BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011290
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QV7|A Chain A, Crystal Structure Of Diacylglycerol Kinase Dgkb In Complex
With Adp And Mg
pdb|2QVL|A Chain A, Crystal Structure Of Diacylglycerol Kinase
Length = 337
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 65/157 (41%), Gaps = 20/157 (12%)
Query: 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDG 169
KR I NP GK+ K L D LE A + + T + A + YD
Sbjct: 25 KRARIIYNPTSGKE-QFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAXHENYDV 83
Query: 170 IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCK 229
++ GDG L EVVNG+ E+ + + LGV+P GT N ++L P
Sbjct: 84 LIAAGGDGTLNEVVNGIAEKPN-----RPKLGVIP-----XGTVNDFGRALHI----PND 129
Query: 230 ASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWG 266
A+ +I GH +D+ GK + LA G
Sbjct: 130 IXGALDVIIEGHSTKVDI-----GKXNNRYFINLAAG 161
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 382 PDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKA 429
PDAK DGY LII++ L + + ++G H + P V Y K KA
Sbjct: 232 PDAKLDDGYFTLIIVEKSNLAELGHIXTLASRGEHTKHPKVIYEKAKA 279
>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|B Chain B, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|C Chain C, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|D Chain D, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|E Chain E, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|F Chain F, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|G Chain G, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|H Chain H, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|I Chain I, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|J Chain J, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|K Chain K, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|L Chain L, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
Length = 306
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 30/185 (16%)
Query: 110 KRLYIFVNPFGGKKIASKIFLDDVKPL---LEDANIQFTVQETTQQLHAKEIVKVLDLSK 166
+++ + VNP G+ V PL D +I T ++ + +E SK
Sbjct: 13 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA-----SK 67
Query: 167 YDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGE 226
D I+ GDG + E NGL E I+ L ++P GT N ++L G
Sbjct: 68 VDLIIVFGGDGTVFECTNGLAPLE-----IRPTLAIIP-----GGTCNDFSRTL----GV 113
Query: 227 PCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI--DIESEKYRWMGSA 284
P + A + + H + +DVA G+ H + GLV+++ +I++E+ +G
Sbjct: 114 PQNIAEAAKLITKEHVKPVDVAK-ANGQ---HFLNFWGIGLVSEVSNNIDAEEKAKLG-- 167
Query: 285 RIDFY 289
+I +Y
Sbjct: 168 KIGYY 172
>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|B Chain B, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|C Chain C, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|D Chain D, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
Length = 304
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 30/185 (16%)
Query: 110 KRLYIFVNPFGGKKIASKIFLDDVKPL---LEDANIQFTVQETTQQLHAKEIVKVLDLSK 166
+++ + VNP G+ V PL D +I T ++ + +E SK
Sbjct: 9 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA-----SK 63
Query: 167 YDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGE 226
D I+ GDG + E NGL E I+ L ++P GT N ++L G
Sbjct: 64 VDLIIVFGGDGTVFECTNGLAPLE-----IRPTLAIIP-----GGTCNDFSRTL----GV 109
Query: 227 PCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI--DIESEKYRWMGSA 284
P + A + + H + +DVA G+ H + GLV+++ +I++E+ +G
Sbjct: 110 PQNIAEAAKLITKEHVKPVDVAK-ANGQ---HFLNFWGIGLVSEVSNNIDAEEKAKLG-- 163
Query: 285 RIDFY 289
+I +Y
Sbjct: 164 KIGYY 168
>pdb|2HII|C Chain C, Heterotrimeric Pcna Sliding Clamp
pdb|2HII|Z Chain Z, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|C Chain C, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|N Chain N, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|Z Chain Z, Heterotrimeric Pcna Sliding Clamp
Length = 252
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 33 TDGHQRSLTLEKQVL-GFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDS 91
+DG + +++ V VVEG + RI +G E+ + +D F S++S
Sbjct: 136 SDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNS 195
Query: 92 KR-------LWCEKLRDFID-SFGRPKRLYIFVNPFGGKKIA 125
L KL D++ SFG K L +F N GG K+
Sbjct: 196 YSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNXEGGGKVT 237
>pdb|2IJX|A Chain A, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2IJX|B Chain B, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2IJX|C Chain C, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2IJX|D Chain D, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2NTI|F Chain F, Crystal Structure Of Pcna123 Heterotrimer.
