~R~giR 166 (443)
T 1dj2_A 87 IGNGVVVHLPGLFKEIDGLESNGVSCKGRILVSDRAHLLFDFHQEVDGLRESELAKSFIGTTKRGIGPAYSSKVIRNGIR 166 (443)
T ss_dssp ECTTCEECHHHHHHHHHHHHTTTCCCTTTEEEESSSEECCHHHHHHHHHHHHHSCSCCCCCCSCCHHHHHHHHHHTCCCB
T ss_pred ECCcEEEcHHHHHHHHHHHHHcCCCCCCCEEEcCCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCcHHHhHhhhhccCcE
Confidence 99999999999999999999999877799999999999999999999999999998999999999999999999999999
Q ss_pred EeeCCCCCcHHHHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhh
Q 011288 213 VCDLRHMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATML 292 (489)
Q Consensus 213 v~DL~~~~~l~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LL 292 (489)
++||+|++.|++||+.++++++.++..+..++.++++++++|++|+++|+|||+|+..+|++++++||+||||||||+||
T Consensus 167 v~DL~d~~~~~~kl~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~p~v~D~~~~l~~a~~~gk~vLfEGAQG~lL 246 (443)
T 1dj2_A 167 VGDLRHMDTLPQKLDLLLSDAAARFQGFKYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQATML 246 (443)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHTTTEECHHHHHHHHHHTTCCEEEEEEEEGGG
T ss_pred eecccCHHHHHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHCCCeEEEEecchhhh
Confidence 99999999999999999999999998865555789999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccCCCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccc
Q 011288 293 DIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCG 372 (489)
Q Consensus 293 Did~GtYP~VTSSntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~G 372 (489)
|+|||||||||||||+++|+|+|+|++|+.|++||||+|||+||||+||||||++++.|+.||+.|+|||+|||||||||
T Consensus 247 DiD~GtYPyVTSSnttagga~~G~Gi~P~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~l~~~G~E~GttTGR~RRcG 326 (443)
T 1dj2_A 247 DIDFGTYPFVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQEFGTTTGRPRRCG 326 (443)
T ss_dssp CTTTSSTTSSCSSCCSTHHHHHTTTCCTTTCCCEEEEEESEEEESSSSCCTTBCCSHHHHHHHHHHTCBCTTTCCBCEEE
T ss_pred hhccCcCcCCCCCcchHhhhhhccCCCcccCCeEEEEEEecCCcccCCCCCCcCCchhhHHhhhcCCeeCCCCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCC
Q 011288 373 WLDVVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNY 452 (489)
Q Consensus 373 wlDlv~lrya~~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~ 452 (489)
|||+|++|||+++||+|+|+||||||||+|++||||++|++++|+++++||++++.|++|+||||+||||++|++++|+|
T Consensus 327 WfD~v~lrya~~inG~t~lalTkLDvLd~~~~ikicv~Y~~~~G~~~~~~P~~~~~l~~~~PvYe~~pGW~~~~~~~r~~ 406 (443)
T 1dj2_A 327 WLDIVALKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVKSFPGDLRLLEELHVEYEVLPGWKSDISSVRNY 406 (443)
T ss_dssp EEEHHHHHHHHHHHTCSEEEEECGGGGGGCSEEEEEEEEECSSSCBCCSCCSCHHHHHHCEEEEEEEECCCSCCTTCCSS
T ss_pred cchHHHHHHHHHHcCCCeEEEECcCcCCCCCceeEEEEEEcCCCeEeeeCCCChHHhccceEEEEECCCCCcccccCcch
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhCCCeEEEeeCCCccccccC
Q 011288 453 SDLPKGAREFVERIEELVGVPINYIGVGPGRDALIYK 489 (489)
Q Consensus 453 ~~LP~~a~~yi~~IE~~~gvpi~~isvGP~R~~~i~~ 489 (489)
++||+|||+||++||+++|+||.|||+||+|+|||.|
T Consensus 407 ~~LP~~a~~Yi~~iEe~~gvpv~~is~GP~R~~ti~r 443 (443)
T 1dj2_A 407 SDLPKAAQQYVERIEELVGVPIHYIGIGPGRDALIYK 443 (443)
T ss_dssp TTSCHHHHHHHHHHHHHHCSCEEEEECSSSSSCEEEC
T ss_pred hhCCHHHHHHHHHHHHHHCCCEEEEEeCCCHHHeecC
Confidence 9999999999999999999999999999999999976
No 2
>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence associated factor, PURA, purine ribonucleotide biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92} SCOP: c.37.1.10 PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A* 1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A* 1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A* ...
