Query 011289
Match_columns 489
No_of_seqs 369 out of 2824
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 23:42:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02699 Bifunctional molybdop 100.0 1.2E-87 2.7E-92 734.8 55.1 485 1-489 174-659 (659)
2 COG0303 MoeA Molybdopterin bio 100.0 5.9E-54 1.3E-58 443.7 29.3 233 1-252 169-402 (404)
3 PRK10680 molybdopterin biosynt 100.0 2.4E-50 5.2E-55 420.6 30.9 237 1-254 170-407 (411)
4 PRK14497 putative molybdopteri 100.0 1.7E-49 3.6E-54 422.7 31.0 231 1-251 172-404 (546)
5 PRK14690 molybdopterin biosynt 100.0 7.1E-49 1.5E-53 410.1 30.6 230 1-252 186-415 (419)
6 cd00887 MoeA MoeA family. Memb 100.0 1.2E-48 2.5E-53 408.1 31.7 233 1-251 161-394 (394)
7 PRK14491 putative bifunctional 100.0 2.3E-47 5.1E-52 414.9 31.7 236 1-253 360-595 (597)
8 PRK14498 putative molybdopteri 100.0 1.8E-44 4E-49 398.2 32.0 236 1-255 179-414 (633)
9 TIGR00177 molyb_syn molybdenum 100.0 3.6E-33 7.8E-38 252.3 17.8 137 9-157 1-144 (144)
10 KOG2371 Molybdopterin biosynth 100.0 4.4E-33 9.6E-38 274.0 18.4 225 2-250 183-410 (411)
11 cd00758 MoCF_BD MoCF_BD: molyb 100.0 1.6E-31 3.4E-36 238.4 15.7 131 10-159 1-133 (133)
12 PRK09417 mogA molybdenum cofac 100.0 4.9E-31 1.1E-35 247.9 18.2 160 288-452 2-175 (193)
13 COG0521 MoaB Molybdopterin bio 100.0 1.3E-30 2.7E-35 236.8 16.1 156 287-448 5-162 (169)
14 TIGR02667 moaB_proteo molybden 100.0 4.1E-31 8.9E-36 243.4 12.1 140 6-165 2-155 (163)
15 COG1058 CinA Predicted nucleot 100.0 1.5E-30 3.3E-35 252.1 16.0 187 289-482 1-217 (255)
16 cd00886 MogA_MoaB MogA_MoaB fa 100.0 1.4E-30 2.9E-35 237.6 13.1 142 9-164 1-150 (152)
17 cd03522 MoeA_like MoeA_like. T 100.0 7.1E-30 1.5E-34 256.8 19.4 145 2-166 153-298 (312)
18 cd00886 MogA_MoaB MogA_MoaB fa 100.0 3.1E-29 6.7E-34 228.7 18.5 151 290-445 1-151 (152)
19 TIGR02667 moaB_proteo molybden 100.0 2.2E-29 4.8E-34 231.9 16.8 152 287-447 2-157 (163)
20 PRK03604 moaC bifunctional mol 100.0 5.7E-29 1.2E-33 249.4 19.6 156 288-449 154-309 (312)
21 PF00994 MoCF_biosynth: Probab 100.0 4.7E-30 1E-34 232.0 8.1 134 12-161 1-144 (144)
22 PRK01215 competence damage-ind 100.0 2.1E-28 4.7E-33 241.4 15.1 178 288-473 2-205 (264)
23 cd00887 MoeA MoeA family. Memb 100.0 1.3E-28 2.8E-33 257.3 12.0 172 233-444 134-313 (394)
24 COG0303 MoeA Molybdopterin bio 100.0 1.6E-28 3.4E-33 254.5 10.8 171 233-444 142-321 (404)
25 PF00994 MoCF_biosynth: Probab 100.0 2.7E-28 5.9E-33 220.4 11.1 140 293-441 1-144 (144)
26 PRK10680 molybdopterin biosynt 100.0 3.2E-28 6.9E-33 254.4 11.8 171 233-444 143-321 (411)
27 PRK14690 molybdopterin biosynt 99.9 4.8E-28 1E-32 253.5 12.5 169 234-443 160-336 (419)
28 PRK14497 putative molybdopteri 99.9 6E-28 1.3E-32 257.8 12.8 170 233-443 145-322 (546)
29 cd00758 MoCF_BD MoCF_BD: molyb 99.9 2.4E-27 5.3E-32 211.4 14.4 131 291-438 1-132 (133)
30 PRK03673 hypothetical protein; 99.9 7E-27 1.5E-31 242.0 15.2 174 289-469 1-201 (396)
31 TIGR00177 molyb_syn molybdenum 99.9 2E-26 4.3E-31 208.3 14.2 135 290-436 1-142 (144)
32 PRK14491 putative bifunctional 99.9 5.3E-27 1.1E-31 255.8 12.3 166 238-444 338-511 (597)
33 smart00852 MoCF_biosynth Proba 99.9 1.4E-26 3E-31 207.0 10.8 127 12-153 1-134 (135)
34 TIGR00200 cinA_nterm competenc 99.9 4.6E-26 1E-30 237.7 15.9 174 290-470 1-202 (413)
35 cd03522 MoeA_like MoeA_like. T 99.9 1.4E-25 3.1E-30 225.6 18.0 172 230-441 109-295 (312)
36 PRK03670 competence damage-ind 99.9 1.2E-25 2.7E-30 220.0 16.0 180 290-479 1-216 (252)
37 PRK14498 putative molybdopteri 99.9 3E-26 6.5E-31 253.5 12.7 170 234-444 153-330 (633)
38 cd00885 cinA Competence-damage 99.9 3.6E-25 7.8E-30 205.2 15.7 143 291-440 1-168 (170)
39 PRK00549 competence damage-ind 99.9 2.4E-25 5.1E-30 233.4 15.6 174 290-470 1-201 (414)
40 PRK03604 moaC bifunctional mol 99.9 5.9E-25 1.3E-29 220.5 17.2 138 8-164 153-304 (312)
41 PLN02699 Bifunctional molybdop 99.9 2.7E-25 5.9E-30 244.1 13.5 172 233-444 147-336 (659)
42 KOG2371 Molybdopterin biosynth 99.9 6.5E-25 1.4E-29 216.5 13.1 216 240-489 162-391 (411)
43 PRK01215 competence damage-ind 99.9 7.5E-24 1.6E-28 209.2 16.3 137 7-162 2-174 (264)
44 smart00852 MoCF_biosynth Proba 99.9 1.1E-23 2.5E-28 188.2 12.9 127 293-434 1-134 (135)
45 TIGR00200 cinA_nterm competenc 99.9 1.1E-21 2.3E-26 205.0 16.1 135 9-164 1-174 (413)
46 PRK09417 mogA molybdenum cofac 99.8 8.3E-21 1.8E-25 178.7 13.6 140 7-162 2-165 (193)
47 cd00885 cinA Competence-damage 99.8 3.2E-20 7E-25 172.1 15.0 139 10-161 1-169 (170)
48 PRK03673 hypothetical protein; 99.8 2.2E-19 4.7E-24 186.3 16.8 142 9-163 2-173 (396)
49 PRK00549 competence damage-ind 99.8 1.1E-18 2.3E-23 183.3 15.7 141 9-162 1-171 (414)
50 PRK03670 competence damage-ind 99.8 1.1E-17 2.4E-22 164.0 14.7 139 9-159 1-176 (252)
51 COG1058 CinA Predicted nucleot 99.7 2.5E-17 5.5E-22 160.1 15.3 141 9-162 2-172 (255)
52 COG0521 MoaB Molybdopterin bio 99.7 3.6E-17 7.9E-22 149.0 11.8 143 6-161 5-155 (169)
53 PF03454 MoeA_C: MoeA C-termin 99.4 3.6E-13 7.8E-18 107.0 6.9 72 174-251 1-72 (72)
54 KOG2644 3'-phosphoadenosine 5' 96.4 0.00045 9.7E-09 68.1 -1.8 86 290-382 5-90 (282)
55 COG2185 Sbm Methylmalonyl-CoA 87.9 1.7 3.6E-05 39.1 6.5 116 7-151 11-132 (143)
56 PRK02261 methylaspartate mutas 85.7 5.9 0.00013 35.4 9.0 77 7-101 2-78 (137)
57 PF04263 TPK_catalytic: Thiami 85.7 2.6 5.7E-05 36.9 6.5 65 34-101 44-108 (123)
58 cd02072 Glm_B12_BD B12 binding 84.3 4.7 0.0001 35.7 7.4 65 30-99 8-72 (128)
59 COG3340 PepE Peptidase E [Amin 84.1 3.8 8.3E-05 39.3 7.2 63 8-86 32-94 (224)
60 PRK08306 dipicolinate synthase 83.5 14 0.00029 37.5 11.5 113 37-163 163-290 (296)
61 TIGR02069 cyanophycinase cyano 83.2 3.3 7.2E-05 40.9 6.8 66 7-86 27-92 (250)
62 TIGR00640 acid_CoA_mut_C methy 82.9 4 8.6E-05 36.3 6.5 77 7-101 1-77 (132)
63 TIGR01501 MthylAspMutase methy 82.0 13 0.00028 33.2 9.4 65 31-100 11-75 (134)
64 cd03129 GAT1_Peptidase_E_like 81.3 5.4 0.00012 38.0 7.3 62 7-86 28-90 (210)
65 cd03146 GAT1_Peptidase_E Type 79.1 4.4 9.4E-05 38.9 5.9 59 7-85 30-89 (212)
66 cd01836 FeeA_FeeB_like SGNH_hy 77.6 51 0.0011 30.1 12.6 76 292-370 3-82 (191)
67 cd03145 GAT1_cyanophycinase Ty 74.3 8.5 0.00018 37.0 6.4 66 7-86 28-93 (217)
68 PF03575 Peptidase_S51: Peptid 73.3 4.5 9.7E-05 36.6 4.0 40 41-85 5-44 (154)
69 cd06353 PBP1_BmpA_Med_like Per 72.7 20 0.00043 35.3 8.8 57 41-101 23-79 (258)
70 cd01836 FeeA_FeeB_like SGNH_hy 72.4 13 0.00028 34.2 7.1 72 9-86 1-77 (191)
71 PRK05282 (alpha)-aspartyl dipe 71.7 11 0.00023 37.0 6.4 61 7-87 30-90 (233)
72 COG0698 RpiB Ribose 5-phosphat 70.1 11 0.00024 34.2 5.7 52 39-90 16-72 (151)
73 TIGR00566 trpG_papA glutamine 70.1 14 0.0003 34.6 6.7 47 34-87 8-54 (188)
74 TIGR01378 thi_PPkinase thiamin 69.8 9.7 0.00021 36.3 5.6 66 34-101 45-110 (203)
75 COG2185 Sbm Methylmalonyl-CoA 69.6 14 0.0003 33.3 6.1 78 287-380 10-87 (143)
76 PRK05670 anthranilate synthase 69.4 16 0.00034 34.2 6.9 57 35-98 9-66 (189)
77 cd02067 B12-binding B12 bindin 69.3 12 0.00026 32.0 5.7 66 31-101 9-74 (119)
78 PRK15454 ethanol dehydrogenase 68.8 14 0.00029 39.1 7.0 49 40-88 68-118 (395)
79 cd02070 corrinoid_protein_B12- 68.7 17 0.00036 34.5 7.0 76 8-101 82-157 (201)
80 TIGR02990 ectoine_eutA ectoine 67.7 18 0.00039 35.5 7.1 65 37-102 133-206 (239)
81 PF10087 DUF2325: Uncharacteri 67.5 13 0.00028 30.9 5.2 70 35-106 9-80 (97)
82 TIGR00689 rpiB_lacA_lacB sugar 67.2 14 0.00029 33.5 5.6 50 40-89 15-68 (144)
83 TIGR02133 RPI_actino ribose 5- 67.0 14 0.00031 33.5 5.8 52 39-90 16-72 (148)
84 TIGR00518 alaDH alanine dehydr 66.9 1.1E+02 0.0024 31.9 13.3 126 37-163 178-324 (370)
85 cd01822 Lysophospholipase_L1_l 66.1 31 0.00068 30.9 8.1 83 293-378 2-87 (177)
86 PRK12613 galactose-6-phosphate 66.0 16 0.00035 32.8 5.9 50 40-89 17-67 (141)
87 PF02502 LacAB_rpiB: Ribose/Ga 65.4 12 0.00026 33.6 5.0 51 39-89 15-69 (140)
88 cd03129 GAT1_Peptidase_E_like 65.0 18 0.00039 34.4 6.5 62 288-365 28-90 (210)
89 cd00578 L-fuc_L-ara-isomerases 64.8 18 0.0004 38.7 7.2 95 9-112 1-99 (452)
90 cd07995 TPK Thiamine pyrophosp 64.8 13 0.00029 35.4 5.5 66 34-101 49-114 (208)
91 PF00670 AdoHcyase_NAD: S-aden 64.7 12 0.00027 34.4 5.0 59 36-101 33-100 (162)
92 cd02071 MM_CoA_mut_B12_BD meth 64.3 18 0.00038 31.4 5.7 52 31-86 9-60 (122)
93 TIGR02069 cyanophycinase cyano 63.3 16 0.00034 36.1 5.8 66 288-365 27-92 (250)
94 PLN02335 anthranilate synthase 62.6 30 0.00066 33.4 7.6 46 35-87 28-73 (222)
95 TIGR00689 rpiB_lacA_lacB sugar 62.6 16 0.00035 33.0 5.2 113 308-439 6-122 (144)
96 PF04263 TPK_catalytic: Thiami 62.0 31 0.00067 30.2 6.8 65 308-381 45-109 (123)
97 cd04245 AAK_AKiii-YclM-BS AAK_ 61.0 29 0.00062 35.1 7.3 66 36-102 122-211 (288)
98 COG0512 PabA Anthranilate/para 60.7 23 0.00051 33.5 6.1 61 34-101 10-71 (191)
99 PRK08007 para-aminobenzoate sy 60.7 33 0.00071 32.1 7.2 49 34-89 8-56 (187)
100 TIGR01119 lacB galactose-6-pho 60.5 22 0.00047 33.1 5.8 50 40-89 17-70 (171)
101 TIGR01120 rpiB ribose 5-phosph 59.5 26 0.00057 31.6 6.0 50 40-89 16-69 (143)
102 PF10686 DUF2493: Protein of u 59.3 20 0.00044 28.2 4.7 43 60-102 15-57 (71)
103 PRK06774 para-aminobenzoate sy 59.2 36 0.00077 31.8 7.2 47 34-87 8-54 (191)
104 PRK07649 para-aminobenzoate/an 59.1 35 0.00076 32.2 7.2 47 34-87 8-54 (195)
105 TIGR00391 hydA hydrogenase (Ni 58.9 21 0.00046 37.2 6.0 127 306-438 68-207 (365)
106 PRK12613 galactose-6-phosphate 58.8 23 0.00049 31.9 5.5 113 308-439 8-121 (141)
107 PRK12615 galactose-6-phosphate 58.6 24 0.00052 32.8 5.7 50 40-89 17-70 (171)
108 TIGR02133 RPI_actino ribose 5- 58.5 22 0.00048 32.3 5.4 113 308-439 8-125 (148)
109 PRK08622 galactose-6-phosphate 58.1 26 0.00055 32.6 5.8 50 40-89 17-70 (171)
110 cd04501 SGNH_hydrolase_like_4 57.9 68 0.0015 29.1 8.9 81 294-379 3-83 (183)
111 PRK06895 putative anthranilate 57.7 20 0.00044 33.5 5.3 46 34-88 10-55 (190)
112 PRK13010 purU formyltetrahydro 57.7 25 0.00054 35.6 6.2 75 7-84 92-177 (289)
113 TIGR02853 spore_dpaA dipicolin 57.2 44 0.00095 33.7 7.9 74 37-115 162-245 (287)
114 TIGR01120 rpiB ribose 5-phosph 56.2 28 0.00061 31.4 5.6 108 308-434 7-118 (143)
115 PF02502 LacAB_rpiB: Ribose/Ga 56.2 18 0.00039 32.5 4.4 115 308-441 7-125 (140)
116 COG1731 Archaeal riboflavin sy 56.0 48 0.001 29.4 6.7 59 316-381 22-82 (154)
117 PF00117 GATase: Glutamine ami 56.0 14 0.0003 34.3 3.9 52 34-92 6-57 (192)
118 PRK09860 putative alcohol dehy 55.6 35 0.00076 35.8 7.2 49 40-88 50-100 (383)
119 COG0698 RpiB Ribose 5-phosphat 55.5 27 0.00059 31.8 5.4 52 313-369 17-72 (151)
120 cd06353 PBP1_BmpA_Med_like Per 55.4 37 0.00081 33.3 7.0 51 327-382 31-81 (258)
121 PRK05571 ribose-5-phosphate is 55.1 34 0.00073 31.1 6.0 97 40-153 17-120 (148)
122 PTZ00215 ribose 5-phosphate is 55.0 32 0.00069 31.4 5.8 50 40-89 19-74 (151)
123 PRK05637 anthranilate synthase 54.7 20 0.00044 34.2 4.8 47 34-88 10-56 (208)
124 cd02069 methionine_synthase_B1 54.6 29 0.00064 33.3 5.9 65 31-101 98-163 (213)
125 PTZ00215 ribose 5-phosphate is 54.0 32 0.00069 31.4 5.7 109 308-435 10-124 (151)
126 TIGR02638 lactal_redase lactal 53.9 33 0.00071 35.9 6.6 50 39-88 47-98 (379)
127 TIGR01119 lacB galactose-6-pho 53.8 31 0.00066 32.1 5.6 109 308-435 8-120 (171)
128 TIGR02370 pyl_corrinoid methyl 53.4 36 0.00079 32.2 6.3 66 31-101 94-159 (197)
129 COG4002 Predicted phosphotrans 53.0 49 0.0011 31.7 6.8 64 7-87 136-202 (256)
130 PRK08622 galactose-6-phosphate 52.9 31 0.00067 32.1 5.4 60 308-368 8-70 (171)
131 TIGR00566 trpG_papA glutamine 51.7 53 0.0011 30.7 7.1 61 307-380 8-69 (188)
132 PRK12615 galactose-6-phosphate 51.4 32 0.00069 32.0 5.3 60 308-368 8-70 (171)
133 COG1740 HyaA Ni,Fe-hydrogenase 51.1 32 0.00069 35.3 5.6 110 35-154 68-202 (355)
134 PRK10528 multifunctional acyl- 50.7 77 0.0017 29.4 8.0 81 293-379 12-95 (191)
135 PLN02714 thiamin pyrophosphoki 50.6 34 0.00074 33.3 5.7 66 34-101 62-133 (229)
136 PF00117 GATase: Glutamine ami 50.5 25 0.00054 32.6 4.7 68 307-386 6-74 (192)
137 cd01743 GATase1_Anthranilate_S 50.0 64 0.0014 29.8 7.3 66 308-386 8-73 (184)
138 PRK01372 ddl D-alanine--D-alan 49.9 85 0.0018 31.3 8.7 75 8-99 4-79 (304)
139 PRK05571 ribose-5-phosphate is 49.7 41 0.00089 30.5 5.6 113 308-439 8-125 (148)
140 PF03575 Peptidase_S51: Peptid 49.4 22 0.00049 32.0 4.0 40 314-364 5-44 (154)
141 TIGR00640 acid_CoA_mut_C methy 49.3 47 0.001 29.4 5.9 61 289-364 2-62 (132)
142 PF06506 PrpR_N: Propionate ca 49.3 1.1E+02 0.0024 28.2 8.7 77 8-115 77-153 (176)
143 cd01742 GATase1_GMP_Synthase T 49.1 34 0.00073 31.4 5.3 45 35-87 8-52 (181)
144 cd03145 GAT1_cyanophycinase Ty 49.0 35 0.00076 32.7 5.5 66 288-365 28-93 (217)
145 cd01835 SGNH_hydrolase_like_3 49.0 1.2E+02 0.0026 27.7 9.0 76 293-368 3-82 (193)
146 PF13507 GATase_5: CobB/CobQ-l 49.0 29 0.00063 34.5 5.0 68 8-98 1-68 (259)
147 COG3340 PepE Peptidase E [Amin 48.8 55 0.0012 31.6 6.5 74 288-382 31-104 (224)
148 TIGR01118 lacA galactose-6-pho 48.6 44 0.00096 30.1 5.6 50 40-89 17-68 (141)
149 PRK11366 puuD gamma-glutamyl-g 48.0 62 0.0013 31.9 7.2 67 7-88 6-74 (254)
150 PRK00758 GMP synthase subunit 47.9 73 0.0016 29.4 7.4 43 35-87 9-52 (184)
151 PRK10468 hydrogenase 2 small s 47.8 57 0.0012 34.1 7.0 126 308-439 68-206 (371)
152 PF02310 B12-binding: B12 bind 47.6 53 0.0012 27.7 5.9 47 35-85 14-60 (121)
153 PRK08621 galactose-6-phosphate 47.6 50 0.0011 29.8 5.8 50 40-89 17-68 (142)
154 PRK10624 L-1,2-propanediol oxi 47.4 34 0.00074 35.8 5.6 50 39-88 48-99 (382)
155 PF04392 ABC_sub_bind: ABC tra 47.2 36 0.00079 34.0 5.5 52 35-86 14-69 (294)
156 PF13407 Peripla_BP_4: Peripla 47.1 56 0.0012 31.2 6.7 69 37-106 16-85 (257)
157 COG2039 Pcp Pyrrolidone-carbox 47.1 1.2E+02 0.0025 28.9 8.2 81 294-379 3-83 (207)
158 PRK07765 para-aminobenzoate sy 47.1 92 0.002 29.8 8.1 67 309-386 11-78 (214)
159 cd01834 SGNH_hydrolase_like_2 46.3 51 0.0011 29.8 6.0 70 293-366 3-72 (191)
160 PRK09273 hypothetical protein; 46.1 37 0.0008 32.6 5.0 49 41-89 22-76 (211)
161 PRK08621 galactose-6-phosphate 46.0 47 0.001 29.9 5.4 114 308-439 8-122 (142)
162 TIGR00888 guaA_Nterm GMP synth 46.0 80 0.0017 29.3 7.3 66 307-386 7-72 (188)
163 PF04028 DUF374: Domain of unk 45.8 67 0.0014 25.6 5.7 49 36-85 20-68 (74)
164 PRK10468 hydrogenase 2 small s 45.8 35 0.00076 35.6 5.1 116 33-155 66-203 (371)
165 PRK14556 pyrH uridylate kinase 45.6 60 0.0013 32.1 6.5 71 289-367 54-147 (249)
166 PF02608 Bmp: Basic membrane p 45.2 38 0.00082 34.2 5.3 45 41-85 25-70 (306)
167 cd01821 Rhamnogalacturan_acety 45.2 76 0.0017 29.3 7.1 69 13-86 3-75 (198)
168 cd04244 AAK_AK-LysC-like AAK_A 45.1 1.2E+02 0.0025 30.8 8.8 71 36-107 128-228 (298)
169 TIGR00888 guaA_Nterm GMP synth 45.1 75 0.0016 29.5 7.0 46 35-88 8-53 (188)
170 cd01742 GATase1_GMP_Synthase T 44.8 51 0.0011 30.2 5.7 50 307-370 7-56 (181)
171 PRK01175 phosphoribosylformylg 44.5 52 0.0011 32.8 6.0 43 42-91 21-63 (261)
172 PF03720 UDPG_MGDP_dh_C: UDP-g 44.3 23 0.00051 29.8 3.1 54 30-84 11-74 (106)
173 KOG2644 3'-phosphoadenosine 5' 44.2 7.4 0.00016 38.9 -0.1 72 28-100 16-87 (282)
174 PRK08007 para-aminobenzoate sy 44.1 76 0.0016 29.6 6.8 60 307-379 8-68 (187)
175 TIGR00391 hydA hydrogenase (Ni 43.4 46 0.001 34.7 5.6 114 33-154 68-204 (365)
176 CHL00101 trpG anthranilate syn 43.1 76 0.0016 29.7 6.7 66 308-386 9-74 (190)
177 PRK03094 hypothetical protein; 42.6 41 0.00088 27.3 3.9 36 36-84 8-43 (80)
178 TIGR01118 lacA galactose-6-pho 42.4 59 0.0013 29.3 5.4 113 308-439 8-122 (141)
179 PRK13011 formyltetrahydrofolat 42.4 86 0.0019 31.6 7.3 79 7-85 88-174 (286)
180 cd06334 PBP1_ABC_ligand_bindin 42.3 83 0.0018 32.2 7.4 66 8-86 140-205 (351)
181 cd06346 PBP1_ABC_ligand_bindin 41.8 75 0.0016 31.7 6.9 64 9-85 138-201 (312)
182 PF00465 Fe-ADH: Iron-containi 41.6 40 0.00087 34.9 5.0 50 39-88 39-90 (366)
183 PRK08857 para-aminobenzoate sy 41.5 91 0.002 29.2 7.0 46 34-86 8-53 (193)
184 cd01542 PBP1_TreR_like Ligand- 41.4 1.5E+02 0.0032 28.1 8.7 65 40-108 20-85 (259)
185 cd00578 L-fuc_L-ara-isomerases 41.4 37 0.00081 36.4 4.8 87 290-384 1-90 (452)
186 cd08178 AAD_C C-terminal alcoh 41.0 46 0.00099 35.1 5.3 50 39-88 39-90 (398)
187 PRK05670 anthranilate synthase 40.9 74 0.0016 29.6 6.2 59 308-379 9-68 (189)
188 PF04028 DUF374: Domain of unk 40.4 89 0.0019 24.8 5.6 50 308-364 19-68 (74)
189 PF10727 Rossmann-like: Rossma 40.3 61 0.0013 28.5 5.2 69 7-101 9-88 (127)
190 TIGR01319 glmL_fam conserved h 40.0 1.1E+02 0.0024 33.0 7.9 67 30-100 78-144 (463)
191 COG1609 PurR Transcriptional r 40.0 1.3E+02 0.0029 30.6 8.5 65 40-108 79-144 (333)
192 cd01838 Isoamyl_acetate_hydrol 40.0 74 0.0016 28.9 6.1 73 294-369 2-77 (199)
193 cd04245 AAK_AKiii-YclM-BS AAK_ 40.0 54 0.0012 33.1 5.4 67 310-383 123-212 (288)
194 cd08182 HEPD Hydroxyethylphosp 39.9 67 0.0015 33.3 6.3 49 40-88 39-89 (367)
195 cd01822 Lysophospholipase_L1_l 39.9 1.1E+02 0.0023 27.4 7.0 70 12-86 2-74 (177)
196 PF03698 UPF0180: Uncharacteri 39.8 28 0.0006 28.2 2.6 36 37-85 9-44 (80)
197 cd01832 SGNH_hydrolase_like_1 39.7 1.7E+02 0.0037 26.3 8.4 83 294-380 2-93 (185)
198 cd08194 Fe-ADH6 Iron-containin 39.4 63 0.0014 33.7 6.0 49 40-88 42-92 (375)
199 PF00670 AdoHcyase_NAD: S-aden 39.4 72 0.0016 29.4 5.6 59 311-382 35-102 (162)
200 cd01745 GATase1_2 Subgroup of 39.3 58 0.0013 30.4 5.2 51 34-90 17-67 (189)
201 PF00731 AIRC: AIR carboxylase 39.3 1.5E+02 0.0032 27.0 7.6 66 41-111 19-86 (150)
202 PRK06774 para-aminobenzoate sy 39.1 93 0.002 29.0 6.6 59 307-378 8-67 (191)
203 COG0047 PurL Phosphoribosylfor 38.9 79 0.0017 30.8 6.0 57 8-91 2-58 (231)
204 cd08183 Fe-ADH2 Iron-containin 38.9 57 0.0012 34.0 5.6 49 40-88 38-87 (374)
205 cd08187 BDH Butanol dehydrogen 38.8 52 0.0011 34.4 5.3 50 39-88 47-98 (382)
206 cd06331 PBP1_AmiC_like Type I 38.4 98 0.0021 31.0 7.2 47 38-84 149-195 (333)
207 cd00861 ProRS_anticodon_short 38.1 49 0.0011 26.5 4.0 46 37-86 19-64 (94)
208 TIGR01857 FGAM-synthase phosph 37.6 71 0.0015 38.8 6.6 67 7-91 976-1046(1239)
209 PRK06027 purU formyltetrahydro 37.5 65 0.0014 32.5 5.6 70 7-84 88-173 (286)
210 cd08186 Fe-ADH8 Iron-containin 37.3 52 0.0011 34.4 5.0 49 40-88 46-96 (383)
211 cd01537 PBP1_Repressors_Sugar_ 37.3 1.9E+02 0.0041 26.9 8.6 70 37-109 17-87 (264)
212 PF03129 HGTP_anticodon: Antic 36.8 51 0.0011 26.6 3.9 56 11-84 2-60 (94)
213 cd06371 PBP1_sensory_GC_DEF_li 36.8 1.7E+02 0.0036 30.4 8.8 50 37-86 148-198 (382)
214 COG0129 IlvD Dihydroxyacid deh 36.7 1E+02 0.0023 34.0 7.2 101 6-117 40-162 (575)
215 COG1564 THI80 Thiamine pyropho 36.6 55 0.0012 31.5 4.6 64 34-100 51-114 (212)
216 PRK11914 diacylglycerol kinase 36.3 96 0.0021 31.2 6.7 55 40-101 30-84 (306)
217 TIGR01196 edd 6-phosphoglucona 35.8 1.1E+02 0.0024 34.0 7.3 101 3-115 59-184 (601)
218 cd08550 GlyDH-like Glycerol_de 35.6 70 0.0015 33.0 5.6 57 38-96 38-95 (349)
219 TIGR03609 S_layer_CsaB polysac 35.6 1.6E+02 0.0034 29.4 8.0 50 39-90 16-78 (298)
220 cd06167 LabA_like LabA_like pr 35.5 2.1E+02 0.0044 25.1 8.0 60 39-102 55-123 (149)
221 PRK06895 putative anthranilate 35.5 72 0.0016 29.8 5.2 45 308-367 11-55 (190)
222 PRK14558 pyrH uridylate kinase 35.4 1.8E+02 0.004 27.9 8.2 65 37-102 76-146 (231)
223 KOG0025 Zn2+-binding dehydroge 35.3 88 0.0019 31.8 5.8 43 38-83 174-216 (354)
224 cd08170 GlyDH Glycerol dehydro 35.3 84 0.0018 32.4 6.1 56 39-96 39-95 (351)
225 cd06338 PBP1_ABC_ligand_bindin 35.2 1.3E+02 0.0028 30.2 7.4 49 37-85 157-205 (345)
226 cd02065 B12-binding_like B12 b 35.1 97 0.0021 26.1 5.6 53 31-87 9-61 (125)
227 cd01830 XynE_like SGNH_hydrola 35.1 1.7E+02 0.0037 27.1 7.8 72 294-366 2-85 (204)
228 cd01743 GATase1_Anthranilate_S 35.1 1.3E+02 0.0028 27.7 6.8 51 35-92 8-58 (184)
229 PRK13193 pyrrolidone-carboxyla 35.0 1.6E+02 0.0035 28.3 7.5 79 294-377 3-81 (209)
230 PRK07649 para-aminobenzoate/an 35.0 1.2E+02 0.0027 28.5 6.7 60 307-379 8-68 (195)
231 PRK15454 ethanol dehydrogenase 35.0 1.1E+02 0.0024 32.2 7.1 50 312-367 67-118 (395)
232 PF02601 Exonuc_VII_L: Exonucl 34.9 1.5E+02 0.0033 29.9 7.9 87 289-386 14-109 (319)
233 cd06349 PBP1_ABC_ligand_bindin 34.4 1.2E+02 0.0025 30.5 7.0 48 38-85 152-199 (340)
234 cd08190 HOT Hydroxyacid-oxoaci 34.2 82 0.0018 33.4 5.9 50 39-88 41-92 (414)
235 PRK10780 periplasmic chaperone 34.1 60 0.0013 29.8 4.3 40 341-380 123-164 (165)
236 cd06328 PBP1_SBP_like_2 Peripl 33.7 1.3E+02 0.0028 30.4 7.1 46 39-84 154-199 (333)
237 cd08181 PPD-like 1,3-propanedi 33.7 66 0.0014 33.3 5.1 50 39-88 44-95 (357)
238 cd01832 SGNH_hydrolase_like_1 33.7 1.7E+02 0.0036 26.4 7.3 73 13-86 2-77 (185)
239 PF02608 Bmp: Basic membrane p 33.7 85 0.0018 31.7 5.8 37 326-363 33-69 (306)
240 cd01821 Rhamnogalacturan_acety 33.6 1.4E+02 0.003 27.6 6.8 71 294-370 3-80 (198)
241 cd08189 Fe-ADH5 Iron-containin 33.3 80 0.0017 32.9 5.7 49 40-88 45-95 (374)
242 COG1105 FruK Fructose-1-phosph 33.3 65 0.0014 32.9 4.7 50 36-86 62-139 (310)
243 PLN02335 anthranilate synthase 33.1 1.3E+02 0.0028 29.0 6.7 71 288-380 17-88 (222)
244 COG0528 PyrH Uridylate kinase 33.0 63 0.0014 31.6 4.4 70 37-108 83-160 (238)
245 PF14164 YqzH: YqzH-like prote 32.9 37 0.00081 26.2 2.2 39 39-77 8-46 (64)
246 cd00858 GlyRS_anticodon GlyRS 32.8 1E+02 0.0022 26.4 5.4 45 37-86 43-87 (121)
247 cd06345 PBP1_ABC_ligand_bindin 32.7 1.3E+02 0.0028 30.3 7.0 67 6-85 142-208 (344)
248 cd06267 PBP1_LacI_sugar_bindin 32.7 2E+02 0.0044 26.8 8.0 67 39-109 19-86 (264)
249 PRK09273 hypothetical protein; 32.2 90 0.002 30.0 5.2 51 313-368 21-76 (211)
250 cd06318 PBP1_ABC_sugar_binding 32.1 1.3E+02 0.0028 28.9 6.7 44 40-84 20-63 (282)
251 PRK15404 leucine ABC transport 32.1 1.3E+02 0.0029 30.9 7.1 48 37-84 177-224 (369)
252 cd08173 Gro1PDH Sn-glycerol-1- 32.0 85 0.0018 32.2 5.5 48 39-88 42-90 (339)
253 cd06356 PBP1_Amide_Urea_BP_lik 31.9 1.7E+02 0.0037 29.4 7.7 49 36-84 147-195 (334)
254 PRK07765 para-aminobenzoate sy 31.8 1E+02 0.0023 29.4 5.8 48 35-87 10-57 (214)
255 PF00763 THF_DHG_CYH: Tetrahyd 31.7 1.9E+02 0.0041 24.8 6.8 82 287-380 27-109 (117)
256 cd01541 PBP1_AraR Ligand-bindi 31.7 3.9E+02 0.0084 25.5 10.0 47 40-87 20-66 (273)
257 TIGR02990 ectoine_eutA ectoine 31.7 1.5E+02 0.0032 29.1 6.9 80 290-385 121-209 (239)
258 cd08185 Fe-ADH1 Iron-containin 31.5 1E+02 0.0022 32.2 6.1 50 39-88 44-95 (380)
259 cd08551 Fe-ADH iron-containing 31.4 82 0.0018 32.7 5.3 50 39-88 41-92 (370)
260 CHL00101 trpG anthranilate syn 31.4 1.3E+02 0.0028 28.0 6.3 48 34-88 8-55 (190)
261 cd08170 GlyDH Glycerol dehydro 31.4 93 0.002 32.0 5.7 65 293-368 25-90 (351)
262 PF02514 CobN-Mg_chel: CobN/Ma 31.3 2.4E+02 0.0051 34.1 9.6 92 7-111 70-168 (1098)
263 PF04392 ABC_sub_bind: ABC tra 31.2 80 0.0017 31.5 5.1 46 312-363 18-67 (294)
264 PRK02261 methylaspartate mutas 31.1 1.5E+02 0.0032 26.4 6.2 64 288-366 2-65 (137)
265 cd06282 PBP1_GntR_like_2 Ligan 31.1 2.5E+02 0.0054 26.5 8.4 65 40-107 20-85 (266)
266 cd04259 AAK_AK-DapDC AAK_AK-Da 31.1 1.8E+02 0.0038 29.5 7.5 66 37-102 122-218 (295)
267 COG2085 Predicted dinucleotide 30.9 1.7E+02 0.0036 28.3 6.8 87 9-119 2-98 (211)
268 cd06298 PBP1_CcpA_like Ligand- 30.8 2.4E+02 0.0052 26.7 8.3 45 40-85 20-64 (268)
269 PRK06131 dihydroxy-acid dehydr 30.8 1.2E+02 0.0026 33.7 6.5 98 6-115 35-151 (571)
270 cd06371 PBP1_sensory_GC_DEF_li 30.8 1.3E+02 0.0028 31.2 6.8 66 290-365 133-198 (382)
271 cd06366 PBP1_GABAb_receptor Li 30.6 2.5E+02 0.0054 28.2 8.7 67 7-86 134-202 (350)
272 cd01841 NnaC_like NnaC (CMP-Ne 30.5 1.9E+02 0.0041 25.8 7.0 74 294-380 3-76 (174)
273 PRK11544 hycI hydrogenase 3 ma 30.4 1.8E+02 0.0039 26.3 6.8 61 290-362 1-61 (156)
274 cd08179 NADPH_BDH NADPH-depend 30.2 99 0.0021 32.2 5.7 50 39-88 42-93 (375)
275 cd06358 PBP1_NHase Type I peri 30.2 1.3E+02 0.0029 30.1 6.6 48 39-86 150-197 (333)
276 TIGR00746 arcC carbamate kinas 30.1 1.7E+02 0.0037 29.9 7.2 49 67-116 173-243 (310)
277 PRK14571 D-alanyl-alanine synt 29.7 2.3E+02 0.0051 28.2 8.2 77 10-101 2-78 (299)
278 cd06305 PBP1_methylthioribose_ 29.7 1.3E+02 0.0029 28.7 6.3 66 40-107 20-86 (273)
279 PRK13566 anthranilate synthase 29.7 2.7E+02 0.0058 32.0 9.3 79 285-386 522-600 (720)
280 PF02826 2-Hacid_dh_C: D-isome 29.7 1E+02 0.0022 28.4 5.1 66 36-102 46-118 (178)
281 PRK06291 aspartate kinase; Pro 29.6 1.8E+02 0.004 31.3 7.8 66 36-102 132-225 (465)
282 PRK09054 phosphogluconate dehy 29.6 1.2E+02 0.0027 33.7 6.4 101 3-115 60-185 (603)
283 cd01828 sialate_O-acetylestera 29.5 67 0.0015 28.7 3.8 60 293-367 1-60 (169)
284 PRK14569 D-alanyl-alanine synt 29.3 2.1E+02 0.0045 28.7 7.7 113 7-168 2-114 (296)
285 PRK09330 cell division protein 29.3 65 0.0014 34.0 4.1 38 64-102 86-127 (384)
286 cd08171 GlyDH-like2 Glycerol d 29.1 1E+02 0.0023 31.7 5.6 58 38-97 38-97 (345)
287 COG1597 LCB5 Sphingosine kinas 29.1 1.2E+02 0.0025 30.8 5.8 61 34-101 18-78 (301)
288 TIGR00561 pntA NAD(P) transhyd 29.0 8.1E+02 0.018 27.0 13.3 124 33-163 192-338 (511)
289 PF02610 Arabinose_Isome: L-ar 29.0 63 0.0014 33.6 3.8 73 287-362 4-79 (359)
290 PRK05282 (alpha)-aspartyl dipe 29.0 1.2E+02 0.0026 29.7 5.6 61 288-366 30-90 (233)
291 PF03446 NAD_binding_2: NAD bi 29.0 1E+02 0.0023 27.8 5.0 58 38-100 13-77 (163)
292 PF04127 DFP: DNA / pantothena 28.9 1.8E+02 0.0039 27.3 6.7 55 37-96 31-98 (185)
293 cd06363 PBP1_Taste_receptor Li 28.9 1.9E+02 0.0041 30.2 7.7 49 38-86 193-244 (410)
294 cd06366 PBP1_GABAb_receptor Li 28.9 2.3E+02 0.0051 28.4 8.2 64 290-364 136-201 (350)
295 PF13433 Peripla_BP_5: Peripla 28.7 1.5E+02 0.0033 31.0 6.6 49 35-84 149-197 (363)
296 COG1052 LdhA Lactate dehydroge 28.6 2.4E+02 0.0052 29.0 8.1 65 36-102 156-227 (324)
297 PRK14556 pyrH uridylate kinase 28.6 1.1E+02 0.0023 30.3 5.3 64 37-102 94-164 (249)
298 cd08193 HVD 5-hydroxyvalerate 28.6 73 0.0016 33.2 4.4 50 39-88 44-95 (376)
299 cd04258 AAK_AKiii-LysC-EC AAK_ 28.5 1.5E+02 0.0032 30.1 6.4 64 37-100 124-212 (292)
300 PLN03139 formate dehydrogenase 28.4 2.2E+02 0.0047 30.1 7.9 59 36-102 62-120 (386)
301 PRK00843 egsA NAD(P)-dependent 28.3 74 0.0016 32.9 4.3 50 38-89 50-100 (350)
302 cd06289 PBP1_MalI_like Ligand- 28.2 2.8E+02 0.0061 26.2 8.2 45 40-85 20-64 (268)
303 PRK05665 amidotransferase; Pro 28.1 1.4E+02 0.003 29.2 6.0 66 289-368 2-71 (240)
304 cd08192 Fe-ADH7 Iron-containin 28.1 91 0.002 32.4 5.0 50 39-88 42-93 (370)
305 TIGR01319 glmL_fam conserved h 28.1 1.3E+02 0.0029 32.4 6.1 62 304-375 79-140 (463)
306 KOG1559 Gamma-glutamyl hydrola 28.0 3E+02 0.0064 27.3 7.9 88 287-385 50-139 (340)
307 cd01078 NAD_bind_H4MPT_DH NADP 28.0 1.3E+02 0.0028 28.0 5.5 16 72-88 94-109 (194)
308 PF06866 DUF1256: Protein of u 28.0 2.1E+02 0.0046 26.4 6.7 90 9-116 25-117 (163)
309 PRK02228 V-type ATP synthase s 27.9 90 0.002 26.2 4.0 34 327-363 19-52 (100)
310 PRK14817 NADH dehydrogenase su 27.8 1.6E+02 0.0035 27.7 6.0 78 75-165 74-162 (181)
311 PRK01175 phosphoribosylformylg 27.7 1.3E+02 0.0028 30.0 5.7 60 288-369 2-62 (261)
312 cd07766 DHQ_Fe-ADH Dehydroquin 27.7 95 0.0021 31.6 5.0 49 39-88 40-90 (332)
313 cd01839 SGNH_arylesterase_like 27.6 1.3E+02 0.0029 27.9 5.7 68 294-367 2-91 (208)
314 PF03358 FMN_red: NADPH-depend 27.6 2.3E+02 0.0051 24.8 7.0 80 290-383 1-95 (152)
315 cd06336 PBP1_ABC_ligand_bindin 27.5 1.5E+02 0.0033 29.9 6.5 65 8-85 138-202 (347)
316 TIGR01815 TrpE-clade3 anthrani 27.5 2.7E+02 0.0059 31.9 8.9 76 288-386 515-590 (717)
317 cd08188 Fe-ADH4 Iron-containin 27.4 77 0.0017 33.1 4.3 50 39-88 46-97 (377)
318 cd01844 SGNH_hydrolase_like_6 27.4 1.7E+02 0.0037 26.4 6.3 66 294-366 2-68 (177)
319 PF13472 Lipase_GDSL_2: GDSL-l 27.4 1.4E+02 0.0031 25.9 5.6 66 295-365 1-71 (179)
320 cd08191 HHD 6-hydroxyhexanoate 27.2 1.3E+02 0.0028 31.5 6.0 50 39-88 40-91 (386)
321 cd01538 PBP1_ABC_xylose_bindin 27.1 1.9E+02 0.0042 28.2 7.0 48 37-85 17-64 (288)
322 cd06322 PBP1_ABC_sugar_binding 26.8 2.1E+02 0.0045 27.2 7.0 48 37-85 17-64 (267)
323 cd04506 SGNH_hydrolase_YpmR_li 26.7 1.3E+02 0.0029 27.7 5.5 71 294-366 2-79 (204)
324 cd08176 LPO Lactadehyde:propan 26.7 1.3E+02 0.0029 31.3 5.9 50 39-88 46-97 (377)
325 cd08183 Fe-ADH2 Iron-containin 26.5 1.8E+02 0.004 30.2 6.9 51 312-368 37-88 (374)
326 cd06346 PBP1_ABC_ligand_bindin 26.5 1.4E+02 0.003 29.7 5.8 63 290-363 138-200 (312)
327 PRK13195 pyrrolidone-carboxyla 26.4 1.9E+02 0.0042 28.0 6.5 79 294-377 4-82 (222)
328 KOG3445 Mitochondrial/chloropl 26.4 72 0.0016 28.5 3.2 42 83-124 33-78 (145)
329 cd06302 PBP1_LsrB_Quorum_Sensi 26.4 1.5E+02 0.0033 29.1 6.2 46 39-84 19-64 (298)
330 cd06343 PBP1_ABC_ligand_bindin 26.4 1.8E+02 0.0039 29.5 6.8 48 38-85 161-208 (362)
331 TIGR01378 thi_PPkinase thiamin 26.3 1.4E+02 0.0031 28.2 5.6 66 308-381 46-111 (203)
332 TIGR01957 nuoB_fam NADH-quinon 26.3 95 0.002 28.1 4.1 69 75-154 56-135 (145)
333 PRK09423 gldA glycerol dehydro 26.3 1.4E+02 0.003 31.0 6.0 57 39-97 46-103 (366)
334 COG1731 Archaeal riboflavin sy 26.3 2.8E+02 0.0061 24.7 6.8 66 34-102 14-82 (154)
335 PRK05637 anthranilate synthase 26.1 1.1E+02 0.0023 29.3 4.7 51 307-371 10-60 (208)
336 PRK11199 tyrA bifunctional cho 26.1 4.6E+02 0.01 27.3 9.8 67 288-382 97-164 (374)
337 PRK14177 bifunctional 5,10-met 26.0 2.7E+02 0.0058 28.2 7.6 89 289-389 33-124 (284)
338 KOG1559 Gamma-glutamyl hydrola 26.0 3E+02 0.0066 27.2 7.6 72 7-93 51-127 (340)
339 PRK01372 ddl D-alanine--D-alan 25.9 3.7E+02 0.0079 26.6 8.8 82 288-385 3-85 (304)
340 TIGR01737 FGAM_synth_I phospho 25.9 1.8E+02 0.004 28.0 6.4 38 41-90 17-54 (227)
341 COG2069 CdhD CO dehydrogenase/ 25.7 1.5E+02 0.0032 30.1 5.6 67 31-100 146-219 (403)
342 PRK13197 pyrrolidone-carboxyla 25.6 2.5E+02 0.0055 27.0 7.2 80 294-378 4-83 (215)
343 PF01990 ATP-synt_F: ATP synth 25.5 62 0.0013 26.7 2.6 33 327-362 17-49 (95)
344 PLN02834 3-dehydroquinate synt 25.3 1.4E+02 0.003 32.0 5.8 56 38-95 116-180 (433)
345 cd00860 ThrRS_anticodon ThrRS 25.3 1.9E+02 0.0042 22.6 5.5 46 37-86 16-61 (91)
346 PRK09490 metH B12-dependent me 25.3 1.8E+02 0.0039 35.5 7.2 67 30-101 760-826 (1229)
347 PRK13196 pyrrolidone-carboxyla 25.3 2.3E+02 0.005 27.2 6.8 80 294-378 4-83 (211)
348 cd06281 PBP1_LacI_like_5 Ligan 25.2 4.4E+02 0.0095 25.1 9.0 47 39-86 19-65 (269)
349 PRK14814 NADH dehydrogenase su 25.2 1E+02 0.0023 29.0 4.2 76 75-163 72-158 (186)
350 PF10686 DUF2493: Protein of u 25.1 81 0.0018 24.8 3.0 34 338-372 15-48 (71)
351 cd06316 PBP1_ABC_sugar_binding 25.0 1.9E+02 0.0042 28.2 6.6 44 41-84 21-64 (294)
352 COG0206 FtsZ Cell division GTP 24.9 1.4E+02 0.0031 30.9 5.6 50 64-115 84-137 (338)
353 PF03446 NAD_binding_2: NAD bi 24.9 94 0.002 28.1 3.9 70 289-379 1-77 (163)
354 cd06355 PBP1_FmdD_like Peripla 24.9 1.8E+02 0.0039 29.5 6.5 46 39-84 151-196 (348)
355 PF02602 HEM4: Uroporphyrinoge 24.8 1.5E+02 0.0032 28.0 5.5 47 41-87 3-53 (231)
356 cd01741 GATase1_1 Subgroup of 24.8 2E+02 0.0043 26.5 6.2 44 311-368 13-59 (188)
357 PRK15138 aldehyde reductase; P 24.7 1.4E+02 0.0031 31.3 5.7 46 41-88 50-97 (387)
358 PRK09426 methylmalonyl-CoA mut 24.7 1.8E+02 0.004 33.3 6.9 62 7-85 581-642 (714)
359 cd06342 PBP1_ABC_LIVBP_like Ty 24.6 2.3E+02 0.0051 28.0 7.2 46 39-84 153-198 (334)
360 PF00448 SRP54: SRP54-type pro 24.6 1E+02 0.0022 29.1 4.2 59 291-361 31-89 (196)
361 PRK09065 glutamine amidotransf 24.6 1.9E+02 0.0041 28.1 6.2 68 290-371 2-70 (237)
362 PRK14816 NADH dehydrogenase su 24.5 1.1E+02 0.0024 28.8 4.2 78 75-162 80-166 (182)
363 cd01575 PBP1_GntR Ligand-bindi 24.5 3.2E+02 0.0069 25.8 7.9 46 39-85 19-64 (268)
364 PRK15408 autoinducer 2-binding 24.2 2.1E+02 0.0046 29.2 6.8 44 41-84 45-88 (336)
365 PRK06411 NADH dehydrogenase su 24.2 1.3E+02 0.0029 28.3 4.8 79 75-165 73-162 (183)
366 cd07103 ALDH_F5_SSADH_GabD Mit 24.2 43 0.00092 35.7 1.7 52 37-90 159-210 (451)
367 PRK13057 putative lipid kinase 24.1 1.9E+02 0.0041 28.8 6.3 57 37-101 14-70 (287)
368 cd08172 GlyDH-like1 Glycerol d 24.1 93 0.002 32.0 4.2 47 41-88 42-88 (347)
369 cd06334 PBP1_ABC_ligand_bindin 24.1 1.8E+02 0.0039 29.7 6.3 64 289-363 140-203 (351)
370 cd08194 Fe-ADH6 Iron-containin 24.0 2.5E+02 0.0054 29.2 7.4 51 312-368 41-93 (375)
371 TIGR02706 P_butyryltrans phosp 24.0 1.4E+02 0.0031 30.1 5.4 62 36-100 45-108 (294)
372 TIGR03884 sel_bind_Methan sele 24.0 3.3E+02 0.0071 21.8 6.1 35 326-360 10-47 (74)
373 TIGR02707 butyr_kinase butyrat 23.9 1.7E+02 0.0037 30.4 6.0 49 355-437 293-341 (351)
374 COG2910 Putative NADH-flavin r 23.9 6.5E+02 0.014 24.1 10.4 115 290-433 1-132 (211)
375 cd02067 B12-binding B12 bindin 23.9 3.5E+02 0.0075 22.7 7.1 66 39-107 40-108 (119)
376 cd01747 GATase1_Glutamyl_Hydro 23.8 2.9E+02 0.0063 27.5 7.5 47 316-374 27-74 (273)
377 PLN02551 aspartokinase 23.8 2.5E+02 0.0054 30.9 7.5 66 37-102 176-270 (521)
378 cd01424 MGS_CPS_II Methylglyox 23.8 1.3E+02 0.0028 25.2 4.4 40 314-362 35-74 (110)
379 COG2229 Predicted GTPase [Gene 23.8 1.1E+02 0.0024 28.9 4.1 59 79-148 12-83 (187)
380 PRK13017 dihydroxy-acid dehydr 23.5 2.7E+02 0.0058 31.2 7.6 97 7-115 46-160 (596)
381 cd06270 PBP1_GalS_like Ligand 23.5 4.3E+02 0.0094 25.0 8.6 44 40-84 20-63 (268)
382 COG1899 DYS1 Deoxyhypusine syn 23.4 1.1E+02 0.0024 31.1 4.3 38 65-108 70-108 (318)
383 TIGR03407 urea_ABC_UrtA urea A 23.3 2.1E+02 0.0046 29.1 6.7 46 39-84 152-197 (359)
384 cd08175 G1PDH Glycerol-1-phosp 23.3 1.5E+02 0.0033 30.4 5.6 51 37-88 38-92 (348)
385 PRK10646 ADP-binding protein; 23.2 62 0.0013 29.5 2.3 42 60-102 12-53 (153)
386 PF13685 Fe-ADH_2: Iron-contai 23.2 1.6E+02 0.0035 29.1 5.4 66 35-102 32-99 (250)
387 cd06259 YdcF-like YdcF-like. Y 23.1 1.1E+02 0.0023 27.1 3.8 40 63-102 21-64 (150)
388 PF08186 Wound_ind: Wound-indu 23.1 60 0.0013 23.1 1.6 18 33-50 2-19 (46)
389 TIGR01501 MthylAspMutase methy 23.0 1.7E+02 0.0036 26.1 5.0 52 305-366 12-63 (134)
390 PRK10481 hypothetical protein; 22.9 3.6E+02 0.0078 26.2 7.7 77 291-385 131-209 (224)
391 CHL00023 ndhK NADH dehydrogena 22.9 1.6E+02 0.0035 28.6 5.1 80 75-164 70-159 (225)
392 PRK12480 D-lactate dehydrogena 22.9 1.9E+02 0.004 29.8 6.0 49 37-86 157-208 (330)
393 COG1419 FlhF Flagellar GTP-bin 22.8 1E+02 0.0022 32.7 4.0 66 6-93 231-297 (407)
394 PRK04155 chaperone protein Hch 22.8 1E+02 0.0022 31.1 4.1 47 9-57 50-98 (287)
395 TIGR00639 PurN phosphoribosylg 22.7 1.3E+02 0.0028 28.4 4.5 10 9-18 1-10 (190)
396 PF02875 Mur_ligase_C: Mur lig 22.7 2.9E+02 0.0063 22.0 6.1 53 35-87 21-82 (91)
397 cd06379 PBP1_iGluR_NMDA_NR1 N- 22.7 3.4E+02 0.0074 27.8 8.1 49 37-85 170-222 (377)
398 COG0512 PabA Anthranilate/para 22.6 1.6E+02 0.0035 27.9 4.9 62 307-381 10-72 (191)
399 cd06348 PBP1_ABC_ligand_bindin 22.6 1.6E+02 0.0035 29.6 5.5 11 44-54 160-170 (344)
400 cd06301 PBP1_rhizopine_binding 22.5 2.1E+02 0.0046 27.2 6.2 46 40-86 20-66 (272)
401 COG2069 CdhD CO dehydrogenase/ 22.5 2.4E+02 0.0051 28.8 6.3 70 304-382 146-222 (403)
402 TIGR00379 cobB cobyrinic acid 22.4 5.9E+02 0.013 27.3 10.0 54 289-366 244-297 (449)
403 TIGR00337 PyrG CTP synthase. C 22.4 2E+02 0.0043 31.7 6.3 32 355-386 343-374 (525)
404 cd04234 AAK_AK AAK_AK: Amino A 22.4 1.6E+02 0.0035 28.3 5.2 66 36-102 60-150 (227)
405 PRK05647 purN phosphoribosylgl 22.4 97 0.0021 29.4 3.6 42 40-84 42-88 (200)
406 cd06328 PBP1_SBP_like_2 Peripl 22.3 1.9E+02 0.0042 29.0 6.1 63 290-363 137-199 (333)
407 PF01470 Peptidase_C15: Pyrogl 22.2 2.1E+02 0.0047 27.1 5.9 77 294-375 3-79 (202)
408 cd04502 SGNH_hydrolase_like_7 22.2 3E+02 0.0066 24.4 6.8 55 327-381 22-76 (171)
409 PF13407 Peripla_BP_4: Peripla 22.2 4.2E+02 0.009 25.0 8.2 60 316-385 22-81 (257)
410 cd03146 GAT1_Peptidase_E Type 22.2 1.5E+02 0.0032 28.3 4.8 60 288-364 30-89 (212)
411 PRK03094 hypothetical protein; 22.1 1.3E+02 0.0028 24.4 3.7 36 309-363 8-43 (80)
412 cd07995 TPK Thiamine pyrophosp 22.1 1.9E+02 0.0041 27.4 5.6 67 308-382 50-116 (208)
413 PF00456 Transketolase_N: Tran 22.1 2E+02 0.0044 29.6 6.1 60 303-368 187-249 (332)
414 COG0528 PyrH Uridylate kinase 22.0 1.8E+02 0.0038 28.6 5.2 82 290-381 45-148 (238)
415 cd02115 AAK Amino Acid Kinases 22.0 1.9E+02 0.004 27.8 5.6 70 36-106 76-170 (248)
416 cd06364 PBP1_CaSR Ligand-bindi 22.0 3.4E+02 0.0075 29.5 8.3 62 10-84 189-252 (510)
417 PRK13527 glutamine amidotransf 22.0 2.6E+02 0.0056 26.2 6.4 53 290-366 1-54 (200)
418 TIGR00162 conserved hypothetic 22.0 5.1E+02 0.011 24.3 8.3 30 340-369 32-61 (188)
419 PLN02347 GMP synthetase 21.9 3.5E+02 0.0075 29.9 8.2 45 35-87 20-64 (536)
420 cd06335 PBP1_ABC_ligand_bindin 21.9 3E+02 0.0066 27.7 7.5 48 38-85 155-202 (347)
421 PF13607 Succ_CoA_lig: Succiny 21.9 2.7E+02 0.0059 24.8 6.2 62 293-365 30-91 (138)
422 cd02191 FtsZ FtsZ is a GTPase 21.9 1.3E+02 0.0028 30.6 4.6 39 63-102 72-114 (303)
423 cd08549 G1PDH_related Glycerol 21.8 1.4E+02 0.003 30.6 4.9 52 37-89 39-93 (332)
424 CHL00188 hisH imidazole glycer 21.8 3.5E+02 0.0076 25.8 7.3 36 36-84 12-47 (210)
425 PF13271 DUF4062: Domain of un 21.8 2.2E+02 0.0049 22.6 5.2 50 39-89 16-65 (83)
426 cd06268 PBP1_ABC_transporter_L 21.8 2.9E+02 0.0063 26.2 7.0 48 38-85 152-199 (298)
427 PRK11780 isoprenoid biosynthes 21.8 1.3E+02 0.0028 29.0 4.3 40 9-57 2-41 (217)
428 cd07093 ALDH_F8_HMSADH Human a 21.7 48 0.001 35.4 1.5 53 36-90 158-210 (455)
429 cd07104 ALDH_BenzADH-like ALDH 21.7 50 0.0011 35.0 1.6 50 38-89 142-191 (431)
430 PF13941 MutL: MutL protein 21.7 1.9E+02 0.0042 31.2 6.0 68 31-102 83-150 (457)
431 COG0518 GuaA GMP synthase - Gl 21.6 2.7E+02 0.006 26.4 6.5 74 291-386 3-78 (198)
432 COG0240 GpsA Glycerol-3-phosph 21.6 1.4E+02 0.003 30.9 4.6 41 290-345 2-42 (329)
433 TIGR01205 D_ala_D_alaTIGR D-al 21.5 4.1E+02 0.0088 26.4 8.2 111 10-168 1-121 (315)
434 KOG0025 Zn2+-binding dehydroge 21.5 2E+02 0.0043 29.4 5.6 49 308-361 167-215 (354)
435 cd06309 PBP1_YtfQ_like Peripla 21.5 2.7E+02 0.0058 26.6 6.7 67 40-108 20-87 (273)
436 PRK06490 glutamine amidotransf 21.4 3E+02 0.0066 26.8 6.9 62 288-371 6-68 (239)
437 PRK10624 L-1,2-propanediol oxi 21.4 2.9E+02 0.0063 28.8 7.3 50 312-367 48-99 (382)
438 cd01827 sialate_O-acetylestera 21.3 2.1E+02 0.0045 25.9 5.6 71 293-367 2-79 (188)
439 cd02072 Glm_B12_BD B12 binding 21.3 1.8E+02 0.004 25.7 4.8 53 304-366 9-61 (128)
440 cd01744 GATase1_CPSase Small c 21.2 2.3E+02 0.0051 25.9 5.9 61 312-386 10-71 (178)
441 cd06273 PBP1_GntR_like_1 This 21.2 4.7E+02 0.01 24.7 8.3 46 39-85 19-64 (268)
442 cd01744 GATase1_CPSase Small c 21.2 2.5E+02 0.0054 25.7 6.1 41 39-87 10-50 (178)
443 PRK08857 para-aminobenzoate sy 21.1 3.1E+02 0.0068 25.5 6.8 60 307-379 8-68 (193)
444 COG0129 IlvD Dihydroxyacid deh 20.9 2.5E+02 0.0053 31.3 6.6 74 287-364 40-129 (575)
445 TIGR02710 CRISPR-associated pr 20.9 1.8E+02 0.0039 30.6 5.5 114 3-153 7-134 (380)
446 COG0595 mRNA degradation ribon 20.9 3.5E+02 0.0077 30.0 7.9 54 79-154 297-351 (555)
447 PRK06852 aldolase; Validated 20.9 3.2E+02 0.0069 27.9 7.1 56 40-98 192-251 (304)
448 PRK15469 ghrA bifunctional gly 20.9 1.5E+02 0.0033 30.2 4.9 50 36-86 146-200 (312)
449 cd01011 nicotinamidase Nicotin 20.8 3.4E+02 0.0074 25.3 7.0 61 39-101 127-188 (196)
450 cd01745 GATase1_2 Subgroup of 20.8 2.4E+02 0.0052 26.2 5.9 49 308-368 18-66 (189)
451 TIGR00114 lumazine-synth 6,7-d 20.8 1.8E+02 0.0039 26.1 4.7 76 43-123 24-105 (138)
452 PRK13054 lipid kinase; Reviewe 20.8 1.7E+02 0.0036 29.4 5.2 54 40-101 22-76 (300)
453 COG2121 Uncharacterized protei 20.7 2.3E+02 0.0049 27.3 5.5 50 36-86 78-127 (214)
454 cd08180 PDD 1,3-propanediol de 20.7 1.6E+02 0.0034 30.1 5.0 48 40-88 41-90 (332)
455 PRK11780 isoprenoid biosynthes 20.7 1.9E+02 0.0041 27.9 5.2 72 290-368 2-98 (217)
456 cd06363 PBP1_Taste_receptor Li 20.7 2.7E+02 0.0058 29.1 6.9 65 288-363 175-242 (410)
457 TIGR02841 spore_YyaC putative 20.6 2.1E+02 0.0046 25.7 5.0 75 35-116 16-93 (140)
458 TIGR00147 lipid kinase, YegS/R 20.6 2.4E+02 0.0052 28.0 6.2 54 40-101 23-77 (293)
459 PRK09436 thrA bifunctional asp 20.6 3.9E+02 0.0084 31.2 8.6 66 36-101 129-217 (819)
460 PRK02492 deoxyhypusine synthas 20.6 62 0.0013 33.6 1.9 27 341-367 72-98 (347)
461 cd07090 ALDH_F9_TMBADH NAD+-de 20.5 74 0.0016 34.1 2.7 52 36-90 157-208 (457)
462 cd02071 MM_CoA_mut_B12_BD meth 20.5 1.9E+02 0.0042 24.8 4.8 49 306-364 11-59 (122)
463 cd01833 XynB_like SGNH_hydrola 20.5 98 0.0021 27.2 3.1 63 293-379 2-64 (157)
464 PRK02301 putative deoxyhypusin 20.5 4.6E+02 0.0099 27.0 8.1 104 40-162 48-152 (316)
465 PF00710 Asparaginase: Asparag 20.5 1.2E+02 0.0025 31.0 3.9 74 10-86 1-82 (313)
466 COG1436 NtpG Archaeal/vacuolar 20.4 1.4E+02 0.003 25.5 3.7 32 327-362 21-53 (104)
467 PRK05613 O-acetylhomoserine am 20.4 1.6E+02 0.0035 31.5 5.2 56 15-82 106-161 (437)
468 COG2121 Uncharacterized protei 20.4 2.3E+02 0.0049 27.3 5.5 51 308-365 77-127 (214)
469 PF09198 T4-Gluco-transf: Bact 20.3 1.6E+02 0.0035 19.7 3.1 36 10-52 2-37 (38)
470 TIGR01505 tartro_sem_red 2-hyd 20.3 2E+02 0.0043 28.6 5.5 46 38-84 11-63 (291)
471 cd06379 PBP1_iGluR_NMDA_NR1 N- 20.3 3.2E+02 0.007 28.0 7.3 63 290-363 155-221 (377)
472 PRK13337 putative lipid kinase 20.2 1.8E+02 0.0039 29.2 5.3 54 40-101 23-77 (304)
473 cd01545 PBP1_SalR Ligand-bindi 20.2 5.5E+02 0.012 24.2 8.5 68 39-108 19-87 (270)
474 cd04501 SGNH_hydrolase_like_4 20.1 3.4E+02 0.0073 24.4 6.7 66 13-86 3-69 (183)
475 PRK13057 putative lipid kinase 20.1 2.6E+02 0.0057 27.7 6.4 59 311-383 15-73 (287)
476 cd06327 PBP1_SBP_like_1 Peripl 20.1 1.3E+02 0.0028 30.1 4.3 30 65-95 151-181 (334)
477 cd06314 PBP1_tmGBP Periplasmic 20.1 3.7E+02 0.0081 25.6 7.4 45 40-84 19-63 (271)
478 cd06318 PBP1_ABC_sugar_binding 20.0 4.1E+02 0.0088 25.4 7.7 41 316-363 23-63 (282)
No 1
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=100.00 E-value=1.2e-87 Score=734.77 Aligned_cols=485 Identities=79% Similarity=1.192 Sum_probs=441.1
Q ss_pred CeeeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEE
Q 011289 1 MMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDIL 80 (489)
Q Consensus 1 ~~V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlv 80 (489)
.+|+||+||||+||+|||||+++++.++.+|||+|+|+++|.++|+++|+++..+++++||+++|+++|++++++++|+|
T Consensus 174 ~~V~V~~kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~Dlv 253 (659)
T PLN02699 174 TMVKVYPRPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDIL 253 (659)
T ss_pred CeEEeecCCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEE
Confidence 47999999999999999999999975467999999999999999999999999999999999999999999875359999
Q ss_pred EEeCCCcCCCCCchHHHHHhcCCeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHHH
Q 011289 81 LTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAIR 160 (489)
Q Consensus 81 ittGG~s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~ 160 (489)
|||||+|+|++|+++++++++|+++||+++||||||+++|.+++++.++. .++++||+|||||.|++++|++|+.|+|+
T Consensus 254 ItTGGts~G~~D~v~~~l~~~G~i~f~gv~~kPGkp~~~a~~~~~~~~g~-~~~~~v~gLPGnP~sa~~~f~~~v~P~l~ 332 (659)
T PLN02699 254 LTSGGVSMGDRDFVKPLLEKRGTVYFSKVLMKPGKPLTFAEIDAKSAPSN-SKKMLAFGLPGNPVSCLVCFNLFVVPAIR 332 (659)
T ss_pred EECCCCCCCCCccHHHHHHhcCcceEEEEEecCCCceeeEEecccccccc-cCCEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999974221111 12479999999999999999999999999
Q ss_pred HhcCCCCCCCceEEEEEcCCCCCCCCCceEEEEEEEEeeCCCCCccceEEEecCCCCchhhhhhhcCCEEEEcCCCCccc
Q 011289 161 HLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLELPATGSVI 240 (489)
Q Consensus 161 ~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~g~~~~~~~~~p~~~~~s~~l~sl~~an~l~~ip~g~~~i 240 (489)
+|+|+.......+++++.+++.++.++++|+|+++....++|...+.+.+.|+++|+|+++++|++||||+++|++.+.+
T Consensus 333 ~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~r~~~~~~~~~g~~~~~~~~~~~~~~~S~~i~sl~~an~li~ip~~~~~~ 412 (659)
T PLN02699 333 YLAGWSNPHLLRVQARLREPIKLDPVRPEFHRAIIRWKLNDGSGNPGFVAESTGHQMSSRLLSMKSANALLELPATGNVL 412 (659)
T ss_pred HHcCCCCCCCccEEEEeCCcccCCCCCcEEEEEEEEEecCCCccccceEEEeCCCCCcHHHHHHHhCCEEEEECCCCCcc
Confidence 99998655555689999999999999999999988742124421222778899999999999999999999999999999
Q ss_pred cCCcEEEEEEecccccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEEEeCCcccCCCccCCchHHHHHHHHc
Q 011289 241 SAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNS 320 (489)
Q Consensus 241 ~~G~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~ 320 (489)
++|+.|++++|+.+.+.++++++.+++..+++-+.|+| +|++++. +++++||++|||+..|...|.+++.+.++|++
T Consensus 413 ~~G~~V~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~rvaIIt~sde~~~~~~~D~sg~~~~~il~~ 489 (659)
T PLN02699 413 SAGTSVSAIIISDISSKSLDESSTSSDPHSSRHGSTSK-SIEAQNP--EVKVAILTVSDTVSSGAGPDRSGPRAVSVVNS 489 (659)
T ss_pred CCCCEEEEEEecccccCCCCCCCccccccccccccccc-ccccccC--CcEEEEEEECCcccCCCcccccchHHHHHHHh
Confidence 99999999999999999999999999999999999999 8777764 48899999999999999999999999999998
Q ss_pred cccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccccccHHHHHHhcccccC
Q 011289 321 SSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVT 400 (489)
Q Consensus 321 ~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~ 400 (489)
++.++.|+++..+.+++||++.|+++|+++++.+++|+||||||+|.+++|+|++|+++++++.+||+.+.+++++++++
T Consensus 490 n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItTGGts~g~~D~tpeal~~l~~k~~PG~~~~~~~~~~~~~ 569 (659)
T PLN02699 490 SSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTLGGTGFTPRDVTPEATKEVIQKETPGLLYVMMQESLKVT 569 (659)
T ss_pred hhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCccCCCCcchHHHHHHHHhccCCcHHHHHHHhhhccc
Confidence 76655589999999999999999999999864347999999999999999999999999999999999999999999999
Q ss_pred CCccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcCCceeeeecCCCCCCccc-ccchhhhcccCCCC
Q 011289 401 PFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGDKREKHPRHVPHSQAVP-VDTWEHSYKMSSGG 479 (489)
Q Consensus 401 p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l~~~~~~~~~~~~~~~~~~~~es~l~~-~~~~~~~~~~~~~~ 479 (489)
|++++||+++|++++++||+|||+|.+++.+|+.|+|.|.|++.++.+...+.|..+.+..+... +++|+++|+..++.
T Consensus 570 Pg~~lSR~~~g~~~~~lv~~LPG~P~aa~~~~~~i~p~l~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (659)
T PLN02699 570 PFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIKGDKREKHPRHIPHAQATDPVDTWERSYKAASGQ 649 (659)
T ss_pred CCceeeeeEEEEECCEEEEECCCCHHHHHHHHHHHHHhHHHHHHHhcCCCcccCCCCCChhhccCchhhHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999988778888888777665 89999999999999
Q ss_pred CCCCCccCCC
Q 011289 480 GTEPSCSCSH 489 (489)
Q Consensus 480 ~~~~~~~~~~ 489 (489)
|-||-|||||
T Consensus 650 ~~~~~~~~~~ 659 (659)
T PLN02699 650 GGEPGCSCSH 659 (659)
T ss_pred CCCCCCCCCC
Confidence 9999999999
No 2
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=100.00 E-value=5.9e-54 Score=443.67 Aligned_cols=233 Identities=42% Similarity=0.665 Sum_probs=222.1
Q ss_pred CeeeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEE
Q 011289 1 MMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDIL 80 (489)
Q Consensus 1 ~~V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlv 80 (489)
.+|+|||||||+||||||||++|+++ +.+|||||+|+++|.++|+++|++++++++++||++++++++++++++ ||+|
T Consensus 169 ~~V~V~rkprV~IisTGdELv~~~~~-l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~-~Dvi 246 (404)
T COG0303 169 AEVKVYRKPRVAIISTGDELVEPGQP-LEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSE-ADVI 246 (404)
T ss_pred ceEEEecCCEEEEEecCccccCCCCC-CCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhc-CCEE
Confidence 47999999999999999999999987 999999999999999999999999999999999999999999999985 9999
Q ss_pred EEeCCCcCCCCCchHHHHH-hcCCeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHH
Q 011289 81 LTSGGVSMGDKDFVKPLLQ-KKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAI 159 (489)
Q Consensus 81 ittGG~s~G~~D~~~~~l~-~~G~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L 159 (489)
|||||+|+|++||++++++ ++|+++|||++||||||+.+|++++ ++||+|||||+||+++|+.||.|+|
T Consensus 247 ItsGG~SvG~~D~v~~~l~~~lG~v~~~gia~kPGkP~~~g~~~~----------~~v~gLPGnPvSalv~f~~~v~p~l 316 (404)
T COG0303 247 ITSGGVSVGDADYVKAALERELGEVLFHGVAMKPGKPTGLGRLGG----------KPVFGLPGNPVSALVNFELFVRPLL 316 (404)
T ss_pred EEeCCccCcchHhHHHHHHhcCCcEEEEeeeecCCCceEEEEECC----------cEEEECCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 5999999999999999999999983 6799999999999999999999999
Q ss_pred HHhcCCCCCCCceEEEEEcCCCCCCCCCceEEEEEEEEeeCCCCCccceEEEecCCCCchhhhhhhcCCEEEEcCCCCcc
Q 011289 160 RHLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLELPATGSV 239 (489)
Q Consensus 160 ~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~g~~~~~~~~~p~~~~~s~~l~sl~~an~l~~ip~g~~~ 239 (489)
++++|.+...+..++++|..+++++.+|++|+|+++.. ++|. +.++|+. ++||++++|++||||+++|++.+.
T Consensus 317 ~~~~g~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~~~~--~~g~----~~a~p~~-~~Sg~~~sl~~adg~i~ip~~~~~ 389 (404)
T COG0303 317 RKLLGLKATAPRKVKARLLADIPSKPGRREFLRVRLER--DNGR----LLAEPLG-QGSGLLSSLAEADGLIVIPEGVEG 389 (404)
T ss_pred HHhcCCccccCceEEEEecccccCCCCcceEEEEEEec--CCce----EEEEECC-CCCHHHHHHhhCceEEEeCCCCcc
Confidence 99999887667789999999999999999999999986 3566 8899998 899999999999999999999999
Q ss_pred ccCCcEEEEEEec
Q 011289 240 ISAGTLVSAIVIS 252 (489)
Q Consensus 240 i~~G~~V~v~ll~ 252 (489)
+++|+.|++++|.
T Consensus 390 ~~~Ge~V~v~~~~ 402 (404)
T COG0303 390 VEAGEEVEVLLLR 402 (404)
T ss_pred ccCCCEEEEEEec
Confidence 9999999999986
No 3
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=100.00 E-value=2.4e-50 Score=420.64 Aligned_cols=237 Identities=36% Similarity=0.555 Sum_probs=219.6
Q ss_pred CeeeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEE
Q 011289 1 MMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDIL 80 (489)
Q Consensus 1 ~~V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlv 80 (489)
++|+||++|||+||+|||||++++++ +.+|||+|+|+++|.++|+++|+++..+++++||+++|+++|+++.+ +||+|
T Consensus 170 ~~V~V~~~prV~iistGdEl~~~~~~-~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~-~~Dlv 247 (411)
T PRK10680 170 AEVPVVRKVRVALFSTGDELQLPGQP-LGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADS-QADVV 247 (411)
T ss_pred CeEEecCCCEEEEEccCCeEeCCCCC-CCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhcc-CCCEE
Confidence 47999999999999999999999997 88999999999999999999999999999999999999999999875 59999
Q ss_pred EEeCCCcCCCCCchHHHHHhcCCeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHHH
Q 011289 81 LTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAIR 160 (489)
Q Consensus 81 ittGG~s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~ 160 (489)
|||||+|+|++||++++++++|+++||+++||||||+++|.++ +++||+|||||.|++++|+.|+.|+|+
T Consensus 248 IttGG~S~G~~D~~~~al~~lG~~~f~~v~~kPGkp~~~g~~~----------~~~v~gLPGnP~sa~~~~~~~v~P~l~ 317 (411)
T PRK10680 248 ISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLS----------NSWFCGLPGNPVSAALTFYQLVQPLLA 317 (411)
T ss_pred EEcCCCCCCCcchHHHHHHhcCcEEEEEEEEecCcceEEEEEC----------CeEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 489999999999999999999999999
Q ss_pred HhcCCCCCCC-ceEEEEEcCCCCCCCCCceEEEEEEEEeeCCCCCccceEEEecCCCCchhhhhhhcCCEEEEcCCCCcc
Q 011289 161 HLSGWANPHL-LRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLELPATGSV 239 (489)
Q Consensus 161 ~l~G~~~~~~-~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~g~~~~~~~~~p~~~~~s~~l~sl~~an~l~~ip~g~~~ 239 (489)
+|+|...+.. ..+++.+..+++++.++++|+|+++... .+|. +.+.|+++++|+++++|++||||++||++.+.
