Query 011290
Match_columns 489
No_of_seqs 240 out of 1464
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 23:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02958 diacylglycerol kinase 100.0 6.8E-94 1.5E-98 761.8 52.9 479 1-489 3-481 (481)
2 KOG1116 Sphingosine kinase, in 100.0 9.9E-69 2.2E-73 556.3 28.8 358 104-488 174-566 (579)
3 PLN02204 diacylglycerol kinase 100.0 9.1E-66 2E-70 544.6 42.9 450 5-488 17-597 (601)
4 KOG1115 Ceramide kinase [Lipid 100.0 4.6E-64 9.9E-69 496.0 25.2 366 74-487 122-507 (516)
5 PRK11914 diacylglycerol kinase 100.0 2.6E-50 5.6E-55 407.7 31.8 291 109-472 8-302 (306)
6 PRK13337 putative lipid kinase 100.0 1.1E-48 2.3E-53 395.5 29.0 291 109-473 1-293 (304)
7 PRK13059 putative lipid kinase 100.0 3.2E-48 6.9E-53 390.3 31.4 289 109-473 1-292 (295)
8 PRK13055 putative lipid kinase 100.0 4.7E-48 1E-52 395.4 30.3 294 109-473 2-300 (334)
9 PRK13057 putative lipid kinase 100.0 3.9E-47 8.5E-52 381.1 30.5 281 113-472 1-283 (287)
10 PRK00861 putative lipid kinase 100.0 4.2E-47 9.2E-52 383.2 27.6 288 109-473 2-296 (300)
11 COG1597 LCB5 Sphingosine kinas 100.0 2.4E-46 5.1E-51 376.6 27.3 292 108-473 1-295 (301)
12 PRK13054 lipid kinase; Reviewe 100.0 1E-45 2.2E-50 373.2 29.0 290 108-473 2-293 (300)
13 TIGR03702 lip_kinase_YegS lipi 100.0 1.4E-45 3.1E-50 370.8 29.3 285 111-473 1-287 (293)
14 TIGR00147 lipid kinase, YegS/R 100.0 2.4E-45 5.2E-50 369.1 30.5 287 109-469 1-290 (293)
15 PRK12361 hypothetical protein; 100.0 2.5E-39 5.4E-44 351.6 29.7 292 107-473 240-541 (547)
16 PF00781 DAGK_cat: Diacylglyce 99.9 4E-25 8.6E-30 196.0 11.3 127 111-252 1-129 (130)
17 KOG4435 Predicted lipid kinase 99.9 1.3E-23 2.9E-28 208.6 11.6 189 105-307 56-253 (535)
18 KOG1169 Diacylglycerol kinase 99.9 1.8E-22 3.9E-27 213.9 16.1 294 109-466 271-611 (634)
19 smart00046 DAGKc Diacylglycero 99.8 2E-20 4.4E-25 164.6 7.9 108 113-238 1-110 (124)
20 KOG0782 Predicted diacylglycer 99.8 8.8E-19 1.9E-23 180.1 13.4 284 107-462 363-684 (1004)
21 smart00045 DAGKa Diacylglycero 99.4 9.4E-13 2E-17 121.0 7.4 133 261-453 4-160 (160)
22 PRK03708 ppnK inorganic polyph 98.9 9.6E-09 2.1E-13 102.5 11.0 112 110-243 1-115 (277)
23 PRK02645 ppnK inorganic polyph 98.7 6.6E-08 1.4E-12 97.9 10.6 117 108-243 2-118 (305)
24 PF00609 DAGK_acc: Diacylglyce 98.6 2.6E-07 5.7E-12 85.0 10.0 134 261-453 4-161 (161)
25 COG3199 Predicted inorganic po 98.2 6.1E-06 1.3E-10 82.8 10.2 73 150-240 84-157 (355)
26 PRK01231 ppnK inorganic polyph 98.1 1.2E-05 2.5E-10 81.2 10.0 113 109-242 4-120 (295)
27 PRK03378 ppnK inorganic polyph 98.0 3.9E-05 8.5E-10 77.3 10.0 110 108-242 4-121 (292)
28 PRK14075 pnk inorganic polypho 97.9 0.0011 2.4E-08 65.6 19.8 96 111-243 2-97 (256)
29 KOG1170 Diacylglycerol kinase 97.6 1.2E-05 2.5E-10 87.5 0.2 128 109-250 194-323 (1099)
30 PRK03372 ppnK inorganic polyph 97.6 0.00024 5.3E-09 71.9 9.6 115 107-243 3-131 (306)
31 PRK02155 ppnK NAD(+)/NADH kina 97.6 0.00036 7.7E-09 70.4 10.5 113 109-243 5-122 (291)
32 PF01513 NAD_kinase: ATP-NAD k 97.6 6.1E-05 1.3E-09 75.7 4.3 115 111-246 1-138 (285)
33 PRK04539 ppnK inorganic polyph 97.3 0.0014 3E-08 66.2 10.7 113 108-242 4-126 (296)
34 KOG1170 Diacylglycerol kinase 97.3 0.00045 9.8E-09 75.6 7.2 151 255-465 611-783 (1099)
35 PRK14077 pnk inorganic polypho 97.3 0.0015 3.4E-08 65.6 10.3 113 107-242 8-122 (287)
36 PRK02649 ppnK inorganic polyph 97.3 0.0018 4E-08 65.6 10.5 112 109-242 1-126 (305)
37 PRK14076 pnk inorganic polypho 97.2 0.0028 6E-08 69.8 12.0 116 106-243 287-407 (569)
38 PRK01911 ppnK inorganic polyph 97.1 0.0036 7.8E-08 63.1 10.3 111 111-243 2-123 (292)
39 PLN02935 Bifunctional NADH kin 97.0 0.0051 1.1E-07 65.7 10.8 117 105-243 190-321 (508)
40 PRK03501 ppnK inorganic polyph 96.9 0.0058 1.3E-07 60.7 10.3 96 110-242 3-99 (264)
41 PLN02727 NAD kinase 96.9 0.0048 1E-07 69.7 10.0 113 105-242 674-801 (986)
42 PRK04885 ppnK inorganic polyph 96.8 0.0063 1.4E-07 60.5 9.7 95 111-243 2-96 (265)
43 PLN02929 NADH kinase 96.2 0.023 5E-07 57.4 9.2 96 130-246 36-143 (301)
44 PF11711 Tim54: Inner membrane 96.1 0.028 6.1E-07 58.4 9.1 66 91-156 45-116 (382)
45 PRK00561 ppnK inorganic polyph 96.0 0.084 1.8E-06 52.3 12.0 99 111-251 2-101 (259)
46 PF13685 Fe-ADH_2: Iron-contai 95.7 0.038 8.2E-07 54.5 8.0 104 99-219 10-117 (250)
47 PRK01185 ppnK inorganic polyph 95.7 0.048 1E-06 54.4 8.8 105 111-242 2-107 (271)
48 cd08549 G1PDH_related Glycerol 95.3 0.19 4.1E-06 51.7 12.0 91 103-206 18-113 (332)
49 cd08181 PPD-like 1,3-propanedi 94.9 0.27 5.9E-06 51.0 11.6 102 110-218 26-142 (357)
50 cd08550 GlyDH-like Glycerol_de 94.8 0.21 4.6E-06 51.6 10.7 97 101-214 16-115 (349)
51 cd08194 Fe-ADH6 Iron-containin 94.8 0.31 6.8E-06 50.9 11.9 100 110-217 24-139 (375)
52 cd08191 HHD 6-hydroxyhexanoate 94.7 0.37 8E-06 50.6 12.3 108 101-218 16-139 (386)
53 cd08186 Fe-ADH8 Iron-containin 94.7 0.3 6.6E-06 51.2 11.5 103 109-218 26-145 (383)
54 PRK09423 gldA glycerol dehydro 94.4 0.28 6.1E-06 51.1 10.5 92 110-216 30-124 (366)
55 cd08171 GlyDH-like2 Glycerol d 94.3 0.32 7E-06 50.2 10.6 84 110-205 23-110 (345)
56 KOG4180 Predicted kinase [Gene 94.3 0.053 1.2E-06 54.3 4.4 99 124-245 71-171 (395)
57 cd08183 Fe-ADH2 Iron-containin 94.3 0.46 1E-05 49.6 11.8 97 110-217 23-138 (374)
58 PRK02231 ppnK inorganic polyph 94.2 0.3 6.6E-06 48.8 9.8 92 131-242 3-101 (272)
59 cd08176 LPO Lactadehyde:propan 94.2 0.47 1E-05 49.6 11.6 100 110-217 29-144 (377)
60 PRK00843 egsA NAD(P)-dependent 94.2 0.65 1.4E-05 48.1 12.4 85 109-206 34-120 (350)
61 cd08170 GlyDH Glycerol dehydro 94.0 0.33 7.3E-06 50.2 10.1 92 110-216 23-117 (351)
62 PRK04761 ppnK inorganic polyph 94.0 0.39 8.4E-06 47.3 9.9 60 165-241 24-83 (246)
63 PRK10624 L-1,2-propanediol oxi 93.9 0.66 1.4E-05 48.6 12.2 101 110-218 31-149 (382)
64 cd08190 HOT Hydroxyacid-oxoaci 93.9 0.66 1.4E-05 49.2 12.2 99 110-216 24-144 (414)
65 cd08172 GlyDH-like1 Glycerol d 93.8 0.33 7.1E-06 50.2 9.5 93 110-217 24-117 (347)
66 cd08173 Gro1PDH Sn-glycerol-1- 93.7 0.91 2E-05 46.7 12.5 83 110-205 26-110 (339)
67 cd08187 BDH Butanol dehydrogen 93.6 0.49 1.1E-05 49.6 10.5 101 110-217 29-145 (382)
68 cd08195 DHQS Dehydroquinate sy 93.4 0.74 1.6E-05 47.5 11.3 90 107-206 22-120 (345)
69 TIGR02638 lactal_redase lactal 93.4 0.67 1.5E-05 48.5 11.0 100 110-217 30-147 (379)
70 cd08192 Fe-ADH7 Iron-containin 92.9 0.88 1.9E-05 47.4 11.1 97 110-214 25-141 (370)
71 cd08182 HEPD Hydroxyethylphosp 92.8 1.2 2.6E-05 46.3 11.9 96 110-216 24-139 (367)
72 cd08551 Fe-ADH iron-containing 92.8 0.91 2E-05 47.3 11.0 97 110-214 24-136 (370)
73 cd08175 G1PDH Glycerol-1-phosp 92.8 0.91 2E-05 46.9 10.8 83 110-205 24-112 (348)
74 cd08188 Fe-ADH4 Iron-containin 92.6 1.5 3.3E-05 45.8 12.4 101 110-218 29-145 (377)
75 cd08193 HVD 5-hydroxyvalerate 92.6 1.2 2.6E-05 46.6 11.5 99 110-216 27-141 (376)
76 PRK10586 putative oxidoreducta 92.5 0.99 2.2E-05 47.0 10.8 93 99-205 25-118 (362)
77 cd07766 DHQ_Fe-ADH Dehydroquin 92.4 1.2 2.7E-05 45.5 11.2 91 109-213 23-117 (332)
78 cd08174 G1PDH-like Glycerol-1- 92.4 1.3 2.7E-05 45.5 11.2 80 110-205 26-107 (331)
79 cd08199 EEVS 2-epi-5-epi-valio 92.2 1 2.2E-05 46.8 10.3 90 107-206 24-123 (354)
80 COG1454 EutG Alcohol dehydroge 92.2 2.1 4.5E-05 44.8 12.4 125 80-220 8-148 (377)
81 PRK09860 putative alcohol dehy 92.1 1.5 3.3E-05 46.0 11.6 101 110-218 32-148 (383)
82 PRK00002 aroB 3-dehydroquinate 91.9 1.7 3.7E-05 45.1 11.7 88 109-206 31-127 (358)
83 cd08197 DOIS 2-deoxy-scyllo-in 91.9 2.1 4.5E-05 44.5 12.2 86 110-205 24-118 (355)
84 COG0061 nadF NAD kinase [Coenz 91.7 1.1 2.5E-05 44.9 9.7 111 111-243 2-114 (281)
85 cd08178 AAD_C C-terminal alcoh 91.3 1.5 3.3E-05 46.2 10.6 102 109-218 21-149 (398)
86 TIGR01357 aroB 3-dehydroquinat 91.3 1.9 4.1E-05 44.5 11.2 88 109-206 20-116 (344)
87 KOG2178 Predicted sugar kinase 91.1 0.21 4.6E-06 51.5 3.8 113 107-241 91-225 (409)
88 cd08169 DHQ-like Dehydroquinat 91.1 2.5 5.5E-05 43.7 11.8 88 109-206 23-118 (344)
89 cd08185 Fe-ADH1 Iron-containin 90.6 3.2 7E-05 43.4 12.3 102 110-218 26-148 (380)
90 cd08184 Fe-ADH3 Iron-containin 90.4 3.8 8.2E-05 42.5 12.4 108 99-218 14-141 (347)
91 PRK15454 ethanol dehydrogenase 89.1 4.9 0.00011 42.4 12.2 101 110-218 50-166 (395)
92 PF00465 Fe-ADH: Iron-containi 88.9 1.5 3.3E-05 45.5 8.2 99 111-216 23-137 (366)
93 cd08179 NADPH_BDH NADPH-depend 88.6 2.9 6.2E-05 43.7 10.0 101 110-217 24-143 (375)
94 cd08189 Fe-ADH5 Iron-containin 88.4 6 0.00013 41.3 12.2 100 110-217 27-143 (374)
95 cd08180 PDD 1,3-propanediol de 88.0 3.5 7.7E-05 42.2 10.1 95 110-215 23-124 (332)
96 COG0371 GldA Glycerol dehydrog 85.7 4.6 9.9E-05 41.9 9.3 92 101-205 23-116 (360)
97 cd08198 DHQS-like2 Dehydroquin 85.2 5.6 0.00012 41.6 9.7 92 108-206 29-134 (369)
98 PLN02834 3-dehydroquinate synt 85.0 5.2 0.00011 42.8 9.6 84 109-205 100-197 (433)
99 PRK06203 aroB 3-dehydroquinate 84.2 4.7 0.0001 42.4 8.8 91 109-206 42-146 (389)
100 cd08177 MAR Maleylacetate redu 80.8 5.7 0.00012 40.8 7.8 83 110-206 24-110 (337)
101 cd06167 LabA_like LabA_like pr 80.0 27 0.00058 30.9 11.0 76 108-189 38-122 (149)
102 PTZ00286 6-phospho-1-fructokin 79.6 4.6 0.0001 43.4 6.8 114 110-237 120-239 (459)
103 TIGR02483 PFK_mixed phosphofru 79.2 4.7 0.0001 41.4 6.4 53 153-218 81-133 (324)
104 PRK11780 isoprenoid biosynthes 78.5 8.7 0.00019 37.1 7.7 19 160-178 79-97 (217)
105 cd00764 Eukaryotic_PFK Phospho 77.8 16 0.00034 41.9 10.5 104 109-218 419-524 (762)
106 PRK14021 bifunctional shikimat 77.6 17 0.00037 40.0 10.7 86 110-206 210-304 (542)
107 TIGR00288 conserved hypothetic 76.7 22 0.00047 32.7 9.3 83 96-189 43-128 (160)
108 PRK05282 (alpha)-aspartyl dipe 76.2 13 0.00029 36.2 8.4 75 92-178 17-91 (233)
109 PRK06703 flavodoxin; Provision 75.2 11 0.00023 33.8 7.0 86 110-205 2-90 (151)
110 PRK15138 aldehyde reductase; P 75.2 21 0.00046 37.5 10.2 100 110-218 30-148 (387)
111 PLN02564 6-phosphofructokinase 75.2 6.4 0.00014 42.5 6.3 96 110-218 120-221 (484)
112 TIGR03405 Phn_Fe-ADH phosphona 75.1 11 0.00023 39.1 7.9 99 110-218 24-144 (355)
113 PRK06830 diphosphate--fructose 74.9 6.5 0.00014 42.1 6.2 117 110-237 113-235 (443)
114 PRK06756 flavodoxin; Provision 74.2 11 0.00025 33.5 6.9 85 110-203 2-89 (148)
115 PF03575 Peptidase_S51: Peptid 73.7 4.1 8.8E-05 36.8 3.8 47 129-178 1-47 (154)
116 cd06295 PBP1_CelR Ligand bindi 73.1 31 0.00068 33.3 10.3 66 131-205 30-95 (275)
117 cd00763 Bacterial_PFK Phosphof 72.9 14 0.00031 37.8 7.9 93 110-218 31-131 (317)
118 TIGR02482 PFKA_ATP 6-phosphofr 72.2 11 0.00024 38.2 6.9 93 111-218 31-131 (301)
119 cd01536 PBP1_ABC_sugar_binding 71.3 22 0.00048 33.7 8.7 68 131-205 19-88 (267)
120 PRK03202 6-phosphofructokinase 70.5 15 0.00032 37.7 7.4 95 111-218 33-132 (320)
121 PRK14071 6-phosphofructokinase 70.3 11 0.00023 39.4 6.5 53 154-218 95-147 (360)
122 PF00731 AIRC: AIR carboxylase 70.1 25 0.00054 31.9 8.0 61 129-189 15-79 (150)
123 cd08196 DHQS-like1 Dehydroquin 69.5 24 0.00051 36.6 8.8 84 110-208 20-113 (346)
124 cd07025 Peptidase_S66 LD-Carbo 67.2 14 0.0003 37.1 6.3 64 114-179 2-76 (282)
125 cd00363 PFK Phosphofructokinas 67.1 13 0.00028 38.4 6.2 54 154-217 80-136 (338)
126 PRK04155 chaperone protein Hch 66.7 36 0.00078 34.3 9.2 17 164-180 145-161 (287)
127 PRK06555 pyrophosphate--fructo 66.4 20 0.00044 37.9 7.5 59 153-218 99-157 (403)
128 PF10254 Pacs-1: PACS-1 cytoso 66.3 26 0.00055 37.1 8.2 108 97-221 3-127 (414)
129 cd06268 PBP1_ABC_transporter_L 66.0 74 0.0016 30.4 11.3 94 88-189 118-213 (298)
130 PF01936 NYN: NYN domain; Int 65.2 19 0.00042 31.4 6.3 59 131-189 50-118 (146)
131 PF04392 ABC_sub_bind: ABC tra 65.0 32 0.00068 34.4 8.5 91 90-188 115-205 (294)
132 PRK13805 bifunctional acetalde 64.8 60 0.0013 37.9 11.8 73 109-186 480-558 (862)
133 KOG3857 Alcohol dehydrogenase, 64.0 28 0.0006 35.9 7.6 99 109-218 70-193 (465)
134 PF00763 THF_DHG_CYH: Tetrahyd 63.5 62 0.0014 27.8 9.0 79 90-172 7-93 (117)
135 cd06310 PBP1_ABC_sugar_binding 63.0 37 0.0008 32.7 8.4 66 131-203 19-88 (273)
136 cd03147 GATase1_Ydr533c_like T 61.2 30 0.00065 33.6 7.3 36 163-205 91-135 (231)
137 cd07062 Peptidase_S66_mccF_lik 61.1 21 0.00046 36.2 6.5 66 113-179 3-80 (308)
138 PLN02335 anthranilate synthase 60.6 31 0.00067 33.3 7.2 67 103-182 12-78 (222)
139 PRK07308 flavodoxin; Validated 60.6 33 0.00071 30.4 7.0 62 110-181 2-66 (146)
140 PF00365 PFK: Phosphofructokin 60.5 10 0.00022 38.1 3.9 51 156-218 82-132 (282)
141 cd06305 PBP1_methylthioribose_ 60.4 46 0.00099 31.9 8.6 66 131-203 19-86 (273)
142 PRK05568 flavodoxin; Provision 60.3 20 0.00044 31.4 5.5 67 110-186 2-76 (142)
143 PLN02884 6-phosphofructokinase 60.1 19 0.00041 38.2 6.1 99 110-218 85-188 (411)
144 PRK14072 6-phosphofructokinase 60.1 29 0.00063 36.9 7.5 60 153-219 90-149 (416)
145 TIGR02478 6PF1K_euk 6-phosphof 59.3 30 0.00065 39.7 7.8 100 110-218 420-524 (745)
146 cd00764 Eukaryotic_PFK Phospho 57.6 23 0.00051 40.5 6.5 101 110-218 34-159 (762)
147 cd06282 PBP1_GntR_like_2 Ligan 57.4 74 0.0016 30.2 9.4 66 131-203 19-85 (266)
148 TIGR00237 xseA exodeoxyribonuc 57.0 2.5E+02 0.0054 30.0 14.0 68 108-182 128-203 (432)
149 cd06341 PBP1_ABC_ligand_bindin 56.7 68 0.0015 32.2 9.4 97 84-189 112-211 (341)
150 PF01220 DHquinase_II: Dehydro 56.6 46 0.00099 29.9 6.9 44 129-173 30-73 (140)
151 PRK05637 anthranilate synthase 56.5 49 0.0011 31.6 7.8 60 109-182 1-60 (208)
152 PRK09271 flavodoxin; Provision 55.6 23 0.00049 32.2 5.1 70 111-186 2-74 (160)
153 cd06278 PBP1_LacI_like_2 Ligan 55.5 81 0.0018 29.9 9.4 67 131-205 19-85 (266)
154 PRK11303 DNA-binding transcrip 54.4 92 0.002 31.0 9.9 88 108-204 60-148 (328)
155 TIGR02478 6PF1K_euk 6-phosphof 53.4 24 0.00052 40.4 5.8 101 110-218 31-156 (745)
156 PRK06774 para-aminobenzoate sy 53.3 46 0.001 31.0 6.9 49 129-182 11-59 (191)
157 PF13458 Peripla_BP_6: Peripla 53.2 64 0.0014 32.2 8.5 78 108-189 134-213 (343)
158 PRK10653 D-ribose transporter 53.0 97 0.0021 30.4 9.7 87 110-205 27-115 (295)
159 PRK10014 DNA-binding transcrip 52.6 1.1E+02 0.0024 30.6 10.2 88 107-203 62-150 (342)
160 cd06312 PBP1_ABC_sugar_binding 52.3 81 0.0018 30.4 8.8 66 131-203 20-88 (271)
161 cd06313 PBP1_ABC_sugar_binding 52.2 61 0.0013 31.4 8.0 67 131-204 19-87 (272)
162 cd06289 PBP1_MalI_like Ligand- 51.6 85 0.0018 29.8 8.8 68 129-203 17-85 (268)
163 cd05564 PTS_IIB_chitobiose_lic 51.5 59 0.0013 26.9 6.5 73 121-205 7-79 (96)
164 PRK11104 hemG protoporphyrinog 51.4 18 0.0004 33.5 3.9 83 111-205 2-86 (177)
165 PRK06490 glutamine amidotransf 51.4 18 0.0004 35.3 4.0 61 108-180 6-66 (239)
166 COG3340 PepE Peptidase E [Amin 51.2 47 0.001 32.0 6.5 66 110-181 33-98 (224)
167 cd06349 PBP1_ABC_ligand_bindin 50.8 1E+02 0.0022 31.0 9.6 77 109-189 135-213 (340)
168 cd06304 PBP1_BmpA_like Peripla 50.5 90 0.0019 30.0 8.8 67 131-204 21-87 (260)
169 PRK05569 flavodoxin; Provision 50.1 35 0.00076 29.9 5.3 56 110-175 2-57 (141)
170 TIGR02417 fruct_sucro_rep D-fr 49.8 1.3E+02 0.0029 29.9 10.2 89 107-204 58-147 (327)
171 PRK13869 plasmid-partitioning 49.6 74 0.0016 33.7 8.5 69 88-158 88-167 (405)
172 smart00115 CASc Caspase, inter 49.5 73 0.0016 31.1 7.9 71 107-177 5-84 (241)
173 PRK00286 xseA exodeoxyribonucl 49.4 2.5E+02 0.0055 29.8 12.7 67 109-182 135-208 (438)
174 cd03129 GAT1_Peptidase_E_like 49.3 73 0.0016 30.1 7.7 63 109-177 29-91 (210)
175 cd06318 PBP1_ABC_sugar_binding 49.1 99 0.0021 29.8 8.9 68 131-205 19-88 (282)
176 cd01537 PBP1_Repressors_Sugar_ 48.8 1.2E+02 0.0026 28.3 9.3 70 129-205 17-87 (264)
177 cd03133 GATase1_ES1 Type 1 glu 48.6 25 0.00054 33.9 4.3 19 160-178 76-94 (213)
178 cd06319 PBP1_ABC_sugar_binding 48.5 96 0.0021 29.7 8.7 66 131-203 19-86 (277)
179 cd01538 PBP1_ABC_xylose_bindin 48.4 82 0.0018 30.8 8.3 68 131-205 19-88 (288)
180 cd04509 PBP1_ABC_transporter_G 48.3 1.4E+02 0.0031 28.3 9.9 77 109-189 136-214 (299)
181 cd06300 PBP1_ABC_sugar_binding 48.1 84 0.0018 30.2 8.2 68 131-205 19-93 (272)
182 PF07015 VirC1: VirC1 protein; 48.0 44 0.00094 32.6 5.9 52 110-163 1-52 (231)
183 TIGR00730 conserved hypothetic 47.9 21 0.00046 33.3 3.6 48 151-205 17-65 (178)
184 PTZ00287 6-phosphofructokinase 47.3 64 0.0014 39.3 8.1 85 127-218 885-973 (1419)
185 cd03089 PMM_PGM The phosphoman 47.2 91 0.002 33.2 8.9 78 92-177 146-236 (443)
186 cd06324 PBP1_ABC_sugar_binding 47.2 1.1E+02 0.0025 30.2 9.1 68 131-205 20-90 (305)
187 COG0014 ProA Gamma-glutamyl ph 46.9 46 0.001 35.0 6.2 95 131-249 160-257 (417)
188 cd05802 GlmM GlmM is a bacteri 46.8 68 0.0015 34.1 7.8 80 91-177 150-239 (434)
189 PRK05670 anthranilate synthase 46.6 41 0.00089 31.3 5.5 49 128-181 10-58 (189)
190 TIGR00640 acid_CoA_mut_C methy 46.5 84 0.0018 27.7 7.1 72 113-189 5-76 (132)
191 cd01743 GATase1_Anthranilate_S 46.5 31 0.00067 31.9 4.6 48 129-181 10-57 (184)
192 cd01391 Periplasmic_Binding_Pr 45.8 97 0.0021 28.6 8.0 58 130-187 19-79 (269)
193 cd06299 PBP1_LacI_like_13 Liga 45.8 1.6E+02 0.0034 28.0 9.6 65 131-203 19-84 (265)
194 cd06267 PBP1_LacI_sugar_bindin 45.6 1.4E+02 0.0031 27.8 9.3 69 129-205 17-86 (264)
195 cd00886 MogA_MoaB MogA_MoaB fa 45.6 97 0.0021 27.8 7.6 72 116-187 8-87 (152)
196 cd06333 PBP1_ABC-type_HAAT_lik 45.4 3.1E+02 0.0067 27.0 12.2 78 108-189 132-211 (312)
197 COG1570 XseA Exonuclease VII, 45.1 4.2E+02 0.0091 28.4 13.2 154 11-182 24-209 (440)
198 TIGR03590 PseG pseudaminic aci 44.9 1.4E+02 0.003 29.6 9.3 28 166-205 241-268 (279)
199 cd01988 Na_H_Antiporter_C The 44.8 83 0.0018 26.4 6.8 67 131-203 59-131 (132)
200 PRK05395 3-dehydroquinate dehy 44.7 1.1E+02 0.0025 27.6 7.6 41 131-172 33-73 (146)
201 PLN02285 methionyl-tRNA formyl 44.4 51 0.0011 34.0 6.1 65 109-174 36-101 (334)
202 PF00117 GATase: Glutamine ami 44.3 18 0.0004 33.5 2.7 49 129-181 9-57 (192)
203 cd06320 PBP1_allose_binding Pe 44.2 1.1E+02 0.0023 29.4 8.3 68 131-205 19-90 (275)
204 PRK14324 glmM phosphoglucosami 44.2 80 0.0017 33.8 7.9 81 91-177 155-245 (446)
205 cd01545 PBP1_SalR Ligand-bindi 44.1 1.4E+02 0.0029 28.5 8.9 67 131-204 19-87 (270)
206 PLN02948 phosphoribosylaminoim 44.1 4.6E+02 0.0099 29.2 13.9 116 76-205 372-496 (577)
207 PRK14173 bifunctional 5,10-met 44.0 1.3E+02 0.0027 30.5 8.7 100 89-192 9-116 (287)
208 PRK09542 manB phosphomannomuta 43.9 1.2E+02 0.0025 32.5 9.0 80 91-177 145-237 (445)
209 PRK09590 celB cellobiose phosp 43.8 77 0.0017 26.8 6.1 82 110-205 2-83 (104)
210 cd06296 PBP1_CatR_like Ligand- 43.8 1.7E+02 0.0037 27.9 9.6 65 131-203 19-84 (270)
211 cd03087 PGM_like1 This archaea 43.7 1E+02 0.0022 32.8 8.6 80 91-177 145-236 (439)
212 cd06317 PBP1_ABC_sugar_binding 43.5 1.6E+02 0.0034 28.1 9.3 67 130-203 19-87 (275)
213 cd06273 PBP1_GntR_like_1 This 43.5 1.8E+02 0.0038 27.7 9.6 57 131-188 19-76 (268)
214 PRK06895 putative anthranilate 43.3 55 0.0012 30.5 5.8 54 110-178 2-55 (190)
215 cd03169 GATase1_PfpI_1 Type 1 43.3 35 0.00076 31.3 4.4 34 165-205 75-116 (180)
216 COG0205 PfkA 6-phosphofructoki 43.3 67 0.0015 33.3 6.7 98 109-218 32-134 (347)
217 cd01539 PBP1_GGBP Periplasmic 43.1 1.3E+02 0.0027 29.9 8.7 66 131-203 19-88 (303)
218 TIGR00322 diphth2_R diphthamid 43.0 1.2E+02 0.0027 31.1 8.7 78 92-175 215-292 (332)
219 PRK14317 glmM phosphoglucosami 43.0 1.1E+02 0.0023 33.0 8.7 81 91-177 168-258 (465)
220 PRK14192 bifunctional 5,10-met 42.9 2E+02 0.0043 29.0 9.9 80 89-172 9-97 (283)
221 cd06366 PBP1_GABAb_receptor Li 42.7 2.1E+02 0.0046 28.7 10.5 88 97-189 124-215 (350)
222 cd05805 MPG1_transferase GTP-m 42.2 1E+02 0.0022 32.9 8.3 81 91-177 147-239 (441)
223 CHL00101 trpG anthranilate syn 42.2 78 0.0017 29.6 6.6 48 129-181 11-58 (190)
224 COG4242 CphB Cyanophycinase an 42.1 65 0.0014 31.8 5.9 77 98-177 40-117 (293)
225 cd03132 GATase1_catalase Type 41.9 54 0.0012 28.7 5.2 66 110-180 2-76 (142)
226 PF09419 PGP_phosphatase: Mito 41.8 1.7E+02 0.0038 27.0 8.6 88 90-185 62-153 (168)
227 cd06345 PBP1_ABC_ligand_bindin 41.7 2.9E+02 0.0062 27.8 11.2 79 107-189 142-222 (344)
228 TIGR01737 FGAM_synth_I phospho 41.6 1.4E+02 0.003 28.8 8.4 50 110-176 1-50 (227)
229 TIGR00725 conserved hypothetic 41.4 36 0.00078 31.1 4.1 48 151-205 16-63 (159)
230 PRK06718 precorrin-2 dehydroge 41.2 1.1E+02 0.0025 28.9 7.6 25 163-187 67-91 (202)
231 cd06352 PBP1_NPR_GC_like Ligan 41.0 1.8E+02 0.0039 29.8 9.7 102 81-189 112-217 (389)
232 TIGR02069 cyanophycinase cyano 40.5 93 0.002 30.6 7.1 45 130-176 45-92 (250)
233 cd06301 PBP1_rhizopine_binding 40.2 1.4E+02 0.0031 28.5 8.4 67 131-204 19-88 (272)
234 TIGR01754 flav_RNR ribonucleot 40.2 58 0.0013 28.6 5.1 70 111-188 2-75 (140)
235 cd06323 PBP1_ribose_binding Pe 40.0 1.3E+02 0.0028 28.6 8.0 66 131-203 19-86 (268)
236 PRK11253 ldcA L,D-carboxypepti 40.0 59 0.0013 33.0 5.7 64 113-179 4-80 (305)
237 cd00765 Pyrophosphate_PFK Phos 39.8 70 0.0015 35.3 6.6 105 108-219 103-212 (550)
238 PRK14315 glmM phosphoglucosami 39.7 1.1E+02 0.0023 32.8 8.0 80 92-177 157-246 (448)
239 PF03358 FMN_red: NADPH-depend 39.6 92 0.002 27.4 6.4 40 111-151 2-41 (152)
240 TIGR01455 glmM phosphoglucosam 39.6 1.2E+02 0.0026 32.4 8.3 51 91-147 152-202 (443)
241 PRK13015 3-dehydroquinate dehy 39.4 93 0.002 28.1 6.2 42 130-172 32-73 (146)
242 cd06315 PBP1_ABC_sugar_binding 39.2 1.9E+02 0.0041 28.0 9.2 66 131-203 20-87 (280)
243 PF06506 PrpR_N: Propionate ca 39.2 3.1E+02 0.0066 25.1 10.1 65 108-184 76-140 (176)
244 PF00532 Peripla_BP_1: Peripla 39.2 1.7E+02 0.0038 28.8 9.0 85 111-205 3-87 (279)
245 PRK14188 bifunctional 5,10-met 39.0 2.1E+02 0.0045 29.0 9.4 100 90-193 9-120 (296)
246 TIGR02477 PFKA_PPi diphosphate 38.9 40 0.00087 37.1 4.6 102 108-218 98-206 (539)
247 PRK14189 bifunctional 5,10-met 38.9 2.6E+02 0.0055 28.3 9.9 99 89-191 9-118 (285)