Probab=100.00 E-value=1.5e-166 Score=1292.88 Aligned_cols=425 Identities=44% Similarity=0.756 Sum_probs=406.5
Q ss_pred CCceEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHH
Q 011288 64 LSQVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPG 143 (489)
Q Consensus 64 ~~~~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~ 143 (489)
|++.++|||+|||||||||||||||+++|+|||||||+||||||+ ++|+||+|||||||+|||+++|+|||||||||++
T Consensus 1 M~~~~vVvG~QwGDEGKGKivD~La~~~dvVvR~qGG~NAGHTVv-~~g~k~~lhliPSGil~~~~~~vIGnGvVvdp~~ 79 (432)
T 3hid_A 1 MGKNVVVLGTQWGDEGKGKVVDLLTERAKYVVRYQGGHNAGHTLV-INGEKTVLHLIPSGILRENVISIIGNGVVLAPDA 79 (432)
T ss_dssp CCCCEEEEESSSSCSCHHHHHHHHHTTCSEEEECSBCSCCCEEEE-ETTEEEEESSSCTTTTSTTCEEEECTTBCBCHHH
T ss_pred CCccEEEEcCCcccCCCceeeeeecCcCCEEEEcCCcCCCCCeEE-ECCEEEEEEecCceecCCCCeEEEcCCEEEcHHH
Confidence 344679999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHH
Q 011288 144 LFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFP 223 (489)
Q Consensus 144 L~~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~ 223 (489)
|++||+.|+++|++..+||+||+|||||||||+++|+++|.+++.++||||||||||||+||++|+|||++||+|++.|+
T Consensus 80 l~~Ei~~L~~~Gv~~~~rL~Is~rahli~p~H~~lD~~~E~~~g~~~iGTTgrGIGPaY~dK~~R~giRv~DL~~~~~~~ 159 (432)
T 3hid_A 80 LMKEMTELEARGVPVRERLLLSEACPLILPYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVSDLFNKETFA 159 (432)
T ss_dssp HHHHHHHHHHTTCCHHHHEEECTTCBBCCHHHHHHHHHHHHTCC--------TTHHHHHHHHHHTCSCBGGGGGSHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCEEECCCceECChHHHHhhhhhHhhcCCCCcCCCCCCcHHHhhhhccccCceeehhcCHHHHH
Confidence 99999999999998658999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-CCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCcc
Q 011288 224 QKLDLLLSDAAARFPG-LKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFV 302 (489)
Q Consensus 224 ~kL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~V 302 (489)
+||+.++++++.++.. ++..+.++++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||+||||||||
T Consensus 160 ~kl~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~l~p~v~D~~~~l~~a~~~gk~iLfEGAQG~lLDiD~GtYP~V 239 (432)
T 3hid_A 160 IKLKEIVEYHNFQLVHYYKEAAVDYQKVLDDVLAIADILTAMVVDVSELLDNARKQGELIMFEGAQGTLLDIDHGTYPYV 239 (432)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCCCCHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHTTCCEEEECCSCGGGCTTTSSTTSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHCCCeEEEEecchhhhccccCcCCCc
Confidence 9999999999988875 466677899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHH
Q 011288 303 TSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYC 382 (489)
Q Consensus 303 TSSntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlDlv~lrya 382 (489)
|||||+++|+|+|+|++|+.|++||||+|||+||||+||||||++++.|+.||+.|+|||+||||||||||||+|++|||
T Consensus 240 TSSnt~agga~~g~Gi~p~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~lr~~G~E~G~tTGR~RRcGW~D~v~lrya 319 (432)
T 3hid_A 240 TSSNTTAGGVATGSGLGPRYVDYVLGIVKAYSTRVGAGPFPTELNDETGEFLRKQGNEYGATTGRSRRTGWLDIVAVRRA 319 (432)
T ss_dssp CSSCCSGGGHHHHHCCCGGGCCEEEEEEESEEEECSSSCCTTBCCSHHHHHHHHHTTCCCSSTTCCCEEEEEEHHHHHHH
T ss_pred CCCCcchhhHhhccCCCchhcceEEEEEEECcccccCCCCCCccCcchHHHHHhcCCccCCcCCCCccccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHH
Q 011288 383 CQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREF 462 (489)
Q Consensus 383 ~~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~y 462 (489)
+++||+|+||||||||||+|++||||++|++++|+++++||++++.|++|+|||++||||++|++++|+|++||+|||+|
T Consensus 320 ~~inG~t~lalTkLDvLd~~~~ikvcv~Y~~~~G~~~~~~P~~~~~l~~~~pvYe~~pGW~~~~~~~~~~~~LP~~a~~Y 399 (432)
T 3hid_A 320 VQINSLSGFCMTKLDVLDGLKEVKLCVGYRMPDGREVDTTPLAAEGWEGIEPIYETMPGWSETTFGVKEHSKLPQAALNY 399 (432)
T ss_dssp HHHHTCCEEEEECGGGGTTCSEEEEEEEEECTTSCEESSCCCTTTCSTTCEEEEEEEECCSSCSTTCCSGGGSCHHHHHH
T ss_pred HHhcCCCeEEEecceecCCCCceeEEEEEEcCCCeEEeeCCCCHHHhCCceEEEEeCCCCccccccCCChhHcCHHHHHH
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEeeCCCccccccC
Q 011288 463 VERIEELVGVPINYIGVGPGRDALIYK 489 (489)
Q Consensus 463 i~~IE~~~gvpi~~isvGP~R~~~i~~ 489 (489)
|++||+++|+||+|||+||+|+|||.+
T Consensus 400 i~~iEe~~gvpv~~is~GP~R~~~I~~ 426 (432)
T 3hid_A 400 IQRVEELTGVPIDIISTGPDRDETMIL 426 (432)
T ss_dssp HHHHHHHHSCCEEEEECSSBTTSEEES
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHeEec
Confidence 999999999999999999999999864
No 3
>3ue9_A Adenylosuccinate synthetase; ssgcid, ligase, ADSS, BTH_I2245, IMP-aspartate ligase, struc genomics; 1.95A {Burkholderia thailandensis}
Probab=100.00 E-value=1.6e-165 Score=1289.86 Aligned_cols=423 Identities=44% Similarity=0.735 Sum_probs=397.5
Q ss_pred CceEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHHH
Q 011288 65 SQVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPGL 144 (489)
Q Consensus 65 ~~~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~L 144 (489)