T Consensus 318 ~l~g~~~~~~~~~~~a~l~~~~~~~~~~~~f~r~~l~~~-~~G~----~~~~~~~~~~s~~l~sl~~an~li~ip~~~~~ 392 (411)
T PRK10680 318 KLSGNTASGLPPRQRVRTASRLKKTPGRLDFQRGILQRN-ADGE----LEVTTTGHQGSHIFSSFSLGNCFIVLERERGN 392 (411)
T ss_pred HHcCCCCcCCCccEEEEeCCCccCCCCCcEEEEEEEEEc-CCCe----EEEEECCCCCCHHHHHHHhCCEEEEECCCCCc
Confidence 9999764322 2588999999999999999999998742 3565 77889999999999999999999999999999
Q ss_pred ccCCcEEEEEEeccc
Q 011289 240 ISAGTLVSAIVISDI 254 (489)
Q Consensus 240 i~~G~~V~v~ll~~l 254 (489)
+++|+.|++++|+.+
T Consensus 393 ~~~G~~V~v~~~~~~ 407 (411)
T PRK10680 393 VEVGEWVEVEPFNAL 407 (411)
T ss_pred cCCCCEEEEEEehHh
Confidence 999999999988643
No 4
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=100.00 E-value=1.7e-49 Score=422.72 Aligned_cols=231 Identities=30% Similarity=0.448 Sum_probs=215.4
Q ss_pred CeeeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEE
Q 011289 1 MMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDIL 80 (489)
Q Consensus 1 ~~V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlv 80 (489)
.+|+||+||||+||+|||||++|+++ +.+|||||+|+++|.++|+++|+++..+++++||+++|+++|+++++ +||+|
T Consensus 172 ~~V~V~~rprV~IisTGdELv~pg~~-l~~G~I~dsNs~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~-~~DlV 249 (546)
T PRK14497 172 SSVKVYEKPKIYLIATGDELVEPGNS-LSPGKIYESNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAIS-VADVL 249 (546)
T ss_pred CEEeeccCCEEEEEEcCCcccCCCCC-CCCCcEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhh-cCCEE
Confidence 47999999999999999999999987 89999999999999999999999999999999999999999999987 59999
Q ss_pred EEeCCCcCCCCCchHHHHHhcCCeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHHH
Q 011289 81 LTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAIR 160 (489)
Q Consensus 81 ittGG~s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~ 160 (489)
|||||+|+|++|+++++++++|+++|||++||||||+++|.++ +++||+|||||.||+++|+.||.|+|+
T Consensus 250 IttGGtS~G~~D~~~~al~~lG~v~f~GV~ikPGKP~~~g~~~----------gkpV~gLPG~P~Sa~v~f~~fV~P~L~ 319 (546)
T PRK14497 250 ILTGGTSAGEKDFVHQAIRELGNIIVHGLKIKPGKPTILGIVD----------GKPVIGLPGNIVSTMVVLNMVILEYLK 319 (546)
T ss_pred EEcCCccCCCCccHHHHHhhcCcEEEcceeecCCCcEEEEEEC----------CEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 499999999999999999999999999
Q ss_pred HhcCCCC--CCCceEEEEEcCCCCCCCCCceEEEEEEEEeeCCCCCccceEEEecCCCCchhhhhhhcCCEEEEcCCCCc
Q 011289 161 HLSGWAN--PHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLELPATGS 238 (489)
Q Consensus 161 ~l~G~~~--~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~g~~~~~~~~~p~~~~~s~~l~sl~~an~l~~ip~g~~ 238 (489)
+|+|... +..+.++|++..+++++.++++|+++++.. .+|. +.+.|+. ++|+++++|++||||+++|++.+
T Consensus 320 ~l~G~~~~~~~~~~v~a~l~~~i~s~~gr~~fv~v~l~~--~~g~----~~a~Pl~-~gSg~issL~~AdG~i~ip~~~~ 392 (546)
T PRK14497 320 SLYPSRKEILGLGKIKARLALRVKADEHRNTLIPVYLFK--SDNS----YYALPVP-FDSYMVGTFSLTDGYIMLGPNEE 392 (546)
T ss_pred HhcCCCcccCCCceEEEEeCCccCCCCCceEEEEEEEEe--cCCE----EEEEecC-CCcHHHHHHHhCCEEEEECCCCC
Confidence 9999432 234468999999999999999999999875 3565 7889997 58999999999999999999985
Q ss_pred cccCCcEEEEEEe
Q 011289 239 VISAGTLVSAIVI 251 (489)
Q Consensus 239 ~i~~G~~V~v~ll 251 (489)
+++|+.|++++|
T Consensus 393 -~~~Ge~V~V~l~ 404 (546)
T PRK14497 393 -IEEGKEVEVDLK 404 (546)
T ss_pred -cCCCCEEEEEEE
Confidence 999999999977
No 5
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=100.00 E-value=7.1e-49 Score=410.14 Aligned_cols=230 Identities=38% Similarity=0.534 Sum_probs=213.7
Q ss_pred CeeeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEE
Q 011289 1 MMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDIL 80 (489)
Q Consensus 1 ~~V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlv 80 (489)
.+|+||++|||+||+|||||++++++ +..|||+|+|+++|.++|+++|+++..+++++||+++|+++|+++++ ++|+|
T Consensus 186 ~~V~V~~~prV~IisTGdEl~~~g~~-~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~-~~DlI 263 (419)
T PRK14690 186 TRVSVRRPLRVAVLSTGDELVEPGAL-AEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAA-EADVI 263 (419)
T ss_pred CeeEeecCCEEEEEEccccccCCCCC-CCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCc-cCCEE
Confidence 47999999999999999999999987 88999999999999999999999999999999999999999999986 59999
Q ss_pred EEeCCCcCCCCCchHHHHHhcCCeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHHH
Q 011289 81 LTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAIR 160 (489)
Q Consensus 81 ittGG~s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~ 160 (489)
|||||+|+|++|+++++++++|+++||+++||||||+++|.++ +++||+|||||+||+++|++||.|+|+
T Consensus 264 ItTGG~S~G~~D~v~~~l~~~G~~~~~~v~mkPGkp~~~~~~~----------~~pv~gLPGnP~aa~~~~~~~v~P~l~ 333 (419)
T PRK14690 264 LTSGGASAGDEDHVSALLREAGAMQSWRIALKPGRPLALGLWQ----------GVPVFGLPGNPVAALVCTLVFARPAMS 333 (419)
T ss_pred EEcCCccCCCcchHHHHHHhcCCEEEcceeecCCCceEEEEEC----------CeEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 489999999999999999999999999
Q ss_pred HhcCCCCCCCceEEEEEcCCCCCCCCCceEEEEEEEEeeCCCCCccceEEEecCCCCchhhhhhhcCCEEEEcCCCCccc
Q 011289 161 HLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLELPATGSVI 240 (489)
Q Consensus 161 ~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~g~~~~~~~~~p~~~~~s~~l~sl~~an~l~~ip~g~~~i 240 (489)
+|+|.....++.+++.+..+++++.++++|+|+++. +|. +.++.+++|+++++|++||||+++|++.+.+
T Consensus 334 ~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~r~~l~----~g~------~~~~~~~~s~~l~~l~~an~li~ip~~~~~~ 403 (419)
T PRK14690 334 LLAGEGWSEPQGFTVPAAFEKRKKPGRREYLRARLR----QGH------AEVFRSEGSGRISGLSWAEGLVELGDGARRI 403 (419)
T ss_pred HhcCCCCCCCccEEEEeCCCccCCCCCcEEEEEEEE----CCE------EEECCCCCCHHHHHHHhCCEEEEECCCCCcc
Confidence 999975433345889999999999999999999884 342 3467788999999999999999999999999
Q ss_pred cCCcEEEEEEec
Q 011289 241 SAGTLVSAIVIS 252 (489)
Q Consensus 241 ~~G~~V~v~ll~ 252 (489)
++|+.|++++++
T Consensus 404 ~~G~~V~v~~~~ 415 (419)
T PRK14690 404 APGDPVRFIPYG 415 (419)
T ss_pred CCCCEEEEEEec
Confidence 999999999874
No 6
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=100.00 E-value=1.2e-48 Score=408.08 Aligned_cols=233 Identities=44% Similarity=0.712 Sum_probs=219.7
Q ss_pred CeeeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEE
Q 011289 1 MMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDIL 80 (489)
Q Consensus 1 ~~V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlv 80 (489)
.+|+||++|||+||+|||||++++++ +.+||++|+|+++|.++|+++|+++..+++++||+++|+++|++++++ +|+|
T Consensus 161 ~~v~V~~~~rv~ii~tGdEl~~~g~~-~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~-~Dli 238 (394)
T cd00887 161 AEVPVYRRPRVAIISTGDELVEPGEP-LAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEE-ADVV 238 (394)
T ss_pred CEEEEecCCEEEEEeCCCcccCCCCC-CCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhC-CCEE
Confidence 47999999999999999999999987 899999999999999999999999999999999999999999999874 9999
Q ss_pred EEeCCCcCCCCCchHHHHHhcC-CeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHH
Q 011289 81 LTSGGVSMGDKDFVKPLLQKKG-TIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAI 159 (489)
Q Consensus 81 ittGG~s~G~~D~~~~~l~~~G-~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L 159 (489)
|||||+|+|++|+++++++++| +++||+++||||+|+++|.++ +++||+|||||.|++++|+.|+.|+|
T Consensus 239 ittGG~s~g~~D~~~~al~~~g~~~~f~gv~~kPG~p~~~g~~~----------~~~v~~LPG~P~sa~~~~~~~v~p~l 308 (394)
T cd00887 239 ITSGGVSVGDYDFVKEVLEELGGEVLFHGVAMKPGKPLAFGRLG----------GKPVFGLPGNPVSALVTFELFVRPAL 308 (394)
T ss_pred EEeCCCCCCcchhHHHHHHhCCCeEEEEEEEEecCCCEEEEEEC----------CEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 999999999999999999997 49999999999999999999999999
Q ss_pred HHhcCCCCCCCceEEEEEcCCCCCCCCCceEEEEEEEEeeCCCCCccceEEEecCCCCchhhhhhhcCCEEEEcCCCCcc
Q 011289 160 RHLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLELPATGSV 239 (489)
Q Consensus 160 ~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~g~~~~~~~~~p~~~~~s~~l~sl~~an~l~~ip~g~~~ 239 (489)
++++|...+..+.+++.+.++++++.++++|+|+++.. .+|. +.+.|+..++|+++++|++||||+++|++.+.
T Consensus 309 ~~l~g~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~--~~g~----~~~~~~~~~~s~~l~~l~~a~g~~~ip~~~~~ 382 (394)
T cd00887 309 RKLQGAPEPEPPRVKARLAEDLKSKPGRREFLRVRLER--DEGG----LVVAPPGGQGSGLLSSLARADGLIVIPEGVEG 382 (394)
T ss_pred HHHcCCCCCCCccEEEEeCCCcCCCCCCcEEEEEEEEe--cCCe----EEEEECCCCCcHHHHHHhhCCEEEEECCCCCc
Confidence 99999765556679999999999999999999999976 3465 77889999999999999999999999999999
Q ss_pred ccCCcEEEEEEe
Q 011289 240 ISAGTLVSAIVI 251 (489)
Q Consensus 240 i~~G~~V~v~ll 251 (489)
+++|+.|++++|
T Consensus 383 ~~~G~~v~v~~~ 394 (394)
T cd00887 383 LEAGEEVEVLLL 394 (394)
T ss_pred cCCCCEEEEEEC
Confidence 999999999875
No 7
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=100.00 E-value=2.3e-47 Score=414.95 Aligned_cols=236 Identities=41% Similarity=0.648 Sum_probs=220.4
Q ss_pred CeeeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEE
Q 011289 1 MMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDIL 80 (489)
Q Consensus 1 ~~V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlv 80 (489)
++|+||++|||+||+|||||++++++ +.+|||||+|+++|.++|+++|+++..+++++||+++|+++|+++++ ++|+|
T Consensus 360 ~~V~V~~~prV~IistGdEl~~~g~~-~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~-~~DlI 437 (597)
T PRK14491 360 AEVPVFRRPKVAVFSTGDEVQAPGET-LKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAA-QADVV 437 (597)
T ss_pred CeEEeccCCEEEEEecCCeeccCCCc-CCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhh-cCCEE
Confidence 47999999999999999999999987 88999999999999999999999999999999999999999999987 59999
Q ss_pred EEeCCCcCCCCCchHHHHHhcCCeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHHH
Q 011289 81 LTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAIR 160 (489)
Q Consensus 81 ittGG~s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~ 160 (489)
|||||+|+|++|+++++++++|+++||+++||||+|+++|.++ +++||+|||||.|++++|+.|+.|+|+
T Consensus 438 IttGG~s~G~~D~~~~al~~lG~i~f~~v~~kPGkp~~~g~~~----------~~~v~~LPGnP~aa~~~~~~~v~P~l~ 507 (597)
T PRK14491 438 ISSGGVSVGDADYIKTALAKLGQIDFWRINMRPGRPLAFGQIG----------DSPFFGLPGNPVAVMVSFLQFVEPALR 507 (597)
T ss_pred EEcCCccCCCcccHHHHHHhcCcEEEEEEEeecCCcEEEEEEC----------CEEEEEccCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 499999999999999999999999999
Q ss_pred HhcCCCCCCCceEEEEEcCCCCCCCCCceEEEEEEEEeeCCCCCccceEEEecCCCCchhhhhhhcCCEEEEcCCCCccc
Q 011289 161 HLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLELPATGSVI 240 (489)
Q Consensus 161 ~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~g~~~~~~~~~p~~~~~s~~l~sl~~an~l~~ip~g~~~i 240 (489)
+|+|.....++.+++.+..+++++.++++|+|+++... .+|. +.+.|+.+++|+++++|++||||+++|++.+.+
T Consensus 508 ~l~g~~~~~~~~~~a~l~~~~~~~~~r~~f~r~~l~~~-~~g~----~~~~~~~~~~s~~l~~l~~an~li~ip~~~~~~ 582 (597)
T PRK14491 508 KLAGEQNWQPLLFPAIADETLRSRQGRTEFSRGIYHLG-ADGR----LHVRTTGKQGSGILSSMSEANCLIEIGPAAETV 582 (597)
T ss_pred HHcCCCCCCCceEEEEeCCccCCCCCCcEEEEEEEEEc-CCCe----EEEEeCCCCCcHHHHHHHhCCEEEEECCCCCcc
Confidence 99997654445689999999999999999999988752 3565 677888889999999999999999999999999
Q ss_pred cCCcEEEEEEecc
Q 011289 241 SAGTLVSAIVISD 253 (489)
Q Consensus 241 ~~G~~V~v~ll~~ 253 (489)
++|+.|++++|..
T Consensus 583 ~~G~~V~v~~~~~ 595 (597)
T PRK14491 583 NAGETVTIQPLAG 595 (597)
T ss_pred CCCCEEEEEEecC
Confidence 9999999998853
No 8
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=100.00 E-value=1.8e-44 Score=398.24 Aligned_cols=236 Identities=34% Similarity=0.538 Sum_probs=220.9
Q ss_pred CeeeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEE
Q 011289 1 MMVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDIL 80 (489)
Q Consensus 1 ~~V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlv 80 (489)
.+|+||++|||+||+|||||++++++ +.+|+|+|+|+++|.++|+++|+++..+++++||+++|+++|+++++ ++|+|
T Consensus 179 ~~v~v~~~prv~vi~tG~El~~~~~~-~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~-~~D~i 256 (633)
T PRK14498 179 AEVPVYKKPRVGIISTGDELVEPGEP-LKPGKIYDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALK-ECDLV 256 (633)
T ss_pred CEEEEecCcEEEEEecCccccCCCCC-CCCCEEEEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh-cCCEE
Confidence 47999999999999999999999987 88999999999999999999999999999999999999999999987 59999
Q ss_pred EEeCCCcCCCCCchHHHHHhcCCeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHHH
Q 011289 81 LTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAIR 160 (489)
Q Consensus 81 ittGG~s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~ 160 (489)
|||||+|+|++|+++++++++|+++||+++|+||+|+++|.++ +++||+|||||.|++++|++|+.|+|+
T Consensus 257 IttGG~s~g~~D~~~~~l~~~g~~~~~~v~~~PG~~~~~g~~~----------~~~v~~LPG~p~aa~~~~~~~v~P~l~ 326 (633)
T PRK14498 257 LLSGGTSAGAGDVTYRVIEELGEVLVHGVAIKPGKPTILGVIG----------GKPVVGLPGYPVSALTIFEEFVAPLLR 326 (633)
T ss_pred EECCCCcCCCcccHHHHHHhcCCEEEeeEeecCCCCEEEEEEC----------CEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 489999999999999999999999999
Q ss_pred HhcCCCCCCCceEEEEEcCCCCCCCCCceEEEEEEEEeeCCCCCccceEEEecCCCCchhhhhhhcCCEEEEcCCCCccc
Q 011289 161 HLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLELPATGSVI 240 (489)
Q Consensus 161 ~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~g~~~~~~~~~p~~~~~s~~l~sl~~an~l~~ip~g~~~i 240 (489)
+++|...+..+.+++.+.++++++.++++|+|+++.+ ++|. +.+.|+. ++|+++++++.||||+++|++.+.+
T Consensus 327 ~l~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~g~----~~~~~~~-~~s~~~~~l~~an~~~~~~~~~~~~ 399 (633)
T PRK14498 327 KLAGLPPPERATVKARLARRVRSELGREEFVPVSLGR--VGDG----YVAYPLS-RGSGAITSLVRADGFIEIPANTEGL 399 (633)
T ss_pred HhcCCCCCCCccEEEEeCCccCCCCCccEEEEEEEEe--eCCe----EEEEECC-CCCHHHHHHHhCCEEEEECCCCccc
Confidence 9999876555568999999999999999999999976 3565 7788887 6899999999999999999999999
Q ss_pred cCCcEEEEEEecccc
Q 011289 241 SAGTLVSAIVISDIS 255 (489)
Q Consensus 241 ~~G~~V~v~ll~~l~ 255 (489)
++|+.|++++|....
T Consensus 400 ~~G~~v~~~~~~~~~ 414 (633)
T PRK14498 400 EAGEEVEVELFGPLV 414 (633)
T ss_pred CCCCeEEEEEecCcc
Confidence 999999999987655
No 9
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=100.00 E-value=3.6e-33 Score=252.29 Aligned_cols=137 Identities=42% Similarity=0.676 Sum_probs=131.8
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
|||+||+|||||++++++ +..|+++|+|+++|+++|+++|+++..+.+++||+++|.++|+++++ ++|+||||||+|+
T Consensus 1 prv~ii~tGdEl~~~~~~-~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~-~~DliIttGG~g~ 78 (144)
T TIGR00177 1 PRVAVISTGDELVEPGQP-LEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVD-EADVVLTTGGTGV 78 (144)
T ss_pred CEEEEEEcCcccccCCCC-CCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHh-CCCEEEECCCCCC
Confidence 799999999999999987 88999999999999999999999999999999999999999999987 5999999999999
Q ss_pred CCCCchHHHHHhcCCeEEeee-------eecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHH
Q 011289 89 GDKDFVKPLLQKKGTIYFNKV-------CMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVP 157 (489)
Q Consensus 89 G~~D~~~~~l~~~G~~~f~~v-------~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P 157 (489)
|++|+++++++++|+.+|+++ .+|||+|+.++.++ +++||+|||||.|+..+|+.|+.|
T Consensus 79 g~~D~t~~ai~~~g~~~~~gv~~~~~~~~~~PG~~~~~~~~~----------~~~v~~LPG~P~aa~~~~~~~v~p 144 (144)
T TIGR00177 79 GPRDVTPEALEELGEKEIPGFGEYFTAVLSRPGKPATAGVRG----------GTLIFGLPGNPVSALVTFEVLVLP 144 (144)
T ss_pred CCCccHHHHHHHhCcEEEeeeccccchhhCCCCCceEEEEEC----------CEEEEECCCCHHHHHHHHHHHccC
Confidence 999999999999999999999 99999999999886 499999999999999999999876
No 10
>KOG2371 consensus Molybdopterin biosynthesis protein [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.4e-33 Score=274.02 Aligned_cols=225 Identities=41% Similarity=0.582 Sum_probs=193.5
Q ss_pred eeeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEE
Q 011289 2 MVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILL 81 (489)
Q Consensus 2 ~V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlvi 81 (489)
++++|++|+|+|++||+|+..|.+ ..+|.++|+|+.+|.+++++.|+.+++.++++||.+.|+++|.++.+. +|+||
T Consensus 183 ~v~iykkpvVtV~sTgSel~~~d~--~~pg~v~~~n~s~l~~l~~~~Gf~~i~~gvv~D~~~~i~e~L~e~~~~-aDvIl 259 (411)
T KOG2371|consen 183 QVEIYKKPVVTVSSTGSELNSPDR--SGPGMVRDSNRSQLLELFQEHGFTAIDAGVVPDDVTRIKEKLREASSF-ADVIL 259 (411)
T ss_pred ccceecccEEEEeeccccccCccc--cCCceeeecchHHHHHHHHHhCccccccccccCcHHHHHHHHHHhhhh-ccEEE
Confidence 689999999999999999999854 789999999999999999999999999999999999999999999985 99999
Q ss_pred EeCCCcCCCCCchHHHHHhcC-CeEEeeeeecCCCcee-eEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHH
Q 011289 82 TSGGVSMGDKDFVKPLLQKKG-TIYFNKVCMKPGKPLT-FAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAI 159 (489)
Q Consensus 82 ttGG~s~G~~D~~~~~l~~~G-~~~f~~v~~kPGkp~~-~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L 159 (489)
||||+|+|++|+++++++.++ ++.|..|.|+||.|+. ||.++... .++.+++|+|||||++|++++++|+.|+|
T Consensus 260 TtGGvsm~~~D~~~~a~~~l~f~i~~g~V~mkpgl~~TsfA~l~~~g----ir~~k~i~~lPGnpvsAvv~c~lf~~PaL 335 (411)
T KOG2371|consen 260 TTGGVSMGPRDVTKEALKVLEFEIHLGRVDMKPGLPITSFATLSRAG----IRGPKLIFNLPGNPVSAVVECNLFLLPAL 335 (411)
T ss_pred ecCCccccchhhhhhHhhhhheeeecceeeccCCCcccceeeeeccc----cccceEEEECCCCcchhhhhhHHHHHHHH
Confidence 999999999999999999888 8999999999999999 99886310 12359999999999999999999999999
Q ss_pred HHhcCCCCCCCceEEEEEcCCCCCCCCCceEEEEEEEEeeCCCCCccceEEEecCCCCchhhhhhhcCCEEEEcCCCC-c
Q 011289 160 RHLSGWANPHLLRVPARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLELPATG-S 238 (489)
Q Consensus 160 ~~l~G~~~~~~~~~~a~l~~~~~~~~~~~~f~~~~l~~~~~~g~~~~~~~~~p~~~~~s~~l~sl~~an~l~~ip~g~-~ 238 (489)
++|.|+.... +-..|.+|.|+..... +.. |..++...++|-|+.+.++..|++++.+|+.. .
T Consensus 336 r~m~g~~~~~-------------~ld~r~e~~r~i~~~~-~~l---~~~~a~s~gNqiss~l~~~~~a~~l~~L~~ks~~ 398 (411)
T KOG2371|consen 336 RHMEGQLKET-------------SLDDRPEHVRAISHET-EFL---PARWAQSTGNQISSRLGSEVGAGVLLILPAKSNT 398 (411)
T ss_pred HHHhcccccc-------------ccCcchhhcccccccc-ccC---Ccchhhhccccccccccchhhccceeeccccccc
Confidence 9999976431 3344677888777322 121 11356667888899999999999999998865 4
Q ss_pred cccCCcEEEEEE
Q 011289 239 VISAGTLVSAIV 250 (489)
Q Consensus 239 ~i~~G~~V~v~l 250 (489)
.+.+|+.|....
T Consensus 399 ~~~~g~vv~~~v 410 (411)
T KOG2371|consen 399 CFSAGEVVDARV 410 (411)
T ss_pred ccccCCeeeeee
Confidence 568999988754
No 11
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=99.97 E-value=1.6e-31 Score=238.41 Aligned_cols=131 Identities=33% Similarity=0.574 Sum_probs=125.0
Q ss_pred eEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Q 011289 10 TIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMG 89 (489)
Q Consensus 10 rV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G 89 (489)
||+||+||||++ .|+++|+|+++|+++|+++|+++....+++||+++|++++++++++ +|+||||||+|+|
T Consensus 1 ~v~ii~~G~El~--------~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~g~g 71 (133)
T cd00758 1 RVAIVTVSDELS--------QGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASRE-ADLVLTTGGTGVG 71 (133)
T ss_pred CEEEEEeCcccc--------CCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhc-CCEEEECCCCCCC
Confidence 689999999998 5899999999999999999999999999999999999999999985 9999999999999
Q ss_pred CCCchHHHHHhcCCeEEe--eeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHH
Q 011289 90 DKDFVKPLLQKKGTIYFN--KVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAI 159 (489)
Q Consensus 90 ~~D~~~~~l~~~G~~~f~--~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L 159 (489)
++|+++++++++|+..|+ +++|+||+|.++|..+ ++++|+|||||.|+..+|+.|+.|+|
T Consensus 72 ~~D~t~~ai~~~g~~~~~g~~~~~~pg~~~~~~~~~----------~~~i~~LPG~p~a~~~~~~~~v~p~l 133 (133)
T cd00758 72 RRDVTPEALAELGEREAHGKGVALAPGSRTAFGIIG----------KVLIINLPGSPKSALTTFEALVLPAL 133 (133)
T ss_pred CCcchHHHHHHhcCEEeccCcccccCCCceEEEEEC----------CEEEEECCCCHHHHHHHHHHhheecC
Confidence 999999999999988888 9999999999999987 49999999999999999999999864
No 12
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=99.97 E-value=4.9e-31 Score=247.86 Aligned_cols=160 Identities=37% Similarity=0.544 Sum_probs=147.9
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEE--EEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCC
Q 011289 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKV--VATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGT 365 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v--~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~ 365 (489)
++++++||++||++..|++.|+|+++++++|+++ |++. ..+.++|||.++|+++|+++++.+++|+||||||+
T Consensus 2 ~~~~~aIItvSd~~~~G~i~D~ng~~L~~~L~~~-----G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGt 76 (193)
T PRK09417 2 DTLKIGLVSISDRASSGVYEDKGIPALEEWLASA-----LTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGT 76 (193)
T ss_pred CCcEEEEEEEcCcCCCCceeechHHHHHHHHHHc-----CCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 4589999999999999999999999999999998 6542 34599999999999999999853479999999999
Q ss_pred CCCCCCChHHHHHHhhccccccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHH------------
Q 011289 366 GFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECME------------ 433 (489)
Q Consensus 366 G~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~------------ 433 (489)
|++++|+|++|+++++++++|||.|+|+..+++..|.+++||+.+|+.++++||+|||+|.+++.+|+
T Consensus 77 g~g~rDvTpeAv~~l~~keipG~~e~~r~~s~~~~~~a~LSRa~agv~~~tlI~nLPGSp~a~~~~le~i~~~~~~~~~~ 156 (193)
T PRK09417 77 GPARRDVTPEATLAVADKEMPGFGEQMRQISLKFVPTAILSRQVAVIRGQSLIINLPGQPKSIKETLEGLKDADGNVVVP 156 (193)
T ss_pred CCCCCCcHHHHHHHHhCCcCCcHHHHHHHHhcccccHHHhhcceeEEeCCEEEEECCCCHHHHHHHHHhccccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCcee
Q 011289 434 ALLPALKHALKQIKGDKRE 452 (489)
Q Consensus 434 ~ilp~l~~~~~~~~~~~~~ 452 (489)
.++|.|.|++..+.+.+..
T Consensus 157 ~i~~~~~h~~~~~~~~~~~ 175 (193)
T PRK09417 157 GIFAAVPYCIDLIGGPYIE 175 (193)
T ss_pred HHHHHHHHHHHHhcCCccc
Confidence 8899999999998886543
No 13
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=99.97 E-value=1.3e-30 Score=236.81 Aligned_cols=156 Identities=43% Similarity=0.713 Sum_probs=146.0
Q ss_pred CcceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 287 YTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 287 ~~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
+..++++||+++|..+.|...|..|+.+.++|++. |+++..+.+||||.+.|++++..+++.. +|+||||||||
T Consensus 5 ~~~~~~~VvTVSd~r~~~~~~D~sG~~l~~~L~~a-----g~~~~~~~iV~D~~~~I~~~l~~~~~~~-~DvvlttGGTG 78 (169)
T COG0521 5 PKPLRIAVVTVSDRRSTGEYEDKSGPLLVELLEEA-----GHNVAAYTIVPDDKEQIRATLIALIDED-VDVVLTTGGTG 78 (169)
T ss_pred ccceeEEEEEEecccccCCccccchhHHHHHHHHc-----CCccceEEEeCCCHHHHHHHHHHHhcCC-CCEEEEcCCcc
Confidence 55689999999999999999999999999999999 9999999999999999999999999833 99999999999
Q ss_pred CCCCCChHHHHHHhhccccccHHHHHHhccccc-CCCccccccceeEECCEEEEEcCCCHHHHHHHHH-HHHHHHHHHHh
Q 011289 367 FTPRDVTPEATKELIERETPGLLYVMMQESLKV-TPFAMLSRSAAGIRGSTLIINMPGNPNAVAECME-ALLPALKHALK 444 (489)
Q Consensus 367 ~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~-~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~-~ilp~l~~~~~ 444 (489)
++++|+|+||+.+++++++|||.|.||..+++. .+.+.+||+.+|+.++++||+|||+|.+++.+|+ .++|.+.+...
T Consensus 79 ~t~RDvTpEA~~~~~dKeipGFgE~fR~~S~~~~g~~AiLSRa~aGv~~~tlIf~LPGSp~Avr~~l~~iI~p~l~~~~~ 158 (169)
T COG0521 79 ITPRDVTPEATRPLFDKEIPGFGELFRRLSLEEIGPTAILSRAVAGVRNGTLIFNLPGSPGAVRDALEGIILPELDYCID 158 (169)
T ss_pred CCCCcCCHHHHHHHHhccCCcHHHHHHHhhhhcCCCcEEEeeeeeEEeCCeEEEEcCCChhhHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999 9999999999999999999999999999999998 67898886555
Q ss_pred hhcC
Q 011289 445 QIKG 448 (489)
Q Consensus 445 ~~~~ 448 (489)
.+..
T Consensus 159 ~~~~ 162 (169)
T COG0521 159 LLHG 162 (169)
T ss_pred cccc
Confidence 4443
No 14
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=99.97 E-value=4.1e-31 Score=243.36 Aligned_cols=140 Identities=19% Similarity=0.331 Sum_probs=129.2
Q ss_pred eeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHh-cCCCEEEEeC
Q 011289 6 YRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS-AGIDILLTSG 84 (489)
Q Consensus 6 ~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~-~~~DlvittG 84 (489)
|+++||+||+||||+. +++|+|+++|+++|+++|+++..+++++||++.|+++|+++++ +++|+|||||
T Consensus 2 ~~~~rv~vit~~d~~~----------~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttG 71 (163)
T TIGR02667 2 FIPLRIAILTVSDTRT----------EEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITG 71 (163)
T ss_pred CCccEEEEEEEeCcCC----------ccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 5789999999999974 3689999999999999999999999999999999999999864 3599999999
Q ss_pred CCcCCCCCchHHHHHhc------C-CeEEeeeeecC-CCcee-----eEEEccCCCCccccccEEEEEcCCChHHHHHHH
Q 011289 85 GVSMGDKDFVKPLLQKK------G-TIYFNKVCMKP-GKPLT-----FAEINIKPTDDVMVNKILAFGLPGNPVSCIVCF 151 (489)
Q Consensus 85 G~s~G~~D~~~~~l~~~------G-~~~f~~v~~kP-Gkp~~-----~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~ 151 (489)
|+|+|++|+++++++++ | +.+||+++||| |+|++ +|..+ +++||+|||||.|++.+|
T Consensus 72 Gtg~g~~D~t~eal~~l~~~~l~G~~~~~~~i~~~p~G~~~~lsr~~~g~~~----------~~~v~~LPG~P~aa~~~~ 141 (163)
T TIGR02667 72 GTGFTGRDVTPEALEPLFDKTVEGFGELFRQLSYEEIGTSTIQSRALAGLAN----------GTFVFCLPGSTGACRTAW 141 (163)
T ss_pred CcCCCCCCCcHHHHHHHHCCcCCcHHHHHHHHhhcccCHHHHHhhhhheeeC----------CeEEEECCCCHHHHHHHH
Confidence 99999999999999999 8 78999999999 99975 78776 489999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 011289 152 HLYIVPAIRHLSGW 165 (489)
Q Consensus 152 ~~~v~P~L~~l~G~ 165 (489)
+.|+.|+|++..+.
T Consensus 142 ~~~v~P~l~~~~~~ 155 (163)
T TIGR02667 142 DKIIAAQLDARHRP 155 (163)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999997653
No 15
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=252.07 Aligned_cols=187 Identities=24% Similarity=0.277 Sum_probs=149.5
Q ss_pred ceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011289 289 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
+++++||+||||++.|++.|+|+.|+++.|.+. |+.+.+..+|+||+++|.++|+.+++ ++|+||+|||+|||
T Consensus 1 ~~~a~iI~vG~ElL~G~ivdtNa~~la~~L~~~-----G~~v~~~~~VgD~~~~I~~~l~~a~~--r~D~vI~tGGLGPT 73 (255)
T COG1058 1 MMKAEIIAVGDELLSGRIVDTNAAFLADELTEL-----GVDLARITTVGDNPDRIVEALREASE--RADVVITTGGLGPT 73 (255)
T ss_pred CceEEEEEEccceecCceecchHHHHHHHHHhc-----CceEEEEEecCCCHHHHHHHHHHHHh--CCCEEEECCCcCCC
Confidence 478999999999999999999999999999999 99999999999999999999999987 69999999999999
Q ss_pred CCCChHHHHHHhhccccccHHHH-------HHhcccccC----CCcccccc---------ce-eE---ECCEEEEEcCCC
Q 011289 369 PRDVTPEATKELIERETPGLLYV-------MMQESLKVT----PFAMLSRS---------AA-GI---RGSTLIINMPGN 424 (489)
Q Consensus 369 ~~D~T~eav~~~~~~~l~g~~e~-------~~~~~~~~~----p~a~l~r~---------~~-g~---~~~~~v~~LPG~ 424 (489)
+||+|.|++++++++++.-..++ +..++..+. .+|.++.+ ++ |+ .+++.++.|||+
T Consensus 74 ~DDiT~e~vAka~g~~lv~~~~al~~i~~~~~~r~~~~~~~~~K~A~~P~Ga~~l~NpvG~APG~~v~~~~~~v~~lPGv 153 (255)
T COG1058 74 HDDLTAEAVAKALGRPLVLDEEALAMIEEKYAKRGREMTEANRKQAMLPEGAEVLDNPVGTAPGFVVEGNGKNVYVLPGV 153 (255)
T ss_pred ccHhHHHHHHHHhCCCcccCHHHHHHHHHHHHhcCCCCChhhhhhccCCCCCEeCCCCCCCCCeeEEecCCeEEEEeCCC
Confidence 99999999999999987443322 223333332 35555332 22 43 257899999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhhcCCceeeeecCCCCCCccc-ccchhhhc----ccCCCCCCC
Q 011289 425 PNAVAECMEALL-PALKHALKQIKGDKREKHPRHVPHSQAVP-VDTWEHSY----KMSSGGGTE 482 (489)
Q Consensus 425 P~a~~~~~~~il-p~l~~~~~~~~~~~~~~~~~~~~es~l~~-~~~~~~~~----~~~~~~~~~ 482 (489)
|.+++.||+.++ |++.........+.+.++++|++||+|++ +++..+.+ ..++|+..+
T Consensus 154 P~Em~~M~e~~~~~~l~~~~~~~~~~~~~~~~~gi~ES~la~~L~~i~~~~~~~~i~s~p~~~~ 217 (255)
T COG1058 154 PSEMKPMFENVLLPLLTGRFPSTKYYSRVLRVFGIGESSLAPTLKDLQDEQPNVTIASYPKDGE 217 (255)
T ss_pred CHHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCChHHHHHHHHHHHhcCCCCEEEecCCCCc
Confidence 999999999965 65554333334446789999999999999 66665533 456665544
No 16
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=99.97 E-value=1.4e-30 Score=237.61 Aligned_cols=142 Identities=23% Similarity=0.387 Sum_probs=126.5
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhc-CCCEEEEeCCCc
Q 011289 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSA-GIDILLTSGGVS 87 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~-~~DlvittGG~s 87 (489)
.||+||++|||+. .||++|+|+++|+++|+++|+++..+.+++||+++|+++|++++++ ++|+||||||+|
T Consensus 1 ~~~~ii~~~~e~~--------~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s 72 (152)
T cd00886 1 LRAAVLTVSDTRS--------AGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG 72 (152)
T ss_pred CEEEEEEEcCccc--------CCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 4899999999998 7999999999999999999999999999999999999999999861 499999999999
Q ss_pred CCCCCchHHHHHhc------C-CeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHHH
Q 011289 88 MGDKDFVKPLLQKK------G-TIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAIR 160 (489)
Q Consensus 88 ~G~~D~~~~~l~~~------G-~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~ 160 (489)
+|++|+++++++++ | +..|++++|+||++.++++.... ..++++||+|||||.|++++|+. +.|+|+
T Consensus 73 ~g~~D~t~~al~~~~~~~l~g~~~~~~~~~~~pg~~~~~~~~~~g-----~~~~~~v~~LPG~P~aa~~~~~~-v~P~l~ 146 (152)
T cd00886 73 LAPRDVTPEATRPLLDKELPGFGEAFRALSLEETGTAMLSRAVAG-----IRGGTLIFNLPGSPKAVREALEV-ILPELP 146 (152)
T ss_pred CCCCcCcHHHHHHHhCCcCccHHHHHHHhhcccCCcEEEechhhe-----EECCEEEEECCCCHHHHHHHHHH-HHHHHH
Confidence 99999999999998 5 57899999999998876543100 01259999999999999999999 999999
Q ss_pred HhcC
Q 011289 161 HLSG 164 (489)
Q Consensus 161 ~l~G 164 (489)
++..
T Consensus 147 ~~~~ 150 (152)
T cd00886 147 HLLD 150 (152)
T ss_pred HHHH
Confidence 8864
No 17
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=99.97 E-value=7.1e-30 Score=256.75 Aligned_cols=145 Identities=24% Similarity=0.394 Sum_probs=134.0
Q ss_pred eeeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEE
Q 011289 2 MVKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILL 81 (489)
Q Consensus 2 ~V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlvi 81 (489)
+|.||++|||+||+||||+. .|+++|+|+++|+++|+++|+++..+.+++||+++|++++++++++++|+||
T Consensus 153 ~V~v~r~~rv~II~TG~Ev~--------~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlII 224 (312)
T cd03522 153 RVAPFRPLRVGLIVTGSEVY--------GGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLI 224 (312)
T ss_pred EEEecCCCEEEEEEcCCcCC--------CCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEE
Confidence 79999999999999999975 6889999999999999999999999999999999999999999874599999
Q ss_pred EeCCCcCCCCCchHHHHHhcC-CeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHHH
Q 011289 82 TSGGVSMGDKDFVKPLLQKKG-TIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAIR 160 (489)
Q Consensus 82 ttGG~s~G~~D~~~~~l~~~G-~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~ 160 (489)
||||+|+|++|+++++++++| +++|+++.|+||+|+++|.++ +++||+|||||.|+..++..++.|.+
T Consensus 225 tTGGtsvg~~D~tp~Ai~~~G~ei~~~Gv~v~PG~~l~~g~~~----------~~pVigLPG~p~s~~~t~~d~VLprl- 293 (312)
T cd03522 225 LTGGASVDPDDVTPAAIRAAGGEVIRYGMPVDPGNLLLLGYLG----------GVPVIGLPGCARSPKLNGFDLVLPRL- 293 (312)
T ss_pred EeCCcccCCcchHHHHHHhcCceEEEeeecccCCceEEEEEEC----------CEEEEECCCCHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999 899999999999999999987 49999999999999988777778844
Q ss_pred HhcCCC
Q 011289 161 HLSGWA 166 (489)
Q Consensus 161 ~l~G~~ 166 (489)
+.|..
T Consensus 294 -lag~~ 298 (312)
T cd03522 294 -LAGER 298 (312)
T ss_pred -HcCCC
Confidence 55543
No 18
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=99.97 E-value=3.1e-29 Score=228.68 Aligned_cols=151 Identities=52% Similarity=0.832 Sum_probs=134.9
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCC
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 369 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~ 369 (489)
+|++||++|||+..|++.|+|+++++++|+++ |+++.++.+++||+++|+++|+++++..++|+||||||+|+|+
T Consensus 1 ~~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~-----G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~ 75 (152)
T cd00886 1 LRAAVLTVSDTRSAGEAEDRSGPALVELLEEA-----GHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAP 75 (152)
T ss_pred CEEEEEEEcCcccCCCCccchHHHHHHHHHHc-----CCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCC
Confidence 48999999999999999999999999999999 9999999999999999999999987533799999999999999
Q ss_pred CCChHHHHHHhhccccccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHHHHHHhh
Q 011289 370 RDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQ 445 (489)
Q Consensus 370 ~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l~~~~~~ 445 (489)
+|+|++++++++++++||+.+.++.++++..|..+++|..+|..++++||+|||+|.++..+|+.++|.|.+++..
T Consensus 76 ~D~t~~al~~~~~~~l~g~~~~~~~~~~~pg~~~~~~~~~~g~~~~~~v~~LPG~P~aa~~~~~~v~P~l~~~~~~ 151 (152)
T cd00886 76 RDVTPEATRPLLDKELPGFGEAFRALSLEETGTAMLSRAVAGIRGGTLIFNLPGSPKAVREALEVILPELPHLLDL 151 (152)
T ss_pred CcCcHHHHHHHhCCcCccHHHHHHHhhcccCCcEEEechhheEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999876555544444445667777889999999999999999999999977999877654
No 19
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=99.96 E-value=2.2e-29 Score=231.86 Aligned_cols=152 Identities=30% Similarity=0.473 Sum_probs=137.1
Q ss_pred CcceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 287 YTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 287 ~~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
+.+++++||++|||+. .+.|+|+++++++|++. |+++..+.+|+||.++|+++|+++++.+++|+||||||+|
T Consensus 2 ~~~~rv~vit~~d~~~--~~~d~n~~~l~~~L~~~-----G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 2 FIPLRIAILTVSDTRT--EEDDTSGQYLVERLTEA-----GHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred CCccEEEEEEEeCcCC--ccCCCcHHHHHHHHHHC-----CCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 5679999999999974 57999999999999999 9999999999999999999999986434799999999999
Q ss_pred CCCCCChHHHHHHhhccccccHHHHHHhcccccCC-Ccc--ccccceeEECCEEEEEcCCCHHHHHHHHHHH-HHHHHHH
Q 011289 367 FTPRDVTPEATKELIERETPGLLYVMMQESLKVTP-FAM--LSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHA 442 (489)
Q Consensus 367 ~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p-~a~--l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i-lp~l~~~ 442 (489)
+|++|+|++|+++++++++||+.+ .+++++++| |++ ++|+.+|+.++++||+|||+|.+++.+|+.+ .|.|.|.
T Consensus 75 ~g~~D~t~eal~~l~~~~l~G~~~--~~~~i~~~p~G~~~~lsr~~~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~~ 152 (163)
T TIGR02667 75 FTGRDVTPEALEPLFDKTVEGFGE--LFRQLSYEEIGTSTIQSRALAGLANGTFVFCLPGSTGACRTAWDKIIAAQLDAR 152 (163)
T ss_pred CCCCCCcHHHHHHHHCCcCCcHHH--HHHHHhhcccCHHHHHhhhhheeeCCeEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999976 466778988 776 5888899999999999999999999999985 6999886
Q ss_pred Hhhhc
Q 011289 443 LKQIK 447 (489)
Q Consensus 443 ~~~~~ 447 (489)
+....
T Consensus 153 ~~~~~ 157 (163)
T TIGR02667 153 HRPCN 157 (163)
T ss_pred hcccc
Confidence 65443
No 20
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=99.96 E-value=5.7e-29 Score=249.44 Aligned_cols=156 Identities=39% Similarity=0.670 Sum_probs=148.9
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCC
Q 011289 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF 367 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~ 367 (489)
++.+++||++|||+..|++.|+|+++++++|+++ |+++..+.++|||++.|+++|++++. +++|+||||||+|+
T Consensus 154 ~~~~~aIltvsde~~~G~i~Dsn~~~L~~~L~~~-----G~~v~~~~iVpDD~~~I~~al~~a~~-~~~DlIITTGGtg~ 227 (312)
T PRK03604 154 PRTSAAVLVLSDSIAAGTKEDRSGKLIVEGLEEA-----GFEVSHYTIIPDEPAEIAAAVAAWIA-EGYALIITTGGTGL 227 (312)
T ss_pred CccEEEEEEECCcCCCCcEEEhHHHHHHHHHHHC-----CCEEEEEEEcCCCHHHHHHHHHHhhh-CCCCEEEECCCCCC
Confidence 4468999999999999999999999999999999 99999999999999999999999963 37999999999999
Q ss_pred CCCCChHHHHHHhhccccccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011289 368 TPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHALKQIK 447 (489)
Q Consensus 368 t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l~~~~~~~~ 447 (489)
+++|+|+||+++++++.++|+.+.+++++..++|+++++|..+|+.++++||+|||+|.++..+|+.++|.|.|++.+++
T Consensus 228 g~~D~tpeAl~~lg~~~~~Gvae~ir~~g~~~~Pga~lsr~~~G~~~~tlI~~LPG~P~aa~~~~~~llp~l~h~~~~~~ 307 (312)
T PRK03604 228 GPRDVTPEALAPLLERRLPGIAEALRSWGQGRTPTAMLSRLVAGMIGNSLVVALPGSPGGASDALAVLLPALFHAFAMVK 307 (312)
T ss_pred CCCccHHHHHHHhcCccccchHHHHHhcccCCCCCcccCcceEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CC
Q 011289 448 GD 449 (489)
Q Consensus 448 ~~ 449 (489)
+.
T Consensus 308 g~ 309 (312)
T PRK03604 308 GE 309 (312)
T ss_pred CC
Confidence 75
No 21
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=99.96 E-value=4.7e-30 Score=231.96 Aligned_cols=134 Identities=40% Similarity=0.654 Sum_probs=123.0
Q ss_pred EEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCC
Q 011289 12 AVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDK 91 (489)
Q Consensus 12 ~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~ 91 (489)
|||+|||||+ .|+++|+|+++|.++|+++|+++..+.+++||+++|+++|++++++ +|+||||||+|+|++
T Consensus 1 aIi~~GdEl~--------~g~~~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~-~D~VittGG~g~~~~ 71 (144)
T PF00994_consen 1 AIISTGDELL--------SGQIRDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDR-ADLVITTGGTGPGPD 71 (144)
T ss_dssp EEEEECHHHH--------TTSSEBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHT-TSEEEEESSSSSSTT
T ss_pred CEEEECccCc--------CCceEEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhcc-CCEEEEcCCcCcccC
Confidence 7999999999 7999999999999999999999999999999999999999999884 899999999999999
Q ss_pred CchHHHHHhcCC-------eEEeeeeecCCCceeeEEE---ccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHHHH
Q 011289 92 DFVKPLLQKKGT-------IYFNKVCMKPGKPLTFAEI---NIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAIRH 161 (489)
Q Consensus 92 D~~~~~l~~~G~-------~~f~~v~~kPGkp~~~a~~---~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~~ 161 (489)
|++++++++++. .+||+++++||+|+.++.. +.. .++++|+|||||.++..+|+.++.|+|+|
T Consensus 72 D~t~~a~~~~~~~~l~~~~~~~~~~~~~pg~p~~~~~~~~~~~~-------~~~~v~~LPG~P~~~~~~~~~~v~P~L~~ 144 (144)
T PF00994_consen 72 DVTPEALAEAGGRELPGFEELFRGVSMRPGKPTGLAPGAYLSRK-------GGKPVFGLPGNPVAAKVMLEVLVLPLLRH 144 (144)
T ss_dssp CHHHHHHHHHSSEE-HHHHHHHHHHHHHSTTTCETEGGGGGTSS-------ETTEEEEE-SSHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHhcCcccccChHHHHHHHHHhhcccceeeEEEeeCC-------CCcEEEEcCCCHHHHHHHHHHHHHHhcCC
Confidence 999999999984 8899999999999999876 310 02469999999999999999999999986
No 22
>PRK01215 competence damage-inducible protein A; Provisional
Probab=99.96 E-value=2.1e-28 Score=241.40 Aligned_cols=178 Identities=21% Similarity=0.260 Sum_probs=146.7
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCC
Q 011289 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF 367 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~ 367 (489)
.+++++||+||||++.|++.|+|++++++.|.+. |+++.+..+|+||.+.|.++|+++++ ++|+||||||+|+
T Consensus 2 ~~~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~-----G~~v~~~~~v~Dd~~~I~~~l~~a~~--~~DlVIttGG~g~ 74 (264)
T PRK01215 2 DKWFAWIITIGNELLIGRTVNTNASWIARRLTYL-----GYTVRRITVVMDDIEEIVSAFREAID--RADVVVSTGGLGP 74 (264)
T ss_pred CCCEEEEEEEChhccCCeEEEhhHHHHHHHHHHC-----CCeEEEEEEeCCCHHHHHHHHHHHhc--CCCEEEEeCCCcC
Confidence 4789999999999999999999999999999999 99999999999999999999999987 7899999999999
Q ss_pred CCCCChHHHHHHhhccccccHHHHHHh-------ccccc----CCCcccccc-------------ceeEECCEEEEEcCC
Q 011289 368 TPRDVTPEATKELIERETPGLLYVMMQ-------ESLKV----TPFAMLSRS-------------AAGIRGSTLIINMPG 423 (489)
Q Consensus 368 t~~D~T~eav~~~~~~~l~g~~e~~~~-------~~~~~----~p~a~l~r~-------------~~g~~~~~~v~~LPG 423 (489)
|+||+|++|++++++++++...+.++. ++..+ ..++++|++ .....+++.||+|||
T Consensus 75 t~dD~t~eaia~~~g~~l~~~~e~~~~l~~~~~~~~~~~~~~~~k~A~~P~ga~~l~N~~Gtapg~~~~~~~~~i~~LPG 154 (264)
T PRK01215 75 TYDDKTNEGFAKALGVELELNEDALRMILEKYEKRGIPLTPERKKMAMMPPGAVPLENPVGTAPGILIEHGGKDIVALPG 154 (264)
T ss_pred ChhhhHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCCCChhHHheeeCCCCCEecCCCCCcCCeEEEEECCEEEEEeCC
Confidence 999999999999999999887655542 22223 234555543 122357889999999
Q ss_pred CHHHHHHHHHH-HHHHHHHHHhhhcCCceeeeecCCCCCCccc-ccchhhhc
Q 011289 424 NPNAVAECMEA-LLPALKHALKQIKGDKREKHPRHVPHSQAVP-VDTWEHSY 473 (489)
Q Consensus 424 ~P~a~~~~~~~-ilp~l~~~~~~~~~~~~~~~~~~~~es~l~~-~~~~~~~~ 473 (489)
+|.+++.||+. ++|+|... ..-....+.++++|++||++++ +.++...+
T Consensus 155 ~P~e~~~m~~~~v~p~l~~~-~~~~~~~~~~~~~Gi~Es~l~~~l~~l~~~~ 205 (264)
T PRK01215 155 VPREMEAIFENFVEPLLKNR-PPLKYYEDSILVEGVMESDLAPYVKELVKKY 205 (264)
T ss_pred ChHHHHHHHHHHHHHHHhcc-CCCcEEEEEEEECCCCHHHHHHHHHHHHHhC
Confidence 99999999998 56987754 2212334678899999999999 66664443
No 23
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=99.95 E-value=1.3e-28 Score=257.34 Aligned_cols=172 Identities=26% Similarity=0.377 Sum_probs=158.2
Q ss_pred cCCCCccccCCcEEEEEEecccccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEEEeCCccc-------CCC
Q 011289 233 LPATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGA 305 (489)
Q Consensus 233 ip~g~~~i~~G~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii~~GdEi~-------~G~ 305 (489)
+.+|+..+++|+.++...+..|++.|+.+|+| |+++||+||+||||+. .|+
T Consensus 134 i~~G~~ll~~G~~l~p~~i~~Las~Gi~~v~V----------------------~~~~rv~ii~tGdEl~~~g~~~~~g~ 191 (394)
T cd00887 134 IKAGDVLLPAGTRLTPADIGLLASLGIAEVPV----------------------YRRPRVAIISTGDELVEPGEPLAPGQ 191 (394)
T ss_pred cCCCCEEECCCCCCCHHHHHHHHhCCCCEEEE----------------------ecCCEEEEEeCCCcccCCCCCCCCCE
Confidence 34566778899999999999999999999999 9999999999999997 799
Q ss_pred ccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhcccc
Q 011289 306 GPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERET 385 (489)
Q Consensus 306 ~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l 385 (489)
+.|+|++++.++|+++ |+++..+.+++||.+.|+++|+++++ ++|+||||||+|++++|+|++++++++..
T Consensus 192 i~dsn~~~l~~~l~~~-----G~~~~~~~~v~Dd~~~i~~~l~~a~~--~~DliittGG~s~g~~D~~~~al~~~g~~-- 262 (394)
T cd00887 192 IYDSNSYMLAALLREL-----GAEVVDLGIVPDDPEALREALEEALE--EADVVITSGGVSVGDYDFVKEVLEELGGE-- 262 (394)
T ss_pred EEEChHHHHHHHHHHC-----CCEEEEeceeCCCHHHHHHHHHHHhh--CCCEEEEeCCCCCCcchhHHHHHHhCCCe--
Confidence 9999999999999999 99999999999999999999999987 79999999999999999999999999543
Q ss_pred ccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHH-HHHHHHHHh
Q 011289 386 PGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 444 (489)
Q Consensus 386 ~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i-lp~l~~~~~ 444 (489)
+.|++++++||+++ ++|..++++||+|||+|.++..+|+.+ .|.|.++..
T Consensus 263 ------~~f~gv~~kPG~p~---~~g~~~~~~v~~LPG~P~sa~~~~~~~v~p~l~~l~g 313 (394)
T cd00887 263 ------VLFHGVAMKPGKPL---AFGRLGGKPVFGLPGNPVSALVTFELFVRPALRKLQG 313 (394)
T ss_pred ------EEEEEEEEecCCCE---EEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 46899999999996 889999999999999999999999986 587766544
No 24
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=99.95 E-value=1.6e-28 Score=254.55 Aligned_cols=171 Identities=24% Similarity=0.379 Sum_probs=158.0
Q ss_pred cCCCCccccCCcEEEEEEecccccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEEEeCCccc-------CCC
Q 011289 233 LPATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGA 305 (489)
Q Consensus 233 ip~g~~~i~~G~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii~~GdEi~-------~G~ 305 (489)
+..|...+++|+.+....+..|++.|+.+|+| |++|||+||+||||+. .|+
T Consensus 142 i~~G~vil~~G~~L~p~~i~llas~Gi~~V~V----------------------~rkprV~IisTGdELv~~~~~l~~gq 199 (404)
T COG0303 142 VAKGDVILRAGTRLTPAEIALLASLGIAEVKV----------------------YRKPRVAIISTGDELVEPGQPLEPGQ 199 (404)
T ss_pred ccCCCEeecCCCCcCHHHHHHHHhCCCceEEE----------------------ecCCEEEEEecCccccCCCCCCCCCe
Confidence 45667778899999999999999999999999 9999999999999996 378
Q ss_pred ccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHH-Hhhccc
Q 011289 306 GPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATK-ELIERE 384 (489)
Q Consensus 306 ~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~-~~~~~~ 384 (489)
+.|+|++++..+|+++ |+++..+.+++||+++++++++++++ .+|+||||||+|++..|+++++++ ++++
T Consensus 200 I~dsN~~~l~a~l~~~-----G~e~~~~giv~Dd~~~l~~~i~~a~~--~~DviItsGG~SvG~~D~v~~~l~~~lG~-- 270 (404)
T COG0303 200 IYDSNSYMLAALLERA-----GGEVVDLGIVPDDPEALREAIEKALS--EADVIITSGGVSVGDADYVKAALERELGE-- 270 (404)
T ss_pred EEecCHHHHHHHHHHc-----CCceeeccccCCCHHHHHHHHHHhhh--cCCEEEEeCCccCcchHhHHHHHHhcCCc--
Confidence 9999999999999999 99999999999999999999999987 799999999999999999999999 5875
Q ss_pred cccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHH-HHHHHHHHh
Q 011289 385 TPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 444 (489)
Q Consensus 385 l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i-lp~l~~~~~ 444 (489)
+.+|+++|+||+|+ .+|.++++.||+|||||.++..+|+.| .|.|..+..
T Consensus 271 -------v~~~gia~kPGkP~---~~g~~~~~~v~gLPGnPvSalv~f~~~v~p~l~~~~g 321 (404)
T COG0303 271 -------VLFHGVAMKPGKPT---GLGRLGGKPVFGLPGNPVSALVNFELFVRPLLRKLLG 321 (404)
T ss_pred -------EEEEeeeecCCCce---EEEEECCcEEEECCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 46999999999997 899999999999999999999999986 587766543
No 25
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=99.95 E-value=2.7e-28 Score=220.44 Aligned_cols=140 Identities=36% Similarity=0.556 Sum_probs=122.7
Q ss_pred EEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCC
Q 011289 293 AILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDV 372 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~ 372 (489)
|||+||||++.|++.|+|+++++++|++. |+++.++.++|||+++|+++|+++++ ++|+||||||+|+|++|+
T Consensus 1 aIi~~GdEl~~g~~~d~n~~~l~~~l~~~-----G~~v~~~~~v~Dd~~~i~~~l~~~~~--~~D~VittGG~g~~~~D~ 73 (144)
T PF00994_consen 1 AIISTGDELLSGQIRDSNGPFLAALLEEL-----GIEVIRYGIVPDDPDAIKEALRRALD--RADLVITTGGTGPGPDDV 73 (144)
T ss_dssp EEEEECHHHHTTSSEBHHHHHHHHHHHHT-----TEEEEEEEEEESSHHHHHHHHHHHHH--TTSEEEEESSSSSSTTCH
T ss_pred CEEEECccCcCCceEEhHHHHHHHHHHHc-----CCeeeEEEEECCCHHHHHHHHHhhhc--cCCEEEEcCCcCcccCCc
Confidence 69999999999999999999999999999 99999999999999999999999988 789999999999999999
Q ss_pred hHHHHHHhhccccccHHHHHHhcccccCCCccccccceeEEC---CEEEEEcCCCHHHHHHHHHHHH-HHHHH
Q 011289 373 TPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRG---STLIINMPGNPNAVAECMEALL-PALKH 441 (489)
Q Consensus 373 T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~---~~~v~~LPG~P~a~~~~~~~il-p~l~~ 441 (489)
|+++++++++++++++.+. +++++++||++...+..+..+ +++||+|||+|.+++.+|+.++ |.|+|
T Consensus 74 t~~a~~~~~~~~l~~~~~~--~~~~~~~pg~p~~~~~~~~~~~~~~~~v~~LPG~P~~~~~~~~~~v~P~L~~ 144 (144)
T PF00994_consen 74 TPEALAEAGGRELPGFEEL--FRGVSMRPGKPTGLAPGAYLSRKGGKPVFGLPGNPVAAKVMLEVLVLPLLRH 144 (144)
T ss_dssp HHHHHHHHSSEE-HHHHHH--HHHHHHHSTTTCETEGGGGGTSSETTEEEEE-SSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhcCcccccChHH--HHHHHHHhhcccceeeEEEeeCCCCcEEEEcCCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999864 567889999876222222223 3369999999999999999976 98865
No 26
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=99.95 E-value=3.2e-28 Score=254.42 Aligned_cols=171 Identities=20% Similarity=0.287 Sum_probs=157.2
Q ss_pred cCCCCccccCCcEEEEEEecccccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEEEeCCccc-------CCC
Q 011289 233 LPATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGA 305 (489)
Q Consensus 233 ip~g~~~i~~G~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii~~GdEi~-------~G~ 305 (489)
+.+|+..+++|+.++...+..|++.|+.+|+| |++|||+||+||||+. .|+
T Consensus 143 ~~~G~~ll~~G~~l~p~~i~lLas~G~~~V~V----------------------~~~prV~iistGdEl~~~~~~~~~g~ 200 (411)
T PRK10680 143 ISQGAVVFPAGTRLTTAELPVLASLGIAEVPV----------------------VRKVRVALFSTGDELQLPGQPLGDGQ 200 (411)
T ss_pred cCCCCEEECCcCCCCHHHHHHHHhCCCCeEEe----------------------cCCCEEEEEccCCeEeCCCCCCCCCE
Confidence 45667778999999999999999999999999 9999999999999995 589
Q ss_pred ccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhcccc
Q 011289 306 GPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERET 385 (489)
Q Consensus 306 ~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l 385 (489)
+.|+|+++++++|+++ |+++..+.+++||+++|+++|+++.+ ++|+||||||+|.+++|+++++++++++
T Consensus 201 i~dsn~~~l~a~l~~~-----G~~~~~~~~v~Dd~~~i~~~l~~a~~--~~DlvIttGG~S~G~~D~~~~al~~lG~--- 270 (411)
T PRK10680 201 IYDTNRLAVHLMLEQL-----GCEVINLGIIRDDPHALRAAFIEADS--QADVVISSGGVSVGEADYTKTILEELGE--- 270 (411)
T ss_pred EEEhHHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHhcc--CCCEEEEcCCCCCCCcchHHHHHHhcCc---
Confidence 9999999999999999 99999999999999999999999865 8999999999999999999999999873
Q ss_pred ccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHH-HHHHHHHHh
Q 011289 386 PGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 444 (489)
Q Consensus 386 ~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i-lp~l~~~~~ 444 (489)
+.||+++|+||+|+ ++|..++++||+|||+|.++..+|+.| .|+|.++..
T Consensus 271 ------~~f~~v~~kPGkp~---~~g~~~~~~v~gLPGnP~sa~~~~~~~v~P~l~~l~g 321 (411)
T PRK10680 271 ------IAFWKLAIKPGKPF---AFGKLSNSWFCGLPGNPVSAALTFYQLVQPLLAKLSG 321 (411)
T ss_pred ------EEEEEEEEecCcce---EEEEECCeEEEECCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 46899999999997 789999999999999999999999986 587766543
No 27
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=99.95 E-value=4.8e-28 Score=253.49 Aligned_cols=169 Identities=23% Similarity=0.304 Sum_probs=155.9
Q ss_pred CCCCccccCCcEEEEEEecccccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEEEeCCccc-------CCCc
Q 011289 234 PATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGAG 306 (489)
Q Consensus 234 p~g~~~i~~G~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii~~GdEi~-------~G~~ 306 (489)
-+|+..+++|+.++...+..|++.|+.+|+| |+++||+||+||||+. .|++
T Consensus 160 ~~G~~ll~~G~~l~p~~i~~Las~G~~~V~V----------------------~~~prV~IisTGdEl~~~g~~~~~g~i 217 (419)
T PRK14690 160 IAGDVALPAGRRLTPADLALLSAVGLTRVSV----------------------RRPLRVAVLSTGDELVEPGALAEVGQI 217 (419)
T ss_pred CCCCEEECCCCCCCHHHHHHHHhCCCCeeEe----------------------ecCCEEEEEEccccccCCCCCCCCCeE
Confidence 4566678899999999999999999999999 9999999999999997 5899
Q ss_pred cCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccccc
Q 011289 307 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETP 386 (489)
Q Consensus 307 ~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~ 386 (489)
.|+|+++++++|+++ |+++..+.+++||.+.|+++|+++++ ++|+||||||+|.+.+|+++++++++++
T Consensus 218 ~dsN~~~L~a~l~~~-----G~~v~~~~~v~Dd~~~i~~~l~~a~~--~~DlIItTGG~S~G~~D~v~~~l~~~G~---- 286 (419)
T PRK14690 218 YDANRPMLLALARRW-----GHAPVDLGRVGDDRAALAARLDRAAA--EADVILTSGGASAGDEDHVSALLREAGA---- 286 (419)
T ss_pred EeCHHHHHHHHHHHC-----CCEEEEEeeeCCCHHHHHHHHHHhCc--cCCEEEEcCCccCCCcchHHHHHHhcCC----
Confidence 999999999999999 99999999999999999999999976 8999999999999999999999999874
Q ss_pred cHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHHH-HHHHHHH
Q 011289 387 GLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALL-PALKHAL 443 (489)
Q Consensus 387 g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~il-p~l~~~~ 443 (489)
+.+++++|+||+|+ ++|.+++++||+|||||.++..+|+.|+ |.|..+.
T Consensus 287 -----~~~~~v~mkPGkp~---~~~~~~~~pv~gLPGnP~aa~~~~~~~v~P~l~~l~ 336 (419)
T PRK14690 287 -----MQSWRIALKPGRPL---ALGLWQGVPVFGLPGNPVAALVCTLVFARPAMSLLA 336 (419)
T ss_pred -----EEEcceeecCCCce---EEEEECCeEEEECCCCHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999997 8899999999999999999999999974 8776543
No 28
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=99.95 E-value=6e-28 Score=257.81 Aligned_cols=170 Identities=22% Similarity=0.335 Sum_probs=157.4
Q ss_pred cCCCCccccCCcEEEEEEecccccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEEEeCCccc-------CCC
Q 011289 233 LPATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGA 305 (489)
Q Consensus 233 ip~g~~~i~~G~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii~~GdEi~-------~G~ 305 (489)
+.+|+..+++|+.++...+..|+++|+.+|+| |++|||+||+||||+. .|+
T Consensus 145 i~~Gelll~~G~~L~p~~IglLas~Gi~~V~V----------------------~~rprV~IisTGdELv~pg~~l~~G~ 202 (546)
T PRK14497 145 IPKGSIILRKGEVISHEKIGLLASLGISSVKV----------------------YEKPKIYLIATGDELVEPGNSLSPGK 202 (546)
T ss_pred cCCCCEEECCCCCCCHHHHHHHHhCCCCEEee----------------------ccCCEEEEEEcCCcccCCCCCCCCCc
Confidence 45677778999999999999999999999999 9999999999999996 589
Q ss_pred ccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhcccc
Q 011289 306 GPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERET 385 (489)
Q Consensus 306 ~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l 385 (489)
+.|+|+++++++|+++ |+++..+.+++||+++|+++|+++++ ++|+||||||+|++.+|+|++++.++++
T Consensus 203 I~dsNs~~L~a~l~~~-----G~~v~~~~iv~Dd~e~i~~~l~~al~--~~DlVIttGGtS~G~~D~~~~al~~lG~--- 272 (546)
T PRK14497 203 IYESNLHYLYSKLKSE-----GYKIVGLSLLSDDKESIKNEIKRAIS--VADVLILTGGTSAGEKDFVHQAIRELGN--- 272 (546)
T ss_pred EEEhHHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHhhh--cCCEEEEcCCccCCCCccHHHHHhhcCc---
Confidence 9999999999999999 99999999999999999999999987 8999999999999999999999999984
Q ss_pred ccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHHH-HHHHHHH
Q 011289 386 PGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALL-PALKHAL 443 (489)
Q Consensus 386 ~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~il-p~l~~~~ 443 (489)
+.+|+++++||+|+ ++|..++++||+|||+|.++..+|+.|+ |.|..+.
T Consensus 273 ------v~f~GV~ikPGKP~---~~g~~~gkpV~gLPG~P~Sa~v~f~~fV~P~L~~l~ 322 (546)
T PRK14497 273 ------IIVHGLKIKPGKPT---ILGIVDGKPVIGLPGNIVSTMVVLNMVILEYLKSLY 322 (546)
T ss_pred ------EEEcceeecCCCcE---EEEEECCEEEEEcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999997 7899999999999999999999999875 7665553
No 29
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=99.95 E-value=2.4e-27 Score=211.43 Aligned_cols=131 Identities=46% Similarity=0.680 Sum_probs=120.8
Q ss_pred EEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCC
Q 011289 291 SVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPR 370 (489)
Q Consensus 291 ~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~ 370 (489)
|++||++|||+..|++.|+|+++++++|+++ |+++.+..+++||+++|+++++++++ ++|+||||||+|++++
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~-----G~~v~~~~~v~Dd~~~i~~~i~~~~~--~~DlvittGG~g~g~~ 73 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDL-----GCEVIYAGVVPDDADSIRAALIEASR--EADLVLTTGGTGVGRR 73 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHC-----CCEEEEeeecCCCHHHHHHHHHHHHh--cCCEEEECCCCCCCCC
Confidence 5899999999999999999999999999999 99999999999999999999999987 6999999999999999
Q ss_pred CChHHHHHHhhccccccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHH-HHH
Q 011289 371 DVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPA 438 (489)
Q Consensus 371 D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i-lp~ 438 (489)
|+|++++++++++.++| ++.+++||++. .+|..++++||+|||+|.+++.+|+.+ +|.
T Consensus 74 D~t~~ai~~~g~~~~~g-------~~~~~~pg~~~---~~~~~~~~~i~~LPG~p~a~~~~~~~~v~p~ 132 (133)
T cd00758 74 DVTPEALAELGEREAHG-------KGVALAPGSRT---AFGIIGKVLIINLPGSPKSALTTFEALVLPA 132 (133)
T ss_pred cchHHHHHHhcCEEecc-------CcccccCCCce---EEEEECCEEEEECCCCHHHHHHHHHHhheec
Confidence 99999999999765332 37889999985 889999999999999999999999985 464
No 30
>PRK03673 hypothetical protein; Provisional
Probab=99.94 E-value=7e-27 Score=241.96 Aligned_cols=174 Identities=19% Similarity=0.226 Sum_probs=142.1
Q ss_pred ceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011289 289 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
+||++||+||||++.|++.|+|++++++.|.+. |+++.+..+++||+++|.++|+.+++ ++|+||||||+|||
T Consensus 1 ~~~v~Iis~GdEll~G~i~dtN~~~la~~L~~~-----G~~v~~~~~v~D~~~~i~~~l~~a~~--~~DlVI~tGGlGpt 73 (396)
T PRK03673 1 MLRVEMLSTGDEVLHGQIVDTNAAWLADFFFHQ-----GLPLSRRNTVGDNLDALVAILRERSQ--HADVLIVNGGLGPT 73 (396)
T ss_pred CCEEEEEEecccCCCCeEEEhHHHHHHHHHHHC-----CCEEEEEEEcCCCHHHHHHHHHHHhc--cCCEEEEcCCCCCC
Confidence 489999999999999999999999999999999 99999999999999999999999987 89999999999999
Q ss_pred CCCChHHHHHHhhcccccc-------HHHHHHhccccc----CCCccccc---------cce-eE---ECCEEEEEcCCC
Q 011289 369 PRDVTPEATKELIERETPG-------LLYVMMQESLKV----TPFAMLSR---------SAA-GI---RGSTLIINMPGN 424 (489)
Q Consensus 369 ~~D~T~eav~~~~~~~l~g-------~~e~~~~~~~~~----~p~a~l~r---------~~~-g~---~~~~~v~~LPG~ 424 (489)
+||+|++|+++++++++.- +.+.+..++..| ..++.+|. +++ |+ .+++.+|.|||+
T Consensus 74 ~dD~t~~avA~a~g~~L~~d~e~~~~i~~~f~~~~~~m~~~n~kQA~~P~ga~~l~N~~GtApG~~~~~~~~~i~~LPGv 153 (396)
T PRK03673 74 SDDLSALAAATAAGEGLVLHEEWLAEMERFFAERGRVMAPSNRKQAELPASAEMIDNPVGTACGFALQLNRCLMFFTPGV 153 (396)
T ss_pred CcccHHHHHHHHcCCCceeCHHHHHHHHHHHHhcCCCCChhHHhhccCCCCCeeccCCCccCCcEEEEECCEEEEEECCC
Confidence 9999999999999998732 333333333334 23454432 333 43 367899999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHhh-hcCCceeeeecCCCCCCccc-ccch
Q 011289 425 PNAVAECMEA-LLPALKHALKQ-IKGDKREKHPRHVPHSQAVP-VDTW 469 (489)
Q Consensus 425 P~a~~~~~~~-ilp~l~~~~~~-~~~~~~~~~~~~~~es~l~~-~~~~ 469 (489)
|.+++.||+. ++|.|...+.. -....+.++++|++||++++ +.++
T Consensus 154 P~Emk~M~~~~v~p~L~~~~~~~~~~~~~~l~~~Gi~ES~l~~~l~~l 201 (396)
T PRK03673 154 PSEFKVMVEQEILPRLRERFSLPEPPLCLRLTTFGRSESDLAQSLDPL 201 (396)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEECCCCHHHHHHHHHHH
Confidence 9999999987 78988764321 12224567889999999999 6666
No 31
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=99.94 E-value=2e-26 Score=208.29 Aligned_cols=135 Identities=39% Similarity=0.620 Sum_probs=120.1
Q ss_pred eEEEEEEeCCcccC-------CCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEe
Q 011289 290 FSVAILTVSDTVAS-------GAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTL 362 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~-------G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVItt 362 (489)
||++|+++|||++. |++.|+|+++++++|+++ |+++..+.+++||+++|+++|+++++ ++|+||||
T Consensus 1 prv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~-----G~~v~~~~~v~Dd~~~i~~~l~~~~~--~~DliItt 73 (144)
T TIGR00177 1 PRVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEA-----GFNVSRLGIVPDDPEEIREILRKAVD--EADVVLTT 73 (144)
T ss_pred CEEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHC-----CCeEEEEeecCCCHHHHHHHHHHHHh--CCCEEEEC
Confidence 68999999999995 999999999999999999 99999999999999999999999987 89999999
Q ss_pred CCCCCCCCCChHHHHHHhhccccccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHHH
Q 011289 363 GGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALL 436 (489)
Q Consensus 363 GG~G~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~il 436 (489)
||+|++++|+|++|++++++...+|+.++ ...+.++||++. .+|..++++||+|||+|.+++.+|+.++
T Consensus 74 GG~g~g~~D~t~~ai~~~g~~~~~gv~~~--~~~~~~~PG~~~---~~~~~~~~~v~~LPG~P~aa~~~~~~~v 142 (144)
T TIGR00177 74 GGTGVGPRDVTPEALEELGEKEIPGFGEY--FTAVLSRPGKPA---TAGVRGGTLIFGLPGNPVSALVTFEVLV 142 (144)
T ss_pred CCCCCCCCccHHHHHHHhCcEEEeeeccc--cchhhCCCCCce---EEEEECCEEEEECCCCHHHHHHHHHHHc
Confidence 99999999999999999986543333221 122289999996 7788999999999999999999999864
No 32
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=99.94 E-value=5.3e-27 Score=255.77 Aligned_cols=166 Identities=21% Similarity=0.288 Sum_probs=152.2
Q ss_pred ccccCCcEEEEEEecccccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEEEeCCccc-------CCCccCCc
Q 011289 238 SVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGAGPDRS 310 (489)
Q Consensus 238 ~~i~~G~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii~~GdEi~-------~G~~~D~n 310 (489)
..+++|+.++...+..|+++|+.+|+| |+++||+||+||||+. .|++.|+|
T Consensus 338 ~ll~~G~~i~p~~i~lLAs~Gi~~V~V----------------------~~~prV~IistGdEl~~~g~~~~~g~i~dsn 395 (597)
T PRK14491 338 VALAAGTRLSAPEQGLLASLGFAEVPV----------------------FRRPKVAVFSTGDEVQAPGETLKPNCIYDSN 395 (597)
T ss_pred EeECCcCCCCHHHHHHHHHCCCCeEEe----------------------ccCCEEEEEecCCeeccCCCcCCCCcEEeCC
Confidence 346777888888889999999999999 9999999999999996 37899999
Q ss_pred hHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccccccHHH
Q 011289 311 GPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLY 390 (489)
Q Consensus 311 ~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~g~~e 390 (489)
+++++++|+++ |+++..+.+++||.+.|+++|+++++ ++|+||||||+|++.+|+++++++++++
T Consensus 396 ~~~L~~~l~~~-----G~~v~~~~~v~Dd~~~i~~~l~~a~~--~~DlIIttGG~s~G~~D~~~~al~~lG~-------- 460 (597)
T PRK14491 396 RFTIKAMAKKL-----GCEVIDLGIIEDSEAALEATLEQAAA--QADVVISSGGVSVGDADYIKTALAKLGQ-------- 460 (597)
T ss_pred HHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHhhh--cCCEEEEcCCccCCCcccHHHHHHhcCc--------
Confidence 99999999999 99999999999999999999999986 8999999999999999999999999873
Q ss_pred HHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHH-HHHHHHHHh
Q 011289 391 VMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 444 (489)
Q Consensus 391 ~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i-lp~l~~~~~ 444 (489)
+.|++++|+||+|+ .+|.+++++||+|||||.++..+|+.| .|.|.++..
T Consensus 461 -i~f~~v~~kPGkp~---~~g~~~~~~v~~LPGnP~aa~~~~~~~v~P~l~~l~g 511 (597)
T PRK14491 461 -IDFWRINMRPGRPL---AFGQIGDSPFFGLPGNPVAVMVSFLQFVEPALRKLAG 511 (597)
T ss_pred -EEEEEEEeecCCcE---EEEEECCEEEEEccCCcHHHHHHHHHHHHHHHHHHcC
Confidence 46899999999997 789999999999999999999999886 588876544
No 33
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=99.94 E-value=1.4e-26 Score=207.04 Aligned_cols=127 Identities=31% Similarity=0.451 Sum_probs=113.4
Q ss_pred EEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCC
Q 011289 12 AVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDK 91 (489)
Q Consensus 12 ~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~ 91 (489)
+|++|||||+. .++++|+|+++|+++|+++|+++..+.+++||++.|+++|+++++ ++|+||||||+|+|++
T Consensus 1 ~vi~~GdEi~~-------~~~~~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~-~~dliittGG~g~g~~ 72 (135)
T smart00852 1 AIISTGDELLS-------GGQIYDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALE-RADLVITTGGTGPGPD 72 (135)
T ss_pred CEEEEechhhc-------CCCcccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHh-CCCEEEEcCCCCCCCC
Confidence 58999999984 358899999999999999999999999999999999999999987 5999999999999999
Q ss_pred CchHHHHHhcC--CeEEeeeeecCCCceee-----EEEccCCCCccccccEEEEEcCCChHHHHHHHHH
Q 011289 92 DFVKPLLQKKG--TIYFNKVCMKPGKPLTF-----AEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHL 153 (489)
Q Consensus 92 D~~~~~l~~~G--~~~f~~v~~kPGkp~~~-----a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~ 153 (489)
|++++++++++ ++.|++++|+||+++.+ +.+.+ ..+++||+|||||.++..+|+.
T Consensus 73 D~t~~~l~~~~~~~~~~~~~~~~Pg~~~~~~~~~~~~~~g-------~~~~~i~~LPG~P~~~~~~~~~ 134 (135)
T smart00852 73 DVTPEAVAEALGKELPGFGEAMRPGGAPTVLANLSGTAPG-------FRGKLVFGLPGSPVAARAMLEL 134 (135)
T ss_pred cCcHHHHHHHhCCcCCChhhhhcccCCccccccccCcCCe-------EeCcEEEECCCCHHHHHHHHHh
Confidence 99999999984 79999999999999877 43321 1136999999999999999874
No 34
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=99.94 E-value=4.6e-26 Score=237.73 Aligned_cols=174 Identities=18% Similarity=0.222 Sum_probs=140.2
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCC
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 369 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~ 369 (489)
++++||+||||++.|++.|+|+++++++|++. |+++.++.+|+||.++|.++|+++++ ++|+||||||+|+|+
T Consensus 1 m~v~Ii~tGdEll~G~i~dtN~~~l~~~L~~~-----G~~v~~~~~v~Dd~~~i~~~l~~a~~--~~DlVIttGGlgpt~ 73 (413)
T TIGR00200 1 LKAEIISVGDELLLGQIVNTNAQWLADFLAHQ-----GLPLSRRTTVGDNPERLKTIIRIASE--RADVLIFNGGLGPTS 73 (413)
T ss_pred CEEEEEEECccccCCcEEEchHHHHHHHHHHC-----CCeEEEEEEeCCCHHHHHHHHHHHhc--CCCEEEEcCCCCCCC
Confidence 68999999999999999999999999999999 99999999999999999999999986 899999999999999
Q ss_pred CCChHHHHHHhhccccc-------cHHHHHHhccccc----CCCcccc---------ccce-e---EE-CCEEEEEcCCC
Q 011289 370 RDVTPEATKELIERETP-------GLLYVMMQESLKV----TPFAMLS---------RSAA-G---IR-GSTLIINMPGN 424 (489)
Q Consensus 370 ~D~T~eav~~~~~~~l~-------g~~e~~~~~~~~~----~p~a~l~---------r~~~-g---~~-~~~~v~~LPG~ 424 (489)
||+|++++++++++++. .+.+.+...+..+ ..++.++ .+++ | .. +++.||+|||+
T Consensus 74 dD~t~eava~~~g~~l~~~~~~~~~i~~~~~~~g~~~~~~n~kqA~~p~ga~~l~N~~G~APG~~~~~~~~~~i~~LPG~ 153 (413)
T TIGR00200 74 DDLTAETIATAKGEPLVLNEAWLKEIERYFHETGRVMAPNNRKQALLPAGAEFLANPVGTAPGMFAVQLNRCLMLFTPGV 153 (413)
T ss_pred cccHHHHHHHHhCCCcEECHHHHHHHHHHHHhcCCCCChHHHHhcCCCCCCEECCCCCCCCCeeEEEecCCEEEEEeCCC
Confidence 99999999999998873 3334333333333 1233332 2222 3 23 37899999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHhh-hcCCceeeeecCCCCCCccc-ccchh
Q 011289 425 PNAVAECMEA-LLPALKHALKQ-IKGDKREKHPRHVPHSQAVP-VDTWE 470 (489)
Q Consensus 425 P~a~~~~~~~-ilp~l~~~~~~-~~~~~~~~~~~~~~es~l~~-~~~~~ 470 (489)
|.+++.||+. ++|+|...+.. -....+.++++|++||++++ ++++.