pdb|2NTI|C Chain C, Crystal Structure Of Pcna123 Heterotrimer.
pdb|2NTI|I Chain I, Crystal Structure Of Pcna123 Heterotrimer
Length = 244
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 33 TDGHQRSLTLEKQVL-GFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDS 91
+DG + +++ V VVEG + RI +G E+ + +D F S++S
Sbjct: 136 SDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNS 195
Query: 92 KR-------LWCEKLRDFID-SFGRPKRLYIFVNPFGGKKIA 125
L KL D++ SFG K L +F N GG K+
Sbjct: 196 YSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVT 237
>pdb|2IX2|C Chain C, Crystal Structure Of The Heterotrimeric Pcna From
Sulfolobus Solfataricus
Length = 259
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 33 TDGHQRSLTLEKQVL-GFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDS 91
+DG + +++ V VVEG + RI +G E+ + +D F S++S
Sbjct: 151 SDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNS 210
Query: 92 KR-------LWCEKLRDFID-SFGRPKRLYIFVNPFGGKKIA 125
L KL D++ SFG K L +F N GG K+
Sbjct: 211 YSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVT 252
>pdb|3PF2|A Chain A, The Crystal Structure Of The Major Pilin Gbs80 Of
Streptococcus Agalactiae 35kda C-Terminal Fragment
pdb|3PG2|A Chain A, The Crystal Structure Of The Major Pilin Gbs80 Of
Streptococcus Agalactiae 35 Kda C-Terminal Fragment
pdb|3PG2|B Chain B, The Crystal Structure Of The Major Pilin Gbs80 Of
Streptococcus Agalactiae 35 Kda C-Terminal Fragment
Length = 319
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 24 LTGDGR-LRWTDGHQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEI 68
L DG ++WTD ++ T + + G V G I++++ DG EI
Sbjct: 205 LASDGTAVKWTDALIKANTNKNYIAGEAVTGQPIKLKSHTDGTFEI 250
>pdb|1RS8|A Chain A, Bovine Endothelial Nos Heme Domain With
D-Lysine-D-Nitroarginine Amide Bound
pdb|1RS8|B Chain B, Bovine Endothelial Nos Heme Domain With
D-Lysine-D-Nitroarginine Amide Bound
pdb|1RS9|A Chain A, Bovine Endothelial Nos Heme Domain With D-Phenylalanine-D-
Nitroarginine Amide Bound
pdb|1RS9|B Chain B, Bovine Endothelial Nos Heme Domain With D-Phenylalanine-D-
Nitroarginine Amide Bound
pdb|2G6O|A Chain A, Structure Of Bovine Enos Heme Domain (Bh4-Free) Complexed
With Co
pdb|2G6O|B Chain B, Structure Of Bovine Enos Heme Domain (Bh4-Free) Complexed
With Co
pdb|2HX2|A Chain A, Bovine Enos Heme Domain Complexed With
(4s)-N-{4-Amino-5-[(2-
Aminoethyl)-Hydroxyamino]-Pentyl}-N'-Nitroguanidine
pdb|2HX2|B Chain B, Bovine Enos Heme Domain Complexed With
(4s)-N-{4-Amino-5-[(2-
Aminoethyl)-Hydroxyamino]-Pentyl}-N'-Nitroguanidine
pdb|3DQS|A Chain A, Structure Of Endothelial Nos Heme Domain In Complex With A
Inhibitor
(+-)-N1-{cis-4'-[(6"-Amino-4"-Methylpyridin-2"-
Yl)methyl]pyrrolidin-
3'-Yl}-N2-(4'-Chlorobenzyl)ethane-1,2-Diamine
pdb|3DQS|B Chain B, Structure Of Endothelial Nos Heme Domain In Complex With A
Inhibitor
(+-)-N1-{cis-4'-[(6"-Amino-4"-Methylpyridin-2"-
Yl)methyl]pyrrolidin-
3'-Yl}-N2-(4'-Chlorobenzyl)ethane-1,2-Diamine
pdb|3DQT|A Chain A, Structure Of Endothelial Nos Heme Domain In Complex With A
Inhibitor
(+-)-N1-{trans-4'-[(6"-Amino-4"-Methylpyridin-2"-Yl)
Methyl]pyrrolidin-3'-Yl}-N2-(3'-Chlorobenzyl)ethane-1,
2-Diamine
pdb|3DQT|B Chain B, Structure Of Endothelial Nos Heme Domain In Complex With A
Inhibitor