++.++|||+|||||||||||||||+++|+|||||||+||||||+ ++|+||+|||||||+|||+++|+|||||||||++|
T Consensus 15 M~~~vVvG~QwGDEGKGKivD~La~~~dvVvR~qGG~NAGHTVv-~~g~k~~lhllPSGil~~~~~~vIGnGvVvdp~~l 93 (452)
T 3ue9_A 15 GRNVVVVGTQWGDEGKGKIVDWLTDHAQGVVRFQGGHNAGHTLI-IGGKKTILRLIPSGIMREGVACYIGNGVVLSPEAL 93 (452)
T ss_dssp TCCEEEEESSSSCSCHHHHHHHHHTTCSEEEECSBCCC--CC-----CCCCCCSSSCGGGGSTTCEEEECTTBEECHHHH
T ss_pred cceEEEEeCCcccCCCceeeeeecCcCCEEEEcCCcCCCCceEE-ECCEEEEEEecCceeccCCCcEEEcCCEEEcHHHH
Confidence 45679999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHHH
Q 011288 145 FNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFPQ 224 (489)
Q Consensus 145 ~~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~~ 224 (489)
++||+.|+++|++..+||+||+|||||||||+++|+++|.+++.++||||||||||||+||++|+|||++||+|++.|++
T Consensus 94 ~~Ei~~L~~~Gv~~~~rL~Is~rahli~p~H~~lD~~~E~~~g~~~iGTTgrGIGPaY~dK~~R~giRv~DL~d~~~~~~ 173 (452)
T 3ue9_A 94 FKEIGELEEAGLSVRERLFISEATTLILPYHIAIDQAREARKGAGKIGTTGRGIGPAYEDKVGRRALRVQDLFDARTFAD 173 (452)
T ss_dssp HHHHHHHHHTTCCCGGGEEEETTCEECCHHHHHHHHHHHHC----------CCHHHHHHHHHTTCCCBGGGGGCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCEEECCCceECCHHHHHhhhhhhhhccCCccccCCCCcHHHhhhhccccCceeehhcCHHHHHH
Confidence 99999999999987689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccC-CCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCccc
Q 011288 225 KLDLLLSDAAARFPG-LKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVT 303 (489)
Q Consensus 225 kL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~VT 303 (489)
||+.++++++.++.. ++..+.++++++++|++|+++|+|||+|+..+|++++++||+||||||||+|||+|||||||||
T Consensus 174 kl~~~~~~~~~~l~~~~~~~~~d~e~~~~~~~~~~~~l~p~v~D~~~~l~~a~~~gk~ILfEGAQG~lLDiD~GtYPyVT 253 (452)
T 3ue9_A 174 RLRENLDFHNFVLTQYLGGAAVDFQATLDTMLGYADRLRPMVADVSRRLYEENHAGRNLLFEGAQGTLLDIDHGTYPFVT 253 (452)
T ss_dssp HHHHHHHHHHHHHHHTSCCCCCCHHHHHHHHHTTHHHHGGGEECHHHHHHHHHHTTCCEEEECCSCGGGCTTTSSTTSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHcCCcEEEEecchhhhccccCcCCCcC
Confidence 999999999988875 4556678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCC--------CccchhhhccCCCCCCCCCCCccccch
Q 011288 304 SSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFG--------QGGDRLRLAGQEFGTTTGRPRRCGWLD 375 (489)
Q Consensus 304 SSntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~--------~~g~~lr~~g~E~GttTGRpRR~GwlD 375 (489)
||||+++|+|+|+|++|+.|++||||+|||+||||+||||||+++ +.|+.||+.|+|||+||||||||||||
T Consensus 254 SSnt~agga~~G~Gi~P~~i~~ViGV~KAYtTRVG~GPFPTEl~~~~~~~~~~e~g~~Lr~~G~E~GttTGR~RRcGW~D 333 (452)
T 3ue9_A 254 SSNCVAGAAAAGAGVGPQKLNYILGITKAYCTRVGSGPFPSELYDADNPSRQDQIGITLANVGKEFGSVTGRPRRTGWLD 333 (452)
T ss_dssp SSCCSTTHHHHHHTCCGGGCCEEEEEEESEEEECSSSCCTTEEECTTCTTCBCHHHHHHHHHTTCBCTTTCCBCEEEEEE
T ss_pred CCCcchhhHhhccCCCchhcceEEEEEEeccccccCCCCCccccccccccccccHHHHHhhcCCCcCCcCCCCccCcccc
Confidence 999999999999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred HHHHHHHHHhcCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCC
Q 011288 376 VVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDL 455 (489)
Q Consensus 376 lv~lrya~~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~L 455 (489)
+|++|||+++||+|+||||||||||+|++||||++|++ +|+++++||++++.|++|+|||++||||++|++++|+|+||
T Consensus 334 ~v~lrya~~inG~t~lalTkLDvLd~~~~ikvcvaY~~-~G~~~~~~P~~~~~l~~~~pvYe~~pGW~~~~~~~r~~~~L 412 (452)
T 3ue9_A 334 AAALRRSIQINGVSGLCMTKLDVLDGLDEVKLCVGYKI-DGEDADLLPRGAAEVARCEPVYETFGGWKESTVGINSWDAL 412 (452)
T ss_dssp HHHHHHHHHHHTCCEEEEECGGGGTTCSEEEEEEEEEE-TTEEECSCCSSHHHHHHCEEEEEEEECCCSCCTTCCSGGGS
T ss_pred HHHHHHHHHHcCCCeEEEecchhhcCCCceeEEEEEec-CCEEEecCCCCHHHhCCcEEEEEeCCCCccccccCCChhHc
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCeEEEeeCCCccccccC
Q 011288 456 PKGAREFVERIEELVGVPINYIGVGPGRDALIYK 489 (489)
Q Consensus 456 P~~a~~yi~~IE~~~gvpi~~isvGP~R~~~i~~ 489 (489)
|+|||+||++||+++|+||+|||+||+|+|||.+
T Consensus 413 P~~a~~Yi~~IEe~~gvpV~~is~GP~R~~~I~~ 446 (452)
T 3ue9_A 413 PANARAYLTRVQEVAGVPIDMVSTGPDRDETILL 446 (452)
T ss_dssp CHHHHHHHHHHHHHHTSCEEEEECSSSTTSEEES
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEcCCCHHHeeec
Confidence 9999999999999999999999999999999864
No 4
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis, metal- binding, purine metabolism, nucleotide-binding, GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens} PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A* 1mf0_A* 1mf1_A* 2dgn_A*
Probab=100.00 E-value=9.8e-165 Score=1282.93 Aligned_cols=421 Identities=50% Similarity=0.928 Sum_probs=402.6
Q ss_pred CCceEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHH
Q 011288 64 LSQVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPG 143 (489)
Q Consensus 64 ~~~~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~ 143 (489)
.++++||||+|||||||||||||||+++|+|||||||+||||||+ ++|+||+|||||||||+|+++|+|||||||||+.