248 TIGR01162 purE phosphoribosyla 38.6 2E+02 0.0043 26.3 8.3 68 129-205 13-84 (156)
249 COG4635 HemG Flavodoxin [Energ 38.4 51 0.0011 30.3 4.3 85 110-205 1-87 (175)
250 PLN03028 pyrophosphate--fructo 38.1 71 0.0015 35.7 6.4 99 109-217 111-217 (610)
251 PRK15395 methyl-galactoside AB 38.1 2.2E+02 0.0047 28.7 9.7 90 107-205 22-114 (330)
252 cd06281 PBP1_LacI_like_5 Ligan 38.1 1.8E+02 0.0038 27.9 8.7 68 131-205 19-87 (269)
253 PRK07765 para-aminobenzoate sy 37.8 2.1E+02 0.0045 27.4 8.9 48 131-181 14-61 (214)
254 cd01744 GATase1_CPSase Small c 37.6 1.1E+02 0.0024 28.0 6.8 43 133-181 12-54 (178)
255 cd06335 PBP1_ABC_ligand_bindin 37.5 3.3E+02 0.0071 27.5 10.9 77 109-189 138-216 (347)
256 PF05893 LuxC: Acyl-CoA reduct 37.4 40 0.00087 35.6 4.2 52 153-205 156-208 (399)
257 PRK07085 diphosphate--fructose 37.4 46 0.001 36.7 4.8 105 107-218 100-209 (555)
258 cd06342 PBP1_ABC_LIVBP_like Ty 37.4 2.3E+02 0.0051 28.0 9.7 78 108-189 134-213 (334)
259 PF13407 Peripla_BP_4: Peripla 37.3 1.7E+02 0.0038 27.7 8.5 83 115-205 3-88 (257)
260 cd06270 PBP1_GalS_like Ligand 37.3 2.6E+02 0.0057 26.6 9.8 67 131-205 19-86 (268)
261 cd06322 PBP1_ABC_sugar_binding 37.3 1.6E+02 0.0034 28.1 8.1 69 130-205 18-88 (267)
262 KOG0333 U5 snRNP-like RNA heli 37.1 2E+02 0.0043 31.6 9.1 84 76-172 489-573 (673)
263 PRK01175 phosphoribosylformylg 36.8 64 0.0014 32.0 5.3 54 110-175 4-57 (261)
264 cd06386 PBP1_NPR_C_like Ligand 36.6 2.3E+02 0.0051 29.3 9.8 79 108-188 136-216 (387)
265 cd06360 PBP1_alkylbenzenes_lik 36.5 2.8E+02 0.0061 27.5 10.2 77 109-189 134-212 (336)
266 cd06309 PBP1_YtfQ_like Peripla 36.5 1.4E+02 0.0029 28.8 7.6 66 131-203 19-86 (273)
267 cd01542 PBP1_TreR_like Ligand- 36.3 2.1E+02 0.0045 27.0 8.8 58 130-188 18-76 (259)
268 cd03146 GAT1_Peptidase_E Type 36.1 1E+02 0.0022 29.3 6.5 80 98-188 19-100 (212)
269 PRK10355 xylF D-xylose transpo 36.1 2.2E+02 0.0048 28.8 9.3 66 131-203 45-112 (330)
270 PRK10703 DNA-binding transcrip 36.1 2.8E+02 0.006 27.7 10.1 87 110-205 60-147 (341)
271 cd06334 PBP1_ABC_ligand_bindin 35.8 3.5E+02 0.0076 27.5 10.9 78 108-189 139-218 (351)
272 cd00861 ProRS_anticodon_short 35.7 76 0.0016 25.3 4.8 46 129-176 19-64 (94)
273 cd06316 PBP1_ABC_sugar_binding 35.6 1.9E+02 0.004 28.3 8.5 66 131-203 19-87 (294)
274 cd06348 PBP1_ABC_ligand_bindin 35.5 1.9E+02 0.0041 29.0 8.7 79 108-189 135-215 (344)
275 TIGR00272 DPH2 diphthamide bio 35.4 1.7E+02 0.0036 32.0 8.5 66 103-174 275-340 (496)
276 cd05799 PGM2 This CD includes 35.3 1.6E+02 0.0034 31.9 8.5 48 90-143 163-212 (487)
277 PLN02251 pyrophosphate-depende 35.1 1.1E+02 0.0023 34.0 7.1 105 109-220 128-237 (568)
278 cd06306 PBP1_TorT-like TorT-li 35.0 1.9E+02 0.0042 27.8 8.4 66 131-203 19-87 (268)
279 cd02037 MRP-like MRP (Multiple 35.0 76 0.0017 28.6 5.2 39 113-153 2-40 (169)
280 cd01742 GATase1_GMP_Synthase T 34.9 48 0.001 30.3 3.9 44 131-180 12-55 (181)
281 cd00032 CASc Caspase, interleu 34.9 1.4E+02 0.003 29.0 7.4 72 107-178 6-86 (243)
282 cd06303 PBP1_LuxPQ_Quorum_Sens 34.9 2E+02 0.0042 27.9 8.5 59 131-189 20-83 (280)
283 PRK09426 methylmalonyl-CoA mut 34.8 2E+02 0.0044 32.9 9.4 58 130-189 599-656 (714)
284 PRK13566 anthranilate synthase 34.7 1.5E+02 0.0033 33.9 8.5 59 108-180 525-583 (720)
285 cd06347 PBP1_ABC_ligand_bindin 34.7 3.4E+02 0.0073 26.8 10.4 77 109-188 135-213 (334)
286 cd06326 PBP1_STKc_like Type I 34.5 4.7E+02 0.01 25.8 12.0 77 109-189 136-214 (336)
287 cd06279 PBP1_LacI_like_3 Ligan 34.4 2.3E+02 0.0051 27.4 9.0 65 130-205 23-87 (283)
288 PRK14314 glmM phosphoglucosami 34.2 1.4E+02 0.0031 31.8 7.9 50 92-147 158-207 (450)
289 cd03026 AhpF_NTD_C TRX-GRX-lik 34.2 2.1E+02 0.0046 23.1 7.2 68 99-172 3-71 (89)
290 cd00466 DHQase_II Dehydroquina 34.2 1.3E+02 0.0029 26.9 6.3 43 130-173 30-72 (140)
291 cd06283 PBP1_RegR_EndR_KdgR_li 34.0 2.7E+02 0.0058 26.3 9.2 69 129-205 17-86 (267)
292 COG1432 Uncharacterized conser 34.0 66 0.0014 30.0 4.6 44 155-205 99-142 (181)
293 smart00852 MoCF_biosynth Proba 33.8 89 0.0019 27.2 5.2 57 131-188 21-84 (135)
294 PRK14318 glmM phosphoglucosami 33.7 1.5E+02 0.0033 31.7 7.9 79 91-177 157-245 (448)
295 cd01540 PBP1_arabinose_binding 33.7 2.1E+02 0.0046 27.6 8.5 66 131-203 19-85 (289)
296 TIGR02634 xylF D-xylose ABC tr 33.6 2E+02 0.0044 28.4 8.5 66 131-203 18-85 (302)
297 PRK00005 fmt methionyl-tRNA fo 33.5 1.4E+02 0.0031 30.1 7.4 71 109-182 24-94 (309)
298 TIGR01088 aroQ 3-dehydroquinat 33.5 1.4E+02 0.0029 26.9 6.2 42 130-172 30-71 (141)
299 TIGR02955 TMAO_TorT TMAO reduc 33.4 2.2E+02 0.0048 27.9 8.7 55 131-185 19-77 (295)
300 cd06343 PBP1_ABC_ligand_bindin 33.4 2.6E+02 0.0057 28.2 9.5 77 109-189 144-222 (362)
301 COG1433 Uncharacterized conser 33.4 2.4E+02 0.0052 24.7 7.7 73 108-190 35-108 (121)
302 TIGR00853 pts-lac PTS system, 33.4 1.2E+02 0.0026 25.0 5.7 82 108-205 2-83 (95)
303 cd05803 PGM_like4 This PGM-lik 32.9 1.5E+02 0.0031 31.7 7.7 80 92-177 151-244 (445)
304 PRK09065 glutamine amidotransf 32.9 1.3E+02 0.0028 29.3 6.6 47 128-180 22-68 (237)
305 PRK15404 leucine ABC transport 32.9 3.3E+02 0.0072 27.9 10.2 78 108-189 160-239 (369)
306 PRK09267 flavodoxin FldA; Vali 32.9 1.1E+02 0.0023 27.8 5.8 84 110-205 2-88 (169)
307 cd03028 GRX_PICOT_like Glutare 32.7 2.6E+02 0.0057 22.4 7.7 51 110-162 8-58 (90)
308 COG1609 PurR Transcriptional r 32.6 3.1E+02 0.0068 27.9 9.8 66 107-174 56-122 (333)
309 PRK14176 bifunctional 5,10-met 32.5 2.9E+02 0.0062 28.0 9.1 98 90-191 15-124 (287)
310 PRK08857 para-aminobenzoate sy 32.1 1.7E+02 0.0038 27.2 7.2 48 129-181 11-58 (193)
311 PTZ00468 phosphofructokinase f 31.9 88 0.0019 37.9 6.1 103 109-218 134-241 (1328)
312 PRK14179 bifunctional 5,10-met 31.8 3.9E+02 0.0084 26.9 9.9 98 90-191 9-118 (284)
313 PRK10887 glmM phosphoglucosami 31.6 1.6E+02 0.0035 31.4 7.7 50 92-147 152-201 (443)
314 cd02042 ParA ParA and ParB of 31.6 1.7E+02 0.0036 23.8 6.3 56 113-184 2-57 (104)
315 PRK09701 D-allose transporter 31.5 2.1E+02 0.0045 28.5 8.2 66 131-203 44-113 (311)
316 cd03027 GRX_DEP Glutaredoxin ( 31.5 2.3E+02 0.005 21.5 7.8 59 111-176 2-60 (73)
317 cd01251 PH_centaurin_alpha Cen 31.4 59 0.0013 27.2 3.5 26 79-104 76-101 (103)
318 PRK15118 universal stress glob 31.3 1.6E+02 0.0035 25.3 6.6 67 132-205 69-139 (144)
319 PRK14180 bifunctional 5,10-met 31.1 3.3E+02 0.0072 27.4 9.3 81 108-192 31-118 (282)
320 COG2984 ABC-type uncharacteriz 31.0 3.2E+02 0.007 28.0 9.2 91 92-190 145-235 (322)
321 PF12138 Spherulin4: Spherulat 31.0 84 0.0018 31.0 5.0 43 110-152 31-79 (253)
322 cd06221 sulfite_reductase_like 30.8 1.8E+02 0.004 28.2 7.5 79 109-190 127-213 (253)
323 COG1646 Predicted phosphate-bi 30.8 1.1E+02 0.0025 29.8 5.6 73 131-205 5-78 (240)
324 COG2185 Sbm Methylmalonyl-CoA 30.7 2.4E+02 0.0053 25.4 7.4 57 130-188 29-85 (143)
325 cd01540 PBP1_arabinose_binding 30.5 4.9E+02 0.011 24.9 10.7 103 86-189 105-216 (289)
326 cd06298 PBP1_CcpA_like Ligand- 30.5 3E+02 0.0065 26.0 8.9 56 131-187 19-75 (268)
327 cd06302 PBP1_LsrB_Quorum_Sensi 30.4 2.6E+02 0.0056 27.5 8.6 66 131-203 19-87 (298)
328 PF00462 Glutaredoxin: Glutare 30.3 1.6E+02 0.0036 21.3 5.5 33 130-162 12-44 (60)
329 cd05800 PGM_like2 This PGM-lik 30.2 2.5E+02 0.0053 30.1 8.9 80 92-177 153-245 (461)
330 PRK07649 para-aminobenzoate/an 30.2 1.5E+02 0.0033 27.8 6.5 49 129-182 11-59 (195)
331 cd01574 PBP1_LacI Ligand-bindi 30.1 3.4E+02 0.0074 25.6 9.2 50 130-179 18-69 (264)
332 PRK14320 glmM phosphoglucosami 30.0 2.3E+02 0.0049 30.3 8.5 49 92-147 154-202 (443)
333 PRK14190 bifunctional 5,10-met 30.0 3E+02 0.0065 27.7 8.8 98 90-190 10-117 (284)
334 TIGR03682 arCOG04112 arCOG0411 29.9 2.6E+02 0.0056 28.5 8.5 65 103-174 206-270 (308)
335 PRK10792 bifunctional 5,10-met 29.9 4.2E+02 0.0091 26.7 9.8 98 90-191 10-119 (285)
336 cd01575 PBP1_GntR Ligand-bindi 29.8 3E+02 0.0065 25.9 8.8 65 131-203 19-84 (268)
337 cd06329 PBP1_SBP_like_3 Peripl 29.6 2.7E+02 0.0058 28.0 8.7 103 81-189 117-224 (342)
338 PRK14184 bifunctional 5,10-met 29.5 4.4E+02 0.0096 26.6 9.9 97 91-191 9-117 (286)
339 cd01235 PH_SETbf Set binding f 29.3 58 0.0012 26.6 3.1 24 80-103 78-101 (101)
340 cd06354 PBP1_BmpA_PnrA_like Pe 29.2 1.7E+02 0.0036 28.4 6.9 45 131-175 22-66 (265)
341 cd01653 GATase1 Type 1 glutami 29.1 71 0.0015 24.9 3.6 47 132-182 16-62 (115)
342 TIGR02026 BchE magnesium-proto 29.1 1.4E+02 0.003 32.5 6.8 59 114-172 3-69 (497)
343 cd03088 ManB ManB is a bacteri 28.9 2.7E+02 0.0059 29.8 8.9 80 91-177 146-236 (459)
344 PRK14178 bifunctional 5,10-met 28.9 3.6E+02 0.0077 27.1 9.1 98 91-191 8-112 (279)
345 PRK15414 phosphomannomutase Cp 28.8 2.9E+02 0.0063 29.6 9.1 82 92-177 152-248 (456)
346 cd03128 GAT_1 Type 1 glutamine 28.6 1.1E+02 0.0024 22.5 4.5 47 132-182 16-62 (92)
347 PTZ00468 phosphofructokinase f 28.5 1.3E+02 0.0029 36.5 6.8 54 159-218 793-850 (1328)
348 PRK14316 glmM phosphoglucosami 28.5 2.2E+02 0.0048 30.4 8.1 78 92-177 156-243 (448)
349 TIGR01481 ccpA catabolite cont 28.4 5E+02 0.011 25.6 10.4 67 108-176 58-125 (329)
350 PRK10116 universal stress prot 28.3 2.3E+02 0.0051 24.2 7.0 66 133-205 69-139 (142)
351 cd06325 PBP1_ABC_uncharacteriz 28.2 4.8E+02 0.011 24.8 10.0 78 107-189 129-206 (281)
352 PRK14194 bifunctional 5,10-met 28.2 4.5E+02 0.0099 26.7 9.8 99 89-191 10-119 (301)
353 PRK10423 transcriptional repre 28.1 2.6E+02 0.0056 27.6 8.2 70 107-178 54-124 (327)
354 cd06321 PBP1_ABC_sugar_binding 28.1 2.2E+02 0.0047 27.2 7.4 68 131-205 19-90 (271)
355 PRK05562 precorrin-2 dehydroge 27.7 2.2E+02 0.0048 27.6 7.2 58 131-189 39-108 (223)
356 PLN02616 tetrahydrofolate dehy 27.6 4.7E+02 0.01 27.4 9.9 100 89-192 79-190 (364)
357 cd06350 PBP1_GPCR_family_C_lik 27.5 5.9E+02 0.013 25.3 10.8 78 108-189 159-240 (348)
358 cd06384 PBP1_NPR_B Ligand-bind 27.4 6.1E+02 0.013 26.2 11.2 58 131-189 166-225 (399)
359 PRK11574 oxidative-stress-resi 27.4 1.2E+02 0.0026 28.2 5.2 65 109-178 2-78 (196)
360 TIGR02667 moaB_proteo molybden 27.3 3.5E+02 0.0075 24.6 8.1 59 131-189 25-91 (163)
361 cd01740 GATase1_FGAR_AT Type 1 27.3 1.3E+02 0.0027 29.3 5.5 53 113-177 2-54 (238)
362 PRK14168 bifunctional 5,10-met 27.2 4.1E+02 0.0089 27.0 9.2 98 90-191 10-119 (297)
363 cd01230 PH_EFA6 EFA6 Pleckstri 27.2 86 0.0019 27.2 3.8 27 80-106 88-114 (117)
364 cd06311 PBP1_ABC_sugar_binding 27.1 3E+02 0.0065 26.3 8.3 68 131-205 19-93 (274)
365 cd05801 PGM_like3 This bacteri 26.9 2.5E+02 0.0054 30.8 8.3 51 91-147 189-240 (522)
366 TIGR01815 TrpE-clade3 anthrani 26.9 3.1E+02 0.0066 31.5 9.2 46 130-181 529-574 (717)
367 cd03145 GAT1_cyanophycinase Ty 26.6 2E+02 0.0043 27.5 6.7 46 130-177 46-94 (217)
368 PTZ00150 phosphoglucomutase-2- 26.6 2.5E+02 0.0054 31.2 8.4 46 92-143 208-254 (584)
369 cd01237 Unc112 Unc-112 pleckst 26.5 1.4E+02 0.003 25.5 4.9 22 80-101 80-101 (106)
370 cd06271 PBP1_AglR_RafR_like Li 26.4 2.5E+02 0.0055 26.5 7.6 65 131-203 23-88 (268)
371 cd06346 PBP1_ABC_ligand_bindin 26.2 5.4E+02 0.012 25.4 10.1 77 109-189 137-215 (312)
372 PRK11175 universal stress prot 26.1 2.6E+02 0.0056 27.6 7.7 65 135-205 76-146 (305)
373 cd06274 PBP1_FruR Ligand bindi 25.9 4E+02 0.0087 25.2 8.9 65 131-203 19-84 (264)
374 cd06338 PBP1_ABC_ligand_bindin 25.8 5.1E+02 0.011 25.7 10.0 77 109-189 141-219 (345)
375 PRK09273 hypothetical protein; 25.7 1.5E+02 0.0032 28.5 5.4 55 114-169 4-66 (211)
376 PLN02897 tetrahydrofolate dehy 25.7 3.9E+02 0.0085 27.7 8.9 101 89-192 62-173 (345)
377 PRK14181 bifunctional 5,10-met 25.6 4.1E+02 0.0088 26.9 8.8 97 91-191 8-112 (287)
378 cd06297 PBP1_LacI_like_12 Liga 25.4 3.9E+02 0.0085 25.5 8.8 65 131-203 19-84 (269)
379 PRK14172 bifunctional 5,10-met 25.3 3.9E+02 0.0085 26.8 8.6 98 90-191 9-118 (278)
380 PF13377 Peripla_BP_3: Peripla 25.2 1.5E+02 0.0033 25.8 5.3 79 109-190 9-91 (160)
381 PRK07053 glutamine amidotransf 25.2 97 0.0021 30.1 4.3 59 109-179 2-60 (234)
382 COG0859 RfaF ADP-heptose:LPS h 25.2 1.8E+02 0.004 29.6 6.5 71 111-186 175-249 (334)
383 PRK14182 bifunctional 5,10-met 25.2 4.8E+02 0.01 26.3 9.2 100 90-193 8-118 (282)
384 PRK03619 phosphoribosylformylg 25.1 1.7E+02 0.0037 28.0 5.9 50 111-177 2-52 (219)
385 PRK14169 bifunctional 5,10-met 24.9 3.9E+02 0.0084 26.9 8.5 99 90-191 8-116 (282)
386 cd06294 PBP1_ycjW_transcriptio 24.9 4.6E+02 0.01 24.7 9.1 66 130-203 23-89 (270)
387 PRK12412 pyridoxal kinase; Rev 24.8 1.2E+02 0.0025 30.0 4.8 25 210-234 209-233 (268)
388 cd06284 PBP1_LacI_like_6 Ligan 24.8 2.5E+02 0.0054 26.5 7.1 50 129-178 17-67 (267)
389 PRK14987 gluconate operon tran 24.7 5.1E+02 0.011 25.6 9.7 86 108-203 62-148 (331)
390 cd01391 Periplasmic_Binding_Pr 24.7 5.4E+02 0.012 23.4 10.5 97 84-189 104-204 (269)
391 cd05565 PTS_IIB_lactose PTS_II 24.7 2.2E+02 0.0047 23.9 5.7 79 111-205 2-80 (99)
392 PRK08007 para-aminobenzoate sy 24.6 2.4E+02 0.0053 26.1 6.8 49 129-182 11-59 (187)
393 cd03522 MoeA_like MoeA_like. T 24.4 3.6E+02 0.0078 27.6 8.3 68 108-177 158-230 (312)
394 PF02879 PGM_PMM_II: Phosphogl 24.4 1.3E+02 0.0028 24.8 4.4 78 94-177 2-94 (104)
395 PRK14193 bifunctional 5,10-met 24.4 4.5E+02 0.0098 26.5 8.9 98 90-191 10-118 (284)
396 cd06277 PBP1_LacI_like_1 Ligan 24.4 4.3E+02 0.0094 25.0 8.8 64 131-203 22-86 (268)
397 cd06272 PBP1_hexuronate_repres 24.4 4.7E+02 0.01 24.7 9.0 44 131-177 19-62 (261)
398 cd06382 PBP1_iGluR_Kainate N-t 24.4 4.9E+02 0.011 25.7 9.5 73 108-188 128-203 (327)
399 PRK14175 bifunctional 5,10-met 24.2 4.4E+02 0.0096 26.6 8.8 112 90-205 10-132 (286)
400 cd06344 PBP1_ABC_ligand_bindin 24.1 4.5E+02 0.0097 26.2 9.2 103 80-187 107-212 (332)
401 cd06353 PBP1_BmpA_Med_like Per 24.1 2.5E+02 0.0053 27.5 7.0 55 132-188 22-77 (258)
402 TIGR00177 molyb_syn molybdenum 24.1 2.5E+02 0.0054 24.8 6.5 56 131-187 30-92 (144)
403 cd06358 PBP1_NHase Type I peri 24.0 6.3E+02 0.014 25.1 10.3 78 108-189 131-210 (333)
404 cd03148 GATase1_EcHsp31_like T 24.0 1.1E+02 0.0023 29.8 4.3 16 165-180 95-110 (232)
405 PRK09982 universal stress prot 23.9 3.4E+02 0.0073 23.5 7.3 46 154-205 91-139 (142)
406 TIGR00566 trpG_papA glutamine 23.9 2.5E+02 0.0054 26.1 6.7 49 129-182 11-59 (188)
407 TIGR01132 pgm phosphoglucomuta 23.9 3E+02 0.0065 30.3 8.3 50 92-147 207-257 (543)
408 PRK09492 treR trehalose repres 23.9 2.4E+02 0.0052 27.8 7.0 79 109-189 175-254 (315)
409 PRK03604 moaC bifunctional mol 23.7 2.8E+02 0.006 28.4 7.4 76 113-188 160-242 (312)
410 cd06292 PBP1_LacI_like_10 Liga 23.7 5.2E+02 0.011 24.5 9.2 68 129-203 17-89 (273)
411 PRK14174 bifunctional 5,10-met 23.6 4.7E+02 0.01 26.5 8.9 80 90-173 8-96 (295)
412 PRK13527 glutamine amidotransf 23.6 2.2E+02 0.0048 26.6 6.4 43 129-180 15-57 (200)
413 PF00169 PH: PH domain; Inter 23.6 89 0.0019 24.6 3.2 24 80-103 80-103 (104)
414 PRK14171 bifunctional 5,10-met 23.5 6.8E+02 0.015 25.3 10.0 94 108-205 32-132 (288)
415 cd06336 PBP1_ABC_ligand_bindin 23.3 5.7E+02 0.012 25.7 9.8 78 108-189 137-217 (347)
416 PLN02516 methylenetetrahydrofo 23.1 5.7E+02 0.012 26.0 9.4 101 89-193 15-127 (299)
417 COG0655 WrbA Multimeric flavod 23.1 2.6E+02 0.0057 26.3 6.8 40 110-151 2-41 (207)
418 PRK13146 hisH imidazole glycer 23.0 3.4E+02 0.0073 25.7 7.5 55 110-182 2-56 (209)
419 cd06308 PBP1_sensor_kinase_lik 22.9 3.5E+02 0.0076 25.7 7.9 67 131-204 19-88 (270)
420 cd06385 PBP1_NPR_A Ligand-bind 22.9 5.9E+02 0.013 26.3 10.0 58 131-189 166-225 (405)
421 TIGR01470 cysG_Nterm siroheme 22.8 3.1E+02 0.0068 25.9 7.2 70 110-188 10-91 (205)
422 TIGR01752 flav_long flavodoxin 22.8 1.9E+02 0.0042 26.2 5.6 82 112-205 2-86 (167)
423 PF01075 Glyco_transf_9: Glyco 22.7 2.3E+02 0.0049 27.0 6.4 76 110-188 104-183 (247)
424 cd06330 PBP1_Arsenic_SBP_like 22.7 3.3E+02 0.0071 27.2 7.9 78 108-189 137-218 (346)
425 PRK07564 phosphoglucomutase; V 22.7 3E+02 0.0064 30.3 7.9 50 92-147 206-256 (543)
426 cd06293 PBP1_LacI_like_11 Liga 22.6 5.7E+02 0.012 24.2 9.3 46 131-176 19-65 (269)
427 TIGR01007 eps_fam capsular exo 22.4 1.6E+02 0.0035 27.4 5.1 55 98-154 5-59 (204)
428 PLN02371 phosphoglucosamine mu 22.3 4.2E+02 0.009 29.5 9.1 48 92-145 236-291 (583)
429 PRK14186 bifunctional 5,10-met 22.3 5.2E+02 0.011 26.3 8.9 98 90-191 9-118 (297)
430 PRK13849 putative crown gall t 22.3 1.5E+02 0.0033 28.6 5.0 48 111-160 2-49 (231)
431 PRK14321 glmM phosphoglucosami 22.3 3.1E+02 0.0067 29.3 7.9 47 92-147 149-195 (449)
432 PHA02519 plasmid partition pro 22.2 1.8E+02 0.0038 30.7 5.8 66 90-157 85-152 (387)
433 PRK10310 PTS system galactitol 21.9 1.6E+02 0.0036 24.1 4.5 52 111-172 4-56 (94)
434 TIGR01753 flav_short flavodoxi 21.9 2.3E+02 0.005 24.2 5.7 66 113-188 2-75 (140)
435 PRK14187 bifunctional 5,10-met 21.8 7.7E+02 0.017 25.0 10.0 96 92-191 11-118 (294)
436 PRK13525 glutamine amidotransf 21.8 4.1E+02 0.009 24.7 7.7 51 110-180 2-52 (189)
437 COG0337 AroB 3-dehydroquinate 21.7 1.6E+02 0.0035 30.7 5.2 86 108-206 32-129 (360)
438 cd06363 PBP1_Taste_receptor Li 21.6 5.6E+02 0.012 26.6 9.6 77 108-189 175-257 (410)
439 PRK03371 pdxA 4-hydroxythreoni 21.6 2.5E+02 0.0055 28.9 6.6 63 107-175 200-267 (326)
440 TIGR03453 partition_RepA plasm 21.4 2.3E+02 0.005 29.5 6.5 49 108-158 102-150 (387)
441 PF03129 HGTP_anticodon: Antic 21.3 1.8E+02 0.0039 23.2 4.6 46 129-176 17-62 (94)
442 COG1393 ArsC Arsenate reductas 21.3 2.7E+02 0.0059 24.0 5.9 30 111-147 2-31 (117)
443 cd06327 PBP1_SBP_like_1 Peripl 21.3 5.5E+02 0.012 25.5 9.2 77 109-189 135-213 (334)
444 PRK00232 pdxA 4-hydroxythreoni 21.3 2.5E+02 0.0054 29.0 6.5 64 105-174 199-267 (332)
445 PRK14323 glmM phosphoglucosami 21.1 3.8E+02 0.0083 28.4 8.3 78 91-177 156-243 (440)
446 TIGR01684 viral_ppase viral ph 21.1 2.1E+02 0.0046 29.0 5.8 46 132-177 153-198 (301)
447 PRK10936 TMAO reductase system 21.0 7.4E+02 0.016 25.0 10.1 86 108-203 45-134 (343)
448 cd01541 PBP1_AraR Ligand-bindi 20.9 4.7E+02 0.01 24.8 8.3 66 131-203 19-89 (273)
449 cd06290 PBP1_LacI_like_9 Ligan 20.9 3.5E+02 0.0076 25.6 7.3 47 131-177 19-66 (265)
450 PRK12616 pyridoxal kinase; Rev 20.8 1.7E+02 0.0038 28.7 5.2 25 210-234 212-236 (270)
451 PRK14191 bifunctional 5,10-met 20.8 6E+02 0.013 25.6 8.9 99 90-191 8-117 (285)
452 cd01220 PH_CDEP Chondrocyte-de 20.8 1.3E+02 0.0028 25.1 3.6 26 79-104 73-98 (99)
453 TIGR01481 ccpA catabolite cont 20.8 4E+02 0.0088 26.3 8.0 79 109-189 176-258 (329)
454 smart00233 PH Pleckstrin homol 20.8 1.1E+02 0.0024 23.5 3.2 24 80-103 78-101 (102)
455 COG1619 LdcA Uncharacterized p 20.7 2.2E+02 0.0047 29.2 5.9 67 110-178 10-87 (313)
456 TIGR00557 pdxA 4-hydroxythreon 20.7 2.3E+02 0.0051 29.0 6.1 62 107-174 194-260 (320)
457 COG1211 IspD 4-diphosphocytidy 20.7 4.7E+02 0.01 25.5 7.9 74 107-190 21-96 (230)
458 cd03012 TlpA_like_DipZ_like Tl 20.6 5.2E+02 0.011 21.7 8.2 90 83-179 29-118 (126)
459 cd01252 PH_cytohesin Cytohesin 20.5 1.3E+02 0.0028 25.9 3.7 27 79-105 89-115 (125)
460 cd01265 PH_PARIS-1 PARIS-1 ple 20.5 1.1E+02 0.0025 25.0 3.2 23 80-102 71-93 (95)
461 PRK08250 glutamine amidotransf 20.4 1.5E+02 0.0032 28.9 4.5 44 132-180 16-59 (235)
462 PRK03743 pdxA 4-hydroxythreoni 20.3 2.8E+02 0.0061 28.6 6.6 62 107-174 201-267 (332)
463 PF01866 Diphthamide_syn: Puta 20.2 3.5E+02 0.0075 27.4 7.3 66 103-174 203-268 (307)
No 1
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=100.00 E-value=6.8e-94 Score=761.84 Aligned_cols=479 Identities=73% Similarity=1.241 Sum_probs=432.7
Q ss_pred CCccccceeeeeEEEeceeEEEEEcCCCeEEEecCCceeeeeeeeeeEEEEcCceEEEEEeecCCCcccccCCCCceeEe
Q 011290 1 MDQIVQDTLSDRVRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRK 80 (489)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~vl~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 80 (489)
|+..++.+++++|+|||..+++||+++|+|+|+++.++++++++||||+.++|++++|+++++...+.+|++++++|+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (481)
T PLN02958 3 DELPSPAIISDRVLVNGVLTPLTLTAEGKLRWTDSGQRCLTVEKEVLGFVIEGSKIRVKTIVEKGGGICCRGSAGALARK 82 (481)
T ss_pred CcCCCCceeeeeEEECCEEeeEEeccCCEEEeecCCcceEEEeeeeeEEEEeCCEEEEEEEEecCCcccccCCCCCceee
Confidence 45667889999999999999999999999999998899999999999999999999999999998899999999999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHH
Q 011290 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~ 160 (489)
+++|++.+.+.++.|+++|++++++.+||||++||+||.||++++.++|.++++|+|+.++++++++.|++++||.++++
T Consensus 83 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~ 162 (481)
T PLN02958 83 DFVFEPLSDESRRLWCQKLRDYLDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVR 162 (481)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997789999999999999999999999999999
Q ss_pred HhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcC
Q 011290 161 VLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRG 240 (489)
Q Consensus 161 ~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G 240 (489)
++++.+||.|||+|||||+|||+|||+.+++|+.+.++|||+||+ ||||+||++|++..|+|.++..|+.+|++|
T Consensus 163 ~~~~~~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPa-----GTgNdfArsL~~~~gip~~~~~A~~~I~~g 237 (481)
T PLN02958 163 TMDLSKYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPA-----GTGNGMAKSLLDSVGEPCSATNAVLAIIRG 237 (481)
T ss_pred HhhhcCCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecC-----cCcchhhhhhccccCCCcCHHHHHHHHHcC
Confidence 998889999999999999999999999998888788999999999 999999999977778999999999999999
Q ss_pred CeeeeeEEEEEeCCeeEEEEEeeeeeeeeccccccccccccCchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCc
Q 011290 241 HKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPST 320 (489)
Q Consensus 241 ~~~~lDl~~v~~~~~~~fs~~~~~~G~~adv~~~se~~R~mG~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~ 320 (489)
+.+++|++++++++.++|++++++|||+||++..+|++||||++||.+++++++++++.|+++|+|+|+++.+.++.|..