T Consensus 154 P~e~~~m~~~~v~p~l~~~~~~~~~~~~~~~~~~Gi~ES~l~~~l~~~~ 202 (413)
T TIGR00200 154 PSEFRVMVEHEALPRLRERFSLPQPIVSLVLRFFGIGESQLEADLADSL 202 (413)
T ss_pred cHHHHHHHHHHhhHHHHHhcCCCceEEEEEEEECCCCHHHHHHHHHHHH
Confidence 9999999998 46988764422 12335678999999999998 66664
No 35
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=99.93 E-value=1.4e-25 Score=225.61 Aligned_cols=172 Identities=22% Similarity=0.368 Sum_probs=148.0
Q ss_pred EEEcCCCCccccCCcEEE---EEEec-----------ccccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEE
Q 011289 230 LLELPATGSVISAGTLVS---AIVIS-----------DISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAIL 295 (489)
Q Consensus 230 l~~ip~g~~~i~~G~~V~---v~ll~-----------~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii 295 (489)
++-+|.+. .+++|+.|- +..|. .+++.|+.+|.+ |+++|++||
T Consensus 109 ~at~~~~~-~v~~g~~vA~~riiPl~v~~~~~~~a~~~~~~~gi~~V~v----------------------~r~~rv~II 165 (312)
T cd03522 109 LATLHNNT-PVEAGQMVATVKIIPLAVPEALVERAEALARDGPLLRVAP----------------------FRPLRVGLI 165 (312)
T ss_pred EEEcCCCe-EeCCCCEEEEEEEeeeecCHHHHHHHHHHHHhCCCcEEEe----------------------cCCCEEEEE
Confidence 34456553 677787553 33332 244568999999 999999999
Q ss_pred EeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHH
Q 011289 296 TVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPE 375 (489)
Q Consensus 296 ~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~e 375 (489)
+||||+..|++.|+|++++.++|+++ |+++..+.++|||+++|+++|+++++ +++|+||||||+|++++|+|++
T Consensus 166 ~TG~Ev~~G~i~D~~~~~l~~~L~~~-----G~~v~~~~iv~Dd~~~I~~ai~~~~~-~g~DlIItTGGtsvg~~D~tp~ 239 (312)
T cd03522 166 VTGSEVYGGRIEDKFGPVLRARLAAL-----GVELVEQVIVPHDEAAIAAAIAEALE-AGAELLILTGGASVDPDDVTPA 239 (312)
T ss_pred EcCCcCCCCcEEEhHHHHHHHHHHHC-----CCEEEEEEEcCCCHHHHHHHHHHHhc-CCCCEEEEeCCcccCCcchHHH
Confidence 99999999999999999999999999 99999999999999999999999986 3599999999999999999999
Q ss_pred HHHHhhccccccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHH-HHHHHHHHHHH
Q 011289 376 ATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAE-CMEALLPALKH 441 (489)
Q Consensus 376 av~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~-~~~~ilp~l~~ 441 (489)
|+++++.. +.+++++++||+++ .+|..++++||+|||+|.+++. .|++++|.+.+
T Consensus 240 Ai~~~G~e--------i~~~Gv~v~PG~~l---~~g~~~~~pVigLPG~p~s~~~t~~d~VLprlla 295 (312)
T cd03522 240 AIRAAGGE--------VIRYGMPVDPGNLL---LLGYLGGVPVIGLPGCARSPKLNGFDLVLPRLLA 295 (312)
T ss_pred HHHhcCce--------EEEeeecccCCceE---EEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHc
Confidence 99999753 56889999999998 6788999999999999999985 67888995543
No 36
>PRK03670 competence damage-inducible protein A; Provisional
Probab=99.93 E-value=1.2e-25 Score=220.03 Aligned_cols=180 Identities=26% Similarity=0.250 Sum_probs=138.2
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCC
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 369 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~ 369 (489)
++++||+||||++.|++.|+|++++++.|++. |+++.++.+|+||.++|.++|+.++. +.+|+||||||+|+|+
T Consensus 1 m~a~Ii~iGdEll~G~i~dtN~~~la~~L~~~-----G~~v~~~~iV~Dd~~~I~~~l~~a~~-~~~DlVIttGGlGpt~ 74 (252)
T PRK03670 1 MFAEIITVGDELLTGNTVDSNSAFIAQKLTEK-----GYWVRRITTVGDDVEEIKSVVLEILS-RKPEVLVISGGLGPTH 74 (252)
T ss_pred CEEEEEEeCCcCcCCeEEehhHHHHHHHHHHC-----CCEEEEEEEcCCCHHHHHHHHHHHhh-CCCCEEEECCCccCCC
Confidence 58999999999999999999999999999999 99999999999999999999999875 3589999999999999
Q ss_pred CCChHHHHHHhhccccccHHH-------HHHhccc-------cc----CCCcccccc---------ce-eE---ECCEEE
Q 011289 370 RDVTPEATKELIERETPGLLY-------VMMQESL-------KV----TPFAMLSRS---------AA-GI---RGSTLI 418 (489)
Q Consensus 370 ~D~T~eav~~~~~~~l~g~~e-------~~~~~~~-------~~----~p~a~l~r~---------~~-g~---~~~~~v 418 (489)
||+|++|+++++++++....+ ++...+. .+ ..++.+|.+ .+ |+ .+++.|
T Consensus 75 dD~T~eava~a~g~~l~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~kmA~~P~ga~~l~N~~g~ApG~~~~~~~~~v 154 (252)
T PRK03670 75 DDVTMLAVAEALGRELVLCEDCLERIKEFYEELYKKGLIDDPTLNEARKKMAYLPEGAEPLENTEGAAPGAYIEHKGTKI 154 (252)
T ss_pred CCchHHHHHHHhCCCCcCCHHHHHHHHHHHHHhcccccccccccChHHHheeCCCCCCEECCCCCCcCceEEEEECCeEE
Confidence 999999999999998854332 2221111 11 123444322 22 43 356799
Q ss_pred EEcCCCHHHHHHHHHH-HHHHHHHHHhhhcCCceeeeecCCCCCCccc-ccchhh---hcccCCCC
Q 011289 419 INMPGNPNAVAECMEA-LLPALKHALKQIKGDKREKHPRHVPHSQAVP-VDTWEH---SYKMSSGG 479 (489)
Q Consensus 419 ~~LPG~P~a~~~~~~~-ilp~l~~~~~~~~~~~~~~~~~~~~es~l~~-~~~~~~---~~~~~~~~ 479 (489)
|+|||+|.+++.||+. ++|.+.. .....+.+...+.+||++++ +++... -...|.|.
T Consensus 155 ~~lPGvP~e~~~M~~~~v~p~l~~----~~~~~~~~~~~~~~Es~la~~l~~~~~~~~v~igSyP~ 216 (252)
T PRK03670 155 FVLPGMPREMKAMLEKEVLPRLGE----RKFVQKKFLAEITDESKLAPILEEALERFNVKIHSSPK 216 (252)
T ss_pred EEeCCChHHHHHHHHHHHHHhhcc----CCeEEEEEEeCCCCHHHHHHHHHHHHHHCCceEecCCC
Confidence 9999999999999998 7785532 12223456666899999999 555443 33445554
No 37
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=99.93 E-value=3e-26 Score=253.49 Aligned_cols=170 Identities=24% Similarity=0.368 Sum_probs=156.5
Q ss_pred CCCCccccCCcEEEEEEecccccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEEEeCCccc-------CCCc
Q 011289 234 PATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA-------SGAG 306 (489)
Q Consensus 234 p~g~~~i~~G~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii~~GdEi~-------~G~~ 306 (489)
-.|+..+++|+.+....+..|+++|+.+|+| |++|||+||+||||+. .|++
T Consensus 153 ~~G~~l~~~g~~i~p~~i~~las~g~~~v~v----------------------~~~prv~vi~tG~El~~~~~~~~~g~i 210 (633)
T PRK14498 153 VAGELILPKGTRLTPRDIGALAAGGVAEVPV----------------------YKKPRVGIISTGDELVEPGEPLKPGKI 210 (633)
T ss_pred CCCCEEECCCCCCCHHHHHHHHHCCCCEEEE----------------------ecCcEEEEEecCccccCCCCCCCCCEE
Confidence 3566677889999999999999999999999 9999999999999986 4899
Q ss_pred cCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccccc
Q 011289 307 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETP 386 (489)
Q Consensus 307 ~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~ 386 (489)
.|+|++++.++|+++ |+++..+.+++||++.|+++|+++++ ++|+||||||+|+|.+|+|+++++++++
T Consensus 211 ~dsn~~~l~~~l~~~-----g~~~~~~~~v~Dd~~~i~~~l~~~~~--~~D~iIttGG~s~g~~D~~~~~l~~~g~---- 279 (633)
T PRK14498 211 YDVNSYTLAAAVEEA-----GGEPVRYGIVPDDEEELEAALRKALK--ECDLVLLSGGTSAGAGDVTYRVIEELGE---- 279 (633)
T ss_pred EEChHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHHh--cCCEEEECCCCcCCCcccHHHHHHhcCC----
Confidence 999999999999999 99999999999999999999999986 8999999999999999999999998873
Q ss_pred cHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHH-HHHHHHHHh
Q 011289 387 GLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHALK 444 (489)
Q Consensus 387 g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i-lp~l~~~~~ 444 (489)
+.|++++++||+++ ++|..++++||+|||+|.+++.+|+.+ .|.|.++..
T Consensus 280 -----~~~~~v~~~PG~~~---~~g~~~~~~v~~LPG~p~aa~~~~~~~v~P~l~~l~g 330 (633)
T PRK14498 280 -----VLVHGVAIKPGKPT---ILGVIGGKPVVGLPGYPVSALTIFEEFVAPLLRKLAG 330 (633)
T ss_pred -----EEEeeEeecCCCCE---EEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 46899999999996 889999999999999999999999985 587776554
No 38
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=99.93 E-value=3.6e-25 Score=205.16 Aligned_cols=143 Identities=29% Similarity=0.396 Sum_probs=120.0
Q ss_pred EEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCC
Q 011289 291 SVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPR 370 (489)
Q Consensus 291 ~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~ 370 (489)
+++||+||||++.|++.|+|++++++.|++. |+++.++.+++||.++|+++|+++++ ++|+||||||+|+|+|
T Consensus 1 ~v~Ii~~GdEl~~G~i~d~n~~~l~~~L~~~-----G~~v~~~~~v~Dd~~~I~~~l~~~~~--~~dlVIttGG~G~t~~ 73 (170)
T cd00885 1 TAEIIAIGDELLSGQIVDTNAAFLAKELAEL-----GIEVYRVTVVGDDEDRIAEALRRASE--RADLVITTGGLGPTHD 73 (170)
T ss_pred CEEEEEECccccCCeEEEhHHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHHHh--CCCEEEECCCCCCCCC
Confidence 5899999999999999999999999999999 99999999999999999999999987 8999999999999999
Q ss_pred CChHHHHHHhhccccccHHHHH---Hhc----cccc----CCCcccccc---------ce-eE---ECCEEEEEcCCCHH
Q 011289 371 DVTPEATKELIERETPGLLYVM---MQE----SLKV----TPFAMLSRS---------AA-GI---RGSTLIINMPGNPN 426 (489)
Q Consensus 371 D~T~eav~~~~~~~l~g~~e~~---~~~----~~~~----~p~a~l~r~---------~~-g~---~~~~~v~~LPG~P~ 426 (489)
|+|++|++++++++++++.+.+ +.+ +..+ ..++.++++ .+ |+ .+++.+|.|||+|.
T Consensus 74 D~t~ea~~~~~~~~l~~~~e~~~~i~~~~~~~~~~~~~~~~r~a~~p~ga~~i~N~~G~apg~~~~~~~~~i~~lPG~P~ 153 (170)
T cd00885 74 DLTREAVAKAFGRPLVLDEEALERIEARFARRGREMTEANLKQAMLPEGATLLPNPVGTAPGFSVEHNGKNVFLLPGVPS 153 (170)
T ss_pred ChHHHHHHHHhCCCcccCHHHHHHHHHHHHhcCCccChhhhheecCCCCCEECcCCCCEeeEEEEEeCCeEEEEECCChH
Confidence 9999999999999998877763 211 1111 234444333 11 32 35689999999999
Q ss_pred HHHHHHHH-HHHHHH
Q 011289 427 AVAECMEA-LLPALK 440 (489)
Q Consensus 427 a~~~~~~~-ilp~l~ 440 (489)
+++.||+. +.|++.
T Consensus 154 e~~~m~~~~~~~~l~ 168 (170)
T cd00885 154 EMKPMLEEEVLPRLR 168 (170)
T ss_pred HHHHHHHHHHHHHHh
Confidence 99999995 667653
No 39
>PRK00549 competence damage-inducible protein A; Provisional
Probab=99.93 E-value=2.4e-25 Score=233.44 Aligned_cols=174 Identities=21% Similarity=0.235 Sum_probs=140.8
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCC
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 369 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~ 369 (489)
++++||+||||++.|++.|+|++++++.|++. |+++.++.+|+||.++|.++|+.+.+ ++|+||||||+|+|+
T Consensus 1 m~~~ii~~G~Ell~G~i~DtN~~~L~~~L~~~-----G~~v~~~~~v~Dd~~~I~~~l~~a~~--~~DlVItTGGlGpt~ 73 (414)
T PRK00549 1 MKAEIIAVGTELLLGQIVNTNAQFLSEKLAEL-----GIDVYHQTVVGDNPERLLSALEIAEE--RSDLIITTGGLGPTK 73 (414)
T ss_pred CEEEEEEecccccCCceeEhhHHHHHHHHHHC-----CCeEEEEEEeCCCHHHHHHHHHHhcc--CCCEEEECCCCCCCC
Confidence 58999999999999999999999999999999 99999999999999999999998875 899999999999999
Q ss_pred CCChHHHHHHhhccccccHHHHH-------HhcccccC----CCcccc---------ccce-eE---ECCEEEEEcCCCH
Q 011289 370 RDVTPEATKELIERETPGLLYVM-------MQESLKVT----PFAMLS---------RSAA-GI---RGSTLIINMPGNP 425 (489)
Q Consensus 370 ~D~T~eav~~~~~~~l~g~~e~~-------~~~~~~~~----p~a~l~---------r~~~-g~---~~~~~v~~LPG~P 425 (489)
||+|++|+++++++++....+.+ ..++..+. .++.+| .+.+ |+ .+++.||.|||+|
T Consensus 74 dD~t~ea~a~~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~n~kqA~~P~ga~~l~N~~GtApG~~~~~~~~~i~~lPGvP 153 (414)
T PRK00549 74 DDLTKETVAKFLGRELVLDEEALAKIEDYFAKRGREMTENNRKQALIPEGATVLPNPVGTAPGMIIEVDGKTYIVLPGPP 153 (414)
T ss_pred CccHHHHHHHHhCCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcCCCCCEECcCCCCcCCeEEEEECCEEEEEeCCCc
Confidence 99999999999999886544333 22333332 234432 2333 33 3678999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHhh-hcCCceeeeecCCCCCCccc-ccchh
Q 011289 426 NAVAECMEA-LLPALKHALKQ-IKGDKREKHPRHVPHSQAVP-VDTWE 470 (489)
Q Consensus 426 ~a~~~~~~~-ilp~l~~~~~~-~~~~~~~~~~~~~~es~l~~-~~~~~ 470 (489)
.+++.||+. ++|+|...+.. -....+.++++|++||++++ ++++.
T Consensus 154 ~Em~~m~~~~v~p~l~~~~~~~~~~~~~~l~~~gi~Es~l~~~L~~l~ 201 (414)
T PRK00549 154 SELKPMFEEYVVPYLSSAKGTGEVLYSRVLRFFGIGESQLATTLRDLI 201 (414)
T ss_pred HHHHHHHHHHhHHHHHhhcCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 999999998 67977653222 12234567899999999999 67764
No 40
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=99.93 E-value=5.9e-25 Score=220.53 Aligned_cols=138 Identities=20% Similarity=0.354 Sum_probs=122.2
Q ss_pred CC--eEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 8 TP--TIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 8 ~p--rV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
+| +++||.+|||+. .|+++|+|+++|.++|+++|+++..+.+++||++.|+++|++++.+++|+||||||
T Consensus 153 ~~~~~~aIltvsde~~--------~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGG 224 (312)
T PRK03604 153 RPRTSAAVLVLSDSIA--------AGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGG 224 (312)
T ss_pred CCccEEEEEEECCcCC--------CCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCC
Confidence 55 677999999986 89999999999999999999999999999999999999999986446999999999
Q ss_pred CcCCCCCchHHHHHhcCCeEEeeeee---------cCCC---ceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHH
Q 011289 86 VSMGDKDFVKPLLQKKGTIYFNKVCM---------KPGK---PLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHL 153 (489)
Q Consensus 86 ~s~G~~D~~~~~l~~~G~~~f~~v~~---------kPGk---p~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~ 153 (489)
+|+|++|+++++++++|+..|+|+++ +||+ |..+|..+ +++||+|||||.|+..+|++
T Consensus 225 tg~g~~D~tpeAl~~lg~~~~~Gvae~ir~~g~~~~Pga~lsr~~~G~~~----------~tlI~~LPG~P~aa~~~~~~ 294 (312)
T PRK03604 225 TGLGPRDVTPEALAPLLERRLPGIAEALRSWGQGRTPTAMLSRLVAGMIG----------NSLVVALPGSPGGASDALAV 294 (312)
T ss_pred CCCCCCccHHHHHHHhcCccccchHHHHHhcccCCCCCcccCcceEEEEC----------CEEEEECCCCHHHHHHHHHH
Confidence 99999999999999999766666664 7997 56778775 49999999999999999987
Q ss_pred HHHHHHHHhcC
Q 011289 154 YIVPAIRHLSG 164 (489)
Q Consensus 154 ~v~P~L~~l~G 164 (489)
| .|.|.++.-
T Consensus 295 l-lp~l~h~~~ 304 (312)
T PRK03604 295 L-LPALFHAFA 304 (312)
T ss_pred H-HHHHHHHHH
Confidence 6 888877653
No 41
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=99.92 E-value=2.7e-25 Score=244.10 Aligned_cols=172 Identities=21% Similarity=0.318 Sum_probs=153.8
Q ss_pred cCCCCccccCCcEEEEEEecccccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEEEeCCccc--------CC
Q 011289 233 LPATGSVISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA--------SG 304 (489)
Q Consensus 233 ip~g~~~i~~G~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii~~GdEi~--------~G 304 (489)
+.+|+..+++|+.+....+..|++.|+.+|+| |++|||+||+||||+. .|
T Consensus 147 ~~~G~~ll~~G~~l~p~~i~lLas~Gi~~V~V----------------------~~kprV~visTGdELv~~g~~~~~~g 204 (659)
T PLN02699 147 IEKDAKVLKAGERLGASEIGLLATVGVTMVKV----------------------YPRPTVAILSTGDELVEPTTGTLGRG 204 (659)
T ss_pred cCCCCEEECCcCCCCHHHHHHHHHCCCCeEEe----------------------ecCCeEEEEeCCcccccCCCCCCCCC
Confidence 44566778899999999999999999999999 9999999999999996 58
Q ss_pred CccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccc
Q 011289 305 AGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERE 384 (489)
Q Consensus 305 ~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~ 384 (489)
++.|+|+++++++|+++ |+++..+.+++||.++|+++|+++++ .++|+||||||+|+|.+|++++++++.++
T Consensus 205 ~i~dsN~~~L~a~l~~~-----G~~v~~~~iv~Dd~~~i~~~l~~a~~-~~~DlvItTGGts~G~~D~v~~~l~~~G~-- 276 (659)
T PLN02699 205 QIRDSNRAMLLAAAIQQ-----QCKVVDLGIARDDEEELERILDEAIS-SGVDILLTSGGVSMGDRDFVKPLLEKRGT-- 276 (659)
T ss_pred cEEeChHHHHHHHHHHC-----CCEEEEEEEeCCCHHHHHHHHHHhhc-CCCCEEEECCCCCCCCCccHHHHHHhcCc--
Confidence 99999999999999999 99999999999999999999999874 36999999999999999999999988763
Q ss_pred cccHHHHHHhcccccCCCccccccceeEEC---------CEEEEEcCCCHHHHHHHHHHH-HHHHHHHHh
Q 011289 385 TPGLLYVMMQESLKVTPFAMLSRSAAGIRG---------STLIINMPGNPNAVAECMEAL-LPALKHALK 444 (489)
Q Consensus 385 l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~---------~~~v~~LPG~P~a~~~~~~~i-lp~l~~~~~ 444 (489)
+.|++++|+||+++ +++.++ +++||+|||+|.++..+|+.| .|.|.++..
T Consensus 277 -------i~f~gv~~kPGkp~---~~a~~~~~~~~g~~~~~~v~gLPGnP~sa~~~f~~~v~P~l~~l~G 336 (659)
T PLN02699 277 -------VYFSKVLMKPGKPL---TFAEIDAKSAPSNSKKMLAFGLPGNPVSCLVCFNLFVVPAIRYLAG 336 (659)
T ss_pred -------ceEEEEEecCCCce---eeEEecccccccccCCEEEEECCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 46899999999997 556654 469999999999999999986 587766543
No 42
>KOG2371 consensus Molybdopterin biosynthesis protein [Coenzyme transport and metabolism]
Probab=99.92 E-value=6.5e-25 Score=216.55 Aligned_cols=216 Identities=35% Similarity=0.509 Sum_probs=161.2
Q ss_pred ccCCcEEEEEEecccccCCCcccccccccccccCCCCCCcccccCCCCcceEEEEEEeCCccc------CCCccCCchHH
Q 011289 240 ISAGTLVSAIVISDISSTDNSKIDTSLVLGSTLQGSKPKEVTTDCSGYTEFSVAILTVSDTVA------SGAGPDRSGPR 313 (489)
Q Consensus 240 i~~G~~V~v~ll~~l~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ii~~GdEi~------~G~~~D~n~~~ 313 (489)
+++|..++.-.+..+...|..++++ |++++++|++||+|+. .|.+.|.|...
T Consensus 162 ~k~~~~l~p~si~~l~~~gi~~v~i----------------------ykkpvVtV~sTgSel~~~d~~~pg~v~~~n~s~ 219 (411)
T KOG2371|consen 162 LKKGHHLDPSSIGLLHALGIVQVEI----------------------YKKPVVTVSSTGSELNSPDRSGPGMVRDSNRSQ 219 (411)
T ss_pred ccccccCCcccceehhhccccccce----------------------ecccEEEEeeccccccCccccCCceeeecchHH
Confidence 3455566666677788888888888 9999999999999985 47899999999
Q ss_pred HHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccccccHHHHHH
Q 011289 314 AVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMM 393 (489)
Q Consensus 314 l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~g~~e~~~ 393 (489)
+.+.+.+. |+......+++||.++|+++|+++++ .+|+|||+||+|++++|+|++|+. .++.+++ +...+.
T Consensus 220 l~~l~~~~-----Gf~~i~~gvv~D~~~~i~e~L~e~~~--~aDvIlTtGGvsm~~~D~~~~a~~-~l~f~i~-~g~V~m 290 (411)
T KOG2371|consen 220 LLELFQEH-----GFTAIDAGVVPDDVTRIKEKLREASS--FADVILTTGGVSMGPRDVTKEALK-VLEFEIH-LGRVDM 290 (411)
T ss_pred HHHHHHHh-----CccccccccccCcHHHHHHHHHHhhh--hccEEEecCCccccchhhhhhHhh-hhheeee-cceeec
Confidence 99999999 99999999999999999999999997 899999999999999999999999 6665543 222112
Q ss_pred hcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHH-HHHHHHHHHhhhcCC---ceeeeecCCC-CCCcccccc
Q 011289 394 QESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEA-LLPALKHALKQIKGD---KREKHPRHVP-HSQAVPVDT 468 (489)
Q Consensus 394 ~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~-ilp~l~~~~~~~~~~---~~~~~~~~~~-es~l~~~~~ 468 (489)
.-|+++.+.+.++| +|+.+.++||+|||||..++..+.. ++|.|+++..+++.. .+.-++..+. ++...+. +
T Consensus 291 kpgl~~TsfA~l~~--~gir~~k~i~~lPGnpvsAvv~c~lf~~PaLr~m~g~~~~~~ld~r~e~~r~i~~~~~~l~~-~ 367 (411)
T KOG2371|consen 291 KPGLPITSFATLSR--AGIRGPKLIFNLPGNPVSAVVECNLFLLPALRHMEGQLKETSLDDRPEHVRAISHETEFLPA-R 367 (411)
T ss_pred cCCCcccceeeeec--cccccceEEEECCCCcchhhhhhHHHHHHHHHHHhccccccccCcchhhccccccccccCCc-c
Confidence 22333333444434 6778889999999998888876666 579999998887774 3333333333 2222222 4
Q ss_pred hhhhc--ccCCCCCCC-CCccCCC
Q 011289 469 WEHSY--KMSSGGGTE-PSCSCSH 489 (489)
Q Consensus 469 ~~~~~--~~~~~~~~~-~~~~~~~ 489 (489)
|.+.+ ..+++-|.| --|+|.|
T Consensus 368 ~a~s~gNqiss~l~~~~~a~~l~~ 391 (411)
T KOG2371|consen 368 WAQSTGNQISSRLGSEVGAGVLLI 391 (411)
T ss_pred hhhhccccccccccchhhccceee
Confidence 54433 455665554 4577764
No 43
>PRK01215 competence damage-inducible protein A; Provisional
Probab=99.91 E-value=7.5e-24 Score=209.15 Aligned_cols=137 Identities=22% Similarity=0.342 Sum_probs=122.3
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
.+|||+||+|||||+ .|+++|+|+++|++.|+++|+++....+++||++.|+++|+++++ .+|+||||||+
T Consensus 2 ~~~~v~Ii~~GdEll--------~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~-~~DlVIttGG~ 72 (264)
T PRK01215 2 DKWFAWIITIGNELL--------IGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAID-RADVVVSTGGL 72 (264)
T ss_pred CCCEEEEEEEChhcc--------CCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhc-CCCEEEEeCCC
Confidence 379999999999998 799999999999999999999999999999999999999999997 49999999999
Q ss_pred cCCCCCchHHHHHhc-C-CeEEe-----------------------eeeecC-C----------CceeeEEEccCCCCcc
Q 011289 87 SMGDKDFVKPLLQKK-G-TIYFN-----------------------KVCMKP-G----------KPLTFAEINIKPTDDV 130 (489)
Q Consensus 87 s~G~~D~~~~~l~~~-G-~~~f~-----------------------~v~~kP-G----------kp~~~a~~~~~~~~~~ 130 (489)
|+|++|+|++++.++ | ++.+| +.++.| | .|-.+...
T Consensus 73 g~t~dD~t~eaia~~~g~~l~~~~e~~~~l~~~~~~~~~~~~~~~~k~A~~P~ga~~l~N~~Gtapg~~~~~-------- 144 (264)
T PRK01215 73 GPTYDDKTNEGFAKALGVELELNEDALRMILEKYEKRGIPLTPERKKMAMMPPGAVPLENPVGTAPGILIEH-------- 144 (264)
T ss_pred cCChhhhHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCCCChhHHheeeCCCCCEecCCCCCcCCeEEEEE--------
Confidence 999999999999996 6 77777 688888 5 23333332
Q ss_pred ccccEEEEEcCCChHHHHHHHHHHHHHHHHHh
Q 011289 131 MVNKILAFGLPGNPVSCIVCFHLYIVPAIRHL 162 (489)
Q Consensus 131 ~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~~l 162 (489)
++++||+|||+|.++..+|+.++.|+|+++
T Consensus 145 --~~~~i~~LPG~P~e~~~m~~~~v~p~l~~~ 174 (264)
T PRK01215 145 --GGKDIVALPGVPREMEAIFENFVEPLLKNR 174 (264)
T ss_pred --CCEEEEEeCCChHHHHHHHHHHHHHHHhcc
Confidence 258999999999999999999999999775
No 44
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=99.90 E-value=1.1e-23 Score=188.21 Aligned_cols=127 Identities=36% Similarity=0.559 Sum_probs=110.0
Q ss_pred EEEEeCCcccCC-CccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCC
Q 011289 293 AILTVSDTVASG-AGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRD 371 (489)
Q Consensus 293 ~Ii~~GdEi~~G-~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D 371 (489)
+||++|||+..+ ++.|+|+++++++|+++ |+++..+.+++||+++|+++|+++++ ++|+||||||+|++++|
T Consensus 1 ~vi~~GdEi~~~~~~~d~~~~~l~~~l~~~-----G~~~~~~~~v~Dd~~~I~~~l~~~~~--~~dliittGG~g~g~~D 73 (135)
T smart00852 1 AIISTGDELLSGGQIYDSNGPALAELLTEL-----GIEVTRYVIVPDDKEAIKEALREALE--RADLVITTGGTGPGPDD 73 (135)
T ss_pred CEEEEechhhcCCCcccCcHHHHHHHHHHC-----CCeEEEEEEeCCCHHHHHHHHHHHHh--CCCEEEEcCCCCCCCCc
Confidence 488999999987 78899999999999999 99999999999999999999999987 79999999999999999
Q ss_pred ChHHHHHHhhccccccHHHHHHhcccccCCCcccc------ccceeEECCEEEEEcCCCHHHHHHHHHH
Q 011289 372 VTPEATKELIERETPGLLYVMMQESLKVTPFAMLS------RSAAGIRGSTLIINMPGNPNAVAECMEA 434 (489)
Q Consensus 372 ~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~------r~~~g~~~~~~v~~LPG~P~a~~~~~~~ 434 (489)
+|+++++++++++++ +++++++||++.. +...|.. +++||+|||+|.++..+|+.
T Consensus 74 ~t~~~l~~~~~~~~~-------~~~~~~~Pg~~~~~~~~~~~~~~g~~-~~~i~~LPG~P~~~~~~~~~ 134 (135)
T smart00852 74 VTPEAVAEALGKELP-------GFGEAMRPGGAPTVLANLSGTAPGFR-GKLVFGLPGSPVAARAMLEL 134 (135)
T ss_pred CcHHHHHHHhCCcCC-------ChhhhhcccCCccccccccCcCCeEe-CcEEEECCCCHHHHHHHHHh
Confidence 999999999876644 4456677776642 3334443 46999999999999999874
No 45
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=99.87 E-value=1.1e-21 Score=205.02 Aligned_cols=135 Identities=27% Similarity=0.346 Sum_probs=115.2
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
.+|+||+|||||+ .|+|+|+|+++|+++|+++|+++..+.+++||++.|.++|+++++ .+|+||||||+|+
T Consensus 1 m~v~Ii~tGdEll--------~G~i~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~-~~DlVIttGGlgp 71 (413)
T TIGR00200 1 LKAEIISVGDELL--------LGQIVNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASE-RADVLIFNGGLGP 71 (413)
T ss_pred CEEEEEEECcccc--------CCcEEEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhc-CCCEEEEcCCCCC
Confidence 4799999999998 799999999999999999999999999999999999999999987 5999999999999
Q ss_pred CCCCchHHHHHhc-C-C-------------------------------------eEEeeeeecCCCceeeEEEccCCCCc
Q 011289 89 GDKDFVKPLLQKK-G-T-------------------------------------IYFNKVCMKPGKPLTFAEINIKPTDD 129 (489)
Q Consensus 89 G~~D~~~~~l~~~-G-~-------------------------------------~~f~~v~~kPGkp~~~a~~~~~~~~~ 129 (489)
+++|+|++++.++ | + ++++.+.+.||. +...+
T Consensus 72 t~dD~t~eava~~~g~~l~~~~~~~~~i~~~~~~~g~~~~~~n~kqA~~p~ga~~l~N~~G~APG~---~~~~~------ 142 (413)
T TIGR00200 72 TSDDLTAETIATAKGEPLVLNEAWLKEIERYFHETGRVMAPNNRKQALLPAGAEFLANPVGTAPGM---FAVQL------ 142 (413)
T ss_pred CCcccHHHHHHHHhCCCcEECHHHHHHHHHHHHhcCCCCChHHHHhcCCCCCCEECCCCCCCCCee---EEEec------
Confidence 9999999999654 2 3 333444445553 22222
Q ss_pred cccccEEEEEcCCChHHHHHHHHHHHHHHHHHhcC
Q 011289 130 VMVNKILAFGLPGNPVSCIVCFHLYIVPAIRHLSG 164 (489)
Q Consensus 130 ~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~~l~G 164 (489)
+++.+|+|||+|.++..+|+.++.|.|+++.+
T Consensus 143 ---~~~~i~~LPG~P~e~~~m~~~~v~p~l~~~~~ 174 (413)
T TIGR00200 143 ---NRCLMLFTPGVPSEFRVMVEHEALPRLRERFS 174 (413)
T ss_pred ---CCEEEEEeCCCcHHHHHHHHHHhhHHHHHhcC
Confidence 24899999999999999999999999987654
No 46
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=99.85 E-value=8.3e-21 Score=178.69 Aligned_cols=140 Identities=20% Similarity=0.244 Sum_probs=111.4
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeE--EEEEeecCCHHHHHHHHHHHHh-cCCCEEEEe
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKL--IDLGIVRDDEEELEKTLDNAFS-AGIDILLTS 83 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~--~~~~~v~Dd~~~i~~~l~~~~~-~~~Dlvitt 83 (489)
.+++++||+++||+. .|+++|+|+++|.++|+++|++. ..+.+++||++.|+++|+++++ +++|+||||
T Consensus 2 ~~~~~aIItvSd~~~--------~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITT 73 (193)
T PRK09417 2 DTLKIGLVSISDRAS--------SGVYEDKGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTT 73 (193)
T ss_pred CCcEEEEEEEcCcCC--------CCceeechHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEEC
Confidence 368999999999987 78999999999999999997542 3559999999999999999985 359999999
Q ss_pred CCCcCCCCCchHHHHHhcC-C------eEEeeeeecCCCceeeE--EEccCCCCccccccEEEEEcCCChHHHHHHHH--
Q 011289 84 GGVSMGDKDFVKPLLQKKG-T------IYFNKVCMKPGKPLTFA--EINIKPTDDVMVNKILAFGLPGNPVSCIVCFH-- 152 (489)
Q Consensus 84 GG~s~G~~D~~~~~l~~~G-~------~~f~~v~~kPGkp~~~a--~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~-- 152 (489)
||+|+|++|+|++++++++ + ..|+...++.+...++. ..+ ..++++||+|||+|.++..+|+
T Consensus 74 GGtg~g~rDvTpeAv~~l~~keipG~~e~~r~~s~~~~~~a~LSRa~ag-------v~~~tlI~nLPGSp~a~~~~le~i 146 (193)
T PRK09417 74 GGTGPARRDVTPEATLAVADKEMPGFGEQMRQISLKFVPTAILSRQVAV-------IRGQSLIINLPGQPKSIKETLEGL 146 (193)
T ss_pred CCCCCCCCCcHHHHHHHHhCCcCCcHHHHHHHHhcccccHHHhhcceeE-------EeCCEEEEECCCCHHHHHHHHHhc
Confidence 9999999999999999975 2 33555555543322221 111 1136999999999999999998
Q ss_pred ----------HHHHHHHHHh
Q 011289 153 ----------LYIVPAIRHL 162 (489)
Q Consensus 153 ----------~~v~P~L~~l 162 (489)
. +.|+|.+.
T Consensus 147 ~~~~~~~~~~~-i~~~~~h~ 165 (193)
T PRK09417 147 KDADGNVVVPG-IFAAVPYC 165 (193)
T ss_pred cccccchhHHH-HHHHHHHH
Confidence 4 57777663
No 47
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=99.84 E-value=3.2e-20 Score=172.09 Aligned_cols=139 Identities=26% Similarity=0.431 Sum_probs=112.3
Q ss_pred eEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Q 011289 10 TIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMG 89 (489)
Q Consensus 10 rV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G 89 (489)
+|+||+|||||+ .|+++|+|+++|+++|+++|+++..+.+++||++.|+++|+++++ .+|+||||||+|++
T Consensus 1 ~v~Ii~~GdEl~--------~G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~-~~dlVIttGG~G~t 71 (170)
T cd00885 1 TAEIIAIGDELL--------SGQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASE-RADLVITTGGLGPT 71 (170)
T ss_pred CEEEEEECcccc--------CCeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh-CCCEEEECCCCCCC
Confidence 589999999998 699999999999999999999999999999999999999999987 59999999999999
Q ss_pred CCCchHHHHHhc-C-CeEEeeee-----------------------ecCCCceeeEEEccCCCCc---c--ccccEEEEE
Q 011289 90 DKDFVKPLLQKK-G-TIYFNKVC-----------------------MKPGKPLTFAEINIKPTDD---V--MVNKILAFG 139 (489)
Q Consensus 90 ~~D~~~~~l~~~-G-~~~f~~v~-----------------------~kPGkp~~~a~~~~~~~~~---~--~~~~~~v~~ 139 (489)
++|+|++++.++ | ++.++.-. +-|-....+ .|..++ + ..+++.++.
T Consensus 72 ~~D~t~ea~~~~~~~~l~~~~e~~~~i~~~~~~~~~~~~~~~~r~a~~p~ga~~i----~N~~G~apg~~~~~~~~~i~~ 147 (170)
T cd00885 72 HDDLTREAVAKAFGRPLVLDEEALERIEARFARRGREMTEANLKQAMLPEGATLL----PNPVGTAPGFSVEHNGKNVFL 147 (170)
T ss_pred CCChHHHHHHHHhCCCcccCHHHHHHHHHHHHhcCCccChhhhheecCCCCCEEC----cCCCCEeeEEEEEeCCeEEEE
Confidence 999999999984 5 55553222 222221111 111221 1 234578999
Q ss_pred cCCChHHHHHHHHHHHHHHHHH
Q 011289 140 LPGNPVSCIVCFHLYIVPAIRH 161 (489)
Q Consensus 140 LPGnP~aa~~~~~~~v~P~L~~ 161 (489)
|||.|..+..+|+..+.|.|++
T Consensus 148 lPG~P~e~~~m~~~~~~~~l~~ 169 (170)
T cd00885 148 LPGVPSEMKPMLEEEVLPRLRE 169 (170)
T ss_pred ECCChHHHHHHHHHHHHHHHhc
Confidence 9999999999999888998753
No 48
>PRK03673 hypothetical protein; Provisional
Probab=99.82 E-value=2.2e-19 Score=186.28 Aligned_cols=142 Identities=27% Similarity=0.352 Sum_probs=117.4
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
|||+||+|||||+ .|+|+|+|+++|+++|++.|+++....+++||++.|.++|+++++ .+|+||||||+|+
T Consensus 2 ~~v~Iis~GdEll--------~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~-~~DlVI~tGGlGp 72 (396)
T PRK03673 2 LRVEMLSTGDEVL--------HGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQ-HADVLIVNGGLGP 72 (396)
T ss_pred CEEEEEEecccCC--------CCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhc-cCCEEEEcCCCCC
Confidence 7999999999998 699999999999999999999999999999999999999999987 4999999999999
Q ss_pred CCCCchHHHHHh-cC-CeEEe-----------------------eeeecCCCceeeEEEccCCCCc---c--ccccEEEE
Q 011289 89 GDKDFVKPLLQK-KG-TIYFN-----------------------KVCMKPGKPLTFAEINIKPTDD---V--MVNKILAF 138 (489)
Q Consensus 89 G~~D~~~~~l~~-~G-~~~f~-----------------------~v~~kPGkp~~~a~~~~~~~~~---~--~~~~~~v~ 138 (489)
|++|+|++++.+ +| ++.+| +.++-|-....+ .|+.+. + ..+++.+|
T Consensus 73 t~dD~t~~avA~a~g~~L~~d~e~~~~i~~~f~~~~~~m~~~n~kQA~~P~ga~~l----~N~~GtApG~~~~~~~~~i~ 148 (396)
T PRK03673 73 TSDDLSALAAATAAGEGLVLHEEWLAEMERFFAERGRVMAPSNRKQAELPASAEMI----DNPVGTACGFALQLNRCLMF 148 (396)
T ss_pred CCcccHHHHHHHHcCCCceeCHHHHHHHHHHHHhcCCCCChhHHhhccCCCCCeec----cCCCccCCcEEEEECCEEEE
Confidence 999999999987 56 55542 223333332222 222222 1 23457899
Q ss_pred EcCCChHHHHHHHHHHHHHHHHHhc
Q 011289 139 GLPGNPVSCIVCFHLYIVPAIRHLS 163 (489)
Q Consensus 139 ~LPGnP~aa~~~~~~~v~P~L~~l~ 163 (489)
.|||.|..+..+|+..+.|.|++..
T Consensus 149 ~LPGvP~Emk~M~~~~v~p~L~~~~ 173 (396)
T PRK03673 149 FTPGVPSEFKVMVEQEILPRLRERF 173 (396)
T ss_pred EECCChHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998754
No 49
>PRK00549 competence damage-inducible protein A; Provisional
Probab=99.79 E-value=1.1e-18 Score=183.25 Aligned_cols=141 Identities=23% Similarity=0.376 Sum_probs=115.5
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
.+++||+|||||+ .|+++|+|+++|+++|+++|+++....+++||++.|+++|+++.+ ++|+||||||+|+
T Consensus 1 m~~~ii~~G~Ell--------~G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~-~~DlVItTGGlGp 71 (414)
T PRK00549 1 MKAEIIAVGTELL--------LGQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEE-RSDLIITTGGLGP 71 (414)
T ss_pred CEEEEEEeccccc--------CCceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhcc-CCCEEEECCCCCC
Confidence 4799999999998 799999999999999999999999999999999999999999876 5999999999999
Q ss_pred CCCCchHHHHHh-cC-CeEEeee-----------------------eecCCCceeeEEEccCCCCc-----cccccEEEE
Q 011289 89 GDKDFVKPLLQK-KG-TIYFNKV-----------------------CMKPGKPLTFAEINIKPTDD-----VMVNKILAF 138 (489)
Q Consensus 89 G~~D~~~~~l~~-~G-~~~f~~v-----------------------~~kPGkp~~~a~~~~~~~~~-----~~~~~~~v~ 138 (489)
+++|+|++++.+ +| ++.++.- ++-|-....+ .|+.+. ...+++.+|
T Consensus 72 t~dD~t~ea~a~~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~n~kqA~~P~ga~~l----~N~~GtApG~~~~~~~~~i~ 147 (414)
T PRK00549 72 TKDDLTKETVAKFLGRELVLDEEALAKIEDYFAKRGREMTENNRKQALIPEGATVL----PNPVGTAPGMIIEVDGKTYI 147 (414)
T ss_pred CCCccHHHHHHHHhCCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcCCCCCEEC----cCCCCcCCeEEEEECCEEEE
Confidence 999999999998 66 5554322 2223222221 122221 123457899
Q ss_pred EcCCChHHHHHHHHHHHHHHHHHh
Q 011289 139 GLPGNPVSCIVCFHLYIVPAIRHL 162 (489)
Q Consensus 139 ~LPGnP~aa~~~~~~~v~P~L~~l 162 (489)
.|||.|..+..+|+..+.|.|++.
T Consensus 148 ~lPGvP~Em~~m~~~~v~p~l~~~ 171 (414)
T PRK00549 148 VLPGPPSELKPMFEEYVVPYLSSA 171 (414)
T ss_pred EeCCCcHHHHHHHHHHhHHHHHhh
Confidence 999999999999999999999764
No 50
>PRK03670 competence damage-inducible protein A; Provisional
Probab=99.75 E-value=1.1e-17 Score=164.03 Aligned_cols=139 Identities=21% Similarity=0.298 Sum_probs=109.3
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
.+++||+|||||+ .|+++|+|+++|+++|.++|+++....+++||++.|.++|++++++.+|+||||||+|+
T Consensus 1 m~a~Ii~iGdEll--------~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGp 72 (252)
T PRK03670 1 MFAEIITVGDELL--------TGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGP 72 (252)
T ss_pred CEEEEEEeCCcCc--------CCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccC
Confidence 4789999999998 79999999999999999999999999999999999999999987644899999999999
Q ss_pred CCCCchHHHHHhc-C-CeEEee------------------------------eeecCCCceeeEEEccCCCCc---c--c
Q 011289 89 GDKDFVKPLLQKK-G-TIYFNK------------------------------VCMKPGKPLTFAEINIKPTDD---V--M 131 (489)
Q Consensus 89 G~~D~~~~~l~~~-G-~~~f~~------------------------------v~~kPGkp~~~a~~~~~~~~~---~--~ 131 (489)
+.+|+|++++.+. | ++.+|. .++-|-.. .+-.|+.+. + .
T Consensus 73 t~dD~T~eava~a~g~~l~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~kmA~~P~ga----~~l~N~~g~ApG~~~~ 148 (252)
T PRK03670 73 THDDVTMLAVAEALGRELVLCEDCLERIKEFYEELYKKGLIDDPTLNEARKKMAYLPEGA----EPLENTEGAAPGAYIE 148 (252)
T ss_pred CCCCchHHHHHHHhCCCCcCCHHHHHHHHHHHHHhcccccccccccChHHHheeCCCCCC----EECCCCCCcCceEEEE
Confidence 9999999999885 4 444321 12222221 111112111 1 2
Q ss_pred cccEEEEEcCCChHHHHHHHHHHHHHHH
Q 011289 132 VNKILAFGLPGNPVSCIVCFHLYIVPAI 159 (489)
Q Consensus 132 ~~~~~v~~LPGnP~aa~~~~~~~v~P~L 159 (489)
.+++.++.|||.|.-+..+|+..+.|.|
T Consensus 149 ~~~~~v~~lPGvP~e~~~M~~~~v~p~l 176 (252)
T PRK03670 149 HKGTKIFVLPGMPREMKAMLEKEVLPRL 176 (252)
T ss_pred ECCeEEEEeCCChHHHHHHHHHHHHHhh
Confidence 2346899999999999999998777755
No 51
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=99.74 E-value=2.5e-17 Score=160.12 Aligned_cols=141 Identities=23% Similarity=0.374 Sum_probs=116.1
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
.+++||++||||+ .|+|.|+|+.+|+..|.+.|+++....+|+||+++|.++|+.+.++ +|+||+|||.|+
T Consensus 2 ~~a~iI~vG~ElL--------~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGGLGP 72 (255)
T COG1058 2 MKAEIIAVGDELL--------SGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASER-ADVVITTGGLGP 72 (255)
T ss_pred ceEEEEEEcccee--------cCceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEECCCcCC
Confidence 4789999999999 8999999999999999999999999999999999999999999986 999999999999
Q ss_pred CCCCchHHHHHh-cC-CeEEe-----------------------eeeecCCCceeeEEEccCCCCc---c--ccccEEEE
Q 011289 89 GDKDFVKPLLQK-KG-TIYFN-----------------------KVCMKPGKPLTFAEINIKPTDD---V--MVNKILAF 138 (489)
Q Consensus 89 G~~D~~~~~l~~-~G-~~~f~-----------------------~v~~kPGkp~~~a~~~~~~~~~---~--~~~~~~v~ 138 (489)
.++|+|.+++.+ +| ++..| +.++-|-....+ .|+.+. + ..+++.++
T Consensus 73 T~DDiT~e~vAka~g~~lv~~~~al~~i~~~~~~r~~~~~~~~~K~A~~P~Ga~~l----~NpvG~APG~~v~~~~~~v~ 148 (255)
T COG1058 73 THDDLTAEAVAKALGRPLVLDEEALAMIEEKYAKRGREMTEANRKQAMLPEGAEVL----DNPVGTAPGFVVEGNGKNVY 148 (255)
T ss_pred CccHhHHHHHHHHhCCCcccCHHHHHHHHHHHHhcCCCCChhhhhhccCCCCCEeC----CCCCCCCCeeEEecCCeEEE
Confidence 999999999987 56 44432 233333322111 122221 1 33468899
Q ss_pred EcCCChHHHHHHHHHHHHHHHHHh
Q 011289 139 GLPGNPVSCIVCFHLYIVPAIRHL 162 (489)
Q Consensus 139 ~LPGnP~aa~~~~~~~v~P~L~~l 162 (489)
.|||.|..+..+|+.++.|++...
T Consensus 149 ~lPGvP~Em~~M~e~~~~~~l~~~ 172 (255)
T COG1058 149 VLPGVPSEMKPMFENVLLPLLTGR 172 (255)
T ss_pred EeCCCCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999988654
No 52
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=99.72 E-value=3.6e-17 Score=148.99 Aligned_cols=143 Identities=22% Similarity=0.375 Sum_probs=117.7
Q ss_pred eeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 6 YRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 6 ~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
.+..+++|+++.|-.. .|.-.|..++.|.++|++.|+++..+.++|||.+.|.+.+.+++++.+|+||||||
T Consensus 5 ~~~~~~~VvTVSd~r~--------~~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGG 76 (169)
T COG0521 5 PKPLRIAVVTVSDRRS--------TGEYEDKSGPLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGG 76 (169)
T ss_pred ccceeEEEEEEecccc--------cCCccccchhHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 3456799999998765 23333999999999999999999999999999999999999998744999999999
Q ss_pred CcCCCCCchHHHHHhc------C-CeEEeeeeecC-CCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHH
Q 011289 86 VSMGDKDFVKPLLQKK------G-TIYFNKVCMKP-GKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVP 157 (489)
Q Consensus 86 ~s~G~~D~~~~~l~~~------G-~~~f~~v~~kP-Gkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P 157 (489)
||++++|.|++|++.+ | ..+|+.+.+.= |...++.+-- ++ -.++++||+|||+|.|+..+++.++.|
T Consensus 77 TG~t~RDvTpEA~~~~~dKeipGFgE~fR~~S~~~~g~~AiLSRa~----aG-v~~~tlIf~LPGSp~Avr~~l~~iI~p 151 (169)
T COG0521 77 TGITPRDVTPEATRPLFDKEIPGFGELFRRLSLEEIGPTAILSRAV----AG-VRNGTLIFNLPGSPGAVRDALEGIILP 151 (169)
T ss_pred ccCCCCcCCHHHHHHHHhccCCcHHHHHHHhhhhcCCCcEEEeeee----eE-EeCCeEEEEcCCChhhHHHHHHHHHHH
Confidence 9999999999999986 3 45688888877 6655554321 11 123599999999999999999988899
Q ss_pred HHHH
Q 011289 158 AIRH 161 (489)
Q Consensus 158 ~L~~ 161 (489)
.|.+
T Consensus 152 ~l~~ 155 (169)
T COG0521 152 ELDY 155 (169)
T ss_pred hccc
Confidence 9874
No 53
>PF03454 MoeA_C: MoeA C-terminal region (domain IV); InterPro: IPR005111 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this domain is uncertain. The structure of this domain is known [] and forms an incomplete beta barrel.; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1T3E_A 2FU3_A 2FTS_A 1WU2_A 1XI8_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A 2NQM_B ....
Probab=99.42 E-value=3.6e-13 Score=106.98 Aligned_cols=72 Identities=35% Similarity=0.484 Sum_probs=62.0
Q ss_pred EEEEcCCCCCCCCCceEEEEEEEEeeCCCCCccceEEEecCCCCchhhhhhhcCCEEEEcCCCCccccCCcEEEEEEe
Q 011289 174 PARICQPLKTDRVRPEFHRAILRWKANDGSGSSGFVAESTGHQMSSRLLSMKSANALLELPATGSVISAGTLVSAIVI 251 (489)
Q Consensus 174 ~a~l~~~~~~~~~~~~f~~~~l~~~~~~g~~~~~~~~~p~~~~~s~~l~sl~~an~l~~ip~g~~~i~~G~~V~v~ll 251 (489)
+|+|+.++++++++++|+|+++.. ++|. +++.|++.|+|+++++|++||||++||++.+.+++|+.|++++|
T Consensus 1 ka~l~~~~~~~~~r~~~~r~~l~~--~~g~----~~~~p~~~~~S~~l~sl~~an~l~~ip~~~~~~~~G~~V~v~ll 72 (72)
T PF03454_consen 1 KARLAEDIKKKPGRTEFLRVRLER--EDGE----YVVEPLGSQGSGMLSSLARANGLIVIPEGVEGLEAGEEVEVILL 72 (72)
T ss_dssp EEEESS-EE-BTTSEEEEEEEEET--TTSS----TEEEE-SSSSTSHTHHHHHBSEEEEEETT-SEE-TTEEEEEEE-
T ss_pred CcEeCCcccCCCCCeEEEEEEEEE--eCCE----EEEEECCCCCCHHHHhHhhCCEEEEeCCCCCccCCCCEEEEEEC
Confidence 588999999999999999999984 6777 89999999999999999999999999999999999999999986
No 54
>KOG2644 consensus 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=96.40 E-value=0.00045 Score=68.06 Aligned_cols=86 Identities=24% Similarity=0.405 Sum_probs=77.8
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCC
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 369 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~ 369 (489)
++.++..++..+..|.+.|+|.......+... |.++.+..+++||...|.+...++.. +.+.|+++||+++++
T Consensus 5 ~~s~~~li~~~~~~~~~~~t~~sf~~~~~~~~-----~~~~~s~~~~~~d~~q~~~~~~~l~~--~~e~i~~a~~i~~~~ 77 (282)
T KOG2644|consen 5 YNSAIFLINRFLANGSTEDTNSSFKGLHLSTS-----GVQLKSINIVDDDAAQILDEVLRLTR--QLEFILKAGGIGPTH 77 (282)
T ss_pred cchHHHHHHhhhcccceeeeeeeccccccccc-----cccceeeecccchHHHHHHHHHHHHH--HHHHHHHhhccCCcc
Confidence 45567778888899999999999999999988 99999999999999999998888886 689999999999999
Q ss_pred CCChHHHHHHhhc
Q 011289 370 RDVTPEATKELIE 382 (489)
Q Consensus 370 ~D~T~eav~~~~~ 382 (489)
+|+|.|.++..++
T Consensus 78 ~~i~~E~~a~SFn 90 (282)
T KOG2644|consen 78 DDITQEEMALSFN 90 (282)
T ss_pred chhhHHHHHHhhC
Confidence 9999999999864
No 55
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=87.91 E-value=1.7 Score=39.15 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=71.8
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
+||||.+...| + +- .|.-...++.+|++.|++|+..+...- ++ +++..|+++++|+|..|+=.
T Consensus 11 ~rprvlvak~G--l-Dg----------Hd~gakvia~~l~d~GfeVi~~g~~~t-p~---e~v~aA~~~dv~vIgvSsl~ 73 (143)
T COG2185 11 ARPRVLVAKLG--L-DG----------HDRGAKVIARALADAGFEVINLGLFQT-PE---EAVRAAVEEDVDVIGVSSLD 73 (143)
T ss_pred CCceEEEeccC--c-cc----------cccchHHHHHHHHhCCceEEecCCcCC-HH---HHHHHHHhcCCCEEEEEecc
Confidence 68999999888 2 11 244457899999999999998877654 33 34444455579999999744
Q ss_pred cCCCCCchHHHHHh---cC--CeE-EeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHH
Q 011289 87 SMGDKDFVKPLLQK---KG--TIY-FNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCF 151 (489)
Q Consensus 87 s~G~~D~~~~~l~~---~G--~~~-f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~ 151 (489)
-+..++++++++. .| .++ +-|=.+-|+.-.-+...+ --=+.-||-|....+..
T Consensus 74 -g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G-----------~~~if~pgt~~~~~~~~ 132 (143)
T COG2185 74 -GGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMG-----------VDRIFGPGTPIEEALSD 132 (143)
T ss_pred -chHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhC-----------cceeeCCCCCHHHHHHH
Confidence 4666666666554 46 344 333334444311111111 12245789988876654
No 56
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=85.73 E-value=5.9 Score=35.37 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=51.9
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
++++|.+.+.|.|.- |-.-.++..+|++.|++++++|.--- ++++.+++.+ .++|+|.+|--.
T Consensus 2 ~~~~vl~~~~~gD~H-------------~lG~~iv~~~lr~~G~eVi~LG~~vp-~e~i~~~a~~---~~~d~V~lS~~~ 64 (137)
T PRK02261 2 KKKTVVLGVIGADCH-------------AVGNKILDRALTEAGFEVINLGVMTS-QEEFIDAAIE---TDADAILVSSLY 64 (137)
T ss_pred CCCEEEEEeCCCChh-------------HHHHHHHHHHHHHCCCEEEECCCCCC-HHHHHHHHHH---cCCCEEEEcCcc
Confidence 578887777776654 55567889999999999999986322 4555555544 369999988755
Q ss_pred cCCCCCchHHHHHhc
Q 011289 87 SMGDKDFVKPLLQKK 101 (489)
Q Consensus 87 s~G~~D~~~~~l~~~ 101 (489)
+. ....+++.++++
T Consensus 65 ~~-~~~~~~~~~~~L 78 (137)
T PRK02261 65 GH-GEIDCRGLREKC 78 (137)
T ss_pred cc-CHHHHHHHHHHH
Confidence 53 233345555444
No 57
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=85.68 E-value=2.6 Score=36.94 Aligned_cols=65 Identities=25% Similarity=0.275 Sum_probs=50.8
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
.||-++-...+.++.|.++.... - .|..++..+|+.+.+.+++-|++.|++| |+.|++-..+.-+
T Consensus 44 fDSi~~~~~~~~~~~~~~~~~~p-~-kD~TD~e~Al~~~~~~~~~~i~v~Ga~G-gR~DH~lanl~~l 108 (123)
T PF04263_consen 44 FDSISPEVLEFYKSKGVEIIHFP-E-KDYTDLEKALEYAIEQGPDEIIVLGALG-GRFDHTLANLNLL 108 (123)
T ss_dssp SSSS-HHHHHHHHHCTTEEEEE--S-TTS-HHHHHHHHHHHTTTSEEEEES-SS-SSHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHhhccceeccc-c-cccCHHHHHHHHHHHCCCCEEEEEecCC-CcHHHHHHHHHHH
Confidence 48889999999999999988777 4 4557788888888777799999999999 8999987766543
No 58
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=84.28 E-value=4.7 Score=35.69 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=42.3
Q ss_pred CCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHH
Q 011289 30 RGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQ 99 (489)
Q Consensus 30 ~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~ 99 (489)
.|.+.|..-.+++.+|+..|++|+++|+--- ++.+.++.. ++++|+|-.|.=.+. ....++++++
T Consensus 8 ~gD~HdiGkniv~~~L~~~GfeVidLG~~v~-~e~~v~aa~---~~~adiVglS~L~t~-~~~~~~~~~~ 72 (128)
T cd02072 8 GSDCHAVGNKILDHAFTEAGFNVVNLGVLSP-QEEFIDAAI---ETDADAILVSSLYGH-GEIDCKGLRE 72 (128)
T ss_pred CCchhHHHHHHHHHHHHHCCCEEEECCCCCC-HHHHHHHHH---HcCCCEEEEeccccC-CHHHHHHHHH
Confidence 3556677778999999999999999987443 344433333 336899998873332 2333444443
No 59
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=84.08 E-value=3.8 Score=39.32 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=47.5
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
+++|+.|+|-+-.. -.|-----.+..+++.|+++..+....++.++|++.|. ++|+|...||-
T Consensus 32 ~~~i~FIPtAs~~~-----------~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~-----~~d~IyVgGGN 94 (224)
T COG3340 32 RKTIAFIPTASVDS-----------EDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLM-----KADIIYVGGGN 94 (224)
T ss_pred CceEEEEecCcccc-----------chHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhh-----hccEEEECCch
Confidence 57999999843211 11222234466899999999999999999999998886 37999999983
No 60
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=83.47 E-value=14 Score=37.47 Aligned_cols=113 Identities=17% Similarity=0.130 Sum_probs=66.5
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHH---------HHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC-CeEE
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELE---------KTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYF 106 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~---------~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G-~~~f 106 (489)
-+..+...|+..|+++..+..-++..+... +.+.+.+. ++|+||+|=.. .=...+.++.+. .-++
T Consensus 163 iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~-~aDiVI~t~p~----~~i~~~~l~~~~~g~vI 237 (296)
T PRK08306 163 TGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVG-KIDIIFNTIPA----LVLTKEVLSKMPPEALI 237 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhC-CCCEEEECCCh----hhhhHHHHHcCCCCcEE
Confidence 456778888889987766544433222211 13445555 59999987322 223455666665 4566
Q ss_pred eeeeecCCCceeeEEEccCCCCccccccEEE---EEcCC-C-hHHHHHHHHHHHHHHHHHhc
Q 011289 107 NKVCMKPGKPLTFAEINIKPTDDVMVNKILA---FGLPG-N-PVSCIVCFHLYIVPAIRHLS 163 (489)
Q Consensus 107 ~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v---~~LPG-n-P~aa~~~~~~~v~P~L~~l~ 163 (489)
-.++..||. +-|..... .+..+ -+||| . |..+...+...+..+|..+.
T Consensus 238 IDla~~pgg-td~~~a~~--------~Gv~~~~~~~lpg~vap~ta~~~~~~~i~~~l~~~~ 290 (296)
T PRK08306 238 IDLASKPGG-TDFEYAEK--------RGIKALLAPGLPGKVAPKTAGQILANVLSQLLAEDL 290 (296)
T ss_pred EEEccCCCC-cCeeehhh--------CCeEEEEECCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 678889987 44432221 12223 46774 3 66777777777788876654
No 61
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=83.25 E-value=3.3 Score=40.90 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=39.3
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
+.|||++|+|.+. +| +.........++++|++.+..-.+.+-.++-...+.+.+. ++|.|+.+||-
T Consensus 27 ~~~rI~~iptAS~--~~-----------~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~-~ad~I~~~GGn 92 (250)
T TIGR02069 27 EDAIIVIITSASE--EP-----------REVGERYITIFSRLGVKEVKILDVREREDASDENAIALLS-NATGIFFTGGD 92 (250)
T ss_pred CCceEEEEeCCCC--Ch-----------HHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHh-hCCEEEEeCCC
Confidence 4589999999754 11 2334456677889999644333343212222222334454 49999999974
No 62
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=82.89 E-value=4 Score=36.27 Aligned_cols=77 Identities=18% Similarity=0.218 Sum_probs=51.1
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
|+|||-+-..|.- +.|.-.-+++.+|+..|++|++.+.-.. ++++.++. .++++|+|..|+=.
T Consensus 1 ~~~~v~~a~~g~D-------------~Hd~g~~iv~~~l~~~GfeVi~lg~~~s-~e~~v~aa---~e~~adii~iSsl~ 63 (132)
T TIGR00640 1 RRPRILVAKMGQD-------------GHDRGAKVIATAYADLGFDVDVGPLFQT-PEEIARQA---VEADVHVVGVSSLA 63 (132)
T ss_pred CCCEEEEEeeCCC-------------ccHHHHHHHHHHHHhCCcEEEECCCCCC-HHHHHHHH---HHcCCCEEEEcCch
Confidence 5788888777643 3456667999999999999999987633 44443333 33479999998743
Q ss_pred cCCCCCchHHHHHhc
Q 011289 87 SMGDKDFVKPLLQKK 101 (489)
Q Consensus 87 s~G~~D~~~~~l~~~ 101 (489)
+ +..+.++++++++
T Consensus 64 ~-~~~~~~~~~~~~L 77 (132)
T TIGR00640 64 G-GHLTLVPALRKEL 77 (132)
T ss_pred h-hhHHHHHHHHHHH
Confidence 2 2334455555544
No 63
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=82.00 E-value=13 Score=33.22 Aligned_cols=65 Identities=22% Similarity=0.191 Sum_probs=42.8
Q ss_pred CcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHh
Q 011289 31 GQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQK 100 (489)
Q Consensus 31 g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~ 100 (489)
|.+.|..-.++..+|++.|++|+++|.--- ++++.++.. ++++|+|-.|.=.+ .....+++.++.
T Consensus 11 ~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~-~e~~v~aa~---~~~adiVglS~l~~-~~~~~~~~~~~~ 75 (134)
T TIGR01501 11 SDCHAVGNKILDHAFTNAGFNVVNLGVLSP-QEEFIKAAI---ETKADAILVSSLYG-HGEIDCKGLRQK 75 (134)
T ss_pred CChhhHhHHHHHHHHHHCCCEEEECCCCCC-HHHHHHHHH---HcCCCEEEEecccc-cCHHHHHHHHHH
Confidence 445677778999999999999999987543 344444433 34699999888444 223334444433
No 64
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=81.35 E-value=5.4 Score=38.02 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=43.8
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecC-CHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRD-DEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~D-d~~~i~~~l~~~~~~~~DlvittGG 85 (489)
..++|++|+|...- ++.........++++|+++..+..+.+ +.+++.+ .+. ++|+|+.+||
T Consensus 28 ~~~~i~~iptA~~~-------------~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~----~l~-~ad~I~~~GG 89 (210)
T cd03129 28 AGARVLFIPTASGD-------------RDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVA----RLL-EADGIFVGGG 89 (210)
T ss_pred CCCeEEEEeCCCCC-------------hHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHH----HHh-hCCEEEEcCC
Confidence 46899999987532 345667788899999999988876643 2233333 343 4899999997
Q ss_pred C
Q 011289 86 V 86 (489)
Q Consensus 86 ~ 86 (489)
-
T Consensus 90 ~ 90 (210)
T cd03129 90 N 90 (210)
T ss_pred c
Confidence 5
No 65
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=79.13 E-value=4.4 Score=38.86 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=41.1
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhC-CCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQ-HCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~-G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
+++||++|+|.... ++.........+++. |+++..+.... .+...+.+. +||+|+.+||
T Consensus 30 ~~~~i~~IptAs~~-------------~~~~~~~~~~a~~~l~G~~~~~~~~~~------~~~~~~~l~-~ad~I~l~GG 89 (212)
T cd03146 30 ARPKVLFVPTASGD-------------RDEYTARFYAAFESLRGVEVSHLHLFD------TEDPLDALL-EADVIYVGGG 89 (212)
T ss_pred CCCeEEEECCCCCC-------------HHHHHHHHHHHHhhccCcEEEEEeccC------cccHHHHHh-cCCEEEECCc
Confidence 56899999997652 234456678888999 99988775544 122233344 4999999996
No 66
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=77.59 E-value=51 Score=30.12 Aligned_cols=76 Identities=12% Similarity=0.171 Sum_probs=53.4
Q ss_pred EEEEEeCCcccCCCccCCc----hHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCC
Q 011289 292 VAILTVSDTVASGAGPDRS----GPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF 367 (489)
Q Consensus 292 v~Ii~~GdEi~~G~~~D~n----~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~ 367 (489)
+-|+.+||.+..|.-.+.. ...+++.|.+.... ++++...++-.+...++.+.+.... ....|+|+...|+=-
T Consensus 3 ~~i~~~GDSit~G~g~~~~~~~~~~~l~~~l~~~~~~--~~~~~n~g~~G~t~~~~~~~l~~~~-~~~pd~Vii~~G~ND 79 (191)
T cd01836 3 LRLLVLGDSTAAGVGVETQDQALAGQLARGLAAITGR--GVRWRLFAKTGATSADLLRQLAPLP-ETRFDVAVISIGVND 79 (191)
T ss_pred eEEEEEeccccccccccchhccHHHHHHHHHHHhhCC--ceEEEEEecCCcCHHHHHHHHHhcc-cCCCCEEEEEecccC
Confidence 4577889999988543322 22356666653211 6789999999999999998888743 358999999888764
Q ss_pred CCC
Q 011289 368 TPR 370 (489)
Q Consensus 368 t~~ 370 (489)
...
T Consensus 80 ~~~ 82 (191)
T cd01836 80 VTH 82 (191)
T ss_pred cCC
Confidence 433
No 67
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=74.27 E-value=8.5 Score=37.03 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=40.5
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
+.++|++|+|...- .+.........++++|+.....-.+.+..+.-...+.+.+. ++|+|+.+||-
T Consensus 28 ~~~~i~~iptA~~~-------------~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~-~ad~I~~~GG~ 93 (217)
T cd03145 28 AGARIVVIPAASEE-------------PAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLR-DADGIFFTGGD 93 (217)
T ss_pred CCCcEEEEeCCCcC-------------hhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHH-hCCEEEEeCCc
Confidence 46899999986532 13445667778888998755554444211111122334444 49999999974
No 68
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=73.31 E-value=4.5 Score=36.61 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=28.2
Q ss_pred HHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 41 LLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 41 l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
....++++|+++..+.....+.+++.+.|+ ++|+|..+||
T Consensus 5 ~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~-----~ad~I~~~GG 44 (154)
T PF03575_consen 5 FRKAFRKLGFEVDQLDLSDRNDADILEAIR-----EADAIFLGGG 44 (154)
T ss_dssp HHHHHHHCT-EEEECCCTSCGHHHHHHHHH-----HSSEEEE--S
T ss_pred HHHHHHHCCCEEEEEeccCCChHHHHHHHH-----hCCEEEECCC
Confidence 467789999998888888877775555554 3899999997
No 69
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=72.69 E-value=20 Score=35.34 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=39.7
Q ss_pred HHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 41 LLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 41 l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
+...-++.|+++.....++ +.++..+.++++.++++|+||++|. .-.|.+.++..+.
T Consensus 23 ~~~~~~~~gv~~~~~e~~~-~~~~~~~~i~~~~~~g~dlIi~~g~---~~~~~~~~vA~~~ 79 (258)
T cd06353 23 RKAAEKALGVEVTYVENVP-EGADAERVLRELAAQGYDLIFGTSF---GFMDAALKVAKEY 79 (258)
T ss_pred HHHHHHhcCCeEEEEecCC-chHhHHHHHHHHHHcCCCEEEECch---hhhHHHHHHHHHC
Confidence 3444556789888776665 6788999999988878999999664 2334444444444
No 70
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=72.41 E-value=13 Score=34.18 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=49.2
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEE--cChHHHHHHHHHhC---CCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEe
Q 011289 9 PTIAVLSTGDELVEPTTQCLDRGQIR--DSNRAMLLAAAMQQ---HCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTS 83 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~--dsn~~~l~a~l~~~---G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlvitt 83 (489)
|.+-|+..||-+..- .|.-. .+=...+...+.+. ++++...++-.+....+.+.+.+......|+|+..
T Consensus 1 ~~~~i~~~GDSit~G------~g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~~~~~~pd~Vii~ 74 (191)
T cd01836 1 PPLRLLVLGDSTAAG------VGVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAPLPETRFDVAVIS 74 (191)
T ss_pred CCeEEEEEecccccc------ccccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHhcccCCCCEEEEE
Confidence 455678889998832 11111 11222356666543 67899999999999999998887444468999988
Q ss_pred CCC
Q 011289 84 GGV 86 (489)
Q Consensus 84 GG~ 86 (489)
.|+
T Consensus 75 ~G~ 77 (191)
T cd01836 75 IGV 77 (191)
T ss_pred ecc
Confidence 876
No 71
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=71.67 E-value=11 Score=36.99 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=39.1
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
+.|||++|+|-...- + ++.-.......+++.|+++..+... ++. .+.+. ++|+|+.+||-
T Consensus 30 ~~~~v~fIPtAs~~~---~--------~~~y~~~~~~af~~lG~~v~~l~~~----~d~----~~~l~-~ad~I~v~GGn 89 (233)
T PRK05282 30 GRRKAVFIPYAGVTQ---S--------WDDYTAKVAEALAPLGIEVTGIHRV----ADP----VAAIE-NAEAIFVGGGN 89 (233)
T ss_pred CCCeEEEECCCCCCC---C--------HHHHHHHHHHHHHHCCCEEEEeccc----hhh----HHHHh-cCCEEEECCcc
Confidence 579999999965321 0 1121234677888999998766432 222 23444 49999999986
Q ss_pred c
Q 011289 87 S 87 (489)
Q Consensus 87 s 87 (489)
+
T Consensus 90 t 90 (233)
T PRK05282 90 T 90 (233)
T ss_pred H
Confidence 4
No 72
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=70.15 E-value=11 Score=34.21 Aligned_cols=52 Identities=17% Similarity=0.276 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCeEEEEEee----cCCHHHHHHHHHHHHh-cCCCEEEEeCCCcCCC
Q 011289 39 AMLLAAAMQQHCKLIDLGIV----RDDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 90 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v----~Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G~ 90 (489)
-.|...|++.|+++.+++.. ++|.-.+...+.+... .++|+-|+..|||+|.
T Consensus 16 ~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTGiG~ 72 (151)
T COG0698 16 EIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGTGIGM 72 (151)
T ss_pred HHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCChhH
Confidence 35677889999999998765 3455556666655543 2589999999999884
No 73
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=70.05 E-value=14 Score=34.63 Aligned_cols=47 Identities=13% Similarity=-0.012 Sum_probs=32.2
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
+||-++.+..+|++.|+++.....-.++.+++ .+ + ..|.||.+||-+
T Consensus 8 ~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~----~~-~--~~d~iilsgGpg 54 (188)
T TIGR00566 8 YDSFTYNLVQYFCELGAEVVVKRNDSLTLQEI----EA-L--LPLLIVISPGPC 54 (188)
T ss_pred CcCHHHHHHHHHHHcCCceEEEECCCCCHHHH----Hh-c--CCCEEEEcCCCC
Confidence 68999999999999999876332222223332 22 2 479899999984
No 74
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=69.83 E-value=9.7 Score=36.30 Aligned_cols=66 Identities=24% Similarity=0.195 Sum_probs=52.3
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
.||-+.-..+++++.+.++..+..-+|+ .+...+|+.+.++++|-|+..|++| |+.|++-..+.-+
T Consensus 45 fDSi~~~~~~~~~~~~~~~~~~~~eKD~-TD~e~Al~~~~~~~~~~i~i~Ga~G-gR~DH~lani~~L 110 (203)
T TIGR01378 45 FDSIDEEELDFYKKAGVKIIVFPPEKDT-TDLELALKYALERGADEITILGATG-GRLDHTLANLNLL 110 (203)
T ss_pred cccCCHHHHHHHHHcCCceEEcCCCCCC-CHHHHHHHHHHHCCCCEEEEEcCCC-CcHHHHHHHHHHH
Confidence 4777788888889999888877777765 4577888887776788889999988 6999988776654
No 75
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=69.56 E-value=14 Score=33.33 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=53.2
Q ss_pred CcceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 287 YTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 287 ~~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
-++||+-+...| +.| -|.-...+++.|.+. |++|.......--.|.+..+++ +.+|+|..|+ +.
T Consensus 10 g~rprvlvak~G---lDg--Hd~gakvia~~l~d~-----GfeVi~~g~~~tp~e~v~aA~~-----~dv~vIgvSs-l~ 73 (143)
T COG2185 10 GARPRVLVAKLG---LDG--HDRGAKVIARALADA-----GFEVINLGLFQTPEEAVRAAVE-----EDVDVIGVSS-LD 73 (143)
T ss_pred CCCceEEEeccC---ccc--cccchHHHHHHHHhC-----CceEEecCCcCCHHHHHHHHHh-----cCCCEEEEEe-cc
Confidence 368999999988 222 244456889999999 9999988877665444444443 3799999887 44
Q ss_pred CCCCCChHHHHHHh
Q 011289 367 FTPRDVTPEATKEL 380 (489)
Q Consensus 367 ~t~~D~T~eav~~~ 380 (489)
-.+.+..++.++.+
T Consensus 74 g~h~~l~~~lve~l 87 (143)
T COG2185 74 GGHLTLVPGLVEAL 87 (143)
T ss_pred chHHHHHHHHHHHH
Confidence 45555555554443
No 76
>PRK05670 anthranilate synthase component II; Provisional
Probab=69.43 E-value=16 Score=34.18 Aligned_cols=57 Identities=18% Similarity=0.115 Sum_probs=36.2
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC-cCCCCCchHHHH
Q 011289 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV-SMGDKDFVKPLL 98 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~-s~G~~D~~~~~l 98 (489)
|+-.+.+..+|++.|+++..+..-..+.+.+ +.+ +.|.||.+||- ++.+.+...+.+
T Consensus 9 d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~-----~~~--~~dglIlsgGpg~~~d~~~~~~~l 66 (189)
T PRK05670 9 DSFTYNLVQYLGELGAEVVVYRNDEITLEEI-----EAL--NPDAIVLSPGPGTPAEAGISLELI 66 (189)
T ss_pred CchHHHHHHHHHHCCCcEEEEECCCCCHHHH-----HhC--CCCEEEEcCCCCChHHcchHHHHH
Confidence 6777999999999999987655433333332 222 37999999987 443333333333
No 77
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=69.31 E-value=12 Score=31.98 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=43.4
Q ss_pred CcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 31 GQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 31 g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
|...+---.+++.+|++.|+++.+++. .-.++++.+++.+. ++|+|..|.-... ....+++.++.+
T Consensus 9 ~e~H~lG~~~~~~~l~~~G~~V~~lg~-~~~~~~l~~~~~~~---~pdvV~iS~~~~~-~~~~~~~~i~~l 74 (119)
T cd02067 9 GDGHDIGKNIVARALRDAGFEVIDLGV-DVPPEEIVEAAKEE---DADAIGLSGLLTT-HMTLMKEVIEEL 74 (119)
T ss_pred CchhhHHHHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHHc---CCCEEEEeccccc-cHHHHHHHHHHH
Confidence 344456668999999999999998873 34456666666543 5899999875332 233445554444
No 78
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=68.76 E-value=14 Score=39.11 Aligned_cols=49 Identities=12% Similarity=0.075 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCeEEEEEeecCCH--HHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDDE--EELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~--~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
-+...|++.|+++..+.-+..|+ +.+.+.++.+.+.++|+||-.||=|+
T Consensus 68 ~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~ 118 (395)
T PRK15454 68 GLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSV 118 (395)
T ss_pred HHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHH
Confidence 36777889999887776555454 66778887777668999999998765
No 79
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=68.72 E-value=17 Score=34.52 Aligned_cols=76 Identities=17% Similarity=0.196 Sum_probs=50.6
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
++||.+.+.+.| ..|--..++..++++.|++++++|. .=.++++.+++.+. ++|+|-.|.-..