T Consensus 30 ~~~v~vVvG~QWGDEGKGKivD~La~~~dvVvR~qGG~NAGHTVv-~~g~k~~lhliPSGil~~~~~~vIGnGvVvdp~~ 108 (459)
T 2v40_A 30 GNRVTVVLGAQWGDEGKGKVVDLLAQDADIVCRCQGGNNAGHTVV-VDSVEYDFHLLPSGIINPNVTAFIGNGVVIHLPG 108 (459)
T ss_dssp CCCEEEEEESSSSCSSHHHHHHHHHTTCSEEEECSBCSCCCEEEE-ETTEEEEESSSCGGGGSTTCEEEECTTBEEEHHH
T ss_pred CeeEEEEEecCcCCCCCceEEEEeccCCCEEeecCccCCCCcEEE-ECCEEEEEEccCccccCCCceEEECCcEEEcHHH
Confidence 356789999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--CCCC-CCCCeEEeCCccccchhHHHhHHHHHHHhcCCC---CCCCCCcchhhhccccccCCCeEeeCC
Q 011288 144 LFNEIDGLEA--NGVS-CKGRILVSDRAHLLFDFHQEIDGLREAELAKSF---IGTTRRGIGPAYSSKVIRNGIRVCDLR 217 (489)
Q Consensus 144 L~~Ei~~L~~--~Gi~-~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~---iGTTgrGIGpay~dk~~R~giRv~DL~ 217 (489)
|++||+.|++ +|++ +.+||+||+|||||||||+++|+++|.+++..+ ||||||||||||+||++|.|||++||+
T Consensus 109 L~~Ei~~L~~~~~Gv~~~~~rL~IS~rahli~p~H~~lD~~~E~~~g~~~~~~IGTTgrGIGPaY~DK~~R~giRv~DL~ 188 (459)
T 2v40_A 109 LFEEAEKNVQKGKGLEGWEKRLIISDRAHIVFDFHQAADGIQEQQRQEQAGKNLGTTKKGIGPVYSSKAARSGLRMCDLV 188 (459)
T ss_dssp HHHHHHHHHHHCGGGTTGGGSEEEETTCEEECHHHHHHHHHHHHC------------CCCHHHHHHHHHHTCCCBHHHHT
T ss_pred HHHHHHHHHhhhcCCCCCCCCEEEeCCccCCCccHHHhhHHHHHhcCCCCCCCcCCCCCCcHHHHHhhhhccccEeehhc
Confidence 9999999999 8864 568999999999999999999999999998777 999999999999999999999999997
Q ss_pred -CCCcHHHHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHH-HCCCcEEEEeccchhhccc
Q 011288 218 -HMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESI-AQKRKILVEGGQATMLDID 295 (489)
Q Consensus 218 -~~~~l~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al-~~gk~vLfEGAQG~LLDid 295 (489)
|++.|++||+.+++++|.++..+. .++++++++|++|+++|+|||+|+..+|++|+ ++||+||||||||+|||+|
T Consensus 189 ~d~~~~~~kl~~~~~~~n~~l~~~~---~d~~~~~~~~~~~~~~l~p~v~D~~~~l~~a~~~~gk~VLfEGAQG~lLDiD 265 (459)
T 2v40_A 189 SDFDGFSERFKVLANQYKSIYPTLE---IDIEGELQKLKGYMEKIKPMVRDGVYFLYEALHGPPKKILVEGANAALLDID 265 (459)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTTCC---CCHHHHHHHHHHHHHHHGGGEECHHHHHHHHHHSSCCCEEEECCSCGGGCTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHhCCCEEEEEechhhhhhcc
Confidence 999999999999999999999873 67999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCcccCCCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccch
Q 011288 296 FGTYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLD 375 (489)
Q Consensus 296 ~GtYP~VTSSntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlD 375 (489)
||||||||||||+++|+|+|+|++|+.|++||||+|||+||||+||||||++++.|+.||+.|+|||+||||||||||||
T Consensus 266 ~GTYPyVTSSnttagga~~G~Gi~P~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~L~~~G~E~GttTGR~RRcGWfD 345 (459)
T 2v40_A 266 FGTYPFVTSSNCTVGGVCTGLGMPPQNVGEVYGVVKAYTTRVGIGAFPTEQDNEIGELLQTRGREFGVTTGRKRRCGWLD 345 (459)
T ss_dssp TSSTTSSCSSCCSTHHHHHHHTCCGGGEEEEEEEEESSEEESSSSCCTTBCCSHHHHHHHHHTTCBCTTTCCBCEEECEE
T ss_pred cCcCcCCCCCcchHhhhhhccCCCcccCCeEEEEEeeccceecCCCCCcccChhHHHHhhhcCCcccCCCCCCcccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCC
Q 011288 376 VVALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDL 455 (489)
Q Consensus 376 lv~lrya~~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~L 455 (489)
+|++|||+++||+|+||||||||||+|++||||++|++ +|+++++||++++.|++|+||||+||||++|++++|+|+||
T Consensus 346 ~v~lrya~~inG~t~lalTKLDvLd~l~~ikvcvaY~~-~G~~~~~~P~~~~~l~~~~PvYe~~pGW~~d~~~~r~~~dL 424 (459)
T 2v40_A 346 LVLLKYAHMINGFTALALTKLDILDMFTEIKVGVAYKL-DGEIIPHIPANQEVLNKVEVQYKTLPGWNTDISNARAFKEL 424 (459)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGGGGCSEEEEEEEEEE-TTEEESSCCSSHHHHTTCEEEEEEEECCCSCCTTCCSGGGS
T ss_pred HHHHHHHHHHcCCCeEEEECcCcCCCCCeeeEEEEEee-CCEEeeeCCCChHHhhcceEEEEECCCCCcccccccchhhC
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCeEEEeeCCCccccccC
Q 011288 456 PKGAREFVERIEELVGVPINYIGVGPGRDALIYK 489 (489)
Q Consensus 456 P~~a~~yi~~IE~~~gvpi~~isvGP~R~~~i~~ 489 (489)
|+|||+||++||+++|+||.|||+||+|+|||.+
T Consensus 425 P~~A~~Yi~~IEe~~gvpV~~is~GP~R~~ti~~ 458 (459)
T 2v40_A 425 PVNAQNYVRFIEDELQIPVKWIGVGKSRESMIQL 458 (459)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECSSSTTSEEEC
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEeCCCHHHeecc
Confidence 9999999999999999999999999999999863
No 5
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A {Plasmodium falciparum} SCOP: c.37.1.10