T Consensus 238 ~~~~vDlg~v~~~~~~~f~vn~~g~GfdAdV~~~se~kr~lG~lrY~~~~l~~l~~~r~y~~~I~~~~a~~~~~~~~~~~ 317 (481)
T PLN02958 238 HKCSLDVATILQGETKFFSVLMLAWGLVADIDIESEKYRWMGSARLDFYGLQRILCLRQYNGRISFVPAPGFEAYGEPTS 317 (481)
T ss_pred CceEEeEEEEEcCCceEEEEEeeeeehhhhhhcccccccccchHHHHHHHHHHHHhcCCcceEEEEEecccccccccccc
Confidence 99999999998655677777789999999999999999999999999999999999999999999999988877777765
Q ss_pred ccccCcCCCCCCCCCcccccccccCCCcccCCCCceEEEeecEEEEEEeeccCCCCCCCcCCCCccCCCeEEEEEEecCC
Q 011290 321 YSEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCP 400 (489)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~aP~A~~~DG~ldlilv~~~s 400 (489)
+..... .++.+...+...++++..+....+|+.+++.|++++++|++|+|+++.++|+|+++||.|||++++++|
T Consensus 318 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~fl~v~v~N~~~~Ggg~~iaP~A~l~DG~LDlviv~~~s 392 (481)
T PLN02958 318 YNGEST-----SKEESGKDKQHGYQGPDVKLENLDWRTIKGPFVSVWLHNVPWGGEDTLAAPDAKFSDGYLDLILIKDCP 392 (481)
T ss_pred cccccc-----ccccccccccccccCCccccCCccceEeecceeEEeeccCcccCCCcccCCcccCCCCeEEEEEEcCCC
Confidence 432110 000111111223455544455568999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhccCCcccCCcEEEEEEeEEEEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCccccccEEEEEec
Q 011290 401 KLALFSLLSNLNKGGHVESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDKLQITVDQ 480 (489)
Q Consensus 401 ~~~ll~~l~~~~~G~~~~~~~V~~~kvk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~~~~p~q~~v~~ 480 (489)
+++++++|.++..|+|++.|+|+|+++++|+|++....+++.++.++++|||.++..|++|+|.|++|++|+|+|++|||
T Consensus 393 ~~~lL~~l~~~~~G~h~~~~~V~~~k~k~~~I~~~~~~~~~~~~~~i~iDGE~~~~~p~~i~v~~~al~~~~~~~~~~~~ 472 (481)
T PLN02958 393 KLALLALMTKLSDGTHVKSPYVMYLKVKAFVLEPGPRTDDPTKGGIIDSDGEVLARGNGSYKCDQKALMSYDKLQISVDQ 472 (481)
T ss_pred HHHHHHHHHHHhCCCccCCCceEEEEEEEEEEEECCcccCcCcCCeEEECCcccCCCCceeeeccccccccCceEEEEcC
Confidence 99999999999999999999999999999999985322122346789999999999999999999999999999999999
Q ss_pred CccccccCC
Q 011290 481 GLATLFSPV 489 (489)
Q Consensus 481 ~l~~~~~~~ 489 (489)
||+|+|||+
T Consensus 473 ~~~~~~~~~ 481 (481)
T PLN02958 473 GLATLFSPV 481 (481)
T ss_pred CceEeecCC
Confidence 999999995
No 2
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-69 Score=556.28 Aligned_cols=358 Identities=42% Similarity=0.712 Sum_probs=305.1
Q ss_pred hhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011290 104 DSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (489)
Q Consensus 104 ~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVv 183 (489)
.+.+|+++++|||||+||+|+|.++|+++|+|+|.+|+++++++.|++++||+|+++++++++||+||||||||++|||+
T Consensus 174 ~~~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDGl~hEVl 253 (579)
T KOG1116|consen 174 DSLKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDGLLHEVL 253 (579)
T ss_pred cccCCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHHHhhhccccceEEEecCCcCHHHhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCeeeeeEEEEEeCC-eeEEEEEe
Q 011290 184 NGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGK-TRFHSVLM 262 (489)
Q Consensus 184 nGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~lDl~~v~~~~-~~~fs~~~ 262 (489)
|||+.|+||+++.++|||+||| ||||+||++++|+.|. .-+..|++.|++|..+++|+.++.... .++|||++
T Consensus 254 NGLl~R~D~~~~~klPigiiP~-----GSGNala~Sv~~~~~~-~~~~~a~l~iirg~~t~~dv~~v~~~~~~~~fSfLs 327 (579)
T KOG1116|consen 254 NGLLERPDWEAAVKLPIGIIPC-----GSGNALAKSVLWTNGP-DLPLLATLLIIRGRLTPMDVSVVEYAGKDRHFSFLS 327 (579)
T ss_pred hccccccchhhHhcCceeEeec-----CCccHHHHHhhcccCc-ccchHHHHHHHccCCCchheeehhhccCcceEEEEe
Confidence 9999999999999999999999 9999999999887664 137789999999999999999998643 45999999
Q ss_pred eeeeeeeccccccccccccCchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCccc-----ccCcC----------
Q 011290 263 LAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYS-----EQNIC---------- 327 (489)
Q Consensus 263 ~~~G~~adv~~~se~~R~mG~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~~~-----~~~~~---------- 327 (489)
++|||+||+|++||++||||++||+++++++++++|+|+++|+|+|++...+++.|..+. .+|..
T Consensus 328 ~~wGlIADiDI~SEk~R~mG~~Rf~lg~~~rl~~lr~Y~gri~ylp~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~s~~ 407 (579)
T KOG1116|consen 328 AAWGLIADVDIESEKYRWMGPARFTLGAFLRLIQLRKYKGRIEYLPAKGKSAEPLPAHELEAADSEGCLSTHADTEPSEY 407 (579)
T ss_pred eeeeeEEecccchHHHHhhcchhhhHHHHHHHHhccCCCceEEEecccccccCcccchhhcccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999987665444332111 01110
Q ss_pred -------------CCCCCCCCccc-ccccccCCC-cccCCCCceEEEee-cEEEEEEeeccCCCCCCCcCCCCccCCCeE
Q 011290 328 -------------NPIPSQQQPIK-ILQHGYQGP-DVDLKNLEWRIING-PFVAVWLHNVPWGSENTMAAPDAKFSDGYL 391 (489)
Q Consensus 328 -------------~~~~~~~~~~~-~~~~~~~g~-~~~~~~~~w~~i~g-~f~~v~v~N~~~~g~~~~~aP~A~~~DG~l 391 (489)
+.+...+.+.. .+.-..+-| -....+.+|..+.+ +|+.+.+.-.+|+++++.++|.|.++||.|
T Consensus 408 ~~~~~~~~~~~~~~~s~~~e~s~~~~~~~~~~~p~~~~p~psdw~~~~~~d~~~~~a~~~sy~~~d~~~~P~A~~~dg~I 487 (579)
T KOG1116|consen 408 PRLSVPKMSPKSVLRSPVSETSPVIPEDPLHLSPPLEEPLPSDWEVVPGVDFVCILAILLSYLGADMKFAPAARPDDGLI 487 (579)
T ss_pred ccccccccCccccccCcccccCcccCCccccCCCcccCCCCcceeeecCcceeeeehhhhhhccCCcccccccccCCCeE
Confidence 00000000000 000000111 11223467999998 899988888889999999999999999999
Q ss_pred EEEEEec-CChHHHHHHHHhhccCCcc--cCCcEEEEEEeEEEEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCc
Q 011290 392 DLIIIKD-CPKLALFSLLSNLNKGGHV--ESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSL 468 (489)
Q Consensus 392 dlilv~~-~s~~~ll~~l~~~~~G~~~--~~~~V~~~kvk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L 468 (489)
||++++. .+|.+++.+|+++..|.|+ ..|+|.|+++++|+++|.. ..+++.+|||.+
T Consensus 488 ~lv~~~~~~~r~~ll~~llald~gsh~~~~~p~v~~~~vra~r~epv~------~~~~~~vDGE~~-------------- 547 (579)
T KOG1116|consen 488 HLVIVRAGGSRTQLLRLLLALDKGSHLHVECPFVKYVKVRAFRLEPVT------PSGYFAVDGELV-------------- 547 (579)
T ss_pred EEEEEccCCcHHHHHHHHHhhcccccccccCCceeEEEeEEEEEEEec------CCceEEecccEe--------------
Confidence 9999995 5999999999999999996 8899999999999999984 458999999986
Q ss_pred cccccEEEEEecCccccccC
Q 011290 469 MSYDKLQITVDQGLATLFSP 488 (489)
Q Consensus 469 ~~~~p~q~~v~~~l~~~~~~ 488 (489)
++.|+|++|+|+++.+|++
T Consensus 548 -~~ep~q~~v~p~~i~~~s~ 566 (579)
T KOG1116|consen 548 -PLEPLQVQVLPGLILTLSG 566 (579)
T ss_pred -eccceeEEecccceeEEec
Confidence 8999999999999999986
No 3
>PLN02204 diacylglycerol kinase
Probab=100.00 E-value=9.1e-66 Score=544.60 Aligned_cols=450 Identities=24% Similarity=0.377 Sum_probs=348.8
Q ss_pred ccceeeeeEEEece-eEEEEEcCCCeEEEecC------Cceee-----------eeeeeeeEEEEcCceEEEEEeecCCC
Q 011290 5 VQDTLSDRVRVSGR-ITAMTLTGDGRLRWTDG------HQRSL-----------TLEKQVLGFVVEGSKIRIRAVVDGRD 66 (489)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~w~~~------~~~~~-----------~~~~~vl~~~~~~~~~~i~~~~~~~~ 66 (489)
+.++|.+.+.+++. .+.|||++|+++ |.+- ++.|+ .-.+||+||+..+..+++.|.....+
T Consensus 17 ~~~~~~~~~~~~~~~~v~lt~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~ 95 (601)
T PLN02204 17 DRSVLSSCLFLDHVGDVSLTLNSDGLS-WKCLDSSDNDGTTCLGIKFCEKSETEIKFSDVYAVEFINYGLIHSPKLSHAK 95 (601)
T ss_pred ccccccceeeecccccEEEEEcCCceE-EecccccccCCceeeccccccCcccceeeeeeeEEeeccccceecccccccc
Confidence 34577777877774 688999888887 8861 12221 11289999998777776655543322
Q ss_pred ccc--------------------ccCCCCceeEeeEEecCCCHHHHHHHHHHHHHhhh-hcCCCcEEEEEEcCCCCCccc
Q 011290 67 EIC--------------------CGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFID-SFGRPKRLYIFVNPFGGKKIA 125 (489)
Q Consensus 67 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~-~~~rpkr~lviiNP~sG~~~a 125 (489)
.+. ....+..|+.+.|+|.+.+...++.|.++|++.+. ...|||+++|||||.||+|++
T Consensus 96 ~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~w~~~~~~f~~~d~~~~~~w~~~l~~~l~~~~~r~k~llVivNP~sGkg~~ 175 (601)
T PLN02204 96 GCFRERLSETQEMYRFTVHGFQRSRKEPCLWVLAVYTFGHKDLQTCQSWVDRLNASLNKEVGRPKNLLVFVHPLSGKGSG 175 (601)
T ss_pred hhhhccccccccceeeEEEEeeecccCCCcceeEEEeecCCCHHHHHHHHHHHHHHHhhccCCCceEEEEECCCCCCcch
Confidence 211 00112357889999999999999999999999987 458999999999999999999
Q ss_pred cccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhh---cCCCceEEEEcCCChHHHHHHHhhcCcC-----------
Q 011290 126 SKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD---LSKYDGIVCVSGDGILVEVVNGLLERED----------- 191 (489)
Q Consensus 126 ~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~---~~~~d~IV~vGGDGtl~EVvnGL~~~~~----------- 191 (489)
.+.|+ +|+|+|+.++++++++.|++++||.++++++. +.+||+|||||||||+|||+|||+.+..
T Consensus 176 ~~~~~-~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~nEVlNGL~~~r~~~~~p~~~~~~ 254 (601)
T PLN02204 176 SRTWE-TVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNEILNGYLLSRLKVPYPPSPSDS 254 (601)
T ss_pred HHHHH-HHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHHHHHHHHhhhccccccccccccc
Confidence 99996 89999999999999999999999999997653 6789999999999999999999984310
Q ss_pred --------------ccc------------------------------------------cCCCcEEEecCcCCCCccccc
Q 011290 192 --------------WND------------------------------------------AIKVPLGVVPADFLDAGTGNG 215 (489)
Q Consensus 192 --------------~~~------------------------------------------~~~~plgiIP~~~~~~GSgN~ 215 (489)
.++ ..++||||||+ ||||+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGIIPa-----GSgN~ 329 (601)
T PLN02204 255 VHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFPFPNERFRFGIIPA-----GSTDA 329 (601)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCceEEEECC-----ccHHH
Confidence 000 13589999999 99999
Q ss_pred ceeccccccCCCCcHHHHHHHHHcCCeeeeeEEEEEeCCe---------eEEEEEeeeeeeeeccccccccccccCchhh
Q 011290 216 MIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKT---------RFHSVLMLAWGLVADIDIESEKYRWMGSARI 286 (489)
Q Consensus 216 ~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~lDl~~v~~~~~---------~~fs~~~~~~G~~adv~~~se~~R~mG~~ry 286 (489)
||+++ ..+.++.+|+++|+.|+.+++|+++|+++++ ..|.++++++||+|+|..++|++||||++||
T Consensus 330 ~a~~~----~g~~dp~taa~~Ii~G~~~~lDig~V~~~~~~~~~~~~~~~ryf~s~ag~Gf~gdVi~esek~R~mG~~rY 405 (601)
T PLN02204 330 IVMCT----TGERDPVTSALHIILGRRVCLDIAQVVRWKTTSTSEIEPYVRYAASFAGYGFYGDVISESEKYRWMGPKRY 405 (601)
T ss_pred HHHHc----cCCCCHHHHHHHHHhCCCeEeeEEEEecccccccccccccceEEEEEeecchHHHHHHHhhhhcccchHHH
Confidence 99988 4477999999999999999999999975321 1344668999999999999999999999999
Q ss_pred HHHHHHHHHhccccceEEEEecCCCCC--CCC-CCCcc------cccCcCCCCCCCCCcccccccccCCCcccCCCCceE
Q 011290 287 DFYALQRILYLRQYNGRVSFVPAPGFE--NHG-EPSTY------SEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWR 357 (489)
Q Consensus 287 ~~~~l~~l~~~r~y~~~i~~~p~~~~~--~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~ 357 (489)
.+++++.++++|.|+++|+|.+.+... +.. .|..+ ...|..+|.+|+....... .+..+.......+|.
T Consensus 406 ~~~g~k~~~~~r~y~~~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~c~Vcn~~~~~~~--~~~~p~~~~~~~~W~ 483 (601)
T PLN02204 406 DYAGTKVFLKHRSYEAEVAYLETESEKSKASSEARKRTGPKKSEKIVCRTNCSVCNTKVSTNS--PSTTPNSCPEETRWL 483 (601)
T ss_pred HHHHHHHHHhCCCceEEEEECCeEeeecccccccccccccccccchhhhhheeeecccccccc--cccccccccccccce
Confidence 999999999999999999998754221 000 00000 0112223334332100000 011222223456899
Q ss_pred EEeecEEEEEEeeccCCCCCC--CcCCCCccCCCeEEEEEEecCChHHHHHHHHhhc-c-CCcccCCcEEEEEEeEEEEE
Q 011290 358 IINGPFVAVWLHNVPWGSENT--MAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLN-K-GGHVESPYVAYLKVKAFILE 433 (489)
Q Consensus 358 ~i~g~f~~v~v~N~~~~g~~~--~~aP~A~~~DG~ldlilv~~~s~~~ll~~l~~~~-~-G~~~~~~~V~~~kvk~~~i~ 433 (489)
++.|.|.++.++++++.++.. .++|+|+++||.|||+++++++++.++++|..+. + |+|++.|+|+|+++++|+|+
T Consensus 484 ~~~G~f~~vG~~iis~~~~rap~gl~pdA~l~DG~LDLilVr~~s~~~~L~~L~~l~~~gG~~l~~~~Ve~~ktk~f~~~ 563 (601)
T PLN02204 484 RSKGRFLSVGAAIISNRNERAPDGLVADAHLSDGFLHLILIKDCPHPLYLWHLTQLAKRGGEPLNFEFVEHHKTPAFTFT 563 (601)
T ss_pred eecCceEEeeeecccccccccccccCCCCcCCCCeEEEEEECCCCHHHHHHHHHHHHhhcCccCCCCcEEEEEeeEEEEE
Confidence 999999999988888877666 4899999999999999999999999999998876 3 68999999999999999999
Q ss_pred eCCCCCCCCCCceEEecCCccccCCceeEecCCCccccccEEEEEecCccccccC
Q 011290 434 PGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDKLQITVDQGLATLFSP 488 (489)
Q Consensus 434 ~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~~~~p~q~~v~~~l~~~~~~ 488 (489)
+.. .+..|++|||+++ ..|++++|+|++++||++
T Consensus 564 s~~------~~~~~niDGE~~~---------------~~~v~v~V~~~al~lfa~ 597 (601)
T PLN02204 564 SFG------DESVWNLDGEIFQ---------------AHQLSAQVFRGLVNLFAS 597 (601)
T ss_pred ECC------CCceEEeCCCcCC---------------CccEEEEEEcCeeEEEec
Confidence 752 3567999999874 347888888888888864
No 4
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-64 Score=496.03 Aligned_cols=366 Identities=28% Similarity=0.438 Sum_probs=318.7
Q ss_pred CCceeEeeEEecCCCHHHHHHHHHHHHHhhhhc-CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh
Q 011290 74 AGSVVRKDFVFEPLSEDSKRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ 152 (489)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~-~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~ 152 (489)
+.+|+...++|.+.+.+.++.|.+.|+..|... .|||+++|||||++|+|+++++|+ .|.++|-.+.+.++|+.||++
T Consensus 122 k~~W~laq~tf~~~~~q~c~~W~~~l~~~L~k~~~RPknllvFinPfgGkG~g~ki~e-~V~~~F~la~v~tkvivTErA 200 (516)
T KOG1115|consen 122 KELWNLAQFTFGHMDLQTCQSWMDQLNYSLIKEVERPKNLLVFINPFGGKGNGSKIWE-TVSKIFILAKVNTKVIVTERA 200 (516)
T ss_pred hhhcchhcceEecccHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCCCCcccchhh-hhhhhEEeeecceeEEEEccc
Confidence 457889999999999999999999999987654 899999999999999999999996 599999999999999999999
Q ss_pred hHHHHHHHHhh---cCCCceEEEEcCCChHHHHHHHhhcCcCcccc------------CCCcEEEecCcCCCCcccccce
Q 011290 153 LHAKEIVKVLD---LSKYDGIVCVSGDGILVEVVNGLLEREDWNDA------------IKVPLGVVPADFLDAGTGNGMI 217 (489)
Q Consensus 153 ~ha~el~~~~~---~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~------------~~~plgiIP~~~~~~GSgN~~a 217 (489)
+||.+.+.++. +..||+||+|||||.+||++||++.|.+..+. .++.+||||| ||+|+++
T Consensus 201 nhA~d~~~ei~~~~~~~yDGiv~VGGDG~FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpA-----GStd~iv 275 (516)
T KOG1115|consen 201 NHAFDVMAEIQNKELHTYDGIVAVGGDGFFNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPA-----GSTDAIV 275 (516)
T ss_pred cchhhhhhhCCHhhhhhcccEEEecCchhHHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecC-----CCcCeEE
Confidence 99999998886 67899999999999999999999998764332 2578999999 9999999
Q ss_pred eccccccCCCCcHHHHHHHHHcCCeeeeeEEEEEeCCe-eEEEEEeeeeeeeeccccccccccccCchhhHHHHHHHHHh
Q 011290 218 KSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKT-RFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILY 296 (489)
Q Consensus 218 ~sl~~~~g~~~~~~~A~~~Ii~G~~~~lDl~~v~~~~~-~~fs~~~~~~G~~adv~~~se~~R~mG~~ry~~~~l~~l~~ 296 (489)
.+.. | +.|+.+.+++|+.|+..-+|+++|++.++ .+|+++.+||||++|+..+||||||||+.||++++++.+++
T Consensus 276 ~~t~---g-t~D~~TSAlHI~lG~~l~vDVctVht~~kLiRysaSa~gYGFyGDvl~dSEKYRWmGp~RYDfsglKtflk 351 (516)
T KOG1115|consen 276 MCTT---G-TRDPVTSALHIILGRKLFVDVCTVHTIEKLIRYSASAAGYGFYGDVLSDSEKYRWMGPKRYDFSGLKTFLK 351 (516)
T ss_pred EEec---c-CCccccceeeeEeccceeeeeeeeeecchheeeehhhhcccccchhhhhhhhhhccCchhhhhHHHHHHHh
Confidence 9873 3 44778888999999999999999986443 57999889999999999999999999999999999999999
Q ss_pred ccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcccCCCCceEEEeecEEEEEEeeccCCCC
Q 011290 297 LRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSE 376 (489)
Q Consensus 297 ~r~y~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~ 376 (489)
++.|+|+|+|+|+.... +|++.. ..|.+.....+.|+.+.|+|..|.++++|+.+.
T Consensus 352 H~~YegeVsFlpa~sen-----------------~~qe~~-------~~g~~~~~~~k~Wq~~~g~Fl~V~c~aipciC~ 407 (516)
T KOG1115|consen 352 HRSYEGEVSFLPAESEN-----------------PCQEPC-------PSGASLHTRSKTWQRNTGRFLKVLCRAIPCICN 407 (516)
T ss_pred ccccceEEEecccccCC-----------------chhccc-------cccCCcccCcchhhhhhhheeeeeEeecccccc
Confidence 99999999999985432 111110 011112224578999999999999999999998
Q ss_pred CC--CcCCCCccCCCeEEEEEEecCChHHHHHHHHhh-ccCCcccCCcEEEEEEeEEEEEeCCCCCCCCCCceEEecCCc
Q 011290 377 NT--MAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNL-NKGGHVESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEV 453 (489)
Q Consensus 377 ~~--~~aP~A~~~DG~ldlilv~~~s~~~ll~~l~~~-~~G~~~~~~~V~~~kvk~~~i~~~~~~~~~~~~~~~~vDGE~ 453 (489)
.. .++|.++++||.+||++++.+||+.++++|... ..+++++.++|+.+.++.|...+..++.+..+...|++|||+
T Consensus 408 ~~PrGLaP~T~LndGs~dLil~R~~SRF~fi~fl~r~a~~~~qfdf~fVe~y~v~~v~~~s~~~d~~~~d~~eWN~DGei 487 (516)
T KOG1115|consen 408 SKPRGLAPSTTLNDGSEDLILCRTKSRFLFIGFLVRSARNERQFDFLFVEAYLVDGVLHLSLIKDCSRPDYLEWNLDGEI 487 (516)
T ss_pred CCCCCcCCccccCCCccceeeeecccchHHHHHHHHHhhcccccCceeeeeeeeeeEEEEeecCCCCCCCcceeccCcch
Confidence 86 599999999999999999999999999999765 458899999999999999999998877766777889999999
Q ss_pred cccCCceeEecCCCccccccEEEEEecCcccccc
Q 011290 454 LARGKGTYQCDQKSLMSYDKLQITVDQGLATLFS 487 (489)
Q Consensus 454 ~~~~~~~~~~~~~~L~~~~p~q~~v~~~l~~~~~ 487 (489)
+. .-.|+.+++||+|+++|.
T Consensus 488 le--------------~p~~lh~rlHpqLIslfg 507 (516)
T KOG1115|consen 488 LE--------------QPKPLHFRLHPQLISLFG 507 (516)
T ss_pred hc--------------CCcceEEEechhhHhHhc
Confidence 74 223899999999999985
No 5
>PRK11914 diacylglycerol kinase; Reviewed
Probab=100.00 E-value=2.6e-50 Score=407.70 Aligned_cols=291 Identities=21% Similarity=0.310 Sum_probs=252.5
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
++++++|+||.||++++.+.|. ++.+.|++++++++++.|++++|+.++++++...++|.||++|||||+|||+|+|+.
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~-~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~l~~ 86 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAE-RAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQVLAG 86 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHH-HHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhHHhcc
Confidence 6899999999999999988884 778899999999999999999999999999877789999999999999999999975
Q ss_pred CcCccccCCCcEEEecCcCCCCcccccceeccccccCCCC-cHHHHHHHHHcCCeeeeeEEEEEeCC--eeEEEEEeeee
Q 011290 189 REDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPC-KASNAILAVIRGHKRLLDVATILQGK--TRFHSVLMLAW 265 (489)
Q Consensus 189 ~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~-~~~~A~~~Ii~G~~~~lDl~~v~~~~--~~~fs~~~~~~ 265 (489)
. ++|||+||+ ||+|+||++| |+|. +++.|+..|..|+.+++|++.++..+ .++|.+ ++++
T Consensus 87 ~-------~~~lgiiP~-----GT~NdfAr~l----g~~~~~~~~a~~~i~~g~~~~iDlg~v~~~~~~~~~f~n-~~~~ 149 (306)
T PRK11914 87 T-------DIPLGIIPA-----GTGNDHAREF----GIPTGDPEAAADVIVDGWTETVDLGRIQDDDGIVKWFGT-VAAT 149 (306)
T ss_pred C-------CCcEEEEeC-----CCcchhHHHc----CCCCCCHHHHHHHHHcCCceEEEEEEEecCCCCcEEEEE-EEee
Confidence 4 689999999 9999999999 8885 79999999999999999999998532 366754 7999
Q ss_pred eeeeccccccccccc-cCchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCccccccccc
Q 011290 266 GLVADIDIESEKYRW-MGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGY 344 (489)
Q Consensus 266 G~~adv~~~se~~R~-mG~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (489)
||+|++...+++.|| +|+++|.+++++.+.+.+.|+.+|++.
T Consensus 150 G~~a~v~~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~d------------------------------------- 192 (306)
T PRK11914 150 GFDSLVTDRANRMRWPHGRMRYNLAMLAELSKLRPLPFRLVLD------------------------------------- 192 (306)
T ss_pred ehHHHHHHHHHhccccCCchhhHHHHHHHHHhcCCCcEEEEEe-------------------------------------
Confidence 999999888887777 799999999999999888888777531
Q ss_pred CCCcccCCCCceEEEeecEEEEEEeeccCCCCCCCcCCCCccCCCeEEEEEEecCChHHHHHHHHhhccCCcccCCcEEE
Q 011290 345 QGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAY 424 (489)
Q Consensus 345 ~g~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~aP~A~~~DG~ldlilv~~~s~~~ll~~l~~~~~G~~~~~~~V~~ 424 (489)
+++.+++++.++.++|.+++|+++.++|+|.++||.||++++++.+++++++++..+.+|+|.+.|.|++
T Consensus 193 ----------g~~~~~~~~~~~~v~N~~~~GG~~~~~p~a~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~ 262 (306)
T PRK11914 193 ----------GTEEIVTDLTLAAFGNTRSYGGGMLICPNADHTDGLLDITMVQSASRTRLLRLFPTVFKGTHVELDEVST 262 (306)
T ss_pred ----------CCeEEEeeEEEEEEeCcccccCCceeCCCCcCCCCcEEEEEEecCCHHHHHHHHHHhcCCcccCCCcEEE
Confidence 1123456777889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeEEEEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCccccc
Q 011290 425 LKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYD 472 (489)
Q Consensus 425 ~kvk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~~~~ 472 (489)
+++++++|+.. +..+++|||.....|+++++.|++|.++.
T Consensus 263 ~~~~~i~i~~~--------~~~~~~DGE~~~~~p~~i~v~p~al~v~v 302 (306)
T PRK11914 263 ARAKTVHVECP--------GINAYADGDFACPLPAEISAVPGALQILR 302 (306)
T ss_pred EEeEEEEEEcC--------CcceecCCCcCCCCceEEEEEcCeEEEEC
Confidence 99999999863 24789999998544455555555544443
No 6
>PRK13337 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.1e-48 Score=395.49 Aligned_cols=291 Identities=25% Similarity=0.363 Sum_probs=256.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
++|+++|+||.||++++.+.| .++.+.|++++++++++.|++++|+.++++++...++|.||++|||||+|||+|||+.
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~-~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~ 79 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNL-PDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAE 79 (304)
T ss_pred CceEEEEECCcccchhHHHHH-HHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhh
Confidence 478999999999999887778 4788899999999999999999999999998877789999999999999999999997
Q ss_pred CcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCeeeeeEEEEEeCCeeEEEEEeeeeeee
Q 011290 189 REDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLV 268 (489)
Q Consensus 189 ~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~lDl~~v~~~~~~~fs~~~~~~G~~ 268 (489)
+.+ ++|||+||+ ||+|+||++| |+|.++..|+..|..|..+++|++.+++ ++|. +++++|++
T Consensus 80 ~~~-----~~~lgiiP~-----GT~NdfAr~l----gi~~~~~~a~~~i~~g~~~~vDlg~vn~---~~fl-n~~g~G~~ 141 (304)
T PRK13337 80 KEN-----RPKLGIIPV-----GTTNDFARAL----HVPRDIEKAADVIIEGHTVPVDIGKANN---RYFI-NIAGGGRL 141 (304)
T ss_pred CCC-----CCcEEEECC-----cCHhHHHHHc----CCCCCHHHHHHHHHcCCeEEEEEEEECC---EEEE-eeehhhHH
Confidence 642 589999999 9999999999 8999999999999999999999999974 6664 47999999
Q ss_pred eccccc--cccccccCchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCC
Q 011290 269 ADIDIE--SEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQG 346 (489)
Q Consensus 269 adv~~~--se~~R~mG~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 346 (489)
+++... ...++++|.++|.+.+++.+.+.+.|+.+++.
T Consensus 142 a~v~~~~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~---------------------------------------- 181 (304)
T PRK13337 142 TELTYEVPSKLKTMLGQLAYYLKGIEMLPSLKATDVRIEY---------------------------------------- 181 (304)
T ss_pred HHHHHhcCHHHhcCcccHHHHHHHHHHHhhCCCceEEEEE----------------------------------------
Confidence 999865 33456789999999999888887777766531
Q ss_pred CcccCCCCceEEEeecEEEEEEeeccCCCCCCCcCCCCccCCCeEEEEEEecCChHHHHHHHHhhccCCcccCCcEEEEE
Q 011290 347 PDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLK 426 (489)
Q Consensus 347 ~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~aP~A~~~DG~ldlilv~~~s~~~ll~~l~~~~~G~~~~~~~V~~~k 426 (489)
+++.++.++.++.++|.+++|+++.++|+|.++||.||++++++.+++++++++..+..|+|.+.|.|++++
T Consensus 182 --------d~~~~~~~~~~~~v~n~~~~gg~~~~~p~a~~~DG~ldv~iv~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~ 253 (304)
T PRK13337 182 --------DGKLFQGEIMLFLLGLTNSVGGFEKLAPDASLDDGYFDLIIVKKANLAELIHIATLALRGEHIKHPKVIYTK 253 (304)
T ss_pred --------CCeEEEeEEEEEEEEcCcccCCccccCCcccCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCcCCCCcEEEEE
Confidence 112345567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEEEEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCcccccc
Q 011290 427 VKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 473 (489)
Q Consensus 427 vk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~~~~p 473 (489)
+++++|++. ++..+++|||+.+..|+++++.|++|.++.|
T Consensus 254 ~~~~~i~~~-------~~~~~~iDGE~~~~~p~~i~v~p~al~v~~p 293 (304)
T PRK13337 254 ANRIKVSSF-------DKMQLNLDGEYGGKLPAEFENLYRHIEVFVP 293 (304)
T ss_pred ccEEEEEcC-------CCCeEEeCCCcCCCCCEEEEEecceEEEEec
Confidence 999999975 3568999999998778888888888887765
No 7
>PRK13059 putative lipid kinase; Reviewed
Probab=100.00 E-value=3.2e-48 Score=390.34 Aligned_cols=289 Identities=23% Similarity=0.338 Sum_probs=244.6
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
++++++|+||.||++++.+.| +++++.|.++++++.++.|+..+++ +.++++...++|.||++|||||+|||+|||++
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~-~~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~ 78 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISEL-DKVIRIHQEKGYLVVPYRISLEYDL-KNAFKDIDESYKYILIAGGDGTVDNVVNAMKK 78 (295)
T ss_pred CcEEEEEECCcccchhHHHHH-HHHHHHHHHCCcEEEEEEccCcchH-HHHHHHhhcCCCEEEEECCccHHHHHHHHHHh
Confidence 368999999999999987778 4789999999999988888776654 55555555689999999999999999999997
Q ss_pred CcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCeeeeeEEEEEeCCeeEEEEEeeeeeee
Q 011290 189 REDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLV 268 (489)
Q Consensus 189 ~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~lDl~~v~~~~~~~fs~~~~~~G~~ 268 (489)
+. .++|||+||+ ||+|+||++| |+|.++.+|+..|..|+.+++|++.+++ ++|. +++++|++
T Consensus 79 ~~-----~~~~lgviP~-----GTgNdfAr~l----gi~~~~~~a~~~i~~g~~~~vDlg~v~~---~~f~-n~~~~G~~ 140 (295)
T PRK13059 79 LN-----IDLPIGILPV-----GTANDFAKFL----GMPTDIGEACEQILKSKPKKVDLGKIND---KYFI-NVASTGLF 140 (295)
T ss_pred cC-----CCCcEEEECC-----CCHhHHHHHh----CCCCCHHHHHHHHHhCCcEEeeEEEECC---EEEE-EEEeeeec
Confidence 53 3689999999 9999999999 8999999999999999999999999974 5665 58999999
Q ss_pred ecccccc--ccccccCchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCC
Q 011290 269 ADIDIES--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQG 346 (489)
Q Consensus 269 adv~~~s--e~~R~mG~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 346 (489)
|++.... +.++++|+++|.+.+++.+++.+.|+.+|..