T Consensus 82 ~~~vl~~~~~gd-------------~H~lG~~~v~~~l~~~G~~vi~lG~-~~p~~~l~~~~~~~---~~d~v~lS~~~~ 144 (201)
T cd02070 82 KGKVVIGTVEGD-------------IHDIGKNLVATMLEANGFEVIDLGR-DVPPEEFVEAVKEH---KPDILGLSALMT 144 (201)
T ss_pred CCeEEEEecCCc-------------cchHHHHHHHHHHHHCCCEEEECCC-CCCHHHHHHHHHHc---CCCEEEEecccc
Confidence 466655555444 4455557999999999999999882 22367777777654 599998887544
Q ss_pred CCCCCchHHHHHhc
Q 011289 88 MGDKDFVKPLLQKK 101 (489)
Q Consensus 88 ~G~~D~~~~~l~~~ 101 (489)
.. .+.+++.++.+
T Consensus 145 ~~-~~~~~~~i~~l 157 (201)
T cd02070 145 TT-MGGMKEVIEAL 157 (201)
T ss_pred cc-HHHHHHHHHHH
Confidence 33 34455555544
No 80
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=67.71 E-value=18 Score=35.50 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhCCCeEEEEE---------eecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC
Q 011289 37 NRAMLLAAAMQQHCKLIDLG---------IVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG 102 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~---------~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G 102 (489)
-...+.+++++.|++|.... +..=+++.+.+.++++...++|.|+++ ++..-..|++.++=+++|
T Consensus 133 v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifis-CTnLrt~~vi~~lE~~lG 206 (239)
T TIGR02990 133 TSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLS-CTALRAATCAQRIEQAIG 206 (239)
T ss_pred HHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEe-CCCchhHHHHHHHHHHHC
Confidence 34567778899999998873 344467888888887755568999998 788877787777666665
No 81
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=67.49 E-value=13 Score=30.89 Aligned_cols=70 Identities=19% Similarity=0.126 Sum_probs=46.9
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEE-EeCCCcCCCCCchHHHHHhcC-CeEE
Q 011289 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILL-TSGGVSMGDKDFVKPLLQKKG-TIYF 106 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlvi-ttGG~s~G~~D~~~~~l~~~G-~~~f 106 (489)
+.+-..+...++++|++...+ --.+..+.-...|.+.+. .+|+|| .|+=+|......+++..++.+ .++|
T Consensus 9 ~~~~~~~~~~~~~~G~~~~~h-g~~~~~~~~~~~l~~~i~-~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 9 EDRERRYKRILEKYGGKLIHH-GRDGGDEKKASRLPSKIK-KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred cccHHHHHHHHHHcCCEEEEE-ecCCCCccchhHHHHhcC-CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 455677899999999999888 222333333445666665 489887 777777766666666666666 4444
No 82
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=67.24 E-value=14 Score=33.49 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCeEEEEEe---ecCCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011289 40 MLLAAAMQQHCKLIDLGI---VRDDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~---v~Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
.|.+.|++.|++|.+++. =+.|.-.+...+.+++. ..+|.-|..-|+|+|
T Consensus 15 ~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG 68 (144)
T TIGR00689 15 EIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGTGIG 68 (144)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHH
Confidence 456788899999999987 23456667777776653 358999999999976
No 83
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=67.01 E-value=14 Score=33.47 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCCeEEEEEee----cCCHHHHHHHHHHHHh-cCCCEEEEeCCCcCCC
Q 011289 39 AMLLAAAMQQHCKLIDLGIV----RDDEEELEKTLDNAFS-AGIDILLTSGGVSMGD 90 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v----~Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G~ 90 (489)
-.|...|++.|+++.+++.- +||.-.+...+.+++. ..+|.=|..-|+|+|-
T Consensus 16 ~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~ 72 (148)
T TIGR02133 16 EALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGE 72 (148)
T ss_pred HHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCCChhh
Confidence 35667888999999999972 3566777777777663 3589999999998763
No 84
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=66.94 E-value=1.1e+02 Score=31.91 Aligned_cols=126 Identities=14% Similarity=0.167 Sum_probs=68.7
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHH--------------HHHHHHHhcCCCEEEEeCCC-cC-CCCCchHHHHHh
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELE--------------KTLDNAFSAGIDILLTSGGV-SM-GDKDFVKPLLQK 100 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~--------------~~l~~~~~~~~DlvittGG~-s~-G~~D~~~~~l~~ 100 (489)
-+......++.+|+++..+..-++..+.+. +.+.+.+. ++|+||++=+. +. .+.=++.+.++.
T Consensus 178 vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~-~aDvVI~a~~~~g~~~p~lit~~~l~~ 256 (370)
T TIGR00518 178 VGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVK-RADLLIGAVLIPGAKAPKLVSNSLVAQ 256 (370)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHc-cCCEEEEccccCCCCCCcCcCHHHHhc
Confidence 356666677778876655443222111111 23445555 59999987433 21 222246778877
Q ss_pred cC-CeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEc---CC-ChHHHHHHHHHHHHHHHHHhc
Q 011289 101 KG-TIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGL---PG-NPVSCIVCFHLYIVPAIRHLS 163 (489)
Q Consensus 101 ~G-~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~L---PG-nP~aa~~~~~~~v~P~L~~l~ 163 (489)
+. .-++-.+++.||...-+.+...-........+..+++. || .|..+...|..-+.|+|..+.
T Consensus 257 mk~g~vIvDva~d~GG~~e~~~~t~~d~p~~~~~Gv~~~~v~nlP~~~p~~aS~~~~~~l~~~l~~~~ 324 (370)
T TIGR00518 257 MKPGAVIVDVAIDQGGCVETSRPTTHDQPTYAVHDVVHYCVANMPGAVPKTSTYALTNATMPYVLELA 324 (370)
T ss_pred CCCCCEEEEEecCCCCCccCCcCCCCCCCEEEECCeEEEEeCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 75 56677788888876333211000000001123444554 44 366777778888888888876
No 85
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=66.06 E-value=31 Score=30.93 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=54.1
Q ss_pred EEEEeCCcccCCCcc-CCc--hHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCC
Q 011289 293 AILTVSDTVASGAGP-DRS--GPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 369 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~-D~n--~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~ 369 (489)
-|+.+||.+..|.-. +.+ ...+++.|.+. ..++++....+-.+....+.+.+...+...++|+|+...|+=-..
T Consensus 2 ~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~---~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~ 78 (177)
T cd01822 2 TILALGDSLTAGYGLPPEEGWPALLQKRLDAR---GIDVTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGL 78 (177)
T ss_pred eEEEEccccccCcCCCCCCchHHHHHHHHHHh---CCCeEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccc
Confidence 477889999887543 222 23455555532 127788888998888887777777666545899999988865333
Q ss_pred CCChHHHHH
Q 011289 370 RDVTPEATK 378 (489)
Q Consensus 370 ~D~T~eav~ 378 (489)
...+.+.+.
T Consensus 79 ~~~~~~~~~ 87 (177)
T cd01822 79 RGIPPDQTR 87 (177)
T ss_pred cCCCHHHHH
Confidence 344444333
No 86
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=66.03 E-value=16 Score=32.84 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
.|.+.|++.|++|.+++.-+.|..++...+.++.. .++|.=|..-|+|+|
T Consensus 17 ~l~~~L~~~g~eV~D~G~~~~dypd~a~~va~~V~~~e~~~GIliCGtGiG 67 (141)
T PRK12613 17 LIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAG 67 (141)
T ss_pred HHHHHHHHCCCEEEEcCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCHh
Confidence 45678889999999999755677777777777663 358888888888876
No 87
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=65.39 E-value=12 Score=33.61 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCeEEEEEeec---CCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVR---DDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~---Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
..|.+.|+++|+++.+++.-. .|.-++...+.+++. .++|.-|+.-|+|.|
T Consensus 15 ~~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~GIliCgtGiG 69 (140)
T PF02502_consen 15 EAIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADRGILICGTGIG 69 (140)
T ss_dssp HHHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHTTSSSEEEEEESSSHH
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCeEEEEcCCChh
Confidence 356778889999999999876 455666666666654 358999999999876
No 88
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=65.05 E-value=18 Score=34.40 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=42.9
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCC-CHHHHHHHHHHhhhcCCCcEEEEeCCC
Q 011289 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPD-DVGKIKEVLRRWSDIDKMDLILTLGGT 365 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~D-d~~~I~~~l~~~~~~~~~DlVIttGG~ 365 (489)
..+++.+|.+...- .+.......+.+++. |+++..+..+.+ +.+++.+.| . .+|.|+.+||-
T Consensus 28 ~~~~i~~iptA~~~-----~~~~~~~~~~~~~~l-----G~~~~~~~~~~~~~~~~~~~~l----~--~ad~I~~~GG~ 90 (210)
T cd03129 28 AGARVLFIPTASGD-----RDEYGEEYRAAFERL-----GVEVVHLLLIDTANDPDVVARL----L--EADGIFVGGGN 90 (210)
T ss_pred CCCeEEEEeCCCCC-----hHHHHHHHHHHHHHc-----CCceEEEeccCCCCCHHHHHHH----h--hCCEEEEcCCc
Confidence 46899999886532 344556777888888 999988887753 223333333 3 68999999974
No 89
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=64.78 E-value=18 Score=38.73 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=67.2
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEE---eCC
Q 011289 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLT---SGG 85 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlvit---tGG 85 (489)
++|+++++++.++-+. .........-.+.+.|++.|++++..+.+.-+.++++++.+.+...++|.||+ |+|
T Consensus 1 ~~ig~v~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~ 75 (452)
T cd00578 1 PKIGFVTGSQHLYGEE-----LLEQVEEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFG 75 (452)
T ss_pred CEEEEEEecccccChh-----HHHHHHHHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccc
Confidence 6899999999873222 22223455666777788889999998866548889998888877657999986 554
Q ss_pred CcCCCCCchHHHHHhcC-CeEEeeeeec
Q 011289 86 VSMGDKDFVKPLLQKKG-TIYFNKVCMK 112 (489)
Q Consensus 86 ~s~G~~D~~~~~l~~~G-~~~f~~v~~k 112 (489)
.+ .++..+++.+. .++++...-.
T Consensus 76 ~~----~~~~~~~~~~~~Pvll~a~~~~ 99 (452)
T cd00578 76 PA----KMWIAGLSELRKPVLLLATQFN 99 (452)
T ss_pred cH----HHHHHHHHhcCCCEEEEeCCCC
Confidence 44 45666677776 6777776553
No 90
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=64.76 E-value=13 Score=35.39 Aligned_cols=66 Identities=23% Similarity=0.230 Sum_probs=51.5
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
.||-++-..+.+++.|.++..+..-+| ..++..+|+.+.+++++-|+..|++| |+.|++-..+.-+
T Consensus 49 fDSi~~~~~~~~~~~~~~~~~~p~~KD-~TD~e~Al~~~~~~~~~~i~i~Ga~G-gR~DH~lani~~l 114 (208)
T cd07995 49 FDSISPEVLEYYKSKGVEIIHFPDEKD-FTDFEKALKLALERGADEIVILGATG-GRLDHTLANLNLL 114 (208)
T ss_pred CcCCCHHHHHHHHhcCCeEEECCCCCC-CCHHHHHHHHHHHcCCCEEEEEccCC-CcHHHHHHHHHHH
Confidence 478778888888888887776655454 46678888888877789999999998 6999988776654
No 91
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=64.73 E-value=12 Score=34.40 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHH--------HHHHHhcCCCEEEE-eCCCcCCCCCchHHHHHhc
Q 011289 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKT--------LDNAFSAGIDILLT-SGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~--------l~~~~~~~~Dlvit-tGG~s~G~~D~~~~~l~~~ 101 (489)
--+.-++..|+.+|++|+...+ |-..++.+. +++++. .+|++|| ||..++ ...+-++++
T Consensus 33 ~vG~g~A~~lr~~Ga~V~V~e~--DPi~alqA~~dGf~v~~~~~a~~-~adi~vtaTG~~~v----i~~e~~~~m 100 (162)
T PF00670_consen 33 KVGKGIARALRGLGARVTVTEI--DPIRALQAAMDGFEVMTLEEALR-DADIFVTATGNKDV----ITGEHFRQM 100 (162)
T ss_dssp HHHHHHHHHHHHTT-EEEEE-S--SHHHHHHHHHTT-EEE-HHHHTT-T-SEEEE-SSSSSS----B-HHHHHHS
T ss_pred cccHHHHHHHhhCCCEEEEEEC--ChHHHHHhhhcCcEecCHHHHHh-hCCEEEECCCCccc----cCHHHHHHh
Confidence 4567889999999999875544 323344443 456776 5999998 554433 344555654
No 92
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=64.33 E-value=18 Score=31.38 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=37.0
Q ss_pred CcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 31 GQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 31 g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
|.+.|---.++..+++..|+++++.+.--. .+++.+++.+. ++|+|.+|+-.
T Consensus 9 gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp-~e~~~~~a~~~---~~d~V~iS~~~ 60 (122)
T cd02071 9 LDGHDRGAKVIARALRDAGFEVIYTGLRQT-PEEIVEAAIQE---DVDVIGLSSLS 60 (122)
T ss_pred CChhHHHHHHHHHHHHHCCCEEEECCCCCC-HHHHHHHHHHc---CCCEEEEcccc
Confidence 344555668889999999999999986422 34555555443 69999998753
No 93
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=63.27 E-value=16 Score=36.12 Aligned_cols=66 Identities=20% Similarity=0.222 Sum_probs=39.2
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCC
Q 011289 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGT 365 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~ 365 (489)
..+||++|.+... ..+.......+.++++ |++......+.+-.+.-...+.+.+. ++|.|+.+||-
T Consensus 27 ~~~rI~~iptAS~-----~~~~~~~~~~~~~~~l-----G~~~v~~l~i~~r~~a~~~~~~~~l~--~ad~I~~~GGn 92 (250)
T TIGR02069 27 EDAIIVIITSASE-----EPREVGERYITIFSRL-----GVKEVKILDVREREDASDENAIALLS--NATGIFFTGGD 92 (250)
T ss_pred CCceEEEEeCCCC-----ChHHHHHHHHHHHHHc-----CCceeEEEecCChHHccCHHHHHHHh--hCCEEEEeCCC
Confidence 4579999988543 1122234555677777 98655555554322222222333444 79999999984
No 94
>PLN02335 anthranilate synthase
Probab=62.64 E-value=30 Score=33.39 Aligned_cols=46 Identities=22% Similarity=0.044 Sum_probs=31.3
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
|+-.+.|..+|++.|+++..+..-.-+.+.+ .. .+.|.||.+||-+
T Consensus 28 dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~----~~---~~~d~iVisgGPg 73 (222)
T PLN02335 28 DSFTYNLCQYMGELGCHFEVYRNDELTVEEL----KR---KNPRGVLISPGPG 73 (222)
T ss_pred CCHHHHHHHHHHHCCCcEEEEECCCCCHHHH----Hh---cCCCEEEEcCCCC
Confidence 6899999999999998877553211122222 11 1479999999876
No 95
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=62.58 E-value=16 Score=32.97 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=66.9
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEE---cCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccc
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDV---VPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERE 384 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~---v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~ 384 (489)
|..|..+.+.|.+.+... |++|..++. =+.|..++...+.+.+....+|.-|..-|+|.+. +=+.+|
T Consensus 6 DhaG~~lK~~l~~~L~~~-g~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~--------siaANK- 75 (144)
T TIGR00689 6 DHAGLELKSEIIEHLKQK-GHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGTGIGM--------SIAANK- 75 (144)
T ss_pred CcchHHHHHHHHHHHHHC-CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHH--------HHHHhc-
Confidence 455555555444444443 999999886 4567888888888888767899999999999663 222222
Q ss_pred cccHHHHHHhcccccCC-CccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHH
Q 011289 385 TPGLLYVMMQESLKVTP-FAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 439 (489)
Q Consensus 385 l~g~~e~~~~~~~~~~p-~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l 439 (489)
.||+. ..+-..+ .+. .+...|+..|++|++--.....+.+.+--+|
T Consensus 76 ~~GIr-----aa~~~d~~~A~----~ar~hNnaNVl~lGar~ig~~~a~~iv~~fL 122 (144)
T TIGR00689 76 FKGIR-----AALCVDEYTAA----LARQHNDANVLCLGSRVVGVELALSIVDAFL 122 (144)
T ss_pred CCCeE-----EEEECCHHHHH----HHHHhcCCcEEEECccccCHHHHHHHHHHHH
Confidence 22221 0000011 111 2334688999999987655555554433333
No 96
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=62.00 E-value=31 Score=30.21 Aligned_cols=65 Identities=22% Similarity=0.256 Sum_probs=49.7
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhh
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELI 381 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~ 381 (489)
|+-++...+++++. |.++.... -.|. -+...+|+.+.. .+++-|+..|++| +.-|+|--.+.-+.
T Consensus 45 DSi~~~~~~~~~~~-----~~~~~~~p-~kD~-TD~e~Al~~~~~-~~~~~i~v~Ga~G-gR~DH~lanl~~l~ 109 (123)
T PF04263_consen 45 DSISPEVLEFYKSK-----GVEIIHFP-EKDY-TDLEKALEYAIE-QGPDEIIVLGALG-GRFDHTLANLNLLY 109 (123)
T ss_dssp SSS-HHHHHHHHHC-----TTEEEEE--STTS--HHHHHHHHHHH-TTTSEEEEES-SS-SSHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHhh-----ccceeccc-cccc-CHHHHHHHHHHH-CCCCEEEEEecCC-CcHHHHHHHHHHHH
Confidence 67777888889998 99988777 5555 778889988866 6899999999999 68899887777654
No 97
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=60.98 E-value=29 Score=35.10 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHhCCCeEEEEE-----eecC-CH------HHHHHHHHHHHhcCCCEEEEeCCCc-----------CCCCC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLG-----IVRD-DE------EELEKTLDNAFSAGIDILLTSGGVS-----------MGDKD 92 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~-----~v~D-d~------~~i~~~l~~~~~~~~DlvittGG~s-----------~G~~D 92 (489)
-|+.+++++|++.|.+...+. ++-| ++ ....+.+.++++. .+++|++|..| -|--|
T Consensus 122 lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~-~~v~Vv~Gf~g~~~~G~~ttLgRggSD 200 (288)
T cd04245 122 LNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDS-DEKLVIPGFYGYSKNGDIKTFSRGGSD 200 (288)
T ss_pred HHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhC-CCEEEEeCccccCCCCCEEEcCCCchH
Confidence 377889999999999887765 4433 32 1134556666653 79999999985 44679
Q ss_pred chHHHHHh-cC
Q 011289 93 FVKPLLQK-KG 102 (489)
Q Consensus 93 ~~~~~l~~-~G 102 (489)
++...+.. ++
T Consensus 201 ~tAal~A~~l~ 211 (288)
T cd04245 201 ITGAILARGFQ 211 (288)
T ss_pred HHHHHHHHHcC
Confidence 99999876 45
No 98
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=60.74 E-value=23 Score=33.46 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=43.0
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCC-CCchHHHHHhc
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGD-KDFVKPLLQKK 101 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~-~D~~~~~l~~~ 101 (489)
|||..|.|..++++.|+++. ++.+|...+. .++ .+ +.|.||.|=|-|... ...+.++++++
T Consensus 10 yDSFtyNLv~yl~~lg~~v~---V~rnd~~~~~-~~~-~~--~pd~iviSPGPG~P~d~G~~~~~i~~~ 71 (191)
T COG0512 10 YDSFTYNLVQYLRELGAEVT---VVRNDDISLE-LIE-AL--KPDAIVISPGPGTPKDAGISLELIRRF 71 (191)
T ss_pred ccchHHHHHHHHHHcCCceE---EEECCccCHH-HHh-hc--CCCEEEEcCCCCChHHcchHHHHHHHh
Confidence 79999999999999997765 4555522222 232 32 489999999888664 44478888875
No 99
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=60.68 E-value=33 Score=32.13 Aligned_cols=49 Identities=18% Similarity=0.122 Sum_probs=33.7
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMG 89 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G 89 (489)
+||-++.|..+|++.|+++..+ +.|...+ +.+.. . +.|.||.+||-+--
T Consensus 8 ~Dsft~nl~~~l~~~g~~v~v~---~~~~~~~-~~~~~-~--~~d~iils~GPg~p 56 (187)
T PRK08007 8 YDSFTWNLYQYFCELGADVLVK---RNDALTL-ADIDA-L--KPQKIVISPGPCTP 56 (187)
T ss_pred CCccHHHHHHHHHHCCCcEEEE---eCCCCCH-HHHHh-c--CCCEEEEcCCCCCh
Confidence 6999999999999999887653 3332112 11221 2 48999999998643
No 100
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=60.54 E-value=22 Score=33.12 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCeEEEEEee---cCCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011289 40 MLLAAAMQQHCKLIDLGIV---RDDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v---~Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
.|.+.|++.|++|.+++.- +.|.-.+...+.+++. ..+|.=|..-|+|+|
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGTGiG 70 (171)
T TIGR01119 17 EVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGTGVG 70 (171)
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHH
Confidence 4566788999999999972 2345566666666653 358999999999976
No 101
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=59.51 E-value=26 Score=31.61 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=36.0
Q ss_pred HHHHHHHhCCCeEEEEEeec---CCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011289 40 MLLAAAMQQHCKLIDLGIVR---DDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~---Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
.|.+.|++.|++|.+++.-. -|.-.+...+.+++. ..+|.-|..-|+|+|
T Consensus 16 ~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG 69 (143)
T TIGR01120 16 EIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICGTGIG 69 (143)
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcCCcHH
Confidence 45667789999999998632 234556666666553 358999999999976
No 102
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=59.33 E-value=20 Score=28.20 Aligned_cols=43 Identities=23% Similarity=0.405 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC
Q 011289 60 DDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG 102 (489)
Q Consensus 60 Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G 102 (489)
.|.+.|.++|.+...+..|++|.+||.-.|-+.+..+.-++.|
T Consensus 15 ~D~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~g 57 (71)
T PF10686_consen 15 TDHELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERG 57 (71)
T ss_pred ccHHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCC
Confidence 4778899999888776679999999998888888777777776
No 103
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=59.20 E-value=36 Score=31.84 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=32.3
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
+||-++.|..+|++.|+++. +++.+...+.+ +++ + ..|.||.+||-+
T Consensus 8 ~dsf~~nl~~~l~~~~~~~~---v~~~~~~~~~~-~~~-~--~~~~iilsgGP~ 54 (191)
T PRK06774 8 YDSFTYNLYQYFCELGTEVM---VKRNDELQLTD-IEQ-L--APSHLVISPGPC 54 (191)
T ss_pred CCchHHHHHHHHHHCCCcEE---EEeCCCCCHHH-HHh-c--CCCeEEEcCCCC
Confidence 58999999999999998876 44433211211 222 2 479999999884
No 104
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=59.06 E-value=35 Score=32.21 Aligned_cols=47 Identities=19% Similarity=0.081 Sum_probs=32.7
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
+||-.+.|..+|++.|+++..+..-..+.+.+ .+ . +.|.||.+||-+
T Consensus 8 ~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~----~~-~--~~d~iIlsgGP~ 54 (195)
T PRK07649 8 YDSFTFNLVQFLGELGQELVVKRNDEVTISDI----EN-M--KPDFLMISPGPC 54 (195)
T ss_pred CCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH----hh-C--CCCEEEECCCCC
Confidence 58999999999999998876544222223322 21 2 489999999974
No 105
>TIGR00391 hydA hydrogenase (NiFe) small subunit (hydA). Called (hupA/hydA/hupS/hoxK/vhtG) Involved in hydrogenase reactions performing different specific functions in different species eg (EC 1.12.2.1) in Desulfovibrio gigas,(EC 1.12.99.3) in Wolinella succinogenes and (EC 1.18.99.1) in E.coli and a number of other species and (EC 1.12.99.-) in the archea.
Probab=58.95 E-value=21 Score=37.18 Aligned_cols=127 Identities=9% Similarity=0.054 Sum_probs=66.4
Q ss_pred ccCCchHHHHHHHHccccccCCcEEEEEEEcCCCH-HHHHHHHHHhhhc-CCCcEEEEeCCCCCCCC--------CChHH
Q 011289 306 GPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDV-GKIKEVLRRWSDI-DKMDLILTLGGTGFTPR--------DVTPE 375 (489)
Q Consensus 306 ~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~-~~I~~~l~~~~~~-~~~DlVIttGG~G~t~~--------D~T~e 375 (489)
..|+..+.+.++|.+. +++.+..++.|.. +...+.+++.++. .+.|+++.-|++....+ .-..|
T Consensus 68 lL~s~~P~~~~~ll~~------isl~yhptlmaa~G~~ae~~l~~~~~~~~g~~ILvVEGaIp~~~~G~y~~~~g~~~~e 141 (365)
T TIGR00391 68 LLRSAHPTVENLILET------ISLEYHETLMAAFGHQAEENKHDAIEKYKGQYILVVEGSIPLGDNGIYCMVAGEPIVE 141 (365)
T ss_pred HhccCCCCHHHHHhcC------ceEEechHhHHhhHHHHHHHHHHHHhccCCCeEEEEeCCCCCCCCceeeeeCCcHHHH
Confidence 3466667777777765 5778777777654 2344555555432 25799999999955433 11233
Q ss_pred HHHHhhcccc--ccHHHHHHhccc-ccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHH
Q 011289 376 ATKELIERET--PGLLYVMMQESL-KVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPA 438 (489)
Q Consensus 376 av~~~~~~~l--~g~~e~~~~~~~-~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~ 438 (489)
.+.++.++.- --+..--.+=|+ +..|...-..++..++.+++|+++||.|..-..++..++.+
T Consensus 142 ~l~~~a~~A~aVIAvGtCAs~GGI~aa~pnptga~~v~~vi~~~pvinIPGCPp~Pe~i~~tl~~~ 207 (365)
T TIGR00391 142 HIRKAAEGAAAIIAIGTCSSWGGVQAAGPNPTGAVPLQKVIPDKPVINVPGCPPNPHNFLATVAYI 207 (365)
T ss_pred HHHHHhhcCCEEEEEeccccccCccCCCCCCCCCcchhHhcCCCCeEEeCCCCCCHHHHHHHHHHH
Confidence 3443333210 000000000011 11121110011223345688999999999888777766543
No 106
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=58.80 E-value=23 Score=31.92 Aligned_cols=113 Identities=11% Similarity=0.045 Sum_probs=67.4
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhcccccc
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETPG 387 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~g 387 (489)
|..|..+.+.|.+.+... |++|..++.-+.|..++...+.+.+....+|.=|..-|+|.+. +=+.+| .+|
T Consensus 8 DhaG~~lK~~l~~~L~~~-g~eV~D~G~~~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~--------siaANK-v~G 77 (141)
T PRK12613 8 DAHGNALKELIKSFLQEE-GYDIIDVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGP--------FMVATK-LKG 77 (141)
T ss_pred CcchHHHHHHHHHHHHHC-CCEEEEcCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCHhH--------hhhhhc-CCC
Confidence 455555555444444443 9999998876678888998888888767888888888888663 111221 122
Q ss_pred HHHHHHhcccccC-CCccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHH
Q 011289 388 LLYVMMQESLKVT-PFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 439 (489)
Q Consensus 388 ~~e~~~~~~~~~~-p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l 439 (489)
+.- .+-.. ..+. .+-..|+..|++|++--.....+.+.+--+|
T Consensus 78 IRa-----A~~~d~~~A~----~ar~hNnaNVl~lG~r~ig~~~a~~iv~~fL 121 (141)
T PRK12613 78 MVA-----AEVSDERSAY----MTRGHNNARMITMGAEIVGPELAKNIAKGFV 121 (141)
T ss_pred eEE-----EEECCHHHHH----HHHHHcCCcEEEECccccCHHHHHHHHHHHH
Confidence 110 00000 1111 1223588999999997666665555443333
No 107
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=58.58 E-value=24 Score=32.81 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCeEEEEEee---cCCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011289 40 MLLAAAMQQHCKLIDLGIV---RDDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v---~Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
.|.+.|++.|++|.+++.- +.|.-.+...+.+++. ..+|.-|..-|+|+|
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG 70 (171)
T PRK12615 17 AVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGTGVG 70 (171)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHH
Confidence 5667888999999999973 2345556666666653 358999999999976
No 108
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=58.51 E-value=22 Score=32.26 Aligned_cols=113 Identities=16% Similarity=0.106 Sum_probs=66.5
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEE----cCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhcc
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDV----VPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIER 383 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~----v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~ 383 (489)
|..+..+.+.|.+.+... |++|...+. -+||...+...+.+.+....+|.-|..-|+|.+- +=+.+|
T Consensus 8 DhaG~~lK~~l~~~L~~~-g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~--------siaANK 78 (148)
T TIGR02133 8 DHAGFEYKEALWLDLAAH-EPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGE--------AIAANK 78 (148)
T ss_pred CchhHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCCChhh--------eeeecc
Confidence 444555544444433333 999999886 2467888888888888767899999999999763 111221
Q ss_pred ccccHHHHHHhcccccC-CCccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHH
Q 011289 384 ETPGLLYVMMQESLKVT-PFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 439 (489)
Q Consensus 384 ~l~g~~e~~~~~~~~~~-p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l 439 (489)
.+|+.- .+-.. -.+. .+-..|+..|++|++--..-..+++.+--+|
T Consensus 79 -~~GiRA-----A~~~d~~sA~----~ar~hNnaNVl~lG~r~ig~~~a~~iv~~fl 125 (148)
T TIGR02133 79 -VKGARA-----ALAWDTASAG----RARLHNNANVVGAGMRMHGLEEAFRLVFEFL 125 (148)
T ss_pred -cCCeEE-----EEECCHHHHH----HHHHHcCCcEEEECCcccCHHHHHHHHHHHH
Confidence 122110 00000 0111 1223588999999998776666666544433
No 109
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=58.06 E-value=26 Score=32.64 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCeEEEEEee---cCCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011289 40 MLLAAAMQQHCKLIDLGIV---RDDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v---~Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
.|.+.|++.|++|.+++.- +.|.-.+...+.+++. ..+|.=|..-|||+|
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG 70 (171)
T PRK08622 17 AVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGTGVG 70 (171)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCcEEEEEcCCcHH
Confidence 4667788999999999973 3345667777776653 358999999999976
No 110
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=57.91 E-value=68 Score=29.06 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=50.5
Q ss_pred EEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCCh
Q 011289 294 ILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVT 373 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T 373 (489)
|+.+||.+..|--......|.. .+... .++.+....+-.+....+.+.++..+...+.|+|+...|+=-...+.+
T Consensus 3 i~~~GDSi~~g~~~~~~~~~~~-~l~~~----~~~~v~n~g~~G~~~~~~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~~ 77 (183)
T cd04501 3 VVCLGDSITYGYPVGPEASWVN-LLAEF----LGKEVINRGINGDTTSQMLVRFYEDVIALKPAVVIIMGGTNDIIVNTS 77 (183)
T ss_pred EEEEccccccCcCCCCcchHHH-HHHhh----cCCeEEecCcCCccHHHHHHHHHHHHHhcCCCEEEEEeccCccccCCC
Confidence 6788999987754322222333 33322 167888888888888887777766543458999998887654333334
Q ss_pred HHHHHH
Q 011289 374 PEATKE 379 (489)
Q Consensus 374 ~eav~~ 379 (489)
.+.+.+
T Consensus 78 ~~~~~~ 83 (183)
T cd04501 78 LEMIKD 83 (183)
T ss_pred HHHHHH
Confidence 444433
No 111
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=57.70 E-value=20 Score=33.52 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=32.3
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
+|+-++.|..+|++.|+++..+..-..+++ + ++ ++|.||.+||.+.
T Consensus 10 ~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~-------~-l~-~~d~iIi~gGp~~ 55 (190)
T PRK06895 10 HDSFTFNLVDLIRKLGVPMQVVNVEDLDLD-------E-VE-NFSHILISPGPDV 55 (190)
T ss_pred CCchHHHHHHHHHHcCCcEEEEECCccChh-------H-hc-cCCEEEECCCCCC
Confidence 477888899999999988765433222222 1 23 4899999999873
No 112
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=57.69 E-value=25 Score=35.58 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=42.4
Q ss_pred eCCeEEEEecCC-----cCcCCCCCCCCCCcE--EcChHHHHHHHHHhCCCeEEEEEeecCCHH----HHHHHHHHHHhc
Q 011289 7 RTPTIAVLSTGD-----ELVEPTTQCLDRGQI--RDSNRAMLLAAAMQQHCKLIDLGIVRDDEE----ELEKTLDNAFSA 75 (489)
Q Consensus 7 r~prV~iistGd-----El~~~g~~~~~~g~i--~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~----~i~~~l~~~~~~ 75 (489)
+++|++|+.+|+ .|+..-+...-+.+| .=||.+-+..+.++.|..+..+.+-+++.+ ++.+.|++.
T Consensus 92 ~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~--- 168 (289)
T PRK13010 92 QRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETS--- 168 (289)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHh---
Confidence 678999999996 111110000001222 235666667888888887766554444433 344444432
Q ss_pred CCCEEEEeC
Q 011289 76 GIDILLTSG 84 (489)
Q Consensus 76 ~~DlvittG 84 (489)
++|+|+..|
T Consensus 169 ~~Dlivlag 177 (289)
T PRK13010 169 GAELVVLAR 177 (289)
T ss_pred CCCEEEEeh
Confidence 589998888
No 113
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=57.20 E-value=44 Score=33.65 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHH---------HHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC-CeEE
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELE---------KTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYF 106 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~---------~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G-~~~f 106 (489)
-+..++..|+.+|+++..+..-++..+... +.+.+.+. ++|+|+.+=...+ +..+.++.+. ..++
T Consensus 162 iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~-~aDiVint~P~~i----i~~~~l~~~k~~ali 236 (287)
T TIGR02853 162 TGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVA-EIDIVINTIPALV----LTADVLSKLPKHAVI 236 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhc-cCCEEEECCChHH----hCHHHHhcCCCCeEE
Confidence 467788888899988765544333222111 12445555 5999998643322 1245566665 6778
Q ss_pred eeeeecCCC
Q 011289 107 NKVCMKPGK 115 (489)
Q Consensus 107 ~~v~~kPGk 115 (489)
-.++.+||.
T Consensus 237 IDlas~Pg~ 245 (287)
T TIGR02853 237 IDLASKPGG 245 (287)
T ss_pred EEeCcCCCC
Confidence 888889987
No 114
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=56.17 E-value=28 Score=31.39 Aligned_cols=108 Identities=13% Similarity=0.099 Sum_probs=63.0
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEc---CCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccc
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVV---PDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERE 384 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v---~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~ 384 (489)
|..+..+.+.|.+.+... |++|..++.- +-|..++...+.+.+....+|.-|..-|||.+- +=+.+|
T Consensus 7 DhaG~~lK~~l~~~L~~~-g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~--------siaANK- 76 (143)
T TIGR01120 7 DHAGFILKEEIKAFLVER-GVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICGTGIGM--------SIAANK- 76 (143)
T ss_pred CcchHHHHHHHHHHHHHC-CCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcCCcHHH--------HHHHhc-
Confidence 555666665554444444 9999998762 346777777777777666899999999999663 222222
Q ss_pred cccHHHHHHhcccccCC-CccccccceeEECCEEEEEcCCCHHHHHHHHHH
Q 011289 385 TPGLLYVMMQESLKVTP-FAMLSRSAAGIRGSTLIINMPGNPNAVAECMEA 434 (489)
Q Consensus 385 l~g~~e~~~~~~~~~~p-~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ 434 (489)
.||+.- .+-..+ .+. .+-..|+..|++|++--.....+.+.
T Consensus 77 ~~GIra-----a~~~d~~~A~----~ar~hNnaNvl~lG~r~~g~~~a~~i 118 (143)
T TIGR01120 77 FAGIRA-----ALCSEPYMAQ----MSRLHNDANVLCLGERVVGLELAKSI 118 (143)
T ss_pred CCCeEE-----EEECCHHHHH----HHHHhcCCcEEEECcceeCHHHHHHH
Confidence 222210 000011 111 23346889999999875554444443
No 115
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=56.15 E-value=18 Score=32.48 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=64.9
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcC---CCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccc
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVP---DDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERE 384 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~---Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~ 384 (489)
|.++..+.+.|.+.+... |++|..++.-. .|..++...+.+.+....+|.-|+.-|+|.+- +=+.++
T Consensus 7 Dh~g~~lK~~i~~~L~~~-g~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~GIliCgtGiG~--------~iaANK- 76 (140)
T PF02502_consen 7 DHAGFELKEAIKEYLEEK-GYEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADRGILICGTGIGM--------SIAANK- 76 (140)
T ss_dssp -GGGHHHHHHHHHHHHHT-TEEEEEESESSTST--HHHHHHHHHHHHHTTSSSEEEEEESSSHHH--------HHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCeEEEEcCCChhh--------hhHhhc-
Confidence 455555555444444444 99999999877 67778888888887777899999999999652 222222
Q ss_pred cccHHHHHHhcccccCC-CccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHHHH
Q 011289 385 TPGLLYVMMQESLKVTP-FAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKH 441 (489)
Q Consensus 385 l~g~~e~~~~~~~~~~p-~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l~~ 441 (489)
.||+.- .+-..+ .+. .+...|+..|++|++--.....+.+.+--+|..
T Consensus 77 ~~GIrA-----a~~~d~~~A~----~ar~hNdaNVL~lG~~~~~~~~a~~i~~~~l~t 125 (140)
T PF02502_consen 77 VPGIRA-----ALCSDPYSAK----MAREHNDANVLCLGARVIGEELAKEIVDAFLNT 125 (140)
T ss_dssp STT--E-----EE-SSHHHHH----HHHHTT--SEEEEETTTSHHHHHHHHHHHHHHG
T ss_pred CCCEEE-----EeeCCHHHHH----HHHHhcCCcEEEechhhccHHHHHHHHHHHhCC
Confidence 233210 000111 111 233468899999998766655555544334433
No 116
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=55.99 E-value=48 Score=29.38 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=40.5
Q ss_pred HHHHccccccCCcEEEEEEE--cCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhh
Q 011289 316 SVVNSSSEKLGGAKVVATDV--VPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELI 381 (489)
Q Consensus 316 ~~l~~~~~~~~G~~v~~~~~--v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~ 381 (489)
..|++. ++|+++.++.+ +.|=+-.-++.|++ ++||+||+-|=.|++..|...--.++++
T Consensus 22 ~~lk~~---~~~~~i~R~TVPGIKdlpvaakrLiee----eGCd~Vi~lG~~G~t~~Dk~~~~~aS~G 82 (154)
T COG1731 22 DELKKL---LPGIKIKRYTVPGIKDLPVAAKRLIEE----EGCDIVIALGWVGPTEKDKYSYLAASIG 82 (154)
T ss_pred HHHHhh---CCCCceEEeeCCCcccChHHHHHHHHh----cCCcEEEEccCcCcchhhHHHHHHHhhH
Confidence 445554 34777777764 45555555555543 5999999999999999998665555543
No 117
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=55.97 E-value=14 Score=34.30 Aligned_cols=52 Identities=23% Similarity=0.171 Sum_probs=35.3
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCC
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKD 92 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D 92 (489)
+|++..+|...+++.|.++..+..- .+.+...+ .+. ++|.||++||.+- .+|
T Consensus 6 ~~~~~~~l~~~l~~~~~~~~v~~~~-~~~~~~~~----~~~-~~d~iii~Gg~~~-~~d 57 (192)
T PF00117_consen 6 GDSFTHSLVRALRELGIDVEVVRVD-SDFEEPLE----DLD-DYDGIIISGGPGS-PYD 57 (192)
T ss_dssp SHTTHHHHHHHHHHTTEEEEEEETT-GGHHHHHH----HTT-TSSEEEEECESSS-TTS
T ss_pred CHHHHHHHHHHHHHCCCeEEEEECC-Cchhhhhh----hhc-CCCEEEECCcCCc-ccc
Confidence 4789999999999999776544322 23333322 233 5999999999875 444
No 118
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=55.56 E-value=35 Score=35.79 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCeEEEEEeecC--CHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 40 MLLAAAMQQHCKLIDLGIVRD--DEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~D--d~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
-+...|++.|.++..+.-+.- +.+.+.+.++.+.+.++|.||-.||=|+
T Consensus 50 ~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~ 100 (383)
T PRK09860 50 DVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSP 100 (383)
T ss_pred HHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 577788888988766654432 3466777777776667999998887654
No 119
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=55.48 E-value=27 Score=31.77 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=39.6
Q ss_pred HHHHHHHccccccCCcEEEEEEEc----CCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCC
Q 011289 313 RAVSVVNSSSEKLGGAKVVATDVV----PDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 369 (489)
Q Consensus 313 ~l~~~l~~~~~~~~G~~v~~~~~v----~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~ 369 (489)
.+.+.|++. |+++...+.. ++|...+...+...+....+|+.|+..|||.|.
T Consensus 17 ~I~~~Lk~~-----g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTGiG~ 72 (151)
T COG0698 17 IIIDHLKSK-----GYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGTGIGM 72 (151)
T ss_pred HHHHHHHHC-----CCEEEeccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCChhH
Confidence 455667776 9999986544 466777777777777645799999999999874
No 120
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=55.41 E-value=37 Score=33.34 Aligned_cols=51 Identities=27% Similarity=0.387 Sum_probs=37.2
Q ss_pred CcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhc
Q 011289 327 GAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIE 382 (489)
Q Consensus 327 G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~ 382 (489)
|+++..+..++ +.++..+.++++.+ +++|+||++| ....|.+.++..+.-+
T Consensus 31 gv~~~~~e~~~-~~~~~~~~i~~~~~-~g~dlIi~~g---~~~~~~~~~vA~~~p~ 81 (258)
T cd06353 31 GVEVTYVENVP-EGADAERVLRELAA-QGYDLIFGTS---FGFMDAALKVAKEYPD 81 (258)
T ss_pred CCeEEEEecCC-chHhHHHHHHHHHH-cCCCEEEECc---hhhhHHHHHHHHHCCC
Confidence 88888877776 56888999999886 5899999955 4445555555555544
No 121
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=55.08 E-value=34 Score=31.10 Aligned_cols=97 Identities=14% Similarity=0.082 Sum_probs=57.2
Q ss_pred HHHHHHHhCCCeEEEEEee----cCCHHHHHHHHHHHHh-cCCCEEEEeCCCcCCCCCchHHHHHhcCCeEEeeeeecCC
Q 011289 40 MLLAAAMQQHCKLIDLGIV----RDDEEELEKTLDNAFS-AGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPG 114 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v----~Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G~~D~~~~~l~~~G~~~f~~v~~kPG 114 (489)
.|...|++.|++|.+++.- +.|.-.+...+.+.+. ..+|.=|..-|+|.| +.-+..+. .||.
T Consensus 17 ~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG----~siaANK~-----~GIR---- 83 (148)
T PRK05571 17 EIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIG----MSIAANKV-----KGIR---- 83 (148)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHH----HHHHHhcC-----CCeE----
Confidence 4566788899999999862 3356667777777654 348998988899876 23333332 2222
Q ss_pred CceeeEEEccCCCCc--cccccEEEEEcCCChHHHHHHHHH
Q 011289 115 KPLTFAEINIKPTDD--VMVNKILAFGLPGNPVSCIVCFHL 153 (489)
Q Consensus 115 kp~~~a~~~~~~~~~--~~~~~~~v~~LPGnP~aa~~~~~~ 153 (489)
.|...+...+. -.+++.=|++|+|.-.+-..+.+.
T Consensus 84 ----AA~~~d~~~A~~ar~hNnaNVL~lG~r~ig~~~a~~i 120 (148)
T PRK05571 84 ----AALCHDTYSAHLAREHNNANVLALGARVIGPELAKDI 120 (148)
T ss_pred ----EEEECCHHHHHHHHHhcCCcEEEECccccCHHHHHHH
Confidence 12221100000 012245589999988777665543
No 122
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=54.97 E-value=32 Score=31.36 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=36.7
Q ss_pred HHHHHHHh--CCCeEEEEEee---cCCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011289 40 MLLAAAMQ--QHCKLIDLGIV---RDDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~--~G~~~~~~~~v---~Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
.|.+.|++ .|++|++++.- +.|.-.+...+.+++. ..+|.-|..-|+|+|
T Consensus 19 ~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~GIliCGtGiG 74 (151)
T PTZ00215 19 EIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGSGIG 74 (151)
T ss_pred HHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEEcCCcHH
Confidence 45667889 99999999862 3455666666666653 358988888888876
No 123
>PRK05637 anthranilate synthase component II; Provisional
Probab=54.68 E-value=20 Score=34.25 Aligned_cols=47 Identities=21% Similarity=0.156 Sum_probs=32.8
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
+|++.+.|..+|++.|+++. +++.|.+ + +.+.. .+.|.||.+||-+-
T Consensus 10 ~dsf~~nl~~~l~~~g~~~~---v~~~~~~-~-~~l~~---~~~~~iIlsgGPg~ 56 (208)
T PRK05637 10 HDSFVYNLVDAFAVAGYKCT---VFRNTVP-V-EEILA---ANPDLICLSPGPGH 56 (208)
T ss_pred CcCHHHHHHHHHHHCCCcEE---EEeCCCC-H-HHHHh---cCCCEEEEeCCCCC
Confidence 47999999999999998775 4444421 1 22221 24899999999874
No 124
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=54.56 E-value=29 Score=33.33 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=45.1
Q ss_pred CcEEcChHHHHHHHHHhCCCeEEEEEe-ecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 31 GQIRDSNRAMLLAAAMQQHCKLIDLGI-VRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 31 g~i~dsn~~~l~a~l~~~G~~~~~~~~-v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
|.+.|--..++..+|+..|++++++|. +| ++.+.+++.+. ++|+|..|.-.... ...+++.++.+
T Consensus 98 gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp--~e~~v~~~~~~---~~~~V~lS~~~~~~-~~~~~~~i~~L 163 (213)
T cd02069 98 GDVHDIGKNLVGVILSNNGYEVIDLGVMVP--IEKILEAAKEH---KADIIGLSGLLVPS-LDEMVEVAEEM 163 (213)
T ss_pred CchhHHHHHHHHHHHHhCCCEEEECCCCCC--HHHHHHHHHHc---CCCEEEEccchhcc-HHHHHHHHHHH
Confidence 334455557899999999999999985 33 56677777654 59999998765533 33345555544
No 125
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=54.04 E-value=32 Score=31.36 Aligned_cols=109 Identities=12% Similarity=0.068 Sum_probs=64.1
Q ss_pred CCchHHHHHHHHccccc--cCCcEEEEEEE---cCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhc
Q 011289 308 DRSGPRAVSVVNSSSEK--LGGAKVVATDV---VPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIE 382 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~--~~G~~v~~~~~---v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~ 382 (489)
|..|..+.+.|.+.+.. . |++|..++. -+.|..++...+.+.+....+|.-|..-|+|.+. +=+.+
T Consensus 10 DhaG~~lK~~l~~~L~~~~~-g~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~GIliCGtGiG~--------siaAN 80 (151)
T PTZ00215 10 DHAGFDLKNEIIDYIKNKGK-EYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGSGIGI--------SIAAN 80 (151)
T ss_pred CCchHHHHHHHHHHHHhccC-CCEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEEcCCcHHH--------HHHHh
Confidence 45555555554444444 3 999999885 3457888888888888666889888888998653 21222
Q ss_pred cccccHHHHHHhcccccCC-CccccccceeEECCEEEEEcCCCHHHHHHHHHHH
Q 011289 383 RETPGLLYVMMQESLKVTP-FAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL 435 (489)
Q Consensus 383 ~~l~g~~e~~~~~~~~~~p-~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i 435 (489)
| .||+. ..+-..+ .+. .+-..|+..|++|++--.....+.+.+
T Consensus 81 K-~~GIR-----Aa~~~d~~~A~----~ar~hNnaNVL~lGar~ig~~~a~~iv 124 (151)
T PTZ00215 81 K-VKGIR-----CALCHDHYTAR----MSRQHNNANVLAFGGRTTGIEVAKEII 124 (151)
T ss_pred c-CCCeE-----EEEECCHHHHH----HHHHhcCCcEEEECccccCHHHHHHHH
Confidence 2 12211 0000011 111 223358899999998765555555443
No 126
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=53.92 E-value=33 Score=35.93 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCeEEEEEeecCC--HHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDD--EEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd--~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
--+.+.|++.|.++..+.-+..| .+.+.+.++.+.+.++|+||-.||=|+
T Consensus 47 ~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSv 98 (379)
T TIGR02638 47 DKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSP 98 (379)
T ss_pred HHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 45677888889888777544333 467777777776667999998888765
No 127
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=53.80 E-value=31 Score=32.13 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=64.4
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEE---cCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccc
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDV---VPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERE 384 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~---v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~ 384 (489)
|..+..+.+.|.+.+... |++|..++. -+.|..++...+.+.+....+|.-|..-|+|.+. +=+.++
T Consensus 8 DhaG~~lK~~l~~~L~~~-G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGTGiG~--------siaANK- 77 (171)
T TIGR01119 8 DHIVTDVKMEVSEFLKSK-GYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGTGVGI--------NNAVNK- 77 (171)
T ss_pred CCchHHHHHHHHHHHHHC-CCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHH--------HHHHhc-
Confidence 445555554444443333 999999886 3456778888888888666789999999999663 222222
Q ss_pred cccHHHHHHhcccccCC-CccccccceeEECCEEEEEcCCCHHHHHHHHHHH
Q 011289 385 TPGLLYVMMQESLKVTP-FAMLSRSAAGIRGSTLIINMPGNPNAVAECMEAL 435 (489)
Q Consensus 385 l~g~~e~~~~~~~~~~p-~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~i 435 (489)
.||+.- .+-..+ .+. .+-..|+..|++|++--.....+.+.+
T Consensus 78 v~GIRA-----Al~~d~~sA~----~ar~hNnaNVL~lGarvig~e~a~~Iv 120 (171)
T TIGR01119 78 VPGVRS-----ALVRDMTSAL----YAKEELNANVIGFGGAIIGKLLMFDII 120 (171)
T ss_pred CCCeEE-----EEeCCHHHHH----HHHHhcCCcEEEECccccCHHHHHHHH
Confidence 223210 000011 111 233468899999999766555555443
No 128
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=53.42 E-value=36 Score=32.17 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=45.0
Q ss_pred CcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 31 GQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 31 g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
|...|---.++..+++..|++++++|.--- .+.+.+++++. ++|+|-.|.-...... .+++.++.+
T Consensus 94 gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp-~e~~v~~~~~~---~pd~v~lS~~~~~~~~-~~~~~i~~l 159 (197)
T TIGR02370 94 GDVHDIGKNIVVTMLRANGFDVIDLGRDVP-IDTVVEKVKKE---KPLMLTGSALMTTTMY-GQKDINDKL 159 (197)
T ss_pred CchhHHHHHHHHHHHHhCCcEEEECCCCCC-HHHHHHHHHHc---CCCEEEEccccccCHH-HHHHHHHHH
Confidence 344566668999999999999999884322 46677776654 6999999885444333 345555544
No 129
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=52.98 E-value=49 Score=31.74 Aligned_cols=64 Identities=23% Similarity=0.410 Sum_probs=46.1
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcC---hHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEe
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDS---NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTS 83 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~ds---n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlvitt 83 (489)
..|+|+++|.|- +-+ +.+.+..|. .+-++++.++..|+++..++|+- +++++. .|+||.-
T Consensus 136 ~ep~VaVlSgGR-lgD-----lGR~~~VDrtladgEfva~~~k~~g~~v~H~~ILI----------Eealkd-gnvIia~ 198 (256)
T COG4002 136 IEPKVAVLSGGR-LGD-----LGRNKEVDRTLADGEFVAEHFKGNGVDVIHYGILI----------EEALKD-GNVIIAV 198 (256)
T ss_pred CCcceEEecCCc-chh-----ccCcchhhhhhhchHHHHHHHhccCceeEEeeeEH----------HHHhhc-CCEEEEe
Confidence 579999999883 222 333344443 56799999999999999999974 445543 5999987
Q ss_pred CCCc
Q 011289 84 GGVS 87 (489)
Q Consensus 84 GG~s 87 (489)
-|.+
T Consensus 199 dGIt 202 (256)
T COG4002 199 DGIT 202 (256)
T ss_pred cCcc
Confidence 7764
No 130
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=52.87 E-value=31 Score=32.12 Aligned_cols=60 Identities=15% Similarity=0.116 Sum_probs=43.0
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEE---cCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDV---VPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~---v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
|.++..+.+.|.+.+... |++|...+. =+.|..++...+.+.+....+|.-|..-|||.+
T Consensus 8 DhaG~~lK~~l~~~L~~~-G~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG 70 (171)
T PRK08622 8 DHIVTDEKMAVSDYLKSK-GHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGTGVG 70 (171)
T ss_pred CcchHHHHHHHHHHHHHC-CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCcEEEEEcCCcHH
Confidence 445555554444444333 999999887 345677888888888866688999999999976
No 131
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=51.73 E-value=53 Score=30.70 Aligned_cols=61 Identities=21% Similarity=0.136 Sum_probs=37.0
Q ss_pred cCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCC-CCCCChHHHHHHh
Q 011289 307 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF-TPRDVTPEATKEL 380 (489)
Q Consensus 307 ~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~-t~~D~T~eav~~~ 380 (489)
.|+-+..+.+.|++. |+++. +++.+...+. .+.. ..+|.||.+||-|- ..+....+.+.++
T Consensus 8 ~dsft~~~~~~l~~~-----g~~v~---v~~~~~~~~~-~~~~----~~~d~iilsgGpg~p~~~~~~~~~i~~~ 69 (188)
T TIGR00566 8 YDSFTYNLVQYFCEL-----GAEVV---VKRNDSLTLQ-EIEA----LLPLLIVISPGPCTPNEAGISLEAIRHF 69 (188)
T ss_pred CcCHHHHHHHHHHHc-----CCceE---EEECCCCCHH-HHHh----cCCCEEEEcCCCCChhhcchhHHHHHHh
Confidence 477778889999988 87765 4553321121 2222 25898999999853 3333444555554
No 132
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=51.40 E-value=32 Score=32.03 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=42.3
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEc---CCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVV---PDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v---~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
|..|..+.+.|.+.+... |++|..++.- +.|..++...+.+.+....+|.-|...|||.+
T Consensus 8 DhaG~~lK~~l~~~L~~~-G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG 70 (171)
T PRK12615 8 DHIVTNEKMAVSDFLKSK-GYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGTGVG 70 (171)
T ss_pred CchhHHHHHHHHHHHHHC-CCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHH
Confidence 445555554444444333 9999998862 45677788888888766688999999999966
No 133
>COG1740 HyaA Ni,Fe-hydrogenase I small subunit [Energy production and conversion]
Probab=51.07 E-value=32 Score=35.26 Aligned_cols=110 Identities=18% Similarity=0.224 Sum_probs=60.1
Q ss_pred cChHHHHHHHHHhCCCeEEEEEee-cCCHHHHHHHHHHHHhc--CCCEEEEeCCCcCCCC--------CchHHHHHhcC-
Q 011289 35 DSNRAMLLAAAMQQHCKLIDLGIV-RDDEEELEKTLDNAFSA--GIDILLTSGGVSMGDK--------DFVKPLLQKKG- 102 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v-~Dd~~~i~~~l~~~~~~--~~DlvittGG~s~G~~--------D~~~~~l~~~G- 102 (489)
+|..|.+..++.++ +.+.+...+ .-.-....+.+.+++.+ +-+|++.=|++..++. --..+.++++.
T Consensus 68 rs~~P~~~~li~~~-IsL~Yhetlmaa~G~~aee~l~~~i~~~kg~yILvVEG~v~~~~~G~y~~vgg~~~~e~l~~aA~ 146 (355)
T COG1740 68 RSEHPTANDLILEL-ISLEYHETLMAASGTQAEELLEDAILKYKGKYILVVEGAVPLGENGMYCIVGGEPFKEILRKAAE 146 (355)
T ss_pred ccCCCCHHHHHHHH-HhhhhhhhhhhhcchhHHHHHHHHHHhcCCceEEEEeCCccCCCCceEEEEcChhHHHHHHHHhh
Confidence 44445566666665 444444332 22233344555555542 4689999999999862 22355555543
Q ss_pred ---CeEEe-------ee-e--ecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHH
Q 011289 103 ---TIYFN-------KV-C--MKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLY 154 (489)
Q Consensus 103 ---~~~f~-------~v-~--~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~ 154 (489)
-++-. +| + ..|+....+..+. .+++||.+||.|..--..+-.+
T Consensus 147 ~A~aIiAvGtCAs~GgI~AA~pnps~a~~i~ev~---------~~kpVINiPGCPp~pd~iv~tl 202 (355)
T COG1740 147 GASAIIAVGTCASWGGIQAAKPNPTGAGPLSEVI---------KDKPVINIPGCPPNPDWIVATL 202 (355)
T ss_pred cCceEEEEecccccCCeeccCCCCCCcccceecc---------cCCceeeCCCCCCCchhHHHHH
Confidence 23322 22 2 2333333333332 2589999999998766555444
No 134
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=50.72 E-value=77 Score=29.40 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=55.4
Q ss_pred EEEEeCCcccCCCccCCchH---HHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCC
Q 011289 293 AILTVSDTVASGAGPDRSGP---RAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTP 369 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~D~n~~---~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~ 369 (489)
-|+..||.+..|...+.... .+.+.+... ..+...++-.|.-....+.+.+.+...+.|+||+..|+--..
T Consensus 12 ~iv~~GDSit~G~~~~~~~~w~~~l~~~l~~~------~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~ 85 (191)
T PRK10528 12 TLLILGDSLSAGYRMPASAAWPALLNDKWQSK------TSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGL 85 (191)
T ss_pred EEEEEeCchhhcCCCCccCchHHHHHHHHhhC------CCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCc
Confidence 57889999988754433322 344444433 358888999999888888887776534789999999887655
Q ss_pred CCChHHHHHH
Q 011289 370 RDVTPEATKE 379 (489)
Q Consensus 370 ~D~T~eav~~ 379 (489)
..++.+.+.+
T Consensus 86 ~~~~~~~~~~ 95 (191)
T PRK10528 86 RGFPPQQTEQ 95 (191)
T ss_pred cCCCHHHHHH
Confidence 5555544443
No 135
>PLN02714 thiamin pyrophosphokinase
Probab=50.60 E-value=34 Score=33.27 Aligned_cols=66 Identities=20% Similarity=0.154 Sum_probs=49.7
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhc------CCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSA------GIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~------~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
.||-++-..+++++.|.++..+..-+|+ .++..+|+.++++ +++-|+..|++| |+.|++-..+.-+
T Consensus 62 fDSi~~e~~~~~~~~~~~i~~~~~eKD~-TD~e~Al~~~~~~~~~~~~~~~~I~v~Ga~G-GRlDH~laNi~~L 133 (229)
T PLN02714 62 MDSIRPEVLDFYSNLGTKIVDESHDQDT-TDLHKCIAYIRDSTPDLDKSNLCILVLGALG-GRFDHEAGNINVL 133 (229)
T ss_pred ccCCCHHHHHHHHHCCCEEEECCCCccc-CHHHHHHHHHHHhccccccCCceEEEEcccC-CchHHHHHHHHHH
Confidence 5888888888999999988777777765 4456666666532 246788889997 6899998877765
No 136
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=50.50 E-value=25 Score=32.57 Aligned_cols=68 Identities=26% Similarity=0.247 Sum_probs=42.5
Q ss_pred cCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCC-CChHHHHHHhhcccc
Q 011289 307 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPR-DVTPEATKELIERET 385 (489)
Q Consensus 307 ~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~-D~T~eav~~~~~~~l 385 (489)
.|++...+.+.+++. |+++.-+.+- .+.+.+.+ . ++ ++|.||.+||.+--.| +...+.++.+.+..+
T Consensus 6 ~~~~~~~l~~~l~~~-----~~~~~v~~~~-~~~~~~~~---~-~~--~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~ 73 (192)
T PF00117_consen 6 GDSFTHSLVRALREL-----GIDVEVVRVD-SDFEEPLE---D-LD--DYDGIIISGGPGSPYDIEGLIELIREARERKI 73 (192)
T ss_dssp SHTTHHHHHHHHHHT-----TEEEEEEETT-GGHHHHHH---H-TT--TSSEEEEECESSSTTSHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHC-----CCeEEEEECC-Cchhhhhh---h-hc--CCCEEEECCcCCccccccccccccccccccce
Confidence 356778899999999 8665443333 33344433 2 33 8999999999987664 344445555554344
Q ss_pred c
Q 011289 386 P 386 (489)
Q Consensus 386 ~ 386 (489)
|
T Consensus 74 P 74 (192)
T PF00117_consen 74 P 74 (192)
T ss_dssp E
T ss_pred E
Confidence 3
No 137
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=49.99 E-value=64 Score=29.81 Aligned_cols=66 Identities=17% Similarity=0.056 Sum_probs=39.8
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccccc
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETP 386 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~ 386 (489)
|.-...+.++|++. |+++..+..-.++ +.+ ... + ++|.||.+||-|...+|...+.+.+.....+|
T Consensus 8 ~~~~~~~~~~l~~~-----G~~~~~~~~~~~~-~~~----~~~-~--~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~P 73 (184)
T cd01743 8 DSFTYNLVQYLREL-----GAEVVVVRNDEIT-LEE----LEL-L--NPDAIVISPGPGHPEDAGISLEIIRALAGKVP 73 (184)
T ss_pred CccHHHHHHHHHHc-----CCceEEEeCCCCC-HHH----Hhh-c--CCCEEEECCCCCCcccchhHHHHHHHHhcCCC
Confidence 33446788899988 9877765553332 222 122 3 69999999888765555444445454444444
No 138
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=49.89 E-value=85 Score=31.27 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=41.0
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcC-hHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDS-NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~ds-n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
+.+|+|++.|+ .....+ +- ....+...|++.|+++..+..-.+. .+.++. .+.|+|+..-+.
T Consensus 4 ~~~v~~~~g~~---------~~~~~~-~~~s~~~i~~al~~~g~~v~~i~~~~~~----~~~~~~---~~~D~v~~~~~g 66 (304)
T PRK01372 4 FGKVAVLMGGT---------SAEREV-SLNSGAAVLAALREAGYDAHPIDPGEDI----AAQLKE---LGFDRVFNALHG 66 (304)
T ss_pred CcEEEEEeCCC---------CCCceE-eHHhHHHHHHHHHHCCCEEEEEecCcch----HHHhcc---CCCCEEEEecCC
Confidence 34899888652 111111 22 4477888889999998876433332 222221 248999976332
Q ss_pred cCCCCCchHHHHH
Q 011289 87 SMGDKDFVKPLLQ 99 (489)
Q Consensus 87 s~G~~D~~~~~l~ 99 (489)
..+...++...++
T Consensus 67 ~~~~~~~~~~~le 79 (304)
T PRK01372 67 RGGEDGTIQGLLE 79 (304)
T ss_pred CCCCccHHHHHHH
Confidence 2344444444443
No 139
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=49.68 E-value=41 Score=30.54 Aligned_cols=113 Identities=14% Similarity=0.073 Sum_probs=66.5
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEE---c-CCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhcc
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDV---V-PDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIER 383 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~---v-~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~ 383 (489)
|..|..+.+.|.+.+... |++|..++. - +.|..++...+.+.+....+|.=|..-|+|.+- +=+.+|
T Consensus 8 DhaG~~lK~~l~~~L~~~-g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~--------siaANK 78 (148)
T PRK05571 8 DHAGFELKEEIIEHLEEL-GHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGM--------SIAANK 78 (148)
T ss_pred CCchHHHHHHHHHHHHHC-CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHH--------HHHHhc
Confidence 445555555444444433 999999886 2 457778888888888766789999989999653 222222
Q ss_pred ccccHHHHHHhcccccCC-CccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHH
Q 011289 384 ETPGLLYVMMQESLKVTP-FAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 439 (489)
Q Consensus 384 ~l~g~~e~~~~~~~~~~p-~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l 439 (489)
.||+.- .+-..+ .+. .+-..|+..|++|+|--.....+.+.+--||
T Consensus 79 -~~GIRA-----A~~~d~~~A~----~ar~hNnaNVL~lG~r~ig~~~a~~iv~~fl 125 (148)
T PRK05571 79 -VKGIRA-----ALCHDTYSAH----LAREHNNANVLALGARVIGPELAKDIVDAFL 125 (148)
T ss_pred -CCCeEE-----EEECCHHHHH----HHHHhcCCcEEEECccccCHHHHHHHHHHHH
Confidence 222210 000011 111 2334688999999997666655555443333
No 140
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=49.44 E-value=22 Score=31.99 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=28.3
Q ss_pred HHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC
Q 011289 314 AVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 364 (489)
Q Consensus 314 l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG 364 (489)
..+.+++. |+++..+.+...+.+++.+.|+ ++|+|+.+||
T Consensus 5 ~~~~f~~~-----g~~v~~l~~~~~~~~~~~~~i~------~ad~I~~~GG 44 (154)
T PF03575_consen 5 FRKAFRKL-----GFEVDQLDLSDRNDADILEAIR------EADAIFLGGG 44 (154)
T ss_dssp HHHHHHHC-----T-EEEECCCTSCGHHHHHHHHH------HSSEEEE--S
T ss_pred HHHHHHHC-----CCEEEEEeccCCChHHHHHHHH------hCCEEEECCC
Confidence 44667777 9998888888877776665554 5899999997
No 141
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=49.32 E-value=47 Score=29.37 Aligned_cols=61 Identities=10% Similarity=0.082 Sum_probs=42.5
Q ss_pred ceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC
Q 011289 289 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 364 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG 364 (489)
++|+-+-++|.- ..|.-...++.+|+.. |++|.....--. ++++.++..+ .++|+|..|+=
T Consensus 2 ~~~v~~a~~g~D-----~Hd~g~~iv~~~l~~~-----GfeVi~lg~~~s-~e~~v~aa~e----~~adii~iSsl 62 (132)
T TIGR00640 2 RPRILVAKMGQD-----GHDRGAKVIATAYADL-----GFDVDVGPLFQT-PEEIARQAVE----ADVHVVGVSSL 62 (132)
T ss_pred CCEEEEEeeCCC-----ccHHHHHHHHHHHHhC-----CcEEEECCCCCC-HHHHHHHHHH----cCCCEEEEcCc
Confidence 567777777553 4455567888899999 999999887643 3444444433 38999999873
No 142
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=49.31 E-value=1.1e+02 Score=28.17 Aligned_cols=77 Identities=26% Similarity=0.358 Sum_probs=46.4
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
.++|+++.-.+.+. -+..+.+-.|.++..+.. ++++++.+.++++..+++|+||-.+
T Consensus 77 ~~~Iavv~~~~~~~------------------~~~~~~~ll~~~i~~~~~--~~~~e~~~~i~~~~~~G~~viVGg~--- 133 (176)
T PF06506_consen 77 GPKIAVVGYPNIIP------------------GLESIEELLGVDIKIYPY--DSEEEIEAAIKQAKAEGVDVIVGGG--- 133 (176)
T ss_dssp TSEEEEEEESS-SC------------------CHHHHHHHHT-EEEEEEE--SSHHHHHHHHHHHHHTT--EEEESH---
T ss_pred CCcEEEEecccccH------------------HHHHHHHHhCCceEEEEE--CCHHHHHHHHHHHHHcCCcEEECCH---
Confidence 36777777665542 133344444777766544 7789999999999887899888555
Q ss_pred CCCCCchHHHHHhcCCeEEeeeeecCCC
Q 011289 88 MGDKDFVKPLLQKKGTIYFNKVCMKPGK 115 (489)
Q Consensus 88 ~G~~D~~~~~l~~~G~~~f~~v~~kPGk 115 (489)
++.+..+++| ++.+-+.+|+
T Consensus 134 -----~~~~~A~~~g---l~~v~i~sg~ 153 (176)
T PF06506_consen 134 -----VVCRLARKLG---LPGVLIESGE 153 (176)
T ss_dssp -----HHHHHHHHTT---SEEEESS--H
T ss_pred -----HHHHHHHHcC---CcEEEEEecH
Confidence 3566677777 3445555543
No 143
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=49.11 E-value=34 Score=31.43 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=31.1
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
++|...+...|++.|+++..+..-. +.+ ..-++ ++|.||.+||.+
T Consensus 8 ~~~~~~~~~~l~~~G~~~~~~~~~~-~~~------~~~~~-~~dgvIl~Gg~~ 52 (181)
T cd01742 8 SQYTHLIARRVRELGVYSEILPNTT-PLE------EIKLK-NPKGIILSGGPS 52 (181)
T ss_pred CchHHHHHHHHHhcCceEEEecCCC-Chh------hhccc-CCCEEEECCCcc
Confidence 6788999999999998776544322 111 11233 599999999865
No 144
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=49.00 E-value=35 Score=32.75 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=39.1
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCC
Q 011289 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGT 365 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~ 365 (489)
..+++.+|.+...- .+.......+.+.+. |++......+.+..+.=...+.+.+. ++|.|+.+||-
T Consensus 28 ~~~~i~~iptA~~~-----~~~~~~~~~~~~~~l-----G~~~v~~~~~~~~~~a~~~~~~~~l~--~ad~I~~~GG~ 93 (217)
T cd03145 28 AGARIVVIPAASEE-----PAEVGEEYRDVFERL-----GAREVEVLVIDSREAANDPEVVARLR--DADGIFFTGGD 93 (217)
T ss_pred CCCcEEEEeCCCcC-----hhHHHHHHHHHHHHc-----CCceeEEeccCChHHcCCHHHHHHHH--hCCEEEEeCCc
Confidence 46889999875432 233345666777777 88766665555311111112223343 68999999973
No 145
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=48.99 E-value=1.2e+02 Score=27.72 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=46.9
Q ss_pred EEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhh----cCCCcEEEEeCCCCCC
Q 011289 293 AILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSD----IDKMDLILTLGGTGFT 368 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~----~~~~DlVIttGG~G~t 368 (489)
-|+.+||.+..|.-......|...+..+....-.++++....+-.+..+.+.+.+...+. ..+.|+|+..-|+--.
T Consensus 3 ~i~~lGDSit~G~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gi~G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~ 82 (193)
T cd01835 3 RLIVVGDSLVYGWGDPEGGGWVGRLRARWMNLGDDPVLYNLGVRGDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDT 82 (193)
T ss_pred EEEEEcCccccCCCCCCCCChHHHHHHHhhccCCCeeEEeecCCCCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCccc
Confidence 367779999887543223334433332221111277888899999998887666544321 1378999998877644
No 146
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=48.95 E-value=29 Score=34.51 Aligned_cols=68 Identities=25% Similarity=0.259 Sum_probs=36.4
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
||||+|+.. ||. +.- .-+...++..|+++..+. +.| .+... ..++ ++|+|+..||.|
T Consensus 1 kpkV~Vl~~------pGt---------Nce-~e~~~A~~~aG~~~~~v~-~~d---l~~~~--~~l~-~~~~lvipGGFS 57 (259)
T PF13507_consen 1 KPKVAVLRF------PGT---------NCE-RETAAAFENAGFEPEIVH-IND---LLSGE--SDLD-DFDGLVIPGGFS 57 (259)
T ss_dssp --EEEEEE-------TTE---------EEH-HHHHHHHHCTT-EEEEEE-CCH---HHTTS----GC-C-SEEEE-EE-G
T ss_pred CCEEEEEEC------CCC---------CCH-HHHHHHHHHcCCCceEEE-EEe---ccccc--Cchh-hCcEEEECCccC
Confidence 689999863 333 223 234555778899988743 222 11110 1444 599999999999
Q ss_pred CCCCCchHHHH
Q 011289 88 MGDKDFVKPLL 98 (489)
Q Consensus 88 ~G~~D~~~~~l 98 (489)
.||+--.-.++
T Consensus 58 ~gD~l~sg~~~ 68 (259)
T PF13507_consen 58 YGDYLRSGAIA 68 (259)
T ss_dssp GGGTTSTTHHH
T ss_pred ccccchHHHHH
Confidence 99987544444
No 147
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=48.80 E-value=55 Score=31.62 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=51.5
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCC
Q 011289 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF 367 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~ 367 (489)
+..+|+.|.+..-... .|---....+.|.+. |+++.......++.++|++.|. +.|+|...||
T Consensus 31 ~~~~i~FIPtAs~~~~---~~~Yv~k~~~~l~~l-----g~~v~~L~l~~~~~~~Ie~~l~------~~d~IyVgGG--- 93 (224)
T COG3340 31 KRKTIAFIPTASVDSE---DDFYVEKVRNALAKL-----GLEVSELHLSKPPLAAIENKLM------KADIIYVGGG--- 93 (224)
T ss_pred CCceEEEEecCccccc---hHHHHHHHHHHHHHc-----CCeeeeeeccCCCHHHHHHhhh------hccEEEECCc---
Confidence 3678999976443221 111223444567777 9999999999999999999887 4799999997
Q ss_pred CCCCChHHHHHHhhc
Q 011289 368 TPRDVTPEATKELIE 382 (489)
Q Consensus 368 t~~D~T~eav~~~~~ 382 (489)
-|...+..+-+
T Consensus 94 ----NTF~LL~~lke 104 (224)
T COG3340 94 ----NTFNLLQELKE 104 (224)
T ss_pred ----hHHHHHHHHHH
Confidence 35555555433
No 148
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=48.58 E-value=44 Score=30.09 Aligned_cols=50 Identities=8% Similarity=0.102 Sum_probs=35.0
Q ss_pred HHHHHHHhCCCeEEEEEe-ecCCHHHHHHHHHHHH-hcCCCEEEEeCCCcCC
Q 011289 40 MLLAAAMQQHCKLIDLGI-VRDDEEELEKTLDNAF-SAGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~-v~Dd~~~i~~~l~~~~-~~~~DlvittGG~s~G 89 (489)
.|.+.|++.|++|.+++. -+.|...+...+.++. +.++|.=|..-|+|+|
T Consensus 17 ~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~e~~~GIliCGtGiG 68 (141)
T TIGR01118 17 VIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQKDEQNLGIVIDAYGAG 68 (141)
T ss_pred HHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCCHh
Confidence 456788899999999996 1224455666665554 3358888888888876
No 149
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=47.97 E-value=62 Score=31.94 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=38.1
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEc-ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRD-SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~d-sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
.||.|+|.+...+.. +...+ .+..++.+ +.+.|+.++.+....++.+.+.+. ++ .+|-||.|||
T Consensus 6 ~~P~Igi~~~~~~~~---------~~~~~~~~~~y~~~-i~~aGg~pv~lp~~~~~~~~~~~~----l~-~~DGlil~GG 70 (254)
T PRK11366 6 NNPVIGVVMCRNRLK---------GHATQTLQEKYLNA-IIHAGGLPIALPHALAEPSLLEQL----LP-KLDGIYLPGS 70 (254)
T ss_pred CCCEEEEeCCCcccC---------cchHHHHHHHHHHH-HHHCCCEEEEecCCCCCHHHHHHH----HH-hCCEEEeCCC
Confidence 579999976332211 11112 33445554 455788877666443444444433 33 3899999997
Q ss_pred -CcC
Q 011289 86 -VSM 88 (489)
Q Consensus 86 -~s~ 88 (489)
.++
T Consensus 71 ~~dv 74 (254)
T PRK11366 71 PSNV 74 (254)
T ss_pred CCCc
Confidence 455
No 150
>PRK00758 GMP synthase subunit A; Validated
Probab=47.93 E-value=73 Score=29.43 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=29.1
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCC-CEEEEeCCCc
Q 011289 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGI-DILLTSGGVS 87 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~-DlvittGG~s 87 (489)
++|..++..++++.|+++..+..- .+++ + ++ ++ |.||.+||-+
T Consensus 9 ~~~~~~i~~~l~~~g~~~~~~~~~-~~~~-------~-l~-~~~dgivi~Gg~~ 52 (184)
T PRK00758 9 GQYNHLIHRTLRYLGVDAKIIPNT-TPVE-------E-IK-AFEDGLILSGGPD 52 (184)
T ss_pred CchHHHHHHHHHHcCCcEEEEECC-CCHH-------H-Hh-hcCCEEEECCCCC
Confidence 578899999999999976543311 1121 2 22 25 9999999863
No 151
>PRK10468 hydrogenase 2 small subunit; Provisional
Probab=47.84 E-value=57 Score=34.11 Aligned_cols=126 Identities=10% Similarity=0.094 Sum_probs=64.8
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCC-HHHHHHHHHHhhhc-CCCcEEEEeCCCCCCCC--------CChHHHH
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDD-VGKIKEVLRRWSDI-DKMDLILTLGGTGFTPR--------DVTPEAT 377 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd-~~~I~~~l~~~~~~-~~~DlVIttGG~G~t~~--------D~T~eav 377 (489)
++..+.+.++|.+. +++.+...+... -++..+.++++++. .+.|+++..|.+++... .-..|.+
T Consensus 68 ~a~~P~~~~ll~~~------i~l~yH~tl~aa~G~~a~~~l~~~~~~~~~~~ILvVEGaIp~~~~G~y~~~gg~~~~e~l 141 (371)
T PRK10468 68 RATHPTVENLVLET------ISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHI 141 (371)
T ss_pred ccCCCCHHHHHhcC------ceeeeccHHHHHhHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCcceeeECCchHHHHH
Confidence 45556667777654 466666666532 34455566665542 25799999999965422 1234444
Q ss_pred HHhhccccc--cHHHHHHhccc-ccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHH
Q 011289 378 KELIERETP--GLLYVMMQESL-KVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 439 (489)
Q Consensus 378 ~~~~~~~l~--g~~e~~~~~~~-~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l 439 (489)
.++..+.-- -+..--.+=|+ +..|...-+.+..+++.+++||++||.|..=..++..++-++
T Consensus 142 ~~~a~~A~aVVAvGtCAs~GGI~aa~pnptga~gv~~~l~~~PVINIPGCPp~P~~i~~tL~~l~ 206 (371)
T PRK10468 142 RKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHII 206 (371)
T ss_pred HHHhccCCEEEEEecccccCCcccCCCCCCCCccHHHhcCCCCeEEcCCCCCCHHHHHHHHHHHH
Confidence 444333100 00000000011 011111001122344567899999999988777777665444
No 152
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=47.62 E-value=53 Score=27.67 Aligned_cols=47 Identities=19% Similarity=0.008 Sum_probs=33.9
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
+-.-.+|++.|++.|+++..++.-. +.+++.+.+++. +.|+|..|.-
T Consensus 14 ~lGl~~la~~l~~~G~~v~~~d~~~-~~~~l~~~~~~~---~pd~V~iS~~ 60 (121)
T PF02310_consen 14 PLGLLYLAAYLRKAGHEVDILDANV-PPEELVEALRAE---RPDVVGISVS 60 (121)
T ss_dssp SHHHHHHHHHHHHTTBEEEEEESSB--HHHHHHHHHHT---TCSEEEEEES
T ss_pred hHHHHHHHHHHHHCCCeEEEECCCC-CHHHHHHHHhcC---CCcEEEEEcc
Confidence 3445789999999999998775533 346666666654 5899998764
No 153
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=47.56 E-value=50 Score=29.78 Aligned_cols=50 Identities=6% Similarity=0.078 Sum_probs=35.6
Q ss_pred HHHHHHHhCCCeEEEEEee-cCCHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011289 40 MLLAAAMQQHCKLIDLGIV-RDDEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v-~Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
.|.+.|++.|++|.+++.- +.|..++...+.+++. .++|.=|..-|||+|
T Consensus 17 ~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG 68 (142)
T PRK08621 17 VVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAG 68 (142)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChh
Confidence 4566788999999999972 1245556666666653 347888888888876
No 154
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=47.42 E-value=34 Score=35.80 Aligned_cols=50 Identities=18% Similarity=0.110 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCeEEEEEeecCC--HHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDD--EEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd--~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
--+.+.|++.|.++..+.-+.-+ .+.+.+.++.+.+.++|+||-.||=|+
T Consensus 48 ~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 99 (382)
T PRK10624 48 AKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSP 99 (382)
T ss_pred HHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 34778888899888776544333 466777777776667999998888664
No 155
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=47.19 E-value=36 Score=33.99 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=34.7
Q ss_pred cChHHHHHHHHHhCCCeE----EEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 35 DSNRAMLLAAAMQQHCKL----IDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~----~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
|.----+...|++.|+.. ..+--...|++.+.+.+++..+.+.|+|+++|..