Probab=100.00 E-value=9.9e-164 Score=1270.64 Aligned_cols=420 Identities=44% Similarity=0.803 Sum_probs=403.7
Q ss_pred ccccCCceEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEe
Q 011288 60 QIESLSQVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVV 139 (489)
Q Consensus 60 ~~~~~~~~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVv 139 (489)
-++.+ +++||||+|||||||||||||||+++|+|||||||+||||||+ ++|+||+|||||||||+|+++|+|||||||
T Consensus 10 ~~~~~-~~vvVvG~QWGDEGKGKivD~La~~~d~VvR~qGG~NAGHTVv-~~g~k~~lhliPSGil~~~~~~vIGnGvVv 87 (442)
T 1p9b_A 10 NVDKG-NVVAILGAQWGDEGKGKIIDMLSEYSDITCRFNGGANAGHTIS-VNDKKYALHLLPCGVLYDNNISVLGNGMVI 87 (442)
T ss_dssp ----C-CEEEEEESSSSCSSHHHHHHHHGGGCSEEEECSCCTTCCEEEE-ETTEEEEESSSCTTTTSTTCEEEECTTCEE
T ss_pred ccccc-CceEEEcCCcCCCCCceEEeeecccCCEEEEcCccCCCCcEEE-ECCEEEEEEecCccccCCCceEEECCcEEE
Confidence 34444 5569999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHh--cCCCCCCCCCcchhhhccccccCCCeEeeCC
Q 011288 140 HLPGLFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAEL--AKSFIGTTRRGIGPAYSSKVIRNGIRVCDLR 217 (489)
Q Consensus 140 dp~~L~~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~r--g~~~iGTTgrGIGpay~dk~~R~giRv~DL~ 217 (489)
||+.|++||+.|+++ ++ +||+||+|||||||||+++|+++|.++ |.++||||||||||||+||++|.|||++||+
T Consensus 88 dp~~L~~Ei~~L~~~-v~--~rL~IS~rahli~p~H~~lD~~~E~~~~~g~~~IGTTgrGIGPaY~dK~~R~giRv~DL~ 164 (442)
T 1p9b_A 88 HVKSLMEEIESVGGK-LL--DRLYLSNKAHILFDIHQIIDSIQETKKLKEGKQIGTTKRGIGPCYSTKASRIGIRLGTLK 164 (442)
T ss_dssp CHHHHHHHHHHHCTT-GG--GGEEEETTSEECCHHHHHHHHHHHHHHHHTTCCCCCCSSSHHHHHHHHHTTCCCBGGGGG
T ss_pred cHHHHHHHHHHHHhh-cc--CCEEECCCccCCChhHHHHHHHhHHhhhcCCCCCCCCCCCcHHHHHHHHhccccEehHhc
Confidence 999999999999887 54 899999999999999999999999999 8889999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCC
Q 011288 218 HMDTFPQKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFG 297 (489)
Q Consensus 218 ~~~~l~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~G 297 (489)
|++.|++||+.+++++...+ +.++.++++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||+|||
T Consensus 165 d~~~~~~kl~~~~~~~~~~y---~~~~~d~~~~~~~~~~~~~~l~p~v~D~~~~l~~a~~~gk~vLfEGAQG~lLDiD~G 241 (442)
T 1p9b_A 165 NFENFKNMYSKLIDHLMDLY---NITEYDKEKELNLFYNYHIKLRDRIVDVISFMNTNLENNKKVLIEGANAAMLDIDFG 241 (442)
T ss_dssp SHHHHHHHHHHHHHHHHHHT---TCCCCCHHHHHHHHHHHHHHHGGGEECHHHHHHHHHHTTCCEEEECCSCGGGCTTTS
T ss_pred CHHHHHHHHHHHHHHHHhhc---CCCCCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHCCCeEEEEeccHhhhhhcCC
Confidence 99999999999999995543 345677999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHH
Q 011288 298 TYPFVTSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVV 377 (489)
Q Consensus 298 tYP~VTSSntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlDlv 377 (489)
||||||||||+++|+|+|+|++|+.|++||||+|||+||||+||||||++++.|+.||+.|+|||+||||||||||||+|
T Consensus 242 tYPyVTSSnttagga~~G~Gi~P~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~lr~~G~E~GttTGR~RRcGWfD~v 321 (442)
T 1p9b_A 242 TYPYVTSSCTTVGGVFSGLGIHHKKLNLVVGVVKSYLTRVGCGPFLTELNNDVGQYLREKGHEYGTTTKRPRRCGWLDIP 321 (442)
T ss_dssp STTSSCSSCCSHHHHHHTTTCCGGGCCEEEEEEESSEEECSSSCCTTBCCSHHHHHHHHHTTCBCTTTCCBCEEECEEHH
T ss_pred cCcCccCccchHhHHHhccCCCcccCCeEEEEEeeccceecCCCCCcccchHHHHHHHhcCCeeCCcCCCCccCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcceEeeecccccCCCCCcEEEeeee--cCCCcccc--cCCcChhhhccCeEEEEEcCCcccccccccCCC
Q 011288 378 ALKYCCQINGLSSLNLTKLDVLSELPEIQLGVAYK--QFDGTPVK--SFPADLLLLEQLKVEYEVLPGWQSDISSVRNYS 453 (489)
Q Consensus 378 ~lrya~~ing~~~lalTkLDvL~~~~~IkIcv~Y~--~~~G~~~~--~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~ 453 (489)
++|||+++||+|+|+||||||||+|++||||++|+ + +|++++ +||++++.|++|+||||+||||++|++++|+|+
T Consensus 322 ~lrya~~inG~t~lalTkLDvLdgl~~ikicv~Y~~~~-~G~~~~~~~~P~~~~~l~~~~PvYe~~pGW~~~~~~~r~~~ 400 (442)
T 1p9b_A 322 MLLYVKCINSIDMINLTKLDVLSGLEEILLCVNFKNKK-TGELLEKGCYPVEEEISEEYEPVYEKFSGWKEDISTCNEFD 400 (442)
T ss_dssp HHHHHHHHHCCSEEEEECGGGGTTCSEEEEEEEEEETT-TCCBCCTTCCCCSHHHHTTEEEEEEEEECCCSCCTTCCSGG
T ss_pred HHHHHHHHcCCCeEeeecccccCCCCceeEEEEEeecc-CCEEeecCcCCCChHHhccceEEEEECCCCCcccccccchh
Confidence 99999999999999999999999999999999999 8 999999 999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhCCCeEEEeeCCCcccccc
Q 011288 454 DLPKGAREFVERIEELVGVPINYIGVGPGRDALIY 488 (489)
Q Consensus 454 ~LP~~a~~yi~~IE~~~gvpi~~isvGP~R~~~i~ 488 (489)
+||+|||+||++||+++|+||.|||+||+|+|+|.