T Consensus 141 a~v~~~~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~---------------------------------------- 180 (295)
T PRK13059 141 TDVSQKTDVNLKNTIGKLAYYLKGLEELPNFRKLKVKVTS---------------------------------------- 180 (295)
T ss_pred hhhhhhccHHHhhCcchHHHHHHHHHHHhcCCCeeEEEEE----------------------------------------
Confidence 9999875 3556789999999999999888877776642
Q ss_pred CcccCCCCceEEEeecEEEEEEeeccCCCCCCCcCCCCccCCCeEEEEEEecCChHHHHHHHHhhccCCcccCCc-EEEE
Q 011290 347 PDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPY-VAYL 425 (489)
Q Consensus 347 ~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~aP~A~~~DG~ldlilv~~~s~~~ll~~l~~~~~G~~~~~~~-V~~~ 425 (489)
+++.++++..++.++|.+|+|+ +.++|+|.++||.||++++++.+++++++++..+..|+|...+. |+++
T Consensus 181 --------d~~~~~~~~~~~~v~N~~~~Gg-~~~~p~a~~~DG~Ldv~i~~~~~~~~~l~~~~~~~~G~~~~~~~~v~~~ 251 (295)
T PRK13059 181 --------EEVNFDGDMYLMLVFNGQTAGN-FNLAYKAEVDDGLLDVIIIKACPIIDLIPLFIKVLKGEHLEDVNGLIYF 251 (295)
T ss_pred --------CCEEEEeeEEEEEEEcCccccC-cccCCcccCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCccCCCccEEEE
Confidence 1134456777888999999984 69999999999999999999999999999999999999999998 9999
Q ss_pred EEeEEEEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCcccccc
Q 011290 426 KVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 473 (489)
Q Consensus 426 kvk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~~~~p 473 (489)
++++++|++. ++..+++|||+.+..|+++++.|++|.++.|
T Consensus 252 ~~~~i~i~~~-------~~~~~~~DGE~~~~~p~~i~v~p~al~v~~p 292 (295)
T PRK13059 252 KTDKLEIESN-------EEIVTDIDGERGPDFPLNIECIKGGLKVLGI 292 (295)
T ss_pred EeeEEEEEeC-------CCceEEeCCCcCCCCcEEEEEecCeeEEEec
Confidence 9999999975 3578999999986555555555555555443
No 8
>PRK13055 putative lipid kinase; Reviewed
Probab=100.00 E-value=4.7e-48 Score=395.45 Aligned_cols=294 Identities=22% Similarity=0.344 Sum_probs=254.6
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC-ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~-~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~ 187 (489)
++|++||+||.||++++.+.| +++++.|+.++++++++.|+ +.+|+.++++++...++|.||++|||||+|||+|||+
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~-~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~ 80 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNV-ADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIA 80 (334)
T ss_pred CceEEEEECCCCCchhHHHHH-HHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHh
Confidence 579999999999999988888 58999999999999988776 5689999999887778999999999999999999999
Q ss_pred cCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCC-cHHHHHHHHHcCCeeeeeEEEEEeCCeeEEEEEeeeee
Q 011290 188 EREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPC-KASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWG 266 (489)
Q Consensus 188 ~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~-~~~~A~~~Ii~G~~~~lDl~~v~~~~~~~fs~~~~~~G 266 (489)
... ..+|||+||+ ||+|+||++| |+|. ++.+|+..|.+|+++++|++.+++ .++|. +++++|
T Consensus 81 ~~~-----~~~~LgiiP~-----GTgNdfAr~L----gi~~~~~~~a~~~l~~g~~~~vD~g~v~~--~~~F~-n~ag~G 143 (334)
T PRK13055 81 PLE-----KRPKMAIIPA-----GTTNDYARAL----KIPRDNPVEAAKVILKNQTIKMDIGRANE--DKYFI-NIAAGG 143 (334)
T ss_pred hcC-----CCCcEEEECC-----CchhHHHHHc----CCCCcCHHHHHHHHHcCCcEEeeEEEECC--CcEEE-EEehhc
Confidence 753 2589999999 9999999999 8998 799999999999999999999963 36665 479999
Q ss_pred eeecccccc--ccccccCchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCccccccccc
Q 011290 267 LVADIDIES--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGY 344 (489)
Q Consensus 267 ~~adv~~~s--e~~R~mG~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (489)
++|++.... ..++++|+++|.+.+++.+.+.+.|+.+|++.
T Consensus 144 ~da~v~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~~~i~~d------------------------------------- 186 (334)
T PRK13055 144 SLTELTYSVPSQLKSMFGYLAYLAKGAELLPRVSPVPVRITYD------------------------------------- 186 (334)
T ss_pred cchHHHHhcCHHHHhhccHHHHHHHHHHHHHhcCCeeEEEEEC-------------------------------------
Confidence 999998653 34457899999999999998888887776521
Q ss_pred CCCcccCCCCceEEEeecEEEEEEeeccCCCCCCCcCCCCccCCCeEEEEEEecCChHHHHHHHHhhcc-CCcccCCcEE
Q 011290 345 QGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNK-GGHVESPYVA 423 (489)
Q Consensus 345 ~g~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~aP~A~~~DG~ldlilv~~~s~~~ll~~l~~~~~-G~~~~~~~V~ 423 (489)
+ ...++++.+++++|.+++|+++.++|+|.++||.||++++++.+++++++++..+.. |+|.+.+.|+
T Consensus 187 -~----------~~~~~~~~~~~v~n~~~~Gg~~~~~p~a~~~DG~ldv~i~~~~~~~~~l~~~~~~~~~G~~~~~~~v~ 255 (334)
T PRK13055 187 -E----------GVFEGKISMFFLALTNSVGGFEQIVPDAKLDDGKFTLIIVKTANLFELLHLMALILNGGKHIDDPRVI 255 (334)
T ss_pred -C----------EEEEEEEEEEEEEcCcccCCccccCCCCcCCCceEEEEEEcCCCHHHHHHHHHHHHhCCCCCCCCcEE
Confidence 1 123456677889999999999999999999999999999999999999999999998 9999999999
Q ss_pred EEEEeEEEEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCcccccc
Q 011290 424 YLKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 473 (489)
Q Consensus 424 ~~kvk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~~~~p 473 (489)
|+++++++|++.. .++..+++|||+....|+++++.|++|.++.|
T Consensus 256 ~~~~~~i~I~~~~-----~~~~~~~iDGE~~~~~pv~i~v~p~al~v~~p 300 (334)
T PRK13055 256 YIKTSKLTIEPLG-----DDRLMVNLDGEYGGDAPMTFENLKQHIEFFAN 300 (334)
T ss_pred EEEccEEEEEeCC-----CCcceEeeCCCcCCCCcEEEEEEcCeEEEEeC
Confidence 9999999999752 13468999999998777777777777777765
No 9
>PRK13057 putative lipid kinase; Reviewed
Probab=100.00 E-value=3.9e-47 Score=381.11 Aligned_cols=281 Identities=23% Similarity=0.327 Sum_probs=241.6
Q ss_pred EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCc
Q 011290 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDW 192 (489)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~ 192 (489)
++|+||.||+++ +.| +++++.|+.+++++.+..|++.+|+.++++++. .++|.||++|||||+|||+|+|+.+
T Consensus 1 ~~I~Np~sg~~~--~~~-~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~-~~~d~iiv~GGDGTv~~v~~~l~~~--- 73 (287)
T PRK13057 1 LLLVNRHARSGR--AAL-AAARAALEAAGLELVEPPAEDPDDLSEVIEAYA-DGVDLVIVGGGDGTLNAAAPALVET--- 73 (287)
T ss_pred CEEECCCCCCcc--hhH-HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHH-cCCCEEEEECchHHHHHHHHHHhcC---
Confidence 489999999886 356 589999999999999999999999999999854 6799999999999999999999865
Q ss_pred cccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCeeeeeEEEEEeCCeeEEEEEeeeeeeeeccc
Q 011290 193 NDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADID 272 (489)
Q Consensus 193 ~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~lDl~~v~~~~~~~fs~~~~~~G~~adv~ 272 (489)
++|||+||+ ||+|+||++| |++.++.+|+..|..|+.+++|++.+++ ++|. +++++|++|++.
T Consensus 74 ----~~~lgiiP~-----GT~Ndfar~L----g~~~~~~~a~~~i~~~~~~~vD~g~~~~---~~f~-n~~g~G~da~v~ 136 (287)
T PRK13057 74 ----GLPLGILPL-----GTANDLARTL----GIPLDLEAAARVIATGQVRRIDLGWVNG---HYFF-NVASLGLSAELA 136 (287)
T ss_pred ----CCcEEEECC-----CCccHHHHHc----CCCCCHHHHHHHHHcCCeEEeeEEEECC---EEEE-EEEecCccHHHH
Confidence 689999999 9999999999 8898999999999999999999999963 5665 479999999998
Q ss_pred cc--cccccccCchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCccc
Q 011290 273 IE--SEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVD 350 (489)
Q Consensus 273 ~~--se~~R~mG~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 350 (489)
.. .++++.+|+++|.+.+++.+.+.+.|+.+++. +|
T Consensus 137 ~~~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~l~~--------------------------------------d~---- 174 (287)
T PRK13057 137 RRLTKELKRRWGTLGYAIAALRVLRRSRPFTAEIEH--------------------------------------DG---- 174 (287)
T ss_pred HHhhHHhhccCChhHHHHHHHHHHhhCCCeEEEEEE--------------------------------------CC----
Confidence 65 34455679999999999999888777766531 11
Q ss_pred CCCCceEEEeecEEEEEEeeccCCCCCCCcCCCCccCCCeEEEEEEecCChHHHHHHHHhhccCCcccCCcEEEEEEeEE
Q 011290 351 LKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAF 430 (489)
Q Consensus 351 ~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~aP~A~~~DG~ldlilv~~~s~~~ll~~l~~~~~G~~~~~~~V~~~kvk~~ 430 (489)
...+.++.++.++|.+++|+++.++|+|.++||.||+++++..++++++.++..+..|+|.+.+.|.+++++++
T Consensus 175 ------~~~~~~~~~~~v~N~~~~gg~~~~~p~a~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~ 248 (287)
T PRK13057 175 ------RTERVKTLQVAVGNGRYYGGGMTVAHDATIDDGRLDLYSLEVAHWWRLLALLPALRRGRHGEWPDVRAFRTTEL 248 (287)
T ss_pred ------EEEEEEEEEEEEecCcccCCCcccCCCCCCCCceEEEEEecCCCHHHHHHHHHHHhcCCccCCCcEEEEEeeEE
Confidence 23344667788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCccccc
Q 011290 431 ILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYD 472 (489)
Q Consensus 431 ~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~~~~ 472 (489)
+|++. ++.++++|||..+..|+++++.|++|..+.
T Consensus 249 ~i~~~-------~~~~~~~DGE~~~~~p~~i~v~p~al~v~~ 283 (287)
T PRK13057 249 ELRTR-------KPRPINTDGELTTYTPAHFRVLPKALRVLA 283 (287)
T ss_pred EEEeC-------CCcEEeeCCccCCCCCEEEEEECCeEEEEc
Confidence 99975 356899999998655555555555555544
No 10
>PRK00861 putative lipid kinase; Reviewed
Probab=100.00 E-value=4.2e-47 Score=383.18 Aligned_cols=288 Identities=22% Similarity=0.303 Sum_probs=240.9
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
++++++|+||.||++++.+.| +++++.|+.. ++++++.|++++||.++++++...++|.||++|||||+|||+|+|+.
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~-~~i~~~l~~~-~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~~l~~ 79 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDL-ALIRAILEPE-MDLDIYLTTPEIGADQLAQEAIERGAELIIASGGDGTLSAVAGALIG 79 (300)
T ss_pred CceEEEEECCCCCCCchhhhH-HHHHHHHHhc-CceEEEEccCCCCHHHHHHHHHhcCCCEEEEECChHHHHHHHHHHhc
Confidence 468999999999999988777 5788899874 89999999999999999999877889999999999999999999986
Q ss_pred CcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCeeeeeEEEEEeCCeeEEEEEeeeeeee
Q 011290 189 REDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLV 268 (489)
Q Consensus 189 ~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~lDl~~v~~~~~~~fs~~~~~~G~~ 268 (489)
. ++|||+||+ ||+|+||++| |+|.++..|+..|..|+.+++|++.++. ++|.+ ++++||+
T Consensus 80 ~-------~~~lgviP~-----GTgNdfAr~l----gi~~~~~~a~~~i~~g~~~~iDlg~vn~---~~fin-~a~~G~~ 139 (300)
T PRK00861 80 T-------DIPLGIIPR-----GTANAFAAAL----GIPDTIEEACRTILQGKTRRVDVAYCNG---QPMIL-LAGIGFE 139 (300)
T ss_pred C-------CCcEEEEcC-----CchhHHHHHc----CCCCCHHHHHHHHHcCCcEEeeEEEECC---EEEEE-EEeccHH
Confidence 4 689999999 9999999999 8999999999999999999999999973 56654 7999999
Q ss_pred eccccccc--cccccCchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCC
Q 011290 269 ADIDIESE--KYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQG 346 (489)
Q Consensus 269 adv~~~se--~~R~mG~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 346 (489)
|++....+ .++++|.++|.+.+++.+++.+.|+.+|+.. |
T Consensus 140 a~v~~~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~d--------------------------------------g 181 (300)
T PRK00861 140 AETVEEADREAKNRFGILAYILSGLQQLRELESFEVEIETE--------------------------------------D 181 (300)
T ss_pred HHHHHHhhHHHHhcccHHHHHHHHHHHhccCCCeeEEEEEC--------------------------------------C
Confidence 99987643 4567899999999999999888888776421 1
Q ss_pred CcccCCCCceEEEeecEEEEEEeeccCCCCCC-CcCCCCccCCCeEEEEEEecCChHHHHH----HHHhhccCCcccCCc
Q 011290 347 PDVDLKNLEWRIINGPFVAVWLHNVPWGSENT-MAAPDAKFSDGYLDLIIIKDCPKLALFS----LLSNLNKGGHVESPY 421 (489)
Q Consensus 347 ~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~-~~aP~A~~~DG~ldlilv~~~s~~~ll~----~l~~~~~G~~~~~~~ 421 (489)
..++.+..++.++|.++++..+ .-.|+|.++||.||++++++.+++++++ ++..+..|+|.+.+.
T Consensus 182 ----------~~~~~~~~~i~v~N~~~~~~~~~~g~p~a~~~DG~ldv~iv~~~~~~~~l~~~~~l~~~~~~g~~~~~~~ 251 (300)
T PRK00861 182 ----------QIITTNAVAVTVANAAPPTSVLAQGPGAVIPDDGLLDVTIVAPKNLAEAVAASYHLLQTALQGNPAERDD 251 (300)
T ss_pred ----------eEEEEEEEEEEEECCCCcccccccCCCCCCCCCceEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 1234456678899998654433 2368999999999999999999999986 445567799999999
Q ss_pred EEEEEEeEEEEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCcccccc
Q 011290 422 VAYLKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 473 (489)
Q Consensus 422 V~~~kvk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~~~~p 473 (489)
|+++++++++|++. ++..+++|||+.+..|+++++.|++|..+.|
T Consensus 252 v~~~~~~~i~I~~~-------~~~~~~~DGE~~~~~p~~i~v~p~al~v~~p 296 (300)
T PRK00861 252 IGYLRAKQVKITTD-------PPQKVVIDGEVVGTTPIEIECLPRSLKVFAP 296 (300)
T ss_pred eEEEEccEEEEEeC-------CCeEEEECCccCCCceEEEEEECCEEEEEeC
Confidence 99999999999975 3578999999986555555555555554444
No 11
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=100.00 E-value=2.4e-46 Score=376.55 Aligned_cols=292 Identities=29% Similarity=0.444 Sum_probs=259.3
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~ 187 (489)
+++++.+|+||.||++++.+.| +++++.|+.++.++.++.|+..+||.++++++...+||.||++|||||+|||+|||+
T Consensus 1 ~~~~~~~i~Np~sG~~~~~~~~-~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~ 79 (301)
T COG1597 1 RMKKALLIYNPTSGKGKAKKLL-REVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLA 79 (301)
T ss_pred CCceEEEEEcccccccchhhHH-HHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHh
Confidence 4689999999999999999888 589999999999999999999999999999998889999999999999999999999
Q ss_pred cCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCc-HHHHHHHHHcCCeeeeeEEEEEeCCeeEEEEEeeeee
Q 011290 188 EREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCK-ASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWG 266 (489)
Q Consensus 188 ~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~-~~~A~~~Ii~G~~~~lDl~~v~~~~~~~fs~~~~~~G 266 (489)
.++. .|||+||+ ||+|+||++| |+|.+ +..|+..|..|+++.+|++.+++ +++| ++++++|
T Consensus 80 ~~~~------~~LgilP~-----GT~NdfAr~L----gip~~~~~~Al~~i~~g~~~~vDlg~~~~--~~~f-in~a~~G 141 (301)
T COG1597 80 GTDD------PPLGILPG-----GTANDFARAL----GIPLDDIEAALELIKSGETRKVDLGQVNG--RRYF-INNAGIG 141 (301)
T ss_pred cCCC------CceEEecC-----CchHHHHHHc----CCCchhHHHHHHHHHcCCeEEEeehhcCC--cceE-EEEeecc
Confidence 9852 22999999 9999999999 99995 99999999999999999997763 2355 4589999
Q ss_pred eeecccccccccccc--CchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCccccccccc
Q 011290 267 LVADIDIESEKYRWM--GSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGY 344 (489)
Q Consensus 267 ~~adv~~~se~~R~m--G~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (489)
++|++++..+..+|+ |.++|.+.++..+...++++.+|.|.
T Consensus 142 ~~a~~~~~~~~~~k~~~g~~~y~~~~~~~l~~~~~~~~~i~~d------------------------------------- 184 (301)
T COG1597 142 FDAEVVAAVEEERKKGFGRLAYALAGLAVLARLKPFRIEIEYD------------------------------------- 184 (301)
T ss_pred hhHHHHHhhcHHHHhccchHHHHHHHHHhccccCCCcEEEEEc-------------------------------------
Confidence 999999998776664 99999999999888888888777642
Q ss_pred CCCcccCCCCceEEEeecEEEEEEeeccCCCCCCCcCCCCccCCCeEEEEEEecCChHHHHHHHHhhccCCcccCCcEEE
Q 011290 345 QGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAY 424 (489)
Q Consensus 345 ~g~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~aP~A~~~DG~ldlilv~~~s~~~ll~~l~~~~~G~~~~~~~V~~ 424 (489)
+ +..+++..++.+.|..++|++..++|++.++||.+|++++++.+++.+++++..+.+|+|.+.+.|+|
T Consensus 185 -~----------~~~~~~~~~~~~~~~~~~gg~~~~~p~a~~~dG~l~~~i~~~~~~~~~~~l~~~~~~G~~~~~~~v~~ 253 (301)
T COG1597 185 -G----------KTFEGEALALLVFNGNSYGGGMKLAPDASLDDGLLDVYILKPQSLLELLALLPDLLRGKHLENPDVEY 253 (301)
T ss_pred -C----------cEEEEEEEEEEEecCcccccccccCCcCCCCCceEEEEEEccccHHHHHHHHHHHhCCCccCCCCeEE
Confidence 1 23455667788888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeEEEEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCcccccc
Q 011290 425 LKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 473 (489)
Q Consensus 425 ~kvk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~~~~p 473 (489)
++++.++|++. .+..+++|||..+..|+++++.|++|..+.|
T Consensus 254 ~~~~~~~i~~~-------~~~~~~~DGE~~~~~p~~i~~~p~al~vl~p 295 (301)
T COG1597 254 LRAKKLEITSD-------PPIPVNLDGEYLGKTPVTIEVLPGALRVLVP 295 (301)
T ss_pred EeccEEEEEcC-------CCceEeeCCccCCCCcEEEEEecccEEEEcC
Confidence 99999999986 3678999999998887888888888877766
No 12
>PRK13054 lipid kinase; Reviewed
Probab=100.00 E-value=1e-45 Score=373.15 Aligned_cols=290 Identities=20% Similarity=0.240 Sum_probs=241.4
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~ 187 (489)
.++++++|+||.++. .+.|. ++.+.|.++++++++..|++++||.++++++...++|.||++|||||+|||+|||+
T Consensus 2 ~~~~~~~i~N~~~~~---~~~~~-~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~ 77 (300)
T PRK13054 2 TFPKSLLILNGKSAG---NEELR-EAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALA 77 (300)
T ss_pred CCceEEEEECCCccc---hHHHH-HHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHH
Confidence 367999999998763 34564 57778999999999999999999999999987778999999999999999999998
Q ss_pred cCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCeeeeeEEEEEeCCeeEEEEEeeeeee
Q 011290 188 EREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGL 267 (489)
Q Consensus 188 ~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~lDl~~v~~~~~~~fs~~~~~~G~ 267 (489)
.++. ..++|||+||+ ||+|+||++| |+|.++..|+..|..|+.+++|++.+++ +++|. +++++||
T Consensus 78 ~~~~---~~~~~lgiiP~-----GTgNdfar~l----gi~~~~~~a~~~i~~g~~~~iDlg~v~~--~~~f~-n~~~~G~ 142 (300)
T PRK13054 78 QLEG---DARPALGILPL-----GTANDFATAA----GIPLEPDKALKLAIEGRAQPIDLARVND--RTYFI-NMATGGF 142 (300)
T ss_pred hhcc---CCCCcEEEEeC-----CcHhHHHHhc----CCCCCHHHHHHHHHhCCceEEEEEEEcC--ceEEE-EEeecch
Confidence 7531 13689999999 9999999999 8999999999999999999999999974 23665 4799999
Q ss_pred eecccccc-cc-ccccCchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccC
Q 011290 268 VADIDIES-EK-YRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQ 345 (489)
Q Consensus 268 ~adv~~~s-e~-~R~mG~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (489)
++++..+. ++ ++.+|+++|.+.+++++++.+.|+.+|+. +
T Consensus 143 ~a~v~~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~--------------------------------------d 184 (300)
T PRK13054 143 GTRVTTETPEKLKAALGGVAYLIHGLMRMDTLKPDRCEIRG--------------------------------------P 184 (300)
T ss_pred hHHHHHhhHHHHHhccchHHHHHHHHHHHhhCCCeEEEEEe--------------------------------------C
Confidence 99998764 33 34689999999999999988888776642 0
Q ss_pred CCcccCCCCceEEEeecEEEEEEeeccCCCCCCCcCCCCccCCCeEEEEEEecCChHHHHHHHHhhccCCcccCCcEEEE
Q 011290 346 GPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYL 425 (489)
Q Consensus 346 g~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~aP~A~~~DG~ldlilv~~~s~~~ll~~l~~~~~G~~~~~~~V~~~ 425 (489)
+. ..++++.++.++|.+++|+++.++|+|.++||.||++++++ ++.++.+++.+..|++...|.|.++
T Consensus 185 -------~~---~~~~~~~~~~v~N~~~~ggg~~~~p~a~~~DG~ldv~~~~~--~~~~l~~l~~~~~g~~~~~~~v~~~ 252 (300)
T PRK13054 185 -------DF---HWQGDALVIGIGNGRQAGGGQQLCPEALINDGLLDLRILPA--PQELLPTLLSTLTGGSEDNPNIIRA 252 (300)
T ss_pred -------Cc---EEEeeEEEEEEECCCcCCCCcccCCCCcCCCCeEEEEEECC--HHHHHHHHHHHHhCCCCCCCcEEEE
Confidence 11 22456778899999999999999999999999999999998 6778888877777766668999999
Q ss_pred EEeEEEEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCcccccc
Q 011290 426 KVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 473 (489)
Q Consensus 426 kvk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~~~~p 473 (489)
++++++|++. ++..+++|||+.+..|+++++.|++|..+.|
T Consensus 253 ~~~~v~i~~~-------~~~~~~iDGE~~~~~p~~i~v~p~al~vl~p 293 (300)
T PRK13054 253 RLPWLEIQAP-------HELTFNLDGEPLSGRHFRIEVLPAALRCRLP 293 (300)
T ss_pred ECCEEEEEcC-------CCCEEEeCCCcCCCccEEEEEEcCeeEEEeC
Confidence 9999999974 3578999999986565666666666655554
No 13
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=100.00 E-value=1.4e-45 Score=370.80 Aligned_cols=285 Identities=21% Similarity=0.227 Sum_probs=235.3
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCc
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~ 190 (489)
++++|+||.||.. +.|. ++.+.|++++++++++.|++++||.++++++...++|.||++|||||+|||+|||+.+.
T Consensus 1 ~~~~I~N~~~~~~---~~~~-~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~~ 76 (293)
T TIGR03702 1 KALLILNGKQADN---EDVR-EAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQIR 76 (293)
T ss_pred CEEEEEeCCccch---hHHH-HHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhhC
Confidence 4789999998733 2454 67788999999999999999999999999987778999999999999999999998764
Q ss_pred CccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCeeeeeEEEEEeCCeeEEEEEeeeeeeeec
Q 011290 191 DWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVAD 270 (489)
Q Consensus 191 ~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~lDl~~v~~~~~~~fs~~~~~~G~~ad 270 (489)
++ ..+|||+||+ ||||+||++| |+|.++.+|+..|..|+++++|++.++. +++|. +++++||+|+
T Consensus 77 ~~---~~~~lgiiP~-----GTgNdfAr~l----~ip~~~~~a~~~i~~g~~~~iDlg~v~~--~~~f~-n~~~~G~da~ 141 (293)
T TIGR03702 77 DD---AAPALGLLPL-----GTANDFATAA----GIPLEPAKALKLALNGAAQPIDLARVNG--KHYFL-NMATGGFGTR 141 (293)
T ss_pred CC---CCCcEEEEcC-----CchhHHHHhc----CCCCCHHHHHHHHHhCCceeeeEEEECC--ccEEE-EEeecccchH
Confidence 32 3579999999 9999999999 9999999999999999999999999973 25665 5899999999
Q ss_pred ccccc--ccccccCchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCc
Q 011290 271 IDIES--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPD 348 (489)
Q Consensus 271 v~~~s--e~~R~mG~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 348 (489)
+..+. ++++++|.++|.+++++.+.+.+.|+.++...
T Consensus 142 v~~~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~~----------------------------------------- 180 (293)
T TIGR03702 142 VTTETSEKLKKALGGAAYLITGLTRFSELTAASCEFRGP----------------------------------------- 180 (293)
T ss_pred hhhhhhHHHHhccchHHHHHHHHHHHhhCCCeEEEEEEC-----------------------------------------
Confidence 98653 34456899999999999998887776655310
Q ss_pred ccCCCCceEEEeecEEEEEEeeccCCCCCCCcCCCCccCCCeEEEEEEecCChHHHHHHHHhhccCCcccCCcEEEEEEe
Q 011290 349 VDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVK 428 (489)
Q Consensus 349 ~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~aP~A~~~DG~ldlilv~~~s~~~ll~~l~~~~~G~~~~~~~V~~~kvk 428 (489)
. ..+++++.++.++|.+|+|+++.++|+|.++||.||++++++ +..+++++..+.+|.+ .+.+.+++++
T Consensus 181 ----~---~~~~~~~~~~~v~N~~~~GGg~~i~P~A~~~DG~Ldv~~v~~--~~~~~~~l~~~~~g~~--~~~~~~~~~~ 249 (293)
T TIGR03702 181 ----D---FHWEGDFLALGIGNGRQAGGGQVLCPDALINDGLLDVRILPA--PELLPATLSTLFGGDK--NPEFVRARLP 249 (293)
T ss_pred ----C---EEEEeeEEEEEEECCCcCCCCceeCCCCccCCceEEEEEeCC--HHHHHHHHHHHhcCCC--CCcEEEEEcC
Confidence 0 123456778889999999999999999999999999999987 5778888888888863 4678889999
Q ss_pred EEEEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCcccccc
Q 011290 429 AFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 473 (489)
Q Consensus 429 ~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~~~~p 473 (489)
+++|+.. ++..+++|||.++..|++++|.|++|.++.|
T Consensus 250 ~i~i~~~-------~~~~~~vDGE~~~~~p~~i~v~p~al~v~~p 287 (293)
T TIGR03702 250 WLEIEAP-------QPLTFNLDGEPLSGRHFRIEVLPGALRCHLP 287 (293)
T ss_pred EEEEEeC-------CCcEEEECCCcCCCceEEEEEEcCeEEEEcC
Confidence 9999975 3578999999986555555556655555543
No 14
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=100.00 E-value=2.4e-45 Score=369.14 Aligned_cols=287 Identities=25% Similarity=0.324 Sum_probs=245.2
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
++|+++|+||.||++++.+.| +++++.|+..++++.++.|++.+|+.++++++...++|.||++|||||+|||+|+|..
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~ 79 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPL-REVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQ 79 (293)
T ss_pred CceEEEEECCCccchhhHHHH-HHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhc
Confidence 478999999999999888877 5799999999999999999999999988876655679999999999999999999987
Q ss_pred CcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCeeeeeEEEEEeCCeeE-EEEEeeeeee
Q 011290 189 REDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRF-HSVLMLAWGL 267 (489)
Q Consensus 189 ~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~lDl~~v~~~~~~~-fs~~~~~~G~ 267 (489)
..+ .+|||+||+ ||+|+||++| |++.++.+++..+..|+.+++|++.+++ ++ |. +++++|+
T Consensus 80 ~~~-----~~~lgiiP~-----Gt~N~~a~~l----~i~~~~~~~~~~l~~~~~~~~Dlg~v~~---~~~fl-n~~g~G~ 141 (293)
T TIGR00147 80 LDD-----IPALGILPL-----GTANDFARSL----GIPEDLDKAAKLVIAGDARAIDMGQVNK---QYCFI-NMAGGGF 141 (293)
T ss_pred CCC-----CCcEEEEcC-----cCHHHHHHHc----CCCCCHHHHHHHHHcCCceEEEEEEECC---eEEEE-EEEeech
Confidence 531 469999999 9999999999 8888999999999999999999999974 55 54 5799999
Q ss_pred eecccccc--ccccccCchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccC
Q 011290 268 VADIDIES--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQ 345 (489)
Q Consensus 268 ~adv~~~s--e~~R~mG~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (489)
++++.... +.++.+|.++|.+++++.+.+.+.|+.+|.. +
T Consensus 142 ~a~v~~~~~~~~k~~~g~~~Y~~~~l~~l~~~~~~~~~i~~--------------------------------------d 183 (293)
T TIGR00147 142 GTEITTETPEKLKAALGSLSYILSGLMRMDTLQPFRCEIRG--------------------------------------E 183 (293)
T ss_pred hhHhHhhCCHHHHhccchHHHHHHHHHHHhhCCCeeEEEEE--------------------------------------C
Confidence 99987654 3344689999999999998887777766542 1
Q ss_pred CCcccCCCCceEEEeecEEEEEEeeccCCCCCCCcCCCCccCCCeEEEEEEecCChHHHHHHHHhhccCCcccCCcEEEE
Q 011290 346 GPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYL 425 (489)
Q Consensus 346 g~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~aP~A~~~DG~ldlilv~~~s~~~ll~~l~~~~~G~~~~~~~V~~~ 425 (489)
| +.++.+..++.++|.+++|+++.++|++.++||.||++++++.++++++++++.+..|+|...|.|.++
T Consensus 184 ~----------~~~~~~~~~~~v~n~~~~gg~~~~~p~a~~~DG~l~v~~v~~~~~~~~~~~~~~~~~G~~~~~~~v~~~ 253 (293)
T TIGR00147 184 G----------EHWQGEAVVFLVGNGRQAGGGQKLAPDASINDGLLDLRIFTNDNLLPALVLTLMSDEGKHTDNPNIIYG 253 (293)
T ss_pred C----------eEEEeeEEEEEEeCCcccCCCcccCCccccCCCeeEEEEEcCCCHHHHHHHHHHHhcCCCCCCCcEEEE
Confidence 1 233456667788899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCcc
Q 011290 426 KVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLM 469 (489)
Q Consensus 426 kvk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~ 469 (489)
++++++|+.. ++..+++|||++...|+++++.|++|.
T Consensus 254 ~~~~~~i~~~-------~~~~~~iDGE~~~~~p~~i~v~p~al~ 290 (293)
T TIGR00147 254 KASRIDIQTP-------HKITFNLDGEPLGGTPFHIEILPAHLR 290 (293)
T ss_pred EccEEEEEcC-------CCcEEEeCCCcCCCCcEEEEEEhhccE
Confidence 9999999975 356899999998655555555555554
No 15
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=351.58 Aligned_cols=292 Identities=20% Similarity=0.231 Sum_probs=232.0
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.-++++++|+||.||++++.+.+ +++++.|++. ++++++.|++.+|+.++++++..+++|.||++|||||+|||+|+|
T Consensus 240 ~~~~~~~iI~NP~SG~g~~~~~~-~~i~~~L~~~-~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~~l 317 (547)
T PRK12361 240 NIHKRAWLIANPVSGGGKWQEYG-EQIQRELKAY-FDLTVKLTTPEISAEALAKQARKAGADIVIACGGDGTVTEVASEL 317 (547)
T ss_pred ccCCceEEEECCCCCCCcHHHHH-HHHHHHHhcC-CceEEEECCCCccHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHH
Confidence 34678999999999999988877 5889899886 899999999999999999998767899999999999999999999
Q ss_pred hcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCC---CcHHHHHHHHHcCCeeeeeEEEEEeCCeeEEEEEee
Q 011290 187 LEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEP---CKASNAILAVIRGHKRLLDVATILQGKTRFHSVLML 263 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~---~~~~~A~~~Ii~G~~~~lDl~~v~~~~~~~fs~~~~ 263 (489)
... ++|||+||+ ||+|+||++|. |++ .+++.|+..|..|+.+++|++.+++ ++|. +++
T Consensus 318 ~~~-------~~~lgiiP~-----GTgNdfAr~L~---gi~~~~~~~~~a~~~i~~g~~~~iD~g~vn~---~~fl-n~a 378 (547)
T PRK12361 318 VNT-------DITLGIIPL-----GTANALSHALF---GLGSKLIPVEQACDNIIQGHTQRIDTARCND---RLML-LLV 378 (547)
T ss_pred hcC-------CCCEEEecC-----CchhHHHHHhc---CCCCCCccHHHHHHHHHhCCCeEEEEEEEcC---eEEE-EEE
Confidence 864 689999999 99999999983 444 4789999999999999999999974 5664 579
Q ss_pred eeeeeecccccc--ccccccCchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccc
Q 011290 264 AWGLVADIDIES--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQ 341 (489)
Q Consensus 264 ~~G~~adv~~~s--e~~R~mG~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (489)
++|+++++..+. ++++.+|.++|.+++++.+.+.+.|+.+|+..