T Consensus 14 ~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~ 69 (294)
T PF04392_consen 14 DDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTP 69 (294)
T ss_dssp HHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHH
T ss_pred HHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcH
Confidence 344455667788888875 3345667889999999988776679999999843
No 156
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=47.15 E-value=56 Score=31.20 Aligned_cols=69 Identities=19% Similarity=0.098 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC-CeEE
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYF 106 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G-~~~f 106 (489)
...-+...++++|+++........|.+...+.+++++++++|.||++.-.+..-.+++.++.+ -| .+++
T Consensus 16 ~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~-~gIpvv~ 85 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKA-AGIPVVT 85 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHH-TTSEEEE
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhh-cCceEEE
Confidence 344567788999999888667777788899999999988899999887655444455544333 34 4444
No 157
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=47.14 E-value=1.2e+02 Score=28.94 Aligned_cols=81 Identities=23% Similarity=0.245 Sum_probs=58.5
Q ss_pred EEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCCh
Q 011289 294 ILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVT 373 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T 373 (489)
|+.||-|=..|+..|. ++.+++.|... .+.|.++ ....+|-...+..++|.+.++..+.|+||..| .-+|.-++|
T Consensus 3 vLvTGFePF~~~~~NP-s~e~vk~L~~~--~i~g~~V-~~~~lP~~f~~s~~~l~~~i~~~qPd~vl~iG-~A~GR~~iT 77 (207)
T COG2039 3 VLVTGFEPFGGEPINP-SWEAVKELNGR--IIGGAEV-KGRILPVVFKKSIDALVQAIAEVQPDLVLAIG-QAGGRTKIT 77 (207)
T ss_pred EEEEeccCCCCCCCCh-HHHHHHhcCcc--cccCceE-EEEEcCccHHHHHHHHHHHHHhhCCCeEEEec-ccCCCCcCC
Confidence 6778877666555443 44555666654 3336554 56789999999999999988877899999987 445778899
Q ss_pred HHHHHH
Q 011289 374 PEATKE 379 (489)
Q Consensus 374 ~eav~~ 379 (489)
+|=++-
T Consensus 78 ~ERVAI 83 (207)
T COG2039 78 PERVAI 83 (207)
T ss_pred hhheee
Confidence 986653
No 158
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=47.14 E-value=92 Score=29.83 Aligned_cols=67 Identities=13% Similarity=0.061 Sum_probs=38.4
Q ss_pred CchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCC-hHHHHHHhhccccc
Q 011289 309 RSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDV-TPEATKELIERETP 386 (489)
Q Consensus 309 ~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~-T~eav~~~~~~~l~ 386 (489)
.-...+..+|++. |+++..+..-.++.+. +...++ .+|.||.+||-+--.+|- ..+.+.++.+..+|
T Consensus 11 ~~~~~~~~~l~~~-----G~~~~~~~~~~~~~~~----~~~~~~--~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~P 78 (214)
T PRK07765 11 SFVFNLVQYLGQL-----GVEAEVWRNDDPRLAD----EAAVAA--QFDGVLLSPGPGTPERAGASIDMVRACAAAGTP 78 (214)
T ss_pred cHHHHHHHHHHHc-----CCcEEEEECCCcCHHH----HHHhhc--CCCEEEECCCCCChhhcchHHHHHHHHHhCCCC
Confidence 3335677888888 8887765443333222 222333 799999999976433332 22355555544444
No 159
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=46.30 E-value=51 Score=29.79 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=45.5
Q ss_pred EEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 293 AILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
-|+.+||.+..|.- -...+...|.+..... ++++....+-.+....+...+...+...++|+|+..-|+=
T Consensus 3 ~v~~~GDSit~g~~---~~~~~~~~l~~~~~~~-~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~G~N 72 (191)
T cd01834 3 RIVFIGNSITDRGG---YVGYVETYLAARYPEL-KLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFGIN 72 (191)
T ss_pred EEEEeCCChhhccc---cHHHHHHHHHHhCCCC-CcEEEEcccCccchhhhhhhhhcccccCCCCEEEEEeecc
Confidence 37889999988761 2234444554431111 6788888888888887775555444335789999877654
No 160
>PRK09273 hypothetical protein; Provisional
Probab=46.14 E-value=37 Score=32.64 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHHHHHhCCCeEEEEEeecC-----CHHHHHHHHHHHHh-cCCCEEEEeCCCcCC
Q 011289 41 LLAAAMQQHCKLIDLGIVRD-----DEEELEKTLDNAFS-AGIDILLTSGGVSMG 89 (489)
Q Consensus 41 l~a~l~~~G~~~~~~~~v~D-----d~~~i~~~l~~~~~-~~~DlvittGG~s~G 89 (489)
|...|++.|++|.++|.-.+ |.-.+...+..++. ..+|..|+.-|||.|
T Consensus 22 L~~~L~~~G~eV~D~G~~~~~~~s~dYpd~a~~vA~~V~~g~~d~GIliCGTGiG 76 (211)
T PRK09273 22 LKKVADPKGHEVFNYGMYDEEDHQLTYVQNGIMASILLNSKAVDFVVTGCGTGQG 76 (211)
T ss_pred HHHHHHHCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCcHHH
Confidence 45567899999999997432 44455556666553 358999999999976
No 161
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=45.98 E-value=47 Score=29.93 Aligned_cols=114 Identities=12% Similarity=0.057 Sum_probs=63.1
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEE-cCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccccc
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDV-VPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETP 386 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~-v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~ 386 (489)
|..|..+.+.|.+.+... |++|..++. -+.|..++...+.+.+....+|.=|..-|||.+- +=+.+| .+
T Consensus 8 DhaG~~lK~~l~~~L~~~-G~eV~D~G~~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~--------siaANK-~~ 77 (142)
T PRK08621 8 DKAGFELKEVVKDYLEDN-KYEVVDVTEEGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGS--------FMVATK-IK 77 (142)
T ss_pred CcchHHHHHHHHHHHHHC-CCEEEECCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhh--------hhhhhc-CC
Confidence 455555555444444443 999998876 2236677777777777656788888888888763 111221 12
Q ss_pred cHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHH
Q 011289 387 GLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 439 (489)
Q Consensus 387 g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l 439 (489)
|+.-+ -..-...+. .+-..|+..|++|.+--.....+.+.+--+|
T Consensus 78 GIRAA----~~~d~~~A~----~ar~hNnaNVL~lG~r~ig~~~a~~iv~~fL 122 (142)
T PRK08621 78 GMVAA----EVSDERSAY----MTRGHNNARMITMGSEIVGDGLAKNIIKGFV 122 (142)
T ss_pred CeEEE----EECCHHHHH----HHHHHcCCcEEEECccccCHHHHHHHHHHHH
Confidence 22100 000001111 1223588999999997666555555443333
No 162
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=45.98 E-value=80 Score=29.27 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=42.0
Q ss_pred cCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccccc
Q 011289 307 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETP 386 (489)
Q Consensus 307 ~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~ 386 (489)
.+.|...+.+.|++. |+++..+..- .+.+++. .. .+|.||.+||-+-..++-..+.+..+.+...|
T Consensus 7 g~~~~~~l~~~l~~~-----g~~~~~~~~~-~~~~~~~----~~----~~~glii~Gg~~~~~~~~~~~~i~~~~~~~~P 72 (188)
T TIGR00888 7 GSQYTQLIARRLREL-----GVYSELVPNT-TPLEEIR----EK----NPKGIILSGGPSSVYAENAPRADEKIFELGVP 72 (188)
T ss_pred CchHHHHHHHHHHHc-----CCEEEEEeCC-CCHHHHh----hc----CCCEEEECCCCCCcCcCCchHHHHHHHhCCCC
Confidence 467788899999998 9876433322 2334432 21 36799999987765555556677766654444
No 163
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=45.83 E-value=67 Score=25.55 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
..+-+++..++.+|++++.-.--+--..++++.++.+. +++++.||-=|
T Consensus 20 ~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk-~G~~~~itpDG 68 (74)
T PF04028_consen 20 RDGELIARVLERFGFRTIRGSSSRGGARALREMLRALK-EGYSIAITPDG 68 (74)
T ss_pred cCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHH-CCCeEEEeCCC
Confidence 45678999999999999998877788889999988766 47899988654
No 164
>PRK10468 hydrogenase 2 small subunit; Provisional
Probab=45.82 E-value=35 Score=35.63 Aligned_cols=116 Identities=13% Similarity=0.199 Sum_probs=66.2
Q ss_pred EEcChHHHHHHHHHhCCCeEEEEEeec-CCHHHHHHHHHHHHh--cCCCEEEEeCCCcCCCC--------CchHHHHHhc
Q 011289 33 IRDSNRAMLLAAAMQQHCKLIDLGIVR-DDEEELEKTLDNAFS--AGIDILLTSGGVSMGDK--------DFVKPLLQKK 101 (489)
Q Consensus 33 i~dsn~~~l~a~l~~~G~~~~~~~~v~-Dd~~~i~~~l~~~~~--~~~DlvittGG~s~G~~--------D~~~~~l~~~ 101 (489)
..++..+.+..+|.+. +++.++..+- ..-++..+.|+++++ .+.|+++..|.+...+. .-..+.+.++
T Consensus 66 lL~a~~P~~~~ll~~~-i~l~yH~tl~aa~G~~a~~~l~~~~~~~~~~~ILvVEGaIp~~~~G~y~~~gg~~~~e~l~~~ 144 (371)
T PRK10468 66 LLRATHPTVENLVLET-ISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKA 144 (371)
T ss_pred HhccCCCCHHHHHhcC-ceeeeccHHHHHhHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCcceeeECCchHHHHHHHH
Confidence 3456667777888776 6777766654 223455666666654 24699999999966532 2244555554
Q ss_pred C---C-eE-------EeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHH
Q 011289 102 G---T-IY-------FNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYI 155 (489)
Q Consensus 102 G---~-~~-------f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v 155 (489)
. . ++ |-||.--.+.|+..--+.+ -..+++|+.+||.|..-......++
T Consensus 145 a~~A~aVVAvGtCAs~GGI~aa~pnptga~gv~~------~l~~~PVINIPGCPp~P~~i~~tL~ 203 (371)
T PRK10468 145 AEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQE------VLPGKTVINIPGCPPNPHNFLATVA 203 (371)
T ss_pred hccCCEEEEEecccccCCcccCCCCCCCCccHHH------hcCCCCeEEcCCCCCCHHHHHHHHH
Confidence 2 1 22 3444433334432111110 0014789999999988776655553
No 165
>PRK14556 pyrH uridylate kinase; Provisional
Probab=45.60 E-value=60 Score=32.11 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=41.5
Q ss_pred ceEEEEEEeCCcccCCCccCC-------------------chHHHHHHHHccccccCCcEEEEEEEcCCCH----HHHHH
Q 011289 289 EFSVAILTVSDTVASGAGPDR-------------------SGPRAVSVVNSSSEKLGGAKVVATDVVPDDV----GKIKE 345 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~G~~~D~-------------------n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~----~~I~~ 345 (489)
..+++|++-|-.+.+|...+. |+..+...|.+. |....-...++.+. ....+
T Consensus 54 g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~iNal~l~~~l~~~-----~~~~~v~sa~~~~~~~e~~~~~~ 128 (249)
T PRK14556 54 GVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMINALALRDMLISE-----GVDAEVFSAKGVDGLLKVASAHE 128 (249)
T ss_pred CcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHHHHHHHHHHHHHc-----CCCeEEeeccccCcCCCCCCHHH
Confidence 357888888888877744442 455556666665 66654433332221 12333
Q ss_pred HHHHhhhcCCCcEEEEeCCCCC
Q 011289 346 VLRRWSDIDKMDLILTLGGTGF 367 (489)
Q Consensus 346 ~l~~~~~~~~~DlVIttGG~G~ 367 (489)
++ +.++ +.++||..||+|.
T Consensus 129 ~~-~~l~--~g~vvi~~gg~G~ 147 (249)
T PRK14556 129 FN-QELA--KGRVLIFAGGTGN 147 (249)
T ss_pred HH-HHHh--CCCEEEEECCCCC
Confidence 33 3444 5679999999863
No 166
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=45.23 E-value=38 Score=34.23 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=33.6
Q ss_pred HHHHHHhC-CCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 41 LLAAAMQQ-HCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 41 l~a~l~~~-G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
+..+-+++ |+++.....++++.+...+.++++.++++|+||++|.
T Consensus 25 ~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~ 70 (306)
T PF02608_consen 25 LKRAEKELDGIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGF 70 (306)
T ss_dssp HHHHHHHCTTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESG
T ss_pred HHHHHHHcCCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccH
Confidence 44456678 8998888888755678888888888778999999984
No 167
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=45.21 E-value=76 Score=29.29 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=44.1
Q ss_pred EEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHH--HHHHHHhc--CCCEEEEeCCC
Q 011289 13 VLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEK--TLDNAFSA--GIDILLTSGGV 86 (489)
Q Consensus 13 iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~--~l~~~~~~--~~DlvittGG~ 86 (489)
|+..||-+..-... +...++-...|...+.. ++++...++-.+.-..+.. .+.+.+.. ..|+||...|+
T Consensus 3 i~~~GDS~t~G~~~----~~~~~~w~~~l~~~~~~-~~~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~ 75 (198)
T cd01821 3 IFLAGDSTVADYDP----GAPQAGWGQALPQYLDT-GITVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGH 75 (198)
T ss_pred EEEEecCCcccCCC----CCCCCChHHHHHHHhCC-CCEEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCC
Confidence 44559988743322 12334555557776654 7899999999998765542 33333321 48999999986
No 168
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=45.13 E-value=1.2e+02 Score=30.79 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHhCCCeEEEEE-----eecCC-----------HHHHHHHHHHHHhcCCCEEEEeC--CC---------cC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLG-----IVRDD-----------EEELEKTLDNAFSAGIDILLTSG--GV---------SM 88 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~-----~v~Dd-----------~~~i~~~l~~~~~~~~DlvittG--G~---------s~ 88 (489)
-++.+++++|++.|+....+. ++.|+ ...+.+.+.+.+++ .++.|++| |. |-
T Consensus 128 lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~-~~vpVv~Gfig~~~~g~~ttlgR 206 (298)
T cd04244 128 LSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPMLED-GKIPVVTGFIGATEDGAITTLGR 206 (298)
T ss_pred HHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHHHHHHHHHHHHhhc-CCEEEEeCccccCCCCCEEEecC
Confidence 477889999999999887764 33222 34455566655553 68999988 43 23
Q ss_pred CCCCchHHHHHh-cC--CeEEe
Q 011289 89 GDKDFVKPLLQK-KG--TIYFN 107 (489)
Q Consensus 89 G~~D~~~~~l~~-~G--~~~f~ 107 (489)
|.-|++..++.. ++ ++.++
T Consensus 207 ggsD~~A~~~A~~l~a~~l~i~ 228 (298)
T cd04244 207 GGSDYSATIIGAALDADEIWIW 228 (298)
T ss_pred CChHHHHHHHHHHcCCCEEEEE
Confidence 456999998876 45 34443
No 169
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=45.10 E-value=75 Score=29.48 Aligned_cols=46 Identities=13% Similarity=0.011 Sum_probs=31.5
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
++|..+|..+|++.|+++..+.. ..+++++. + . +.|.||.+||-+.
T Consensus 8 ~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~~~----~-~--~~~glii~Gg~~~ 53 (188)
T TIGR00888 8 SQYTQLIARRLRELGVYSELVPN-TTPLEEIR----E-K--NPKGIILSGGPSS 53 (188)
T ss_pred chHHHHHHHHHHHcCCEEEEEeC-CCCHHHHh----h-c--CCCEEEECCCCCC
Confidence 68999999999999998754432 22344442 1 1 2579999998664
No 170
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=44.76 E-value=51 Score=30.24 Aligned_cols=50 Identities=10% Similarity=-0.070 Sum_probs=31.2
Q ss_pred cCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCC
Q 011289 307 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPR 370 (489)
Q Consensus 307 ~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~ 370 (489)
.|.|...+.+.|++. |+++..+..-.+ .+ ...++ ++|.||.+||-+...+
T Consensus 7 g~~~~~~~~~~l~~~-----G~~~~~~~~~~~-~~------~~~~~--~~dgvIl~Gg~~~~~~ 56 (181)
T cd01742 7 GSQYTHLIARRVREL-----GVYSEILPNTTP-LE------EIKLK--NPKGIILSGGPSSVYE 56 (181)
T ss_pred CCchHHHHHHHHHhc-----CceEEEecCCCC-hh------hhccc--CCCEEEECCCcccccc
Confidence 356778889999998 976554332211 11 11233 7999999998664333
No 171
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=44.51 E-value=52 Score=32.76 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=28.1
Q ss_pred HHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCC
Q 011289 42 LAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDK 91 (489)
Q Consensus 42 ~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~ 91 (489)
...+++.|+++..+.+ .|..+ ....++ ++|.||..||.|.+++
T Consensus 21 ~~Al~~aG~~v~~v~~-~~~~~-----~~~~l~-~~DgLvipGGfs~gD~ 63 (261)
T PRK01175 21 VKAFRRLGVEPEYVHI-NDLAA-----ERKSVS-DYDCLVIPGGFSAGDY 63 (261)
T ss_pred HHHHHHCCCcEEEEee-ccccc-----cccchh-hCCEEEECCCCCcccc
Confidence 5677789999776544 22111 112244 5999999999887774
No 172
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=44.32 E-value=23 Score=29.80 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=37.0
Q ss_pred CCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHH----------HHHHHHHhcCCCEEEEeC
Q 011289 30 RGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELE----------KTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 30 ~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~----------~~l~~~~~~~~DlvittG 84 (489)
...+|+|-+.-|...|++.|+++..+...-++..... +.+.++++ ++|+||..-
T Consensus 11 ~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~vvl~t 74 (106)
T PF03720_consen 11 TDDIRESPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALK-GADAVVLAT 74 (106)
T ss_dssp SS--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHT-TESEEEESS
T ss_pred CcccccCHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhc-CCCEEEEEe
Confidence 4578999999999999999999999887665544433 23566665 699999765
No 173
>KOG2644 consensus 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=44.16 E-value=7.4 Score=38.87 Aligned_cols=72 Identities=18% Similarity=0.297 Sum_probs=61.7
Q ss_pred CCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHh
Q 011289 28 LDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQK 100 (489)
Q Consensus 28 ~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~ 100 (489)
...|.+.|+|+......+...|.+.....++.||..++.+...+...+ .+.|+.+||.+....|.+.+.+..
T Consensus 16 ~~~~~~~~t~~sf~~~~~~~~~~~~~s~~~~~~d~~q~~~~~~~l~~~-~e~i~~a~~i~~~~~~i~~E~~a~ 87 (282)
T KOG2644|consen 16 LANGSTEDTNSSFKGLHLSTSGVQLKSINIVDDDAAQILDEVLRLTRQ-LEFILKAGGIGPTHDDITQEEMAL 87 (282)
T ss_pred hcccceeeeeeeccccccccccccceeeecccchHHHHHHHHHHHHHH-HHHHHHhhccCCccchhhHHHHHH
Confidence 346889999999999999999999999999999999988887777764 799999999999999988665543
No 174
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=44.09 E-value=76 Score=29.63 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=36.9
Q ss_pred cCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCC-ChHHHHHH
Q 011289 307 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRD-VTPEATKE 379 (489)
Q Consensus 307 ~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D-~T~eav~~ 379 (489)
.|+....+.+.|++. |+++..+ +.|...+ +.+.. .++|.||.+||=|--.|+ ...+.++.
T Consensus 8 ~Dsft~nl~~~l~~~-----g~~v~v~---~~~~~~~-~~~~~----~~~d~iils~GPg~p~~~~~~~~~~~~ 68 (187)
T PRK08007 8 YDSFTWNLYQYFCEL-----GADVLVK---RNDALTL-ADIDA----LKPQKIVISPGPCTPDEAGISLDVIRH 68 (187)
T ss_pred CCccHHHHHHHHHHC-----CCcEEEE---eCCCCCH-HHHHh----cCCCEEEEcCCCCChHHCCccHHHHHH
Confidence 478888999999998 8876543 4442111 11221 268999999998654443 33334433
No 175
>TIGR00391 hydA hydrogenase (NiFe) small subunit (hydA). Called (hupA/hydA/hupS/hoxK/vhtG) Involved in hydrogenase reactions performing different specific functions in different species eg (EC 1.12.2.1) in Desulfovibrio gigas,(EC 1.12.99.3) in Wolinella succinogenes and (EC 1.18.99.1) in E.coli and a number of other species and (EC 1.12.99.-) in the archea.
Probab=43.44 E-value=46 Score=34.74 Aligned_cols=114 Identities=16% Similarity=0.228 Sum_probs=66.4
Q ss_pred EEcChHHHHHHHHHhCCCeEEEEEeecCCH-HHHHHHHHHHHh--cCCCEEEEeCCCcCCCC--------CchHHHHHhc
Q 011289 33 IRDSNRAMLLAAAMQQHCKLIDLGIVRDDE-EELEKTLDNAFS--AGIDILLTSGGVSMGDK--------DFVKPLLQKK 101 (489)
Q Consensus 33 i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~-~~i~~~l~~~~~--~~~DlvittGG~s~G~~--------D~~~~~l~~~ 101 (489)
..|+..+.+..++.+. +++.+...+-+.. ++..+.++++++ .+.|+++.-|++...+. .-..+.++++
T Consensus 68 lL~s~~P~~~~~ll~~-isl~yhptlmaa~G~~ae~~l~~~~~~~~g~~ILvVEGaIp~~~~G~y~~~~g~~~~e~l~~~ 146 (365)
T TIGR00391 68 LLRSAHPTVENLILET-ISLEYHETLMAAFGHQAEENKHDAIEKYKGQYILVVEGSIPLGDNGIYCMVAGEPIVEHIRKA 146 (365)
T ss_pred HhccCCCCHHHHHhcC-ceEEechHhHHhhHHHHHHHHHHHHhccCCCeEEEEeCCCCCCCCceeeeeCCcHHHHHHHHH
Confidence 4567778888888776 6777777766543 344555665554 24799999999977654 2245555554
Q ss_pred C---C-eE-------Eeeee-ecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHH
Q 011289 102 G---T-IY-------FNKVC-MKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLY 154 (489)
Q Consensus 102 G---~-~~-------f~~v~-~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~ 154 (489)
. . ++ |-||. ++| .|+..--+.+ -..+++|+.+||.|..-......+
T Consensus 147 a~~A~aVIAvGtCAs~GGI~aa~p-nptga~~v~~------vi~~~pvinIPGCPp~Pe~i~~tl 204 (365)
T TIGR00391 147 AEGAAAIIAIGTCSSWGGVQAAGP-NPTGAVPLQK------VIPDKPVINVPGCPPNPHNFLATV 204 (365)
T ss_pred hhcCCEEEEEeccccccCccCCCC-CCCCCcchhH------hcCCCCeEEeCCCCCCHHHHHHHH
Confidence 3 2 22 23443 222 2221100110 011378999999999887766555
No 176
>CHL00101 trpG anthranilate synthase component 2
Probab=43.07 E-value=76 Score=29.65 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=39.0
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccccc
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETP 386 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~ 386 (489)
|+-+..+++.|++. |+++. +++.+...+. .+.. .++|.||.+||-|--.++-....+.+.....+|
T Consensus 9 dsft~~l~~~l~~~-----g~~~~---v~~~~~~~~~-~~~~----~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~P 74 (190)
T CHL00101 9 DSFTYNLVQSLGEL-----NSDVL---VCRNDEIDLS-KIKN----LNIRHIIISPGPGHPRDSGISLDVISSYAPYIP 74 (190)
T ss_pred CchHHHHHHHHHhc-----CCCEE---EEECCCCCHH-HHhh----CCCCEEEECCCCCChHHCcchHHHHHHhcCCCc
Confidence 55667899999998 86654 5554422221 1211 268999999999754444444444444444444
No 177
>PRK03094 hypothetical protein; Provisional
Probab=42.58 E-value=41 Score=27.29 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
.+-.-|+..|++.|++|+.+.--.| ++ ++|.+|+||
T Consensus 8 ~~Ls~i~~~L~~~GYeVv~l~~~~~------------~~-~~Da~VitG 43 (80)
T PRK03094 8 QSLTDVQQALKQKGYEVVQLRSEQD------------AQ-GCDCCVVTG 43 (80)
T ss_pred cCcHHHHHHHHHCCCEEEecCcccc------------cC-CcCEEEEeC
Confidence 3445589999999999988742122 23 699999999
No 178
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=42.41 E-value=59 Score=29.31 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=64.3
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEE-cCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhccccc
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDV-VPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERETP 386 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~-v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~ 386 (489)
|.+|..+.+.|.+++... |++|..++. -+.|..++...+.+.+...++|.=|..-|+|.+- +=+.+| .+
T Consensus 8 Dh~G~~lK~~i~~~L~~~-G~eV~D~G~~~~~dYpd~a~~va~~V~~~e~~~GIliCGtGiG~--------siaANK-~~ 77 (141)
T TIGR01118 8 DLAGKRLKDVIKNFLVDN-GFEVIDVTEGDGQDFVDVTLAVASEVQKDEQNLGIVIDAYGAGS--------FMVATK-IK 77 (141)
T ss_pred CcchHHHHHHHHHHHHHC-CCEEEEcCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCCHhH--------hhhhhc-CC
Confidence 455555555444444333 999998886 2346677777777777656888888888888653 111221 12
Q ss_pred cHHHHHHhcccccC-CCccccccceeEECCEEEEEcCCCHHHHHHHHHHHHHHH
Q 011289 387 GLLYVMMQESLKVT-PFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPAL 439 (489)
Q Consensus 387 g~~e~~~~~~~~~~-p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ilp~l 439 (489)
|+.- .+-.. ..+- .+-..|+..|++|++--.....+.+.+--+|
T Consensus 78 GIRA-----A~~~d~~~A~----~ar~hNnaNVL~lG~r~~g~~~a~~iv~~fL 122 (141)
T TIGR01118 78 GMIA-----AEVSDERSAY----MTRGHNNARMITVGAEIVGDELAKNIVKAFV 122 (141)
T ss_pred CeEE-----EEECCHHHHH----HHHHHcCCcEEEECccccCHHHHHHHHHHHH
Confidence 2110 00000 1111 1233588999999998777666666544444
No 179
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=42.38 E-value=86 Score=31.61 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=43.1
Q ss_pred eCCeEEEEecCC-----cCcCCCCCCCCCCcEEc--ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHh-cCCC
Q 011289 7 RTPTIAVLSTGD-----ELVEPTTQCLDRGQIRD--SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS-AGID 78 (489)
Q Consensus 7 r~prV~iistGd-----El~~~g~~~~~~g~i~d--sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~-~~~D 78 (489)
+++||+|+.+|. .|+..-+..--..+|.= ||.+-+.++.+++|..+..+..-+++.++-.+.+.+++. .++|
T Consensus 88 ~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~D 167 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAE 167 (286)
T ss_pred cCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcC
Confidence 678999999994 11100000000233322 566677888888898776654433443333333333222 2589
Q ss_pred EEEEeCC
Q 011289 79 ILLTSGG 85 (489)
Q Consensus 79 lvittGG 85 (489)
+|++.|=
T Consensus 168 livlagy 174 (286)
T PRK13011 168 LVVLARY 174 (286)
T ss_pred EEEEeCh
Confidence 9999883
No 180
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=42.28 E-value=83 Score=32.23 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=46.9
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
..||+|+..-+. .|+ .....+...+++.|++++.....+.+..++...+.++...++|+|++.+-.
T Consensus 140 ~~kvaiv~~~~~----------~g~---~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~ 205 (351)
T cd06334 140 GKKIALVYHDSP----------FGK---EPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWG 205 (351)
T ss_pred CCeEEEEeCCCc----------cch---hhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEeccc
Confidence 467888876432 221 344567788999999998887777665667777777766679999976643
No 181
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=41.80 E-value=75 Score=31.65 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=42.2
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
.||+||...++- | .+....+...+++.|.+++.....+.....+...+.++.+.++|+|+..+.
T Consensus 138 ~~vail~~~~~~----------g---~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~ 201 (312)
T cd06346 138 KSVATTYINNDY----------G---VGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGY 201 (312)
T ss_pred CeEEEEEccCch----------h---hHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecc
Confidence 477777655431 1 123456777888999998876666554555666666665557899988754
No 182
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=41.63 E-value=40 Score=34.93 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCeEEEEEeecC--CHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRD--DEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~D--d~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
.-+...|++.|.++..+.-+.. +.+.+.++++.+.+.++|.||..||-|+
T Consensus 39 ~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 90 (366)
T PF00465_consen 39 DRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSV 90 (366)
T ss_dssp HHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHH
T ss_pred HHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc
Confidence 4556678889999988875543 3567888888887778999999999774
No 183
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=41.46 E-value=91 Score=29.16 Aligned_cols=46 Identities=17% Similarity=0.039 Sum_probs=31.6
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
+||-++.+..+|++.|+++..+..-..+.+. +. .+ +.|.||.+||-
T Consensus 8 ~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~----~~-~~--~~~~iilsgGp 53 (193)
T PRK08857 8 YDSFTYNLYQYFCELGAQVKVVRNDEIDIDG----IE-AL--NPTHLVISPGP 53 (193)
T ss_pred CCCcHHHHHHHHHHCCCcEEEEECCCCCHHH----Hh-hC--CCCEEEEeCCC
Confidence 5899999999999999887654332122222 22 22 37899999976
No 184
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=41.41 E-value=1.5e+02 Score=28.10 Aligned_cols=65 Identities=12% Similarity=0.061 Sum_probs=42.5
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC-CeEEee
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYFNK 108 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G-~~~f~~ 108 (489)
-+...+++.|+++... ...+|++...+.+++++.+++|.||+++... .+-..+.+.+.| .+++-+
T Consensus 20 gi~~~~~~~g~~~~~~-~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~---~~~~~~~~~~~~ipvv~~~ 85 (259)
T cd01542 20 GILAALYENGYQMLLM-NTNFSIEKEIEALELLARQKVDGIILLATTI---TDEHREAIKKLNVPVVVVG 85 (259)
T ss_pred HHHHHHHHCCCEEEEE-eCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC---CHHHHHHHhcCCCCEEEEe
Confidence 3445678889998765 3456788888888888776799999986421 222334445556 555543
No 185
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=41.38 E-value=37 Score=36.35 Aligned_cols=87 Identities=10% Similarity=0.073 Sum_probs=55.0
Q ss_pred eEEEEEEeCCcccC---CCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 290 FSVAILTVSDTVAS---GAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~---G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
++++++++++.++. ..........+.+.|++. |++++....+--+.++++++.+.+.. .++|.||+.=.+.
T Consensus 1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~vv~~~~~~~~~~~~~~~~~~~~~-~~~d~ii~~~~tf 74 (452)
T cd00578 1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNEL-----PVEVVDKPEVTGTPDEARKAAEEFNE-ANCDGLIVWMHTF 74 (452)
T ss_pred CEEEEEEecccccChhHHHHHHHHHHHHHHHHhcC-----CceEEecCcccCCHHHHHHHHHHHhh-cCCcEEEEccccc
Confidence 57899999888521 112233345556666666 88998888664488999998888765 4899999754444
Q ss_pred CCCCCChHHHHHHhhccc
Q 011289 367 FTPRDVTPEATKELIERE 384 (489)
Q Consensus 367 ~t~~D~T~eav~~~~~~~ 384 (489)
.+. ....+++.. .+++
T Consensus 75 ~~~-~~~~~~~~~-~~~P 90 (452)
T cd00578 75 GPA-KMWIAGLSE-LRKP 90 (452)
T ss_pred ccH-HHHHHHHHh-cCCC
Confidence 333 334444333 3444
No 186
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=40.97 E-value=46 Score=35.08 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCeEEEEEeecCC--HHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDD--EEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd--~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
-.+...|++.|+++..+.-+.-+ .+.+.+.++.+.+.++|+||-.||=|+
T Consensus 39 ~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 90 (398)
T cd08178 39 DKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSP 90 (398)
T ss_pred HHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 44677888889887766534323 356777777766667999998888665
No 187
>PRK05670 anthranilate synthase component II; Provisional
Probab=40.95 E-value=74 Score=29.60 Aligned_cols=59 Identities=22% Similarity=0.166 Sum_probs=36.6
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC-CCCCCChHHHHHH
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG-FTPRDVTPEATKE 379 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G-~t~~D~T~eav~~ 379 (489)
|+-...+.++|++. |+++..+..-..+.+.+ .. .++|.||.+||-| +...+.+.+.+.+
T Consensus 9 d~f~~~i~~~l~~~-----g~~~~v~~~~~~~~~~~----~~----~~~dglIlsgGpg~~~d~~~~~~~l~~ 68 (189)
T PRK05670 9 DSFTYNLVQYLGEL-----GAEVVVYRNDEITLEEI----EA----LNPDAIVLSPGPGTPAEAGISLELIRE 68 (189)
T ss_pred CchHHHHHHHHHHC-----CCcEEEEECCCCCHHHH----Hh----CCCCEEEEcCCCCChHHcchHHHHHHH
Confidence 55667889999998 98876555433233332 22 1589999999874 3223345555554
No 188
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=40.38 E-value=89 Score=24.85 Aligned_cols=50 Identities=18% Similarity=0.325 Sum_probs=42.5
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 364 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG 364 (489)
...+.+++..++.. |+++++-..-.-....+++.++.+-+ +.++.||--|
T Consensus 19 s~DGe~ia~~~~~~-----G~~~iRGSs~rgg~~Alr~~~~~lk~--G~~~~itpDG 68 (74)
T PF04028_consen 19 SRDGELIARVLERF-----GFRTIRGSSSRGGARALREMLRALKE--GYSIAITPDG 68 (74)
T ss_pred CcCHHHHHHHHHHc-----CCCeEEeCCCCcHHHHHHHHHHHHHC--CCeEEEeCCC
Confidence 45678999999999 99999999888888999999987754 8999998643
No 189
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=40.29 E-value=61 Score=28.52 Aligned_cols=69 Identities=9% Similarity=0.181 Sum_probs=39.8
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHH---HHHHH--------HHHHhc
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEE---LEKTL--------DNAFSA 75 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~---i~~~l--------~~~~~~ 75 (489)
.+.||+||-.|. - +..|..+|.+.|+++..+ ..-+.+. ..+.+ .+.++
T Consensus 9 ~~l~I~iIGaGr-----------V-------G~~La~aL~~ag~~v~~v--~srs~~sa~~a~~~~~~~~~~~~~~~~~- 67 (127)
T PF10727_consen 9 ARLKIGIIGAGR-----------V-------GTALARALARAGHEVVGV--YSRSPASAERAAAFIGAGAILDLEEILR- 67 (127)
T ss_dssp ---EEEEECTSC-----------C-------CCHHHHHHHHTTSEEEEE--SSCHH-HHHHHHC--TT-----TTGGGC-
T ss_pred CccEEEEECCCH-----------H-------HHHHHHHHHHCCCeEEEE--EeCCcccccccccccccccccccccccc-
Confidence 567899998773 1 256888889999887653 3222222 22211 23344
Q ss_pred CCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 76 GIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 76 ~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
.+|+++++ -++|.+.++.+++
T Consensus 68 ~aDlv~ia-----vpDdaI~~va~~L 88 (127)
T PF10727_consen 68 DADLVFIA-----VPDDAIAEVAEQL 88 (127)
T ss_dssp C-SEEEE------S-CCHHHHHHHHH
T ss_pred cCCEEEEE-----echHHHHHHHHHH
Confidence 59999987 4688888888876
No 190
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=40.03 E-value=1.1e+02 Score=32.98 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=51.0
Q ss_pred CCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHh
Q 011289 30 RGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQK 100 (489)
Q Consensus 30 ~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~ 100 (489)
.|-++|-....-+......|+.+...-.-.++..++++... + ..|+|+.+||+=-|+++++-.-.+-
T Consensus 78 ~Glv~~~TaeAAk~AAlgAGA~V~~~~a~~l~~~~l~~I~~--~--~PDIILLaGGtDGG~~e~~l~NA~~ 144 (463)
T TIGR01319 78 IGLVPEITAEAAKRAAHGAGAKIANVYAYDLNNKDIEAIEE--S--NLDIILFAGGTDGGEEECGIHNAKM 144 (463)
T ss_pred EeccchhhHHHHHHHHhcCCcEEEEEEeecCCHHHHHHHhh--c--CCCEEEEeCCcCCCchHHHHHHHHH
Confidence 36667777777777777889999887777787777766554 2 4899999999999999996554333
No 191
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=40.01 E-value=1.3e+02 Score=30.63 Aligned_cols=65 Identities=22% Similarity=0.208 Sum_probs=49.4
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC-CeEEee
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYFNK 108 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G-~~~f~~ 108 (489)
-|...+++.|+++... ...+|++..++.++...++.+|-||..| ....|...+.+.+.+ .+++-+
T Consensus 79 gi~~~~~~~gy~~~l~-~~~~~~~~e~~~~~~l~~~~vdGiIi~~---~~~~~~~~~~l~~~~~P~V~i~ 144 (333)
T COG1609 79 GIEEAAREAGYSLLLA-NTDDDPEKEREYLETLLQKRVDGLILLG---ERPNDSLLELLAAAGIPVVVID 144 (333)
T ss_pred HHHHHHHHcCCEEEEE-CCCCCHHHHHHHHHHHHHcCCCEEEEec---CCCCHHHHHHHHhcCCCEEEEe
Confidence 3455688899987654 5555889999999988887799999999 566777788888877 555443
No 192
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=40.00 E-value=74 Score=28.89 Aligned_cols=73 Identities=11% Similarity=0.018 Sum_probs=47.3
Q ss_pred EEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcC---CCcEEEEeCCCCCCC
Q 011289 294 ILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDID---KMDLILTLGGTGFTP 369 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~---~~DlVIttGG~G~t~ 369 (489)
|+.+||.+..|...... ......|.+.... ++++...++-.+....+.+.+.+.+... .+|+||..-|+=-..
T Consensus 2 i~~~GDSit~g~~~~~~-~~~~~~l~~~~~~--~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~ 77 (199)
T cd01838 2 IVLFGDSITQFSFDQGE-FGFGAALADVYSR--KLDVINRGFSGYNTRWALKVLPKIFLEEKLAQPDLVTIFFGANDAA 77 (199)
T ss_pred EEEecCcccccccCCCC-CcHHHHHHHHhcc--hhheeccCCCcccHHHHHHHHHHhcCccccCCceEEEEEecCcccc
Confidence 67889999887543221 1122333332110 3678888888888888888888776534 699999988775443
No 193
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=39.98 E-value=54 Score=33.13 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=46.0
Q ss_pred chHHHHHHHHccccccCCcEEEEEE-----EcCCC-H------HHHHHHHHHhhhcCCCcEEEEeCCCCCC---------
Q 011289 310 SGPRAVSVVNSSSEKLGGAKVVATD-----VVPDD-V------GKIKEVLRRWSDIDKMDLILTLGGTGFT--------- 368 (489)
Q Consensus 310 n~~~l~~~l~~~~~~~~G~~v~~~~-----~v~Dd-~------~~I~~~l~~~~~~~~~DlVIttGG~G~t--------- 368 (489)
|+..++..|++. |++...+. ++-|+ . ..-.+.+.+++. ..+++|++|.+|.+
T Consensus 123 Sa~ll~~~L~~~-----Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~--~~~v~Vv~Gf~g~~~~G~~ttLg 195 (288)
T cd04245 123 NAQLMAAYLNYQ-----GIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRD--SDEKLVIPGFYGYSKNGDIKTFS 195 (288)
T ss_pred HHHHHHHHHHHC-----CCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHh--CCCEEEEeCccccCCCCCEEEcC
Confidence 457788888888 77766664 33333 2 113445555555 57899999999765
Q ss_pred --CCCChHHHHHHhhcc
Q 011289 369 --PRDVTPEATKELIER 383 (489)
Q Consensus 369 --~~D~T~eav~~~~~~ 383 (489)
.-|+|.-.++..++-
T Consensus 196 RggSD~tAal~A~~l~A 212 (288)
T cd04245 196 RGGSDITGAILARGFQA 212 (288)
T ss_pred CCchHHHHHHHHHHcCC
Confidence 569999999988764
No 194
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=39.94 E-value=67 Score=33.32 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCeEEEEEeecCC--HHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDD--EEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd--~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
-+...|++.|.++..+.-+.-+ .+.+.+.++.+.+.++|.||-.||=|+
T Consensus 39 ~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~ 89 (367)
T cd08182 39 GLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSV 89 (367)
T ss_pred HHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHH
Confidence 3566788888877766544333 466777777766657999998888665
No 195
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=39.92 E-value=1.1e+02 Score=27.41 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=45.9
Q ss_pred EEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHh--CCCeEEEEEeecCCHHHHHHHHHHHHhc-CCCEEEEeCCC
Q 011289 12 AVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQ--QHCKLIDLGIVRDDEEELEKTLDNAFSA-GIDILLTSGGV 86 (489)
Q Consensus 12 ~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~--~G~~~~~~~~v~Dd~~~i~~~l~~~~~~-~~DlvittGG~ 86 (489)
-|+..||-+..-... ...++=...++..|++ .++++...++-.+....+.+.+.+.+.. +.|+|+...|+
T Consensus 2 ~i~~~GDSit~G~~~-----~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ 74 (177)
T cd01822 2 TILALGDSLTAGYGL-----PPEEGWPALLQKRLDARGIDVTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGG 74 (177)
T ss_pred eEEEEccccccCcCC-----CCCCchHHHHHHHHHHhCCCeEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 467779988732111 0112333456666653 4678888999888887777777665542 68999998875
No 196
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=39.80 E-value=28 Score=28.25 Aligned_cols=36 Identities=14% Similarity=0.297 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
+-.-+...|++.|++|+.+.--. + ++ ++|.+|+||-
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~~-----------~-~~-~~daiVvtG~ 44 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENEQ-----------D-LQ-NVDAIVVTGQ 44 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCcc-----------c-cC-CcCEEEEECC
Confidence 33568899999999999876211 1 23 6999999993
No 197
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=39.65 E-value=1.7e+02 Score=26.33 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=51.1
Q ss_pred EEEeCCcccCCCccC---Cc----hHHHHHHHHccccccCCcEEEEEEEcCCCHHH-HHHHHHHhhhcCCCcEEEEeCCC
Q 011289 294 ILTVSDTVASGAGPD---RS----GPRAVSVVNSSSEKLGGAKVVATDVVPDDVGK-IKEVLRRWSDIDKMDLILTLGGT 365 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D---~n----~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~-I~~~l~~~~~~~~~DlVIttGG~ 365 (489)
|+.+||.+..|.-.+ .. ...+++.|.+. -.++.+....+-.+.... +.+.++..+. .+.|+||+.-|+
T Consensus 2 i~~~GDSit~G~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~N~g~~G~~~~~~~~~~~~~~~~-~~~d~vii~~G~ 77 (185)
T cd01832 2 YVALGDSITEGVGDPVPDGGYRGWADRLAAALAAA---DPGIEYANLAVRGRRTAQILAEQLPAALA-LRPDLVTLLAGG 77 (185)
T ss_pred eeEecchhhcccCCCCCCCccccHHHHHHHHhccc---CCCceEeeccCCcchHHHHHHHHHHHHHh-cCCCEEEEeccc
Confidence 678899998775442 11 23344444331 126788888888888775 3455666554 589999998876
Q ss_pred CCCCC-CChHHHHHHh
Q 011289 366 GFTPR-DVTPEATKEL 380 (489)
Q Consensus 366 G~t~~-D~T~eav~~~ 380 (489)
=-... ..+++.+.+-
T Consensus 78 ND~~~~~~~~~~~~~~ 93 (185)
T cd01832 78 NDILRPGTDPDTYRAD 93 (185)
T ss_pred cccccCCCCHHHHHHH
Confidence 54332 4444444443
No 198
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=39.41 E-value=63 Score=33.72 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=36.8
Q ss_pred HHHHHHHhCCCeEEEEEeecCC--HHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDD--EEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd--~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
.+...|++.|.++..+.-+..+ .+.+.+.++.+.+.++|.||-.||=|+
T Consensus 42 ~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 92 (375)
T cd08194 42 KLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSP 92 (375)
T ss_pred HHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 4778888889988766555444 556778777776667999999988765
No 199
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=39.38 E-value=72 Score=29.41 Aligned_cols=59 Identities=20% Similarity=0.369 Sum_probs=35.0
Q ss_pred hHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHH--------HHHhhhcCCCcEEEE-eCCCCCCCCCChHHHHHHhh
Q 011289 311 GPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEV--------LRRWSDIDKMDLILT-LGGTGFTPRDVTPEATKELI 381 (489)
Q Consensus 311 ~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~--------l~~~~~~~~~DlVIt-tGG~G~t~~D~T~eav~~~~ 381 (489)
|.-+|+.|+.. |++|.-+.+ |-...++.. +.+++. .+|++|| ||..+ =++.|-++.+-
T Consensus 35 G~g~A~~lr~~-----Ga~V~V~e~--DPi~alqA~~dGf~v~~~~~a~~--~adi~vtaTG~~~----vi~~e~~~~mk 101 (162)
T PF00670_consen 35 GKGIARALRGL-----GARVTVTEI--DPIRALQAAMDGFEVMTLEEALR--DADIFVTATGNKD----VITGEHFRQMK 101 (162)
T ss_dssp HHHHHHHHHHT-----T-EEEEE-S--SHHHHHHHHHTT-EEE-HHHHTT--T-SEEEE-SSSSS----SB-HHHHHHS-
T ss_pred cHHHHHHHhhC-----CCEEEEEEC--ChHHHHHhhhcCcEecCHHHHHh--hCCEEEECCCCcc----ccCHHHHHHhc
Confidence 67788888888 988765555 434455544 556665 8999998 55322 24666666654
Q ss_pred c
Q 011289 382 E 382 (489)
Q Consensus 382 ~ 382 (489)
+
T Consensus 102 d 102 (162)
T PF00670_consen 102 D 102 (162)
T ss_dssp T
T ss_pred C
Confidence 4
No 200
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=39.27 E-value=58 Score=30.43 Aligned_cols=51 Identities=27% Similarity=0.279 Sum_probs=35.0
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGD 90 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~ 90 (489)
+|+-...+..+|++.|+.+..+....+ .+. +.+.++ ++|.||.+||-+..+
T Consensus 17 ~~~~~~~~~~~l~~~G~~~~iv~~~~~-~~~----~~~~l~-~~dglvl~GG~~~~~ 67 (189)
T cd01745 17 RDYLNQYYVDAVRKAGGLPVLLPPVDD-EED----LEQYLE-LLDGLLLTGGGDVDP 67 (189)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCCCCC-hHH----HHHHHh-hCCEEEECCCCCCCh
Confidence 788788888999999998765543322 222 333344 489999999977643
No 201
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=39.26 E-value=1.5e+02 Score=26.99 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=41.8
Q ss_pred HHHHHHhCCCeEEEEEeec--CCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcCCeEEeeeee
Q 011289 41 LLAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCM 111 (489)
Q Consensus 41 l~a~l~~~G~~~~~~~~v~--Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G~~~f~~v~~ 111 (489)
....|+++|.... ..++. -+++.+.+.++++-.+++|++|+..|.+. +++-++..+-..-.=++..
T Consensus 19 a~~~L~~~gi~~~-~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a----~Lpgvva~~t~~PVIgvP~ 86 (150)
T PF00731_consen 19 AAKTLEEFGIPYE-VRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSA----ALPGVVASLTTLPVIGVPV 86 (150)
T ss_dssp HHHHHHHTT-EEE-EEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS------HHHHHHHHSSS-EEEEEE
T ss_pred HHHHHHHcCCCEE-EEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcc----cchhhheeccCCCEEEeec
Confidence 4556889996553 44443 57889999998875556899998887654 6788887764333334443
No 202
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=39.13 E-value=93 Score=28.97 Aligned_cols=59 Identities=10% Similarity=0.042 Sum_probs=36.1
Q ss_pred cCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC-CCCChHHHHH
Q 011289 307 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT-PRDVTPEATK 378 (489)
Q Consensus 307 ~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t-~~D~T~eav~ 378 (489)
.|+-...+.+.|++. |+++. +++.+.-.+. .++. ..+|.||.+||=+-- .+....+.++
T Consensus 8 ~dsf~~nl~~~l~~~-----~~~~~---v~~~~~~~~~-~~~~----~~~~~iilsgGP~~~~~~~~~~~~i~ 67 (191)
T PRK06774 8 YDSFTYNLYQYFCEL-----GTEVM---VKRNDELQLT-DIEQ----LAPSHLVISPGPCTPNEAGISLAVIR 67 (191)
T ss_pred CCchHHHHHHHHHHC-----CCcEE---EEeCCCCCHH-HHHh----cCCCeEEEcCCCCChHhCCCchHHHH
Confidence 477788999999998 88765 4443321221 1222 268999999998543 3334444443
No 203
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=38.87 E-value=79 Score=30.78 Aligned_cols=57 Identities=26% Similarity=0.238 Sum_probs=37.5
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
+|||+|+- .||. |+.--|..+ ++..|+++.+.-+-.-+... ++|.|+.-||-|
T Consensus 2 ~~kvaVi~------fpGt---------N~d~d~~~A-~~~aG~~~~~V~~~d~~~~~-----------~~d~vv~pGGFS 54 (231)
T COG0047 2 RPKVAVLR------FPGT---------NCDYDMAAA-FERAGFEAEDVWHSDLLLGR-----------DFDGVVLPGGFS 54 (231)
T ss_pred CceEEEEE------cCCc---------CchHHHHHH-HHHcCCCceEEEeeecccCC-----------CccEEEEcCCCC
Confidence 68999975 4544 344444444 55889998876443211111 489999999999
Q ss_pred CCCC
Q 011289 88 MGDK 91 (489)
Q Consensus 88 ~G~~ 91 (489)
.||+
T Consensus 55 yGDy 58 (231)
T COG0047 55 YGDY 58 (231)
T ss_pred cccc
Confidence 9875
No 204
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=38.87 E-value=57 Score=34.04 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCeEEEEEeecC-CHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 40 MLLAAAMQQHCKLIDLGIVRD-DEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~D-d~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
-+...|++.|+++..+...++ +.+.+.+.++.+.+.++|+||-.||=|+
T Consensus 38 ~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 87 (374)
T cd08183 38 WLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSV 87 (374)
T ss_pred HHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchH
Confidence 355668888998877764442 2356777777766667999999999776
No 205
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=38.80 E-value=52 Score=34.42 Aligned_cols=50 Identities=18% Similarity=0.367 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCeEEEEE-eecC-CHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLG-IVRD-DEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~-~v~D-d~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
..+.+.|++.|+++..+. +.++ +.+.+.+.++.+.+.++|.||-.||=|+
T Consensus 47 ~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 98 (382)
T cd08187 47 DRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSV 98 (382)
T ss_pred HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHH
Confidence 347778888898877664 3333 3467777777776667999998888665
No 206
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=38.36 E-value=98 Score=31.03 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 38 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
...+.+.+++.|++++.....+.+..++...+.++.+.++|.|++.+
T Consensus 149 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~~~~~~~d~v~~~~ 195 (333)
T cd06331 149 NRIARALLEELGGEVVGEEYLPLGTSDFGSVIEKIKAAGPDVVLSTL 195 (333)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCcccHHHHHHHHHHcCCCEEEEec
Confidence 45666677777877776666655555566666665554677776554
No 207
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=38.10 E-value=49 Score=26.53 Aligned_cols=46 Identities=17% Similarity=0.079 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
-..-++..|++.|+.+... +....+...++.|-..++.++|+.|.-
T Consensus 19 ~a~~la~~Lr~~g~~v~~d----~~~~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 19 LAEKLYAELQAAGVDVLLD----DRNERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHHHHCCCEEEEE----CCCCCcccchhHHHhcCCCEEEEECCc
Confidence 3566778888999887532 233478888888876789999999943
No 208
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=37.59 E-value=71 Score=38.78 Aligned_cols=67 Identities=25% Similarity=0.395 Sum_probs=42.7
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecC-CHHHHHHHHHHH---HhcCCCEEEE
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRD-DEEELEKTLDNA---FSAGIDILLT 82 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~D-d~~~i~~~l~~~---~~~~~Dlvit 82 (489)
.||||+|+. .||. |+-.-|..| +++.|+++... +..| ....|.+.+.++ ++ ++|+|+.
T Consensus 976 ~kpkvaIl~------~pGt---------Nce~d~a~A-f~~aG~~~~~v-~~~dl~~~~i~~s~~~~~~~l~-~~~~l~~ 1037 (1239)
T TIGR01857 976 EKPRVVIPV------FPGT---------NSEYDSAKA-FEKEGAEVNLV-IFRNLNEEALVESVETMVDEID-KSQILML 1037 (1239)
T ss_pred CCCeEEEEE------CCCC---------CCHHHHHHH-HHHcCCceEEE-EEecCcccccccchhhhhcccc-cCcEEEE
Confidence 579999976 4554 344445544 45699996654 4444 333344443322 44 5999999
Q ss_pred eCCCcCCCC
Q 011289 83 SGGVSMGDK 91 (489)
Q Consensus 83 tGG~s~G~~ 91 (489)
-||-|.||+
T Consensus 1038 pGGFSyGD~ 1046 (1239)
T TIGR01857 1038 PGGFSAGDE 1046 (1239)
T ss_pred cCccCcccc
Confidence 999999986
No 209
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=37.53 E-value=65 Score=32.46 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=42.5
Q ss_pred eCCeEEEEecCCcCcCCCCC--C----CC----CCcE--EcChHHHHHHHHHhCCCeEEEEEeecCCHH----HHHHHHH
Q 011289 7 RTPTIAVLSTGDELVEPTTQ--C----LD----RGQI--RDSNRAMLLAAAMQQHCKLIDLGIVRDDEE----ELEKTLD 70 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~--~----~~----~g~i--~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~----~i~~~l~ 70 (489)
++.|++|+.+|+ |.. . .. ..+| .=||.+-+.++.+++|..+..+..-+++.+ ++.+.|+
T Consensus 88 ~~~ri~vl~Sg~-----gsnl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~ 162 (286)
T PRK06027 88 ERKRVVILVSKE-----DHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTKETKAEAEARLLELID 162 (286)
T ss_pred cCcEEEEEEcCC-----CCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccCccccchhHHHHHHHHH
Confidence 678999999996 211 0 01 1222 225667778888888888766543333333 3444444
Q ss_pred HHHhcCCCEEEEeC
Q 011289 71 NAFSAGIDILLTSG 84 (489)
Q Consensus 71 ~~~~~~~DlvittG 84 (489)
+. +.|+|++.|
T Consensus 163 ~~---~~Dlivlag 173 (286)
T PRK06027 163 EY---QPDLVVLAR 173 (286)
T ss_pred Hh---CCCEEEEec
Confidence 43 589999988
No 210
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=37.29 E-value=52 Score=34.45 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCeEEEEEeecC--CHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 40 MLLAAAMQQHCKLIDLGIVRD--DEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~D--d~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
-+.+.|++.|.++..+.-+.. +.+.+.+.++.+.+.++|+||-.||=|+
T Consensus 46 ~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 96 (383)
T cd08186 46 KVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSP 96 (383)
T ss_pred HHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 567788888988776643332 3466777777666667999998888665
No 211
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=37.26 E-value=1.9e+02 Score=26.95 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC-CeEEeee
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYFNKV 109 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G-~~~f~~v 109 (489)
-...+...+++.|+++..+.. ..+++...+.+++++++++|.||..+....... ..+.+.+.+ .+++.+.
T Consensus 17 ~~~g~~~~~~~~g~~l~~~~~-~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~--~~~~l~~~~ip~v~~~~ 87 (264)
T cd01537 17 VLKGIEEAAKAAGYQVLLANS-QNDAEKQLSALENLIARGVDGIIIAPSDLTAPT--IVKLARKAGIPVVLVDR 87 (264)
T ss_pred HHHHHHHHHHHcCCeEEEEeC-CCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh--HHHHhhhcCCCEEEecc
Confidence 344556678889988765543 446677888888887767999999764432211 234444455 4554433
No 212
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=36.81 E-value=51 Score=26.57 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=41.7
Q ss_pred EEEEecCC---cCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 11 IAVLSTGD---ELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 11 V~iistGd---El~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
|+|++.|+ ++. .-..-|...|++.|+.+.. .+....+.+.+++|-..++-++|+.|
T Consensus 2 v~Ii~~~~~~~~~~--------------~~a~~l~~~L~~~gi~v~~----d~~~~~~~k~~~~a~~~g~p~~iiiG 60 (94)
T PF03129_consen 2 VVIIPVGKKDEEII--------------EYAQELANKLRKAGIRVEL----DDSDKSLGKQIKYADKLGIPFIIIIG 60 (94)
T ss_dssp EEEEESSCSHHHHH--------------HHHHHHHHHHHHTTSEEEE----ESSSSTHHHHHHHHHHTTESEEEEEE
T ss_pred EEEEEeCCCcHHHH--------------HHHHHHHHHHHHCCCEEEE----ECCCCchhHHHHHHhhcCCeEEEEEC
Confidence 67777776 433 3456788899999987643 33556778999998777899999988
No 213
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=36.79 E-value=1.7e+02 Score=30.37 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcC-CCEEEEeCCC
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAG-IDILLTSGGV 86 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~-~DlvittGG~ 86 (489)
....+...+++.|.+++....++.+..++.+.|+++...+ +|+||..+-.
T Consensus 148 ~~~~l~~~l~~~gi~v~~~~~~~~~~~d~~~~L~~lk~~~~~~viv~~~~~ 198 (382)
T cd06371 148 TAQKLASALRAHGLPVGLVTSMGPDEKGAREALKKVRSADRVRVVIMCMHS 198 (382)
T ss_pred HHHHHHHHHHHCCCcEEEEEEecCCHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 4566777888899988876667766778888888886544 6899987654
No 214
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=36.71 E-value=1e+02 Score=34.03 Aligned_cols=101 Identities=15% Similarity=0.237 Sum_probs=69.6
Q ss_pred eeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEee-cC---------------CHHHHHHHH
Q 011289 6 YRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIV-RD---------------DEEELEKTL 69 (489)
Q Consensus 6 ~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v-~D---------------d~~~i~~~l 69 (489)
+.||.|+|+++.+|+++.. +-.+.-.-.++.-+++.|.-...+++. -+ +++.|...+
T Consensus 40 ~~kP~IgI~~s~~d~~p~h-------~hl~~l~~~vk~~i~~aGg~p~ef~t~~v~DGiamG~~GM~~SL~SRelIAds~ 112 (575)
T COG0129 40 FGKPIIGIANSYNDMVPGH-------QHLKDLAQLVKEGIREAGGVPVEFGTIAVCDGIAMGHDGMPYSLPSRELIADSV 112 (575)
T ss_pred cCCCeEEEEeccccCcCch-------hhHHHHHHHHHHHHHHcCCceeEeCCCCccCccccCCCCcccccccHHHHHHHH
Confidence 4799999999999998433 335566677888889998777766543 23 378899888
Q ss_pred HHHHh-cCCCEEEEeCCCcCCCCCchHHHH---HhcC--CeEEeeeeecCCCce
Q 011289 70 DNAFS-AGIDILLTSGGVSMGDKDFVKPLL---QKKG--TIYFNKVCMKPGKPL 117 (489)
Q Consensus 70 ~~~~~-~~~DlvittGG~s~G~~D~~~~~l---~~~G--~~~f~~v~~kPGkp~ 117 (489)
+..+. ..+|-+|..||-=. .++-.| .++. .+...+=.|.||++-
T Consensus 113 e~~~~~~~~Da~V~i~~CDK----i~PG~lmaa~r~niPaIfv~gGpM~~G~~~ 162 (575)
T COG0129 113 EEVLSAHPFDGVVLIGGCDK----ITPGMLMAAARLNIPAIFVSGGPMLAGKVN 162 (575)
T ss_pred HHHHhccCcceEEEecCCCC----ccHHHHHHHHhcCCCEEEecCCcCCCCccC
Confidence 88876 34799999987422 334333 2333 466667677777643
No 215
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=36.62 E-value=55 Score=31.55 Aligned_cols=64 Identities=28% Similarity=0.323 Sum_probs=48.9
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHh
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQK 100 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~ 100 (489)
.||-+--+.+++++.... +.+..-+|+ .+++-++..++++++|-|+.-||.| |+-|++-.-+.-
T Consensus 51 fDSv~~e~~~~~~~~~~~-~~f~~eKd~-TD~elAl~~a~e~g~d~i~i~Ga~G-GR~DH~l~nl~l 114 (212)
T COG1564 51 FDSVSEELLAYYKEKTVT-IKFPAEKDS-TDLELALDEALERGADEIVILGALG-GRLDHALANLFL 114 (212)
T ss_pred ccccCHHHHHHHhhcCcc-eecChhhcc-chHHHHHHHHHHcCCCEEEEEecCC-ChHHHHHHHHHH
Confidence 477777888888887765 555555554 6678888888888899999999999 599987665543
No 216
>PRK11914 diacylglycerol kinase; Reviewed
Probab=36.32 E-value=96 Score=31.18 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=36.8
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
-+...|++.|+++..+ .........+..++++++++|+||..||=|. +.+++..+
T Consensus 30 ~~~~~l~~~g~~~~~~--~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGT-----i~evv~~l 84 (306)
T PRK11914 30 RAIARLHHRGVDVVEI--VGTDAHDARHLVAAALAKGTDALVVVGGDGV-----ISNALQVL 84 (306)
T ss_pred HHHHHHHHcCCeEEEE--EeCCHHHHHHHHHHHHhcCCCEEEEECCchH-----HHHHhHHh
Confidence 4566788999876543 2333445555555555556899999999774 66777655
No 217
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=35.85 E-value=1.1e+02 Score=34.03 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=71.3
Q ss_pred eeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeec-----------------CCHHHH
Q 011289 3 VKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVR-----------------DDEEEL 65 (489)
Q Consensus 3 V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~-----------------Dd~~~i 65 (489)
+....||.|+|+++.+|+.+.. +-++.-.-.+++.+++.|..+...+-++ =++|.|
T Consensus 59 ~~~~~kP~IgIvns~~d~~p~h-------~hl~~~~~~vk~~i~~aGg~~~~~Gg~~a~cDGit~G~~GM~~SL~SRdlI 131 (601)
T TIGR01196 59 LGSMKRPNLAIITAYNDMLSAH-------QPFKNYPDLIKKALQEANAVAQVAGGVPAMCDGVTQGYDGMELSLFSRDVI 131 (601)
T ss_pred HhccCCCEEEEEeccccCcccc-------ccHHHHHHHHHHHHHHCCCEeEEeCCcCccCCCccCCCcccchhhhcHHHH
Confidence 4567899999999999998543 4467777888999999999888883211 136788
Q ss_pred HHHHHHHHh-cCCCEEEEeCCCcCCCCCch-HHH---HHhcC---CeEEeeeeecCCC
Q 011289 66 EKTLDNAFS-AGIDILLTSGGVSMGDKDFV-KPL---LQKKG---TIYFNKVCMKPGK 115 (489)
Q Consensus 66 ~~~l~~~~~-~~~DlvittGG~s~G~~D~~-~~~---l~~~G---~~~f~~v~~kPGk 115 (489)
...++..+. ...|-+|..||- |-+ +-. ..++| .+++.+=.|.||.
T Consensus 132 A~sie~~l~~~~fDg~v~l~~C-----DKivPG~lMaA~r~g~lP~IfV~gGpM~~G~ 184 (601)
T TIGR01196 132 AMSTAIGLSHNMFDGALFLGVC-----DKIVPGLLIGALSFGHLPAVFVPSGPMVSGI 184 (601)
T ss_pred HHHHHHHhcCCCcceeEEeccC-----CCCcHHHHHHHHhcCCCCEEEEeCCCcCCCC
Confidence 888888765 347999999873 433 322 23454 4666666777774
No 218
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=35.58 E-value=70 Score=32.97 Aligned_cols=57 Identities=23% Similarity=0.179 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCeEEEEEeecC-CHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHH
Q 011289 38 RAMLLAAAMQQHCKLIDLGIVRD-DEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKP 96 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~D-d~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~ 96 (489)
..-+...|++.|+++.....-++ +.+.+.+.++.+.+.++|+||-.||=|+ -|..+-
T Consensus 38 ~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~--~D~aK~ 95 (349)
T cd08550 38 RPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKT--LDTAKA 95 (349)
T ss_pred HHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHH--HHHHHH
Confidence 45667778887865433322233 5667777777776657999999888665 344443
No 219
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=35.57 E-value=1.6e+02 Score=29.35 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHH-------------HHHHHHhcCCCEEEEeCCCcCCC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEK-------------TLDNAFSAGIDILLTSGGVSMGD 90 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~-------------~l~~~~~~~~DlvittGG~s~G~ 90 (489)
.++.+++++..-. ..+.++..|+++.++ .+.+++. ++|+||..||....+
T Consensus 16 ~~l~~~l~~l~~~-~~~~v~s~~p~~~~~~~~v~~~~r~~~~~~~~~l~-~~D~vI~gGG~l~~d 78 (298)
T TIGR03609 16 ALLAALLRELPPG-VEPTVLSNDPAETAKLYGVEAVNRRSLLAVLRALR-RADVVIWGGGSLLQD 78 (298)
T ss_pred HHHHHHHHhcCCC-CeEEEecCChHHHHhhcCceEEccCCHHHHHHHHH-HCCEEEECCcccccC
Confidence 3455555555422 224455555555321 2334555 499999999987764
No 220
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=35.55 E-value=2.1e+02 Score=25.08 Aligned_cols=60 Identities=25% Similarity=0.280 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCeEEEEEee-------cCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHH--HHhcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIV-------RDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPL--LQKKG 102 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v-------~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~--l~~~G 102 (489)
.-....|++.|+++...... .-|..-..++++.+.+...|.++..- |+.||++.+ +++.|
T Consensus 55 ~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvS----gD~Df~~~i~~lr~~G 123 (149)
T cd06167 55 RGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVS----GDSDFVPLVERLRELG 123 (149)
T ss_pred HHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEE----CCccHHHHHHHHHHcC
Confidence 44566688999999877643 13455566777766654466666554 377987764 45556
No 221
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=35.53 E-value=72 Score=29.76 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=30.1
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCC
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF 367 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~ 367 (489)
|+-++.++++|++. |+++..+..-..+.+ . ++ .+|.||.+||-|.
T Consensus 11 dsf~~~i~~~l~~~-----g~~~~v~~~~~~~~~-------~-l~--~~d~iIi~gGp~~ 55 (190)
T PRK06895 11 DSFTFNLVDLIRKL-----GVPMQVVNVEDLDLD-------E-VE--NFSHILISPGPDV 55 (190)
T ss_pred CchHHHHHHHHHHc-----CCcEEEEECCccChh-------H-hc--cCCEEEECCCCCC
Confidence 55556789999998 887665543222221 1 23 6899999999884
No 222
>PRK14558 pyrH uridylate kinase; Provisional
Probab=35.35 E-value=1.8e+02 Score=27.93 Aligned_cols=65 Identities=15% Similarity=0.047 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCH---HHHHHHHHHHHhcCCCEEEEeCCC--cCCCCCchHHHHHh-cC
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDE---EELEKTLDNAFSAGIDILLTSGGV--SMGDKDFVKPLLQK-KG 102 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~---~~i~~~l~~~~~~~~DlvittGG~--s~G~~D~~~~~l~~-~G 102 (489)
|..++...|.++|.....+..+-... ..-.+.+.+.++. -.+.|++|+. ..++.|++...+.+ ++
T Consensus 76 n~~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~i~~ll~~-g~vpV~~G~~~~~~~~~D~~a~~lA~~l~ 146 (231)
T PRK14558 76 NALYLKDIFEKSGLKAVIVSQIVNLPSVEPINYDDIELYFRA-GYIVIFAGGTSNPFFTTDTAAALRAVEMK 146 (231)
T ss_pred HHHHHHHHHHHcCCCeEEeccccccchhhhhhHHHHHHHHHC-CCEEEEECCCCCCCCCcHHHHHHHHHHcC
Confidence 55667888999998865554332211 2224566677764 5788888864 45778999888876 55
No 223
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=35.33 E-value=88 Score=31.83 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEe
Q 011289 38 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTS 83 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlvitt 83 (489)
|...-.+++.+|+..+.+-.-+||.+++++.|+.. +||-|||-
T Consensus 174 G~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~l---GA~~ViTe 216 (354)
T KOG0025|consen 174 GQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSL---GATEVITE 216 (354)
T ss_pred HHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHc---CCceEecH
Confidence 45566788999999888777788999999999884 79999873
No 224
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=35.28 E-value=84 Score=32.37 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCeEEEEEeecC-CHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHH
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRD-DEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKP 96 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~D-d~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~ 96 (489)
..+...|++.|.++....+.++ +.+.+.+.++.+.+.++|+||-.||=|+ -|..+-
T Consensus 39 ~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~--iD~aK~ 95 (351)
T cd08170 39 AKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKT--LDTAKA 95 (351)
T ss_pred HHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchh--hHHHHH
Confidence 3456677888888764444332 2355777777766657999999998775 454443
No 225
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=35.24 E-value=1.3e+02 Score=30.23 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
....+...+++.|++++.....+.+...+...++++.+.++|+|+..+.
T Consensus 157 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~ 205 (345)
T cd06338 157 VAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGH 205 (345)
T ss_pred HHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCc
Confidence 3456677889999999876666544456666777766656899987664
No 226
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=35.11 E-value=97 Score=26.11 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=39.4
Q ss_pred CcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 31 GQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 31 g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
+.....+..+++..+++.|+++..++.. ...+.+.+.+.+. +.|+|..|.-+.
T Consensus 9 ~~~h~lg~~~~~~~l~~~G~~v~~l~~~-~~~~~~~~~i~~~---~pdiV~iS~~~~ 61 (125)
T cd02065 9 GDVHDIGKNIVAIALRDNGFEVIDLGVD-VPPEEIVEAAKEE---DADVVGLSALST 61 (125)
T ss_pred CchhhHHHHHHHHHHHHCCCEEEEcCCC-CCHHHHHHHHHHc---CCCEEEEecchH
Confidence 3345677789999999999999988653 3456666776652 599999986543
No 227
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.09 E-value=1.7e+02 Score=27.14 Aligned_cols=72 Identities=11% Similarity=0.213 Sum_probs=43.3
Q ss_pred EEEeCCcccCCCccCC---c--hHHHHHHHHccccccCCcEEEEEEEcCCCH------HHHHHHH-HHhhhcCCCcEEEE
Q 011289 294 ILTVSDTVASGAGPDR---S--GPRAVSVVNSSSEKLGGAKVVATDVVPDDV------GKIKEVL-RRWSDIDKMDLILT 361 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~---n--~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~------~~I~~~l-~~~~~~~~~DlVIt 361 (489)
|+..||.+..|.-... + ...+++.|.+..... ++++...++-.|.- +.+.+-+ +..+.....|+|+.
T Consensus 2 iv~~GDSiT~G~~~~~~~~~~w~~~l~~~l~~~~~~~-~~~v~N~Gi~G~t~~~~~~~~~~l~r~~~~v~~~~~p~~vii 80 (204)
T cd01830 2 VVALGDSITDGRGSTPDANNRWPDLLAARLAARAGTR-GIAVLNAGIGGNRLLADGLGPSALARFDRDVLSQPGVRTVII 80 (204)
T ss_pred EEEEecccccCCCCCCCCCCcCHHHHHHHHHhccCCC-CcEEEECCccCcccccCCCChHHHHHHHHHHhcCCCCCEEEE
Confidence 6788999988754322 2 233444454331111 77888888888864 2344444 33443235899999
Q ss_pred eCCCC
Q 011289 362 LGGTG 366 (489)
Q Consensus 362 tGG~G 366 (489)
..|+=
T Consensus 81 ~~G~N 85 (204)
T cd01830 81 LEGVN 85 (204)
T ss_pred ecccc
Confidence 88875
No 228
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=35.09 E-value=1.3e+02 Score=27.72 Aligned_cols=51 Identities=14% Similarity=-0.018 Sum_probs=33.2
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCC
Q 011289 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKD 92 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D 92 (489)
|+-..++..+|++.|+++..+..-.++ +.+ .+. . ++|.||++||-+.-.+|
T Consensus 8 ~~~~~~~~~~l~~~G~~~~~~~~~~~~-~~~----~~~-~-~~dgvil~gG~~~~~~~ 58 (184)
T cd01743 8 DSFTYNLVQYLRELGAEVVVVRNDEIT-LEE----LEL-L-NPDAIVISPGPGHPEDA 58 (184)
T ss_pred CccHHHHHHHHHHcCCceEEEeCCCCC-HHH----Hhh-c-CCCEEEECCCCCCcccc
Confidence 556678999999999988766553332 222 122 3 48999988887644343
No 229
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=35.00 E-value=1.6e+02 Score=28.27 Aligned_cols=79 Identities=19% Similarity=0.144 Sum_probs=55.1
Q ss_pred EEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCCh
Q 011289 294 ILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVT 373 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T 373 (489)
|+.||-|-..|...|. ++.+++.|.+. ...|.++ ....+|=+.+...+.+..+++..+.|+||-.|=-| +.+.++
T Consensus 3 vLiTGF~PF~g~~~NP-S~~~v~~L~~~--~~~~~~v-~~~~LPv~~~~~~~~l~~~~~~~~Pd~vl~~G~a~-~r~~i~ 77 (209)
T PRK13193 3 VLLFGFEPFLEYKENP-SQLIVEALNGS--TILKEEV-KGVILPVEYEKIEDLIVTKIREMKPILTLGIGVAP-GRAKIT 77 (209)
T ss_pred EEEEeeCCCCCCCCCc-HHHHHHHhhcc--ccCCceE-EEEEeCCcHHHHHHHHHHHHHHHCCCEEEEecccC-CcCceE
Confidence 7888988887665444 45556666553 1226666 45789999999999988887755899999887444 556666
Q ss_pred HHHH
Q 011289 374 PEAT 377 (489)
Q Consensus 374 ~eav 377 (489)
.|-+
T Consensus 78 lEr~ 81 (209)
T PRK13193 78 PEKI 81 (209)
T ss_pred EEEE
Confidence 6643
No 230
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=34.98 E-value=1.2e+02 Score=28.50 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=37.6
Q ss_pred cCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCC-CCCCChHHHHHH
Q 011289 307 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF-TPRDVTPEATKE 379 (489)
Q Consensus 307 ~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~-t~~D~T~eav~~ 379 (489)
.|+....+.++|++. |+++..+..-..+.++| .. .++|.||.+||=|- ...+...+.++.
T Consensus 8 ~dsft~nl~~~l~~~-----g~~v~v~~~~~~~~~~~----~~----~~~d~iIlsgGP~~p~~~~~~~~~i~~ 68 (195)
T PRK07649 8 YDSFTFNLVQFLGEL-----GQELVVKRNDEVTISDI----EN----MKPDFLMISPGPCSPNEAGISMEVIRY 68 (195)
T ss_pred CCccHHHHHHHHHHC-----CCcEEEEeCCCCCHHHH----hh----CCCCEEEECCCCCChHhCCCchHHHHH
Confidence 477778899999998 88776554222233332 21 26899999999753 333344555554
No 231
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=34.98 E-value=1.1e+02 Score=32.23 Aligned_cols=50 Identities=8% Similarity=0.140 Sum_probs=35.8
Q ss_pred HHHHHHHHccccccCCcEEEEEEEcCCCH--HHHHHHHHHhhhcCCCcEEEEeCCCCC
Q 011289 312 PRAVSVVNSSSEKLGGAKVVATDVVPDDV--GKIKEVLRRWSDIDKMDLILTLGGTGF 367 (489)
Q Consensus 312 ~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~--~~I~~~l~~~~~~~~~DlVIttGG~G~ 367 (489)
..+.+.|++. |+++....-+..|+ +.+.+.++.+.+ .++|.||-.||=|+
T Consensus 67 ~~v~~~L~~~-----gi~~~~~~~v~~~P~~~~v~~~~~~~r~-~~~D~IiavGGGS~ 118 (395)
T PRK15454 67 AGLTRSLAVK-----GIAMTLWPCPVGEPCITDVCAAVAQLRE-SGCDGVIAFGGGSV 118 (395)
T ss_pred HHHHHHHHHc-----CCeEEEECCCCCCcCHHHHHHHHHHHHh-cCcCEEEEeCChHH
Confidence 4577788887 88876664444444 567777776654 69999999998664
No 232
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=34.93 E-value=1.5e+02 Score=29.94 Aligned_cols=87 Identities=14% Similarity=0.226 Sum_probs=52.7
Q ss_pred ceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcC---CCHHHHHHHHHHhhhcC---CCcEEEEe
Q 011289 289 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVP---DDVGKIKEVLRRWSDID---KMDLILTL 362 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~---Dd~~~I~~~l~~~~~~~---~~DlVItt 362 (489)
+-+|||||- .+|..+..+++-..+.++.+++..+.+.= +-+++|.++|+.+-... .+|+||..
T Consensus 14 p~~I~vITs-----------~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~ 82 (319)
T PF02601_consen 14 PKRIAVITS-----------PTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIII 82 (319)
T ss_pred CCEEEEEeC-----------CchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEe
Confidence 359999984 23455555555555555566776666554 66788999999986422 48999877
Q ss_pred CCCCCCC--CCChHHHHHHh-hccccc
Q 011289 363 GGTGFTP--RDVTPEATKEL-IERETP 386 (489)
Q Consensus 363 GG~G~t~--~D~T~eav~~~-~~~~l~ 386 (489)
=|=|.-. .-|--|.++++ ...++|
T Consensus 83 RGGGs~eDL~~FN~e~varai~~~~~P 109 (319)
T PF02601_consen 83 RGGGSIEDLWAFNDEEVARAIAASPIP 109 (319)
T ss_pred cCCCChHHhcccChHHHHHHHHhCCCC
Confidence 4434322 23444555554 344443
No 233
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.35 E-value=1.2e+02 Score=30.52 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 38 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
...+...+++.|.+++.....+.+...+...+.++...++|+|+..+.
T Consensus 152 ~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~ 199 (340)
T cd06349 152 ADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILISY 199 (340)
T ss_pred HHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEccc
Confidence 456777888999999876655444445666666665556999988774
No 234
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=34.15 E-value=82 Score=33.43 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCeEEEEEe-ec-CCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGI-VR-DDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~-v~-Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
.-+...|++.|.++..+.- .+ .+.+.+.+.++.+.+.++|+||-.||=|+
T Consensus 41 ~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSv 92 (414)
T cd08190 41 KVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSV 92 (414)
T ss_pred HHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 4466778888988876643 32 34567777777777667999999999776
No 235
>PRK10780 periplasmic chaperone; Provisional
Probab=34.09 E-value=60 Score=29.76 Aligned_cols=40 Identities=15% Similarity=0.424 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhhcCCCcEEEEeCCCCC--CCCCChHHHHHHh
Q 011289 341 GKIKEVLRRWSDIDKMDLILTLGGTGF--TPRDVTPEATKEL 380 (489)
Q Consensus 341 ~~I~~~l~~~~~~~~~DlVIttGG~G~--t~~D~T~eav~~~ 380 (489)
..|.++++......++|+|+..+++=- ...|+|.+++.++
T Consensus 123 ~ki~~ai~~vak~~gy~~Vld~~~v~Y~~~~~DIT~~Vik~l 164 (165)
T PRK10780 123 TRIQTAVKSVANKQGYDLVVDANAVAYNSSDKDITADVLKQV 164 (165)
T ss_pred HHHHHHHHHHHHHcCCeEEEeCCceeeeCCCCCchHHHHHhh
Confidence 345566666556679999998665432 4579999998764
No 236
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=33.74 E-value=1.3e+02 Score=30.37 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
..+...+++.|++++.....+.+..++...+.++.+.++|+|+++.