T Consensus 401 ~LP~~a~~Yi~~IEe~~gvpv~~is~GP~R~~ii~ 435 (442)
T 1p9b_A 401 ELPENAKKYILAIEKYLKTPIVWIGVGPNRKNMIV 435 (442)
T ss_dssp GSCHHHHHHHHHHHHHHTCCEEEEECSSSTTCEEE
T ss_pred hCCHHHHHHHHHHHHHHCCCEEEEEeCCCHHHeec
Confidence 99999999999999999999999999999999664
No 6
>3r7t_A Adenylosuccinate synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol; HET: CIT PGE; 2.30A {Campylobacter jejuni} SCOP: c.37.1.0
Probab=100.00 E-value=1.2e-163 Score=1266.00 Aligned_cols=415 Identities=44% Similarity=0.788 Sum_probs=395.4
Q ss_pred CCceEEEEcCCCccCCchhhHhhhccCCCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHH
Q 011288 64 LSQVSGVLGSQWGDEGKGKLVDILAEHFDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPG 143 (489)
Q Consensus 64 ~~~~~vVvG~qwGDEGKGKivD~La~~~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~ 143 (489)
|++.++|||+|||||||||||||||+++|+|||||||+||||||+ ++|+||+|||||||+|+|+++|+|||||||||++
T Consensus 4 M~~~~vVvG~QwGDEGKGKivD~La~~~dvVvR~qGG~NAGHTVv-~~g~k~~lhliPSGil~~~~~~vIGnGvVvdp~~ 82 (419)
T 3r7t_A 4 MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTIW-VNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEV 82 (419)
T ss_dssp CCCEEEEEECSSSCSCHHHHHHHHHTTCSEEEECSBCTTSSEEEE-ETTEEEEESSSCGGGGSTTCEEEECTTBEECHHH
T ss_pred CcceeEEEeCCcccCCCceeeeeecccCCEEEEcCCcCCCCcEEE-ECCEEEEEEecCceEcCCCCeEEECCCEEEcHHH
Confidence 444789999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHH
Q 011288 144 LFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFP 223 (489)
Q Consensus 144 L~~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~ 223 (489)
|++||+.|++ ++ +||+||+|||||||||+++|+++|.++|.++||||||||||||+||++|.|||++||+|++.|+
T Consensus 83 l~~Ei~~L~~--v~--~rL~Is~rahli~p~H~~~D~~~E~~~g~~~iGTTgrGIGPaY~dK~~R~giRv~DL~~~~~~~ 158 (419)
T 3r7t_A 83 LIAEMAQFEN--LK--GRLYISDRAHLNLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLC 158 (419)
T ss_dssp HHHHHTTSSC--CT--TTEEEETTSEECCHHHHHHHHHHHHHCCT--------THHHHHHHHHTTCCCBGGGGGSHHHHH
T ss_pred HHHHHHHHhc--cC--CCEEECCCCCCCChHHHHhhhhhhhhcCCCCcCCCCCChHHhhhhhccccCceeehhcCHHHHH
Confidence 9999999977 54 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC-CCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCcc
Q 011288 224 QKLDLLLSDAAARFPG-LKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFV 302 (489)
Q Consensus 224 ~kL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~V 302 (489)
+||+.++++++ ++.. ++.++.++++++++|.+++++|+|||+|+..+|++++++||+||||||||+|||+||||||||
T Consensus 159 ~kl~~~~~~~~-~l~~~~~~~~~~~e~~~~~~~~~~~~l~p~v~D~~~~l~~a~~~gk~iLfEGAQG~lLDid~GtYP~V 237 (419)
T 3r7t_A 159 EALIKDFEANK-TFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEGAQGSMLDIDHGTYPYV 237 (419)
T ss_dssp HHHHHHHHHTH-HHHHHTTCCCCCHHHHHHHHHHHHHHHGGGEECHHHHHHHHHHTTCCEEEECCSCGGGCTTTSSTTSS
T ss_pred HHHHHHHHHHH-HHHHhcCCCCCCHHHHHHHHHHHHHHhccccccHHHHHHHHHHcCCcEEEEecchhhhccccCcCCCc
Confidence 99999999999 6654 566678899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhccCCCCCCCCCCCccccchHHHHHHH
Q 011288 303 TSSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAGQEFGTTTGRPRRCGWLDVVALKYC 382 (489)
Q Consensus 303 TSSntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g~E~GttTGRpRR~GwlDlv~lrya 382 (489)
|||||+++|+|+|+|++|+.|++||||+|||+||||+||||||++++.|+.||+.|+|||+||||||||||||+|++|||
T Consensus 238 TSSnt~a~ga~~g~Gi~p~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~lr~~G~E~GttTGR~RRcGw~D~v~lrya 317 (419)
T 3r7t_A 238 TSSSTISAGTLTGLGLNPKEAGNIIGIVKAYATRVGNGAFPTEDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYT 317 (419)
T ss_dssp CSSCCSHHHHHHHHTCCGGGEEEEEEEEESSEEESSSSCCTTBCCSHHHHHHHHHTTCBCTTTCCBCEEECEEHHHHHHH
T ss_pred CCCCcchhhHhhccCCCchhcceEEEEEEeccccccCCCCCCcCCchhHHHHHhcCCCcCCcCCCCccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHH
Q 011288 383 CQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREF 462 (489)
Q Consensus 383 ~~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~y 462 (489)
+++||+|+||||||||||+|++||||++|++ +|+++++||+++ ++|+|||++|||| +|++++|+|++||+|||+|