T Consensus 379 giG~da~v~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~l~i~~d---------------------------------- 424 (547)
T PRK12361 379 GIGFEQKMIESADRERKNALGQLAYLDGLWRAVNENETLTLTVTLD---------------------------------- 424 (547)
T ss_pred eechhHHHHHhccHHHHhccCHHHHHHHHHHHhhcCCCeeEEEEEC----------------------------------
Confidence 999999998664 44567899999999999998888887776521
Q ss_pred cccCCCcccCCCCceEEEeecEEEEEEeeccCCCCCC-CcCCCCccCCCeEEEEEEecCCh--HHHHHHHHhhccC--Cc
Q 011290 342 HGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENT-MAAPDAKFSDGYLDLIIIKDCPK--LALFSLLSNLNKG--GH 416 (489)
Q Consensus 342 ~~~~g~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~-~~aP~A~~~DG~ldlilv~~~s~--~~ll~~l~~~~~G--~~ 416 (489)
|. + ..+.+..++.++|.+.+++.. .-.+.+.++||.||++++++.++ .+++.++..+..| +|
T Consensus 425 ----g~-------~--~~~~~~~~l~v~N~~~~~~~~~~Ggg~~~~~DG~Ldv~~v~~~~~~~~~l~~l~~~~~~g~~~~ 491 (547)
T PRK12361 425 ----DA-------E--PQTISTHSLVVANAAPFTSLLAQGGGEPNMTDGLLDITWLDSGGEPGEQLLSLAELALSGLGKE 491 (547)
T ss_pred ----CC-------C--ceEEEEEEEEEEcCCCcccccccCCCCCCCCCceeEEEEEcCCCcchHHHHHHHHHHHHHhccc
Confidence 10 0 112244556678875432211 01224589999999999998774 5777666555544 56
Q ss_pred ccCCcEEEEEEeEEEEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCcccccc
Q 011290 417 VESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 473 (489)
Q Consensus 417 ~~~~~V~~~kvk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~~~~p 473 (489)
...+.|+++++++++|+.. ++..+++|||+....|+++++.|++|.++.|
T Consensus 492 ~~~~~v~~~~~k~v~I~~~-------~~~~~~iDGE~~~~~p~~i~v~p~al~vlvp 541 (547)
T PRK12361 492 PEANKVHHAHAKKVTISSQ-------KPIKYVIDGELFEDEDLTIEVQPASLKVFVP 541 (547)
T ss_pred CCCCceEEEEeeEEEEEeC-------CceEEEECCccCCceEEEEEEecCceEEEec
Confidence 7789999999999999975 3578999999997777777777777776655
No 16
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.92 E-value=4e-25 Score=196.05 Aligned_cols=127 Identities=41% Similarity=0.683 Sum_probs=109.8
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCC-ceEEEEcCCChHHHHHHHhhcC
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKY-DGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~-d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
|++||+||+||++++. | +++++.|...+.+++++.|++.+++.++++....+.+ |.||++|||||+||++|+|+.+
T Consensus 1 k~~vi~Np~sG~~~~~--~-~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~ 77 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--W-KKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGS 77 (130)
T ss_dssp SEEEEEETTSTTSHHH--H-HHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTS
T ss_pred CEEEEECCCCCCCchh--H-HHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhc
Confidence 5899999999999998 6 7999999999999999999999999999886666677 9999999999999999999998
Q ss_pred cCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHH-HHHHHHcCCeeeeeEEEEEe
Q 011290 190 EDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASN-AILAVIRGHKRLLDVATILQ 252 (489)
Q Consensus 190 ~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~-A~~~Ii~G~~~~lDl~~v~~ 252 (489)
.... ++|||+||+ ||+|+||+++ |++.++.. |+..++.+..+.+|++.++.
T Consensus 78 ~~~~---~~~l~iiP~-----GT~N~~ar~l----g~~~~~~~~a~~~~~~~~~~~~d~~~v~~ 129 (130)
T PF00781_consen 78 DRED---KPPLGIIPA-----GTGNDFARSL----GIPSDPEANAALLIILGRVRKIDVGKVNT 129 (130)
T ss_dssp TSSS-----EEEEEE------SSS-HHHHHT----T--SSHHH-HHHHHHHSEEEEEEEEEETT
T ss_pred CCCc---cceEEEecC-----CChhHHHHHc----CCCCCcHHHHHHHHHhCCCcEeEEEEeCC
Confidence 6432 689999999 9999999999 88888888 88889999999999999863
No 17
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.90 E-value=1.3e-23 Score=208.60 Aligned_cols=189 Identities=30% Similarity=0.473 Sum_probs=153.3
Q ss_pred hcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 105 SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 105 ~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
+..|||+++|++||.+.++++...|.+...|+|..||++++++.|.+++||+.++..++- ..|.|+++|||||+.||+.
T Consensus 56 p~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~t-~~Dii~VaGGDGT~~eVVT 134 (535)
T KOG4435|consen 56 PETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVDT-QEDIIYVAGGDGTIGEVVT 134 (535)
T ss_pred cccccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhcc-CCCeEEEecCCCcHHHhhH
Confidence 456899999999999999999888999999999999999999999999999999999974 4599999999999999999
Q ss_pred HhhcCcCccccCCCcEEEecCcCCCCcccccceeccccc----cCCCCcHHHHHHHHHcCCe---eeeeEEEEEeCC--e
Q 011290 185 GLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDL----VGEPCKASNAILAVIRGHK---RLLDVATILQGK--T 255 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~----~g~~~~~~~A~~~Ii~G~~---~~lDl~~v~~~~--~ 255 (489)
|++.|.. ...|+|++|. |-.|--..+-+.+ +..-..+.+|+.++++++. .++||.. .|+ .
T Consensus 135 Gi~Rrr~----~~~pv~~~P~-----G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~ksv~~fdv~~--~gs~l~ 203 (535)
T KOG4435|consen 135 GIFRRRK----AQLPVGFYPG-----GYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKKSVYAFDVTT--EGSTLA 203 (535)
T ss_pred HHHhccc----ccCceeeccC-----ccchHhhhhhchhhhccchHHHHHHHHHHHHhcccccceEEEEecc--CCCccc
Confidence 9999852 3799999999 7765444333221 1122345688999999998 5666665 333 3
Q ss_pred eEEEEEeeeeeeeeccccccccccccCchhhHHHHHHHHHhccccceEEEEe
Q 011290 256 RFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVSFV 307 (489)
Q Consensus 256 ~~fs~~~~~~G~~adv~~~se~~R~mG~~ry~~~~l~~l~~~r~y~~~i~~~ 307 (489)
+.|.+..++||..-|+.....||.++|+++-..+.++.+++ .|+.++.+.
T Consensus 204 P~fgl~glswG~frdi~~~~~KyWYfgplk~~aA~f~s~lk--~wpak~e~v 253 (535)
T KOG4435|consen 204 PEFGLGGLSWGWFRDIEDTRKKYWYFGPLKRRAAYFWSMLK--RWPAKIECV 253 (535)
T ss_pred cccccCccchhhhhhhhhhhhheeeecHHHHHHHHHHHHHh--cCCCceeEE
Confidence 67999999999999999988999999999887777877764 455554443
No 18
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.89 E-value=1.8e-22 Score=213.88 Aligned_cols=294 Identities=17% Similarity=0.155 Sum_probs=191.2
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
-.+++||+||+||.+.+..+. ..++.+|....+ +++-.+..+.-...+.+++ ++..|++||||||+-+|++.+-+
T Consensus 271 ~~PLlVfvNpKSGg~~G~~ll-~~f~~lLnp~QV-fdl~~~~~p~~gL~l~~~~---~~~riLVcGGDGTvGWVL~~i~~ 345 (634)
T KOG1169|consen 271 WRPLLVFVNPKSGGQQGERLL-RRFRYLLNPVQV-FDLLKRGGPRPGLTLFRDV---PDFRILVCGGDGTVGWVLGCIDK 345 (634)
T ss_pred CcceEEEEecCCcccccHHHH-HHHHHhcChhhE-EecccCCCCchhHHHHHhC---CcceEEEecCCCcchhhhhhHHH
Confidence 356999999999999998765 467777776543 3333333244444555554 34599999999999999999877
Q ss_pred CcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCc---HHHHHHHHHcCCeeeeeEEEEEeC----C-------
Q 011290 189 REDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCK---ASNAILAVIRGHKRLLDVATILQG----K------- 254 (489)
Q Consensus 189 ~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~---~~~A~~~Ii~G~~~~lDl~~v~~~----~------- 254 (489)
.........+|+||+|. ||||++++.|.|+.|.+.. +...+..|..+....+|-++|... +
T Consensus 346 ~n~~~~~~~PpVAilPL-----GTGNDLsR~l~WGgg~~g~~~~~~~iL~~i~~a~v~~lDrW~v~v~~~~~~~~~~~~~ 420 (634)
T KOG1169|consen 346 LNKQNAIPPPPVAILPL-----GTGNDLSRVLRWGGGYPGEDRNLIKILKDIEEAPVTKLDRWKVLVEPQSGELVQYSLK 420 (634)
T ss_pred hhccccCCCCCeEEEec-----CCCCchHhhcCCCCCCCcchhhHHHHHHhhhhccceecceeeEEeecccccccccccc
Confidence 54333445789999999 9999999999998887766 788889999999999999988521 1
Q ss_pred --------eeEEEEEeeeeeeeeccccccccccccCc----------hhhHHHHHHHHHhccccceEEEEecCCCCCCCC
Q 011290 255 --------TRFHSVLMLAWGLVADIDIESEKYRWMGS----------ARIDFYALQRILYLRQYNGRVSFVPAPGFENHG 316 (489)
Q Consensus 255 --------~~~fs~~~~~~G~~adv~~~se~~R~mG~----------~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~ 316 (489)
...+.++.+++|.+|.|.++.+.+|---| +.|.-.|.+..+..+.++-+
T Consensus 421 ~~~~~~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q~~f~~~ck~~~------------- 487 (634)
T KOG1169|consen 421 PPEKGDPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQETFAARCKNLH------------- 487 (634)
T ss_pred CCCcCCCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecchhhHHHhhcCCc-------------
Confidence 02344567999999999998776664333 33322222222211111100
Q ss_pred CCCcccccCcCCCCCCCCCcccccccccCCCcccCCCCceEEEeec--EEEEEEeeccCCCCCCCcCC------------
Q 011290 317 EPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGP--FVAVWLHNVPWGSENTMAAP------------ 382 (489)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~--f~~v~v~N~~~~g~~~~~aP------------ 382 (489)
.++. . ....+|+.++-+ .-.+.+-|.+++++|..+.-
T Consensus 488 ------------------~~i~---i--------~~~~d~~dl~~p~sleGIv~LNIpS~ggG~nlWg~~~~~~~~~~~~ 538 (634)
T KOG1169|consen 488 ------------------LHIK---I--------ELDGDGEDLELPKSLEGIVVLNIPSWGGGSNLWGNSNKSKGNFRGF 538 (634)
T ss_pred ------------------cceE---E--------EEcccceEccCCCCceeEEEEcccccccCcccccccCccccccccc
Confidence 0000 0 011244444322 23678899999999875432
Q ss_pred -CCccCCCeEEEEEEecCChHHHHHHHHhhccCCcccCCcEEEEEEeEEEEEeCCCCCCCCCCceEEecCCccccCCcee
Q 011290 383 -DAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTY 461 (489)
Q Consensus 383 -~A~~~DG~ldlilv~~~s~~~ll~~l~~~~~G~~~~~~~V~~~kvk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~ 461 (489)
.+.-+||.+.++-|++... .+..+..+..+.++.. .......++|... +..++|||||+....|.++
T Consensus 539 ~~~d~~dgliEvvgv~~~~h--~~~~qvgL~~a~rigQ---~~a~~~~~~i~~~-------k~~PMQiDGEPW~Q~p~tI 606 (634)
T KOG1169|consen 539 SEADDDDGLIEVVGVQDSWH--LLQEQVGLESALRIGQ---RLAQCSERVIGTK-------KTFPMQIDGEPWMQPPCTI 606 (634)
T ss_pred cccCCCcCeEEEEEeccchh--hhhhhhccchhhHHHH---HhhccEEEEeccc-------cCcceecCCccccCCCceE
Confidence 1223469999999998643 3333444455544432 0011223335543 5789999999999999998
Q ss_pred EecCC
Q 011290 462 QCDQK 466 (489)
Q Consensus 462 ~~~~~ 466 (489)
++.++
T Consensus 607 ~Ithk 611 (634)
T KOG1169|consen 607 EITHK 611 (634)
T ss_pred EEEec
Confidence 86443
No 19
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.82 E-value=2e-20 Score=164.59 Aligned_cols=108 Identities=31% Similarity=0.402 Sum_probs=82.2
Q ss_pred EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCc
Q 011290 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (489)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T--~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~ 190 (489)
+||+||+||++++.+++ .++++.+... .++.| +...|+.++++++ ..+|.||++|||||+|||+|+|+.+.
T Consensus 1 lvi~NP~sG~~~~~~~~-~~~~~~l~~~----~v~~t~~~~~~~~~~~~~~~--~~~d~vvv~GGDGTi~~vvn~l~~~~ 73 (124)
T smart00046 1 LVFVNPKSGGGKGVKLL-RKFRLLLNPA----QVFDLTKKGPAAALVIFRDL--PKFDRVLVCGGDGTVGWVLNALDKRE 73 (124)
T ss_pred CEEEcCCCCCCccHHHH-HHHHHHcCCc----eEEEEecCChHHHHHHHhhc--CcCCEEEEEccccHHHHHHHHHHhcc
Confidence 58999999999988766 4566666543 34444 4456677776665 36899999999999999999999774
Q ss_pred CccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHH
Q 011290 191 DWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVI 238 (489)
Q Consensus 191 ~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii 238 (489)
.. ...+|||+||+ ||+|+||++| |++.++..+.....
T Consensus 74 ~~--~~~~plgiiP~-----GTgNdfar~l----gi~~~~~~~~~~~~ 110 (124)
T smart00046 74 LP--LPEPPVAVLPL-----GTGNDLARSL----GWGGGYDGEKLLKT 110 (124)
T ss_pred cc--cCCCcEEEeCC-----CChhHHHHHc----CCCCCcccccHHHH
Confidence 32 12389999999 9999999999 77777766554433
No 20
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=99.79 E-value=8.8e-19 Score=180.09 Aligned_cols=284 Identities=20% Similarity=0.217 Sum_probs=183.4
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+-+|+++||+||+||..++.++. ..+-=+|....+ +++- ...+..|.|+-++.. .-.|++||||||+.+++.-|
T Consensus 363 plmkPLLVFVNPKSGGNqGsK~l-q~f~WyLNPRQV-FDls-q~GPK~aLEmyRKV~---nLRILaCGGDGTVGWiLStL 436 (1004)
T KOG0782|consen 363 PLMKPLLVFVNPKSGGNQGSKAL-QTFCWYLNPRQV-FDLS-QLGPKFALEMYRKVV---NLRILACGGDGTVGWILSTL 436 (1004)
T ss_pred CCCCceEEEecCCCCCcchHHHH-HHHHHhcChhhh-eehh-ccCcHHHHHHHHhcc---ceEEEEecCCCceeehhhhh
Confidence 55789999999999999988765 344445554433 3332 346777888877764 25899999999999999987
Q ss_pred hcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHH-HHHHHHHcCCeeeeeEEEEEeC----------C-
Q 011290 187 LEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKAS-NAILAVIRGHKRLLDVATILQG----------K- 254 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~-~A~~~Ii~G~~~~lDl~~v~~~----------~- 254 (489)
-.-. | ...+|+||+|. ||||++|+.++|+.|.+..|. ..+.++..|....+|-+.++-+ +
T Consensus 437 D~L~-l--~p~PPvailPL-----GTGNDLARtlnWGGgytDEPvSkil~~ve~gtvVqLDRW~lhvEpNp~~~pEe~dd 508 (1004)
T KOG0782|consen 437 DNLN-L--PPYPPVAILPL-----GTGNDLARTLNWGGGYTDEPVSKILQAVEHGTVVQLDRWRLHVEPNPSCNPEEEDD 508 (1004)
T ss_pred hhcC-C--CCCCCeeEeec-----CCcchHHHhcccCCCcCcchHHHHHHHHhcCcEEeeeeeeecccCCCCCChhhhcc
Confidence 5542 1 23689999999 999999999999888776654 4556888899999999988521 0
Q ss_pred --e-----eEEEEEeeeeeeeeccccccccccccCchhhH----------HHHHHHHHhccccceEEEEecCCCCCCCCC
Q 011290 255 --T-----RFHSVLMLAWGLVADIDIESEKYRWMGSARID----------FYALQRILYLRQYNGRVSFVPAPGFENHGE 317 (489)
Q Consensus 255 --~-----~~fs~~~~~~G~~adv~~~se~~R~mG~~ry~----------~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~ 317 (489)
. ..|.+ .+++||+|.|..+....|-..+-.|. =.++..+++. +.
T Consensus 509 G~~~~LPL~VfnN-YFSlGfDAHVtLeFHeSReANPekfNSRfrNkmfYaG~afsDfl~r-Ss----------------- 569 (1004)
T KOG0782|consen 509 GMQSALPLTVFNN-YFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGLAFSDFLKR-SS----------------- 569 (1004)
T ss_pred cchhccchhHhhc-cccccccceEEEEeccccccCHHHHHHHHhhhhhhcchhHHHHHhh-hh-----------------
Confidence 0 13544 68999999999887666644443331 1112222211 00
Q ss_pred CCcccccCcCCCCCCCCCcccccccccCCCcccCCCCceEEEeecEEEEEEeeccCCCCCCCcC--C-------CCccCC
Q 011290 318 PSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAA--P-------DAKFSD 388 (489)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~a--P-------~A~~~D 388 (489)
..+|+... +..+|.+..+ .-+ +-++-.+...|.|+|+.+.+.. | -...+|
T Consensus 570 -----------kDL~khi~-----vvCDG~DlTP---kIq--eLK~qCivFlNIprYcaGTmPWG~pgdhhDfePqrhdD 628 (1004)
T KOG0782|consen 570 -----------KDLCKHIT-----VVCDGVDLTP---KIQ--ELKLQCIVFLNIPRYCAGTMPWGEPGDHHDFEPQRHDD 628 (1004)
T ss_pred -----------HHhhhheE-----EEecCccCCh---hhh--hcccceEEEecchhhhcCccCCCCCCccccCCccccCC
Confidence 00111111 1112322111 111 1234456778999998887543 2 123589
Q ss_pred CeEEEEEEecCChHHHHHHHHhhccCCcccCCcEEEEEEeEEEEEeCCCCCCCCCCceEEecCCccccCCceeE
Q 011290 389 GYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQ 462 (489)
Q Consensus 389 G~ldlilv~~~s~~~ll~~l~~~~~G~~~~~~~V~~~kvk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~ 462 (489)
|+++++-+.-.+.. ++.-|.|- -...+++++++... +..+++||||+....|-.++
T Consensus 629 GyvEViGFTmasLA-------ALQvGGhG----ERl~QCreV~l~T~-------KaIPmQVDGEPC~LAps~Ir 684 (1004)
T KOG0782|consen 629 GYVEVIGFTMASLA-------ALQVGGHG----ERLAQCREVRLITN-------KAIPMQVDGEPCLLAPSIIR 684 (1004)
T ss_pred ceEEEEeeeHHHHH-------HHhhcCcc----hhhhhceeEEEEec-------cccceeecCcchhcchhheE
Confidence 99999998854422 33445553 23568889998875 56899999999876555444
No 21
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=99.37 E-value=9.4e-13 Score=120.98 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=95.4
Q ss_pred Eeeeeeeeeccccccc--c--------ccccCchhhHHHHHHHHHhcc--c--cceEEEEecCCCCCCCCCCCcccccCc
Q 011290 261 LMLAWGLVADIDIESE--K--------YRWMGSARIDFYALQRILYLR--Q--YNGRVSFVPAPGFENHGEPSTYSEQNI 326 (489)
Q Consensus 261 ~~~~~G~~adv~~~se--~--------~R~mG~~ry~~~~l~~l~~~r--~--y~~~i~~~p~~~~~~~~~~~~~~~~~~ 326 (489)
+++|+||+|+|..+.+ + .|++|+++|.+.+++.++..+ . ++.+|.+
T Consensus 4 N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~~~~~~~~~~~~~i~~-------------------- 63 (160)
T smart00045 4 NYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFFRTCKDLHERIELEC-------------------- 63 (160)
T ss_pred ccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhhhccccchhhceEEEE--------------------
Confidence 4799999999987543 2 246799999999999886532 1 2333321
Q ss_pred CCCCCCCCCcccccccccCCCcccCCCCceEEEeecEEEEEEeeccCCCCCCCcC----------CCCccCCCeEEEEEE
Q 011290 327 CNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAA----------PDAKFSDGYLDLIII 396 (489)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~a----------P~A~~~DG~ldlilv 396 (489)
+|.. + ..+.....+.++|.+++|+++.++ |+|+++||.||++++
T Consensus 64 ------------------dg~~-------~-~~~~~~~~v~v~N~~~~ggG~~i~p~~~~~~~~~p~a~~~DG~ldv~~~ 117 (160)
T smart00045 64 ------------------DGVD-------V-DLPNSLEGIAVLNIPSYGGGTNLWGTTDKEDLNFSKQSHDDGLLEVVGL 117 (160)
T ss_pred ------------------CCEe-------c-cCCCCccEEEEECCCccccCcccccCCcccccccCCCCCCCceEEEEEE
Confidence 1110 0 011134568899999999999999 899999999999999
Q ss_pred ecCChHHHHHHHHhhccCCcccCCcEEEEEEeEEEEEeCCCCCCCCCCceEEecCCc
Q 011290 397 KDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEV 453 (489)
Q Consensus 397 ~~~s~~~ll~~l~~~~~G~~~~~~~V~~~kvk~~~i~~~~~~~~~~~~~~~~vDGE~ 453 (489)
++.+++.++. |...+.+.+.++++++|+... +++.++++|||.
T Consensus 118 ~~~~~~~~~~---------~~~~~~v~~~~~~~v~i~i~~-----~~~~~~q~DGE~ 160 (160)
T smart00045 118 TGAMHMAQIR---------QVGLAGRRIAQCSEVRITIKT-----SKTIPMQVDGEP 160 (160)
T ss_pred cCchhhhhhh---------hccCCCceeecCceEEEEEec-----CCceeeecCCCC
Confidence 9987765432 455778999999999954321 246789999994
No 22
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.89 E-value=9.6e-09 Score=102.52 Aligned_cols=112 Identities=20% Similarity=0.238 Sum_probs=83.0
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCChhHHHHHH-HHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIV-KVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~~~ha~el~-~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+|+.++.|+ |+..+.+.+ +++...|+..++++.+.. ++..+++.... ..+...++|.||++|||||+.++++ +
T Consensus 1 m~v~iv~~~--~k~~~~~~~-~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL~a~~-~ 76 (277)
T PRK03708 1 MRFGIVARR--DKEEALKLA-YRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTILRIEH-K 76 (277)
T ss_pred CEEEEEecC--CCHHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHHHHHH-h
Confidence 368888888 556667666 689999999999887752 33333332222 1333347899999999999999999 7
Q ss_pred hcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCee
Q 011290 187 LEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 243 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~ 243 (489)
..+ .+|+..||. |+. +|...+ . +.+...++..+.+|...
T Consensus 77 ~~~-------~~pi~gIn~-----G~l-GFl~~~----~-~~~~~~~l~~i~~g~~~ 115 (277)
T PRK03708 77 TKK-------DIPILGINM-----GTL-GFLTEV----E-PEETFFALSRLLEGDYF 115 (277)
T ss_pred cCC-------CCeEEEEeC-----CCC-CccccC----C-HHHHHHHHHHHHcCCce
Confidence 654 789999999 999 777776 3 55788899999999754
No 23
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.71 E-value=6.6e-08 Score=97.92 Aligned_cols=117 Identities=12% Similarity=0.095 Sum_probs=81.6
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~ 187 (489)
+.+++++|+|| |+..+.+.. +++...|+++|+++.+..++...++.+.........+|.||++|||||+.++++.+.
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~-~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l~~~~~~~ 78 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAA-ERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVLAAARHLA 78 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHH-HHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHHHHHHHHHhc
Confidence 46789999999 666666665 578888999999988877655443322222222246899999999999999999996
Q ss_pred cCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCee
Q 011290 188 EREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 243 (489)
Q Consensus 188 ~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~ 243 (489)
.. .+|+..|.++ |+-.-|+..- ....+ .+++..|.+|+..
T Consensus 79 ~~-------~~pv~gin~~----G~lGFL~~~~----~~~~~-~~~l~~i~~g~~~ 118 (305)
T PRK02645 79 PH-------DIPILSVNVG----GHLGFLTHPR----DLLQD-ESVWDRLQEDRYA 118 (305)
T ss_pred cC-------CCCEEEEecC----CcceEecCch----hhcch-HHHHHHHHcCCce
Confidence 54 6899888861 4544444211 11223 6788999999754
No 24
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=98.60 E-value=2.6e-07 Score=84.95 Aligned_cols=134 Identities=14% Similarity=0.193 Sum_probs=88.7
Q ss_pred Eeeeeeeeeccccccccc----------cccCchhhHHHHHHHHHhccccc--eEEEEecCCCCCCCCCCCcccccCcCC
Q 011290 261 LMLAWGLVADIDIESEKY----------RWMGSARIDFYALQRILYLRQYN--GRVSFVPAPGFENHGEPSTYSEQNICN 328 (489)
Q Consensus 261 ~~~~~G~~adv~~~se~~----------R~mG~~ry~~~~l~~l~~~r~y~--~~i~~~p~~~~~~~~~~~~~~~~~~~~ 328 (489)
+.+|+|++|.|..+.++. |+++++.|...+++.++..+... ..|.
T Consensus 4 NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~~~~~~~~~~~i~----------------------- 60 (161)
T PF00609_consen 4 NYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALFQRSCKNLPKKIE----------------------- 60 (161)
T ss_pred ecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHHhchhcCchhhcc-----------------------
Confidence 368999999999876543 45788899888888887322111 0000
Q ss_pred CCCCCCCcccccccccCCCcccCCCCceEEEeecEEEEEEeeccCCCCCCCcCCC------------CccCCCeEEEEEE
Q 011290 329 PIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPD------------AKFSDGYLDLIII 396 (489)
Q Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~aP~------------A~~~DG~ldlilv 396 (489)
+..+|.. ..+......+.+.|.|++++|..+.+. ...+||.|+++.+
T Consensus 61 -------------l~~dg~~--------~~lp~~~~~iv~lNIpSy~gG~~~W~~~~~~~~~~~~~~~~~~Dg~lEVvg~ 119 (161)
T PF00609_consen 61 -------------LEVDGKE--------VDLPSSLESIVFLNIPSYGGGVDLWGNSKPDRSKLKFKKQSMDDGKLEVVGF 119 (161)
T ss_pred -------------cccCCee--------EeeecceeEEEEEccccccCCcccccCCcccccccccccccccCceEEEEEE
Confidence 1111111 123434567889999999999876654 4569999999999
Q ss_pred ecCChHHHHHHHHhhccCCcccCCcEEEEEEeEEEEEeCCCCCCCCCCceEEecCCc
Q 011290 397 KDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEV 453 (489)
Q Consensus 397 ~~~s~~~ll~~l~~~~~G~~~~~~~V~~~kvk~~~i~~~~~~~~~~~~~~~~vDGE~ 453 (489)
++. +.+..... |. ...+...+++.++|+... ...++|+|||+
T Consensus 120 ~~~--~hl~~~~~----g~---~~~~rl~Q~~~i~i~~~~------~~~~~QvDGEp 161 (161)
T PF00609_consen 120 RGS--FHLGQIQA----GL---SSAKRLAQGRPIRIETKE------NKVPFQVDGEP 161 (161)
T ss_pred cCc--hhhhhhhh----cc---CCceEeecCCEEEEEECC------CceeEEeCCCC
Confidence 964 33332222 21 233778899999999873 16899999995
No 25
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=98.24 E-value=6.1e-06 Score=82.85 Aligned_cols=73 Identities=27% Similarity=0.308 Sum_probs=54.8
Q ss_pred CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccce-eccccccCCCC
Q 011290 150 TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMI-KSLLDLVGEPC 228 (489)
Q Consensus 150 ~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a-~sl~~~~g~~~ 228 (489)
+.+.+....++++...+.|.|+.+|||||...|++++ . .++|+-=||+ |+-|... ..+ -|.
T Consensus 84 tTa~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av--~------~~vPvLGipa-----Gvk~~SgvfA~-----~P~ 145 (355)
T COG3199 84 TTAEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV--G------ADVPVLGIPA-----GVKNYSGVFAL-----SPE 145 (355)
T ss_pred ccHHHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc--c------CCCceEeecc-----ccceecccccc-----ChH
Confidence 3456677888999877899999999999999999998 2 2799999999 9999875 333 122
Q ss_pred cHHHHHHHHHcC
Q 011290 229 KASNAILAVIRG 240 (489)
Q Consensus 229 ~~~~A~~~Ii~G 240 (489)
+....+-.+++|
T Consensus 146 ~aa~l~~~~lkg 157 (355)
T COG3199 146 DAARLLGAFLKG 157 (355)
T ss_pred HHHHHHHHHhcc
Confidence 222333466777
No 26
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.14 E-value=1.2e-05 Score=81.22 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=77.3
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh---hHHHHHHHHhh-cCCCceEEEEcCCChHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ---LHAKEIVKVLD-LSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~---~ha~el~~~~~-~~~~d~IV~vGGDGtl~EVvn 184 (489)
++++.||+||.. ..+.+.+ +++...|++.++++.+..++.. .++.......+ ...+|.||++|||||+.++++
T Consensus 4 ~~~v~iv~~~~k--~~a~e~~-~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~ 80 (295)
T PRK01231 4 FRNIGLIGRLGS--SSVVETL-RRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLGAAR 80 (295)
T ss_pred CCEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHHHHHH
Confidence 567999999855 4566656 5788889999998877654331 11111111111 236899999999999999999
Q ss_pred HhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCe
Q 011290 185 GLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 242 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~ 242 (489)
.+... .+|+--|.. |+-.-+ ..+ .+.+..+++..+++|..
T Consensus 81 ~~~~~-------~~Pvlgin~-----G~lGFl-~~~-----~~~~~~~~l~~~~~g~~ 120 (295)
T PRK01231 81 ALARH-------NVPVLGINR-----GRLGFL-TDI-----RPDELEFKLAEVLDGHY 120 (295)
T ss_pred HhcCC-------CCCEEEEeC-----Cccccc-ccC-----CHHHHHHHHHHHHcCCc
Confidence 88643 688877888 874433 322 23467788999999864
No 27
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.97 E-value=3.9e-05 Score=77.25 Aligned_cols=110 Identities=21% Similarity=0.286 Sum_probs=75.9
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHH-------HHHhhcCCCceEEEEcCCChHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEI-------VKVLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el-------~~~~~~~~~d~IV~vGGDGtl~ 180 (489)
..+++.++.||.. ..+.+.. +++...|++.|+++.+.... .+.... ..++ ..+.|.||++|||||+.
T Consensus 4 ~~~~i~iv~~~~~--~~~~~~~-~~i~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~~~~-~~~~d~vi~lGGDGT~L 77 (292)
T PRK03378 4 HFKCIGIVGHPRH--PTALTTH-EMLYHWLTSKGYEVIVEQQI--AHELQLKNVKTGTLAEI-GQQADLAIVVGGDGNML 77 (292)
T ss_pred cCCEEEEEEeCCC--HHHHHHH-HHHHHHHHHCCCEEEEecch--hhhcCcccccccchhhc-CCCCCEEEEECCcHHHH
Confidence 3678999999844 5555544 67888899999876554311 111000 0111 13589999999999999
Q ss_pred HHHHHhhcCcCccccCCCcEEEecCcCCCCcccc-cceeccccccCCCCcHHHHHHHHHcCCe
Q 011290 181 EVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGN-GMIKSLLDLVGEPCKASNAILAVIRGHK 242 (489)
Q Consensus 181 EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN-~~a~sl~~~~g~~~~~~~A~~~Ii~G~~ 242 (489)
.+++.+... .+ .++|. ++|| +|...+ . +.++..++..|++|..
T Consensus 78 ~aa~~~~~~-------~~--Pilgi-----n~G~lGFl~~~----~-~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 78 GAARVLARY-------DI--KVIGI-----NRGNLGFLTDL----D-PDNALQQLSDVLEGHY 121 (292)
T ss_pred HHHHHhcCC-------CC--eEEEE-----ECCCCCccccc----C-HHHHHHHHHHHHcCCc
Confidence 999987653 33 47777 8888 787766 3 4577889999999875
No 28
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.95 E-value=0.0011 Score=65.62 Aligned_cols=96 Identities=18% Similarity=0.103 Sum_probs=62.7
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCc
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~ 190 (489)
++.|+.+|. +.+.+ ++++..|.+.|+.+....... .. ....|.||++|||||+-.+++.+
T Consensus 2 ~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~~~~~~~~---------~~-~~~~d~vi~iGGDGT~L~a~~~~---- 61 (256)
T PRK14075 2 KLGIFYREE-----KEKEA-KFLKEKISKEHEVVEFCEASA---------SG-KVTADLIIVVGGDGTVLKAAKKV---- 61 (256)
T ss_pred EEEEEeCcc-----HHHHH-HHHHHHHHHcCCeeEeecccc---------cc-cCCCCEEEEECCcHHHHHHHHHc----
Confidence 566776665 34444 578888998887654332111 11 23679999999999999888865
Q ss_pred CccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCee
Q 011290 191 DWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 243 (489)
Q Consensus 191 ~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~ 243 (489)
.+|+--|.. |+-.-++. + .+.+..+++..+..|...