T Consensus 154 ~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~V~~~~ 199 (333)
T cd06328 154 AAFKAALEKLGAAIVTEEYAPTDTTDFTPYAQRLLDALKKVLFVIW 199 (333)
T ss_pred HHHHHHHHhCCCEEeeeeeCCCCCcchHHHHHHHHhcCCCEEEEEe
Confidence 4567788889999988777766556677777776665799998764
No 237
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=33.72 E-value=66 Score=33.32 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCeEEEEEee-c-CCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIV-R-DDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v-~-Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
.-+...|++.|.++..+.-+ + -+.+.+.+.++.+.+.++|+||-.||=|+
T Consensus 44 ~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSv 95 (357)
T cd08181 44 DDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSP 95 (357)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 34777788889888766433 2 23455777777776667999999998775
No 238
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=33.67 E-value=1.7e+02 Score=26.36 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=45.5
Q ss_pred EEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHh--CCCeEEEEEeecCCHHH-HHHHHHHHHhcCCCEEEEeCCC
Q 011289 13 VLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQ--QHCKLIDLGIVRDDEEE-LEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 13 iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~--~G~~~~~~~~v~Dd~~~-i~~~l~~~~~~~~DlvittGG~ 86 (489)
|+.-||-+..-... .....-..+=...|...+.+ .++++...++-.+.... +...+..++..+.|+||+.-|+
T Consensus 2 i~~~GDSit~G~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~N~g~~G~~~~~~~~~~~~~~~~~~~d~vii~~G~ 77 (185)
T cd01832 2 YVALGDSITEGVGD-PVPDGGYRGWADRLAAALAAADPGIEYANLAVRGRRTAQILAEQLPAALALRPDLVTLLAGG 77 (185)
T ss_pred eeEecchhhcccCC-CCCCCccccHHHHHHHHhcccCCCceEeeccCCcchHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 67778887742221 11112223444555555543 37889999998888775 3455666655568999998876
No 239
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=33.66 E-value=85 Score=31.67 Aligned_cols=37 Identities=27% Similarity=0.545 Sum_probs=28.7
Q ss_pred CCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeC
Q 011289 326 GGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLG 363 (489)
Q Consensus 326 ~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttG 363 (489)
.|+++.....++++.+.+.+.++++.+ +++|+||++|
T Consensus 33 ~~i~~~~~e~~~~~~~~~~~~~~~~~~-~g~dlIi~~g 69 (306)
T PF02608_consen 33 DGIEIIYVENVPETDADYEEAIRQLAD-QGYDLIIGHG 69 (306)
T ss_dssp TTEEEEEEES-S-TCHHHHHHHHHHHH-TT-SEEEEES
T ss_pred CCceEEEEecCCccHHHHHHHHHHHHH-cCCCEEEEcc
Confidence 478999999988556788888888876 6999999988
No 240
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=33.64 E-value=1.4e+02 Score=27.56 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=44.3
Q ss_pred EEEeCCcccCCCccC----CchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHH--HHHHhhhc-CCCcEEEEeCCCC
Q 011289 294 ILTVSDTVASGAGPD----RSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKE--VLRRWSDI-DKMDLILTLGGTG 366 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D----~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~--~l~~~~~~-~~~DlVIttGG~G 366 (489)
|+.+||.+..|...+ .-...+.+.+. . ++++...++-.+....+.. .+...+.. ..+|+||...|+=
T Consensus 3 i~~~GDS~t~G~~~~~~~~~w~~~l~~~~~-~-----~~~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~N 76 (198)
T cd01821 3 IFLAGDSTVADYDPGAPQAGWGQALPQYLD-T-----GITVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHN 76 (198)
T ss_pred EEEEecCCcccCCCCCCCCChHHHHHHHhC-C-----CCEEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCC
Confidence 677899999887553 22222444332 1 6789999999988765542 23333321 1689999999876
Q ss_pred CCCC
Q 011289 367 FTPR 370 (489)
Q Consensus 367 ~t~~ 370 (489)
-...
T Consensus 77 D~~~ 80 (198)
T cd01821 77 DQKP 80 (198)
T ss_pred CCCC
Confidence 5433
No 241
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=33.34 E-value=80 Score=32.91 Aligned_cols=49 Identities=24% Similarity=0.173 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCeEEEEEeec--CCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 40 MLLAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~--Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
-+...|++.|.++..+.-+. -+.+.+.+.++.+.+.++|+||-.||=|+
T Consensus 45 ~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~ 95 (374)
T cd08189 45 KVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSV 95 (374)
T ss_pred HHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 46777888898887665443 23455777777776667999998888665
No 242
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=33.31 E-value=65 Score=32.93 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHhCCCeEEEEEe----------ecC------------------CHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLGI----------VRD------------------DEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~----------v~D------------------d~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
.|+.++.++|++.|.....+.+ ..+ +.+.+.+.+++.+. +.|+|+.+|..
T Consensus 62 ~tg~~~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~-~~d~VvlsGSl 139 (310)
T COG1105 62 FTGEFFVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLE-SDDIVVLSGSL 139 (310)
T ss_pred ccHHHHHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEecCCCCCCCHHHHHHHHHHHHHhcc-cCCEEEEeCCC
Confidence 6788999999999876555432 111 24556777777666 58999999943
No 243
>PLN02335 anthranilate synthase
Probab=33.12 E-value=1.3e+02 Score=29.02 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=43.0
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC-
Q 011289 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG- 366 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G- 366 (489)
...+|.||-- .|+-...++++|++. |+++..+ +.|...+.+ +.. .++|.||.+||=|
T Consensus 17 ~~~~ilviD~---------~dsft~~i~~~L~~~-----g~~~~v~---~~~~~~~~~-~~~----~~~d~iVisgGPg~ 74 (222)
T PLN02335 17 QNGPIIVIDN---------YDSFTYNLCQYMGEL-----GCHFEVY---RNDELTVEE-LKR----KNPRGVLISPGPGT 74 (222)
T ss_pred ccCcEEEEEC---------CCCHHHHHHHHHHHC-----CCcEEEE---ECCCCCHHH-HHh----cCCCEEEEcCCCCC
Confidence 3456666543 245568899999998 8776655 333111111 221 2689999999988
Q ss_pred CCCCCChHHHHHHh
Q 011289 367 FTPRDVTPEATKEL 380 (489)
Q Consensus 367 ~t~~D~T~eav~~~ 380 (489)
+...|...+.+.++
T Consensus 75 p~d~~~~~~~~~~~ 88 (222)
T PLN02335 75 PQDSGISLQTVLEL 88 (222)
T ss_pred hhhccchHHHHHHh
Confidence 55445666666554
No 244
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=33.03 E-value=63 Score=31.62 Aligned_cols=70 Identities=10% Similarity=0.080 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhCCCeEEEEEee--c--CCHHHHHHHHHHHHhcCCCEEEEeCCCcCCC--CCchHHHHH-hcC-CeEEee
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIV--R--DDEEELEKTLDNAFSAGIDILLTSGGVSMGD--KDFVKPLLQ-KKG-TIYFNK 108 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v--~--Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~--~D~~~~~l~-~~G-~~~f~~ 108 (489)
|+.+|.+.|++.|.+...+.-. | -++...+++++ +++ +..+||..||++..- -|-+..... +++ .+++..
T Consensus 83 Nal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~-~l~-~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~a 160 (238)
T COG0528 83 NALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIR-HLE-KGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKA 160 (238)
T ss_pred HHHHHHHHHHhcCCcceecccccCccccCccCHHHHHH-HHH-cCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEe
Confidence 8889999999999876655432 2 23444555554 444 479999999887543 355444443 355 566543
No 245
>PF14164 YqzH: YqzH-like protein
Probab=32.86 E-value=37 Score=26.24 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGI 77 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~ 77 (489)
-|+...|+++|.++.....-+++.+.|.+.+.....++.
T Consensus 8 Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~~~~ 46 (64)
T PF14164_consen 8 KMIINCLRQYGYDVECMPLSDEEWEELCKHIQERKNEEP 46 (64)
T ss_pred HHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 478889999999999888899999999999998876433
No 246
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=32.83 E-value=1e+02 Score=26.40 Aligned_cols=45 Identities=7% Similarity=-0.068 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
-..-++..|++.|+.+.. .+. ..+...++.|-..++..+|+.|..
T Consensus 43 ~a~~la~~LR~~gi~v~~----d~~-~sl~kqlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 43 IAKEISEELRELGFSVKY----DDS-GSIGRRYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred HHHHHHHHHHHCCCEEEE----eCC-CCHHHHHHHhHhcCCCEEEEECcC
Confidence 345677889999987753 234 678888888877789999999954
No 247
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=32.71 E-value=1.3e+02 Score=30.32 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=43.9
Q ss_pred eeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 6 YRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 6 ~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
+...+|+++...++- | ......+.+.+++.|++++.....+.+...+...+.++...++|+|+..+.
T Consensus 142 ~~~~~va~l~~~~~~----------g---~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~ 208 (344)
T cd06345 142 HGFKTAAIVAEDAAW----------G---KGIDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGFS 208 (344)
T ss_pred CCCceEEEEecCchh----------h---hHHHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHhcCCCEEEEeec
Confidence 344678887654321 1 233456678888899998876666554455666666665556899988663
No 248
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=32.71 E-value=2e+02 Score=26.83 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC-CeEEeee
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYFNKV 109 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G-~~~f~~v 109 (489)
.-+...+++.|+++..+ ...+|++...+.++.+..+++|.||..+..+.... + +.+.+.| .+++.+.
T Consensus 19 ~g~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~--~-~~~~~~~ipvv~~~~ 86 (264)
T cd06267 19 RGIEEAAREAGYSVLLC-NSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL--L-EELAALGIPVVLVDR 86 (264)
T ss_pred HHHHHHHHHcCCEEEEE-cCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH--H-HHHHHcCCCEEEecc
Confidence 34555677789887654 44566777888888888777999999887654333 3 3344555 5555443
No 249
>PRK09273 hypothetical protein; Provisional
Probab=32.20 E-value=90 Score=30.04 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=38.9
Q ss_pred HHHHHHHccccccCCcEEEEEEEcC-----CCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011289 313 RAVSVVNSSSEKLGGAKVVATDVVP-----DDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 313 ~l~~~l~~~~~~~~G~~v~~~~~v~-----Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
.+.+.|++. |++|..++.-. -|.-++...+...+....+|..|+.-|||.|
T Consensus 21 ~L~~~L~~~-----G~eV~D~G~~~~~~~s~dYpd~a~~vA~~V~~g~~d~GIliCGTGiG 76 (211)
T PRK09273 21 ALKKVADPK-----GHEVFNYGMYDEEDHQLTYVQNGIMASILLNSKAVDFVVTGCGTGQG 76 (211)
T ss_pred HHHHHHHHC-----CCEEEEeCCCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCcHHH
Confidence 444566666 99999999643 2566777777777766689999999999966
No 250
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.11 E-value=1.3e+02 Score=28.95 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=33.2
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
-+...+++.|+++.... ..++++...+.++.+..+++|.||+++
T Consensus 20 ~i~~~~~~~g~~v~~~~-~~~~~~~~~~~i~~~~~~~~Dgiii~~ 63 (282)
T cd06318 20 AAKAHAKALGYELISTD-AQGDLTKQIADVEDLLTRGVNVLIINP 63 (282)
T ss_pred HHHHHHHHcCCEEEEEc-CCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 45566788999987653 356777777888888877799999875
No 251
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=32.08 E-value=1.3e+02 Score=30.93 Aligned_cols=48 Identities=4% Similarity=0.105 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
....+...+++.|.++......+....++...+.++.+.++|+|++.|
T Consensus 177 ~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~~~ 224 (369)
T PRK15404 177 LARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYYGG 224 (369)
T ss_pred HHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEECC
Confidence 345577889999999987666654445555666665555799988654
No 252
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=31.96 E-value=85 Score=32.21 Aligned_cols=48 Identities=27% Similarity=0.300 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCCeEEEEEeecC-CHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRD-DEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~D-d~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
..+.+.|++.| ++..+ +.++ +.+.+.+.++.+.+.++|+||-.||=|+
T Consensus 42 ~~v~~~l~~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~ 90 (339)
T cd08173 42 KKVEALLEDEG-EVDVV-IVEDATYEEVEKVESSARDIGADFVIGVGGGRV 90 (339)
T ss_pred HHHHHHHHhcC-CeEEE-EeCCCCHHHHHHHHHHhhhcCCCEEEEeCCchH
Confidence 34667788888 66555 4444 5677777777776656999998888665
No 253
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=31.85 E-value=1.7e+02 Score=29.45 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
+....+...+++.|++++.....+-...++...+.++...++|+|+..+
T Consensus 147 ~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~ 195 (334)
T cd06356 147 ISAEWVRKIVEENGGEVVGEEFIPLDVSDFGSTIQKIQAAKPDFVMSIL 195 (334)
T ss_pred HHHHHHHHHHHHcCCEEEeeeecCCCchhHHHHHHHHHhcCCCEEEEec
Confidence 3445667788999999988777777777888888877666799999754
No 254
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=31.77 E-value=1e+02 Score=29.44 Aligned_cols=48 Identities=17% Similarity=-0.085 Sum_probs=31.6
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
|+-...+..+|++.|+++..+..-.++.+.+ .+.++ ++|.||.+||-+
T Consensus 10 ~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~----~~~~~-~~dgliisGGp~ 57 (214)
T PRK07765 10 DSFVFNLVQYLGQLGVEAEVWRNDDPRLADE----AAVAA-QFDGVLLSPGPG 57 (214)
T ss_pred CcHHHHHHHHHHHcCCcEEEEECCCcCHHHH----HHhhc-CCCEEEECCCCC
Confidence 4555678889999999987664433322222 22233 499999999975
No 255
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=31.74 E-value=1.9e+02 Score=24.85 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=45.2
Q ss_pred CcceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEc-CCCHHHHHHHHHHhhhcCCCcEEEEeCCC
Q 011289 287 YTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVV-PDDVGKIKEVLRRWSDIDKMDLILTLGGT 365 (489)
Q Consensus 287 ~~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v-~Dd~~~I~~~l~~~~~~~~~DlVIttGG~ 365 (489)
...|+.++|.+|+. ..+....+.....+..+ |+++..+..- -.+.+++.+.|+++-++..+|-|+.-=
T Consensus 27 ~~~P~Laii~vg~d--------~~S~~Y~~~k~k~~~~~-Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlvq~-- 95 (117)
T PF00763_consen 27 GITPKLAIILVGDD--------PASISYVRSKQKAAEKL-GIEFELIELPEDISEEELLELIEKLNEDPSVHGILVQL-- 95 (117)
T ss_dssp T---EEEEEEES----------HHHHHHHHHHHHHHHHH-T-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEEES--
T ss_pred CCCcEEEEEecCCC--------hhHHHHHHHHHHHHHHc-CCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEEcC--
Confidence 35689999999974 22233333333333333 9988887773 345777999999987766778777632
Q ss_pred CCCCCCChHHHHHHh
Q 011289 366 GFTPRDVTPEATKEL 380 (489)
Q Consensus 366 G~t~~D~T~eav~~~ 380 (489)
|=+..+..+.+.++
T Consensus 96 -PLP~~i~~~~i~~~ 109 (117)
T PF00763_consen 96 -PLPKHIDERKILEA 109 (117)
T ss_dssp -SSSTTSHHHHHHHT
T ss_pred -CCCCCccHHHHHhc
Confidence 33445555554444
No 256
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=31.67 E-value=3.9e+02 Score=25.46 Aligned_cols=47 Identities=26% Similarity=0.258 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
-+...+++.|+++... ...++.+.-.+.++.++++++|-||..+..+
T Consensus 20 gi~~~~~~~g~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~ 66 (273)
T cd01541 20 GIESVLSEKGYSLLLA-STNNDPERERKCLENMLSQGIDGLIIEPTKS 66 (273)
T ss_pred HHHHHHHHcCCEEEEE-eCCCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 3456688889998654 4577888778888888877899999887543
No 257
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=31.66 E-value=1.5e+02 Score=29.06 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=55.3
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEE---------EcCCCHHHHHHHHHHhhhcCCCcEEE
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATD---------VVPDDVGKIKEVLRRWSDIDKMDLIL 360 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~---------~v~Dd~~~I~~~l~~~~~~~~~DlVI 360 (489)
-|++|++= +.+.-...+.++|++. |++|.... +..=+++.|.+.+++... .++|.|+
T Consensus 121 ~RIalvTP--------Y~~~v~~~~~~~l~~~-----G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~-~~aDAif 186 (239)
T TIGR02990 121 RRISLLTP--------YTPETSRPMAQYFAVR-----GFEIVNFTCLGLTDDREMARISPDCIVEAALAAFD-PDADALF 186 (239)
T ss_pred CEEEEECC--------CcHHHHHHHHHHHHhC-----CcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcC-CCCCEEE
Confidence 57777763 4444556778889998 99998874 334467889999887743 6899999
Q ss_pred EeCCCCCCCCCChHHHHHHhhcccc
Q 011289 361 TLGGTGFTPRDVTPEATKELIERET 385 (489)
Q Consensus 361 ttGG~G~t~~D~T~eav~~~~~~~l 385 (489)
.+ +|+.-.-|+..+. ++.+++++
T Consensus 187 is-CTnLrt~~vi~~l-E~~lGkPV 209 (239)
T TIGR02990 187 LS-CTALRAATCAQRI-EQAIGKPV 209 (239)
T ss_pred Ee-CCCchhHHHHHHH-HHHHCCCE
Confidence 99 6776655654443 33355554
No 258
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=31.55 E-value=1e+02 Score=32.16 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCeEEEEEeec--CCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~--Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
.-+.+.|++.|.++..+.-+. -+.+.+.+.++.+.+.++|+||-.||=|+
T Consensus 44 ~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~ 95 (380)
T cd08185 44 DRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSS 95 (380)
T ss_pred HHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 346777888898887664333 23455777777666667999998888664
No 259
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=31.44 E-value=82 Score=32.69 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCeEEEEEeec--CCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~--Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
..+...|++.|.++..+.-+. -+.+.+.+.++.+.+.++|.||-.||-|+
T Consensus 41 ~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~ 92 (370)
T cd08551 41 DKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSV 92 (370)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 356777888888876654332 35677888888876667999999998765
No 260
>CHL00101 trpG anthranilate synthase component 2
Probab=31.44 E-value=1.3e+02 Score=28.03 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=32.0
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
+|+-++.|..+|++.|+++. +++.+...+.+ +.. . +.|.||.+||-+-
T Consensus 8 ~dsft~~l~~~l~~~g~~~~---v~~~~~~~~~~-~~~--~-~~dgiiisgGpg~ 55 (190)
T CHL00101 8 YDSFTYNLVQSLGELNSDVL---VCRNDEIDLSK-IKN--L-NIRHIIISPGPGH 55 (190)
T ss_pred CCchHHHHHHHHHhcCCCEE---EEECCCCCHHH-Hhh--C-CCCEEEECCCCCC
Confidence 47888999999999998775 44433211111 211 2 4899999999863
No 261
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=31.40 E-value=93 Score=32.02 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=39.4
Q ss_pred EEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCC-HHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011289 293 AILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDD-VGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd-~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
.+|.+|..+..| -...+.+.|++. |+++....+.++- .+.+.+.++.+.+ .++|+||-.||=++-
T Consensus 25 ~livt~~~~~~~-----~~~~v~~~L~~~-----~i~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGGGS~i 90 (351)
T cd08170 25 ALIIADEFVLDL-----VGAKIEESLAAA-----GIDARFEVFGGECTRAEIERLAEIARD-NGADVVIGIGGGKTL 90 (351)
T ss_pred EEEEECHHHHHH-----HHHHHHHHHHhC-----CCeEEEEEeCCcCCHHHHHHHHHHHhh-cCCCEEEEecCchhh
Confidence 444556554431 224556677776 8876544444432 2556666666554 689999999986654
No 262
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=31.31 E-value=2.4e+02 Score=34.12 Aligned_cols=92 Identities=18% Similarity=0.260 Sum_probs=61.4
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHH---HHHHHHHhCCCeEEEEEeec--CCHHHHHHHHHHHHhcCCCEEE
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRA---MLLAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILL 81 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~---~l~a~l~~~G~~~~~~~~v~--Dd~~~i~~~l~~~~~~~~Dlvi 81 (489)
.+|+|+|+.-.+.+.. .|.. .|...|++.|+.+...-.-. +..+.+++.+..--....|+||
T Consensus 70 ~~P~VgIlfyrs~~~~-------------g~~~~vdaLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaII 136 (1098)
T PF02514_consen 70 NRPTVGILFYRSYWLS-------------GNTAVVDALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAII 136 (1098)
T ss_pred CCCEEEEEeehhhhhc-------------CCcHHHHHHHHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEE
Confidence 4899999997766652 2223 34444677899988776543 5666677777652222489999
Q ss_pred EeCCCcCCCCCc--hHHHHHhcCCeEEeeeee
Q 011289 82 TSGGVSMGDKDF--VKPLLQKKGTIYFNKVCM 111 (489)
Q Consensus 82 ttGG~s~G~~D~--~~~~l~~~G~~~f~~v~~ 111 (489)
.+-+-+.+.... ..+.|++++--+|+.+..
T Consensus 137 n~~~f~l~~~~~~~~~~~L~~LnVPVlq~i~~ 168 (1098)
T PF02514_consen 137 NLTGFSLGGGPAGGAIELLKELNVPVLQAITL 168 (1098)
T ss_pred EcCccccCCCCcchhHHHHHHCCCCEEEeecc
Confidence 877766666544 788899998555665544
No 263
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=31.20 E-value=80 Score=31.48 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=30.1
Q ss_pred HHHHHHHHccccccCCcEE----EEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeC
Q 011289 312 PRAVSVVNSSSEKLGGAKV----VATDVVPDDVGKIKEVLRRWSDIDKMDLILTLG 363 (489)
Q Consensus 312 ~~l~~~l~~~~~~~~G~~v----~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttG 363 (489)
.-+.+.|.+. |+.. ..+.-.-.|.+.+.+.++++.. .++|+|||+|
T Consensus 18 ~gf~~~L~~~-----g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~-~~~DlIi~~g 67 (294)
T PF04392_consen 18 RGFKDGLKEL-----GYDEKNVEIEYKNAEGDPEKLRQIARKLKA-QKPDLIIAIG 67 (294)
T ss_dssp HHHHHHHHHT-----T--CCCEEEEEEE-TT-HHHHHHHHHHHCC-TS-SEEEEES
T ss_pred HHHHHHHHHc-----CCccccEEEEEecCCCCHHHHHHHHHHHhc-CCCCEEEEeC
Confidence 3445566666 6654 3455667888999999987654 6999999998
No 264
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.11 E-value=1.5e+02 Score=26.40 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=43.8
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
+++++-+.+++.|. .|-.-..++..|++. |+++.+.+.--- .++|.+++.+ .++|+|..|-=.+
T Consensus 2 ~~~~vl~~~~~gD~-----H~lG~~iv~~~lr~~-----G~eVi~LG~~vp-~e~i~~~a~~----~~~d~V~lS~~~~ 65 (137)
T PRK02261 2 KKKTVVLGVIGADC-----HAVGNKILDRALTEA-----GFEVINLGVMTS-QEEFIDAAIE----TDADAILVSSLYG 65 (137)
T ss_pred CCCEEEEEeCCCCh-----hHHHHHHHHHHHHHC-----CCEEEECCCCCC-HHHHHHHHHH----cCCCEEEEcCccc
Confidence 45677666776664 344456777888888 999998875332 2455555554 3799999987555
No 265
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=31.06 E-value=2.5e+02 Score=26.52 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=41.1
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC-CeEEe
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYFN 107 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G-~~~f~ 107 (489)
.+...+++.|+.+..... ..|.+...+.++++..++.|.||...+... ..+++ +.+.+.| .+++-
T Consensus 20 ~i~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~-~~~~~~~ipvV~~ 85 (266)
T cd06282 20 GIQEEARAAGYSLLLATT-DYDAEREADAVETLLRQRVDGLILTVADAA-TSPAL-DLLDAERVPYVLA 85 (266)
T ss_pred HHHHHHHHCCCEEEEeeC-CCCHHHHHHHHHHHHhcCCCEEEEecCCCC-chHHH-HHHhhCCCCEEEE
Confidence 455667889999886543 456777777887776656999998765432 12333 3344556 54443
No 266
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=31.05 E-value=1.8e+02 Score=29.50 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhCCCeEEEEE-----eecCCH--------------HHHHHHHHHHHhcCCCEEEEeCCCcC---------
Q 011289 37 NRAMLLAAAMQQHCKLIDLG-----IVRDDE--------------EELEKTLDNAFSAGIDILLTSGGVSM--------- 88 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~-----~v~Dd~--------------~~i~~~l~~~~~~~~DlvittGG~s~--------- 88 (489)
++.+++++|++.|+....+. +..++. +...+.|.+.+....+++|++|=.+.
T Consensus 122 Sa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~a~v~~~~~~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttL 201 (295)
T cd04259 122 STRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLL 201 (295)
T ss_pred HHHHHHHHHHhCCCCeEEEcHHHheeecccccccccccccceehhhhhHHHHHHHHhcCCceeEeCCceeeCCCCCEEEE
Confidence 66778889999999888765 222221 23456677666533689999997664
Q ss_pred --CCCCchHHHHHh-cC
Q 011289 89 --GDKDFVKPLLQK-KG 102 (489)
Q Consensus 89 --G~~D~~~~~l~~-~G 102 (489)
|.-|++..++.. ++
T Consensus 202 GrggsD~tA~~lA~~l~ 218 (295)
T cd04259 202 GRGGSDTSAAYFAAKLQ 218 (295)
T ss_pred CCCChHHHHHHHHHHcC
Confidence 467999998877 45
No 267
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=30.94 E-value=1.7e+02 Score=28.30 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=56.8
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEE-eecCCHHHHHHHHH---------HHHhcCCC
Q 011289 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLG-IVRDDEEELEKTLD---------NAFSAGID 78 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~-~v~Dd~~~i~~~l~---------~~~~~~~D 78 (489)
.+++|+-||| -|..|+..+...|.+|+.-. .-++..+...+.+. ++.+ .+|
T Consensus 2 ~~~~i~GtGn------------------iG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~-~aD 62 (211)
T COG2085 2 MIIAIIGTGN------------------IGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAA-LAD 62 (211)
T ss_pred cEEEEeccCh------------------HHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHh-cCC
Confidence 4677777774 24678888889999887542 23333333333332 3454 599
Q ss_pred EEEEeCCCcCCCCCchHHHHHhcCCeEEeeeeecCCCceee
Q 011289 79 ILLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTF 119 (489)
Q Consensus 79 lvittGG~s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~~~ 119 (489)
+|+.+ -++++++++++++...+=.++-+.|-.|+-.
T Consensus 63 VVvLA-----VP~~a~~~v~~~l~~~~~~KIvID~tnp~~~ 98 (211)
T COG2085 63 VVVLA-----VPFEAIPDVLAELRDALGGKIVIDATNPIEV 98 (211)
T ss_pred EEEEe-----ccHHHHHhHHHHHHHHhCCeEEEecCCCccc
Confidence 99987 5899999999887532326677777777654
No 268
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=30.83 E-value=2.4e+02 Score=26.67 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=34.1
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
-+...+++.|+++... ...+|++...+.++.+++.++|.||+.+.
T Consensus 20 ~~~~~~~~~g~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 20 GIDDIATMYKYNIILS-NSDNDKEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred HHHHHHHHcCCeEEEE-eCCCCHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 3456688889988765 45677888888888877767999998763
No 269
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=30.77 E-value=1.2e+02 Score=33.70 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=67.1
Q ss_pred ee-CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecC-----------CHHHHHHHHHHHH
Q 011289 6 YR-TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRD-----------DEEELEKTLDNAF 73 (489)
Q Consensus 6 ~r-~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~D-----------d~~~i~~~l~~~~ 73 (489)
++ ||.|+|+.|.+|+.+-. +-.+.-...++.-+++.|+.+..+.++.+ ++|.|...++..+
T Consensus 35 ~~~kP~IgI~ns~se~~Pch-------~hl~~l~~~vk~gi~~aGg~p~ef~ti~v~Dgi~~g~sL~sRelIAdsiE~~~ 107 (571)
T PRK06131 35 FDGRPIIGICNTWSDLNPCN-------AHFRQLAERVKRGVLEAGGFPVEFPVISLGESFLRPTAMLYRNLAAMDVEEMI 107 (571)
T ss_pred hccCCEEEEecccccCcCch-------hhHHHHHHHHHHHHHHcCCEEEecCccCccccccCccccccHHHHHHHHHHHH
Confidence 35 99999999999998433 22455566777778889988877664332 3678888888876
Q ss_pred h-cCCCEEEEeCCCcCCCCCch-HHH---HHhcC--CeEEeeeeecCCC
Q 011289 74 S-AGIDILLTSGGVSMGDKDFV-KPL---LQKKG--TIYFNKVCMKPGK 115 (489)
Q Consensus 74 ~-~~~DlvittGG~s~G~~D~~-~~~---l~~~G--~~~f~~v~~kPGk 115 (489)
. ...|-+|..||- |-+ +-. ..++. .+++.+=.|.||.
T Consensus 108 ~a~~~Dg~v~i~~C-----DK~~PG~lMaa~rlniPsi~v~gGpm~~G~ 151 (571)
T PRK06131 108 RGYPIDGVVLLGGC-----DKTTPALLMGAASVDLPAIVLSGGPMLNGK 151 (571)
T ss_pred hcCCcceEEEEeeC-----CCCcHHHHHHHHhcCCCEEEEeCCCcCCCC
Confidence 5 357999988874 332 222 23344 4666777777774
No 270
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=30.76 E-value=1.3e+02 Score=31.17 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=45.9
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCC
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGT 365 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~ 365 (489)
-+++||.-.++... .....+.+.+++. |+++.....++.+..++.+.|+++.....+|+||.++-.
T Consensus 133 ~~vaii~~~~~~~~-----~~~~~l~~~l~~~-----gi~v~~~~~~~~~~~d~~~~L~~lk~~~~~~viv~~~~~ 198 (382)
T cd06371 133 AHVAIVSSPQDIWV-----ETAQKLASALRAH-----GLPVGLVTSMGPDEKGAREALKKVRSADRVRVVIMCMHS 198 (382)
T ss_pred eEEEEEEecccchH-----HHHHHHHHHHHHC-----CCcEEEEEEecCCHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 46888876555321 2345667777777 988887777776778899999987652236999987643
No 271
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=30.59 E-value=2.5e+02 Score=28.22 Aligned_cols=67 Identities=7% Similarity=0.084 Sum_probs=46.6
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCC--HHHHHHHHHHHHhcCCCEEEEeC
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDD--EEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd--~~~i~~~l~~~~~~~~DlvittG 84 (489)
.--+|++|..-++- +. .....+...+++.|.+++.....+.. ...+...|+++.+.++|+||..+
T Consensus 134 ~~~~v~ii~~~~~~---g~----------~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi~~~ 200 (350)
T cd06366 134 GWRRVATIYEDDDY---GS----------GGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHF 200 (350)
T ss_pred CCcEEEEEEEcCcc---cc----------hhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEEEEC
Confidence 33578888765431 11 23356777888999999887766654 57788888887655699999887
Q ss_pred CC
Q 011289 85 GV 86 (489)
Q Consensus 85 G~ 86 (489)
..
T Consensus 201 ~~ 202 (350)
T cd06366 201 SP 202 (350)
T ss_pred Ch
Confidence 53
No 272
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=30.53 E-value=1.9e+02 Score=25.85 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=50.7
Q ss_pred EEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCCh
Q 011289 294 ILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVT 373 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T 373 (489)
|+.+||.+..|--. .+ .. .. ++++...++-.+..+.+.+.+...+...++|+|+...|+=-......
T Consensus 3 iv~~GdS~t~~~~~-~~------~~-~~-----~~~v~n~g~~G~t~~~~~~~~~~~~~~~~pd~v~i~~G~ND~~~~~~ 69 (174)
T cd01841 3 IVFIGDSLFEGWPL-YE------AE-GK-----GKTVNNLGIAGISSRQYLEHIEPQLIQKNPSKVFLFLGTNDIGKEVS 69 (174)
T ss_pred EEEEcchhhhcCch-hh------hc-cC-----CCeEEecccccccHHHHHHHHHHHHHhcCCCEEEEEeccccCCCCCC
Confidence 67789998765432 11 11 33 78899999999999998888844443468999999988875555444
Q ss_pred HHHHHHh
Q 011289 374 PEATKEL 380 (489)
Q Consensus 374 ~eav~~~ 380 (489)
.+.+.+-
T Consensus 70 ~~~~~~~ 76 (174)
T cd01841 70 SNQFIKW 76 (174)
T ss_pred HHHHHHH
Confidence 4444443
No 273
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=30.44 E-value=1.8e+02 Score=26.33 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=39.9
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEe
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTL 362 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVItt 362 (489)
+|+.|+-+||++. -.|.-|+.+++.|.++ .++++++... ...++.+...++.. ++|.||..
T Consensus 1 ~~~lVlGiGN~L~---gDDGvG~~v~~~L~~~--~~~~v~vid~---gt~~~~~~~~i~~~----~~d~vIiV 61 (156)
T PRK11544 1 MTDVVLTVGNSMM---GDDGAGPLLAEKLAAA--PKGGWVVIDG---GSAPENDIVAIREL----RPERLLIV 61 (156)
T ss_pred CcEEEEEeCcccc---ccCcHHHHHHHHHhcc--CCCCeEEEEC---CCCHHHHHHHHHhc----CCCEEEEE
Confidence 3568899999986 4799999999999876 1224444333 33455555555532 46776654
No 274
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=30.23 E-value=99 Score=32.24 Aligned_cols=50 Identities=16% Similarity=0.021 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCeEEEEEeec--CCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~--Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
.-+.+.|++.|+++..+.-+. -+.+.+.+.++.+.+.++|.||-.||=|+
T Consensus 42 ~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSv 93 (375)
T cd08179 42 DKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSP 93 (375)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 456777888898887665432 23455777777776667999999998765
No 275
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=30.16 E-value=1.3e+02 Score=30.11 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
..+.+.+++.|++++.....+-+.......+.++.+.++|+|+.++-.
T Consensus 150 ~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~ 197 (333)
T cd06358 150 AAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASGADAVLSTLVG 197 (333)
T ss_pred HHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 466677888888887766666666667777777666568888876543
No 276
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=30.07 E-value=1.7e+02 Score=29.90 Aligned_cols=49 Identities=29% Similarity=0.481 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCCEEEEeCCCc---------------CCCCCchHHHHHh-cC-C-eEE----eeeeecCCCc
Q 011289 67 KTLDNAFSAGIDILLTSGGVS---------------MGDKDFVKPLLQK-KG-T-IYF----NKVCMKPGKP 116 (489)
Q Consensus 67 ~~l~~~~~~~~DlvittGG~s---------------~G~~D~~~~~l~~-~G-~-~~f----~~v~~kPGkp 116 (489)
++|+..++.+ -+||.+||.+ +++.|.+...+.. ++ + ++| .||...|++|
T Consensus 173 ~~I~~LL~~G-~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~~~~p 243 (310)
T TIGR00746 173 ETIKTLVENG-VIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYINYGKP 243 (310)
T ss_pred HHHHHHHHCC-CEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCCCCCC
Confidence 4677777754 5888888866 3477888777765 55 4 333 5666655443
No 277
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=29.74 E-value=2.3e+02 Score=28.16 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=45.5
Q ss_pred eEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Q 011289 10 TIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMG 89 (489)
Q Consensus 10 rV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G 89 (489)
||+|+.=|. .....|-=.++..+...|++.|+++..+.+-.| +...+.+ +. +.|+|+..-.-..|
T Consensus 2 ~v~v~~gg~---------s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~----~~~~~~~-~~-~~D~v~~~~~g~~g 66 (299)
T PRK14571 2 RVALLMGGV---------SREREISLRSGERVKKALEKLGYEVTVFDVDED----FLKKVDQ-LK-SFDVVFNVLHGTFG 66 (299)
T ss_pred eEEEEeCCC---------CCCccchHHHHHHHHHHHHHcCCeEEEEccCch----HHHHhhh-cc-CCCEEEEeCCCCCC
Confidence 688888772 112333335677788889999999887754322 2223322 22 48999876543355
Q ss_pred CCCchHHHHHhc
Q 011289 90 DKDFVKPLLQKK 101 (489)
Q Consensus 90 ~~D~~~~~l~~~ 101 (489)
....+...++.+
T Consensus 67 e~~~~~~~le~~ 78 (299)
T PRK14571 67 EDGTLQAILDFL 78 (299)
T ss_pred CccHHHHHHHHc
Confidence 555555555543
No 278
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=29.74 E-value=1.3e+02 Score=28.66 Aligned_cols=66 Identities=18% Similarity=0.142 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC-CeEEe
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYFN 107 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G-~~~f~ 107 (489)
-+...+++.|+++.... ...|++...+.++.++.++.|-||...+......+.+.+ +.+.| .+++-
T Consensus 20 gi~~~~~~~g~~~~~~~-~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~-~~~~~ipvV~~ 86 (273)
T cd06305 20 GTKAEAEALGGDLRVYD-AGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKR-ALDAGIPVVAF 86 (273)
T ss_pred HHHHHHHHcCCEEEEEC-CCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHH-HHHcCCCEEEe
Confidence 34556889999987654 356788888888888776799999976543222333333 33445 44443
No 279
>PRK13566 anthranilate synthase; Provisional
Probab=29.70 E-value=2.7e+02 Score=32.05 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=48.9
Q ss_pred CCCcceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC
Q 011289 285 SGYTEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 364 (489)
Q Consensus 285 ~~~~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG 364 (489)
.+-..++|.||--+ |.+...++++|++. |+++..+..--++ +.+ .. .++|.||.+||
T Consensus 522 ~~~~g~~IlvID~~---------dsf~~~l~~~Lr~~-----G~~v~vv~~~~~~-~~~----~~----~~~DgVVLsgG 578 (720)
T PRK13566 522 AVGEGKRVLLVDHE---------DSFVHTLANYFRQT-----GAEVTTVRYGFAE-EML----DR----VNPDLVVLSPG 578 (720)
T ss_pred CCCCCCEEEEEECC---------CchHHHHHHHHHHC-----CCEEEEEECCCCh-hHh----hh----cCCCEEEECCC
Confidence 34455677777644 44567899999999 9887655543322 222 21 26999999999
Q ss_pred CCCCCCCChHHHHHHhhccccc
Q 011289 365 TGFTPRDVTPEATKELIERETP 386 (489)
Q Consensus 365 ~G~t~~D~T~eav~~~~~~~l~ 386 (489)
-|.-.|.-..+.+..+.+..+|
T Consensus 579 pgsp~d~~~~~lI~~a~~~~iP 600 (720)
T PRK13566 579 PGRPSDFDCKATIDAALARNLP 600 (720)
T ss_pred CCChhhCCcHHHHHHHHHCCCc
Confidence 8763332345566666554444
No 280
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=29.68 E-value=1e+02 Score=28.40 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHHH------HHHHHHHhcCCCEEEEeCCCcCCCCCch-HHHHHhcC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELE------KTLDNAFSAGIDILLTSGGVSMGDKDFV-KPLLQKKG 102 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~------~~l~~~~~~~~DlvittGG~s~G~~D~~-~~~l~~~G 102 (489)
.-|..++..++.+|+++..+..-++..+... ..+.+++.+ +|+|+..=-.....+.++ .+.++.+.
T Consensus 46 ~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~-aDiv~~~~plt~~T~~li~~~~l~~mk 118 (178)
T PF02826_consen 46 RIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQ-ADIVSLHLPLTPETRGLINAEFLAKMK 118 (178)
T ss_dssp HHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH--SEEEE-SSSSTTTTTSBSHHHHHTST
T ss_pred CCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcch-hhhhhhhhccccccceeeeeeeeeccc
Confidence 4678999999999999999887766544121 357777774 999998776544444443 44455553
No 281
>PRK06291 aspartate kinase; Provisional
Probab=29.59 E-value=1.8e+02 Score=31.33 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHhCCCeEEEEE-----eecCC-----------HHHHHHHHHHHHhcCCCEEEEeCC-----------CcC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLG-----IVRDD-----------EEELEKTLDNAFSAGIDILLTSGG-----------VSM 88 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~-----~v~Dd-----------~~~i~~~l~~~~~~~~DlvittGG-----------~s~ 88 (489)
-++.++.+.|++.|++...+. ++.|+ ...+.+.++..++. ..+.|++|- .|-
T Consensus 132 ~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~vpVv~Gfig~~~~g~~~tlgr 210 (465)
T PRK06291 132 LSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERLEPLLKE-GVIPVVTGFIGETEEGIITTLGR 210 (465)
T ss_pred HHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhHHHHHHHHHHHhhc-CcEEEEeCcEEcCCCCCEEEecC
Confidence 467888999999999887764 33332 24455667777763 578888873 234
Q ss_pred CCCCchHHHHHh-cC
Q 011289 89 GDKDFVKPLLQK-KG 102 (489)
Q Consensus 89 G~~D~~~~~l~~-~G 102 (489)
|.-|++..++.. ++
T Consensus 211 ggsD~~A~~~A~~l~ 225 (465)
T PRK06291 211 GGSDYSAAIIGAALD 225 (465)
T ss_pred CChHHHHHHHHHhcC
Confidence 456888888876 45
No 282
>PRK09054 phosphogluconate dehydratase; Validated
Probab=29.57 E-value=1.2e+02 Score=33.73 Aligned_cols=101 Identities=21% Similarity=0.203 Sum_probs=70.3
Q ss_pred eeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeec-----------------CCHHHH
Q 011289 3 VKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVR-----------------DDEEEL 65 (489)
Q Consensus 3 V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~-----------------Dd~~~i 65 (489)
+.-.+||.|+|+++.+|+.+.. +-++.-...+++.+++.|..+...+-++ =++|.|
T Consensus 60 ~~~~~kP~IgIvns~nd~~p~h-------~~l~~~~~~vk~~v~~aGg~~~~~Gg~pa~cDGit~G~~GM~~SL~SRdlI 132 (603)
T PRK09054 60 LKAMTRPNIGIVTAYNDMLSAH-------QPYEHYPDIIKEAAREAGAVAQVAGGVPAMCDGVTQGQPGMELSLFSRDVI 132 (603)
T ss_pred HHhcCCCEEEEEeccccCcCcc-------ccHHHHHHHHHHHHHHcCCccceeCCCCccCCCccCCCcchhhhhhhHHHH
Confidence 4456899999999999998544 4467778889999999988877773221 136778
Q ss_pred HHHHHHHHh-cCCCEEEEeCCCcCCCCCc-hHHHH---HhcC---CeEEeeeeecCCC
Q 011289 66 EKTLDNAFS-AGIDILLTSGGVSMGDKDF-VKPLL---QKKG---TIYFNKVCMKPGK 115 (489)
Q Consensus 66 ~~~l~~~~~-~~~DlvittGG~s~G~~D~-~~~~l---~~~G---~~~f~~v~~kPGk 115 (489)
...++..+. ...|-+|..||- |- ++-.| .++| .+++.+=.|.||.
T Consensus 133 A~sie~~l~~~~fDg~v~lg~C-----DKivPG~lMaA~r~g~lP~ifV~gGpM~~G~ 185 (603)
T PRK09054 133 AMSTAVALSHNMFDAALLLGVC-----DKIVPGLLIGALSFGHLPAIFVPAGPMTSGL 185 (603)
T ss_pred HHHHHHHhhcCCcceEEEeccC-----CCCcHHHHHHHHhcCCCCEEEEeCCCcCCCC
Confidence 888877765 357999998874 43 33322 3354 4566666777774
No 283
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.47 E-value=67 Score=28.71 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=43.7
Q ss_pred EEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCC
Q 011289 293 AILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF 367 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~ 367 (489)
+|+.+||.+..|... . + . +++..+...++-.+..+.+.+.+++.+ ..+.|+|+...|+=-
T Consensus 1 ~v~~~GdSi~~~~~~-----~--~--~-----~~~~~v~n~g~~G~~~~~~~~~l~~~~-~~~pd~vvl~~G~ND 60 (169)
T cd01828 1 ALVFLGDSLTEGGPW-----A--L--L-----FPDVKVANRGISGDTTRGLLARLDEDV-ALQPKAIFIMIGIND 60 (169)
T ss_pred CEEEecchhhccCcH-----H--H--h-----cCCCceEecCcccccHHHHHHHHHHHh-ccCCCEEEEEeeccC
Confidence 378889999887531 1 1 1 126778888888888888888888776 358999999988653
No 284
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=29.31 E-value=2.1e+02 Score=28.68 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=63.2
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
++.||+|+.=|. .....|-=.++..+...|++.|+++..+.. |..+ +...+.+ .+.|+++..=.-
T Consensus 2 ~~~~i~vl~gg~---------s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~--~~~~-~~~~l~~---~~~d~vf~~lhG 66 (296)
T PRK14569 2 KNEKIVVLYGGD---------SPEREVSLKSGKAVLDSLISQGYDAVGVDA--SGKE-LVAKLLE---LKPDKCFVALHG 66 (296)
T ss_pred CCcEEEEEeCCC---------CCchHhHHHHHHHHHHHHHHcCCEEEEEcC--Cchh-HHHHhhc---cCCCEEEEeCCC
Confidence 367999999873 122334345677888889999999876643 2222 2223332 247877753321
Q ss_pred cCCCCCchHHHHHhcCCeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHHHHhcCCC
Q 011289 87 SMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAIRHLSGWA 166 (489)
Q Consensus 87 s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~~l~G~~ 166 (489)
..|..-.+...++.+| .+++| =+|.++..+++-...-.+-+-.|.+
T Consensus 67 ~~ge~~~i~~~le~~g--------------------------------ip~~G--s~~~a~~l~~DK~~~k~~l~~~gIp 112 (296)
T PRK14569 67 EDGENGRVSALLEMLE--------------------------------IKHTS--SSMKSSVITMDKMISKEILMHHRMP 112 (296)
T ss_pred CCCCChHHHHHHHHcC--------------------------------CCeeC--CCHHHHHHHHCHHHHHHHHHHCCCC
Confidence 2233333444444442 11212 1346777788777766666666776
Q ss_pred CC
Q 011289 167 NP 168 (489)
Q Consensus 167 ~~ 168 (489)
.+
T Consensus 113 tp 114 (296)
T PRK14569 113 TP 114 (296)
T ss_pred CC
Confidence 54
No 285
>PRK09330 cell division protein FtsZ; Validated
Probab=29.27 E-value=65 Score=33.97 Aligned_cols=38 Identities=21% Similarity=0.459 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCCEEEEeC----CCcCCCCCchHHHHHhcC
Q 011289 64 ELEKTLDNAFSAGIDILLTSG----GVSMGDKDFVKPLLQKKG 102 (489)
Q Consensus 64 ~i~~~l~~~~~~~~DlvittG----G~s~G~~D~~~~~l~~~G 102 (489)
+..+.++++++ +||+|+++. |||.|-.-++.++.+++|
T Consensus 86 e~~e~I~~~l~-~~D~vfI~AGmGGGTGTGaapvIA~iake~g 127 (384)
T PRK09330 86 ESREEIREALE-GADMVFITAGMGGGTGTGAAPVVAEIAKELG 127 (384)
T ss_pred HHHHHHHHHHc-CCCEEEEEecCCCcccHHHHHHHHHHHHHcC
Confidence 34455667776 699999884 454554456666666665
No 286
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=29.14 E-value=1e+02 Score=31.65 Aligned_cols=58 Identities=24% Similarity=0.241 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCeEEEEEeecC--CHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHH
Q 011289 38 RAMLLAAAMQQHCKLIDLGIVRD--DEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPL 97 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~D--d~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~ 97 (489)
...+...|++.|.++..+..+.. +.+.+.+.++.+.+.++|+||-.||=|+ -|..+-+
T Consensus 38 ~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~--~D~aK~i 97 (345)
T cd08171 38 KDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKA--IDTVKVL 97 (345)
T ss_pred HHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHH--HHHHHHH
Confidence 34567778888888776655433 3555667766666557999998888665 4544443
No 287
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=29.08 E-value=1.2e+02 Score=30.80 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=42.7
Q ss_pred EcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 34 RDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
-+..-..+...|++.|.+......-.. ....+.++++...++|.||..||=|. +.+++..+
T Consensus 18 ~~~~~~~~~~~l~~~g~~~~~~~t~~~--g~a~~~a~~a~~~~~D~via~GGDGT-----v~evingl 78 (301)
T COG1597 18 AKKLLREVEELLEEAGHELSVRVTEEA--GDAIEIAREAAVEGYDTVIAAGGDGT-----VNEVANGL 78 (301)
T ss_pred hhhHHHHHHHHHHhcCCeEEEEEeecC--ccHHHHHHHHHhcCCCEEEEecCcch-----HHHHHHHH
Confidence 345556778889999999887766655 33334444544446999999999775 67777665
No 288
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=29.05 E-value=8.1e+02 Score=26.96 Aligned_cols=124 Identities=10% Similarity=0.144 Sum_probs=70.6
Q ss_pred EEcChHHHHHHHHHhCCCeEEEEEee--------------cCCHHHHHHHHHHHHhcCCCEEEEeC---CCcCCCCCchH
Q 011289 33 IRDSNRAMLLAAAMQQHCKLIDLGIV--------------RDDEEELEKTLDNAFSAGIDILLTSG---GVSMGDKDFVK 95 (489)
Q Consensus 33 i~dsn~~~l~a~l~~~G~~~~~~~~v--------------~Dd~~~i~~~l~~~~~~~~DlvittG---G~s~G~~D~~~ 95 (489)
+.|.+..- .+.++++|++......- .|..+...+.+.+... ++|+||+|- |.- -++=.+.
T Consensus 192 v~d~~~~r-le~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~-~~DIVI~TalipG~~-aP~Lit~ 268 (511)
T TIGR00561 192 AFDTRPEV-KEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAK-EVDIIITTALIPGKP-APKLITE 268 (511)
T ss_pred EEeCCHHH-HHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhC-CCCEEEECcccCCCC-CCeeehH
Confidence 45777664 44566788877544421 1222334444555555 599999988 521 1122677
Q ss_pred HHHHhcC-CeEEeeeeecCCCceeeEEEccCCCCcc-ccccEEEEEcCCChHH----HHHHHHHHHHHHHHHhc
Q 011289 96 PLLQKKG-TIYFNKVCMKPGKPLTFAEINIKPTDDV-MVNKILAFGLPGNPVS----CIVCFHLYIVPAIRHLS 163 (489)
Q Consensus 96 ~~l~~~G-~~~f~~v~~kPGkp~~~a~~~~~~~~~~-~~~~~~v~~LPGnP~a----a~~~~~~~v~P~L~~l~ 163 (489)
+.++.+- .-.+=.++..+|.-.-+.+-+. .+ ..++..+++.|.-|.. +...|..-+.|+|..+.
T Consensus 269 emv~~MKpGsvIVDlA~d~GGn~E~t~p~~----~~~~~~GV~~~gv~nlPs~~p~~AS~l~s~nl~~~l~~l~ 338 (511)
T TIGR00561 269 EMVDSMKAGSVIVDLAAEQGGNCEYTKPGE----VYTTENQVKVIGYTDLPSRLPTQSSQLYGTNLVNLLKLLC 338 (511)
T ss_pred HHHhhCCCCCEEEEeeeCCCCCEEEecCce----EEEecCCEEEEeeCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 7777764 3445667778877544442110 00 0124778887777654 33456666788887775
No 289
>PF02610 Arabinose_Isome: L-arabinose isomerase; InterPro: IPR003762 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source [].; GO: 0008733 L-arabinose isomerase activity, 0008152 metabolic process; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=29.03 E-value=63 Score=33.62 Aligned_cols=73 Identities=21% Similarity=0.208 Sum_probs=46.5
Q ss_pred CcceEEEEEEeCCcccCCC---ccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEe
Q 011289 287 YTEFSVAILTVSDTVASGA---GPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTL 362 (489)
Q Consensus 287 ~~~~~v~Ii~~GdEi~~G~---~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVItt 362 (489)
.+.+.+..++.+..++-.+ .+..++..+++.|++. ..+ -++++...++ +++++|.+.++++-.+.+||.|||-
T Consensus 4 ~~~~~~wf~~gsQ~LYg~e~L~~v~~~s~~i~~~l~~~-~~~-p~~vv~k~~~-~t~~~i~~~~~~an~~~~c~gvi~w 79 (359)
T PF02610_consen 4 FKKYEFWFVTGSQHLYGEETLKQVAEHSREIVDGLNAS-GSL-PVKVVFKPVV-TTPEEITRVCKEANADEDCDGVITW 79 (359)
T ss_dssp GGG-EEEEEEB--STS-HHHHHHHHHHHHHHHHHHHHH-S---SSEEEE---B--SHHHHHHHHHHHHH-TTEEEEEEE
T ss_pred CCCCeEEEEecCccccCHHHHHHHHHHHHHHHHHHhhc-CCC-ceEEEecCcc-CCHHHHHHHHHHhhccCCccEEeeh
Confidence 4678888888877776332 3467888999999886 111 2677666555 5669999999888655689999974
No 290
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=28.98 E-value=1.2e+02 Score=29.70 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=35.7
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
+.+||++|.|.... +.. +.-.....+.+++. |+++..+... + ++. +.+. ++|+|+.+||-.
T Consensus 30 ~~~~v~fIPtAs~~--~~~-~~y~~~~~~af~~l-----G~~v~~l~~~-~---d~~----~~l~--~ad~I~v~GGnt 90 (233)
T PRK05282 30 GRRKAVFIPYAGVT--QSW-DDYTAKVAEALAPL-----GIEVTGIHRV-A---DPV----AAIE--NAEAIFVGGGNT 90 (233)
T ss_pred CCCeEEEECCCCCC--CCH-HHHHHHHHHHHHHC-----CCEEEEeccc-h---hhH----HHHh--cCCEEEECCccH
Confidence 56899999874422 111 11112345566666 9987766433 2 222 3344 789999999843
No 291
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=28.98 E-value=1e+02 Score=27.80 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCeEEEEEeecCCHHHHHH-------HHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHh
Q 011289 38 RAMLLAAAMQQHCKLIDLGIVRDDEEELEK-------TLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQK 100 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~-------~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~ 100 (489)
+.-++..|.+.|+++..+.+-++..+.+.+ .+.+++++ +|+|++.= .+.+-+.+++..
T Consensus 13 G~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~-~dvvi~~v----~~~~~v~~v~~~ 77 (163)
T PF03446_consen 13 GSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQ-ADVVILCV----PDDDAVEAVLFG 77 (163)
T ss_dssp HHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHH-BSEEEE-S----SSHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhc-ccceEeec----ccchhhhhhhhh
Confidence 455555666778888877755544444443 24566663 89988763 344456666554
No 292
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=28.90 E-value=1.8e+02 Score=27.26 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhCCCeEEEEEe---e--c--------CCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHH
Q 011289 37 NRAMLLAAAMQQHCKLIDLGI---V--R--------DDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKP 96 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~---v--~--------Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~ 96 (489)
-|..|+..+...|++|+.+.- + | .+.+++.+++.+.+.+ +|++|.+.-+| ||.++
T Consensus 31 ~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~~~-~Di~I~aAAVs----Df~p~ 98 (185)
T PF04127_consen 31 MGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELLPS-ADIIIMAAAVS----DFRPE 98 (185)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHGGG-GSEEEE-SB------SEEES
T ss_pred HHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhccccCc-ceeEEEecchh----heeeh
Confidence 578899999999999987641 1 2 6778899999998874 89999999875 77665
No 293
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=28.88 E-value=1.9e+02 Score=30.20 Aligned_cols=49 Identities=6% Similarity=0.114 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCeEEEEEeecC---CHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 38 RAMLLAAAMQQHCKLIDLGIVRD---DEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~D---d~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
...+...+++.|.++.....++. ...++.+.|+++...++|+||..+..
T Consensus 193 ~~~~~~~l~~~gi~i~~~~~~~~~~~~~~d~~~~l~~i~~~~~dvIil~~~~ 244 (410)
T cd06363 193 LQLFSELIANTGICIAYQGLIPLDTDPETDYQQILKQINQTKVNVIVVFASR 244 (410)
T ss_pred HHHHHHHHHHCCeEEEEEEEecCCCchHHHHHHHHHHHhcCCCeEEEEEcCh
Confidence 35566788889998887666654 35678888888776568999987644
No 294
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=28.86 E-value=2.3e+02 Score=28.44 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=45.6
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCC--HHHHHHHHHHhhhcCCCcEEEEeCC
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDD--VGKIKEVLRRWSDIDKMDLILTLGG 364 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd--~~~I~~~l~~~~~~~~~DlVIttGG 364 (489)
-++++|...+.- |+ .....+.+.+++. |+++.....++.. ...+...|+++.. .+.|+||..+.
T Consensus 136 ~~v~ii~~~~~~--g~---~~~~~~~~~~~~~-----g~~v~~~~~~~~~~~~~d~~~~l~~i~~-~~~dvvi~~~~ 201 (350)
T cd06366 136 RRVATIYEDDDY--GS---GGLPDLVDALQEA-----GIEISYRAAFPPSANDDDITDALKKLKE-KDSRVIVVHFS 201 (350)
T ss_pred cEEEEEEEcCcc--cc---hhHHHHHHHHHHc-----CCEEEEEeccCCCCChhHHHHHHHHHhc-CCCeEEEEECC
Confidence 378888765542 22 1235666777777 9999888877775 5788888888764 47999998774
No 295
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=28.67 E-value=1.5e+02 Score=31.02 Aligned_cols=49 Identities=8% Similarity=0.114 Sum_probs=36.5
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
++| -+++.++++.|+++..-..+|=+..++.+.+++..+.+.|+|+.|-
T Consensus 149 e~N-ri~r~~l~~~GgevvgE~Y~plg~td~~~ii~~I~~~~Pd~V~stl 197 (363)
T PF13433_consen 149 ESN-RIIRDLLEARGGEVVGERYLPLGATDFDPIIAEIKAAKPDFVFSTL 197 (363)
T ss_dssp HHH-HHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHHHHHHHT-SEEEEE-
T ss_pred HHH-HHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHhhCCCEEEEeC
Confidence 344 5678889999999999999998888888888887765699999664
No 296
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=28.65 E-value=2.4e+02 Score=28.96 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHH------HHHHHhcCCCEEEEeCCCcCCCCCchHH-HHHhcC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKT------LDNAFSAGIDILLTSGGVSMGDKDFVKP-LLQKKG 102 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~------l~~~~~~~~DlvittGG~s~G~~D~~~~-~l~~~G 102 (489)
.-|..++..++.+|+++..+..-+. ++.-++. +.+++.+ +|+|+..-......+.++-+ .|+.|.
T Consensus 156 rIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~l~ell~~-sDii~l~~Plt~~T~hLin~~~l~~mk 227 (324)
T COG1052 156 RIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVDLDELLAE-SDIISLHCPLTPETRHLINAEELAKMK 227 (324)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceeccHHHHHHh-CCEEEEeCCCChHHhhhcCHHHHHhCC
Confidence 3578899999999999999988775 3333332 7777774 99999998877766666543 345453
No 297
>PRK14556 pyrH uridylate kinase; Provisional
Probab=28.65 E-value=1.1e+02 Score=30.34 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCC----HHHHHHHHHHHHhcCCCEEEEeCCCcCC--CCCchHHHHHh-cC
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDD----EEELEKTLDNAFSAGIDILLTSGGVSMG--DKDFVKPLLQK-KG 102 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd----~~~i~~~l~~~~~~~~DlvittGG~s~G--~~D~~~~~l~~-~G 102 (489)
|+.+|.+.|++.|.....+.-++.+ +. ..+.+.+.+++ ..++|..||+|.+ .-|.+...+.. ++
T Consensus 94 Nal~l~~~l~~~~~~~~v~sa~~~~~~~e~~-~~~~~~~~l~~-g~vvi~~gg~G~p~~StD~lAallA~~l~ 164 (249)
T PRK14556 94 NALALRDMLISEGVDAEVFSAKGVDGLLKVA-SAHEFNQELAK-GRVLIFAGGTGNPFVTTDTTASLRAVEIG 164 (249)
T ss_pred HHHHHHHHHHHcCCCeEEeeccccCcCCCCC-CHHHHHHHHhC-CCEEEEECCCCCCcCCcHHHHHHHHHHcC
Confidence 8889999999999887655543322 12 23333344543 6899989997543 35666666554 45
No 298
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=28.63 E-value=73 Score=33.22 Aligned_cols=50 Identities=26% Similarity=0.234 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCeEEEEEeecC--CHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRD--DEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~D--d~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
--+...|++.|.++..+.-+.. +.+.+.+.++.+.+.++|.||-.||=|+
T Consensus 44 ~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~ 95 (376)
T cd08193 44 DPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSS 95 (376)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 3467788888988766654432 3566777777776667999999998775
No 299
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=28.54 E-value=1.5e+02 Score=30.05 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=39.7
Q ss_pred hHHHHHHHHHhCCCeEEEEEe----ecCC--------HHHHHHHHHHHHh--cCCCEEEEeCCCcCC-----------CC
Q 011289 37 NRAMLLAAAMQQHCKLIDLGI----VRDD--------EEELEKTLDNAFS--AGIDILLTSGGVSMG-----------DK 91 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~----v~Dd--------~~~i~~~l~~~~~--~~~DlvittGG~s~G-----------~~ 91 (489)
++.+++++|++.|.....+.. +-|+ .+.+.+.+.+.+. ...+++|++|..|.. .-
T Consensus 124 Sa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLGrggs 203 (292)
T cd04258 124 SSLLFSEALREQGVPAEWFDVRTVLRTDSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGS 203 (292)
T ss_pred HHHHHHHHHHhCCCCeEEEchHHeEEecCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCccccCCCCCEEecCCCch
Confidence 778899999999998877642 2221 1223333333221 136899999997653 33
Q ss_pred CchHHHHHh
Q 011289 92 DFVKPLLQK 100 (489)
Q Consensus 92 D~~~~~l~~ 100 (489)
|++...+..
T Consensus 204 D~~a~~~a~ 212 (292)
T cd04258 204 DYSAALLAE 212 (292)
T ss_pred HHHHHHHHH
Confidence 777777765
No 300
>PLN03139 formate dehydrogenase; Provisional
Probab=28.45 E-value=2.2e+02 Score=30.09 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG 102 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G 102 (489)
+|.+=|+.+|++.|++++...--..+. +.+.+.+. ++|++|++.. ....++++.+++..
T Consensus 62 ~~~~~~~~~l~~~g~~~v~~~~~~~~~----~~~~~~l~-dadili~~~~---~~~~~~~e~l~~ap 120 (386)
T PLN03139 62 ENALGIRDWLESQGHQYIVTDDKEGPD----CELEKHIP-DLHVLITTPF---HPAYVTAERIKKAK 120 (386)
T ss_pred ccCccHHHHHHhcCCeEEEeCCCCCCH----HHHHHHhC-CCeEEEEcCc---cCCCCCHHHHhhCC
Confidence 778889999999999887653211122 33344444 5999987432 23457788888764
No 301
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=28.26 E-value=74 Score=32.87 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCeEEEEEeec-CCHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Q 011289 38 RAMLLAAAMQQHCKLIDLGIVR-DDEEELEKTLDNAFSAGIDILLTSGGVSMG 89 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~-Dd~~~i~~~l~~~~~~~~DlvittGG~s~G 89 (489)
...+...|++.| ++..+ +.+ -+.+.+.+.++.+.+.++|+||..||=+++
T Consensus 50 ~~~l~~~l~~~~-~~~~~-~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~ 100 (350)
T PRK00843 50 GDRVEENLEDAG-DVEVV-IVDEATMEEVEKVEEKAKDVNAGFLIGVGGGKVI 100 (350)
T ss_pred HHHHHHHHHhcC-CeeEE-eCCCCCHHHHHHHHHHhhccCCCEEEEeCCchHH
Confidence 345666777777 65544 333 345557777776665568999988886653
No 302
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.23 E-value=2.8e+02 Score=26.17 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
-+...+++.|+++... ...+|++...+.++++.++++|.||+.+.
T Consensus 20 g~~~~a~~~g~~~~~~-~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 20 GLEEVLEEAGYTVFLA-NSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred HHHHHHHHcCCeEEEe-cCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4456688889987543 44567888888888888767999999864
No 303
>PRK05665 amidotransferase; Provisional
Probab=28.14 E-value=1.4e+02 Score=29.21 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=36.5
Q ss_pred ceEEEEEEeCCcccC-CCccCCchHHHHHHHHccccccCCc--EEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC-
Q 011289 289 EFSVAILTVSDTVAS-GAGPDRSGPRAVSVVNSSSEKLGGA--KVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG- 364 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~-G~~~D~n~~~l~~~l~~~~~~~~G~--~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG- 364 (489)
.+|++||.+|+-.-. -.....-+.++.++|... +. ++..+.+..++.. . ..+ ++|.||.|||
T Consensus 2 ~mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~-----~~~~~~~~~~~~~~~~p---~----~~~--~~dgiiitGs~ 67 (240)
T PRK05665 2 SLRICILETDVLRPELVAQYQGYGRMFEQLFARQ-----PIAAEFVVYNVVQGDYP---A----DDE--KFDAYLVTGSK 67 (240)
T ss_pred ceEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhC-----CCCceEEEEeccCCCCC---C----Ccc--cCCEEEECCCC
Confidence 357999998855310 011233356777777776 53 3444433333311 0 122 7999999999
Q ss_pred CCCC
Q 011289 365 TGFT 368 (489)
Q Consensus 365 ~G~t 368 (489)
.++.
T Consensus 68 ~~v~ 71 (240)
T PRK05665 68 ADSF 71 (240)
T ss_pred CCcc
Confidence 4444
No 304
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=28.10 E-value=91 Score=32.38 Aligned_cols=50 Identities=24% Similarity=0.160 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCeEEEEEeecC--CHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRD--DEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~D--d~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
.-+...|++.|.++..+.-+.. +.+.+.+.++.+.+.++|+||-.||=|+
T Consensus 42 ~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSv 93 (370)
T cd08192 42 ARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSA 93 (370)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 4577788888988776643432 3456777777776667999998888665
No 305
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=28.07 E-value=1.3e+02 Score=32.43 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=47.4
Q ss_pred CCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHH
Q 011289 304 GAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPE 375 (489)
Q Consensus 304 G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~e 375 (489)
|-..|-......+.-... |.+|..+..-.+...++++..+ .+.|+|+.+||+=-|..++..+
T Consensus 79 Glv~~~TaeAAk~AAlgA-----GA~V~~~~a~~l~~~~l~~I~~-----~~PDIILLaGGtDGG~~e~~l~ 140 (463)
T TIGR01319 79 GLVPEITAEAAKRAAHGA-----GAKIANVYAYDLNNKDIEAIEE-----SNLDIILFAGGTDGGEEECGIH 140 (463)
T ss_pred eccchhhHHHHHHHHhcC-----CcEEEEEEeecCCHHHHHHHhh-----cCCCEEEEeCCcCCCchHHHHH
Confidence 445566666666666667 9999998888888777766655 2799999999999888887544
No 306
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=28.00 E-value=3e+02 Score=27.25 Aligned_cols=88 Identities=19% Similarity=0.188 Sum_probs=54.8
Q ss_pred CcceEEEEEEe-CCcccCCCccC-CchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC
Q 011289 287 YTEFSVAILTV-SDTVASGAGPD-RSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 364 (489)
Q Consensus 287 ~~~~~v~Ii~~-GdEi~~G~~~D-~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG 364 (489)
-.+|-++|++- ||- ..|+..+ ++..++|+-+-+..+. +|++| +..+-|.+|+|-...-++ .+-||.|||
T Consensus 50 nykPvIGIL~hpg~g-~~~rl~n~t~~~yIAASYVK~aEs-gGARV--iPli~nepEe~lfqklel-----vNGviftGG 120 (340)
T KOG1559|consen 50 NYKPVIGILSHPGDG-ASGRLKNATGRSYIAASYVKLAES-GGARV--IPLIYNEPEEILFQKLEL-----VNGVIFTGG 120 (340)
T ss_pred ccCceeEEeccCCCC-ccceeccccCcchhHHHHHHHHHc-CCceE--EEEecCCcHHHHHHHHHH-----hceeEecCc
Confidence 46788999976 555 4555544 7777887643333222 28766 456778888876665554 567889998
Q ss_pred CCCCCCCChHHHHHHhhcccc
Q 011289 365 TGFTPRDVTPEATKELIERET 385 (489)
Q Consensus 365 ~G~t~~D~T~eav~~~~~~~l 385 (489)
--.. .| -.+++.+++++.+
T Consensus 121 wak~-~d-Y~~vvkkifnk~l 139 (340)
T KOG1559|consen 121 WAKR-GD-YFEVVKKIFNKVL 139 (340)
T ss_pred cccc-cc-HHHHHHHHHHHHH
Confidence 3322 23 3566666666543
No 307
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=27.99 E-value=1.3e+02 Score=27.96 Aligned_cols=16 Identities=25% Similarity=0.663 Sum_probs=11.6
Q ss_pred HHhcCCCEEEEeCCCcC
Q 011289 72 AFSAGIDILLTSGGVSM 88 (489)
Q Consensus 72 ~~~~~~DlvittGG~s~ 88 (489)
++. ++|+||+++..+.
T Consensus 94 ~~~-~~diVi~at~~g~ 109 (194)
T cd01078 94 AIK-GADVVFAAGAAGV 109 (194)
T ss_pred HHh-cCCEEEECCCCCc
Confidence 344 5999999887655
No 308
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=27.95 E-value=2.1e+02 Score=26.40 Aligned_cols=90 Identities=20% Similarity=0.235 Sum_probs=62.5
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCe-EEEEEeecCC--HHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCK-LIDLGIVRDD--EEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~-~~~~~~v~Dd--~~~i~~~l~~~~~~~~DlvittGG 85 (489)
..+.|+..|+.-. .| |+-+|++..+|++.+.. ...+|.+.+= .--|++.+++..+...+=.|+.==
T Consensus 25 ~~iv~lCIGTDRs--------tG---DsLGPLVGt~L~~~~~~~~~VyGTL~~PVHA~NL~e~l~~I~~~~~~~~IIAID 93 (163)
T PF06866_consen 25 REIVFLCIGTDRS--------TG---DSLGPLVGTKLKEMGFPNFNVYGTLDEPVHALNLEETLNEIKKKHPNPFIIAID 93 (163)
T ss_pred CCEEEEEECCCCC--------cc---ccccchhhHHHHhcCCCCceEEECCCCCcchhhHHHHHHHHHHHCCCCeEEEEE
Confidence 3467777776543 33 89999999999999987 6678887553 334777777765422243444444
Q ss_pred CcCCCCCchHHHHHhcCCeEEeeeeecCCCc
Q 011289 86 VSMGDKDFVKPLLQKKGTIYFNKVCMKPGKP 116 (489)
Q Consensus 86 ~s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp 116 (489)
.+.|..|. .|.+.+..=.++||+-
T Consensus 94 AcLG~~~~-------vG~I~~~~gpl~PG~g 117 (163)
T PF06866_consen 94 ACLGRPDN-------VGYITLGNGPLKPGAG 117 (163)
T ss_pred CCCCCccc-------ceEEEEcCCCCCCchh
Confidence 56677665 5788899999999973
No 309
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=27.93 E-value=90 Score=26.16 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=24.5
Q ss_pred CcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeC
Q 011289 327 GAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLG 363 (489)
Q Consensus 327 G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttG 363 (489)
|++.. .+-++.+++.++|++++.+.++.+|+.|-
T Consensus 19 Gi~~~---~~~~~~ee~~~~l~~l~~~~d~gII~Ite 52 (100)
T PRK02228 19 GIRKV---YEVPDDEKLDEAVEEVLEDDDVGILVMHD 52 (100)
T ss_pred CCceE---EeeCCHHHHHHHHHHHhhCCCEEEEEEeh
Confidence 77643 22256688999999986556788888864
No 310
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=27.83 E-value=1.6e+02 Score=27.65 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=45.9
Q ss_pred cCCCEEEEeCCCcCCCCCchHHHHHhcC--CeE--------EeeeeecCCCceeeEEEccCCCCccccccEEE-EEcCCC
Q 011289 75 AGIDILLTSGGVSMGDKDFVKPLLQKKG--TIY--------FNKVCMKPGKPLTFAEINIKPTDDVMVNKILA-FGLPGN 143 (489)
Q Consensus 75 ~~~DlvittGG~s~G~~D~~~~~l~~~G--~~~--------f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v-~~LPGn 143 (489)
+.+|++|.+|.++.-....+..+.+.+- +.+ +.|+. + .+..+.-++ +-.+| +.+||.
T Consensus 74 R~ADillVeG~VT~~m~~~l~~~~e~~p~pK~VIAvGaCA~~GGi~--~-~y~~~~gv~---------~vvpVDv~IPGC 141 (181)
T PRK14817 74 RQADLLMVVGTVNCKQAPILQRVYEQMADPKWVMAFGVCASSGGFY--D-NYATVQGID---------RIIPVDVYVPGC 141 (181)
T ss_pred cceeEEEEEecCCccchHHHHHHHHHcccCCEEEEeccccccCCcC--C-CcccccCcc---------ccceeeEEecCC
Confidence 4699999999997776665666665543 222 23332 2 221122121 11355 899999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC
Q 011289 144 PVSCIVCFHLYIVPAIRHLSGW 165 (489)
Q Consensus 144 P~aa~~~~~~~v~P~L~~l~G~ 165 (489)
|..-...++.+ .-+.+++.+.
T Consensus 142 PP~Pe~il~~l-~~l~~ki~~~ 162 (181)
T PRK14817 142 PPRPEQVLDGI-MLLQKKIQNQ 162 (181)
T ss_pred CCCHHHHHHHH-HHHHHHhhcC
Confidence 98888777665 3455565543
No 311
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=27.73 E-value=1.3e+02 Score=29.99 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=36.4
Q ss_pred cceEEEEEEe-CCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 288 TEFSVAILTV-SDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 288 ~~~~v~Ii~~-GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
.++||+||+. |.+- | ..+...+++. |+++..+.+ .|..+ ....++ ++|.||..||.+
T Consensus 2 ~~~kvaVl~~pG~n~------d---~e~~~Al~~a-----G~~v~~v~~-~~~~~-----~~~~l~--~~DgLvipGGfs 59 (261)
T PRK01175 2 ESIRVAVLRMEGTNC------E---DETVKAFRRL-----GVEPEYVHI-NDLAA-----ERKSVS--DYDCLVIPGGFS 59 (261)
T ss_pred CCCEEEEEeCCCCCC------H---HHHHHHHHHC-----CCcEEEEee-ccccc-----cccchh--hCCEEEECCCCC
Confidence 3578999986 4432 1 1345777777 988665543 23211 111233 799999999976
Q ss_pred CCC
Q 011289 367 FTP 369 (489)
Q Consensus 367 ~t~ 369 (489)
.+.
T Consensus 60 ~gD 62 (261)
T PRK01175 60 AGD 62 (261)
T ss_pred ccc
Confidence 654
No 312
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=27.71 E-value=95 Score=31.56 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCCeEEEEEeecC--CHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRD--DEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~D--d~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
--+...|++. .++..+..+.. +.+.+.+.++.+.+.++|.||-.||-|+
T Consensus 40 ~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~ 90 (332)
T cd07766 40 EKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGST 90 (332)
T ss_pred HHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchH
Confidence 3466667766 66666654443 5667777777776656999999988765
No 313
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.63 E-value=1.3e+02 Score=27.87 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=39.2
Q ss_pred EEEeCCcccCCCccCCc---------hHHHHHHHHccccccCCcEEEEEEEcCCCH-------------HHHHHHHHHhh
Q 011289 294 ILTVSDTVASGAGPDRS---------GPRAVSVVNSSSEKLGGAKVVATDVVPDDV-------------GKIKEVLRRWS 351 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~n---------~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~-------------~~I~~~l~~~~ 351 (489)
|+..||.+..|-....+ ...+++.|...- ..+++...++-.+.. ..+.+.+..
T Consensus 2 I~~~GDSiT~G~~~~~~~~~~~~~~w~~~L~~~l~~~~---~~~~viN~Gv~G~tt~~~~~~~~~~~~l~~l~~~l~~-- 76 (208)
T cd01839 2 ILCFGDSNTWGIIPDTGGRYPFEDRWPGVLEKALGANG---ENVRVIEDGLPGRTTVLDDPFFPGRNGLTYLPQALES-- 76 (208)
T ss_pred EEEEecCcccCCCCCCCCcCCcCCCCHHHHHHHHccCC---CCeEEEecCcCCcceeccCccccCcchHHHHHHHHHh--
Confidence 67889999877543221 234556665430 125666666665543 234444432
Q ss_pred hcCCCcEEEEeCCCCC
Q 011289 352 DIDKMDLILTLGGTGF 367 (489)
Q Consensus 352 ~~~~~DlVIttGG~G~ 367 (489)
....|+||...|+=-
T Consensus 77 -~~~pd~vii~lGtND 91 (208)
T cd01839 77 -HSPLDLVIIMLGTND 91 (208)
T ss_pred -CCCCCEEEEeccccc
Confidence 137899999998853
No 314
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=27.56 E-value=2.3e+02 Score=24.77 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=48.9
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCC---------------CHHHHHHHHHHhhhcC
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPD---------------DVGKIKEVLRRWSDID 354 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~D---------------d~~~I~~~l~~~~~~~ 354 (489)
|||.+|.-+.. .+.|+..+++.+.+..... |+++..+. +.| ..+.+.+.++++.
T Consensus 1 Mkilii~gS~r------~~~~t~~l~~~~~~~l~~~-g~e~~~i~-l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~--- 69 (152)
T PF03358_consen 1 MKILIINGSPR------KNSNTRKLAEAVAEQLEEA-GAEVEVID-LADYPLPCCDGDFECPCYIPDDVQELYDKLK--- 69 (152)
T ss_dssp -EEEEEESSSS------TTSHHHHHHHHHHHHHHHT-TEEEEEEE-CTTSHCHHHHHHHHHTGCTSHHHHHHHHHHH---
T ss_pred CEEEEEECcCC------CCCHHHHHHHHHHHHHHHc-CCEEEEEe-ccccchhhcccccccccCCcHHHHHHHhcee---
Confidence 46666654332 5778888887666654444 77776664 343 2344555555443
Q ss_pred CCcEEEEeCCCCCCCCCChHHHHHHhhcc
Q 011289 355 KMDLILTLGGTGFTPRDVTPEATKELIER 383 (489)
Q Consensus 355 ~~DlVIttGG~G~t~~D~T~eav~~~~~~ 383 (489)
++|.||.. +|....-.+-.+..++++
T Consensus 70 ~aD~iI~~---sP~y~~~~s~~lK~~lD~ 95 (152)
T PF03358_consen 70 EADGIIFA---SPVYNGSVSGQLKNFLDR 95 (152)
T ss_dssp HSSEEEEE---EEEBTTBE-HHHHHHHHT
T ss_pred cCCeEEEe---ecEEcCcCChhhhHHHHH
Confidence 58888874 366677777788888875
No 315
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=27.49 E-value=1.5e+02 Score=29.94 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=42.6
Q ss_pred CCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 8 TPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 8 ~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
..||++|..-++- | .+....+...+++.|.+++....++-...++...+.+..+.++|+|+..+-
T Consensus 138 ~~~v~il~~d~~~----------g---~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~~~d~v~~~~~ 202 (347)
T cd06336 138 GKKVALLGPNDAY----------G---QPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEKPDVIFLGGP 202 (347)
T ss_pred CceEEEEccCCch----------h---HHHHHHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHhcCCCEEEEcCC
Confidence 4577877654331 1 234455677788999998877666654555666666665557999987664
No 316
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=27.48 E-value=2.7e+02 Score=31.94 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=46.6
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCC
Q 011289 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF 367 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~ 367 (489)
...+|.||--| |.|...+.++|++. |+++..+.. ... +.+ +. ..++|.||.+||-|-
T Consensus 515 ~~~~IlVID~g---------ds~~~~l~~~L~~~-----G~~v~vv~~-~~~-~~~---~~----~~~~DgLILsgGPGs 571 (717)
T TIGR01815 515 EGRRILLVDHE---------DSFVHTLANYLRQT-----GASVTTLRH-SHA-EAA---FD----ERRPDLVVLSPGPGR 571 (717)
T ss_pred CCCEEEEEECC---------ChhHHHHHHHHHHC-----CCeEEEEEC-CCC-hhh---hh----hcCCCEEEEcCCCCC
Confidence 44577777533 55668899999999 987743322 211 121 11 126999999999886
Q ss_pred CCCCChHHHHHHhhccccc
Q 011289 368 TPRDVTPEATKELIERETP 386 (489)
Q Consensus 368 t~~D~T~eav~~~~~~~l~ 386 (489)
-.|.-..+.+.++.+..+|
T Consensus 572 p~d~~~~~~I~~~~~~~iP 590 (717)
T TIGR01815 572 PADFDVAGTIDAALARGLP 590 (717)
T ss_pred chhcccHHHHHHHHHCCCC
Confidence 4433345666666555444
No 317
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=27.44 E-value=77 Score=33.11 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCeEEEEEee-c-CCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIV-R-DDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v-~-Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
.-+...|++.|.++..+.-+ + -+.+.+.+.++.+.+.++|+||-.||=|+
T Consensus 46 ~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsv 97 (377)
T cd08188 46 DRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSP 97 (377)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 45777788888888766533 3 23455777777776667999999998765
No 318
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.44 E-value=1.7e+02 Score=26.39 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=39.8
Q ss_pred EEEeCCcccCCCccCC-chHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 294 ILTVSDTVASGAGPDR-SGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~-n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
|+.+||.+..|.-... ...|....-... ++++...++-.|..-.. .+.+.+...+.|+||...|+=
T Consensus 2 iv~~GDSit~G~g~~~~~~~~~~~~~~~~-----~~~v~N~g~~G~~~~~~--~~~~~~~~~~pd~vii~~G~N 68 (177)
T cd01844 2 WVFYGTSISQGACASRPGMAWTAILARRL-----GLEVINLGFSGNARLEP--EVAELLRDVPADLYIIDCGPN 68 (177)
T ss_pred EEEEeCchhcCcCCCCCCCcHHHHHHHHh-----CCCeEEeeecccccchH--HHHHHHHhcCCCEEEEEeccC
Confidence 6778999988764322 223333333334 77888888888743221 122333224789999987775
No 319
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=27.41 E-value=1.4e+02 Score=25.88 Aligned_cols=66 Identities=21% Similarity=0.258 Sum_probs=41.8
Q ss_pred EEeCCcccCCCccCCchHHHHHHHH--ccccccCCcEEEEEEEcCCCHHHHHHHHHHhh---hcCCCcEEEEeCCC
Q 011289 295 LTVSDTVASGAGPDRSGPRAVSVVN--SSSEKLGGAKVVATDVVPDDVGKIKEVLRRWS---DIDKMDLILTLGGT 365 (489)
Q Consensus 295 i~~GdEi~~G~~~D~n~~~l~~~l~--~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~---~~~~~DlVIttGG~ 365 (489)
+.+||.+..|.-...+..+...+-+ .. ++++....+-......+...+...+ ...+.|+||...|+
T Consensus 1 v~~GDS~t~g~~~~~~~~~~~~l~~~~~~-----~~~~~n~~~~G~~~~~~~~~~~~~~~~~~~~~~d~vvi~~G~ 71 (179)
T PF13472_consen 1 VFLGDSITAGYGAPNNGSYPDRLAERPGR-----GIEVYNLGVSGATSSDFLARLQRDVLRFKDPKPDLVVISFGT 71 (179)
T ss_dssp EEEESHHHHTTTTSSCTSHHHHHHHHHTC-----CEEEEEEE-TT-BHHHHHHHHHHHCHHHCGTTCSEEEEE--H
T ss_pred CEEccccccCCCCCCCCCHHHHHHHhhCC-----CcEEEEEeecCccHhHHHHHHHHHHhhhccCCCCEEEEEccc
Confidence 4578888776554333333333322 24 8899999999999998877777643 34689999999875
No 320
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=27.19 E-value=1.3e+02 Score=31.55 Aligned_cols=50 Identities=28% Similarity=0.254 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCCeEEEEEeec-C-CHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVR-D-DEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~-D-d~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
..+.+.|++.|.++..+.-+. + ..+.+.+.++.+.+.++|+||-.||=|+
T Consensus 40 ~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 91 (386)
T cd08191 40 AELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSC 91 (386)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 446777888898887665443 2 2344666666665557999999998765
No 321
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=27.06 E-value=1.9e+02 Score=28.19 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
.-.-+...+++.|+++..... .++++...+.++++++++.|-||+.+.