T Consensus 318 ~~ing~t~lalTkLDvL~~~~~ikvcv~Y~~-~G~~~~~~P~~~---~~~~pvYe~~pGW-~~~~~~~~~~~LP~~a~~y 392 (419)
T 3r7t_A 318 ARLNGLDALSLMKLDVLDGFEKIKICRAYEY-KGMEIDYIPSDL---ENVQPIYEEMDGW-DKVFGIKDYDLLPENAKKY 392 (419)
T ss_dssp HHHHTCSEEEEECGGGGTTCSEEEEEEEEEE-TTEEESSCCSCG---GGEEEEEEEEECC-SCCTTCCCGGGSCHHHHHH
T ss_pred HHhcCCCeEEEecchhhcCCCceeEEEEEee-CCEEEeeCCCCc---cccEEEEEecCCc-hhccCCCChHHccHHHHHH
Confidence 9999999999999999999999999999999 999999999976 7999999999999 9999999999999999999
Q ss_pred HHHHHHHhCCCeEEEeeCCCccccccC
Q 011288 463 VERIEELVGVPINYIGVGPGRDALIYK 489 (489)
Q Consensus 463 i~~IE~~~gvpi~~isvGP~R~~~i~~ 489 (489)
|++||+++|+||+|||+||+|+|||.+
T Consensus 393 i~~iEe~~gvpv~~is~GP~R~~~I~~ 419 (419)
T 3r7t_A 393 IARLEELAGVKVKYISTSPERDDTIIL 419 (419)
T ss_dssp HHHHHHHHTSCEEEEECSSSTTCEEEC
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHeEeC
Confidence 999999999999999999999999964
No 7
>2d7u_A Adenylosuccinate synthetase; structural genomics, conserved hypothetical protein, NPPSFA; 2.50A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.3e-139 Score=1055.84 Aligned_cols=330 Identities=39% Similarity=0.691 Sum_probs=305.6
Q ss_pred ceEEEEcCCCccCCchhhHhhhccC--CCEEEecCCCCCCccEEEecCCeEEEEeecCceeecCCceeEecCCeEechHH
Q 011288 66 QVSGVLGSQWGDEGKGKLVDILAEH--FDIVARCQGGANAGHTIYNAEGKKFALHLVPSGILNEDTVCVIGNGVVVHLPG 143 (489)
Q Consensus 66 ~~~vVvG~qwGDEGKGKivD~La~~--~d~VVRfnGG~NAGHTVv~~~g~k~~lhliPSGil~~~~~~vIG~GvVvdp~~ 143 (489)
+.++|||+|||||||||||||||++ +|+|||||||+||||||+ ++|+||+|||||||+|+|+++|+||||||+||+.
T Consensus 2 ~~vvVvG~qwGDEGKGKivD~La~~~~~d~VvR~qGG~NAGHTVv-~~g~~~~lhllPSGi~~~~~~~vIGnGvVvdp~~ 80 (339)
T 2d7u_A 2 PSVIVVGGQWGDEGKGSIVAYLSLHDEPEIIARGGVGTNAGHSVV-INGKKYAVRQIPTGFMQTKARLLIGAGVLVDPEV 80 (339)
T ss_dssp CCEEEEESSSSCSSHHHHHHHHHHHTCCSEEEECSSSSSCCEEEE-ETTEEEEESSSCTTTTCSSSBEEECTTSCBCHHH
T ss_pred ceEEEEcCCcCCCCCceeEeeeccCCCCCEEEEcCccCCCCcEEE-ECCEEEEEEcCCccccCCCceEEECCcEEEcHHH
Confidence 3459999999999999999999999 999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCeEEeCCccccchhHHHhHHHHHHHhcCCCCCCCCCcchhhhccccccCCCeEeeCCCCCcHH
Q 011288 144 LFNEIDGLEANGVSCKGRILVSDRAHLLFDFHQEIDGLREAELAKSFIGTTRRGIGPAYSSKVIRNGIRVCDLRHMDTFP 223 (489)
Q Consensus 144 L~~Ei~~L~~~Gi~~~~rL~IS~rAhiv~p~H~~~D~~~E~~rg~~~iGTTgrGIGpay~dk~~R~giRv~DL~~~~~l~ 223 (489)
|++||+.|+++|++ +||+||+||||+||||+++|+++|.++ ++||||||||||||+||++|.|||++||
T Consensus 81 l~~Ei~~L~~~Gv~--~rL~Is~ra~li~p~H~~~D~~~E~~~--~~iGTTgrGIGPay~dK~~R~giRv~Dl------- 149 (339)
T 2d7u_A 81 FFHELEQLKDFNVK--DRVGIDYRCAIIEEKHKQLDRTNGYLH--GKIGTTGSGCGPANADRVMRKAKQAKDV------- 149 (339)
T ss_dssp HHHHHHHTGGGTGG--GTEEEETTCBBCCHHHHC------------------CCHHHHHHHHTTTCSCBGGGC-------
T ss_pred HHHHHHHHHHCCCC--CCEEECCCccCCChhHHHHhHHhHHhh--ccCCCCCCCchHHHHHHHhccCccHHHH-------
Confidence 99999999999976 899999999999999999999999987 7899999999999999999999999998
Q ss_pred HHHHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHhCCCccChHHHHHHHHHCCCcEEEEeccchhhcccCCCCCccc
Q 011288 224 QKLDLLLSDAAARFPGLKYTPDVLREEVEKYKRFAERLEPFITDTVHFMNESIAQKRKILVEGGQATMLDIDFGTYPFVT 303 (489)
Q Consensus 224 ~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~al~~gk~vLfEGAQG~LLDid~GtYP~VT 303 (489)
++|+||++|+..+|++|+++||+||||||||+|||+|||||||||
T Consensus 150 -----------------------------------~~l~p~v~D~~~~l~~a~~~gk~vLfEGaQG~lLDid~GtYP~VT 194 (339)
T 2d7u_A 150 -----------------------------------KELEPYLTDVAQEINDALDEGSLVLVEGTQGFGLSLYYGTYPYVT 194 (339)
T ss_dssp -----------------------------------SSSSTTEECHHHHHHHHHHTTCCEEEEEEEEGGGCTTTSSTTSSC
T ss_pred -----------------------------------HHHhccccCHHHHHHHHHHcCCeEEEEechHhhhhccCCcCCCcc
Confidence 478999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCcccCeEEEEEeecccccccCCCCCccCCCccchhhhcc-CCCCCCCCCCCccccchHHHHHHH
Q 011288 304 SSSPSAGGICTGLGIAPRVVGDLIGVVKAYTTRVGSGPFPTEIFGQGGDRLRLAG-QEFGTTTGRPRRCGWLDVVALKYC 382 (489)
Q Consensus 304 SSntta~g~~~g~Gi~p~~i~~viGV~KAY~TRVG~GPfPTEl~~~~g~~lr~~g-~E~GttTGRpRR~GwlDlv~lrya 382 (489)