T Consensus 62 ------~~Pilgin~-----G~lGfl~~-~-----~~~~~~~~l~~~~~g~~~ 97 (256)
T PRK14075 62 ------GTPLVGFKA-----GRLGFLSS-Y-----TLEEIDRFLEDLKNWNFR 97 (256)
T ss_pred ------CCCEEEEeC-----CCCccccc-c-----CHHHHHHHHHHHHcCCcE
Confidence 356655777 76443432 2 234567788899998754
No 29
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=97.64 E-value=1.2e-05 Score=87.55 Aligned_cols=128 Identities=20% Similarity=0.252 Sum_probs=78.7
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
-.+++||+|-+||...+.+ |.++.+.+|....+ +++.-+ .+.-+-.+-..+ .--.|+||||||++.+|+..+..
T Consensus 194 ~spllv~insksgd~qg~~-~lrkfkq~lnp~qV-fdll~~-gp~~gL~~f~~~---d~friLvcggdGsv~wvls~~ds 267 (1099)
T KOG1170|consen 194 GSPLLVFINSKSGDSQGQR-FLRKFKQILNPIQV-FDLIAG-GPDFGLTFFSHF---ESFRILVCGGDGSVGWVLSAIDR 267 (1099)
T ss_pred CCceeEeecccCCCchhHH-HHHhhhhhcCHHHH-HHHHcc-Ccchhhhhhhcc---cceEEEEecCCCCCcchHHHHHh
Confidence 4579999999999998876 44567666655433 122211 111111111121 12379999999999999887654
Q ss_pred CcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCc--HHHHHHHHHcCCeeeeeEEEE
Q 011290 189 REDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCK--ASNAILAVIRGHKRLLDVATI 250 (489)
Q Consensus 189 ~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~--~~~A~~~Ii~G~~~~lDl~~v 250 (489)
-.-. .+..++++|. ||||++|+.++|+...+.+ ....+...-+.+++-||-.+|
T Consensus 268 ~~lh---~kcql~vlpl-----gtgndlarvlgwg~a~~ddt~~p~il~~~eRastkmldrwsv 323 (1099)
T KOG1170|consen 268 LNLH---SKCQLAVLPL-----GTGNDLARVLGWGHAFYDDTLLPQILRTMERASTKMLDRWSV 323 (1099)
T ss_pred ccch---hhcccccccC-----CChHHHHHHhcccccCchhhccHHHHHHHHhhhhhhhhcchh
Confidence 3211 2788999999 9999999999775222211 112333334456666665554
No 30
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.63 E-value=0.00024 Score=71.92 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=79.1
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHH---HH-----------HHHhhcCCCceEEE
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAK---EI-----------VKVLDLSKYDGIVC 172 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~---el-----------~~~~~~~~~d~IV~ 172 (489)
.+++++.++.||. +..+.++. +++...|...|+++.+.......-.. .. ...+ ..+.|.||+
T Consensus 3 ~~~~~I~iv~~~~--~~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~ 78 (306)
T PRK03372 3 TASRRVLLVAHTG--RDEATEAA-RRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA-ADGCELVLV 78 (306)
T ss_pred CCccEEEEEecCC--CHHHHHHH-HHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc-ccCCCEEEE
Confidence 4678899999984 35555554 67888899999887665432110000 00 0111 235799999
Q ss_pred EcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCee
Q 011290 173 VSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 243 (489)
Q Consensus 173 vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~ 243 (489)
+|||||+-.+++.+..+ .+|+--|.. |+-.-|+.. .+.++.+++..|.+|+..
T Consensus 79 lGGDGT~L~aar~~~~~-------~~PilGIN~-----G~lGFL~~~------~~~~~~~~l~~i~~g~y~ 131 (306)
T PRK03372 79 LGGDGTILRAAELARAA-------DVPVLGVNL-----GHVGFLAEA------EAEDLDEAVERVVDRDYR 131 (306)
T ss_pred EcCCHHHHHHHHHhccC-------CCcEEEEec-----CCCceeccC------CHHHHHHHHHHHHcCCce
Confidence 99999999999987654 678888999 987555542 245678899999999754
No 31
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=97.62 E-value=0.00036 Score=70.36 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=75.5
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChh-HHHH---H-HHHhhcCCCceEEEEcCCChHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKE---I-VKVLDLSKYDGIVCVSGDGILVEVV 183 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~-ha~e---l-~~~~~~~~~d~IV~vGGDGtl~EVv 183 (489)
++++.++.|+.. ..+.+.. +.+...|+..++++.+...+... ++.+ . .+.+ ...+|.||++|||||+.+++
T Consensus 5 ~~~v~iv~~~~~--~~~~e~~-~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDGt~l~~~ 80 (291)
T PRK02155 5 FKTVALIGRYQT--PGIAEPL-ESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEI-GARADLAVVLGGDGTMLGIG 80 (291)
T ss_pred CCEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccChhHh-ccCCCEEEEECCcHHHHHHH
Confidence 567999988844 5566555 57888888888876654332210 1100 0 1222 13689999999999999999
Q ss_pred HHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCee
Q 011290 184 NGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 243 (489)
Q Consensus 184 nGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~ 243 (489)
+.+... .+|+-=|.. |+-.-|+. . .+.+..+++..+.+|+..
T Consensus 81 ~~~~~~-------~~pilGIn~-----G~lGFL~~-~-----~~~~~~~~l~~~~~g~~~ 122 (291)
T PRK02155 81 RQLAPY-------GVPLIGINH-----GRLGFITD-I-----PLDDMQETLPPMLAGNYE 122 (291)
T ss_pred HHhcCC-------CCCEEEEcC-----CCcccccc-C-----CHHHHHHHHHHHHcCCce
Confidence 998754 577776888 87554442 2 234677888999999753
No 32
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.58 E-value=6.1e-05 Score=75.75 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=75.5
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhC-CCcEEEEEeCChh----------------------HHHHHHHHhhcCCC
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQL----------------------HAKEIVKVLDLSKY 167 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a-~i~~~v~~T~~~~----------------------ha~el~~~~~~~~~ 167 (489)
++.||.||. +..+.+.. +++...|.+. ++.+.+...-... +......+....++
T Consensus 1 kVgii~np~--~~~~~~~~-~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
T PF01513_consen 1 KVGIIANPN--KPEAIELA-NELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGV 77 (285)
T ss_dssp -EEEEESSC--GHCCCHHH-HHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCS
T ss_pred CEEEEEcCC--CHHHHHHH-HHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCC
Confidence 578999998 44555555 5788888887 4433332110000 00011233344789
Q ss_pred ceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCeeeee
Q 011290 168 DGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLD 246 (489)
Q Consensus 168 d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~lD 246 (489)
|.||++|||||+-.+++.+... .+||--|+. |+-+-++. + .+.+...++..+.+|+...-.
T Consensus 78 D~ii~lGGDGT~L~~~~~~~~~-------~~Pilgin~-----G~lgfl~~-~-----~~~~~~~~l~~~~~g~~~~~~ 138 (285)
T PF01513_consen 78 DLIIVLGGDGTFLRAARLFGDY-------DIPILGINT-----GTLGFLTE-F-----EPEDIEEALEKILAGEYSIEE 138 (285)
T ss_dssp SEEEEEESHHHHHHHHHHCTTS-------T-EEEEEES-----SSSTSSSS-E-----EGCGHHHHHHHHHHTHCEEEE
T ss_pred CEEEEECCCHHHHHHHHHhccC-------CCcEEeecC-----CCcccccc-C-----CHHHHHHHHHHHhcCCeEEEE
Confidence 9999999999999999988764 789999999 99655543 2 234788888999998755443
No 33
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.35 E-value=0.0014 Score=66.25 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=74.7
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh----------hHHHHHHHHhhcCCCceEEEEcCCC
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~----------~ha~el~~~~~~~~~d~IV~vGGDG 177 (489)
.++++.+|.||.. ..+.+.. +++...|.+.|+++.+...... ++...-...+. ...|.||++||||
T Consensus 4 ~~~~i~ii~~~~~--~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~lGGDG 79 (296)
T PRK04539 4 PFHNIGIVTRPNT--PDIQDTA-HTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELG-QYCDLVAVLGGDG 79 (296)
T ss_pred CCCEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcC-cCCCEEEEECCcH
Confidence 3678999999854 5566555 6788889999998766432111 11000001221 2589999999999
Q ss_pred hHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCe
Q 011290 178 ILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 242 (489)
Q Consensus 178 tl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~ 242 (489)
|+-.++..+... .+||-=|-. |+-.-|+. + .+.+..+++..|++|+.
T Consensus 80 T~L~aa~~~~~~-------~~PilGIN~-----G~lGFL~~-~-----~~~~~~~~l~~i~~g~~ 126 (296)
T PRK04539 80 TFLSVAREIAPR-------AVPIIGINQ-----GHLGFLTQ-I-----PREYMTDKLLPVLEGKY 126 (296)
T ss_pred HHHHHHHHhccc-------CCCEEEEec-----CCCeEeec-c-----CHHHHHHHHHHHHcCCc
Confidence 999999877654 678766778 87444432 1 23467788889999874
No 34
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=97.32 E-value=0.00045 Score=75.56 Aligned_cols=151 Identities=16% Similarity=0.167 Sum_probs=91.5
Q ss_pred eeEEEEEeeeeeeeeccccccccccc----------cCchhhHHHHHHHHHhccccce---EEEEecCCCCCCCCCCCcc
Q 011290 255 TRFHSVLMLAWGLVADIDIESEKYRW----------MGSARIDFYALQRILYLRQYNG---RVSFVPAPGFENHGEPSTY 321 (489)
Q Consensus 255 ~~~fs~~~~~~G~~adv~~~se~~R~----------mG~~ry~~~~l~~l~~~r~y~~---~i~~~p~~~~~~~~~~~~~ 321 (489)
++..+++.+|+|++|.|..+.+.+|- -..+-|-+-|-+.|+ +|+|+- +|.
T Consensus 611 EkCVMNNYFGIGlDAKISLDFhnKReEhPeKcrSR~kn~MWYGvLGtKeLL-hrTyrnLEQRV~---------------- 673 (1099)
T KOG1170|consen 611 EKCVMNNYFGIGLDAKISLDFHNKREEHPEKCRSRSKNFMWYGVLGTKELL-HRTYRNLEQRVK---------------- 673 (1099)
T ss_pred hhhhhccccccccceeEeeecccccccChHHHhHHhhhcchhhhcchHHHH-HHHHHhHHHHee----------------
Confidence 45667788999999999876544441 122223333456666 355531 211
Q ss_pred cccCcCCCCCCCCCcccccccccCCCcccCCCCceEEEeecEEEEEEeeccCCCCCCCcCC---------CCccCCCeEE
Q 011290 322 SEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAP---------DAKFSDGYLD 392 (489)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~aP---------~A~~~DG~ld 392 (489)
+..+|.+++++. +. .+.|-|.|.|.+|.+|.- .-.++|+.|+
T Consensus 674 --------------------LECDG~~i~lP~-----LQ----GIviLNIpSyaGGtNFWGsnk~dd~f~apSfDDriLE 724 (1099)
T KOG1170|consen 674 --------------------LECDGVPIDLPS-----LQ----GIVILNIPSYAGGTNFWGSNKDDDEFTAPSFDDRILE 724 (1099)
T ss_pred --------------------eecCCcccCCcc-----cc----eeEEEecccccCcccccCCCCCCCcccCCCcccceeE
Confidence 223444443321 22 467889998888876532 3457999999
Q ss_pred EEEEecCChHHHHHHHHhhccCCcccCCcEEEEEEeEEEEEeCCCCCCCCCCceEEecCCccccCCceeEecC
Q 011290 393 LIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQ 465 (489)
Q Consensus 393 lilv~~~s~~~ll~~l~~~~~G~~~~~~~V~~~kvk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~ 465 (489)
+|.|=..=-...-+ ++ +..+=...+++.++|.... +++.++|+|||..-..|+.+++.+
T Consensus 725 VVAvFGsvqMA~SR----vI-----~LqhHRIAQCr~V~I~IlG-----DE~IPVQvDGEaWlQPPG~irIvH 783 (1099)
T KOG1170|consen 725 VVAVFGSVQMATSR----VI-----RLQHHRIAQCRHVRIVILG-----DEGIPVQVDGEAWLQPPGIIRIVH 783 (1099)
T ss_pred EeeeehhHHHHHHH----HH-----HhhhhhhhhceEEEEEEec-----CCCCceeecCccccCCCceeeeeh
Confidence 99876421111111 11 1112234567888888763 578999999999998898888644
No 35
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.29 E-value=0.0015 Score=65.59 Aligned_cols=113 Identities=14% Similarity=0.146 Sum_probs=74.1
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChh--HHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL--HAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~--ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
..++++.++.||. + .+.+.. +++...|+..++++.+....... ....-..++ ..+.|.||++|||||+-.+++
T Consensus 8 ~~~~~i~ii~~~~--~-~~~~~~-~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dlvi~iGGDGT~L~aa~ 82 (287)
T PRK14077 8 KNIKKIGLVTRPN--V-SLDKEI-LKLQKILSIYKVEILLEKESAEILDLPGYGLDEL-FKISDFLISLGGDGTLISLCR 82 (287)
T ss_pred ccCCEEEEEeCCc--H-HHHHHH-HHHHHHHHHCCCEEEEecchhhhhcccccchhhc-ccCCCEEEEECCCHHHHHHHH
Confidence 3478899999996 4 666655 68888899999877664321100 000000111 135899999999999999988
Q ss_pred HhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCe
Q 011290 185 GLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 242 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~ 242 (489)
-+... .+|+--|-. |+=.-|+. + .+.+...++..|++|+.
T Consensus 83 ~~~~~-------~~PilGIN~-----G~lGFLt~-~-----~~~~~~~~l~~i~~g~y 122 (287)
T PRK14077 83 KAAEY-------DKFVLGIHA-----GHLGFLTD-I-----TVDEAEKFFQAFFQGEF 122 (287)
T ss_pred HhcCC-------CCcEEEEeC-----CCcccCCc-C-----CHHHHHHHHHHHHcCCC
Confidence 77654 577666777 76444432 1 23466788899999874
No 36
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.26 E-value=0.0018 Score=65.61 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=73.7
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh--hHHH--------H----HHHHhhcCCCceEEEEc
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ--LHAK--------E----IVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~--~ha~--------e----l~~~~~~~~~d~IV~vG 174 (489)
++++.++.|| ++..+.++. +++...|.+.|+++.+...... ++.. + -...+. .+.|.+|++|
T Consensus 1 m~~igiv~n~--~~~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iG 76 (305)
T PRK02649 1 MPKAGIIYND--GKPLAVRTA-EELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFD-SSMKFAIVLG 76 (305)
T ss_pred CCEEEEEEcC--CCHHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcc-cCcCEEEEEe
Confidence 4679999998 444566555 6788889999998765432110 0000 0 001111 2579999999
Q ss_pred CCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCe
Q 011290 175 GDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 242 (489)
Q Consensus 175 GDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~ 242 (489)
||||+-.+++-+... .+|+--|-. |+=.-|+. + .+.+..+++..+++|+.
T Consensus 77 GDGTlL~aar~~~~~-------~iPilGIN~-----G~lGFLt~-~-----~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 77 GDGTVLSAARQLAPC-------GIPLLTINT-----GHLGFLTE-A-----YLNQLDEAIDQVLAGQY 126 (305)
T ss_pred CcHHHHHHHHHhcCC-------CCcEEEEeC-----CCCccccc-C-----CHHHHHHHHHHHHcCCc
Confidence 999999999977654 677766778 86444443 1 23467788999999974
No 37
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.21 E-value=0.0028 Score=69.85 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=77.6
Q ss_pred cCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHH-HHH----HhhcCCCceEEEEcCCChHH
Q 011290 106 FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE-IVK----VLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 106 ~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~e-l~~----~~~~~~~d~IV~vGGDGtl~ 180 (489)
..+|+++.|+.||. +..+.+.. +++...|...++++.+...... ...+ +.. ..+..+.|.||++|||||+-
T Consensus 287 ~~~~~~i~iv~~~~--~~~~~~~~-~~i~~~l~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L 362 (569)
T PRK14076 287 RIKPTKFGIVSRID--NEEAINLA-LKIIKYLDSKGIPYELESFLYN-KLKNRLNEECNLIDDIEEISHIISIGGDGTVL 362 (569)
T ss_pred ccCCcEEEEEcCCC--CHHHHHHH-HHHHHHHHHCCCEEEEechhhh-hhcccccccccccccccCCCEEEEECCcHHHH
Confidence 36899999999984 45556554 5788888888887655432110 0000 000 01123579999999999999
Q ss_pred HHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCee
Q 011290 181 EVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 243 (489)
Q Consensus 181 EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~ 243 (489)
.+++-+... .+||-=|-. |+-.-|+. + .+.+..+++..+++|...
T Consensus 363 ~aa~~~~~~-------~~PilGin~-----G~lGFL~~-~-----~~~~~~~~l~~~~~g~~~ 407 (569)
T PRK14076 363 RASKLVNGE-------EIPIICINM-----GTVGFLTE-F-----SKEEIFKAIDSIISGEYE 407 (569)
T ss_pred HHHHHhcCC-------CCCEEEEcC-----CCCCcCcc-c-----CHHHHHHHHHHHHcCCce
Confidence 999876543 678777888 88555553 2 234677889999999743
No 38
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.07 E-value=0.0036 Score=63.14 Aligned_cols=111 Identities=15% Similarity=0.264 Sum_probs=71.6
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChh-HH-------H-HH--HHHhhcCCCceEEEEcCCChH
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HA-------K-EI--VKVLDLSKYDGIVCVSGDGIL 179 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~-ha-------~-el--~~~~~~~~~d~IV~vGGDGtl 179 (489)
++.++.||. +..+.++. +++...|++.|+++.+....... .. . .. ...+. ...|.||++|||||+
T Consensus 2 ~igii~~~~--~~~~~~~~-~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~lGGDGT~ 77 (292)
T PRK01911 2 KIAIFGQTY--QESASPYI-QELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELD-GSADMVISIGGDGTF 77 (292)
T ss_pred EEEEEeCCC--CHHHHHHH-HHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcc-cCCCEEEEECCcHHH
Confidence 588888983 45555544 67888899999877664321100 00 0 00 01221 358999999999999
Q ss_pred HHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCee
Q 011290 180 VEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 243 (489)
Q Consensus 180 ~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~ 243 (489)
-.+++-+... .+|+--|-. |+-.-|+. + .+.+...++..+++|...
T Consensus 78 L~aa~~~~~~-------~~PilGIN~-----G~lGFLt~-~-----~~~~~~~~l~~i~~g~~~ 123 (292)
T PRK01911 78 LRTATYVGNS-------NIPILGINT-----GRLGFLAT-V-----SKEEIEETIDELLNGDYT 123 (292)
T ss_pred HHHHHHhcCC-------CCCEEEEec-----CCCCcccc-c-----CHHHHHHHHHHHHcCCce
Confidence 9999877654 678766778 77433322 2 234677888999999753
No 39
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=96.98 E-value=0.0051 Score=65.72 Aligned_cols=117 Identities=15% Similarity=0.216 Sum_probs=74.0
Q ss_pred hcCCCcEEEEEEcCCCCCccccccchHhHHHHHH-hCCCcEEEEEeCChhH-H----HHHH------HH---hhcCCCce
Q 011290 105 SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLE-DANIQFTVQETTQQLH-A----KEIV------KV---LDLSKYDG 169 (489)
Q Consensus 105 ~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~-~a~i~~~v~~T~~~~h-a----~el~------~~---~~~~~~d~ 169 (489)
+...|++++||.||.. ..+.++. +++...|. ..|+++.+.......- . .... .. +. .++|.
T Consensus 190 w~~~p~~VgIV~n~~k--~~a~el~-~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~Dl 265 (508)
T PLN02935 190 WESDPQTVLIITKPNS--TSVRVLC-AEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLH-TKVDL 265 (508)
T ss_pred ecCCCCEEEEEecCCC--HHHHHHH-HHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcc-cCCCE
Confidence 4456999999999954 4555544 57777777 4777665532111000 0 0000 11 11 36899
Q ss_pred EEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCee
Q 011290 170 IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 243 (489)
Q Consensus 170 IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~ 243 (489)
||++|||||+-.++.-+... .+||--|.. |+=--|+ .+ .+.+...++..|++|...
T Consensus 266 VIsiGGDGTlL~Aar~~~~~-------~iPILGIN~-----G~LGFLt-~i-----~~~e~~~~Le~il~G~y~ 321 (508)
T PLN02935 266 VITLGGDGTVLWAASMFKGP-------VPPVVPFSM-----GSLGFMT-PF-----HSEQYRDCLDAILKGPIS 321 (508)
T ss_pred EEEECCcHHHHHHHHHhccC-------CCcEEEEeC-----CCcceec-cc-----CHHHHHHHHHHHHcCCce
Confidence 99999999999999876553 577766788 8633332 22 244677889999998743
No 40
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.95 E-value=0.0058 Score=60.72 Aligned_cols=96 Identities=16% Similarity=0.156 Sum_probs=64.1
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcC
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
+++.++.|+.. ++.++. ++++..|++.|+++.+. ..+.|.||++|||||+-.+++.+...
T Consensus 3 ~~i~iv~~~~~---~a~~~~-~~l~~~l~~~g~~~~~~----------------~~~~D~vi~lGGDGT~L~a~~~~~~~ 62 (264)
T PRK03501 3 RNLFFFYKRDK---ELVEKV-KPLKKIAEEYGFTVVDH----------------PKNANIIVSIGGDGTFLQAVRKTGFR 62 (264)
T ss_pred cEEEEEECCCH---HHHHHH-HHHHHHHHHCCCEEEcC----------------CCCccEEEEECCcHHHHHHHHHhccc
Confidence 36788888765 556555 68899999999865421 13579999999999999998876543
Q ss_pred cCccccCCCc-EEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCe
Q 011290 190 EDWNDAIKVP-LGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 242 (489)
Q Consensus 190 ~~~~~~~~~p-lgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~ 242 (489)
. .+| +||=-. |+-.-| ..+ .+.+..+++..+.+|+.
T Consensus 63 ~------~~pilgIn~~-----G~lGFL-~~~-----~~~~~~~~l~~i~~g~~ 99 (264)
T PRK03501 63 E------DCLYAGISTK-----DQLGFY-CDF-----HIDDLDKMIQAITKEEI 99 (264)
T ss_pred C------CCeEEeEecC-----CCCeEc-ccC-----CHHHHHHHHHHHHcCCc
Confidence 1 456 343332 432222 222 23467788889999874
No 41
>PLN02727 NAD kinase
Probab=96.88 E-value=0.0048 Score=69.73 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=73.4
Q ss_pred hcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhC-CCcEEEEEeCChhHHH-HH-------------HHHhhcCCCce
Q 011290 105 SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQLHAK-EI-------------VKVLDLSKYDG 169 (489)
Q Consensus 105 ~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a-~i~~~v~~T~~~~ha~-el-------------~~~~~~~~~d~ 169 (489)
+..+|++++||.+|.. .+.+.. +++...|... |+++-+- +...+.. .+ ...+. .+.|.
T Consensus 674 W~~p~rtVgIV~K~~~---ea~~~~-~eL~~~L~~~~gi~V~VE--~~~a~~l~~~~~~~~~~~~~~~~~~el~-~~~DL 746 (986)
T PLN02727 674 WKSTPKTVLLLKKLGQ---ELMEEA-KEVASFLYHQEKMNVLVE--PDVHDIFARIPGFGFVQTFYSQDTSDLH-ERVDF 746 (986)
T ss_pred cCCCCCEEEEEcCCcH---HHHHHH-HHHHHHHHhCCCeEEEEe--cchHHHhhccccccccceecccchhhcc-cCCCE
Confidence 4467999999999975 455444 5678888876 7655333 2221111 00 01111 35899
Q ss_pred EEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCe
Q 011290 170 IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 242 (489)
Q Consensus 170 IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~ 242 (489)
||++|||||+-.+++-+... .+||--|-. |+---|+- + .+.+..+++..|+.|+.
T Consensus 747 VIvLGGDGTlLrAar~~~~~-------~iPILGINl-----GrLGFLTd-i-----~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 747 VACLGGDGVILHASNLFRGA-------VPPVVSFNL-----GSLGFLTS-H-----YFEDFRQDLRQVIHGNN 801 (986)
T ss_pred EEEECCcHHHHHHHHHhcCC-------CCCEEEEeC-----CCcccccc-C-----CHHHHHHHHHHHHcCCc
Confidence 99999999999999977553 678777888 86443332 1 23456678889998874
No 42
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.85 E-value=0.0063 Score=60.51 Aligned_cols=95 Identities=18% Similarity=0.239 Sum_probs=67.5
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCc
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~ 190 (489)
++.++.|+ +.++.++. ++++..|+..|+++. ..+.|.||++|||||+-..++.+....
T Consensus 2 ~i~Ii~~~---~~~~~~~~-~~l~~~l~~~g~~~~------------------~~~~Dlvi~iGGDGT~L~a~~~~~~~~ 59 (265)
T PRK04885 2 KVAIISNG---DPKSKRVA-SKLKKYLKDFGFILD------------------EKNPDIVISVGGDGTLLSAFHRYENQL 59 (265)
T ss_pred EEEEEeCC---CHHHHHHH-HHHHHHHHHcCCccC------------------CcCCCEEEEECCcHHHHHHHHHhcccC
Confidence 47778773 44566654 688888988888631 136799999999999999998776531
Q ss_pred CccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCee
Q 011290 191 DWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 243 (489)
Q Consensus 191 ~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~ 243 (489)
..+|+-=|.. |+-.-++ .+ .+.+..+++..|.+|+..
T Consensus 60 -----~~iPilGIN~-----G~lGFL~-~~-----~~~~~~~~l~~i~~g~y~ 96 (265)
T PRK04885 60 -----DKVRFVGVHT-----GHLGFYT-DW-----RPFEVDKLVIALAKDPGQ 96 (265)
T ss_pred -----CCCeEEEEeC-----CCceecc-cC-----CHHHHHHHHHHHHcCCce
Confidence 1678766888 8744444 32 234677889999999743
No 43
>PLN02929 NADH kinase
Probab=96.22 E-value=0.023 Score=57.37 Aligned_cols=96 Identities=18% Similarity=0.268 Sum_probs=60.2
Q ss_pred hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCC
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLD 209 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~ 209 (489)
.+.++..|+++|+++..+. +. ++ +. .....|.||++|||||+-.+++-+ .. .+||-=|-.
T Consensus 36 ~~~~~~~L~~~gi~~~~v~--r~----~~-~~-~~~~~Dlvi~lGGDGT~L~aa~~~-~~-------~iPvlGIN~---- 95 (301)
T PLN02929 36 VNFCKDILQQKSVDWECVL--RN----EL-SQ-PIRDVDLVVAVGGDGTLLQASHFL-DD-------SIPVLGVNS---- 95 (301)
T ss_pred HHHHHHHHHHcCCEEEEee--cc----cc-cc-ccCCCCEEEEECCcHHHHHHHHHc-CC-------CCcEEEEEC----
Confidence 3678999999999875543 21 11 12 235689999999999999998877 43 567555666
Q ss_pred Cccc---------ccce--eccccccC-CCCcHHHHHHHHHcCCeeeee
Q 011290 210 AGTG---------NGMI--KSLLDLVG-EPCKASNAILAVIRGHKRLLD 246 (489)
Q Consensus 210 ~GSg---------N~~a--~sl~~~~g-~~~~~~~A~~~Ii~G~~~~lD 246 (489)
|.. |.|- ++++.-+. .+.+..+++..+++|....-.
T Consensus 96 -Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~~~~~~ 143 (301)
T PLN02929 96 -DPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGRLKPTE 143 (301)
T ss_pred -CCcccccccccccccccccCccccccCCHHHHHHHHHHHHcCCceEEE
Confidence 631 1111 12211111 234677888999999755433
No 44
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=96.05 E-value=0.028 Score=58.44 Aligned_cols=66 Identities=27% Similarity=0.592 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHh----hhhcCCCcEEEEEEcCCCCCc--cccccchHhHHHHHHhCCCcEEEEEeCChhHHH
Q 011290 91 SKRLWCEKLRDF----IDSFGRPKRLYIFVNPFGGKK--IASKIFLDDVKPLLEDANIQFTVQETTQQLHAK 156 (489)
Q Consensus 91 ~~~~w~~~l~~~----~~~~~rpkr~lviiNP~sG~~--~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~ 156 (489)
..+.|++...-+ +.....|+++.|++.|--|.+ .|.+.|.+.|+|+|.+|+++|+++...++|+.+
T Consensus 45 i~~k~~~~V~~la~epl~~~~~PRKlTVy~a~pPgD~l~~a~~~Fr~YVKPIL~AaglDyevv~g~rqGdIr 116 (382)
T PF11711_consen 45 IRQKWCDKVKHLAEEPLPPDELPRKLTVYIAPPPGDGLDVARKYFREYVKPILVAAGLDYEVVEGRRQGDIR 116 (382)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHHHHHHHHhhccceEEeccccccHHH
Confidence 567788876444 445578999999999998876 688899999999999999999999999999866
No 45
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.04 E-value=0.084 Score=52.31 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=58.9
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCc
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~ 190 (489)
|+.+|-||.. ++.+ +.++++..++..++ ..+.+|.||++|||||+-.+++-+...
T Consensus 2 ~~~i~~~~~~---~s~~-~~~~l~~~~~~~~~--------------------~~~~~D~vi~iGGDGT~L~a~~~~~~~- 56 (259)
T PRK00561 2 KYKIFASTTP---QTEP-VLPKLKKVLKKKLA--------------------VEDGADYLFVLGGDGFFVSTAANYNCA- 56 (259)
T ss_pred EEEEEeCCCH---HHHH-HHHHHHHHHhhCCC--------------------ccCCCCEEEEECCcHHHHHHHHHhcCC-
Confidence 5788888765 3333 23455555554322 124689999999999999988876543
Q ss_pred CccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHH-HHHHHHcCCeeeeeEEEEE
Q 011290 191 DWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASN-AILAVIRGHKRLLDVATIL 251 (489)
Q Consensus 191 ~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~-A~~~Ii~G~~~~lDl~~v~ 251 (489)
.+|+--|.. |+-.-|+. + .+.+... .+..+.+.......+..+.
T Consensus 57 ------~iPilGIN~-----G~lGFL~~-~-----~~~~~~~~~~~~l~~~~~~~r~~L~~~ 101 (259)
T PRK00561 57 ------GCKVVGINT-----GHLGFYTS-F-----NETDLDQNFANKLDQLKFTQIDLLEVQ 101 (259)
T ss_pred ------CCcEEEEec-----CCCccccc-c-----CHHHHHHHHHHHHhhCCeEEEEEEEEE
Confidence 688877888 86433332 1 1234555 4444444444444444443
No 46
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=95.71 E-value=0.038 Score=54.48 Aligned_cols=104 Identities=19% Similarity=0.326 Sum_probs=66.6
Q ss_pred HHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE----eCChhHHHHHHHHhhcCCCceEEEEc
Q 011290 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE----TTQQLHAKEIVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 99 l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~----T~~~~ha~el~~~~~~~~~d~IV~vG 174 (489)
+.+.+... +.++++|+..+.. .+...++++..|+.+|+++.++. .-...++.++...+...++|.||.+|
T Consensus 10 l~~~l~~~-~~~~~lvv~d~~t-----~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vG 83 (250)
T PF13685_consen 10 LPEILSEL-GLKKVLVVTDENT-----YKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVG 83 (250)
T ss_dssp HHHHHGGG-T-SEEEEEEETTH-----HHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEE
T ss_pred HHHHHHhc-CCCcEEEEEcCCH-----HHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeC
Confidence 34445444 4479999988764 33455789999999999987553 23334455566666446889999999
Q ss_pred CCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceec
Q 011290 175 GDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKS 219 (489)
Q Consensus 175 GDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~s 219 (489)
| ||++++..-...+ .++|+-.+|.. =|.|+++-.
T Consensus 84 g-G~i~D~~K~~A~~------~~~p~isVPTa----~S~DG~aS~ 117 (250)
T PF13685_consen 84 G-GTIIDIAKYAAFE------LGIPFISVPTA----ASHDGFASP 117 (250)
T ss_dssp S-HHHHHHHHHHHHH------HT--EEEEES------SSGGGTSS
T ss_pred C-cHHHHHHHHHHHh------cCCCEEEeccc----cccccccCC
Confidence 8 9999999877665 37999999982 566777654
No 47
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.70 E-value=0.048 Score=54.44 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=62.4
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHH-HHhhcCCCceEEEEcCCChHHHHHHHhhcC
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIV-KVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~-~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
++.+++||.. ..+.++. +++...| ..++++.+.. ......... ......+.|.||++|||||+-.+++.+
T Consensus 2 ~i~iv~~~~~--~~~~~~~-~~i~~~l-~~g~~~~~~~--~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~a~~~~--- 72 (271)
T PRK01185 2 KVAFVIRKDC--KRCIKIA-KSIIELL-PPDWEIIYEM--EAAKALGMDGLDIEEINADVIITIGGDGTILRTLQRA--- 72 (271)
T ss_pred EEEEEecCCC--HHHHHHH-HHHHHHH-hcCCEEEEec--hhhhhcCcccCcccccCCCEEEEEcCcHHHHHHHHHc---
Confidence 5888999743 4555544 5677767 4576554432 111110000 011112679999999999998777643
Q ss_pred cCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCe
Q 011290 190 EDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 242 (489)
Q Consensus 190 ~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~ 242 (489)
..|+--|-. |+=.-++ .+ .+.+...++..+.+|+.