T Consensus 17 ~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (288)
T cd01538 17 DRPNFEAALKELGAEVIVQNA-NGDPAKQISQIENMIAKGVDVLVIAPV 64 (288)
T ss_pred HHHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 334566678899999877644 456777888888888777999998864
No 322
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.83 E-value=2.1e+02 Score=27.23 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
.-..+...+++.|+++... ...+|.+...+.+++++++++|-||.++-
T Consensus 17 ~~~~i~~~~~~~g~~~~i~-~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 17 LANAMKEEAKKQKVNLIVS-IANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred HHHHHHHHHHhcCCEEEEe-cCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3345566788899988654 34567777888888887777999999763
No 323
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=26.71 E-value=1.3e+02 Score=27.65 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=44.2
Q ss_pred EEEeCCcccCCCccCCc----hHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhh---hcCCCcEEEEeCCCC
Q 011289 294 ILTVSDTVASGAGPDRS----GPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWS---DIDKMDLILTLGGTG 366 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~n----~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~---~~~~~DlVIttGG~G 366 (489)
|+.+||.+..|.-.+.. ...+++.+... ...++.+....+-.+....+.+.++... .....|+|+...|+=
T Consensus 2 i~~~GDSit~G~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~N~g~~G~t~~~~~~r~~~~~~~~~~~~~d~V~i~~G~N 79 (204)
T cd04506 2 IVALGDSLTEGVGDETGKGGYVGRLDKLIETK--TVKKVTVQNFGVSGDRSDQLLKRLKTKKVQKELKKADVITITIGGN 79 (204)
T ss_pred EeEEeccccCccCCCCCCCChHHHHHHHHhhh--cCCceEEEeecccchhHHHHHHHHhcchhhhhcccCCEEEEEecch
Confidence 67889999988644322 22333333211 1116788889999998887777655421 113789999887664
No 324
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=26.68 E-value=1.3e+02 Score=31.33 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCeEEEEEeec--CCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVR--DDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~--Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
--+...|++.|.++..+.-+. -+.+.+.+.++.+.+.++|+||-.||=|+
T Consensus 46 ~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~ 97 (377)
T cd08176 46 EKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSP 97 (377)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 346778888898877664332 23455777777666557999998888654
No 325
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=26.53 E-value=1.8e+02 Score=30.21 Aligned_cols=51 Identities=14% Similarity=0.299 Sum_probs=34.5
Q ss_pred HHHHHHHHccccccCCcEEEEEEEcCCC-HHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011289 312 PRAVSVVNSSSEKLGGAKVVATDVVPDD-VGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 312 ~~l~~~l~~~~~~~~G~~v~~~~~v~Dd-~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
..+.+.|++. |+++..+.+.++- .+.+.+.++.+.+ .++|.||-.||=++-
T Consensus 37 ~~v~~~L~~~-----g~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIaiGGGS~~ 88 (374)
T cd08183 37 AWLIEALRAA-----GIEVTHVVVAGEPSVELVDAAVAEARN-AGCDVVIAIGGGSVI 88 (374)
T ss_pred HHHHHHHHHc-----CCeEEEecCCCCcCHHHHHHHHHHHHh-cCCCEEEEecCchHH
Confidence 3455667777 8887666544432 3557777766554 689999999986654
No 326
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.49 E-value=1.4e+02 Score=29.74 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=43.1
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeC
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLG 363 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttG 363 (489)
-|+++|...++.- + .....+.+.+++. |.++......+....++...+.++.+ .++|+|+..+
T Consensus 138 ~~vail~~~~~~g--~---~~~~~~~~~~~~~-----G~~vv~~~~~~~~~~d~~~~v~~l~~-~~pd~v~~~~ 200 (312)
T cd06346 138 KSVATTYINNDYG--V---GLADAFTKAFEAL-----GGTVTNVVAHEEGKSSYSSEVAAAAA-GGPDALVVIG 200 (312)
T ss_pred CeEEEEEccCchh--h---HHHHHHHHHHHHc-----CCEEEEEEeeCCCCCCHHHHHHHHHh-cCCCEEEEec
Confidence 4788887655421 1 1224555667777 99998877777666677777777665 5899999875
No 327
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=26.44 E-value=1.9e+02 Score=28.04 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=51.5
Q ss_pred EEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCCh
Q 011289 294 ILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVT 373 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T 373 (489)
|+.||-|=..|...|.. +.+++.|... ...|+++.. ..+|=+.+.-.+.+.+++++.+.|+||-.|=.| +...+|
T Consensus 4 ILvTGF~PFgg~~~NPS-~~~v~~L~~~--~~~~~~v~~-~~lPv~f~~~~~~l~~~i~~~~Pd~Vi~~G~a~-gr~~it 78 (222)
T PRK13195 4 VLVTGFGPYGVTPVNPA-QLTAEELDGR--TIAGATVIS-RIVPNTFFESIAAAQQAIAEIEPALVIMLGEYP-GRSMIT 78 (222)
T ss_pred EEEeeecCCCCCCcCch-HHHHHhcccc--ccCCeEEEE-EEeCeEehHHHHHHHHHHHHHCCCEEEEeCccC-CcCceE
Confidence 78899998877766654 4555556542 223666554 466666665555666666555899999998544 667777
Q ss_pred HHHH
Q 011289 374 PEAT 377 (489)
Q Consensus 374 ~eav 377 (489)
.|-+
T Consensus 79 lErv 82 (222)
T PRK13195 79 VERL 82 (222)
T ss_pred eEEE
Confidence 7643
No 328
>KOG3445 consensus Mitochondrial/chloroplast ribosomal protein 36a [Translation, ribosomal structure and biogenesis]
Probab=26.44 E-value=72 Score=28.47 Aligned_cols=42 Identities=29% Similarity=0.256 Sum_probs=33.1
Q ss_pred eCCCcCCCCCchHHHHHhcC---CeEEeeeeecCC-CceeeEEEcc
Q 011289 83 SGGVSMGDKDFVKPLLQKKG---TIYFNKVCMKPG-KPLTFAEINI 124 (489)
Q Consensus 83 tGG~s~G~~D~~~~~l~~~G---~~~f~~v~~kPG-kp~~~a~~~~ 124 (489)
-||+|.|-++|+..-|.+++ .-+.--+.-++| .|.+.|.+..
T Consensus 33 wggSSrGmR~Fle~~L~~~a~enP~v~i~v~~rrg~hP~lraeY~N 78 (145)
T KOG3445|consen 33 WGGSSRGMREFLESELPDLARENPGVVIYVEPRRGQHPLLRAEYLN 78 (145)
T ss_pred CCCccHHHHHHHHHHHHHHHhhCCCeEEEEeccCCCCceEEEEecC
Confidence 49999999999998888887 233334667788 8999999864
No 329
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=26.41 E-value=1.5e+02 Score=29.14 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
.-+...+++.|+++........|.+...+.++.++.+++|-||+.+
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~ 64 (298)
T cd06302 19 EGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVP 64 (298)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 3455667789998876544555777788888888776799999875
No 330
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.41 E-value=1.8e+02 Score=29.48 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 38 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
...+.+.+++.|+++.....++-+..++...+.++.+.++|+|+..+.
T Consensus 161 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~~~~~ 208 (362)
T cd06343 161 LKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVLATT 208 (362)
T ss_pred HHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCCEEEEEcC
Confidence 345566677788887766555555555666666665556888887664
No 331
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=26.32 E-value=1.4e+02 Score=28.24 Aligned_cols=66 Identities=21% Similarity=0.215 Sum_probs=49.6
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhh
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELI 381 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~ 381 (489)
|+-.+...+++++. +.++.....-.|+ -+...+|+.+.+ .+++-|+..|++|- .-|++-..+.-+.
T Consensus 46 DSi~~~~~~~~~~~-----~~~~~~~~~eKD~-TD~e~Al~~~~~-~~~~~i~i~Ga~Gg-R~DH~lani~~L~ 111 (203)
T TIGR01378 46 DSIDEEELDFYKKA-----GVKIIVFPPEKDT-TDLELALKYALE-RGADEITILGATGG-RLDHTLANLNLLL 111 (203)
T ss_pred ccCCHHHHHHHHHc-----CCceEEcCCCCCC-CHHHHHHHHHHH-CCCCEEEEEcCCCC-cHHHHHHHHHHHH
Confidence 55556667778877 7777777677776 557888888776 47888999999995 7799887776654
No 332
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=26.31 E-value=95 Score=28.11 Aligned_cols=69 Identities=10% Similarity=0.107 Sum_probs=39.7
Q ss_pred cCCCEEEEeCCCcCCCCCchHHHHHhcC--C-eE-------EeeeeecCCCceeeEEEccCCCCccccccEEE-EEcCCC
Q 011289 75 AGIDILLTSGGVSMGDKDFVKPLLQKKG--T-IY-------FNKVCMKPGKPLTFAEINIKPTDDVMVNKILA-FGLPGN 143 (489)
Q Consensus 75 ~~~DlvittGG~s~G~~D~~~~~l~~~G--~-~~-------f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v-~~LPGn 143 (489)
+++|++|.||.+.......++++.+++- + ++ +.|+... ......-++ +-.+| +.+||.
T Consensus 56 r~aDvllVtG~vt~~~~~~l~~~~e~~p~pk~VIA~GsCA~~GGi~~~--~y~~~~~v~---------~~ipVDi~IPGC 124 (145)
T TIGR01957 56 RQADVMIVAGTVTKKMAPALRRLYDQMPEPKWVISMGACANSGGMFHT--SYSVVQGVD---------RIVPVDVYIPGC 124 (145)
T ss_pred CcceEEEEecCCcHHHHHHHHHHHHhccCCceEEEecceeecCCCccC--CCccccCcc---------cccccceEeCCC
Confidence 3599999999998876666666666542 1 11 1223210 000011111 11345 899999
Q ss_pred hHHHHHHHHHH
Q 011289 144 PVSCIVCFHLY 154 (489)
Q Consensus 144 P~aa~~~~~~~ 154 (489)
|..-...++.+
T Consensus 125 Pp~Pe~i~~~l 135 (145)
T TIGR01957 125 PPRPEALIYGL 135 (145)
T ss_pred CCCHHHHHHHH
Confidence 99888777666
No 333
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=26.30 E-value=1.4e+02 Score=30.99 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCeEEEEEeecC-CHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHH
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRD-DEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPL 97 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~D-d~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~ 97 (489)
..+...|++.|.++....+-++ +.+.+.+.++.+.+.++|+||-.||=|+ -|..+-+
T Consensus 46 ~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv--~D~aK~i 103 (366)
T PRK09423 46 DRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKT--LDTAKAV 103 (366)
T ss_pred HHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHH--HHHHHHH
Confidence 4456667888887754443322 2345666666665557999999998776 4544443
No 334
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=26.28 E-value=2.8e+02 Score=24.70 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=45.8
Q ss_pred EcChHHHHHHHHHhC-CCeEEEEEe--ecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC
Q 011289 34 RDSNRAMLLAAAMQQ-HCKLIDLGI--VRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG 102 (489)
Q Consensus 34 ~dsn~~~l~a~l~~~-G~~~~~~~~--v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G 102 (489)
+|--+..+..+-+.. |+++.++.+ ++|-+-+-++.|++ ++||+|++-|=+|....|-..-...++|
T Consensus 14 vdMg~vai~~lk~~~~~~~i~R~TVPGIKdlpvaakrLiee---eGCd~Vi~lG~~G~t~~Dk~~~~~aS~G 82 (154)
T COG1731 14 VDMGSVAIDELKKLLPGIKIKRYTVPGIKDLPVAAKRLIEE---EGCDIVIALGWVGPTEKDKYSYLAASIG 82 (154)
T ss_pred ecchHHHHHHHHhhCCCCceEEeeCCCcccChHHHHHHHHh---cCCcEEEEccCcCcchhhHHHHHHHhhH
Confidence 455566666654443 577777654 45666665555554 4899999999999999998766555555
No 335
>PRK05637 anthranilate synthase component II; Provisional
Probab=26.10 E-value=1.1e+02 Score=29.30 Aligned_cols=51 Identities=24% Similarity=0.213 Sum_probs=34.2
Q ss_pred cCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCC
Q 011289 307 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRD 371 (489)
Q Consensus 307 ~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D 371 (489)
.|++...+.+.|++. |+.+ .+++.|.. + +.+.. .++|.||.+||-|--.|+
T Consensus 10 ~dsf~~nl~~~l~~~-----g~~~---~v~~~~~~-~-~~l~~----~~~~~iIlsgGPg~~~d~ 60 (208)
T PRK05637 10 HDSFVYNLVDAFAVA-----GYKC---TVFRNTVP-V-EEILA----ANPDLICLSPGPGHPRDA 60 (208)
T ss_pred CcCHHHHHHHHHHHC-----CCcE---EEEeCCCC-H-HHHHh----cCCCEEEEeCCCCCHHHh
Confidence 467888999999998 8655 45555521 1 22221 268999999999865443
No 336
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=26.09 E-value=4.6e+02 Score=27.32 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=43.0
Q ss_pred cceEEEEEE-eCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 288 TEFSVAILT-VSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 288 ~~~~v~Ii~-~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
...+++||= .|. -|..++..|.+. |++|.-+.. |+.+. ...++. ++|+||.+
T Consensus 97 ~~~~I~IiGG~Gl----------mG~slA~~l~~~-----G~~V~~~d~--~~~~~----~~~~~~--~aDlVila---- 149 (374)
T PRK11199 97 DLRPVVIVGGKGQ----------LGRLFAKMLTLS-----GYQVRILEQ--DDWDR----AEDILA--DAGMVIVS---- 149 (374)
T ss_pred ccceEEEEcCCCh----------hhHHHHHHHHHC-----CCeEEEeCC--Ccchh----HHHHHh--cCCEEEEe----
Confidence 335777764 443 257888899988 887665553 33322 233444 79999985
Q ss_pred CCCCCChHHHHHHhhc
Q 011289 367 FTPRDVTPEATKELIE 382 (489)
Q Consensus 367 ~t~~D~T~eav~~~~~ 382 (489)
++.+.+.+.+.++..
T Consensus 150 -vP~~~~~~~~~~l~~ 164 (374)
T PRK11199 150 -VPIHLTEEVIARLPP 164 (374)
T ss_pred -CcHHHHHHHHHHHhC
Confidence 466677888877644
No 337
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.97 E-value=2.7e+02 Score=28.15 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=54.1
Q ss_pred ceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCC-CHHHHHHHHHHhhhcCCCcEEEEeCCCCC
Q 011289 289 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPD-DVGKIKEVLRRWSDIDKMDLILTLGGTGF 367 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~D-d~~~I~~~l~~~~~~~~~DlVIttGG~G~ 367 (489)
.|+.++|.+||.= .+....+.-.+.+.++ |++...+..-.+ +.+++.+.|+++-++.+.|-||.-= |
T Consensus 33 ~P~Laii~vg~d~--------as~~Yv~~k~k~~~~~-Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvql---P 100 (284)
T PRK14177 33 IPKLATILVGNNP--------ASETYVSMKVKACHKV-GMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQH---P 100 (284)
T ss_pred CCeEEEEEeCCCh--------hHHHHHHHHHHHHHHc-CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcC---C
Confidence 5789999998742 2233333322233333 998887776665 6788999999886656777777632 3
Q ss_pred CCCCChHHHHHHhh--ccccccHH
Q 011289 368 TPRDVTPEATKELI--ERETPGLL 389 (489)
Q Consensus 368 t~~D~T~eav~~~~--~~~l~g~~ 389 (489)
=+..+..+.+.+.. ++++.||.
T Consensus 101 Lp~~i~~~~i~~~I~p~KDVDGl~ 124 (284)
T PRK14177 101 VPSQIDERAAFDRIALEKDVDGVT 124 (284)
T ss_pred CCCCCCHHHHHhccCcccccccCC
Confidence 33455555555543 35555543
No 338
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=25.97 E-value=3e+02 Score=27.20 Aligned_cols=72 Identities=21% Similarity=0.377 Sum_probs=43.7
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEc-ChHHHHHH----HHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEE
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRD-SNRAMLLA----AAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILL 81 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~d-sn~~~l~a----~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlvi 81 (489)
.||.|+|++- |++. ..|+.-+ ++.++|++ +++.-|+.|+. ..=|.+|++....-+.. .=||
T Consensus 51 ykPvIGIL~h------pg~g--~~~rl~n~t~~~yIAASYVK~aEsgGARViP--li~nepEe~lfqklelv----NGvi 116 (340)
T KOG1559|consen 51 YKPVIGILSH------PGDG--ASGRLKNATGRSYIAASYVKLAESGGARVIP--LIYNEPEEILFQKLELV----NGVI 116 (340)
T ss_pred cCceeEEecc------CCCC--ccceeccccCcchhHHHHHHHHHcCCceEEE--EecCCcHHHHHHHHHHh----ceeE
Confidence 4789999985 3321 1234444 66677765 45666777754 45577777666655554 4477
Q ss_pred EeCCCcCCCCCc
Q 011289 82 TSGGVSMGDKDF 93 (489)
Q Consensus 82 ttGG~s~G~~D~ 93 (489)
.||| -.-..||
T Consensus 117 ftGG-wak~~dY 127 (340)
T KOG1559|consen 117 FTGG-WAKRGDY 127 (340)
T ss_pred ecCc-ccccccH
Confidence 7787 3344555
No 339
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=25.86 E-value=3.7e+02 Score=26.65 Aligned_cols=82 Identities=17% Similarity=0.048 Sum_probs=45.2
Q ss_pred cceEEEEEEeCCcccCCCccCC-chHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 288 TEFSVAILTVSDTVASGAGPDR-SGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~-n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
.+.+|+|+.-|+.-... .+. ++..+.+.|++. |+++..+..-.+. .+.+. ..++|+|+..-+-.
T Consensus 3 ~~~~v~~~~g~~~~~~~--~~~~s~~~i~~al~~~-----g~~v~~i~~~~~~----~~~~~----~~~~D~v~~~~~g~ 67 (304)
T PRK01372 3 MFGKVAVLMGGTSAERE--VSLNSGAAVLAALREA-----GYDAHPIDPGEDI----AAQLK----ELGFDRVFNALHGR 67 (304)
T ss_pred CCcEEEEEeCCCCCCce--EeHHhHHHHHHHHHHC-----CCEEEEEecCcch----HHHhc----cCCCCEEEEecCCC
Confidence 44689988866432211 111 346777888888 9998766433222 22222 23789999762211
Q ss_pred CCCCCChHHHHHHhhcccc
Q 011289 367 FTPRDVTPEATKELIERET 385 (489)
Q Consensus 367 ~t~~D~T~eav~~~~~~~l 385 (489)
.+ .|....++.+..+.+.
T Consensus 68 ~~-~~~~~~~~le~~gi~~ 85 (304)
T PRK01372 68 GG-EDGTIQGLLELLGIPY 85 (304)
T ss_pred CC-CccHHHHHHHHcCCCc
Confidence 22 3555556666556554
No 340
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=25.85 E-value=1.8e+02 Score=27.96 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=26.3
Q ss_pred HHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Q 011289 41 LLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGD 90 (489)
Q Consensus 41 l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~ 90 (489)
+...+++.|+++..+.+ .|. + ++ ++|.||..||.+.++
T Consensus 17 ~~~al~~~G~~~~~i~~-~~~-~---------l~-~~d~lilpGG~~~~d 54 (227)
T TIGR01737 17 TVYALRLLGVDAEIVWY-EDG-S---------LP-DYDGVVLPGGFSYGD 54 (227)
T ss_pred HHHHHHHCCCeEEEEec-CCC-C---------CC-CCCEEEECCCCcccc
Confidence 45677889999877633 221 1 34 499999999987655
No 341
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=25.70 E-value=1.5e+02 Score=30.13 Aligned_cols=67 Identities=19% Similarity=0.375 Sum_probs=50.9
Q ss_pred CcEEcChHHHHHHHHHhCCCeEEEEEeecCC-------HHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHh
Q 011289 31 GQIRDSNRAMLLAAAMQQHCKLIDLGIVRDD-------EEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQK 100 (489)
Q Consensus 31 g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd-------~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~ 100 (489)
+.+.|.-+-+-+..++++|++.+.+..+.-| +.+-.+.+++.++. .|+=|..||+|--.+| +++|++
T Consensus 146 ~dVmedP~eWArk~Vk~fgadmvTiHlIsTdPki~D~p~~EAak~lEdvLqA-VdvPiiiGGSGnpeKD--peVlek 219 (403)
T COG2069 146 DDVMEDPGEWARKCVKKFGADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQA-VDVPIIIGGSGNPEKD--PEVLEK 219 (403)
T ss_pred HHHhhCHHHHHHHHHHHhCCceEEEEeecCCccccCCCHHHHHHHHHHHHHh-cCcCEEecCCCCCccC--HHHHHH
Confidence 4566777888889999999998887655433 34456677888874 8999999999999999 445544
No 342
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=25.58 E-value=2.5e+02 Score=26.98 Aligned_cols=80 Identities=26% Similarity=0.373 Sum_probs=52.3
Q ss_pred EEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCCh
Q 011289 294 ILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVT 373 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T 373 (489)
|+.||-+=..|...|. +..+++.|... .+.++++ ...++|=+.+...+.+..++...+.|+||..|=-| +.+.++
T Consensus 4 ILvTGF~PF~~~~~NP-S~~~~~~L~~~--~~~~~~i-~~~~lPV~y~~~~~~l~~~l~~~~Pd~vih~G~a~-~~~~i~ 78 (215)
T PRK13197 4 ILVTGFDPFGGEKINP-SWEAVKQLPGK--EIGGAEI-IKRQLPTVFGKSAEVLKEAIEEVQPDAVICIGQAG-GRTDIT 78 (215)
T ss_pred EEEeeccCCCCCCCCc-HHHHHHHcccc--ccCCcEE-EEEEECCChHHHHHHHHHHHHHhCCCEEEEeccCC-CCCcEE
Confidence 8888988877665544 45566666553 2225554 44678867766666666666545899999998443 667776
Q ss_pred HHHHH
Q 011289 374 PEATK 378 (489)
Q Consensus 374 ~eav~ 378 (489)
.|-++
T Consensus 79 lEr~A 83 (215)
T PRK13197 79 PERVA 83 (215)
T ss_pred eEeee
Confidence 66443
No 343
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=25.53 E-value=62 Score=26.66 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=25.7
Q ss_pred CcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEe
Q 011289 327 GAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTL 362 (489)
Q Consensus 327 G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVItt 362 (489)
|++..... .+++++.++|+++++...+.+||+|
T Consensus 17 Gv~~~~~~---~~~ee~~~~l~~l~~~~~~gIIii~ 49 (95)
T PF01990_consen 17 GVEGVYVN---TDPEEAEEALKELLKDEDVGIIIIT 49 (95)
T ss_dssp TSEEEEES---HSHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCCccCC---CCHHHHHHHHHHHhcCCCccEEEee
Confidence 87765432 5889999999999965688888875
No 344
>PLN02834 3-dehydroquinate synthase
Probab=25.34 E-value=1.4e+02 Score=32.04 Aligned_cols=56 Identities=27% Similarity=0.372 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCeEEEEE-eecC-----CHHHHHHHHHHHHhcCCC---EEEEeCCCcCCCCCchH
Q 011289 38 RAMLLAAAMQQHCKLIDLG-IVRD-----DEEELEKTLDNAFSAGID---ILLTSGGVSMGDKDFVK 95 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~-~v~D-----d~~~i~~~l~~~~~~~~D---lvittGG~s~G~~D~~~ 95 (489)
...+.+.|++.|+++..+. +++| +.+.+.+.++.+.+.++| +||-.||=+++ |...
T Consensus 116 ~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~--D~ak 180 (433)
T PLN02834 116 LEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGGGVIG--DMCG 180 (433)
T ss_pred HHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChHHH--HHHH
Confidence 3446677888898765433 3454 677788877777665566 99999987664 4443
No 345
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=25.29 E-value=1.9e+02 Score=22.59 Aligned_cols=46 Identities=15% Similarity=0.050 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
...-+...|++.|+.+.... ....+...++.|-..++.++|+.|..
T Consensus 16 ~a~~~~~~Lr~~g~~v~~d~----~~~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 16 YAKEVAKKLSDAGIRVEVDL----RNEKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred HHHHHHHHHHHCCCEEEEEC----CCCCHHHHHHHHHHcCCCEEEEECcc
Confidence 35677888999998875422 23477788888766689999999954
No 346
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=25.27 E-value=1.8e+02 Score=35.47 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=47.2
Q ss_pred CCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 30 RGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 30 ~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
.|.+.|---.++..+|+.+|++|+++|+=-. .+.|.+++++. ++|+|-.|+-....-. .+.++++++
T Consensus 760 ~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp-~e~iv~aa~e~---~~diVgLS~L~t~s~~-~m~~~i~~L 826 (1229)
T PRK09490 760 KGDVHDIGKNIVGVVLQCNNYEVIDLGVMVP-AEKILETAKEE---NADIIGLSGLITPSLD-EMVHVAKEM 826 (1229)
T ss_pred CCCcchHHHHHHHHHHHhCCCEEEECCCCCC-HHHHHHHHHHh---CCCEEEEcCcchhhHH-HHHHHHHHH
Confidence 4555666678999999999999999985332 56677776654 5999999986554333 345555544
No 347
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=25.26 E-value=2.3e+02 Score=27.22 Aligned_cols=80 Identities=19% Similarity=0.162 Sum_probs=55.4
Q ss_pred EEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCCh
Q 011289 294 ILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVT 373 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T 373 (489)
|+.||-+-..|...|.+ ..+++.|... ...|++ ....++|=+.+...+.+.++++..+.|+||..|=.+ +.+.++
T Consensus 4 ILvTGF~PF~~~~~NPS-~~~~~~L~~~--~~~~~~-v~~~~LPV~~~~~~~~l~~~~~~~~Pd~vi~~G~a~-gr~~i~ 78 (211)
T PRK13196 4 LLLTGFEPFHTHPVNPS-AQAAQALNGE--QAGALR-VHSALLPVEPRAAMAALSRLLDELQPSAVLLTGLAA-GRPQVT 78 (211)
T ss_pred EEEEeecCCCCCCCCcH-HHHHHhcccc--cCCCcE-EEEEEeCCChhHHHHHHHHHHHHhCCCEEEEecccC-CcCcEE
Confidence 67888888877655543 4455555543 122555 456788888888888888888756789999987444 667888
Q ss_pred HHHHH
Q 011289 374 PEATK 378 (489)
Q Consensus 374 ~eav~ 378 (489)
.|.++
T Consensus 79 lEr~A 83 (211)
T PRK13196 79 LERVA 83 (211)
T ss_pred EEEEE
Confidence 77654
No 348
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.19 E-value=4.4e+02 Score=25.07 Aligned_cols=47 Identities=13% Similarity=-0.021 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
..+...+++.|+++... ...+|++...+.++.+.+.++|-||..++.
T Consensus 19 ~~i~~~a~~~g~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgii~~~~~ 65 (269)
T cd06281 19 SGAEDRLRAAGYSLLIA-NSLNDPERELEILRSFEQRRMDGIIIAPGD 65 (269)
T ss_pred HHHHHHHHHcCCEEEEE-eCCCChHHHHHHHHHHHHcCCCEEEEecCC
Confidence 34567788999997755 346677778888888776668999988754
No 349
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=25.18 E-value=1e+02 Score=29.03 Aligned_cols=76 Identities=12% Similarity=0.162 Sum_probs=43.3
Q ss_pred cCCCEEEEeCCCcCCCCCchHHHHHhcC--Ce-E-------EeeeeecCCCceeeEEEccCCCCccccccEEE-EEcCCC
Q 011289 75 AGIDILLTSGGVSMGDKDFVKPLLQKKG--TI-Y-------FNKVCMKPGKPLTFAEINIKPTDDVMVNKILA-FGLPGN 143 (489)
Q Consensus 75 ~~~DlvittGG~s~G~~D~~~~~l~~~G--~~-~-------f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v-~~LPGn 143 (489)
+.+|++|.+|-++.-....+..+.+++- +. + +.|+.-..+.. .-++ +-.+| +.+||.
T Consensus 72 R~ADvllVtG~VT~~m~~~l~~~yeqmp~pk~VIAvGsCA~~GGi~~~y~~~---~gv~---------~vvpVDv~IPGC 139 (186)
T PRK14814 72 RQADMILVLGTITYKMAPVLRQIYDQMAEPKFVISVGACASSGGMFHTYGVL---QGVD---------RILPVDVYVPGC 139 (186)
T ss_pred ccceEEEEeccCchhhHHHHHHHHHhcCCCCeEEEeccccccCCccCcCCCC---cCcc---------ccccccEEecCC
Confidence 3599999999988776666666666643 21 1 22332111111 1111 11455 789999
Q ss_pred hHHHHHHHHHHHHHHHHHhc
Q 011289 144 PVSCIVCFHLYIVPAIRHLS 163 (489)
Q Consensus 144 P~aa~~~~~~~v~P~L~~l~ 163 (489)
|..-...++.+ .-+..++.
T Consensus 140 PP~Pe~il~~l-~~L~~~i~ 158 (186)
T PRK14814 140 PPRPEAILDAL-VKLQTKLK 158 (186)
T ss_pred CCCHHHHHHHH-HHHHHHHh
Confidence 99888776655 34444443
No 350
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=25.10 E-value=81 Score=24.77 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCC
Q 011289 338 DDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDV 372 (489)
Q Consensus 338 Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~ 372 (489)
.|.+.|.++|..... +..+++|.+||.-.|.|.+
T Consensus 15 ~D~~~i~~~Ld~~~~-~~~~~~lvhGga~~GaD~i 48 (71)
T PF10686_consen 15 TDHELIWAALDKVHA-RHPDMVLVHGGAPKGADRI 48 (71)
T ss_pred ccHHHHHHHHHHHHH-hCCCEEEEECCCCCCHHHH
Confidence 377889999998876 5689999999986555544
No 351
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.02 E-value=1.9e+02 Score=28.15 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=32.7
Q ss_pred HHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 41 LLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 41 l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
+...+++.|+++..+..-..+++...+.++.++.+++|-||..+
T Consensus 21 i~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~ 64 (294)
T cd06316 21 AKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIP 64 (294)
T ss_pred HHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 45568899999875544456777777888887776799888864
No 352
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=24.95 E-value=1.4e+02 Score=30.87 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCCEEEEe----CCCcCCCCCchHHHHHhcCCeEEeeeeecCCC
Q 011289 64 ELEKTLDNAFSAGIDILLTS----GGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGK 115 (489)
Q Consensus 64 ~i~~~l~~~~~~~~Dlvitt----GG~s~G~~D~~~~~l~~~G~~~f~~v~~kPGk 115 (489)
+-.+.+.++++ ++|+++.| ||+|.|-.-.+.++++++| .+.-.|..+|-+
T Consensus 84 e~~~~I~~~l~-g~dmvfitaG~GGGTGtGaaPVvakiake~g-~ltvavvt~Pf~ 137 (338)
T COG0206 84 ESIEEIEEALK-GADMVFVTAGMGGGTGTGAAPVVAEIAKELG-ALTVAVVTLPFS 137 (338)
T ss_pred HHHHHHHHHhc-cCCeEEEEeeecCCccccccHHHHHHHHhcC-CcEEEEEEecch
Confidence 34555666776 69965544 6888888999999999976 344455555543
No 353
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=24.88 E-value=94 Score=28.10 Aligned_cols=70 Identities=11% Similarity=0.204 Sum_probs=42.6
Q ss_pred ceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHH-------HHHHhhhcCCCcEEEE
Q 011289 289 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKE-------VLRRWSDIDKMDLILT 361 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~-------~l~~~~~~~~~DlVIt 361 (489)
+.++++|=.|+- |..+++.|.+. |+++..+-.-++..+.+.+ ...++.+ ++|+||+
T Consensus 1 m~~Ig~IGlG~m----------G~~~a~~L~~~-----g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~--~~dvvi~ 63 (163)
T PF03446_consen 1 MMKIGFIGLGNM----------GSAMARNLAKA-----GYEVTVYDRSPEKAEALAEAGAEVADSPAEAAE--QADVVIL 63 (163)
T ss_dssp -BEEEEE--SHH----------HHHHHHHHHHT-----TTEEEEEESSHHHHHHHHHTTEEEESSHHHHHH--HBSEEEE
T ss_pred CCEEEEEchHHH----------HHHHHHHHHhc-----CCeEEeeccchhhhhhhHHhhhhhhhhhhhHhh--cccceEe
Confidence 357777766642 56788888888 9998877755555555543 2466666 7899998
Q ss_pred eCCCCCCCCCChHHHHHH
Q 011289 362 LGGTGFTPRDVTPEATKE 379 (489)
Q Consensus 362 tGG~G~t~~D~T~eav~~ 379 (489)
.= ..++.+.+++..
T Consensus 64 ~v----~~~~~v~~v~~~ 77 (163)
T PF03446_consen 64 CV----PDDDAVEAVLFG 77 (163)
T ss_dssp -S----SSHHHHHHHHHC
T ss_pred ec----ccchhhhhhhhh
Confidence 52 233444555544
No 354
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=24.86 E-value=1.8e+02 Score=29.48 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
..+...+++.|.+++.....+-...++...+.++.+.++|+|++.+
T Consensus 151 ~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~~~pd~v~~~~ 196 (348)
T cd06355 151 KILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAAKPDVVVSTV 196 (348)
T ss_pred HHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHHhCCCEEEEec
Confidence 3445567777777776665654555666666665555678777643
No 355
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=24.83 E-value=1.5e+02 Score=28.03 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=35.2
Q ss_pred HHHHHHhCCCeEEEEE---eec-CCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 41 LLAAAMQQHCKLIDLG---IVR-DDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 41 l~a~l~~~G~~~~~~~---~v~-Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
+.++|++.|+++.... +.+ .+.+.+...+++....++|.||.|=.-+
T Consensus 3 l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~a 53 (231)
T PF02602_consen 3 LAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNA 53 (231)
T ss_dssp HHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHH
T ss_pred HHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHH
Confidence 6788999999999876 445 6677788888766433589999886544
No 356
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=24.79 E-value=2e+02 Score=26.47 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=28.5
Q ss_pred hHHHHHHHHccccccCC---cEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011289 311 GPRAVSVVNSSSEKLGG---AKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 311 ~~~l~~~l~~~~~~~~G---~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
...+.++|++. | +++..+....++. ...++ ++|.||.+||-+-.
T Consensus 13 ~~~~~~~l~~~-----g~~~~~~~~~~~~~~~~-------~~~~~--~~dgvil~Gg~~~~ 59 (188)
T cd01741 13 PGLFEDLLREA-----GAETIEIDVVDVYAGEL-------LPDLD--DYDGLVILGGPMSV 59 (188)
T ss_pred cchHHHHHHhc-----CCCCceEEEEecCCCCC-------CCCcc--cCCEEEECCCCccC
Confidence 45667788887 7 5666555444432 11223 89999999997654
No 357
>PRK15138 aldehyde reductase; Provisional
Probab=24.70 E-value=1.4e+02 Score=31.31 Aligned_cols=46 Identities=28% Similarity=0.371 Sum_probs=29.6
Q ss_pred HHHHHHhCCCeEEEEE-eecC-CHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 41 LLAAAMQQHCKLIDLG-IVRD-DEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 41 l~a~l~~~G~~~~~~~-~v~D-d~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
+...|+ |.++..+. +.++ +.+.+.+..+.+.+.++|+||-.||=|+
T Consensus 50 v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 97 (387)
T PRK15138 50 VLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGSV 97 (387)
T ss_pred HHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHH
Confidence 444453 66676664 3332 2456777777766667999998888654
No 358
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=24.67 E-value=1.8e+02 Score=33.28 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=43.0
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
++|||.+...|.- ..|.-.-++..+++..|++|. ++..-.+++++.++. +++++|+|+.++=
T Consensus 581 ~rpkV~LatlG~d-------------~H~~ra~fv~~~l~~~GfeV~-~~~~~~s~e~~v~aa---~~~~a~ivvlcs~ 642 (714)
T PRK09426 581 RRPRILVAKMGQD-------------GHDRGAKVIATAFADLGFDVD-IGPLFQTPEEAARQA---VENDVHVVGVSSL 642 (714)
T ss_pred CCceEEEEecCCc-------------chhHhHHHHHHHHHhCCeeEe-cCCCCCCHHHHHHHH---HHcCCCEEEEecc
Confidence 5789999888852 145556789999999999994 443223455444444 3447999999873
No 359
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=24.65 E-value=2.3e+02 Score=27.99 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
..+.+.+++.|.++.....++.+...+...+.++.+.+.|+||..+
T Consensus 153 ~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~~vi~~~ 198 (334)
T cd06342 153 DEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAANPDAVFFGG 198 (334)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcC
Confidence 4566778888999888776765555666666666655689998765
No 360
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=24.65 E-value=1e+02 Score=29.13 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=0.0
Q ss_pred EEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEE
Q 011289 291 SVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILT 361 (489)
Q Consensus 291 ~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIt 361 (489)
++++|++ |+.-.-..+.|+.+.+.+ |+.+.......|..+.+.++++++.+ +++|+|++
T Consensus 31 ~v~lis~----------D~~R~ga~eQL~~~a~~l-~vp~~~~~~~~~~~~~~~~~l~~~~~-~~~D~vlI 89 (196)
T PF00448_consen 31 KVALISA----------DTYRIGAVEQLKTYAEIL-GVPFYVARTESDPAEIAREALEKFRK-KGYDLVLI 89 (196)
T ss_dssp -EEEEEE----------STSSTHHHHHHHHHHHHH-TEEEEESSTTSCHHHHHHHHHHHHHH-TTSSEEEE
T ss_pred cceeecC----------CCCCccHHHHHHHHHHHh-ccccchhhcchhhHHHHHHHHHHHhh-cCCCEEEE
No 361
>PRK09065 glutamine amidotransferase; Provisional
Probab=24.57 E-value=1.9e+02 Score=28.14 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=41.2
Q ss_pred eEEEEEEeCCcccC-CCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011289 290 FSVAILTVSDTVAS-GAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~-G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
.+++|+.+++.--. -......+.++.+.+... |+++..+.+..++. +-. ++ ++|.||.+||-.-.
T Consensus 2 ~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~------~p~-~~--~~dgvvi~Gg~~~~ 67 (237)
T PRK09065 2 KPLLIIQTGTPPPSIRARYGDFPHWIRVALGLA-----EQPVVVVRVFAGEP------LPA-PD--DFAGVIITGSWAMV 67 (237)
T ss_pred CcEEEEECCCCChhHHhhcCCHHHHHHHHhccC-----CceEEEEeccCCCC------CCC-hh--hcCEEEEeCCCccc
Confidence 46889988763210 012234456677777766 88877776665542 111 22 68999999987654
Q ss_pred CCC
Q 011289 369 PRD 371 (489)
Q Consensus 369 ~~D 371 (489)
.+|
T Consensus 68 ~d~ 70 (237)
T PRK09065 68 TDR 70 (237)
T ss_pred CCC
Confidence 443
No 362
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=24.51 E-value=1.1e+02 Score=28.81 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=43.0
Q ss_pred cCCCEEEEeCCCcCCCCCchHHHHHhcC--CeE-EeeeeecCCCc-----eeeEEEccCCCCccccccEEE-EEcCCChH
Q 011289 75 AGIDILLTSGGVSMGDKDFVKPLLQKKG--TIY-FNKVCMKPGKP-----LTFAEINIKPTDDVMVNKILA-FGLPGNPV 145 (489)
Q Consensus 75 ~~~DlvittGG~s~G~~D~~~~~l~~~G--~~~-f~~v~~kPGkp-----~~~a~~~~~~~~~~~~~~~~v-~~LPGnP~ 145 (489)
+.||++|+||.++.-....+..+.+.+- +.+ --|----=|.+ ..++-++ +-.+| +.+||.|-
T Consensus 80 RhADvllVtG~VT~~m~~~l~~~~e~~p~pK~VIAvGsCA~~GGif~~sy~~~~gvd---------~vIpVDv~IPGCPP 150 (182)
T PRK14816 80 RQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKSYHVLNGVD---------KILPVDVYIPGCPP 150 (182)
T ss_pred CcceEEEEecCCcchhHHHHHHHHHhcCCCCEEEEeccccccCCccccCCccCCCcc---------ccccccEEeeCcCC
Confidence 3599999999998877777777777543 221 11111111111 0111111 11345 78999998
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011289 146 SCIVCFHLYIVPAIRHL 162 (489)
Q Consensus 146 aa~~~~~~~v~P~L~~l 162 (489)
.-...++.++ -++++.
T Consensus 151 ~Pe~Il~~l~-~L~~ki 166 (182)
T PRK14816 151 RPEAFYYGMM-QLQRKV 166 (182)
T ss_pred CHHHHHHHHH-HHHHHh
Confidence 8887776663 244443
No 363
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=24.49 E-value=3.2e+02 Score=25.76 Aligned_cols=46 Identities=15% Similarity=0.002 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
.-+...+++.|+++.... ..+|.+...+.++.+..+++|-||+.+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd01575 19 QGISDVLEAAGYQLLLGN-TGYSPEREEELLRTLLSRRPAGLILTGL 64 (268)
T ss_pred HHHHHHHHHcCCEEEEec-CCCCchhHHHHHHHHHHcCCCEEEEeCC
Confidence 345667889999876643 3556677778888877767999999864
No 364
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=24.24 E-value=2.1e+02 Score=29.20 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=32.9
Q ss_pred HHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 41 LLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 41 l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
+...++++|+++........|.+.-.+.++.++++++|.||.+.
T Consensus 45 i~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~ 88 (336)
T PRK15408 45 AKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSA 88 (336)
T ss_pred HHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 45667889999875444455566666888888887899999974
No 365
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=24.20 E-value=1.3e+02 Score=28.26 Aligned_cols=79 Identities=8% Similarity=0.071 Sum_probs=45.4
Q ss_pred cCCCEEEEeCCCcCCCCCchHHHHHhcC--C-eE-------EeeeeecCCCceeeEEEccCCCCccccccEEE-EEcCCC
Q 011289 75 AGIDILLTSGGVSMGDKDFVKPLLQKKG--T-IY-------FNKVCMKPGKPLTFAEINIKPTDDVMVNKILA-FGLPGN 143 (489)
Q Consensus 75 ~~~DlvittGG~s~G~~D~~~~~l~~~G--~-~~-------f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v-~~LPGn 143 (489)
+.+|++|.+|.++......+..+.+++- + ++ +.|+.-. + +....-++ +-.+| +.+||.
T Consensus 73 r~aDvllV~G~vt~~~~~~l~~~~e~mp~pk~VIA~GaCA~~GGif~~-s-y~~~~gv~---------~~ipVDv~IPGC 141 (183)
T PRK06411 73 RQADLMIVAGTLTNKMAPALRRLYDQMPEPKWVISMGSCANSGGMYHY-S-YSVVQGVD---------RIVPVDVYVPGC 141 (183)
T ss_pred CceeEEEEEeCCCccchHHHHHHHHHcCcCCeEEEEecccccCCcccC-C-CccccCcc---------cccccceEeCCC
Confidence 3599999999998877666666666543 2 22 1223211 0 10111111 11355 899999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCC
Q 011289 144 PVSCIVCFHLYIVPAIRHLSGW 165 (489)
Q Consensus 144 P~aa~~~~~~~v~P~L~~l~G~ 165 (489)
|..-...++.+ .-+++++.+.
T Consensus 142 PP~Pe~il~~l-~~l~~~i~~~ 162 (183)
T PRK06411 142 PPRPEALLYGI-LKLQKKIRQS 162 (183)
T ss_pred CCCHHHHHHHH-HHHHHHHhcc
Confidence 98888777766 4455666543
No 366
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=24.18 E-value=43 Score=35.74 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGD 90 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~ 90 (489)
.+..|..++.+.|+..-.+.+++.+..++.+.|.+- ...|.|.-||++++|.
T Consensus 159 ~~~~l~~~l~~aglP~g~v~~v~~~~~~~~~~l~~~--~~vd~V~ftGs~~~g~ 210 (451)
T cd07103 159 SALALAELAEEAGLPAGVLNVVTGSPAEIGEALCAS--PRVRKISFTGSTAVGK 210 (451)
T ss_pred HHHHHHHHHHHcCCCcccEEEEecCchhHHHHHhcC--CCCCEEEEECCHHHHH
Confidence 456788889998887777777876555455544322 2479999999987654
No 367
>PRK13057 putative lipid kinase; Reviewed
Probab=24.13 E-value=1.9e+02 Score=28.75 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
.-.-+...|++.|+++... .........+..++.. +++|.||..||=|. +.+++..+
T Consensus 14 ~~~~i~~~l~~~g~~~~~~--~t~~~~~a~~~~~~~~-~~~d~iiv~GGDGT-----v~~v~~~l 70 (287)
T PRK13057 14 ALAAARAALEAAGLELVEP--PAEDPDDLSEVIEAYA-DGVDLVIVGGGDGT-----LNAAAPAL 70 (287)
T ss_pred hHHHHHHHHHHcCCeEEEE--ecCCHHHHHHHHHHHH-cCCCEEEEECchHH-----HHHHHHHH
Confidence 3457788899999986543 3334445555555533 36899999999774 67777665
No 368
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=24.09 E-value=93 Score=32.02 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=31.0
Q ss_pred HHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 41 LLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 41 l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
+.+.|++.+.+...+.-+ -+.+.+.+.++.+.+.++|.||-.||=|+
T Consensus 42 l~~~L~~~~~~~~~~~~~-p~~~~v~~~~~~~~~~~~D~iIavGGGs~ 88 (347)
T cd08172 42 LPESLAAGEAFVLRYDGE-CSEENIERLAAQAKENGADVIIGIGGGKV 88 (347)
T ss_pred HHHHHhcCeEEEEEeCCC-CCHHHHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 344444456555444434 45677888887777667999998888665
No 369
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.08 E-value=1.8e+02 Score=29.72 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=44.5
Q ss_pred ceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeC
Q 011289 289 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLG 363 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttG 363 (489)
.-|+++|...+. .|+ .....+.+.+++. |+++......+....++...+.++.. .++|+|+..+
T Consensus 140 ~~kvaiv~~~~~--~g~---~~~~~~~~~~~~~-----G~~vv~~~~~~~~~~D~~~~v~~i~~-~~pd~V~~~~ 203 (351)
T cd06334 140 GKKIALVYHDSP--FGK---EPIEALKALAEKL-----GFEVVLEPVPPPGPNDQKAQWLQIRR-SGPDYVILWG 203 (351)
T ss_pred CCeEEEEeCCCc--cch---hhHHHHHHHHHHc-----CCeeeeeccCCCCcccHHHHHHHHHH-cCCCEEEEec
Confidence 467888876443 221 2234566777777 99999888888766677777777665 5899998765
No 370
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=24.05 E-value=2.5e+02 Score=29.25 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=35.6
Q ss_pred HHHHHHHHccccccCCcEEEEEEEcCCC--HHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011289 312 PRAVSVVNSSSEKLGGAKVVATDVVPDD--VGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 312 ~~l~~~l~~~~~~~~G~~v~~~~~v~Dd--~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
..+.+.|++. |+++..+.-+..+ .+.+.+.++.+.. .++|.||-.||=++-
T Consensus 41 ~~v~~~L~~~-----gi~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGGGS~~ 93 (375)
T cd08194 41 DKLTDSLKKE-----GIESAIFDDVVSEPTDESVEEGVKLAKE-GGCDVIIALGGGSPI 93 (375)
T ss_pred HHHHHHHHHC-----CCeEEEECCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCCchHH
Confidence 4577788887 8877655444434 5567777777654 689999999986543
No 371
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=24.04 E-value=1.4e+02 Score=30.09 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHhCCCeEEEE--EeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHh
Q 011289 36 SNRAMLLAAAMQQHCKLIDL--GIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQK 100 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~--~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~ 100 (489)
.+...|...++++|.....+ -..+|..+++..+++-..+.++|.++ +||++.| ++++.++.+
T Consensus 45 G~~~~I~~~~~~~~l~~~~ieIi~~~~~~~s~~~a~~lv~~G~aD~~v-sg~~~T~--a~l~~~l~~ 108 (294)
T TIGR02706 45 GDEEKINEIAKKIGMNLDDVEIVNAPSPKKAALLAVRLVSTGKADMLM-KGLVDTA--TFLRSVLNK 108 (294)
T ss_pred CCHHHHHHHHHHcCCCccCcEEECCCCcHHHHHHHHHHHHCCCCCEEE-eCCcCHH--HHHHHHhhh
Confidence 34456777777776543333 34467778887777755555699998 7887643 788777765
No 372
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=24.01 E-value=3.3e+02 Score=21.75 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=21.9
Q ss_pred CCcEEEEEEEc---CCCHHHHHHHHHHhhhcCCCcEEE
Q 011289 326 GGAKVVATDVV---PDDVGKIKEVLRRWSDIDKMDLIL 360 (489)
Q Consensus 326 ~G~~v~~~~~v---~Dd~~~I~~~l~~~~~~~~~DlVI 360 (489)
+|+++.+..+| .||+++..+.+.+...+.++|.||
T Consensus 10 ~G~ei~yl~iv~~~~~d~d~Al~eM~e~A~~lGAnAVV 47 (74)
T TIGR03884 10 PGLQLYYLGIVSTESDNVDEIVENLREKVKAKGGMGLI 47 (74)
T ss_pred CCeEEEEEEEEEEecCCHHHHHHHHHHHHHHcCCCEEE
Confidence 37777655544 577776555444444446888887
No 373
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=23.91 E-value=1.7e+02 Score=30.44 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=30.7
Q ss_pred CCcEEEEeCCCCCCCCCChHHHHHHhhccccccHHHHHHhcccccCCCccccccceeEECCEEEEEcCCCHHHHHHHHHH
Q 011289 355 KMDLILTLGGTGFTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECMEA 434 (489)
Q Consensus 355 ~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~g~~~~~~v~~LPG~P~a~~~~~~~ 434 (489)
+.|.||.+||+|-. +++ .+.+.+.++ + -.+|..+|| ..+++.+.+-
T Consensus 293 ~pD~IV~gGGI~e~-~~l-~~~I~~~l~-----------~--------------------~a~v~~~pg-~~e~~ala~g 338 (351)
T TIGR02707 293 KVDAIVLTGGLAYS-KYF-VSEIIKRVS-----------F--------------------IAPVLVYPG-EDEMEALAEG 338 (351)
T ss_pred CCCEEEEcchhhcC-HHH-HHHHHHHHH-----------h--------------------hCCEEEeCC-cHHHHHHHHh
Confidence 58999999999853 222 333333221 1 136888899 7777776665
Q ss_pred HHH
Q 011289 435 LLP 437 (489)
Q Consensus 435 ilp 437 (489)
.+.
T Consensus 339 a~r 341 (351)
T TIGR02707 339 ALR 341 (351)
T ss_pred HHH
Confidence 443
No 374
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=23.91 E-value=6.5e+02 Score=24.10 Aligned_cols=115 Identities=20% Similarity=0.257 Sum_probs=59.8
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEc-------------CCCHHHHHHHHHHhhhcCCC
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVV-------------PDDVGKIKEVLRRWSDIDKM 356 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v-------------~Dd~~~I~~~l~~~~~~~~~ 356 (489)
+|++||-. +|+. |..+.+...+. |++|+.+.-= .-|.-+... +...+. ++
T Consensus 1 mKIaiIgA-----sG~~----Gs~i~~EA~~R-----GHeVTAivRn~~K~~~~~~~~i~q~Difd~~~-~a~~l~--g~ 63 (211)
T COG2910 1 MKIAIIGA-----SGKA----GSRILKEALKR-----GHEVTAIVRNASKLAARQGVTILQKDIFDLTS-LASDLA--GH 63 (211)
T ss_pred CeEEEEec-----Cchh----HHHHHHHHHhC-----CCeeEEEEeChHhccccccceeecccccChhh-hHhhhc--CC
Confidence 57888853 2222 34555555566 8887765422 222222222 234444 89
Q ss_pred cEEEEeCCCC-CCCCCChHHHHHHhhccccccHHHHHHhcccccCCCccccccceeE---ECCEEEEEcCCCHHHHHHHH
Q 011289 357 DLILTLGGTG-FTPRDVTPEATKELIERETPGLLYVMMQESLKVTPFAMLSRSAAGI---RGSTLIINMPGNPNAVAECM 432 (489)
Q Consensus 357 DlVIttGG~G-~t~~D~T~eav~~~~~~~l~g~~e~~~~~~~~~~p~a~l~r~~~g~---~~~~~v~~LPG~P~a~~~~~ 432 (489)
|+||.+=|-+ ++.+-...++.+.+.+. +...+. .+.+-.+.+|. -.++.++-.|.+|.+.+.-.
T Consensus 64 DaVIsA~~~~~~~~~~~~~k~~~~li~~--------l~~agv----~RllVVGGAGSL~id~g~rLvD~p~fP~ey~~~A 131 (211)
T COG2910 64 DAVISAFGAGASDNDELHSKSIEALIEA--------LKGAGV----PRLLVVGGAGSLEIDEGTRLVDTPDFPAEYKPEA 131 (211)
T ss_pred ceEEEeccCCCCChhHHHHHHHHHHHHH--------HhhcCC----eeEEEEcCccceEEcCCceeecCCCCchhHHHHH
Confidence 9999876666 44443334443333321 111111 11222233443 24689999999999988744
Q ss_pred H
Q 011289 433 E 433 (489)
Q Consensus 433 ~ 433 (489)
.
T Consensus 132 ~ 132 (211)
T COG2910 132 L 132 (211)
T ss_pred H
Confidence 4
No 375
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=23.86 E-value=3.5e+02 Score=22.73 Aligned_cols=66 Identities=21% Similarity=0.346 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCeEEEEEee-cCCHHHHHHHHHHHHhcCC-CEEEEeCCCcCCCCCchHHHHHhcC-CeEEe
Q 011289 39 AMLLAAAMQQHCKLIDLGIV-RDDEEELEKTLDNAFSAGI-DILLTSGGVSMGDKDFVKPLLQKKG-TIYFN 107 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v-~Dd~~~i~~~l~~~~~~~~-DlvittGG~s~G~~D~~~~~l~~~G-~~~f~ 107 (489)
.-+...+.+...+++.+... .+....+.+.++...+... |+.|.-||.-... -++.++++| ...|+
T Consensus 40 ~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~---~~~~~~~~G~D~~~~ 108 (119)
T cd02067 40 EEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTR---DFKFLKEIGVDAYFG 108 (119)
T ss_pred HHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCCh---hHHHHHHcCCeEEEC
Confidence 35556677788888888776 6666666666666554445 8999999976554 235677777 44443
No 376
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=23.78 E-value=2.9e+02 Score=27.52 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=27.7
Q ss_pred HHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC-CCCCCCCChH
Q 011289 316 SVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG-TGFTPRDVTP 374 (489)
Q Consensus 316 ~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG-~G~t~~D~T~ 374 (489)
+.+++. |+.+.-+.+- .+.+.+. ..++ .+|-||.+|| ......+...
T Consensus 27 ~~l~~a-----G~~vvpi~~~-~~~~~l~----~~l~--~~dG~l~~Gg~~~~~~~~~~~ 74 (273)
T cd01747 27 KFLESA-----GARVVPIWIN-ESEEYYD----KLFK--SINGILFPGGAVDIDTSGYAR 74 (273)
T ss_pred HHHHHC-----CCeEEEEEeC-CcHHHHH----HHHh--hCCEEEECCCCCcCCccccch
Confidence 456666 8887766643 2344444 4444 6888888887 4554344444
No 377
>PLN02551 aspartokinase
Probab=23.77 E-value=2.5e+02 Score=30.90 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhCCCeEEEEE-----eecCCH-----------HHHHHHHHHHHhcCCCEEEEeCCCcCC-C---------
Q 011289 37 NRAMLLAAAMQQHCKLIDLG-----IVRDDE-----------EELEKTLDNAFSAGIDILLTSGGVSMG-D--------- 90 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~-----~v~Dd~-----------~~i~~~l~~~~~~~~DlvittGG~s~G-~--------- 90 (489)
++.+++++|++.|.....+. ++.|+. +.+++.+...+..+.+++|++|=.|.+ .
T Consensus 176 Sa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGR 255 (521)
T PLN02551 176 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGR 255 (521)
T ss_pred HHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEEecCC
Confidence 66788999999999887765 444441 222333332222235899999987765 3
Q ss_pred --CCchHHHHHh-cC
Q 011289 91 --KDFVKPLLQK-KG 102 (489)
Q Consensus 91 --~D~~~~~l~~-~G 102 (489)
-||+..++.. ++
T Consensus 256 GGSD~sA~~la~~L~ 270 (521)
T PLN02551 256 GGSDLTATTIGKALG 270 (521)
T ss_pred ChHHHHHHHHHHHcC
Confidence 3888888876 45
No 378
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=23.77 E-value=1.3e+02 Score=25.18 Aligned_cols=40 Identities=13% Similarity=0.343 Sum_probs=30.3
Q ss_pred HHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEe
Q 011289 314 AVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTL 362 (489)
Q Consensus 314 l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVItt 362 (489)
-+++|++. |+.+..+..+.++...|.+.+++ .++|+||.+
T Consensus 35 T~~~l~~~-----gi~~~~v~~~~~~~~~i~~~i~~----~~id~vIn~ 74 (110)
T cd01424 35 TAKYLQEA-----GIPVEVVNKVSEGRPNIVDLIKN----GEIQLVINT 74 (110)
T ss_pred HHHHHHHc-----CCeEEEEeecCCCchhHHHHHHc----CCeEEEEEC
Confidence 34567777 88888787777777778887764 489999986
No 379
>COG2229 Predicted GTPase [General function prediction only]
Probab=23.77 E-value=1.1e+02 Score=28.85 Aligned_cols=59 Identities=24% Similarity=0.278 Sum_probs=39.1
Q ss_pred EEEEeCCCcCCCCCchHHHHHhcC-C-------eEE-----eeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChH
Q 011289 79 ILLTSGGVSMGDKDFVKPLLQKKG-T-------IYF-----NKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPV 145 (489)
Q Consensus 79 lvittGG~s~G~~D~~~~~l~~~G-~-------~~f-----~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~ 145 (489)
=|+.+|..+.|..=+++...++.. . .-. .-|+|.+|+-..-.. .+..+|+.||.+.
T Consensus 12 KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-----------~~v~LfgtPGq~R 80 (187)
T COG2229 12 KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-----------TGVHLFGTPGQER 80 (187)
T ss_pred eEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-----------ceEEEecCCCcHH
Confidence 377889999999999988887753 1 111 236666666322211 2478999999998
Q ss_pred HHH
Q 011289 146 SCI 148 (489)
Q Consensus 146 aa~ 148 (489)
.=+
T Consensus 81 F~f 83 (187)
T COG2229 81 FKF 83 (187)
T ss_pred HHH
Confidence 544
No 380
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=23.53 E-value=2.7e+02 Score=31.17 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=65.3
Q ss_pred eCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeec-----------CCHHHHHHHHHHHHh-
Q 011289 7 RTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVR-----------DDEEELEKTLDNAFS- 74 (489)
Q Consensus 7 r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~-----------Dd~~~i~~~l~~~~~- 74 (489)
.||.|+|+.|.+|+.+-.. =.+.-.-.++.-+++.|+.+..+.+.. -.+|.|...++..+.
T Consensus 46 ~KP~IgI~ns~se~~Pch~-------hl~~la~~vk~gI~~aGG~p~ef~ti~v~d~~~~~~~l~sRelIAd~iE~~~~a 118 (596)
T PRK13017 46 GKPIIGIAQTGSDLSPCNR-------HHLELAERVKEGIRDAGGIPMEFPVHPIQETGKRPTAALDRNLAYLGLVEILYG 118 (596)
T ss_pred CCCEEEEEecccCCcCchh-------hHHHHHHHHHHHHHHcCCeeEecccccccccCCCcccccCHHHHHHHHHHHHhc
Confidence 6999999999999984332 134445566667778888777765432 246778888888765
Q ss_pred cCCCEEEEeCCCcCCCCCchHH-H---HHhcC--CeEEeeeeecCCC
Q 011289 75 AGIDILLTSGGVSMGDKDFVKP-L---LQKKG--TIYFNKVCMKPGK 115 (489)
Q Consensus 75 ~~~DlvittGG~s~G~~D~~~~-~---l~~~G--~~~f~~v~~kPGk 115 (489)
...|-+|..+|- |-+.. . ..++. .++..+=.|.||.
T Consensus 119 ~~~Dg~V~i~gC-----DK~~PG~lMaaarlniP~i~v~GG~m~~G~ 160 (596)
T PRK13017 119 YPLDGVVLTTGC-----DKTTPACLMAAATVDLPAIVLSGGPMLDGW 160 (596)
T ss_pred CCcceEEEeccC-----CCccHHHHHHHHhcCCCEEEEeCCCcCCCC
Confidence 357999988874 43322 2 23344 4777777888884
No 381
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=23.52 E-value=4.3e+02 Score=25.03 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=33.2
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
-+...+++.|+.+.... ..+|.+.-.+.++.++.+++|.||..+
T Consensus 20 g~~~~a~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~vdgii~~~ 63 (268)
T cd06270 20 GVESVARKAGKHLIITA-GHHSAEKEREAIEFLLERRCDALILHS 63 (268)
T ss_pred HHHHHHHHCCCEEEEEe-CCCchHHHHHHHHHHHHcCCCEEEEec
Confidence 34556888999987543 466777777888887777799999986
No 382
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=23.42 E-value=1.1e+02 Score=31.13 Aligned_cols=38 Identities=18% Similarity=0.451 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCC-CEEEEeCCCcCCCCCchHHHHHhcCCeEEee
Q 011289 65 LEKTLDNAFSAGI-DILLTSGGVSMGDKDFVKPLLQKKGTIYFNK 108 (489)
Q Consensus 65 i~~~l~~~~~~~~-DlvittGG~s~G~~D~~~~~l~~~G~~~f~~ 108 (489)
+++.++.+++++. |+||||||. +.++.++.+|..+|-|
T Consensus 70 lR~iia~LIr~~~idvvVTTgg~------l~hDi~~~lg~~~~~G 108 (318)
T COG1899 70 LREIIADLIRNGLIDVVVTTGGN------LDHDIIKALGGPHYCG 108 (318)
T ss_pred HHHHHHHHHHcCCeEEEEecCCc------hhHHHHHHcCCCeecc
No 383
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=23.32 E-value=2.1e+02 Score=29.13 Aligned_cols=46 Identities=4% Similarity=0.036 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
..+.+.+++.|++++.....+-...++...+.++.+.++|+|+..+
T Consensus 152 ~~~~~~~~~~G~~vv~~~~~~~~~~D~s~~v~~l~~~~pDav~~~~ 197 (359)
T TIGR03407 152 KIIKAYLKSLGGTVVGEDYTPLGHTDFQTIINKIKAFKPDVVFNTL 197 (359)
T ss_pred HHHHHHHHHcCCEEEeeEEecCChHhHHHHHHHHHHhCCCEEEEec
Confidence 3467788899999888777776666777777776665799988643
No 384
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=23.32 E-value=1.5e+02 Score=30.39 Aligned_cols=51 Identities=12% Similarity=0.170 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhCCCeEEEEEee-c---CCHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIV-R---DDEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v-~---Dd~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
....+...|++.|.++..+..+ + -+.+.+.+.++.+.+ ++|+||-.||=|+
T Consensus 38 ~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~ 92 (348)
T cd08175 38 AGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTI 92 (348)
T ss_pred HHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHH
Confidence 3467788899999876544332 2 345667777766655 6999998888665
No 385
>PRK10646 ADP-binding protein; Provisional
Probab=23.22 E-value=62 Score=29.53 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC
Q 011289 60 DDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG 102 (489)
Q Consensus 60 Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G 102 (489)
++-.++.+.|.+.+. ..|+|+..|-.|.|+-=|++..++.+|
T Consensus 12 ~~t~~l~~~la~~l~-~g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 12 QATLDLGARVAKACD-GATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred HHHHHHHHHHHHhCC-CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 334457777877776 479999999999999999999999998
No 386
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=23.18 E-value=1.6e+02 Score=29.05 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=39.3
Q ss_pred cChHHHHHHHHHhCCCeEEEEE--eecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC
Q 011289 35 DSNRAMLLAAAMQQHCKLIDLG--IVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG 102 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~--~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G 102 (489)
+.-+..+...|++.|+++..+. ...-|.+.+.+...++...++|+||--||=. --|+++-+-.+++
T Consensus 32 ~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~--i~D~~K~~A~~~~ 99 (250)
T PF13685_consen 32 KAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGT--IIDIAKYAAFELG 99 (250)
T ss_dssp HHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcH--HHHHHHHHHHhcC
Confidence 3344567778999999988554 2234566666666555334689999877632 2677777777776
No 387
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=23.15 E-value=1.1e+02 Score=27.06 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCC----CCCchHHHHHhcC
Q 011289 63 EELEKTLDNAFSAGIDILLTSGGVSMG----DKDFVKPLLQKKG 102 (489)
Q Consensus 63 ~~i~~~l~~~~~~~~DlvittGG~s~G----~~D~~~~~l~~~G 102 (489)
+.+..+++-..+..+..||+|||.+.+ +.+.+++.+.+.|
T Consensus 21 ~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~g 64 (150)
T cd06259 21 ERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELG 64 (150)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcC
Confidence 445555554444347999999999765 5566666666665
No 388
>PF08186 Wound_ind: Wound-inducible basic protein family; InterPro: IPR012643 This family consists of the wound-inducible basic proteins from plants. The metabolic activities of plants are dramatically altered upon mechanical injury or pathogen attack. A large number of proteins accumulates at wound or infection sites, such as the wound-inducible basic proteins. These proteins are small, 47 amino acids in length, has no signal peptides and are hydrophilic and basic [].
Probab=23.10 E-value=60 Score=23.10 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.1
Q ss_pred EEcChHHHHHHHHHhCCC
Q 011289 33 IRDSNRAMLLAAAMQQHC 50 (489)
Q Consensus 33 i~dsn~~~l~a~l~~~G~ 50 (489)
|||.|+.+++++|+.-|.
T Consensus 2 iyd~~s~lfrsfl~~~~~ 19 (46)
T PF08186_consen 2 IYDVNSHLFRSFLQKSGA 19 (46)
T ss_pred ceecccHHHHHHHHhccc
Confidence 899999999999976543
No 389
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.05 E-value=1.7e+02 Score=26.08 Aligned_cols=52 Identities=21% Similarity=0.155 Sum_probs=36.3
Q ss_pred CccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 305 AGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 305 ~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
...|..-..++..|+++ |++|...++----.+-++++.+ .++|+|-.|.=+|
T Consensus 12 D~HdiGk~iv~~~l~~~-----GfeVi~LG~~v~~e~~v~aa~~-----~~adiVglS~l~~ 63 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNA-----GFNVVNLGVLSPQEEFIKAAIE-----TKADAILVSSLYG 63 (134)
T ss_pred ChhhHhHHHHHHHHHHC-----CCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEecccc
Confidence 45566667788899999 9999998875544333443333 3799999887555
No 390
>PRK10481 hypothetical protein; Provisional
Probab=22.93 E-value=3.6e+02 Score=26.21 Aligned_cols=77 Identities=9% Similarity=0.113 Sum_probs=0.0
Q ss_pred EEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcC--CCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011289 291 SVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVP--DDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 291 ~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~--Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
+++|++-..+-. ....+..... |+++.....-| .+.+.+.++.+++.+ .++|+|+. +++|.+
T Consensus 131 riGVitP~~~qi---------~~~~~kw~~~-----G~~v~~~~aspy~~~~~~l~~aa~~L~~-~gaD~Ivl-~C~G~~ 194 (224)
T PRK10481 131 QVGVIVPVEEQL---------AQQAQKWQVL-----QKPPVFALASPYHGSEEELIDAGKELLD-QGADVIVL-DCLGYH 194 (224)
T ss_pred eEEEEEeCHHHH---------HHHHHHHHhc-----CCceeEeecCCCCCCHHHHHHHHHHhhc-CCCCEEEE-eCCCcC
Q ss_pred CCCChHHHHHHhhcccc
Q 011289 369 PRDVTPEATKELIERET 385 (489)
Q Consensus 369 ~~D~T~eav~~~~~~~l 385 (489)
. .+ .+.+++..++++
T Consensus 195 ~-~~-~~~le~~lg~PV 209 (224)
T PRK10481 195 Q-RH-RDLLQKALDVPV 209 (224)
T ss_pred H-HH-HHHHHHHHCcCE
No 391
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=22.86 E-value=1.6e+02 Score=28.61 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=45.2
Q ss_pred cCCCEEEEeCCCcCCCCCchHHHHHhcC--C-eEEeeeeecCCCcee------eEEEccCCCCccccccEEE-EEcCCCh
Q 011289 75 AGIDILLTSGGVSMGDKDFVKPLLQKKG--T-IYFNKVCMKPGKPLT------FAEINIKPTDDVMVNKILA-FGLPGNP 144 (489)
Q Consensus 75 ~~~DlvittGG~s~G~~D~~~~~l~~~G--~-~~f~~v~~kPGkp~~------~a~~~~~~~~~~~~~~~~v-~~LPGnP 144 (489)
+.||++|++|-+..--.+.+..+.+++- + ++--|----=|.+.. ++-++ +-.+| +-+||.|
T Consensus 70 RhADvliVtG~VT~km~~~L~rlyeqmPePK~VIA~GaCA~sGGif~~dsy~~v~gvd---------~vIPVDv~IPGCP 140 (225)
T CHL00023 70 RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVD---------KLIPVDVYLPGCP 140 (225)
T ss_pred ccceEEEEecCCccccHHHHHHHHHhcCCCCeEEEEccccccCCcccCCCcccccCcc---------ccceeeEEecCCC
Confidence 3599999999998877777777777664 2 221221111122111 11111 01234 7899999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 011289 145 VSCIVCFHLYIVPAIRHLSG 164 (489)
Q Consensus 145 ~aa~~~~~~~v~P~L~~l~G 164 (489)
-.-...++.+ .-+..++..
T Consensus 141 P~PeaIi~~l-~~L~~ki~~ 159 (225)
T CHL00023 141 PKPEAVIDAI-TKLRKKISR 159 (225)
T ss_pred CCHHHHHHHH-HHHHHHHhc
Confidence 8888777665 444555543
No 392
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=22.85 E-value=1.9e+02 Score=29.76 Aligned_cols=49 Identities=8% Similarity=0.014 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhCCCeEEEEEeecCCHHHHH---HHHHHHHhcCCCEEEEeCCC
Q 011289 37 NRAMLLAAAMQQHCKLIDLGIVRDDEEELE---KTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~---~~l~~~~~~~~DlvittGG~ 86 (489)
-|..++..|+.+|+++..+..-++...... ..+.++++ ++|+|++.=-.
T Consensus 157 IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~-~aDiVil~lP~ 208 (330)
T PRK12480 157 IGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIK-DADIISLHVPA 208 (330)
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHh-cCCEEEEeCCC
Confidence 467788889999999988876554322211 24667776 59999977643
No 393
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=22.83 E-value=1e+02 Score=32.74 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=41.9
Q ss_pred eeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEE-eC
Q 011289 6 YRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLT-SG 84 (489)
Q Consensus 6 ~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlvit-tG 84 (489)
+.+.+||||+|-+=-+ | ---=|..+.+-.|+.+ ++-+++.++.+++.... ++|+|+. |-
T Consensus 231 ~~~~kVaiITtDtYRI---------G-----A~EQLk~Ya~im~vp~----~vv~~~~el~~ai~~l~--~~d~ILVDTa 290 (407)
T COG1419 231 KKKKKVAIITTDTYRI---------G-----AVEQLKTYADIMGVPL----EVVYSPKELAEAIEALR--DCDVILVDTA 290 (407)
T ss_pred ccCcceEEEEeccchh---------h-----HHHHHHHHHHHhCCce----EEecCHHHHHHHHHHhh--cCCEEEEeCC
Confidence 6788999999843211 1 0122344445556655 56788999999998775 4899883 44
Q ss_pred CCcCCCCCc
Q 011289 85 GVSMGDKDF 93 (489)
Q Consensus 85 G~s~G~~D~ 93 (489)
|- +.+|.
T Consensus 291 Gr--s~~D~ 297 (407)
T COG1419 291 GR--SQYDK 297 (407)
T ss_pred CC--CccCH
Confidence 44 44554
No 394
>PRK04155 chaperone protein HchA; Provisional
Probab=22.77 E-value=1e+02 Score=31.08 Aligned_cols=47 Identities=4% Similarity=0.047 Sum_probs=25.2
Q ss_pred CeEEEEecCCcCcCC--CCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEe
Q 011289 9 PTIAVLSTGDELVEP--TTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGI 57 (489)
Q Consensus 9 prV~iistGdEl~~~--g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~ 57 (489)
+||.||.|...-+.. |.. ...| ..+.--..-...|++.|++|....+
T Consensus 50 kkiL~v~t~~~~~~~~~g~~-~~tG-~~~~E~~~P~~~L~~AG~eVdiAS~ 98 (287)
T PRK04155 50 KKILMIAADERYLPMDNGKL-FSTG-NHPVETLLPMYHLHKAGFEFDVATL 98 (287)
T ss_pred CeEEEEEcCcccccCCCCCc-CCCC-ccHHHHHHHHHHHHHCCCEEEEEec
Confidence 378888886543321 110 0111 1222233345568899999888764
No 395
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=22.69 E-value=1.3e+02 Score=28.36 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=7.8
Q ss_pred CeEEEEecCC
Q 011289 9 PTIAVLSTGD 18 (489)
Q Consensus 9 prV~iistGd 18 (489)
.||+|+++|+
T Consensus 1 ~riail~sg~ 10 (190)
T TIGR00639 1 KRIVVLISGN 10 (190)
T ss_pred CeEEEEEcCC
Confidence 4799999964
No 396
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=22.69 E-value=2.9e+02 Score=22.04 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=31.2
Q ss_pred cChHHHHHHHHHhC------CCeEEEEEeecC---CHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 35 DSNRAMLLAAAMQQ------HCKLIDLGIVRD---DEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 35 dsn~~~l~a~l~~~------G~~~~~~~~v~D---d~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
..|-..+.++++.. +=.+..++...| ........+.+.+.+-+|.|+++|.-.
T Consensus 21 ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 82 (91)
T PF02875_consen 21 AHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGDNP 82 (91)
T ss_dssp --SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETSBT
T ss_pred CCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCCCC
Confidence 34555565555543 223344555666 666666777777764478888888653
No 397
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=22.66 E-value=3.4e+02 Score=27.77 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhCCC----eEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 37 NRAMLLAAAMQQHC----KLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 37 n~~~l~a~l~~~G~----~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
....+...+++.|. ++.....++.+...+...|++....++|+||..+.
T Consensus 170 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vIvl~~~ 222 (377)
T cd06379 170 AQKRFETLLEEREIEFKIKVEKVVEFEPGEKNVTSLLQEAKELTSRVILLSAS 222 (377)
T ss_pred HHHHHHHHHHhcCCccceeeeEEEecCCchhhHHHHHHHHhhcCCeEEEEEcC
Confidence 34567788889998 77766666555566777777766556999998764
No 398
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=22.57 E-value=1.6e+02 Score=27.94 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=42.7
Q ss_pred cCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCC-CCCCChHHHHHHhh
Q 011289 307 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGF-TPRDVTPEATKELI 381 (489)
Q Consensus 307 ~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~-t~~D~T~eav~~~~ 381 (489)
.|+..+.+++.+.+. |.++ .++.+|...+. .++. .++|.||.|=|=|- .+.....++++++.
T Consensus 10 yDSFtyNLv~yl~~l-----g~~v---~V~rnd~~~~~-~~~~----~~pd~iviSPGPG~P~d~G~~~~~i~~~~ 72 (191)
T COG0512 10 YDSFTYNLVQYLREL-----GAEV---TVVRNDDISLE-LIEA----LKPDAIVISPGPGTPKDAGISLELIRRFA 72 (191)
T ss_pred ccchHHHHHHHHHHc-----CCce---EEEECCccCHH-HHhh----cCCCEEEEcCCCCChHHcchHHHHHHHhc
Confidence 589999999999999 8544 45555522222 2332 26899999877764 34455899999984
No 399
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.56 E-value=1.6e+02 Score=29.59 Aligned_cols=11 Identities=27% Similarity=0.247 Sum_probs=4.5
Q ss_pred HHHhCCCeEEE
Q 011289 44 AAMQQHCKLID 54 (489)
Q Consensus 44 ~l~~~G~~~~~ 54 (489)
.+++.|++++.