||||+++++|+|+|++|+.|++||||+|||+||||+||||||++++.++. .| +|||+||||||||||||++++|||
T Consensus 195 SSnt~a~g~~~g~Gi~p~~i~~ViGV~KAYtTRVG~GPFPTEl~~e~g~~---~G~~E~GttTGR~RRcGw~D~v~~rya 271 (339)
T 2d7u_A 195 SKDVTASSVAADVGIGPTRVDEVIVVFKSFPTRVGAGPFPTEMPMEEADR---LGLVEYGTVTGRRRRVGWFDFEMARYS 271 (339)
T ss_dssp SSCCSHHHHHHHHTCCGGGCCEEEEEEESSCEECSSSCCTTBCCHHHHHH---TTCCCBCTTTCCBCEEBCCCHHHHHHH
T ss_pred CCCchhhhhhhccCCCccccCeEEEEEeeccceecCCCCCchhhhhhhhh---cCCCcccCcCCCCcccCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999888887 89 999999999999999999999999
Q ss_pred HHhcCcceEeeecccccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHH
Q 011288 383 CQINGLSSLNLTKLDVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREF 462 (489)
Q Consensus 383 ~~ing~~~lalTkLDvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~y 462 (489)
+++||+|+|+||||||||+ |+++|++|++||++||+|
T Consensus 272 ~~ing~t~lalTkLDvLd~-------------------------------------------~~~~~~~~~~LP~~a~~y 308 (339)
T 2d7u_A 272 ARINGATMLAVTMLDKYDK-------------------------------------------EAFGVTDYDKLPRKAKEF 308 (339)
T ss_dssp HHHTTCSEEEEECGGGTCG-------------------------------------------GGTTCCSGGGSCHHHHHH
T ss_pred HHhcCCCeEEEEcccccCC-------------------------------------------ccccceehHHCCHHHHHH
Confidence 9999999999999999974 788999999999999999
Q ss_pred HHHHHHHhCCCeEEEeeCCCcccccc
Q 011288 463 VERIEELVGVPINYIGVGPGRDALIY 488 (489)
Q Consensus 463 i~~IE~~~gvpi~~isvGP~R~~~i~ 488 (489)
|++||+++|+||+|||+||+|+|||.
T Consensus 309 i~~iEe~~gvpv~~is~GP~r~~ti~ 334 (339)
T 2d7u_A 309 IEEIEERVGVPVGLIKTGPELEHIID 334 (339)
T ss_dssp HHHHHHHHSSCEEEEECSSBSSCEEE
T ss_pred HHHHHHHHCCCEEEEEeCCChHHeEE
Confidence 99999999999999999999999875
No 8
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=31.05 E-value=12 Score=29.99 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=24.7
Q ss_pred CccCCchhhHhhhccCCCEEEecCCCCCCccE
Q 011288 75 WGDEGKGKLVDILAEHFDIVARCQGGANAGHT 106 (489)
Q Consensus 75 wGDEGKGKivD~La~~~d~VVRfnGG~NAGHT 106 (489)
|+|+|+---||-=...|.++|||.+++=+|++
T Consensus 18 y~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~ 49 (70)
T 1qp2_A 18 FQDVGTVASVDQSGIKYPVIVRFEKVNYSGIN 49 (70)
T ss_dssp TTCEEEEEEECCSSCSCSEEEECSSCCSSCCS
T ss_pred ecceeEEEEEeCCCcEeeEEEEeccccccccc
Confidence 57777776666644478999999998888885
No 9
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=23.99 E-value=1.7e+02 Score=22.94 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=30.5
Q ss_pred cccCCCCCcEEEeeeecCCCcccccCCcChhhhccCeEEEEEcCCcccccccccCCCCCcHHHHHHHHHHHHHhCCC
Q 011288 397 DVLSELPEIQLGVAYKQFDGTPVKSFPADLLLLEQLKVEYEVLPGWQSDISSVRNYSDLPKGAREFVERIEELVGVP 473 (489)
Q Consensus 397 DvL~~~~~IkIcv~Y~~~~G~~~~~~P~~~~~l~~~~pvY~~~~GW~~di~~~~~~~~LP~~a~~yi~~IE~~~gvp 473 (489)
|+++|=..+. +.| ||+.+.+-.+++ .+.++||+.||..+|..
T Consensus 16 ~L~tG~~~vs--V~y---dgr~V~Y~~asi------------------------------~~L~~~I~~le~~Lg~~ 57 (68)
T 1hyw_A 16 DLMTGKRVAT--VQK---DGRRVEFTATSV------------------------------SDLKKYIAELEVQTGMT 57 (68)
T ss_dssp HHTTSCCCEE--EEC---SSCEEEECTTTH------------------------------HHHHHHHHHHHHHTTTT
T ss_pred HHhcCCceEE--EEE---CCEEEEEecCCH------------------------------HHHHHHHHHHHHHhccc
Confidence 6677666654 456 687777666554 46789999999999883
No 10
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=21.71 E-value=42 Score=31.10 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=25.8
Q ss_pred CCCCC-CcchhhhccccccCCCeEeeCCCCCcHHHHHHHHH
Q 011288 191 IGTTR-RGIGPAYSSKVIRNGIRVCDLRHMDTFPQKLDLLL 230 (489)
Q Consensus 191 iGTTg-rGIGpay~dk~~R~giRv~DL~~~~~l~~kL~~~~ 230 (489)
.|.+| +|||.+.+....+.|-+|.=+...+...++++++.
T Consensus 13 TGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 53 (266)
T 3oig_A 13 MGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELA 53 (266)
T ss_dssp ECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH
T ss_pred EcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHH
Confidence 46666 89999999888888887653322233445555544
Done!