T Consensus 73 -------~~PilGIN~-----G~lGFL~-~~-----~~~~~~~~l~~i~~g~~ 107 (271)
T PRK01185 73 -------KGPILGINM-----GGLGFLT-EI-----EIDEVGSAIKKLIRGEY 107 (271)
T ss_pred -------CCCEEEEEC-----CCCccCc-cc-----CHHHHHHHHHHHHcCCc
Confidence 136555677 7754444 22 23467788899999874
No 48
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=95.33 E-value=0.19 Score=51.67 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=63.4
Q ss_pred hhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC-----ChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011290 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-----QQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 103 ~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~-----~~~ha~el~~~~~~~~~d~IV~vGGDG 177 (489)
+...+..++++|+..+..-+ .+.+++...|+.+++++.++..+ ......++++.+.. +.|.||++|| |
T Consensus 18 ~~~~~~~~kvlivtd~~~~~-----~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGG-G 90 (332)
T cd08549 18 INKIGVNSKIMIVCGNNTYK-----VAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGS-G 90 (332)
T ss_pred HHHcCCCCcEEEEECCcHHH-----HHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECC-c
Confidence 33333346899998876632 23468999999999877765322 23445566666655 8999999998 8
Q ss_pred hHHHHHHHhhcCcCccccCCCcEEEecCc
Q 011290 178 ILVEVVNGLLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 178 tl~EVvnGL~~~~~~~~~~~~plgiIP~~ 206 (489)
++.++.-.+.-. ..+|+-.||.+
T Consensus 91 sv~D~aK~iA~~------~gip~I~VPTT 113 (332)
T cd08549 91 TIIDLVKFVSFK------VGKPFISVPTA 113 (332)
T ss_pred HHHHHHHHHHHH------cCCCEEEeCCC
Confidence 888887766532 26899999984
No 49
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=94.85 E-value=0.27 Score=51.02 Aligned_cols=102 Identities=23% Similarity=0.344 Sum_probs=65.1
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--e--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T--~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+.+-+..+ .+ +++...|+.+|+++.++. . -......++++.+...+.|.||.+|| |.+.++...
T Consensus 26 ~r~lvVt~~~~~~~~g--~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~aK~ 101 (357)
T cd08181 26 KRALIVTGKSSAKKNG--SL-DDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGG-GSPLDAAKA 101 (357)
T ss_pred CEEEEEeCCchHhhcC--cH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 7899998876643221 23 579999999999887652 1 12233455666665578999999998 667766654
Q ss_pred hh---cCcC--------ccccCCCcEEEecCcCCCCccccccee
Q 011290 186 LL---ERED--------WNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 186 L~---~~~~--------~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
+. ..+. ......+|+..||. ++|||.-+..
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPT---tagTGsE~t~ 142 (357)
T cd08181 102 IAVLIKNPDLKVELYFRSKYLKALPVVAIPT---TAGTGSEVTQ 142 (357)
T ss_pred HHHHHhCCCcHHHHhcccccCCCCCEEEEeC---CCcchhhhCC
Confidence 32 1110 00113589999998 5677655554
No 50
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=94.85 E-value=0.21 Score=51.65 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=64.4
Q ss_pred HhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE-e-C-ChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011290 101 DFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-T-T-QQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 101 ~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~-T-~-~~~ha~el~~~~~~~~~d~IV~vGGDG 177 (489)
+.+...+ +|.+|+..+.+-+ . +.+++...|+.+++.+.+.. . + ......++++.+...++|.||.+|| |
T Consensus 16 ~~~~~~g--~~~liv~~~~~~~----~-~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-G 87 (349)
T cd08550 16 AILSTFG--SKVAVVGGKTVLK----K-SRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGG-G 87 (349)
T ss_pred HHHHHcC--CeEEEEEChHHHH----H-HHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecC-c
Confidence 3344433 6788888776643 2 33689999999887654332 1 2 2234555566665568999999998 8
Q ss_pred hHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccc
Q 011290 178 ILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGN 214 (489)
Q Consensus 178 tl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN 214 (489)
.+.++...+... ..+|+..||. ++|||-
T Consensus 88 s~~D~aK~ia~~------~~~p~i~VPT---tagtgs 115 (349)
T cd08550 88 KTLDTAKAVADR------LDKPIVIVPT---IASTCA 115 (349)
T ss_pred HHHHHHHHHHHH------cCCCEEEeCC---ccccCc
Confidence 888888777543 2689999998 345553
No 51
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=94.79 E-value=0.31 Score=50.92 Aligned_cols=100 Identities=22% Similarity=0.317 Sum_probs=63.1
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~--~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+..-+ ...+ +++...|+.+++++.++. ..+ .....+.++.+...+.|.||.+|| |.+.++...
T Consensus 24 ~r~livt~~~~~~---~g~~-~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVK---LGLV-DKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhh---cchH-HHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6899998765532 1234 689999999999887652 112 233455666665568999999998 666665554
Q ss_pred hh---cCcC---------ccccCCCcEEEecCcCCCCcccccce
Q 011290 186 LL---ERED---------WNDAIKVPLGVVPADFLDAGTGNGMI 217 (489)
Q Consensus 186 L~---~~~~---------~~~~~~~plgiIP~~~~~~GSgN~~a 217 (489)
+. ..+. ......+|+..||. ++|||--+.
T Consensus 99 ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT---tagtGsE~t 139 (375)
T cd08194 99 IAVLATNGGSIRDYKGPRIVDKPGLPLIAIPT---TAGTGSEVT 139 (375)
T ss_pred HHHHHhCCCCHHHHhCcccccCCCCCEEEECC---CCccccccC
Confidence 32 2110 00123589999998 456655443
No 52
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=94.73 E-value=0.37 Score=50.62 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=65.9
Q ss_pred HhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC----ChhHHHHHHHHhhcCCCceEEEEcCC
Q 011290 101 DFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGD 176 (489)
Q Consensus 101 ~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~----~~~ha~el~~~~~~~~~d~IV~vGGD 176 (489)
+.+...+ +|++|+..+...+ ...+ +++...|+.+++++.++.-. ......+.++.+...+.|.||.+||
T Consensus 16 ~~~~~~g--~~~livt~~~~~~---~~~~-~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG- 88 (386)
T cd08191 16 RLAARLG--SRALIVTDERMAG---TPVF-AELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG- 88 (386)
T ss_pred HHHHHcC--CeEEEEECcchhh---cchH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-
Confidence 3444444 7899998765543 2234 67999999999988776311 1222334445454568999999998
Q ss_pred ChHHHHHHHh---hcCcC---------ccccCCCcEEEecCcCCCCccccccee
Q 011290 177 GILVEVVNGL---LERED---------WNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 177 Gtl~EVvnGL---~~~~~---------~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
|.+.++...+ +.++. ......+|+..||. ++|||--+..
T Consensus 89 GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT---tagTGSE~t~ 139 (386)
T cd08191 89 GSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPT---TAGTGSEVTP 139 (386)
T ss_pred chHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeC---CCcchhhhCC
Confidence 6666665543 22211 00112589999998 5566654443
No 53
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=94.66 E-value=0.3 Score=51.18 Aligned_cols=103 Identities=18% Similarity=0.284 Sum_probs=65.6
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE-eC---ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT---QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~-T~---~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
.+|++|+..+.+-+.. ..+ +++...|+.+++++.++. .+ ......++++.+...+.|.||.+|| |++.++.-
T Consensus 26 ~kr~livtd~~~~~~~--g~~-~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK 101 (383)
T cd08186 26 ISKVLLVTGKSAYKKS--GAW-DKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG-GSPIDSAK 101 (383)
T ss_pred CCEEEEEcCccHHhhc--ChH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHH
Confidence 3789999887664322 234 589999999999887663 11 2244556666666568899999999 66666554
Q ss_pred Hh---hcCcCc----------cccCCCcEEEecCcCCCCccccccee
Q 011290 185 GL---LEREDW----------NDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 185 GL---~~~~~~----------~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.+ +..+.. .....+|+..||. ++|||.-+..
T Consensus 102 ~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT---TagTGSE~t~ 145 (383)
T cd08186 102 SAAILLEHPGKTARDLYEFKFTPEKALPLIAINL---THGTGTEVDR 145 (383)
T ss_pred HHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeC---CChhhhhhCC
Confidence 43 222110 0112589999998 5677655443
No 54
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=94.42 E-value=0.28 Score=51.11 Aligned_cols=92 Identities=18% Similarity=0.289 Sum_probs=61.7
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+|++|+..+..-+ . +.+++...|+.+++++.+... .......++++.+...+.|.||.+|| |.+.++...+
T Consensus 30 ~~~livtd~~~~~----~-~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~i 103 (366)
T PRK09423 30 KRALVIADEFVLG----I-VGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG-GKTLDTAKAV 103 (366)
T ss_pred CEEEEEEChhHHH----H-HHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-hHHHHHHHHH
Confidence 7899998665532 2 447899999999887632221 12233445555555567899999999 7888887776
Q ss_pred hcCcCccccCCCcEEEecCcCCCCcccccc
Q 011290 187 LEREDWNDAIKVPLGVVPADFLDAGTGNGM 216 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~~~~~~GSgN~~ 216 (489)
... ..+|+..||. ++|||-.+
T Consensus 104 A~~------~~~p~i~IPT---tagtgSe~ 124 (366)
T PRK09423 104 ADY------LGVPVVIVPT---IASTDAPT 124 (366)
T ss_pred HHH------cCCCEEEeCC---ccccCccc
Confidence 543 2689999998 35555443
No 55
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=94.32 E-value=0.32 Score=50.21 Aligned_cols=84 Identities=20% Similarity=0.209 Sum_probs=58.5
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC----ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~----~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+.+-+ . +.+++...|+.+++++.++.-- ......++++.+...++|.||.+|| |++.++...
T Consensus 23 ~r~liv~d~~~~~----~-~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~aK~ 96 (345)
T cd08171 23 KKVVVIGGKTALA----A-AKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGG-GKAIDTVKV 96 (345)
T ss_pred CEEEEEeCHHHHH----H-HHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHH
Confidence 7899998765532 2 2468999999999987654311 2223444555444568999999999 888888777
Q ss_pred hhcCcCccccCCCcEEEecC
Q 011290 186 LLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~ 205 (489)
+.... .+|+..||.
T Consensus 97 ia~~~------~~p~i~VPT 110 (345)
T cd08171 97 LADKL------GKPVFTFPT 110 (345)
T ss_pred HHHHc------CCCEEEecC
Confidence 65432 579999998
No 56
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=94.28 E-value=0.053 Score=54.33 Aligned_cols=99 Identities=17% Similarity=0.270 Sum_probs=69.4
Q ss_pred cccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEe
Q 011290 124 IASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 124 ~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
|-.+.+.+.+...|+.+||+..++.-. .+.+. ....|.||.+|||||+--....+.... ++-||+=
T Consensus 71 Kvhkn~~~~~~~~l~k~giesklv~R~------~lsq~--i~waD~VisvGGDGTfL~Aasrv~~~~------~PViGvN 136 (395)
T KOG4180|consen 71 KVHKNAIKFCQEELSKAGIESKLVSRN------DLSQP--IRWADMVISVGGDGTFLLAASRVIDDS------KPVIGVN 136 (395)
T ss_pred HHHHHHHHHHHHHHhhCCcceeeeehh------hccCc--CchhhEEEEecCccceeehhhhhhccC------Cceeeec
Confidence 334557788999999999997665321 12222 345799999999999987777666552 4456653
Q ss_pred --cCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCeeee
Q 011290 204 --PADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLL 245 (489)
Q Consensus 204 --P~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~l 245 (489)
|. ||---++-.- ..+.++..|+..+..|.-..+
T Consensus 137 tDP~-----~Seg~lcL~~----~~~~n~~~al~k~~sgnF~wv 171 (395)
T KOG4180|consen 137 TDPT-----GSEGHLCLPD----KYPSNPAGALCKLTSGNFEWV 171 (395)
T ss_pred CCCC-----cCcceEeccc----cCCCCcHHHHHHHHhccHHHh
Confidence 67 7777776554 456678899999999876654
No 57
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=94.27 E-value=0.46 Score=49.63 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=62.0
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC---hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~---~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+|++|+..+.+. .+ +++...|+.+++++.++.... .....+.++.+...++|.||.+|| |.+.++...+
T Consensus 23 ~r~livtd~~~~------~~-~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK~i 94 (374)
T cd08183 23 RRVLLVTGASSL------RA-AWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGG-GSVIDAGKAI 94 (374)
T ss_pred CcEEEEECCchH------HH-HHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecC-chHHHHHHHH
Confidence 789999887663 33 678899999999887763211 123445555555568999999998 6666655443
Q ss_pred ---hcCcC-------------ccccCCCcEEEecCcCCCCcccccce
Q 011290 187 ---LERED-------------WNDAIKVPLGVVPADFLDAGTGNGMI 217 (489)
Q Consensus 187 ---~~~~~-------------~~~~~~~plgiIP~~~~~~GSgN~~a 217 (489)
+..+. ......+|+..||. ++|||.-+.
T Consensus 95 a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPT---tagTGSE~t 138 (374)
T cd08183 95 AALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPT---TAGTGSEVT 138 (374)
T ss_pred HHHHcCCCCHHHHHhccCccccCCCCCCCEEEecC---CCchhHHhC
Confidence 21110 00113589999998 567765443
No 58
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.25 E-value=0.3 Score=48.77 Aligned_cols=92 Identities=15% Similarity=0.245 Sum_probs=55.8
Q ss_pred HhHHHHHHhCCCcEEEEEeCCh--hHHH----HHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEec
Q 011290 131 DDVKPLLEDANIQFTVQETTQQ--LHAK----EIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~--~ha~----el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP 204 (489)
+++...|++.|+++.+...+.. ++.. .. .++. .++|.|+++|||||+-.++.-+... .+|+--|-
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~~-~~~d~vi~iGGDGT~L~aa~~~~~~-------~~PilgIn 73 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASL-EEIG-QRAQLAIVIGGDGNMLGRARVLAKY-------DIPLIGIN 73 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCCh-HHhC-cCCCEEEEECCcHHHHHHHHHhccC-------CCcEEEEe
Confidence 4567778888887655432110 0000 00 1221 3589999999999999998877653 57766678
Q ss_pred CcCCCCcccccceeccccccCCCCcHHHHHHHHHc-CCe
Q 011290 205 ADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIR-GHK 242 (489)
Q Consensus 205 ~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~-G~~ 242 (489)
. |+=.-|+. + .+.+..+++..+++ |+.
T Consensus 74 ~-----G~lGFL~~-~-----~~~~~~~~l~~~~~~g~~ 101 (272)
T PRK02231 74 R-----GNLGFLTD-I-----DPKNAYEQLEACLERGEF 101 (272)
T ss_pred C-----CCCccccc-C-----CHHHHHHHHHHHHhcCCc
Confidence 8 87444432 1 23345567777777 753
No 59
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=94.17 E-value=0.47 Score=49.62 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=61.9
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T----~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+..-+ ...+ ++++..|+.+++++.++.- -......++++.+...+.|.||.+|| |++.++...
T Consensus 29 ~~~lvv~~~~~~~---~~~~-~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVK---IGVV-EKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGG-GSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhh---cCcH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHH
Confidence 6888887765422 1234 6899999999998876521 11233455566665568999999998 666665544
Q ss_pred hh---cCc---------CccccCCCcEEEecCcCCCCcccccce
Q 011290 186 LL---ERE---------DWNDAIKVPLGVVPADFLDAGTGNGMI 217 (489)
Q Consensus 186 L~---~~~---------~~~~~~~~plgiIP~~~~~~GSgN~~a 217 (489)
+. ..+ .......+|+..||. ++|||--+.
T Consensus 104 ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT---tagTgSe~t 144 (377)
T cd08176 104 IGIVATNGGDIRDYEGVAKSKKPAVPIVAINT---TAGTASEVT 144 (377)
T ss_pred HHHHHhCCCCHHHHhCcCccCCCCCCEEEeCC---CCcchhccC
Confidence 32 110 000123589999998 456665443
No 60
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=94.15 E-value=0.65 Score=48.12 Aligned_cols=85 Identities=24% Similarity=0.264 Sum_probs=60.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~--~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.++++|+.++..-+ .+.++++..|+..+ ++.++...+ .....++++.+...+.|.||.+|| |++.++.-.+
T Consensus 34 ~~~~livtd~~~~~-----~~~~~l~~~l~~~~-~~~~~~~~~~t~~~v~~~~~~~~~~~~d~IIaiGG-Gsv~D~ak~v 106 (350)
T PRK00843 34 TGRALIVTGPTTKK-----IAGDRVEENLEDAG-DVEVVIVDEATMEEVEKVEEKAKDVNAGFLIGVGG-GKVIDVAKLA 106 (350)
T ss_pred CCeEEEEECCcHHH-----HHHHHHHHHHHhcC-CeeEEeCCCCCHHHHHHHHHHhhccCCCEEEEeCC-chHHHHHHHH
Confidence 36899999887643 34568888998887 665554333 233456666665557899999998 8888888776
Q ss_pred hcCcCccccCCCcEEEecCc
Q 011290 187 LEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~~ 206 (489)
... ..+|+-.||.+
T Consensus 107 A~~------rgip~I~IPTT 120 (350)
T PRK00843 107 AYR------LGIPFISVPTA 120 (350)
T ss_pred HHh------cCCCEEEeCCC
Confidence 533 26899999994
No 61
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=94.05 E-value=0.33 Score=50.16 Aligned_cols=92 Identities=16% Similarity=0.233 Sum_probs=61.3
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+|++|+.-+...+ . +.+++...|+.+++.+.+... .......+.++.+...+.|.||.+|| |.+-++...+
T Consensus 23 ~r~livt~~~~~~----~-~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~i 96 (351)
T cd08170 23 KRALIIADEFVLD----L-VGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGG-GKTLDTAKAV 96 (351)
T ss_pred CeEEEEECHHHHH----H-HHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecC-chhhHHHHHH
Confidence 7888887544432 2 446899999999987643211 12234555555655568999999999 7777777766
Q ss_pred hcCcCccccCCCcEEEecCcCCCCcccccc
Q 011290 187 LEREDWNDAIKVPLGVVPADFLDAGTGNGM 216 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~~~~~~GSgN~~ 216 (489)
... ..+|+..||. ++|||--+
T Consensus 97 a~~------~~~P~iaIPT---TagTgse~ 117 (351)
T cd08170 97 ADY------LGAPVVIVPT---IASTDAPT 117 (351)
T ss_pred HHH------cCCCEEEeCC---ccccCccc
Confidence 443 2689999998 34555443
No 62
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=94.02 E-value=0.39 Score=47.28 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=39.8
Q ss_pred CCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCC
Q 011290 165 SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGH 241 (489)
Q Consensus 165 ~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~ 241 (489)
.++|.||++|||||+-.+++-+... .+|+--|.+ |+-.-|+... .+.+...++..+..+.
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~-------~~PvlGIN~-----G~lGFL~~~~-----~~~e~~~~l~~~~~~~ 83 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNS-------GKPVYGMNR-----GSVGFLMNEY-----SEDDLLERIAAAEPTV 83 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCC-------CCeEEEEeC-----CCCCcccCCC-----CHHHHHHHHHHhhcCc
Confidence 4689999999999999999987664 578776888 8643333211 1223445555555553
No 63
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=93.94 E-value=0.66 Score=48.63 Aligned_cols=101 Identities=20% Similarity=0.315 Sum_probs=62.2
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~--~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+..-+ ...+ ++++..|+.+++++.++. ... .....+.++.+...++|.||.+|| |.+-++...
T Consensus 31 ~~~lvvtd~~~~~---~g~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 105 (382)
T PRK10624 31 KKALIVTDKTLVK---CGVV-AKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGG-GSPQDTCKA 105 (382)
T ss_pred CEEEEEeCcchhh---Ccch-HHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHH
Confidence 6899998764322 1134 689999999999887762 112 234445555555568999999998 666666543
Q ss_pred h---hcCcCc-----------cccCCCcEEEecCcCCCCccccccee
Q 011290 186 L---LEREDW-----------NDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 186 L---~~~~~~-----------~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
+ +..++. .....+|+..||. ++|||--+..
T Consensus 106 ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPT---TagTGse~t~ 149 (382)
T PRK10624 106 IGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPT---TAGTAAEVTI 149 (382)
T ss_pred HHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECC---CCchhhhhcc
Confidence 2 222110 0113589999998 4566544433
No 64
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=93.90 E-value=0.66 Score=49.21 Aligned_cols=99 Identities=22% Similarity=0.333 Sum_probs=58.8
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe--CC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T--~~--~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+..-+ ...+ +++...|+.+|+++.++.- .. .....+.++.+...+.|.||.+|| |.+-++...
T Consensus 24 ~~vlivt~~~~~~---~g~~-~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GSviD~AKa 98 (414)
T cd08190 24 RRVCLVTDPNLAQ---LPPV-KVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGG-GSVIDTAKA 98 (414)
T ss_pred CeEEEEECcchhh---cchH-HHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 6899998765422 1123 6789999999998877631 11 223445555555568999999999 444444322
Q ss_pred h---hcCc---------------CccccCCCcEEEecCcCCCCcccccc
Q 011290 186 L---LERE---------------DWNDAIKVPLGVVPADFLDAGTGNGM 216 (489)
Q Consensus 186 L---~~~~---------------~~~~~~~~plgiIP~~~~~~GSgN~~ 216 (489)
+ +..+ .......+|+..||. ++|||--+
T Consensus 99 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT---TagTGSE~ 144 (414)
T cd08190 99 ANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPT---TAGTGSET 144 (414)
T ss_pred HHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCC---CCchhhhh
Confidence 1 1111 001112479999998 55665543
No 65
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=93.81 E-value=0.33 Score=50.21 Aligned_cols=93 Identities=17% Similarity=0.173 Sum_probs=64.0
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE-eCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~-T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
+|++|+..+..- . .+.++++..|+..++.+.++. ........++++.+...++|.||.+|| |++.++.-.+..
T Consensus 24 ~~~liv~d~~~~----~-~~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGG-Gs~~D~aK~ia~ 97 (347)
T cd08172 24 KRPLIVTGPRSW----A-AAKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAKENGADVIIGIGG-GKVLDTAKAVAD 97 (347)
T ss_pred CeEEEEECHHHH----H-HHHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHH
Confidence 789999988772 2 244678888876666654442 134445556666666668999999998 888888877655
Q ss_pred CcCccccCCCcEEEecCcCCCCcccccce
Q 011290 189 REDWNDAIKVPLGVVPADFLDAGTGNGMI 217 (489)
Q Consensus 189 ~~~~~~~~~~plgiIP~~~~~~GSgN~~a 217 (489)
.. .+|+..||. ++|||-.+.
T Consensus 98 ~~------~~p~i~VPT---T~gtgse~t 117 (347)
T cd08172 98 RL------GVPVITVPT---LAATCAAWT 117 (347)
T ss_pred Hh------CCCEEEecC---ccccCcccc
Confidence 42 689999998 345554333
No 66
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=93.68 E-value=0.91 Score=46.73 Aligned_cols=83 Identities=20% Similarity=0.271 Sum_probs=60.3
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~--~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~ 187 (489)
+|++|+..+...+ .+.++++..|+.++ .+.++.... ...+.++++.+...+.|.||++|| |++.++.-.+.
T Consensus 26 ~~~liv~d~~~~~-----~~~~~v~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~d~iIaiGG-Gs~~D~aK~~a 98 (339)
T cd08173 26 GRVLVVTGPTTKS-----IAGKKVEALLEDEG-EVDVVIVEDATYEEVEKVESSARDIGADFVIGVGG-GRVIDVAKVAA 98 (339)
T ss_pred CeEEEEECCchHH-----HHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEeCC-chHHHHHHHHH
Confidence 6899998876533 24478999999988 766554332 333445666665567899999998 88899888775
Q ss_pred cCcCccccCCCcEEEecC
Q 011290 188 EREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 188 ~~~~~~~~~~~plgiIP~ 205 (489)
.. ..+|+..||.
T Consensus 99 ~~------~~~p~i~iPT 110 (339)
T cd08173 99 YK------LGIPFISVPT 110 (339)
T ss_pred Hh------cCCCEEEecC
Confidence 43 2689999998
No 67
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=93.62 E-value=0.49 Score=49.60 Aligned_cols=101 Identities=22% Similarity=0.261 Sum_probs=63.1
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe--CC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T--~~--~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+.-+.+.+.. ..+ ++++..|+.+|+++.++.- .+ .....+.++.+...++|.||.+|| |...++..+
T Consensus 29 ~r~livt~~~~~~~~--~~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 104 (382)
T cd08187 29 KKVLLVYGGGSIKKN--GLY-DRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGG-GSVIDSAKA 104 (382)
T ss_pred CEEEEEeCCcHHHhc--CcH-HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHH
Confidence 789999877665432 233 6899999999998766521 11 233445555555568999999999 666666554
Q ss_pred hhc---CcC---------ccccCCCcEEEecCcCCCCcccccce
Q 011290 186 LLE---RED---------WNDAIKVPLGVVPADFLDAGTGNGMI 217 (489)
Q Consensus 186 L~~---~~~---------~~~~~~~plgiIP~~~~~~GSgN~~a 217 (489)
+.. ... ......+|+-.||. ++|||--+.
T Consensus 105 ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT---TagTGsE~t 145 (382)
T cd08187 105 IAAGAPYDGDVWDFFTGKAKIEKALPVGTVLT---LAATGSEMN 145 (382)
T ss_pred HHhHhhCCCCHHHHhcccCCCCCCCCEEEEeC---CCchhhccC
Confidence 322 100 00113589999998 456664443
No 68
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=93.41 E-value=0.74 Score=47.52 Aligned_cols=90 Identities=13% Similarity=0.213 Sum_probs=60.3
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe------CChhHHHHHHHHhhcC---CCceEEEEcCCC
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLS---KYDGIVCVSGDG 177 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T------~~~~ha~el~~~~~~~---~~d~IV~vGGDG 177 (489)
...+|++|+.++..-+ .+.+++...|+.+|+++.++.- .......++++.+... +.|.||.+|| |
T Consensus 22 ~~~~~~livtd~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-G 95 (345)
T cd08195 22 PKGSKILIVTDENVAP-----LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGG-G 95 (345)
T ss_pred cCCCeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-h
Confidence 4458999999876643 3557899999999987764432 2334555666555433 4489999987 7
Q ss_pred hHHHHHHHhhcCcCccccCCCcEEEecCc
Q 011290 178 ILVEVVNGLLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 178 tl~EVvnGL~~~~~~~~~~~~plgiIP~~ 206 (489)
++.++.-.+.... ...+|+..||.+
T Consensus 96 sv~D~ak~vA~~~----~rgip~i~VPTT 120 (345)
T cd08195 96 VVGDLAGFVAATY----MRGIDFIQIPTT 120 (345)
T ss_pred HHHhHHHHHHHHH----hcCCCeEEcchh
Confidence 8888776553210 026899999983
No 69
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=93.37 E-value=0.67 Score=48.52 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=61.8
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~--~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+..-+ .. +.++++..|+.+++++.++. ..+ .....+.++.+...+.|.||.+|| |.+-++..+
T Consensus 30 ~r~lvvt~~~~~~---~g-~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG-GSviD~aKa 104 (379)
T TIGR02638 30 KKALVVTDKDLIK---FG-VADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG-GSPIDTAKA 104 (379)
T ss_pred CEEEEEcCcchhh---cc-chHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHH
Confidence 6899998764422 11 33689999999999887762 112 234455555655568999999999 566655543
Q ss_pred h---hcCcC-----------ccccCCCcEEEecCcCCCCcccccce
Q 011290 186 L---LERED-----------WNDAIKVPLGVVPADFLDAGTGNGMI 217 (489)
Q Consensus 186 L---~~~~~-----------~~~~~~~plgiIP~~~~~~GSgN~~a 217 (489)
+ +..+. ......+|+..||. ++|||--+.
T Consensus 105 ia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT---TagTGse~t 147 (379)
T TIGR02638 105 IGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPT---TAGTAAEVT 147 (379)
T ss_pred HHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECC---CCchhhhhC
Confidence 2 22110 00113589999999 456654333
No 70
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=92.92 E-value=0.88 Score=47.42 Aligned_cols=97 Identities=23% Similarity=0.361 Sum_probs=59.9
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~--~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+..-+ ...+ ++++..|+.+|+++.++. ..+ .....+.++.+...+.|.||.+|| |.+.++.-.
T Consensus 25 ~~~liv~~~~~~~---~~~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GSviD~aK~ 99 (370)
T cd08192 25 KRPLIVTDPGLAA---LGLV-ARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG-GSALDLAKA 99 (370)
T ss_pred CeEEEEcCcchhh---CccH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6888887765421 2234 689999999999887652 111 123445555555578999999998 667766654
Q ss_pred hhcC---cC-----------c--cccCCCcEEEecCcCCCCcccc
Q 011290 186 LLER---ED-----------W--NDAIKVPLGVVPADFLDAGTGN 214 (489)
Q Consensus 186 L~~~---~~-----------~--~~~~~~plgiIP~~~~~~GSgN 214 (489)
+... +. + .....+|+..||. ++|||-
T Consensus 100 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPT---tagtgs 141 (370)
T cd08192 100 VALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPT---TAGTGS 141 (370)
T ss_pred HHHHHhCCCCHHHHhcccccccccCCCCCCEEEecC---CCchhh
Confidence 3211 10 0 0012489999998 455543
No 71
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=92.83 E-value=1.2 Score=46.34 Aligned_cols=96 Identities=20% Similarity=0.316 Sum_probs=58.6
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe--CC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T--~~--~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+.+- +.+.++..|+.+++++.++.- .+ .....++++.+...++|.||.+|| |++.++...
T Consensus 24 ~~~livtd~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~~D~aK~ 95 (367)
T cd08182 24 KRVLLVTGPRSA-------IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGG-GSVLDTAKA 95 (367)
T ss_pred CeEEEEeCchHH-------HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-cHHHHHHHH
Confidence 688888765552 235688889988887766521 11 233455555555567899999998 666666544
Q ss_pred hh---cCc-------------CccccCCCcEEEecCcCCCCcccccc
Q 011290 186 LL---ERE-------------DWNDAIKVPLGVVPADFLDAGTGNGM 216 (489)
Q Consensus 186 L~---~~~-------------~~~~~~~~plgiIP~~~~~~GSgN~~ 216 (489)
+. ..+ .......+|+..||. ++|||--+
T Consensus 96 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPT---tagtgse~ 139 (367)
T cd08182 96 LAALLGAPREALEDLRIRNKERENRERALPLIAIPT---TAGTGSEV 139 (367)
T ss_pred HHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCC---CCCchhhh
Confidence 32 111 000123689999998 34555433
No 72
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=92.81 E-value=0.91 Score=47.26 Aligned_cols=97 Identities=23% Similarity=0.343 Sum_probs=61.9
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--e--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T--~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+.+-+ .. +.+++...|+..++++.++. + .......++++.+...+.|.||.+|| |++.++...
T Consensus 24 ~~~lvv~~~~~~~---~~-~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVK---TG-VLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG-GSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhh---Cc-cHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6899998876644 12 33689999999988876653 1 13344556666665568999999998 566665544
Q ss_pred h---hcCcC---------ccccCCCcEEEecCcCCCCcccc
Q 011290 186 L---LERED---------WNDAIKVPLGVVPADFLDAGTGN 214 (489)
Q Consensus 186 L---~~~~~---------~~~~~~~plgiIP~~~~~~GSgN 214 (489)
+ +..++ ......+|+..||. ++|||-
T Consensus 99 va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPT---t~gtgs 136 (370)
T cd08551 99 IALLATNPGDIWDYEGGKPVIKPALPLIAIPT---TAGTGS 136 (370)
T ss_pred HHHHHhCCCcHHHHhCcccccCCCCCEEEecC---CCcchh
Confidence 3 21110 01112689999999 445553
No 73
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=92.76 E-value=0.91 Score=46.91 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=58.3
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe------CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T------~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVv 183 (489)
+|++|+..+..-+ .+.+++...|+.+++++.++.- .......++++.+.. +.|.||.+|| |.+-++.
T Consensus 24 ~~~livtd~~~~~-----~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGG-Gs~~D~a 96 (348)
T cd08175 24 KKALIVADENTYA-----AAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGS-GTINDIT 96 (348)
T ss_pred CcEEEEECCcHHH-----HHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECC-cHHHHHH
Confidence 6788887664422 1236899999999997765432 222344556566544 8999999999 7888888
Q ss_pred HHhhcCcCccccCCCcEEEecC
Q 011290 184 NGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 184 nGL~~~~~~~~~~~~plgiIP~ 205 (489)
-.+... ..+|+-.||.
T Consensus 97 K~vA~~------~~~p~i~IPT 112 (348)
T cd08175 97 KYVSYK------TGIPYISVPT 112 (348)
T ss_pred HHHHHh------cCCCEEEecC
Confidence 877543 2689999998
No 74
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=92.60 E-value=1.5 Score=45.80 Aligned_cols=101 Identities=21% Similarity=0.292 Sum_probs=61.3
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~--~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+..-+ .-+.+++...|+.+++++.++. .. ...+..+.++.+...+.|.||.+|| |.+-++...
T Consensus 29 ~~~livt~~~~~~----~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GsviD~AK~ 103 (377)
T cd08188 29 KKVLLVSDPGVIK----AGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGG-GSPIDCAKG 103 (377)
T ss_pred CeEEEEeCcchhh----CccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6888887654311 1134689999999999887653 11 1233555555555568999999998 666666543
Q ss_pred h---hcCcC---------ccccCCCcEEEecCcCCCCccccccee
Q 011290 186 L---LERED---------WNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 186 L---~~~~~---------~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
+ +..+. ......+|+..||. ++|||--+..
T Consensus 104 ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT---T~gTgSE~t~ 145 (377)
T cd08188 104 IGIVASNGGHILDFEGVDKITRPLPPLICIPT---TAGSGADVSQ 145 (377)
T ss_pred HHHHHHCCCCHHHHhCcccccCCCCCEEEECC---CCccccccCC
Confidence 2 22110 00112479999998 5666644443
No 75
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=92.56 E-value=1.2 Score=46.59 Aligned_cols=99 Identities=25% Similarity=0.370 Sum_probs=61.2
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE----eCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE----TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~----T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+.-+.-. ....+ ++++..|+++++++.++. .-......++++.+...+.|.||.+|| |.+.++...