(+-)-N1-{trans-4'-[(6"-Amino-4"-Methylpyridin-2"-Yl)
Methyl]pyrrolidin-3'-Yl}-N2-(3'-Chlorobenzyl)ethane-1,
2-Diamine
pdb|3PNH|A Chain A, Structure Of Bovine Endothelial Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((2-Fluoro-2-(3-Fluorophenyl) Ethyl)
Amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-
Amine
pdb|3PNH|B Chain B, Structure Of Bovine Endothelial Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((2-Fluoro-2-(3-Fluorophenyl) Ethyl)
Amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-
Amine
Length = 416
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 240 GHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQ 299
G+ R + +LQ + +L LV ++ +E W + + +YAL + +
Sbjct: 218 GNGRFDVLPLLLQAPDEAPELFVLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLL 277
Query: 300 YNGRVSFVPAPGFENHGEPSTYSEQNICNP 329
G + F AP F + +N+C+P
Sbjct: 278 EIGGLEFSAAP-FSGWYMSTEIGTRNLCDP 306
>pdb|1P6L|A Chain A, Bovine Endothelial Nos Heme Domain With
L-N(Omega)-Nitroarginine-2,4- L-Diaminobutyric Amide
Bound
pdb|1P6L|B Chain B, Bovine Endothelial Nos Heme Domain With
L-N(Omega)-Nitroarginine-2,4- L-Diaminobutyric Amide
Bound
pdb|1P6M|A Chain A, Bovine Endothelial Nos Heme Domain With (4s)-N-(4-Amino-5-
[aminoethyl]aminopentyl)-N'-Nitroguanidine Bound
pdb|1P6M|B Chain B, Bovine Endothelial Nos Heme Domain With (4s)-N-(4-Amino-5-
[aminoethyl]aminopentyl)-N'-Nitroguanidine Bound
pdb|1P6N|A Chain A, Bovine Endothelial Nos Heme Domain With
L-N(Omega)-Nitroarginine-(4r)- Amino-L-Proline Amide
Bound
pdb|1P6N|B Chain B, Bovine Endothelial Nos Heme Domain With
L-N(Omega)-Nitroarginine-(4r)- Amino-L-Proline Amide
Bound
Length = 417
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 240 GHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQ 299
G+ R + +LQ + +L LV ++ +E W + + +YAL + +
Sbjct: 218 GNGRFDVLPLLLQAPDEAPELFVLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLL 277
Query: 300 YNGRVSFVPAPGFENHGEPSTYSEQNICNP 329
G + F AP F + +N+C+P
Sbjct: 278 EIGGLEFSAAP-FSGWYMSTEIGTRNLCDP 306
>pdb|3E7S|A Chain A, Structure Of Bovine Enos Oxygenase Domain With Inhibitor
Ar- C95791
Length = 431
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 240 GHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQ 299
G+ R + +LQ + +L LV ++ +E W + + +YAL + +
Sbjct: 228 GNGRFDVLPLLLQAPDEAPELFVLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLL 287
Query: 300 YNGRVSFVPAPGFENHGEPSTYSEQNICNP 329
G + F AP F + +N+C+P
Sbjct: 288 EIGGLEFSAAP-FSGWYMSTEIGTRNLCDP 316
>pdb|3E7S|B Chain B, Structure Of Bovine Enos Oxygenase Domain With Inhibitor
Ar- C95791
Length = 431
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 240 GHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQ 299
G+ R + +LQ + +L LV ++ +E W + + +YAL + +
Sbjct: 228 GNGRFDVLPLLLQAPDEAPELFVLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLL 287
Query: 300 YNGRVSFVPAPGFENHGEPSTYSEQNICNP 329
G + F AP F + +N+C+P
Sbjct: 288 EIGGLEFSAAP-FSGWYMSTEIGTRNLCDP 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,443,030
Number of Sequences: 62578
Number of extensions: 699266
Number of successful extensions: 1320
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1313
Number of HSP's gapped (non-prelim): 25
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)