T Consensus 160 ~~~~~g~~v~~ 170 (344)
T cd06348 160 ALRDQGLNLVT 170 (344)
T ss_pred HHHHcCCEEEE
Confidence 33344444443
No 400
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=22.48 E-value=2.1e+02 Score=27.24 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=34.2
Q ss_pred HHHHHHHh-CCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 40 MLLAAAMQ-QHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 40 ~l~a~l~~-~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
-+...+++ .|+++.... ...|++...+.++++++++.|-+|+.+..
T Consensus 20 gi~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 66 (272)
T cd06301 20 AMKEHAKVLGGVELQFED-AKNDVATQLSQVENFIAQGVDAIIVVPVD 66 (272)
T ss_pred HHHHHHHHcCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 35556777 898887653 35678888888888877679999987754
No 401
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=22.47 E-value=2.4e+02 Score=28.77 Aligned_cols=70 Identities=21% Similarity=0.320 Sum_probs=53.1
Q ss_pred CCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCH-------HHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHH
Q 011289 304 GAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDV-------GKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEA 376 (489)
Q Consensus 304 G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~-------~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~ea 376 (489)
+.+.|.-+.|..+.++++ |+..+.+-.+.-|+ .+-.+.+++.++ .+|+=|..||.|--.+|. ++
T Consensus 146 ~dVmedP~eWArk~Vk~f-----gadmvTiHlIsTdPki~D~p~~EAak~lEdvLq--AVdvPiiiGGSGnpeKDp--eV 216 (403)
T COG2069 146 DDVMEDPGEWARKCVKKF-----GADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQ--AVDVPIIIGGSGNPEKDP--EV 216 (403)
T ss_pred HHHhhCHHHHHHHHHHHh-----CCceEEEEeecCCccccCCCHHHHHHHHHHHHH--hcCcCEEecCCCCCccCH--HH
Confidence 345677788989999999 99888887776553 456777888876 799999999999888774 55
Q ss_pred HHHhhc
Q 011289 377 TKELIE 382 (489)
Q Consensus 377 v~~~~~ 382 (489)
++++.+
T Consensus 217 lekaAE 222 (403)
T COG2069 217 LEKAAE 222 (403)
T ss_pred HHHHHH
Confidence 555443
No 402
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=22.44 E-value=5.9e+02 Score=27.30 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=34.2
Q ss_pred ceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 289 EFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 289 ~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
+++|+|+. |+..+ .+. +--.+.|++. |+++.......|+. +. ++|.|+.-||-.
T Consensus 244 ~~~Iava~--d~afn-Fy~----~~~~~~L~~~-----g~~~~~~~~~~d~~----------l~--~~d~l~ipGG~~ 297 (449)
T TIGR00379 244 YVRIAVAQ--DQAFN-FYY----QDNLDALTHN-----AAELVPFSPLEDTE----------LP--DVDAVYIGGGFP 297 (449)
T ss_pred CcEEEEEe--chhhc-eeH----HHHHHHHHHC-----CCEEEEECCccCCC----------CC--CCCEEEeCCcHH
Confidence 47888776 45432 111 1223456667 99999877765652 23 689999999874
No 403
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=22.39 E-value=2e+02 Score=31.67 Aligned_cols=32 Identities=31% Similarity=0.221 Sum_probs=24.2
Q ss_pred CCcEEEEeCCCCCCCCCChHHHHHHhhccccc
Q 011289 355 KMDLILTLGGTGFTPRDVTPEATKELIERETP 386 (489)
Q Consensus 355 ~~DlVIttGG~G~t~~D~T~eav~~~~~~~l~ 386 (489)
++|-||.+||-|.-..+-..+++..+.+..+|
T Consensus 343 ~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP 374 (525)
T TIGR00337 343 GVDGILVPGGFGERGVEGKILAIKYARENNIP 374 (525)
T ss_pred CCCEEEeCCCCCChhhcChHHHHHHHHHcCCC
Confidence 79999999988765556666777777755555
No 404
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=22.39 E-value=1.6e+02 Score=28.30 Aligned_cols=66 Identities=23% Similarity=0.250 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHhCCCeEEEE-----EeecCC-------HHHHHHHHHHHHhcC-CCEEEEeCCCcCC-----------CC
Q 011289 36 SNRAMLLAAAMQQHCKLIDL-----GIVRDD-------EEELEKTLDNAFSAG-IDILLTSGGVSMG-----------DK 91 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~-----~~v~Dd-------~~~i~~~l~~~~~~~-~DlvittGG~s~G-----------~~ 91 (489)
-|..++.+.|++.|.++..+ ..+.++ .+...+.++++++ . ..+.|++|..+.. .-
T Consensus 60 ~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~vpVv~g~i~~~~~g~~~~l~rg~s 138 (227)
T cd04234 60 LSARLLAAALRDRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLA-EIGKVPVVTGFIGRNEDGEITTLGRGGS 138 (227)
T ss_pred HHHHHHHHHHHHCCCCeEEeCHHHCCEEcCCccchhhHHHHHHHHHHHHHh-hCCCEEEecCceecCCCCCEEEeeCCCc
Confidence 46677788999999988743 344333 3445667777775 3 4677887755443 35
Q ss_pred CchHHHHHh-cC
Q 011289 92 DFVKPLLQK-KG 102 (489)
Q Consensus 92 D~~~~~l~~-~G 102 (489)
|++...+.. ++
T Consensus 139 D~~A~~lA~~l~ 150 (227)
T cd04234 139 DYSAAALAAALG 150 (227)
T ss_pred HHHHHHHHHHhC
Confidence 777777765 45
No 405
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=22.37 E-value=97 Score=29.45 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCeEEEEEeecC-CH----HHHHHHHHHHHhcCCCEEEEeC
Q 011289 40 MLLAAAMQQHCKLIDLGIVRD-DE----EELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~D-d~----~~i~~~l~~~~~~~~DlvittG 84 (489)
....++++.|+.+..+..... +. +++.+.|++. ++|++|+.|
T Consensus 42 ~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~---~~D~iv~~~ 88 (200)
T PRK05647 42 YGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAY---QPDLVVLAG 88 (200)
T ss_pred hHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHh---CcCEEEhHH
Confidence 356677888887655433221 12 2344444433 488888866
No 406
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=22.26 E-value=1.9e+02 Score=29.03 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=43.9
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeC
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLG 363 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttG 363 (489)
-++++|...+.- |+. ....+.+.++++ |.++.....++.+..++...+.++.+ .++|+|+++.
T Consensus 137 ~~v~~i~~~~~~--g~~---~~~~~~~~~~~~-----G~~vv~~~~~~~~~~d~~~~v~~l~~-~~pd~V~~~~ 199 (333)
T cd06328 137 KKIATLAQDYAF--GRD---GVAAFKAALEKL-----GAAIVTEEYAPTDTTDFTPYAQRLLD-ALKKVLFVIW 199 (333)
T ss_pred CeEEEEecCccc--cHH---HHHHHHHHHHhC-----CCEEeeeeeCCCCCcchHHHHHHHHh-cCCCEEEEEe
Confidence 378888765542 111 123455677777 99999888887777778888887765 5899998764
No 407
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=22.20 E-value=2.1e+02 Score=27.10 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=46.2
Q ss_pred EEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCCh
Q 011289 294 ILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVT 373 (489)
Q Consensus 294 Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T 373 (489)
|+.||=+=..|...| .+..+++.|... ...|+++. ...+|=+.+...+.+.++++..+.|+||-.|= ..+.+-++
T Consensus 3 ILvTGFgpF~~~~~N-pS~~~v~~L~~~--~~~~~~v~-~~~lPV~~~~~~~~l~~~l~~~~PdlVIhlGv-a~~~~~i~ 77 (202)
T PF01470_consen 3 ILVTGFGPFGGVPVN-PSWELVKRLPGE--LIGGAEVH-TRELPVSYEKAFEALEELLEEHQPDLVIHLGV-AGGRKSIR 77 (202)
T ss_dssp EEEEEE-S-TT-SS--HHHHHHHHHTTS--EETTEEEE-EEEE-SSHHHHHHHHHHHHHHH--SEEEEEEE--TT-SSEE
T ss_pred EEEecccCCCCCCCC-hHHHHHHHcCCC--cCCCceEE-EEEecCchHhHHHHHHHHHHhcCCcEEEEEee-cCCcchhh
Confidence 667777766555433 355667777753 22367654 77889999988888888777668999998773 33544555
Q ss_pred HH
Q 011289 374 PE 375 (489)
Q Consensus 374 ~e 375 (489)
.|
T Consensus 78 lE 79 (202)
T PF01470_consen 78 LE 79 (202)
T ss_dssp EE
T ss_pred HH
Confidence 44
No 408
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=22.17 E-value=3e+02 Score=24.43 Aligned_cols=55 Identities=13% Similarity=0.015 Sum_probs=40.7
Q ss_pred CcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhh
Q 011289 327 GAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELI 381 (489)
Q Consensus 327 G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~ 381 (489)
++++...++-.+..+.+...+.+.+...++|+|+...|+=--.+..+.+.+.+-.
T Consensus 22 ~~~v~N~Gi~G~~~~~~~~~~~~~~~~~~p~~vvi~~G~ND~~~~~~~~~~~~~~ 76 (171)
T cd04502 22 PLPVVNRGFGGSTLADCLHYFDRLVLPYQPRRVVLYAGDNDLASGRTPEEVLRDF 76 (171)
T ss_pred CCceeecCcccchHHHHHHHHHhhhccCCCCEEEEEEecCcccCCCCHHHHHHHH
Confidence 7889999999999998888887776545899999999885443444455444433
No 409
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.16 E-value=4.2e+02 Score=25.00 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=43.9
Q ss_pred HHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhcccc
Q 011289 316 SVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIERET 385 (489)
Q Consensus 316 ~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~~l 385 (489)
+.++++ |+++........|.+.-.+.+++++. .++|.||++. ...+.+.+.+.++.+..+
T Consensus 22 ~~a~~~-----g~~~~~~~~~~~d~~~q~~~i~~~i~-~~~d~Iiv~~----~~~~~~~~~l~~~~~~gI 81 (257)
T PF13407_consen 22 AAAKEL-----GYEVEIVFDAQNDPEEQIEQIEQAIS-QGVDGIIVSP----VDPDSLAPFLEKAKAAGI 81 (257)
T ss_dssp HHHHHH-----TCEEEEEEESTTTHHHHHHHHHHHHH-TTESEEEEES----SSTTTTHHHHHHHHHTTS
T ss_pred HHHHHc-----CCEEEEeCCCCCCHHHHHHHHHHHHH-hcCCEEEecC----CCHHHHHHHHHHHhhcCc
Confidence 445555 88888766777777888899999987 6899999754 444566677777765543
No 410
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=22.16 E-value=1.5e+02 Score=28.29 Aligned_cols=60 Identities=18% Similarity=0.113 Sum_probs=33.9
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC
Q 011289 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 364 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG 364 (489)
+.+++++|.+.... .+....+..+.+++. .|+++..+.... .+.+.+.+. ++|+|+.+||
T Consensus 30 ~~~~i~~IptAs~~-----~~~~~~~~~~a~~~l----~G~~~~~~~~~~------~~~~~~~l~--~ad~I~l~GG 89 (212)
T cd03146 30 ARPKVLFVPTASGD-----RDEYTARFYAAFESL----RGVEVSHLHLFD------TEDPLDALL--EADVIYVGGG 89 (212)
T ss_pred CCCeEEEECCCCCC-----HHHHHHHHHHHHhhc----cCcEEEEEeccC------cccHHHHHh--cCCEEEECCc
Confidence 56899999886552 122223344444433 166666555544 122223333 6899999995
No 411
>PRK03094 hypothetical protein; Provisional
Probab=22.10 E-value=1.3e+02 Score=24.40 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=26.5
Q ss_pred CchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeC
Q 011289 309 RSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLG 363 (489)
Q Consensus 309 ~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttG 363 (489)
.+-..+.+.|++. |++|..+..--| . +.+|.+++||
T Consensus 8 ~~Ls~i~~~L~~~-----GYeVv~l~~~~~------------~--~~~Da~VitG 43 (80)
T PRK03094 8 QSLTDVQQALKQK-----GYEVVQLRSEQD------------A--QGCDCCVVTG 43 (80)
T ss_pred cCcHHHHHHHHHC-----CCEEEecCcccc------------c--CCcCEEEEeC
Confidence 3445688999999 999987643212 2 3899999999
No 412
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=22.06 E-value=1.9e+02 Score=27.41 Aligned_cols=67 Identities=22% Similarity=0.240 Sum_probs=49.0
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhc
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIE 382 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~ 382 (489)
|+-.+...+.+++. |.++.....-.|+ -+...+|+.+.+ .+++-|+..|++|- .-|++-.-+.-+..
T Consensus 50 DSi~~~~~~~~~~~-----~~~~~~~p~~KD~-TD~e~Al~~~~~-~~~~~i~i~Ga~Gg-R~DH~lani~~l~~ 116 (208)
T cd07995 50 DSISPEVLEYYKSK-----GVEIIHFPDEKDF-TDFEKALKLALE-RGADEIVILGATGG-RLDHTLANLNLLLK 116 (208)
T ss_pred cCCCHHHHHHHHhc-----CCeEEECCCCCCC-CHHHHHHHHHHH-cCCCEEEEEccCCC-cHHHHHHHHHHHHH
Confidence 55556777778777 7666655544444 668889988886 57899999999995 77898877776543
No 413
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=22.05 E-value=2e+02 Score=29.64 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=43.7
Q ss_pred CCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhc-CCCcEEE--EeCCCCCC
Q 011289 303 SGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDI-DKMDLIL--TLGGTGFT 368 (489)
Q Consensus 303 ~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~-~~~DlVI--ttGG~G~t 368 (489)
.|.+.+.+..-+.+.+++. |++|..+ .-..|.++|.++|+++... .+.-+|| |+=|-|..
T Consensus 187 dg~~~~~~~~~~~~k~~a~-----Gw~v~~v-~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~TvkG~G~~ 249 (332)
T PF00456_consen 187 DGPTDIVFSEDIAKKFEAF-----GWNVIEV-CDGHDVEAIYAAIEEAKASKGKPTVIIARTVKGKGVP 249 (332)
T ss_dssp TEEGGGTHHSHHHHHHHHT-----T-EEEEE-EETTBHHHHHHHHHHHHHSTSS-EEEEEEE-TTTTST
T ss_pred CCCcccccchHHHHHHHHh-----hhhhccc-ccCcHHHHHHHHHHHHHhcCCCCceeecceEEecCch
Confidence 4555555556678889999 9999877 6789999999999998653 3677777 78888774
No 414
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=22.02 E-value=1.8e+02 Score=28.61 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=47.1
Q ss_pred eEEEEEEeCCcccCCCcc------------------CCchHHHHHHHHccccccCCcEEEEEE--EcC--CCHHHHHHHH
Q 011289 290 FSVAILTVSDTVASGAGP------------------DRSGPRAVSVVNSSSEKLGGAKVVATD--VVP--DDVGKIKEVL 347 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~------------------D~n~~~l~~~l~~~~~~~~G~~v~~~~--~v~--Dd~~~I~~~l 347 (489)
.+++|++-|-.+.+|.+. --|+..+...|.+. |++..-.. ..| -++....+++
T Consensus 45 ~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvmNal~L~~aL~~~-----~~~~~v~sai~~~~~~e~~~~~~A~ 119 (238)
T COG0528 45 VEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVMNALALQDALERL-----GVDTRVQSAIAMPQVAEPYSRREAI 119 (238)
T ss_pred cEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHHHHHHHHHHHHhc-----CCcceecccccCccccCccCHHHHH
Confidence 467777777766544221 12455666666655 55443333 223 3334445555
Q ss_pred HHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhh
Q 011289 348 RRWSDIDKMDLILTLGGTGFTPRDVTPEATKELI 381 (489)
Q Consensus 348 ~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~ 381 (489)
+. ++ +.++||..||||--- +|.++++.+.
T Consensus 120 ~~-l~--~grVvIf~gGtg~P~--fTTDt~AALr 148 (238)
T COG0528 120 RH-LE--KGRVVIFGGGTGNPG--FTTDTAAALR 148 (238)
T ss_pred HH-HH--cCCEEEEeCCCCCCC--CchHHHHHHH
Confidence 54 33 689999999998644 6666666554
No 415
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=22.00 E-value=1.9e+02 Score=27.78 Aligned_cols=70 Identities=17% Similarity=0.118 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHhCCCeEEEEEee------------cCCHHHHHHHHHHHHhcCCCEEEEeCCC----------cCCCCCc
Q 011289 36 SNRAMLLAAAMQQHCKLIDLGIV------------RDDEEELEKTLDNAFSAGIDILLTSGGV----------SMGDKDF 93 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v------------~Dd~~~i~~~l~~~~~~~~DlvittGG~----------s~G~~D~ 93 (489)
-+..++.++|++.|.....+... .+......+.|++++++ ..+.|++|.. +.+.-|+
T Consensus 76 ~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~l~~-~~ipVv~g~~~~~~~~~~~~~~~~sD~ 154 (248)
T cd02115 76 MSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLEN-GILPILSGFGGTDEKETGTLGRGGSDS 154 (248)
T ss_pred HHHHHHHHHHHhCCCCeEEEchHHcCeEeCCCCCcccceeeCHHHHHHHHhC-CcEEEecCeEeccCCceeeecCCCHHH
Confidence 46677888999999876655322 12222234556666653 6777777765 4566788
Q ss_pred hHHHHHh-cC--CeEE
Q 011289 94 VKPLLQK-KG--TIYF 106 (489)
Q Consensus 94 ~~~~l~~-~G--~~~f 106 (489)
+...+.. ++ +++|
T Consensus 155 ~A~~lA~~l~A~~li~ 170 (248)
T cd02115 155 TAALLAAALKADRLVI 170 (248)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 8888876 56 3554
No 416
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=22.00 E-value=3.4e+02 Score=29.49 Aligned_cols=62 Identities=10% Similarity=0.169 Sum_probs=0.0
Q ss_pred eEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecC--CHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 10 TIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRD--DEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 10 rV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~D--d~~~i~~~l~~~~~~~~DlvittG 84 (489)
+|++|...|+-- ......+...+++.|+.+.....++. +..++...+.+..+.++|+||+.+
T Consensus 189 ~VaiI~~dd~yG-------------~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~klk~~~a~vVvl~~ 252 (510)
T cd06364 189 WVGTIAADDDYG-------------RPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQNSTAKVIVVFS 252 (510)
T ss_pred EEEEEEecCcch-------------HHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEe
No 417
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=21.99 E-value=2.6e+02 Score=26.20 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=30.8
Q ss_pred eEEEEEEe-CCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 290 FSVAILTV-SDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 290 ~~v~Ii~~-GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
|||+|+++ |+. +.....+.+.++.. |+++..+.+ ++.+ .+. ++|.||.+||-+
T Consensus 1 ~~i~vl~~~~~~-------~e~~~~~~~~l~~~-----g~~~~~~~~--~~~~--------~l~--~~d~iii~GG~~ 54 (200)
T PRK13527 1 MKIGVLALQGDV-------EEHIDALKRALDEL-----GIDGEVVEV--RRPG--------DLP--DCDALIIPGGES 54 (200)
T ss_pred CEEEEEEECCcc-------HHHHHHHHHHHHhc-----CCCeEEEEe--CChH--------Hhc--cCCEEEECCCcH
Confidence 47888865 221 11223556777777 876554433 2221 123 699999999854
No 418
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=21.98 E-value=5.1e+02 Score=24.30 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhcCCCcEEEEeCCCCCCC
Q 011289 340 VGKIKEVLRRWSDIDKMDLILTLGGTGFTP 369 (489)
Q Consensus 340 ~~~I~~~l~~~~~~~~~DlVIttGG~G~t~ 369 (489)
..++.+++.++++..+++.|||.||+....
T Consensus 32 ~~e~a~~vld~a~~~gv~~iitLgG~~~~~ 61 (188)
T TIGR00162 32 QYELVNAIIDVAKKYGARMIYTLGGYGVGK 61 (188)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCcCCC
Confidence 446888888888877999999999998863
No 419
>PLN02347 GMP synthetase
Probab=21.90 E-value=3.5e+02 Score=29.94 Aligned_cols=45 Identities=9% Similarity=0.099 Sum_probs=31.0
Q ss_pred cChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 35 DSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
++|...|...+++.|+.+..+..- .+.+++ .+. ++|-||.+||-+
T Consensus 20 ~~~t~~I~r~lrelgv~~~v~p~~-~~~~~i----~~~---~~dgIILsGGP~ 64 (536)
T PLN02347 20 SQYTHLITRRVRELGVYSLLLSGT-ASLDRI----ASL---NPRVVILSGGPH 64 (536)
T ss_pred CcHHHHHHHHHHHCCCeEEEEECC-CCHHHH----hcC---CCCEEEECCCCC
Confidence 578899999999999876543222 234433 221 489999999864
No 420
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.89 E-value=3e+02 Score=27.72 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 38 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
...+...+++.|+++......+=+..++...+.++.+.++|+|+..+.
T Consensus 155 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~ 202 (347)
T cd06335 155 RKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGN 202 (347)
T ss_pred HHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEec
Confidence 356677788889988766655433455666677666657899988763
No 421
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=21.88 E-value=2.7e+02 Score=24.75 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=32.5
Q ss_pred EEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCC
Q 011289 293 AILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGT 365 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~ 365 (489)
.++++||+. |.+..-+.+++.+- +.. .+.+.++.-+.| .+.+.++.+++.. .--+|+.-+|-
T Consensus 30 ~~vs~Gn~~------dv~~~d~l~~~~~D-~~t-~~I~ly~E~~~d-~~~f~~~~~~a~~--~KPVv~lk~Gr 91 (138)
T PF13607_consen 30 YVVSVGNEA------DVDFADLLEYLAED-PDT-RVIVLYLEGIGD-GRRFLEAARRAAR--RKPVVVLKAGR 91 (138)
T ss_dssp EEEE-TT-S------SS-HHHHHHHHCT--SS---EEEEEES--S--HHHHHHHHHHHCC--CS-EEEEE---
T ss_pred EEEEeCccc------cCCHHHHHHHHhcC-CCC-CEEEEEccCCCC-HHHHHHHHHHHhc--CCCEEEEeCCC
Confidence 467888875 55555555655543 112 566777788888 6888888888875 34555555553
No 422
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=21.86 E-value=1.3e+02 Score=30.56 Aligned_cols=39 Identities=28% Similarity=0.546 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEe----CCCcCCCCCchHHHHHhcC
Q 011289 63 EELEKTLDNAFSAGIDILLTS----GGVSMGDKDFVKPLLQKKG 102 (489)
Q Consensus 63 ~~i~~~l~~~~~~~~Dlvitt----GG~s~G~~D~~~~~l~~~G 102 (489)
++..+.+++.++ +||.++.+ ||+|-|--=++.+.+++.+
T Consensus 72 ~e~~~~I~~~le-~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~ 114 (303)
T cd02191 72 EEVQEAIDNIPV-HVDMVFITAGLGGGTGTGGAPVVAEHLKRIG 114 (303)
T ss_pred HHHHHHHHHHHc-CCCEEEEEeccCCccchhHHHHHHHHHHHhC
Confidence 346667777776 59999976 6666665556666666665
No 423
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=21.84 E-value=1.4e+02 Score=30.61 Aligned_cols=52 Identities=17% Similarity=0.069 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhCCCeEEEE--EeecC-CHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Q 011289 37 NRAMLLAAAMQQHCKLIDL--GIVRD-DEEELEKTLDNAFSAGIDILLTSGGVSMG 89 (489)
Q Consensus 37 n~~~l~a~l~~~G~~~~~~--~~v~D-d~~~i~~~l~~~~~~~~DlvittGG~s~G 89 (489)
.+.-+.+.|++.|.++..+ ...++ +.+.+.+.++.+.+ ++|+||-.||=|++
T Consensus 39 ~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGGsv~ 93 (332)
T cd08549 39 AGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSGTII 93 (332)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCcHHH
Confidence 3456777888888765432 22332 56777777777766 69999999886653
No 424
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=21.80 E-value=3.5e+02 Score=25.81 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
.|=..+..+++..|+++... ++ .++ ++ ++|.||.-|
T Consensus 12 GN~~sl~~al~~~g~~v~vv---~~-~~~--------l~-~~d~iIlPG 47 (210)
T CHL00188 12 GNLHSVSRAIQQAGQQPCII---NS-ESE--------LA-QVHALVLPG 47 (210)
T ss_pred ccHHHHHHHHHHcCCcEEEE---cC-HHH--------hh-hCCEEEECC
Confidence 56688899999999988644 33 221 23 489999655
No 425
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=21.80 E-value=2.2e+02 Score=22.62 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMG 89 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G 89 (489)
-.|...+.+.|+.+..+...+-+.....+...+.++ +||+.|..=|.--|
T Consensus 16 ~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~-~cDifI~ilG~rYG 65 (83)
T PF13271_consen 16 DALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVD-ECDIFILILGNRYG 65 (83)
T ss_pred HHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHh-hCCEEEEeeccccC
Confidence 456677788899998888775544444555556666 49999865544444
No 426
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=21.80 E-value=2.9e+02 Score=26.17 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 38 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
...+...+++.|.++......+.+.+.....+.++...+.|+|++.+.
T Consensus 152 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~ 199 (298)
T cd06268 152 AAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAGY 199 (298)
T ss_pred HHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHhcCCCEEEEccc
Confidence 455667788888887766555544345566666655545788887764
No 427
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=21.79 E-value=1.3e+02 Score=29.04 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=22.9
Q ss_pred CeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEe
Q 011289 9 PTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGI 57 (489)
Q Consensus 9 prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~ 57 (489)
.||+|+.+|--..+ | ..+.--..-...|++.|+++.....
T Consensus 2 kkVlills~~~~~d-G--------~e~~E~~~P~~~L~~aG~~V~~aSp 41 (217)
T PRK11780 2 KKIAVILSGCGVYD-G--------SEIHEAVLTLLALDRAGAEAVCFAP 41 (217)
T ss_pred CEEEEEEccCCCCC-C--------EehhHHHHHHHHHHHCCCEEEEEeC
Confidence 47899987422220 1 1123334445668888988887653
No 428
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=21.74 E-value=48 Score=35.40 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGD 90 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~ 90 (489)
..+..|..++.+.|+..-.+.++..+..++.+.|.+. ...|.|+-||++.+|.
T Consensus 158 ~~~~~l~~~l~~aglP~g~v~~v~g~~~~~~~~L~~~--~~i~~V~ftGs~~~g~ 210 (455)
T cd07093 158 LTAWLLAELANEAGLPPGVVNVVHGFGPEAGAALVAH--PDVDLISFTGETATGR 210 (455)
T ss_pred HHHHHHHHHHHhcCCCccceEEEecCchHHHHHHhcC--CCccEEEEECCHHHHH
Confidence 3456788888998887666667764334455555432 2479999999877543
No 429
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=21.72 E-value=50 Score=34.98 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Q 011289 38 RAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMG 89 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G 89 (489)
..+|..++.+.|+..-.+.+++.+.+.+.+.|.+- ...|.|.-||++++|
T Consensus 142 ~~~l~~~l~~aGlP~gvv~~v~g~~~~~~~~L~~~--~~i~~V~ftGs~~~g 191 (431)
T cd07104 142 GLLIAEIFEEAGLPKGVLNVVPGGGSEIGDALVEH--PRVRMISFTGSTAVG 191 (431)
T ss_pred HHHHHHHHHHcCCCcccEEEeeCCchhHHHHHhcC--CCCCEEEEECCHHHH
Confidence 45788899999987777777776555555554432 247999999988854
No 430
>PF13941 MutL: MutL protein
Probab=21.67 E-value=1.9e+02 Score=31.19 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=47.9
Q ss_pred CcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC
Q 011289 31 GQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG 102 (489)
Q Consensus 31 g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G 102 (489)
|-++|-..-.-+......|+.+.....-.=..+++++ |++ ...|+|+.+||+=-|++|.+-.-.+.+.
T Consensus 83 Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~-i~~---~~PDiILLaGGtDgG~~~~il~nA~~La 150 (457)
T PF13941_consen 83 GLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEE-IRE---IRPDIILLAGGTDGGNKEVILHNAEMLA 150 (457)
T ss_pred ecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHH-Hhc---cCCCEEEEeCCccCCchHHHHHHHHHHH
Confidence 5556666666666677788888776555444455544 333 2589999999999999999877766654
No 431
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=21.59 E-value=2.7e+02 Score=26.37 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=42.3
Q ss_pred EEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCC
Q 011289 291 SVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPR 370 (489)
Q Consensus 291 ~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~ 370 (489)
++.|+-.|.+- ...+++++++. |+.. ..+++.+.+. +.+. ..+.|.||.|||-....+
T Consensus 3 ~ilIld~g~q~---------~~li~r~~re~-----g~v~--~e~~~~~~~~--~~~~----~~~~~giIlsGgp~sv~~ 60 (198)
T COG0518 3 KILILDFGGQY---------LGLIARRLREL-----GYVY--SEIVPYTGDA--EELP----LDSPDGIIISGGPMSVYD 60 (198)
T ss_pred EEEEEeCCCcH---------hHHHHHHHHHc-----CCce--EEEEeCCCCc--cccc----ccCCCEEEEcCCCCCCcc
Confidence 55666666543 36788999988 8633 3333333222 0111 125699999999855555
Q ss_pred CC--hHHHHHHhhccccc
Q 011289 371 DV--TPEATKELIERETP 386 (489)
Q Consensus 371 D~--T~eav~~~~~~~l~ 386 (489)
|- .+.....+.+...|
T Consensus 61 ~~~w~~~~~~~i~~~~~p 78 (198)
T COG0518 61 EDPWLPREKDLIKDAGVP 78 (198)
T ss_pred ccccchhHHHHHHHhCCC
Confidence 55 55555555544444
No 432
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=21.57 E-value=1.4e+02 Score=30.87 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=23.5
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHH
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKE 345 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~ 345 (489)
++|+||=.|.- |..++..|.++ |.+|.-+..=+|-.++|.+
T Consensus 2 ~kI~ViGaGsw----------GTALA~~la~n-----g~~V~lw~r~~~~~~~i~~ 42 (329)
T COG0240 2 MKIAVIGAGSW----------GTALAKVLARN-----GHEVRLWGRDEEIVAEINE 42 (329)
T ss_pred ceEEEEcCChH----------HHHHHHHHHhc-----CCeeEEEecCHHHHHHHHh
Confidence 45666654442 45677777777 7666655554444444433
No 433
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=21.54 E-value=4.1e+02 Score=26.44 Aligned_cols=111 Identities=20% Similarity=0.319 Sum_probs=60.6
Q ss_pred eEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHH---HHHHHHHH---HHhcCCCEEEEe
Q 011289 10 TIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEE---ELEKTLDN---AFSAGIDILLTS 83 (489)
Q Consensus 10 rV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~---~i~~~l~~---~~~~~~Dlvitt 83 (489)
||+||.=|- .....+-=.++..+...|++.|+++..+.+-+++.. .+.+.+.+ ... ..|+|+..
T Consensus 1 ~~~~~~gg~---------s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~v~~~ 70 (315)
T TIGR01205 1 RVAVLFGGK---------SAEHEISLVSAAAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLE-GIDVVFPV 70 (315)
T ss_pred CEEEEeCCC---------CCCeeeeHHHHHHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCC-CCCEEEEe
Confidence 577777662 112222223556667778889999998887775321 22333321 112 47888863
Q ss_pred -CCCcCCCCCchHHHHHhcCCeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcC--CC-hHHHHHHHHHHHHHHH
Q 011289 84 -GGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLP--GN-PVSCIVCFHLYIVPAI 159 (489)
Q Consensus 84 -GG~s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LP--Gn-P~aa~~~~~~~v~P~L 159 (489)
-|. .|..-.++..++.+ ++| |+ |.++..+.+-+..-.+
T Consensus 71 ~~g~-~~~~~~~~~~le~~-------------------------------------gip~~g~~~~~~~~~~dK~~~~~~ 112 (315)
T TIGR01205 71 LHGR-YGEDGTIQGLLELM-------------------------------------GIPYTGSGVLASALSMDKLLTKLL 112 (315)
T ss_pred cCCC-CCCCcHHHHHHHHc-------------------------------------CCCccCCCHHHHHHHHCHHHHHHH
Confidence 221 12222333333332 233 54 6777788887776666
Q ss_pred HHhcCCCCC
Q 011289 160 RHLSGWANP 168 (489)
Q Consensus 160 ~~l~G~~~~ 168 (489)
.+-.|.+.+
T Consensus 113 l~~~gip~p 121 (315)
T TIGR01205 113 WKALGLPTP 121 (315)
T ss_pred HHHCCCCCC
Confidence 666677654
No 434
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=21.54 E-value=2e+02 Score=29.39 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=33.9
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEE
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILT 361 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIt 361 (489)
|..-....+...+.++.+ |++-..+.--+||.+++++.|+.+ ++|-|||
T Consensus 167 NganS~VG~~ViQlaka~-GiktinvVRdR~~ieel~~~Lk~l----GA~~ViT 215 (354)
T KOG0025|consen 167 NGANSGVGQAVIQLAKAL-GIKTINVVRDRPNIEELKKQLKSL----GATEVIT 215 (354)
T ss_pred cCcccHHHHHHHHHHHHh-CcceEEEeecCccHHHHHHHHHHc----CCceEec
Confidence 333333444433333334 998888888888999999999874 7999998
No 435
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=21.49 E-value=2.7e+02 Score=26.64 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=41.6
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC-CeEEee
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYFNK 108 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G-~~~f~~ 108 (489)
-+...+++.|+++.... ..++.+.-.+.++.++.+++|-||+.+..+....+.+. .+.+.+ .+++-+
T Consensus 20 ~~~~~a~~~g~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~-~~~~~~iPvV~~~ 87 (273)
T cd06309 20 SIKDAAEKRGFDLKFAD-AQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLK-EAKAAGIPVILVD 87 (273)
T ss_pred HHHHHHHhcCCEEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHH-HHHHCCCCEEEEe
Confidence 34556778999988753 34567777788888877679999987643211122332 344456 555543
No 436
>PRK06490 glutamine amidotransferase; Provisional
Probab=21.36 E-value=3e+02 Score=26.77 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=38.0
Q ss_pred cceEEEEEE-eCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 288 TEFSVAILT-VSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 288 ~~~~v~Ii~-~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
.++++.+|. .+.| +-..+.++|++. |+++..+....++. +- .-++ ++|.+|.+||-+
T Consensus 6 ~~~~vlvi~h~~~~---------~~g~l~~~l~~~-----g~~~~v~~~~~~~~--~p----~~l~--~~dgvii~Ggp~ 63 (239)
T PRK06490 6 DKRPVLIVLHQERS---------TPGRVGQLLQER-----GYPLDIRRPRLGDP--LP----DTLE--DHAGAVIFGGPM 63 (239)
T ss_pred CCceEEEEecCCCC---------CChHHHHHHHHC-----CCceEEEeccCCCC--CC----Cccc--ccCEEEEECCCC
Confidence 456777774 2222 335688899988 88877665443331 11 1133 689999999877
Q ss_pred CCCCC
Q 011289 367 FTPRD 371 (489)
Q Consensus 367 ~t~~D 371 (489)
.-.|+
T Consensus 64 ~~~d~ 68 (239)
T PRK06490 64 SANDP 68 (239)
T ss_pred CCCCC
Confidence 54443
No 437
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=21.35 E-value=2.9e+02 Score=28.82 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=34.0
Q ss_pred HHHHHHHHccccccCCcEEEEEEEcCCC--HHHHHHHHHHhhhcCCCcEEEEeCCCCC
Q 011289 312 PRAVSVVNSSSEKLGGAKVVATDVVPDD--VGKIKEVLRRWSDIDKMDLILTLGGTGF 367 (489)
Q Consensus 312 ~~l~~~l~~~~~~~~G~~v~~~~~v~Dd--~~~I~~~l~~~~~~~~~DlVIttGG~G~ 367 (489)
..+.+.|++. |+++..+.-+.-+ .+.+.+.++.+.+ .++|+||-.||=++
T Consensus 48 ~~v~~~L~~~-----g~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGGGS~ 99 (382)
T PRK10624 48 AKVTDVLDAA-----GLAYEIYDGVKPNPTIEVVKEGVEVFKA-SGADYLIAIGGGSP 99 (382)
T ss_pred HHHHHHHHHC-----CCeEEEeCCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCChHH
Confidence 4577788887 8877655323322 4667777766654 58999999987554
No 438
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.33 E-value=2.1e+02 Score=25.87 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=35.9
Q ss_pred EEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCH-------HHHHHHHHHhhhcCCCcEEEEeCCC
Q 011289 293 AILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDV-------GKIKEVLRRWSDIDKMDLILTLGGT 365 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~-------~~I~~~l~~~~~~~~~DlVIttGG~ 365 (489)
-|+.+||.+..|--......|.. .|.+.+.. ++++....+-.+.. ..-.+.+.+.+. .+.|+|+...|+
T Consensus 2 ~i~~~GDSit~G~~~~~~~~~~~-~l~~~l~~--~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~~~~-~~pd~Vii~~G~ 77 (188)
T cd01827 2 KVACVGNSITEGAGLRAYDSYPS-PLAQMLGD--GYEVGNFGKSARTVLNKGDHPYMNEERYKNALA-FNPNIVIIKLGT 77 (188)
T ss_pred eEEEEecccccccCCCCCCchHH-HHHHHhCC--CCeEEeccCCcceeecCCCcCccchHHHHHhhc-cCCCEEEEEccc
Confidence 47889999988765433332222 22222110 34454444443321 111222233333 378999999887
Q ss_pred CC
Q 011289 366 GF 367 (489)
Q Consensus 366 G~ 367 (489)
=-
T Consensus 78 ND 79 (188)
T cd01827 78 ND 79 (188)
T ss_pred CC
Confidence 54
No 439
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.26 E-value=1.8e+02 Score=25.66 Aligned_cols=53 Identities=17% Similarity=0.116 Sum_probs=37.0
Q ss_pred CCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC
Q 011289 304 GAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG 366 (489)
Q Consensus 304 G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G 366 (489)
|...|-.-..++..|+.+ |++|...++----.+-++.+.+ .++|+|-.|.=++
T Consensus 9 gD~HdiGkniv~~~L~~~-----GfeVidLG~~v~~e~~v~aa~~-----~~adiVglS~L~t 61 (128)
T cd02072 9 SDCHAVGNKILDHAFTEA-----GFNVVNLGVLSPQEEFIDAAIE-----TDADAILVSSLYG 61 (128)
T ss_pred CchhHHHHHHHHHHHHHC-----CCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEecccc
Confidence 445566667888899999 9999998875544344444433 3799999887444
No 440
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=21.23 E-value=2.3e+02 Score=25.93 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=33.9
Q ss_pred HHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCC-CCCCCChHHHHHHhhccccc
Q 011289 312 PRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTG-FTPRDVTPEATKELIERETP 386 (489)
Q Consensus 312 ~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G-~t~~D~T~eav~~~~~~~l~ 386 (489)
..+.++|++. |+++..+. .|.. +.+ +. . ..+|.||.+||-+ +..+....+.++++.+..+|
T Consensus 10 ~~~~~~l~~~-----G~~~~~~~---~~~~-~~~-~~--~--~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~P 71 (178)
T cd01744 10 HNILRELLKR-----GCEVTVVP---YNTD-AEE-IL--K--LDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIP 71 (178)
T ss_pred HHHHHHHHHC-----CCeEEEEE---CCCC-HHH-Hh--h--cCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCC
Confidence 3468888888 87765443 3321 211 21 1 2699999999964 33333344455555544333
No 441
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=21.22 E-value=4.7e+02 Score=24.70 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCC
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGG 85 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG 85 (489)
.-+...+++.|+.+... ...+|++...+.++.+.++++|.||..+.
T Consensus 19 ~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd06273 19 QAFQETLAAHGYTLLVA-SSGYDLDREYAQARKLLERGVDGLALIGL 64 (268)
T ss_pred HHHHHHHHHCCCEEEEe-cCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34566788899988753 34566777778888877766899998764
No 442
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=21.15 E-value=2.5e+02 Score=25.74 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCc
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVS 87 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s 87 (489)
+.+..++++.|+++..+..-. +.+ + +. . . ++|.||.+||-+
T Consensus 10 ~~~~~~l~~~G~~~~~~~~~~-~~~---~-~~-~-~-~~dgiil~GG~~ 50 (178)
T cd01744 10 HNILRELLKRGCEVTVVPYNT-DAE---E-IL-K-L-DPDGIFLSNGPG 50 (178)
T ss_pred HHHHHHHHHCCCeEEEEECCC-CHH---H-Hh-h-c-CCCEEEECCCCC
Confidence 567889999999887553322 222 1 21 1 2 489999999964
No 443
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=21.15 E-value=3.1e+02 Score=25.50 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=36.2
Q ss_pred cCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCC-CCCCCCChHHHHHH
Q 011289 307 PDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGT-GFTPRDVTPEATKE 379 (489)
Q Consensus 307 ~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~-G~t~~D~T~eav~~ 379 (489)
.|+-...+.++|++. |+.+..+..-..+.+. +.. ...|.||.+||= ++..++...+.++.
T Consensus 8 ~dsft~~~~~~l~~~-----g~~~~~~~~~~~~~~~----~~~----~~~~~iilsgGp~~~~~~~~~~~~i~~ 68 (193)
T PRK08857 8 YDSFTYNLYQYFCEL-----GAQVKVVRNDEIDIDG----IEA----LNPTHLVISPGPCTPNEAGISLQAIEH 68 (193)
T ss_pred CCCcHHHHHHHHHHC-----CCcEEEEECCCCCHHH----Hhh----CCCCEEEEeCCCCChHHCcchHHHHHH
Confidence 477778899999998 8776544332122222 222 258899999976 44444444555544
No 444
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=20.94 E-value=2.5e+02 Score=31.25 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=54.1
Q ss_pred CcceEEEEEEeCCcccCCCcc-CCchHHHHHHHHccccccCCcEEEEEEEcCCC---------------HHHHHHHHHHh
Q 011289 287 YTEFSVAILTVSDTVASGAGP-DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDD---------------VGKIKEVLRRW 350 (489)
Q Consensus 287 ~~~~~v~Ii~~GdEi~~G~~~-D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd---------------~~~I~~~l~~~ 350 (489)
+.+|-++|+++.+++.+|... +.-...+.+-++++ +|+.+..-.+.-|| .+.|...++..
T Consensus 40 ~~kP~IgI~~s~~d~~p~h~hl~~l~~~vk~~i~~a----Gg~p~ef~t~~v~DGiamG~~GM~~SL~SRelIAds~e~~ 115 (575)
T COG0129 40 FGKPIIGIANSYNDMVPGHQHLKDLAQLVKEGIREA----GGVPVEFGTIAVCDGIAMGHDGMPYSLPSRELIADSVEEV 115 (575)
T ss_pred cCCCeEEEEeccccCcCchhhHHHHHHHHHHHHHHc----CCceeEeCCCCccCccccCCCCcccccccHHHHHHHHHHH
Confidence 588999999999999887653 33334444555555 36666666666666 78999999999
Q ss_pred hhcCCCcEEEEeCC
Q 011289 351 SDIDKMDLILTLGG 364 (489)
Q Consensus 351 ~~~~~~DlVIttGG 364 (489)
+....+|-+|..||
T Consensus 116 ~~~~~~Da~V~i~~ 129 (575)
T COG0129 116 LSAHPFDGVVLIGG 129 (575)
T ss_pred HhccCcceEEEecC
Confidence 88778898887764
No 445
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=20.92 E-value=1.8e+02 Score=30.61 Aligned_cols=114 Identities=17% Similarity=0.188 Sum_probs=63.6
Q ss_pred eeeeeCCeEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEE-EeecCCHHHHHHHHHHHHhc------
Q 011289 3 VKVYRTPTIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDL-GIVRDDEEELEKTLDNAFSA------ 75 (489)
Q Consensus 3 V~V~r~prV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~-~~v~Dd~~~i~~~l~~~~~~------ 75 (489)
|.-+++-+|.+|.| +++ ...+..++++.|.....+ .+.-+|++++.+.++++++.
T Consensus 7 I~~~rPd~VvFl~S------~~s------------~~~~~~i~~~~G~~~~~ye~v~v~D~~dl~~~~~~~~~~~~~~~~ 68 (380)
T TIGR02710 7 IAEKRPDKVVFLGS------KKT------------VEFIAEEAEAQGKDPPEYKTIELEDIDQLYRGYQELFEAFEDLMR 68 (380)
T ss_pred HHhcCCCEEEEEec------Ccc------------hhHHHHHHHHhCCCCCCceEEEecChHHHHHHHHHHHHHHHHhhc
Confidence 34567778889888 222 134677888888766552 23347888777776664321
Q ss_pred --CCCEEE-EeCCCcCCCCCchHHHH-Hh--cC-CeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHH
Q 011289 76 --GIDILL-TSGGVSMGDKDFVKPLL-QK--KG-TIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCI 148 (489)
Q Consensus 76 --~~Dlvi-ttGG~s~G~~D~~~~~l-~~--~G-~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~ 148 (489)
+..+|+ .||||=. ++.-+. .. .| ..++-+-.-.-|+ .. .++-.+..+=||..++
T Consensus 69 ~~~~~iivD~TGGTK~----Msagl~laa~~~g~~~~yvg~~~~~gk------v~---------~GTE~l~~~~nP~~v~ 129 (380)
T TIGR02710 69 YGDQEILADLTGGTKP----MTAGLVLAAILYGELSVYTGFRDRQGR------VI---------PGTERLIEPSDPYNVE 129 (380)
T ss_pred CCCceEEEECCCChHH----HHHHHHHHHHhcCCcEEEeccccCCCc------cc---------CCceeccccCCHHHHH
Confidence 246666 8998632 222221 11 13 1222222222222 11 2455678889999988
Q ss_pred HHHHH
Q 011289 149 VCFHL 153 (489)
Q Consensus 149 ~~~~~ 153 (489)
--.+.
T Consensus 130 ~~~e~ 134 (380)
T TIGR02710 130 GNTEQ 134 (380)
T ss_pred HHHHH
Confidence 76553
No 446
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=20.90 E-value=3.5e+02 Score=30.03 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=36.8
Q ss_pred EEEEeCCCcCCCCCchHHHHHhcC-CeEEeeeeecCCCceeeEEEccCCCCccccccEEEEEcCCChHHHHHHHHHH
Q 011289 79 ILLTSGGVSMGDKDFVKPLLQKKG-TIYFNKVCMKPGKPLTFAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLY 154 (489)
Q Consensus 79 lvittGG~s~G~~D~~~~~l~~~G-~~~f~~v~~kPGkp~~~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~ 154 (489)
+||+||.-|. -..+|.++. ..+-+ +++++|..+.|+... .|||+.+.+..+..+
T Consensus 297 lii~TG~qge-----p~aaL~r~a~~~h~~-~~i~~gD~vIfss~~----------------ipgne~~~~~~~n~l 351 (555)
T COG0595 297 LIICTGSQGE-----PMAALSRMANGEHRY-VKIKEGDTVIFSSSP----------------IPGNEAAVYRLLNRL 351 (555)
T ss_pred EEEEeCCCCC-----chhhhhHhhcCCccc-eecCCCCeEEEeccC----------------cCCcHHHHHHHHHHH
Confidence 7778876553 344555554 33333 788899888876532 899999888877766
No 447
>PRK06852 aldolase; Validated
Probab=20.87 E-value=3.2e+02 Score=27.90 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCeEEEEEeec----CCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHH
Q 011289 40 MLLAAAMQQHCKLIDLGIVR----DDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLL 98 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~----Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l 98 (489)
....+..+.|++++-..... +|++.+++.++.+ +.=-||+.||...++.|++..+-
T Consensus 192 ~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~---g~vpVviaGG~k~~~~e~L~~v~ 251 (304)
T PRK06852 192 GAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAA---GRTKVVCAGGSSTDPEEFLKQLY 251 (304)
T ss_pred HHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhC---CCCcEEEeCCCCCCHHHHHHHHH
Confidence 33455668899988776553 6678888866522 12348999999998777755543
No 448
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=20.86 E-value=1.5e+02 Score=30.15 Aligned_cols=50 Identities=10% Similarity=-0.050 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHH---HH--HHHHHHHHhcCCCEEEEeCCC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEE---EL--EKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~---~i--~~~l~~~~~~~~DlvittGG~ 86 (489)
.-|.-++..|+.+|+++..+..-+...+ .. ...+.+++. ++|+|++.=-.
T Consensus 146 ~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~-~aDvvv~~lPl 200 (312)
T PRK15469 146 VLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLS-QTRVLINLLPN 200 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHh-cCCEEEECCCC
Confidence 3467788889999999988765443211 11 134667776 49999987643
No 449
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=20.84 E-value=3.4e+02 Score=25.29 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=47.6
Q ss_pred HHHHHHHHhCCCe-EEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 39 AMLLAAAMQQHCK-LIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 39 ~~l~a~l~~~G~~-~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
.-|..+|++.|++ +...|+..| -=+.+.+..+.+.+++++|.+-+++.-+.+.-..+++.+
T Consensus 127 t~L~~~L~~~~i~~lii~G~~t~--~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~ 188 (196)
T cd01011 127 TGLAEYLRERGIDRVDVVGLATD--YCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEM 188 (196)
T ss_pred hhHHHHHHHCCCCEEEEEEeccc--HHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHH
Confidence 5688999999974 455566666 557777788877789999999999988877777777765
No 450
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=20.84 E-value=2.4e+02 Score=26.19 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=28.4
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCC
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
|.-...+.+.|+.. |+.+..+.... +.+. +...++ ++|.||.+||-+..
T Consensus 18 ~~~~~~~~~~l~~~-----G~~~~iv~~~~-~~~~----~~~~l~--~~dglvl~GG~~~~ 66 (189)
T cd01745 18 DYLNQYYVDAVRKA-----GGLPVLLPPVD-DEED----LEQYLE--LLDGLLLTGGGDVD 66 (189)
T ss_pred HHHHHHHHHHHHHC-----CCEEEEeCCCC-ChHH----HHHHHh--hCCEEEECCCCCCC
Confidence 44445566677777 87654333222 2222 333334 69999999997653
No 451
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=20.82 E-value=1.8e+02 Score=26.08 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=49.5
Q ss_pred HHHHhCCCeEE--EEEeecCCHHHHHHHHHHHHh-cCCCEEEEeCCCcCCC---CCchHHHHHhcCCeEEeeeeecCCCc
Q 011289 43 AAAMQQHCKLI--DLGIVRDDEEELEKTLDNAFS-AGIDILLTSGGVSMGD---KDFVKPLLQKKGTIYFNKVCMKPGKP 116 (489)
Q Consensus 43 a~l~~~G~~~~--~~~~v~Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G~---~D~~~~~l~~~G~~~f~~v~~kPGkp 116 (489)
+.|++.|.+.. ..-.||-..|. --+++++++ .++|.||+.|=+=.|+ +||+.....+- .-.++++=+.|
T Consensus 24 ~~l~~~g~~~~~i~v~~VPGa~Ei-P~a~~~l~~~~~~DavI~LG~VIrG~T~H~e~v~~~v~~g----l~~~sl~~~~P 98 (138)
T TIGR00114 24 DALKRLGAEVDNIDVIWVPGAFEL-PLAVKKLAETGKYDAVIALGCVIRGGTPHFEYVADEAAKG----IADLALDYDKP 98 (138)
T ss_pred HHHHHcCCCccceEEEECCcHHHH-HHHHHHHHhcCCCCEEEEEeeEEeCCCchhHHHHHHHHHH----HHHHHhhhCCC
Confidence 35667787644 45567765543 333344443 3599999999874444 56676666553 45677888999
Q ss_pred eeeEEEc
Q 011289 117 LTFAEIN 123 (489)
Q Consensus 117 ~~~a~~~ 123 (489)
+.+|.+.
T Consensus 99 V~~GvLt 105 (138)
T TIGR00114 99 VIFGILT 105 (138)
T ss_pred EEEEecC
Confidence 9999875
No 452
>PRK13054 lipid kinase; Reviewed
Probab=20.77 E-value=1.7e+02 Score=29.39 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCeEEEEEe-ecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 40 MLLAAAMQQHCKLIDLGI-VRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~-v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
-+...|++.|.++..... -+++..++.+. +..+++|+||..||=|. +.+++..+
T Consensus 22 ~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~---~~~~~~d~vvv~GGDGT-----l~evv~~l 76 (300)
T PRK13054 22 EAVGLLREEGHTLHVRVTWEKGDAARYVEE---ALALGVATVIAGGGDGT-----INEVATAL 76 (300)
T ss_pred HHHHHHHHcCCEEEEEEecCCCcHHHHHHH---HHHcCCCEEEEECCccH-----HHHHHHHH
Confidence 345568888987654322 23455444433 33336899999998664 67777654
No 453
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.75 E-value=2.3e+02 Score=27.32 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGV 86 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~ 86 (489)
..+-+++.+++.+|+++++-.-=+.-..++++.++... +++|+++|--|-
T Consensus 78 ~DGEliA~~l~kfG~~~IRGSs~Kgg~~Alr~l~k~Lk-~G~~i~itpDgP 127 (214)
T COG2121 78 RDGELIARLLEKFGLRVIRGSSNKGGISALRALLKALK-QGKSIAITPDGP 127 (214)
T ss_pred cCHHHHHHHHHHcCceEEeccCCcchHHHHHHHHHHHh-CCCcEEEcCCCC
Confidence 45788999999999999877665555667777776554 589999998865
No 454
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=20.73 E-value=1.6e+02 Score=30.09 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCeEEEEE-eecC-CHHHHHHHHHHHHhcCCCEEEEeCCCcC
Q 011289 40 MLLAAAMQQHCKLIDLG-IVRD-DEEELEKTLDNAFSAGIDILLTSGGVSM 88 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~-~v~D-d~~~i~~~l~~~~~~~~DlvittGG~s~ 88 (489)
-+...|++. .++..+. +.++ +.+.+.+.++.+.+.++|.||-.||=|+
T Consensus 41 ~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~ 90 (332)
T cd08180 41 KVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSA 90 (332)
T ss_pred HHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchH
Confidence 455667665 6665553 3333 3566777777776667999998888665
No 455
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=20.71 E-value=1.9e+02 Score=27.89 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=38.6
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCC-----C---HHHHH-----------------
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPD-----D---VGKIK----------------- 344 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~D-----d---~~~I~----------------- 344 (489)
.|++||.+|--...|. ++.-.......|++. |+++.....=.. + .....
T Consensus 2 kkVlills~~~~~dG~-e~~E~~~P~~~L~~a-----G~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (217)
T PRK11780 2 KKIAVILSGCGVYDGS-EIHEAVLTLLALDRA-----GAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEI 75 (217)
T ss_pred CEEEEEEccCCCCCCE-ehhHHHHHHHHHHHC-----CCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCC
Confidence 4788887643322222 233334455677777 887776553110 0 00000
Q ss_pred HHHHHhhhcCCCcEEEEeCCCCCC
Q 011289 345 EVLRRWSDIDKMDLILTLGGTGFT 368 (489)
Q Consensus 345 ~~l~~~~~~~~~DlVIttGG~G~t 368 (489)
..+.+. +.+.+|.|+.-||.|+.
T Consensus 76 ~~l~~v-~~~dyDalviPGG~g~~ 98 (217)
T PRK11780 76 KDLAEA-DAEDFDALIVPGGFGAA 98 (217)
T ss_pred CchhHC-ChhhCCEEEECCCCchh
Confidence 123332 12479999999998864
No 456
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=20.66 E-value=2.7e+02 Score=29.08 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=43.7
Q ss_pred cceEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCC---HHHHHHHHHHhhhcCCCcEEEEeC
Q 011289 288 TEFSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDD---VGKIKEVLRRWSDIDKMDLILTLG 363 (489)
Q Consensus 288 ~~~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd---~~~I~~~l~~~~~~~~~DlVIttG 363 (489)
..-++++|.-.++.-. .....+.+.+++. |+++.....++++ ..++...|+++.. .++|+||..+
T Consensus 175 ~~k~vaii~~~~~~g~-----~~~~~~~~~l~~~-----gi~i~~~~~~~~~~~~~~d~~~~l~~i~~-~~~dvIil~~ 242 (410)
T cd06363 175 GWNWVAFLGSDDEYGR-----DGLQLFSELIANT-----GICIAYQGLIPLDTDPETDYQQILKQINQ-TKVNVIVVFA 242 (410)
T ss_pred CCcEEEEEEeCChhHH-----HHHHHHHHHHHHC-----CeEEEEEEEecCCCchHHHHHHHHHHHhc-CCCeEEEEEc
Confidence 3457888865444221 1224555677777 9999887777653 5678888888764 5899999866
No 457
>TIGR02841 spore_YyaC putative sporulation protein YyaC. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, also called YyaC, is a member of that panel and is otherwise uncharacterized. The second round of PSI-BLAST shows many similarities to the germination protease GPR, which is found in exactly the same set of organisms and has a known role in the sporulation/germination process.
Probab=20.63 E-value=2.1e+02 Score=25.70 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=53.2
Q ss_pred cChHHHHHHHHHhCCCe-EEEEEeecC--CHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcCCeEEeeeee
Q 011289 35 DSNRAMLLAAAMQQHCK-LIDLGIVRD--DEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCM 111 (489)
Q Consensus 35 dsn~~~l~a~l~~~G~~-~~~~~~v~D--d~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G~~~f~~v~~ 111 (489)
|+-+|++..+|++.+.. ...||.+.+ +.--|++.+++..+...+=.|+.==.+.|..|. .|.+.+..=.+
T Consensus 16 DsLGPLVGt~L~~~~~~~~~VyGTL~~PVHA~NL~e~l~~I~~~~~~~~iIAIDAcLG~~~~-------vG~I~~~~gpl 88 (140)
T TIGR02841 16 DALGPLVGMKLKFLLLNNFHVFGTLEEPVHAKNLEEKLKIIKKKHPNPFIIAIDACLGRTKS-------VGHITIGKGPL 88 (140)
T ss_pred cccchhhHHHHHhccCCCCeEEECCCCCcccccHHHHHHHHHHhCCCCeEEEEECccCCccc-------ccEEEeccCCC
Confidence 89999999999998873 677888876 444477777766542223333333456666665 58888999999
Q ss_pred cCCCc
Q 011289 112 KPGKP 116 (489)
Q Consensus 112 kPGkp 116 (489)
+||+-
T Consensus 89 ~PG~g 93 (140)
T TIGR02841 89 KPGAA 93 (140)
T ss_pred CCCcc
Confidence 99984
No 458
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=20.63 E-value=2.4e+02 Score=27.98 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCeEEEEEeecC-CHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 40 MLLAAAMQQHCKLIDLGIVRD-DEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~D-d~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
-+...|++.|.++..+..-.. +.+.+ ++++.+.++|+||+.||=|. +.+++..+
T Consensus 23 ~i~~~l~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~d~ivv~GGDGT-----l~~v~~~l 77 (293)
T TIGR00147 23 EVIMLLREEGMEIHVRVTWEKGDAARY---VEEARKFGVDTVIAGGGDGT-----INEVVNAL 77 (293)
T ss_pred HHHHHHHHCCCEEEEEEecCcccHHHH---HHHHHhcCCCEEEEECCCCh-----HHHHHHHH
Confidence 466778889988765544332 33333 33444445899999998764 67777665
No 459
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=20.63 E-value=3.9e+02 Score=31.22 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHhCCCeEEEEE----eecCC--------HHHHHHHHHHHHhcCCCEEEEeCCCcCCC-----------CC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLG----IVRDD--------EEELEKTLDNAFSAGIDILLTSGGVSMGD-----------KD 92 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~----~v~Dd--------~~~i~~~l~~~~~~~~DlvittGG~s~G~-----------~D 92 (489)
-++.+++++|++.|+....+. ++.|+ .+...+.+++.+....+++|++|-.+... -|
T Consensus 129 lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRgGSD 208 (819)
T PRK09436 129 LSIAIMAAVLEARGHDVTVIDPRELLLADGHYLESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKGELVTLGRNGSD 208 (819)
T ss_pred HHHHHHHHHHHhCCCCeEEECHHHeEEecCCCCCceechHhhHHHHHHHHhcCCcEEEecCcccCCCCCCEEEeCCCCch
Confidence 367889999999999888875 23332 34556667776543367999999877555 39
Q ss_pred chHHHHHhc
Q 011289 93 FVKPLLQKK 101 (489)
Q Consensus 93 ~~~~~l~~~ 101 (489)
++...+...
T Consensus 209 ~~A~~~A~~ 217 (819)
T PRK09436 209 YSAAILAAC 217 (819)
T ss_pred HHHHHHHHH
Confidence 999888773
No 460
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=20.61 E-value=62 Score=33.61 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhcCCCcEEEEeCCCCC
Q 011289 341 GKIKEVLRRWSDIDKMDLILTLGGTGF 367 (489)
Q Consensus 341 ~~I~~~l~~~~~~~~~DlVIttGG~G~ 367 (489)
.-+++.|..+++..-+|+||||||.+.
T Consensus 72 aGlr~~i~~Li~~~~VD~iVTTganl~ 98 (347)
T PRK02492 72 AGCMQVYIDLVRNNMVDAIVATGANIV 98 (347)
T ss_pred HHHHHHHHHHHHcCCeeEEEECCCCch
Confidence 457888888888777999999999653
No 461
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=20.54 E-value=74 Score=34.06 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Q 011289 36 SNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGD 90 (489)
Q Consensus 36 sn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~ 90 (489)
..+..|..++.+.|+..-.+.++..+.+ +.+.|.+. ...|.|.-||++..|.
T Consensus 157 ~~~~~l~~~~~~aGlP~g~~~~v~g~~~-~~~~l~~~--~~v~~v~fTGs~~~g~ 208 (457)
T cd07090 157 LTALLLAEILTEAGLPDGVFNVVQGGGE-TGQLLCEH--PDVAKVSFTGSVPTGK 208 (457)
T ss_pred HHHHHHHHHHHHcCCCcccEEEEeCChh-hHHHHhcC--CCCCEEEEECcHHHHH
Confidence 3556788888998887777777765544 44544432 2479999999887543
No 462
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.50 E-value=1.9e+02 Score=24.77 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=33.6
Q ss_pred ccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCC
Q 011289 306 GPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGG 364 (489)
Q Consensus 306 ~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG 364 (489)
..|--..+++.+|+.. |+++...+.- -..+++.+++.+. ++|+|.+|+-
T Consensus 11 ~H~lG~~~~~~~l~~~-----G~~vi~lG~~-vp~e~~~~~a~~~----~~d~V~iS~~ 59 (122)
T cd02071 11 GHDRGAKVIARALRDA-----GFEVIYTGLR-QTPEEIVEAAIQE----DVDVIGLSSL 59 (122)
T ss_pred hhHHHHHHHHHHHHHC-----CCEEEECCCC-CCHHHHHHHHHHc----CCCEEEEccc
Confidence 3344445677788888 9999988865 2234555555543 7999999874
No 463
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.49 E-value=98 Score=27.19 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=35.8
Q ss_pred EEEEeCCcccCCCccCCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCC
Q 011289 293 AILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDV 372 (489)
Q Consensus 293 ~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~ 372 (489)
-|+.+||.+..|...+ .+.-++-...+.+.+.+++...++|+|+...|+=-...-.
T Consensus 2 ~~~~~Gds~~~g~~~n------------------------~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~~~ 57 (157)
T cd01833 2 RIMPLGDSITWGDKDH------------------------EGHSGYLIDQIAAAAADWVLAAKPDVVLLHLGTNDLVLNR 57 (157)
T ss_pred ceeecCCceeecCCCC------------------------CCCCCccHHHHHHHhhhccccCCCCEEEEeccCcccccCC
Confidence 4678899999882211 1122333344555554455446899999998876443333
Q ss_pred hHHHHHH
Q 011289 373 TPEATKE 379 (489)
Q Consensus 373 T~eav~~ 379 (489)
..+.+.+
T Consensus 58 ~~~~~~~ 64 (157)
T cd01833 58 DPDTAPD 64 (157)
T ss_pred CHHHHHH
Confidence 3444433
No 464
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=20.48 E-value=4.6e+02 Score=26.96 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHh-cCCCEEEEeCCCcCCCCCchHHHHHhcCCeEEeeeeecCCCcee
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFS-AGIDILLTSGGVSMGDKDFVKPLLQKKGTIYFNKVCMKPGKPLT 118 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~-~~~DlvittGG~s~G~~D~~~~~l~~~G~~~f~~v~~kPGkp~~ 118 (489)
.+..++++.++.+----.-.=-+.-+++.|..+++ .-.|+||||||. +..+.++.+|.-++.|-..-.++-+-
T Consensus 48 i~~~ml~~~~~~ifL~~tg~mvsaGlr~ii~~Li~~~~VD~iVtTgan------iehD~~~~lg~~~y~G~~~~dd~~Lr 121 (316)
T PRK02301 48 IYEEMLADDDVTKFFGLAGAMVPAGMRGIVSDLIRDGHIDVLVTTGAN------LTHDVIEAIGGHHHHGTAHAHDEELR 121 (316)
T ss_pred HHHHHHhCCCCeEEEEcccchhHHHHHHHHHHHHHcCCeeEEEcCCCc------hHHHHHHHcCCCeeccCCCCCHHHHH
Q ss_pred eEEEccCCCCccccccEEEEEcCCChHHHHHHHHHHHHHHHHHh
Q 011289 119 FAEINIKPTDDVMVNKILAFGLPGNPVSCIVCFHLYIVPAIRHL 162 (489)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~v~~LPGnP~aa~~~~~~~v~P~L~~l 162 (489)
---++ ..-=+.+| ...+..|+.++.|++.++
T Consensus 122 ~~gin----------RIgd~~ip---~e~y~~~E~~i~~il~~~ 152 (316)
T PRK02301 122 DEGID----------RIYDVYLP---QEHFADFEEFLQDVFPGL 152 (316)
T ss_pred HcCCC----------ccceeCCC---hHHHHHHHHHHHHHHHhh
No 465
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=20.45 E-value=1.2e+02 Score=31.01 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=43.9
Q ss_pred eEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHH-HHhC-CCeEEEEE------eecCCHHHHHHHHHHHHhcCCCEEE
Q 011289 10 TIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAA-AMQQ-HCKLIDLG------IVRDDEEELEKTLDNAFSAGIDILL 81 (489)
Q Consensus 10 rV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~-l~~~-G~~~~~~~------~v~Dd~~~i~~~l~~~~~~~~Dlvi 81 (489)
||.||.||--|.....+ ...+-.+ +...++..+ +++. -+++.... +-++|-..|.+.+++.++ ++|=||
T Consensus 1 kI~vi~TGGTI~~~~~~-~~~~~~~-~~~~~l~~~~l~~~~~~~~~~~~~~dS~~~t~~~~~~la~~i~~~~~-~~~GvV 77 (313)
T PF00710_consen 1 KILVIYTGGTIAMVYSP-GGGGLAP-TGEELLEALPLSNIADIEVEQFMNIDSSDMTPEDWLELARAIQAALD-DYDGVV 77 (313)
T ss_dssp EEEEEEEESGGGEEEST-TTTSCEB-HHHHHHHHSGGGGTSEEEEEEEEEE-GGG--HHHHHHHHHHHHHHHT-TCSEEE
T ss_pred CEEEEEeCchhhceEcC-CCCeecc-CHHHHHHhCccccCCeEEEccccccCchhcCHHHHHHHHHHHHHHHH-hcCeEE
Confidence 78999999988765443 1112333 344555555 4443 22223222 245567788999999886 499999
Q ss_pred EeCCC
Q 011289 82 TSGGV 86 (489)
Q Consensus 82 ttGG~ 86 (489)
+|-||
T Consensus 78 VtHGT 82 (313)
T PF00710_consen 78 VTHGT 82 (313)
T ss_dssp EE--S
T ss_pred EecCc
Confidence 88886
No 466
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=20.39 E-value=1.4e+02 Score=25.47 Aligned_cols=32 Identities=34% Similarity=0.592 Sum_probs=18.6
Q ss_pred CcEEEEEEEcCCCHH-HHHHHHHHhhhcCCCcEEEEe
Q 011289 327 GAKVVATDVVPDDVG-KIKEVLRRWSDIDKMDLILTL 362 (489)
Q Consensus 327 G~~v~~~~~v~Dd~~-~I~~~l~~~~~~~~~DlVItt 362 (489)
|++..+ +-|+++ +++++++.+.+ +++++|+.|
T Consensus 21 Gv~~~~---v~~~~~~~~~~~~~~l~~-~~~~iIiit 53 (104)
T COG1436 21 GVRVVY---VADDEEDELRAALRVLAE-DDVGIILIT 53 (104)
T ss_pred cceeEE---EecChhHHHHHHHHhhcc-CCceEEEEe
Confidence 554444 334444 57777776665 467777764
No 467
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.38 E-value=1.6e+02 Score=31.49 Aligned_cols=56 Identities=13% Similarity=0.237 Sum_probs=36.4
Q ss_pred ecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEE
Q 011289 15 STGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLT 82 (489)
Q Consensus 15 stGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~Dlvit 82 (489)
..|||++-+ ...+.++...+...++++|+++..+. .++|++.+++++.. +..+|+.
T Consensus 106 ~~Gd~VI~~-------~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~~d~e~l~~~l~~----~tk~V~~ 161 (437)
T PRK05613 106 GAGDHIVTS-------PRLYGGTETLFLVTLNRLGIEVTFVE-NPDDPESWQAAVQP----NTKAFFG 161 (437)
T ss_pred CCCCEEEEC-------CCccHHHHHHHHHHHHhcCeEEEEEC-CCCCHHHHHHhCCc----cCeEEEE
Confidence 446776632 23456666666778899999998876 45577777766642 3566664
No 468
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.36 E-value=2.3e+02 Score=27.30 Aligned_cols=51 Identities=14% Similarity=0.308 Sum_probs=42.1
Q ss_pred CCchHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCC
Q 011289 308 DRSGPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGT 365 (489)
Q Consensus 308 D~n~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~ 365 (489)
-..|..++..+.+. |+++++-..=..-..++.+.++.+.+ ++|++||--|-
T Consensus 77 s~DGEliA~~l~kf-----G~~~IRGSs~Kgg~~Alr~l~k~Lk~--G~~i~itpDgP 127 (214)
T COG2121 77 SRDGELIARLLEKF-----GLRVIRGSSNKGGISALRALLKALKQ--GKSIAITPDGP 127 (214)
T ss_pred CcCHHHHHHHHHHc-----CceEEeccCCcchHHHHHHHHHHHhC--CCcEEEcCCCC
Confidence 34568899999999 99999999877778888888887755 99999997653
No 469
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=20.31 E-value=1.6e+02 Score=19.74 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=26.2
Q ss_pred eEEEEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeE
Q 011289 10 TIAVLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKL 52 (489)
Q Consensus 10 rV~iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~ 52 (489)
+++|+--|+.+.... .+..|...+|...+++.|.+|
T Consensus 2 kiai~n~gnni~~fk-------t~p~setiyl~~~~~~mgl~v 37 (38)
T PF09198_consen 2 KIAIINMGNNIQNFK-------TTPSSETIYLFKCISDMGLNV 37 (38)
T ss_dssp EEEEEESSS--SSSS-------SHHHHHHHHHHHHHHTTT-EE
T ss_pred eEEEEecCCceecee-------ecCccceEeHHHHHHHhCCCC
Confidence 789999999987543 345677888999999999875
No 470
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=20.28 E-value=2e+02 Score=28.60 Aligned_cols=46 Identities=15% Similarity=0.060 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCCeEEEEEeecCCHHHHHH-------HHHHHHhcCCCEEEEeC
Q 011289 38 RAMLLAAAMQQHCKLIDLGIVRDDEEELEK-------TLDNAFSAGIDILLTSG 84 (489)
Q Consensus 38 ~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~-------~l~~~~~~~~DlvittG 84 (489)
+..++..|.+.|+++..+..-++..+.+.+ ...++++ ++|+||+.=
T Consensus 11 G~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-~aDivi~~v 63 (291)
T TIGR01505 11 GSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTE-QADVIFTMV 63 (291)
T ss_pred HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHh-cCCEEEEec
Confidence 455666666777777655433322222111 2344555 488888874
No 471
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=20.26 E-value=3.2e+02 Score=27.96 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=42.9
Q ss_pred eEEEEEEeCCcccCCCccCCchHHHHHHHHccccccCCc----EEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeC
Q 011289 290 FSVAILTVSDTVASGAGPDRSGPRAVSVVNSSSEKLGGA----KVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLG 363 (489)
Q Consensus 290 ~~v~Ii~~GdEi~~G~~~D~n~~~l~~~l~~~~~~~~G~----~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttG 363 (489)
-+++||...|+.-. .....+.+.+++. |+ ++.....++.+...+...|+++.. .++|+||..+
T Consensus 155 ~~vaii~~~~~~g~-----~~~~~~~~~~~~~-----g~~~~~~v~~~~~~~~~~~d~~~~l~~ik~-~~~~vIvl~~ 221 (377)
T cd06379 155 NKVILLVSDDHEGR-----AAQKRFETLLEER-----EIEFKIKVEKVVEFEPGEKNVTSLLQEAKE-LTSRVILLSA 221 (377)
T ss_pred eEEEEEEEcCcchh-----HHHHHHHHHHHhc-----CCccceeeeEEEecCCchhhHHHHHHHHhh-cCCeEEEEEc
Confidence 46788876655321 1234566777777 88 777777776666677777877654 5899999866
No 472
>PRK13337 putative lipid kinase; Reviewed
Probab=20.24 E-value=1.8e+02 Score=29.21 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=36.2
Q ss_pred HHHHHHHhCCCeEEEEEe-ecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhc
Q 011289 40 MLLAAAMQQHCKLIDLGI-VRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKK 101 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~-v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~ 101 (489)
-+...|++.|+++..+.+ -+++.+++.+. +.++++|+||+.||=|. +.+++..+
T Consensus 23 ~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~---~~~~~~d~vvv~GGDGT-----l~~vv~gl 77 (304)
T PRK13337 23 DVLQKLEQAGYETSAHATTGPGDATLAAER---AVERKFDLVIAAGGDGT-----LNEVVNGI 77 (304)
T ss_pred HHHHHHHHcCCEEEEEEecCCCCHHHHHHH---HHhcCCCEEEEEcCCCH-----HHHHHHHH
Confidence 456678899988655433 35556655443 33346899999998775 77777654
No 473
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=20.17 E-value=5.5e+02 Score=24.20 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeCCCcCCCCCchHHHHHhcC-CeEEee
Q 011289 39 AMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSGGVSMGDKDFVKPLLQKKG-TIYFNK 108 (489)
Q Consensus 39 ~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittGG~s~G~~D~~~~~l~~~G-~~~f~~ 108 (489)
.-+...+++.|+++.....-.++.+...+.++.+...++|-||.+..... ..+.+ +.+.+.+ .+++-+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~-~~~~~~~ipvv~i~ 87 (270)
T cd01545 19 LGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSD-NPELL-DLLDEAGVPYVRIA 87 (270)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCC-ccHHH-HHHHhcCCCEEEEe
Confidence 34556788899988765433233334445555454446999998876432 22222 3344455 554433
No 474
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.10 E-value=3.4e+02 Score=24.36 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=42.8
Q ss_pred EEecCCcCcCCCCCCCCCCcEEcChHHHHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHH-hcCCCEEEEeCCC
Q 011289 13 VLSTGDELVEPTTQCLDRGQIRDSNRAMLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAF-SAGIDILLTSGGV 86 (489)
Q Consensus 13 iistGdEl~~~g~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~-~~~~DlvittGG~ 86 (489)
|+..||-+..-... . ..+ -+...+-...+..+...++-.+....+.+.+++.+ ..+.|+|+...|+
T Consensus 3 i~~~GDSi~~g~~~--~-----~~~-~~~~~l~~~~~~~v~n~g~~G~~~~~~l~~l~~~~~~~~~d~v~i~~G~ 69 (183)
T cd04501 3 VVCLGDSITYGYPV--G-----PEA-SWVNLLAEFLGKEVINRGINGDTTSQMLVRFYEDVIALKPAVVIIMGGT 69 (183)
T ss_pred EEEEccccccCcCC--C-----Ccc-hHHHHHHhhcCCeEEecCcCCccHHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 67789988742111 0 111 23333444567889999999998888777776643 3468999888765
No 475
>PRK13057 putative lipid kinase; Reviewed
Probab=20.09 E-value=2.6e+02 Score=27.74 Aligned_cols=59 Identities=25% Similarity=0.469 Sum_probs=35.7
Q ss_pred hHHHHHHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeCCCCCCCCCChHHHHHHhhcc
Q 011289 311 GPRAVSVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLGGTGFTPRDVTPEATKELIER 383 (489)
Q Consensus 311 ~~~l~~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttGG~G~t~~D~T~eav~~~~~~ 383 (489)
...+.+.|.+. |+++..... .......+..++.. .++|.||..||=| -..+++..+.+.
T Consensus 15 ~~~i~~~l~~~-----g~~~~~~~t--~~~~~a~~~~~~~~--~~~d~iiv~GGDG-----Tv~~v~~~l~~~ 73 (287)
T PRK13057 15 LAAARAALEAA-----GLELVEPPA--EDPDDLSEVIEAYA--DGVDLVIVGGGDG-----TLNAAAPALVET 73 (287)
T ss_pred HHHHHHHHHHc-----CCeEEEEec--CCHHHHHHHHHHHH--cCCCEEEEECchH-----HHHHHHHHHhcC
Confidence 45677788888 887554433 33444444444433 3799999999855 334455455443
No 476
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=20.08 E-value=1.3e+02 Score=30.13 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCCE-EEEeCCCcCCCCCchH
Q 011289 65 LEKTLDNAFSAGIDI-LLTSGGVSMGDKDFVK 95 (489)
Q Consensus 65 i~~~l~~~~~~~~Dl-vittGG~s~G~~D~~~ 95 (489)
+.+.+++++++ ..+ |+...-...+..|+..
T Consensus 151 ~~~~~~~~~~~-~G~~vv~~~~~~~~~~d~~~ 181 (334)
T cd06327 151 LERDARKVVKA-NGGKVVGSVRHPLGTSDFSS 181 (334)
T ss_pred HHHHHHHHHHh-cCCEEcCcccCCCCCccHHH
Confidence 45555555442 222 1222333444556554
No 477
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=20.05 E-value=3.7e+02 Score=25.65 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=33.1
Q ss_pred HHHHHHHhCCCeEEEEEeecCCHHHHHHHHHHHHhcCCCEEEEeC
Q 011289 40 MLLAAAMQQHCKLIDLGIVRDDEEELEKTLDNAFSAGIDILLTSG 84 (489)
Q Consensus 40 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~~DlvittG 84 (489)
-+...+++.|+.+.....-.++.+...+.++.+.++++|-||...
T Consensus 19 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~ 63 (271)
T cd06314 19 GVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISP 63 (271)
T ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 445667889998776533345777777888887776799999885
No 478
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.04 E-value=4.1e+02 Score=25.41 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=29.1
Q ss_pred HHHHccccccCCcEEEEEEEcCCCHHHHHHHHHHhhhcCCCcEEEEeC
Q 011289 316 SVVNSSSEKLGGAKVVATDVVPDDVGKIKEVLRRWSDIDKMDLILTLG 363 (489)
Q Consensus 316 ~~l~~~~~~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~~~DlVIttG 363 (489)
+.+++. |+++.... ..+|.+...+.++.+.. .++|.||+++
T Consensus 23 ~~~~~~-----g~~v~~~~-~~~~~~~~~~~i~~~~~-~~~Dgiii~~ 63 (282)
T cd06318 23 AHAKAL-----GYELISTD-AQGDLTKQIADVEDLLT-RGVNVLIINP 63 (282)
T ss_pred HHHHHc-----CCEEEEEc-CCCCHHHHHHHHHHHHH-cCCCEEEEec
Confidence 445555 98886543 35577777778888776 6899999865
Done!