T Consensus 27 ~~~livt~~~~~---~~~~~-~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-Gs~iD~aK~ 101 (376)
T cd08193 27 KRVLVVTDPGIL---KAGLI-DPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGG-GSSMDVAKL 101 (376)
T ss_pred CeEEEEcCcchh---hCccH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 678888665321 12234 679999999999877652 112333556666665568999999998 677766654
Q ss_pred hhc---Cc---------CccccCCCcEEEecCcCCCCcccccc
Q 011290 186 LLE---RE---------DWNDAIKVPLGVVPADFLDAGTGNGM 216 (489)
Q Consensus 186 L~~---~~---------~~~~~~~~plgiIP~~~~~~GSgN~~ 216 (489)
+.. .+ .......+|+..||. ++|||--+
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT---TagtgSe~ 141 (376)
T cd08193 102 VAVLAGSDQPLADMYGVDLVAGPRLPLILVPT---TAGTGSEV 141 (376)
T ss_pred HHHHHHCCCCHHHHhCCCccCCCCCCEEEeCC---CCcchHhh
Confidence 321 11 001113589999998 45665433
No 76
>PRK10586 putative oxidoreductase; Provisional
Probab=92.54 E-value=0.99 Score=47.02 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=61.2
Q ss_pred HHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe-CChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011290 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-TQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 99 l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T-~~~~ha~el~~~~~~~~~d~IV~vGGDG 177 (489)
|.+.+...+. +|.+|+..+.+ .+.....+.+.|+.+++.+..+.- ....++.++.+... .+.|.||.+|| |
T Consensus 25 l~~~~~~~g~-~~~lvv~g~~~-----~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~~l~~~~~-~~~d~iiavGG-G 96 (362)
T PRK10586 25 LHDFFTDEQL-SRAVWIYGERA-----IAAAQPYLPPAFELPGAKHILFRGHCSESDVAQLAAASG-DDRQVVIGVGG-G 96 (362)
T ss_pred HHHHHHhcCC-CeEEEEEChHH-----HHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHhc-cCCCEEEEecC-c
Confidence 4444544443 67888865543 223335678889999987754432 22334555655543 46899999997 7
Q ss_pred hHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 178 ILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 178 tl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
...++...+.... .+|+..||.
T Consensus 97 s~iD~aK~~a~~~------~~p~i~vPT 118 (362)
T PRK10586 97 ALLDTAKALARRL------GLPFVAIPT 118 (362)
T ss_pred HHHHHHHHHHhhc------CCCEEEEeC
Confidence 8888888776542 689999998
No 77
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=92.41 E-value=1.2 Score=45.45 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=61.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T----~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
.+|++|+..+..-+ .+.+++...|+.+ +++.++.- ....+..++++.+...+.|.||.+|| |++.++.-
T Consensus 23 ~~~~liv~~~~~~~-----~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~~D~aK 95 (332)
T cd07766 23 FDRALVVSDEGVVK-----GVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGG-GSTLDTAK 95 (332)
T ss_pred CCeEEEEeCCchhh-----hHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-chHHHHHH
Confidence 46899998766543 2346889999887 77766531 23344556666666568999999987 78888776
Q ss_pred HhhcCcCccccCCCcEEEecCcCCCCccc
Q 011290 185 GLLEREDWNDAIKVPLGVVPADFLDAGTG 213 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~~~~~~GSg 213 (489)
.+..... ..+|+..||. ++||+
T Consensus 96 ~ia~~~~----~~~p~i~iPT---t~~tg 117 (332)
T cd07766 96 AVAALLN----RGLPIIIVPT---TAATG 117 (332)
T ss_pred HHHHHhc----CCCCEEEEeC---CCchh
Confidence 6533211 2689999998 44554
No 78
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=92.38 E-value=1.3 Score=45.50 Aligned_cols=80 Identities=20% Similarity=0.192 Sum_probs=54.6
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCC-cEEEEEeCChhHHHHHHHHhhcC-CCceEEEEcCCChHHHHHHHhh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHAKEIVKVLDLS-KYDGIVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i-~~~v~~T~~~~ha~el~~~~~~~-~~d~IV~vGGDGtl~EVvnGL~ 187 (489)
+|++|+..+.. + +++...|+.+++ .+..+.........++.+.+... +.|.||.+|| |++.++.-.+.
T Consensus 26 ~r~livtd~~~--------~-~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~iIaiGG-Gsv~D~aK~vA 95 (331)
T cd08174 26 GRVAVVSGPGV--------G-EQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIPNVDAVVGIGG-GKVIDVAKYAA 95 (331)
T ss_pred CceEEEECCcH--------H-HHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhccCCCEEEEeCC-cHHHHHHHHHH
Confidence 68999988765 3 467788887776 44444322223334444444333 5899999998 89999888776
Q ss_pred cCcCccccCCCcEEEecC
Q 011290 188 EREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 188 ~~~~~~~~~~~plgiIP~ 205 (489)
.. ..+|+..||.
T Consensus 96 ~~------~~~p~i~vPT 107 (331)
T cd08174 96 FL------RGIPLSVPTT 107 (331)
T ss_pred hh------cCCCEEEecC
Confidence 54 3789999998
No 79
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=92.23 E-value=1 Score=46.82 Aligned_cols=90 Identities=18% Similarity=0.281 Sum_probs=60.2
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE--E----eCChhHHHHHHHHhhcCCC----ceEEEEcCC
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--E----TTQQLHAKEIVKVLDLSKY----DGIVCVSGD 176 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~--~----T~~~~ha~el~~~~~~~~~----d~IV~vGGD 176 (489)
+.+++++||..+..-+ .+.+++...|+.+++++..+ . ...-....++++.+...+. |.||++||
T Consensus 24 ~~~~~~lvVtd~~v~~-----~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG- 97 (354)
T cd08199 24 EGSGRRFVVVDQNVDK-----LYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGG- 97 (354)
T ss_pred cCCCeEEEEECccHHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECC-
Confidence 3568999999876532 34478999999999987743 1 2233455556555543333 99998887
Q ss_pred ChHHHHHHHhhcCcCccccCCCcEEEecCc
Q 011290 177 GILVEVVNGLLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 177 Gtl~EVvnGL~~~~~~~~~~~~plgiIP~~ 206 (489)
|++.++.-....... ..+|+-.||.+
T Consensus 98 G~v~D~ak~~A~~~~----rg~p~i~VPTT 123 (354)
T cd08199 98 GVLTDVAGLAASLYR----RGTPYVRIPTT 123 (354)
T ss_pred cHHHHHHHHHHHHhc----CCCCEEEEcCc
Confidence 788888776652100 26899999994
No 80
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=92.16 E-value=2.1 Score=44.82 Aligned_cols=125 Identities=22% Similarity=0.234 Sum_probs=77.6
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh----hHH
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----LHA 155 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~----~ha 155 (489)
.++.|...+.+....++.. -.-+|.+|+-.|.--+ .. +.+++...|+.+++++.++.--.+ ...
T Consensus 8 ~~i~fG~g~l~~l~~~~~~--------~g~~r~liVTd~~~~~---~g-~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v 75 (377)
T COG1454 8 TEILFGRGSLKELGEEVKR--------LGAKRALIVTDRGLAK---LG-LLDKVLDSLDAAGIEYEVFDEVEPEPTIETV 75 (377)
T ss_pred ceEEecCChHHHHHHHHHh--------cCCCceEEEECCcccc---ch-hHHHHHHHHHhcCCeEEEecCCCCCCCHHHH
Confidence 3455555555444444331 1247899999886322 22 447899999999998877642222 223
Q ss_pred HHHHHHhhcCCCceEEEEcCCChHHHHHHHh---hcCcC---------ccccCCCcEEEecCcCCCCcccccceecc
Q 011290 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGL---LERED---------WNDAIKVPLGVVPADFLDAGTGNGMIKSL 220 (489)
Q Consensus 156 ~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL---~~~~~---------~~~~~~~plgiIP~~~~~~GSgN~~a~sl 220 (489)
.+-++.+...++|.||++|| |..-++..++ ...++ .....+.|+-.||. ++|||.-+.+.-
T Consensus 76 ~~~~~~~~~~~~D~iIalGG-GS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPT---TaGTGSEvT~~a 148 (377)
T COG1454 76 EAGAEVAREFGPDTIIALGG-GSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPT---TAGTGSEVTPFA 148 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCC-ccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecC---CCcchhhhcCeE
Confidence 34445556678999999999 6666655543 33321 00223489999999 778887776643
No 81
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=92.08 E-value=1.5 Score=45.99 Aligned_cols=101 Identities=19% Similarity=0.276 Sum_probs=60.9
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC----ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~----~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+.-+.. +....+ +++...|+.+++.+.++.-. ......+.++.+...+.|.||.+||= ..-++...
T Consensus 32 ~~~livt~~~~---~~~g~~-~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGG-S~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNML---TKLGMA-GDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGG-SPHDCAKG 106 (383)
T ss_pred CEEEEEcCcch---hhCccH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHH
Confidence 68888865432 112345 58999999999987665321 22345555555555789999999994 44443333
Q ss_pred h---hcCcC---------ccccCCCcEEEecCcCCCCccccccee
Q 011290 186 L---LERED---------WNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 186 L---~~~~~---------~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
+ +..+. ......+|+..||. ++|||--+..
T Consensus 107 ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPT---TagTGSE~t~ 148 (383)
T PRK09860 107 IALVAANGGDIRDYEGVDRSAKPQLPMIAINT---TAGTASEMTR 148 (383)
T ss_pred HHHHHHCCCCHHHHhCcCccCCCCCCEEEEeC---CCcchhccCc
Confidence 2 21110 00113589999998 5677765544
No 82
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=91.94 E-value=1.7 Score=45.13 Aligned_cols=88 Identities=16% Similarity=0.236 Sum_probs=59.0
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE-e-----CChhHHHHHHHHhhc---CCCceEEEEcCCChH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-T-----TQQLHAKEIVKVLDL---SKYDGIVCVSGDGIL 179 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~-T-----~~~~ha~el~~~~~~---~~~d~IV~vGGDGtl 179 (489)
.+|++|+..+...+ .+.+++...|+.+++++.++. . ..-....++++.+.. .+.|.||.+|| |++
T Consensus 31 ~~~~livtd~~~~~-----~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv 104 (358)
T PRK00002 31 GKKVAIVTDETVAP-----LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGG-GVI 104 (358)
T ss_pred CCeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cHH
Confidence 47899999876632 255789999999999877542 1 123444555555433 34699999987 888
Q ss_pred HHHHHHhhcCcCccccCCCcEEEecCc
Q 011290 180 VEVVNGLLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 180 ~EVvnGL~~~~~~~~~~~~plgiIP~~ 206 (489)
.++...+.... ...+|+..||.+
T Consensus 105 ~D~aK~iA~~~----~~gip~i~IPTT 127 (358)
T PRK00002 105 GDLAGFAAATY----MRGIRFIQVPTT 127 (358)
T ss_pred HHHHHHHHHHh----cCCCCEEEcCch
Confidence 88887664211 026899999993
No 83
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=91.90 E-value=2.1 Score=44.52 Aligned_cols=86 Identities=12% Similarity=0.114 Sum_probs=56.7
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE------eCChhHHHHHHHHhhcCCCc---eEEEEcCCChHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE------TTQQLHAKEIVKVLDLSKYD---GIVCVSGDGILV 180 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~------T~~~~ha~el~~~~~~~~~d---~IV~vGGDGtl~ 180 (489)
++++|+..+.-- +.+.+.+...|+.+++++.++. ...-....++++.+...+.| .||++|| |++.
T Consensus 24 ~rvlvVtd~~v~-----~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGG-Gsv~ 97 (355)
T cd08197 24 DKYLLVTDSNVE-----DLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGG-GVVG 97 (355)
T ss_pred CeEEEEECccHH-----HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 689999986542 2355789999999998765432 12333455555555444455 8888887 8888
Q ss_pred HHHHHhhcCcCccccCCCcEEEecC
Q 011290 181 EVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 181 EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
++.-.+..... ..+|+..||.
T Consensus 98 D~ak~~A~~~~----rgip~I~IPT 118 (355)
T cd08197 98 NIAGLLAALLF----RGIRLVHIPT 118 (355)
T ss_pred HHHHHHHHHhc----cCCCEEEecC
Confidence 87765532110 2689999999
No 84
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=91.66 E-value=1.1 Score=44.89 Aligned_cols=111 Identities=24% Similarity=0.270 Sum_probs=63.1
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHH--HHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE--IVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~e--l~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
++.++.+|..-. +.+.- +.+...+...+.++.+.. +-..+... -....+.+.+|.|+++|||||+-.+++-+..
T Consensus 2 ~~~i~~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~d~ivvlGGDGtlL~~~~~~~~ 77 (281)
T COG0061 2 KVGIVGRPDKPE--ALKIA-KRLYEFLKFKGVTVEVDQ-ELAEELKDFADYVDDDEEKADLIVVLGGDGTLLRAARLLAR 77 (281)
T ss_pred eEEEEecCCcHH--HHHHH-HHHHHHHHhcCceEEEec-hhhhhcccccccccccccCceEEEEeCCcHHHHHHHHHhcc
Confidence 345555554432 33322 455666665555443332 11111111 0112223578999999999999999997766
Q ss_pred CcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCee
Q 011290 189 REDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 243 (489)
Q Consensus 189 ~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~ 243 (489)
. .+|+-=|-. | .=+|-..+ .+.+.+.++.++.+|+.+
T Consensus 78 ~-------~~pilgin~-----G-~lGFLt~~-----~~~~~~~~~~~~~~~~~~ 114 (281)
T COG0061 78 L-------DIPVLGINL-----G-HLGFLTDF-----EPDELEKALDALLEGEYR 114 (281)
T ss_pred C-------CCCEEEEeC-----C-Cccccccc-----CHHHHHHHHHHHhcCceE
Confidence 4 467666666 6 23343333 134677888888887655
No 85
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=91.33 E-value=1.5 Score=46.21 Aligned_cols=102 Identities=21% Similarity=0.336 Sum_probs=62.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T----~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
.+|++|+..+..-+ .. +.+++...|+.+|+++.++.- .......++++.+...++|.||.+|| |.+.++.-
T Consensus 21 ~~k~liVtd~~~~~---~g-~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK 95 (398)
T cd08178 21 KKRAFIVTDRFMVK---LG-YVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGG-GSPMDAAK 95 (398)
T ss_pred CCeEEEEcChhHHh---Cc-cHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHH
Confidence 37888887543211 11 446899999999998776531 22234556666666678999999999 55555544
Q ss_pred Hhh---cCcC--cc------------------ccCCCcEEEecCcCCCCccccccee
Q 011290 185 GLL---ERED--WN------------------DAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 185 GL~---~~~~--~~------------------~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.+. ..+. .. ....+|+..||. ++|||--+..
T Consensus 96 ~iA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~I~VPT---TagTGSE~t~ 149 (398)
T cd08178 96 IMWLFYEHPEVDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPT---TSGTGSEVTP 149 (398)
T ss_pred HHHHHHhCCCcchhHhhhhhcccccccccccccCCCCCEEEeCC---CCcccccccC
Confidence 432 1110 00 003579999998 4577655543
No 86
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=91.32 E-value=1.9 Score=44.47 Aligned_cols=88 Identities=13% Similarity=0.189 Sum_probs=57.2
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe------CChhHHHHHHHHhhc---CCCceEEEEcCCChH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDL---SKYDGIVCVSGDGIL 179 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T------~~~~ha~el~~~~~~---~~~d~IV~vGGDGtl 179 (489)
.+|++|+.++..-+ .+.+++.+.|+.+|+++.++.- .......++++.+.. ++.|.||++|| |++
T Consensus 20 ~~~~livtd~~~~~-----~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv 93 (344)
T TIGR01357 20 PSKLVIITDETVAD-----LYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGG-GVV 93 (344)
T ss_pred CCeEEEEECCchHH-----HHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-hHH
Confidence 47899998766532 2457899999999987653221 122345555555433 34589999987 777
Q ss_pred HHHHHHhhcCcCccccCCCcEEEecCc
Q 011290 180 VEVVNGLLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 180 ~EVvnGL~~~~~~~~~~~~plgiIP~~ 206 (489)
.++...+.... ...+|+..||.+
T Consensus 94 ~D~aK~iA~~~----~~~~p~i~VPTT 116 (344)
T TIGR01357 94 GDLAGFVAATY----MRGIRFIQVPTT 116 (344)
T ss_pred HHHHHHHHHHH----ccCCCEEEecCc
Confidence 87776654211 026899999983
No 87
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=91.14 E-value=0.21 Score=51.53 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=59.6
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHH----------------------HHHHHhhc
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAK----------------------EIVKVLDL 164 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~----------------------el~~~~~~ 164 (489)
.+|++.+++.|+. ...-...+.+-++-+++.-. +++|+.-..-.... +++..+.
T Consensus 91 ~~p~~~~lv~K~~--d~s~~~~~~Elv~~ll~~~~-~i~V~v~~~~~~~~~f~~~~~~e~~~~~~~i~y~~~e~~~d~~- 166 (409)
T KOG2178|consen 91 LKPPKNLLVTKKN--DESVLEKFVELVEWLLQTFP-NITVYVEDKVAKDKQFSAGNLDESFGVKERILYWTTEGCDDLP- 166 (409)
T ss_pred cCCCceEEEEcCC--cHHHHHHHHHHHHHHHhhCC-CeEEEechhhhhhhhhcccchhhcccchhceEeeccccccccc-
Confidence 5677888888887 22223345444555555442 34443322211111 1111221
Q ss_pred CCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCC
Q 011290 165 SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGH 241 (489)
Q Consensus 165 ~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~ 241 (489)
..+|.|||+|||||+--... |.++. -+|+--.-. ||- +|-..+ .. .+..+.+..|+.|+
T Consensus 167 ~~~D~iItLGGDGTvL~aS~-LFq~~------VPPV~sFsl-----Gsl-GFLtpf----~f-~~f~~~l~~v~~~~ 225 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYASS-LFQRS------VPPVLSFSL-----GSL-GFLTPF----PF-ANFQEQLARVLNGR 225 (409)
T ss_pred cceeEEEEecCCccEEEehh-hhcCC------CCCeEEeec-----CCc-cccccc----cH-HHHHHHHHHHhcCc
Confidence 46899999999999866555 44442 456655555 532 221111 11 13457778888887
No 88
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=91.06 E-value=2.5 Score=43.67 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=56.9
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHh-CCCcEEEEE----eCChhHHHHHHHHhh---cCCCceEEEEcCCChHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLED-ANIQFTVQE----TTQQLHAKEIVKVLD---LSKYDGIVCVSGDGILV 180 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~-a~i~~~v~~----T~~~~ha~el~~~~~---~~~~d~IV~vGGDGtl~ 180 (489)
.++++|+..+.--+ .+.+++...|+. .++++.++. ......+.++++.+. ..+.|.||++|| |++.
T Consensus 23 ~~k~livtd~~v~~-----~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~ 96 (344)
T cd08169 23 FDQYFFISDSGVAD-----LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGG-GATG 96 (344)
T ss_pred CCeEEEEECccHHH-----HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 37899998865532 355789999987 677665553 123334555555443 356899999987 7777
Q ss_pred HHHHHhhcCcCccccCCCcEEEecCc
Q 011290 181 EVVNGLLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 181 EVvnGL~~~~~~~~~~~~plgiIP~~ 206 (489)
++.-.+...- ...+|+-.||.+
T Consensus 97 D~ak~vA~~~----~rgip~i~VPTT 118 (344)
T cd08169 97 DVAGFVASTL----FRGIAFIRVPTT 118 (344)
T ss_pred HHHHHHHHHh----ccCCcEEEecCC
Confidence 7766543210 026899999984
No 89
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=90.63 E-value=3.2 Score=43.37 Aligned_cols=102 Identities=21% Similarity=0.240 Sum_probs=63.4
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--e--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T--~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+.+-+. ...+ ++++..|+.+++++.++. . -......+.++.+...++|.||.+|| |.+-++...
T Consensus 26 ~r~livt~~~~~~~--~g~~-~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG-GS~iD~aK~ 101 (380)
T cd08185 26 KKALIVTGNGSSKK--TGYL-DRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG-GSSMDTAKA 101 (380)
T ss_pred CeEEEEeCCCchhh--ccHH-HHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHH
Confidence 78999998776322 2234 689999999999887652 1 12233455555555568999999998 555555544
Q ss_pred h---hcCcC--------------ccccCCCcEEEecCcCCCCccccccee
Q 011290 186 L---LERED--------------WNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 186 L---~~~~~--------------~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
+ +..+. ......+|+..||. ++|||.-+..
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT---tagTGSE~t~ 148 (380)
T cd08185 102 IAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITT---TAGTGSEADP 148 (380)
T ss_pred HHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcC---CChhhhccCC
Confidence 3 21110 00113589999998 4566654443
No 90
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=90.41 E-value=3.8 Score=42.45 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=58.4
Q ss_pred HHHhhhhcC-CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCCh--hHHHHHHHHhhcC---CCceE
Q 011290 99 LRDFIDSFG-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLS---KYDGI 170 (489)
Q Consensus 99 l~~~~~~~~-rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~~--~ha~el~~~~~~~---~~d~I 170 (489)
|.+.+...+ ..++++|+..|.-- .+.+...|+.+++++.++. +..+ ....+.++.+... +.|.|
T Consensus 14 l~~~~~~~g~~~~~~lvvtd~~~~--------~~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~I 85 (347)
T cd08184 14 LNDLLAPKRKNKDPAVFFVDDVFQ--------GKDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAI 85 (347)
T ss_pred HHHHHHHcCCCCCeEEEEECcchh--------hhHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEE
Confidence 333343333 23566776643331 1356677888899877662 1111 2234444444333 78999
Q ss_pred EEEcCCChHHHHHHHh---hcCcC-------c--cccCCCcEEEecCcCCCCccccccee
Q 011290 171 VCVSGDGILVEVVNGL---LERED-------W--NDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 171 V~vGGDGtl~EVvnGL---~~~~~-------~--~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
|.+|| |..-++...+ +..+. + .....+|+..||. ++|||--+..
T Consensus 86 IaiGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPT---TaGTGSE~t~ 141 (347)
T cd08184 86 VGIGG-GSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPT---LSGTGAEASR 141 (347)
T ss_pred EEeCC-cHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeC---CCccccccCC
Confidence 99998 5555544433 22111 0 0112478999997 5577655443
No 91
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=89.14 E-value=4.9 Score=42.36 Aligned_cols=101 Identities=21% Similarity=0.337 Sum_probs=60.7
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCCh--hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~~--~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++++|+-.+.-- ....+ +++...|+++|+++.++. +..+ ....+.++.+...++|.||.+||=- .-++..+
T Consensus 50 ~~~lvv~~~~~~---~~g~~-~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS-~iD~AKa 124 (395)
T PRK15454 50 KHLFVMADSFLH---QAGMT-AGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGS-VLDAAKA 124 (395)
T ss_pred CEEEEEcCcchh---hCccH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChH-HHHHHHH
Confidence 677777544321 12234 679999999999887762 2122 3355555556557899999999944 4444333
Q ss_pred ---hhcCcC--c-------cccCCCcEEEecCcCCCCccccccee
Q 011290 186 ---LLERED--W-------NDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 186 ---L~~~~~--~-------~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
++..++ + .....+|+..||. ++|||--+..
T Consensus 125 ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT---taGTGSE~t~ 166 (395)
T PRK15454 125 VALLVTNPDSTLAEMSETSVLQPRLPLIAIPT---TAGTGSETTN 166 (395)
T ss_pred HHHHHhCCCccHHHHhcccccCCCCCEEEECC---CCcchhhhCC
Confidence 222221 1 0112579999998 5677655544
No 92
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=88.94 E-value=1.5 Score=45.51 Aligned_cols=99 Identities=24% Similarity=0.320 Sum_probs=62.4
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCC--hhHHHHHHHHhhcCCCceEEEEcCCChHH--HHHH
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILV--EVVN 184 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~--~~ha~el~~~~~~~~~d~IV~vGGDGtl~--EVvn 184 (489)
|++||.+| +-... ..+ +++...|+.+++++.++. ..+ .....++++.+...+.|.||.+||=-++. .++.
T Consensus 23 r~lvVt~~-~~~~~--~~~-~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va 98 (366)
T PF00465_consen 23 RVLVVTDP-SLSKS--GLV-DRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVA 98 (366)
T ss_dssp EEEEEEEH-HHHHH--THH-HHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHH
T ss_pred CEEEEECc-hHHhC--ccH-HHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHH
Confidence 99999988 43322 233 689999999999987765 222 23355666666667899999999955443 3344
Q ss_pred HhhcCcCcc----------ccCCCcEEEecCcCCCCcccccc
Q 011290 185 GLLEREDWN----------DAIKVPLGVVPADFLDAGTGNGM 216 (489)
Q Consensus 185 GL~~~~~~~----------~~~~~plgiIP~~~~~~GSgN~~ 216 (489)
-++..++.- ....+|+..||. ++|||--+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT---t~gtGsE~ 137 (366)
T PF00465_consen 99 LLLANPGDLRDLLGKGPPPTKPALPLIAIPT---TAGTGSEV 137 (366)
T ss_dssp HHHTSSSCGGGGGCECSCCSS--SEEEEEES---SSSSSGCC
T ss_pred hhccCCCcHHHHHhhccccccCCCcEEEeeC---Cccccccc
Confidence 444433110 112389999999 55665444
No 93
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=88.63 E-value=2.9 Score=43.70 Aligned_cols=101 Identities=20% Similarity=0.276 Sum_probs=61.8
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T----~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+.+-+. ...+ +++...|+.+|+++.++.- -......+.++.+...+.|.||.+|| |.+-++...
T Consensus 24 ~r~livt~~~~~~~--~g~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~AK~ 99 (375)
T cd08179 24 KKAFIVTGGGSMKK--FGFL-DKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGG-GSPIDAAKA 99 (375)
T ss_pred CeEEEEeCchHHHh--CChH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 78888876544322 1233 6899999999998876532 12233455556665568999999999 555555444
Q ss_pred h---hcCcC--cc----------ccCCCcEEEecCcCCCCcccccce
Q 011290 186 L---LERED--WN----------DAIKVPLGVVPADFLDAGTGNGMI 217 (489)
Q Consensus 186 L---~~~~~--~~----------~~~~~plgiIP~~~~~~GSgN~~a 217 (489)
+ +..+. .. ....+|+..||. ++|||--+.
T Consensus 100 ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPT---tagTGSE~t 143 (375)
T cd08179 100 MWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPS---TSGTATEVT 143 (375)
T ss_pred HHHHHhCCCcCHHHHhccccccccCCCCCEEEeCC---CCchhHhhC
Confidence 3 22211 00 012479999998 556665443
No 94
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=88.38 E-value=6 Score=41.31 Aligned_cols=100 Identities=22% Similarity=0.287 Sum_probs=60.8
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T----~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+..-+ ...+ +++...|+.+|+++.++.- .......+.++.+...+.|.||.+|| |.+-++...
T Consensus 27 ~~~lvvt~~~~~~---~g~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GS~~D~aK~ 101 (374)
T cd08189 27 KKVLIVTDKGLVK---LGLL-DKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGG-GSVIDCAKA 101 (374)
T ss_pred CeEEEEeCcchhh---cccH-HHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 6899998765422 1234 5799999999998776521 11222445555555568999999998 555555443
Q ss_pred ---hhcCcC----------ccccCCCcEEEecCcCCCCcccccce
Q 011290 186 ---LLERED----------WNDAIKVPLGVVPADFLDAGTGNGMI 217 (489)
Q Consensus 186 ---L~~~~~----------~~~~~~~plgiIP~~~~~~GSgN~~a 217 (489)
++.++. ......+|+..||. ++|||--+.
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPT---tagTGsE~t 143 (374)
T cd08189 102 IAARAANPKKSLRKLTGLLKVKKPLPPLFAIPT---TAGTGSEVT 143 (374)
T ss_pred HHHHHhCCCCCHHHHhCccccCCCCCCEEEEEC---CCccccccC
Confidence 233221 00112479999998 556665443
No 95
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=88.00 E-value=3.5 Score=42.24 Aligned_cols=95 Identities=22% Similarity=0.325 Sum_probs=58.1
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~--~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+...+ ...+ +++...|+.+ +++.++. ... .....++++.+...++|.||.+|| |.+-++...
T Consensus 23 ~~~lvv~~~~~~~---~g~~-~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~aKa 96 (332)
T cd08180 23 KRVLIVTDPFMVK---SGML-DKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGG-GSAIDAAKA 96 (332)
T ss_pred CeEEEEeCchhhh---CccH-HHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECC-chHHHHHHH
Confidence 7899998864432 1133 6788899887 7665542 111 233445555555568999999999 566666654
Q ss_pred h---hcCcCccccCCCcEEEecCcCCCCccccc
Q 011290 186 L---LEREDWNDAIKVPLGVVPADFLDAGTGNG 215 (489)
Q Consensus 186 L---~~~~~~~~~~~~plgiIP~~~~~~GSgN~ 215 (489)
+ ..... ....+|+..||. ++|||--
T Consensus 97 ~a~~~~~~~--~~~~~p~i~VPT---tagtgse 124 (332)
T cd08180 97 IIYFAKKLG--KKKKPLFIAIPT---TSGTGSE 124 (332)
T ss_pred HHHHHhCCC--CCCCCCEEEeCC---CCcchHh
Confidence 3 22111 113589999998 3466543
No 96
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=85.73 E-value=4.6 Score=41.95 Aligned_cols=92 Identities=16% Similarity=0.217 Sum_probs=65.9
Q ss_pred HhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC--ChhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011290 101 DFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (489)
Q Consensus 101 ~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~--~~~ha~el~~~~~~~~~d~IV~vGGDGt 178 (489)
+.+..... ++.+|+.-+.. .+++.+++.+.|...|+.+.+.... ..++...+++.+...++|.||-+|| |.
T Consensus 23 ~~~~~~~~-~~~lvv~g~~~-----~~~~~~~~~~~l~~~g~~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGG-Gk 95 (360)
T COG0371 23 EVLLKLGL-SRALVVTGENT-----YAIAGEKVEKSLKDEGLVVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGG-GK 95 (360)
T ss_pred HHHHhccC-CceEEEEChhH-----HHHHHHHHHHHhcccCcceeeeecCccCHHHHHHHHHHhcccCCCEEEEecC-cH
Confidence 33444444 78889887655 4567789999999999854444332 2334455555554467899999998 88
Q ss_pred HHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 179 LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 179 l~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.++..-+..+ ..+|+-.+|.
T Consensus 96 ~iD~aK~~A~~------~~~pfIsvPT 116 (360)
T COG0371 96 TIDTAKAAAYR------LGLPFISVPT 116 (360)
T ss_pred HHHHHHHHHHH------cCCCEEEecC
Confidence 99999888776 4899999999
No 97
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=85.16 E-value=5.6 Score=41.60 Aligned_cols=92 Identities=8% Similarity=0.171 Sum_probs=57.3
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE----------EeCCh-hHHHHHHHHhh---cCCCceEEEE
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ----------ETTQQ-LHAKEIVKVLD---LSKYDGIVCV 173 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~----------~T~~~-~ha~el~~~~~---~~~~d~IV~v 173 (489)
..+|++|+.++.-.+--. . +.+.+...|+.++++++++ .++.. ....++.+.+. .++.|.||++
T Consensus 29 ~~~r~lvVtD~~v~~~~~-~-~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIal 106 (369)
T cd08198 29 ARPKVLVVIDSGVAQANP-Q-LASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAI 106 (369)
T ss_pred CCCeEEEEECcchHHhhh-h-HHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEE
Confidence 347899999987654111 1 2367888999888665433 11221 22334444443 3455699999
Q ss_pred cCCChHHHHHHHhhcCcCccccCCCcEEEecCc
Q 011290 174 SGDGILVEVVNGLLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 174 GGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~ 206 (489)
|| |.+.++.-.+..... ..+|+-.||.+
T Consensus 107 GG-G~v~D~ag~vA~~~~----rGip~I~IPTT 134 (369)
T cd08198 107 GG-GAVLDAVGYAAATAH----RGVRLIRIPTT 134 (369)
T ss_pred CC-hHHHHHHHHHHHHhc----CCCCEEEECCC
Confidence 88 888888766543211 26999999983
No 98
>PLN02834 3-dehydroquinate synthase
Probab=85.04 E-value=5.2 Score=42.78 Aligned_cols=84 Identities=18% Similarity=0.238 Sum_probs=56.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE---Ee-----CChhHHHHHHHHhhcC---CCceEEEEcCCC
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ---ET-----TQQLHAKEIVKVLDLS---KYDGIVCVSGDG 177 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~---~T-----~~~~ha~el~~~~~~~---~~d~IV~vGGDG 177 (489)
.+|++|+.++...+ .|.+.+...|+.+|+++.++ .. .......++++.+... +.|.||++|| |
T Consensus 100 g~rvlIVtD~~v~~-----~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG-G 173 (433)
T PLN02834 100 GKRVLVVTNETVAP-----LYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGG-G 173 (433)
T ss_pred CCEEEEEECccHHH-----HHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECC-h
Confidence 47899999876532 36678999999999876652 11 2333444554444333 3458888887 7
Q ss_pred hHHHHHHHh---hcCcCccccCCCcEEEecC
Q 011290 178 ILVEVVNGL---LEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 178 tl~EVvnGL---~~~~~~~~~~~~plgiIP~ 205 (489)
++.++...+ +.+ .+|+-.||.
T Consensus 174 sv~D~ak~~A~~y~r-------giplI~VPT 197 (433)
T PLN02834 174 VIGDMCGFAAASYQR-------GVNFVQIPT 197 (433)
T ss_pred HHHHHHHHHHHHhcC-------CCCEEEECC
Confidence 888877643 333 689999999
No 99
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=84.21 E-value=4.7 Score=42.45 Aligned_cols=91 Identities=10% Similarity=0.213 Sum_probs=56.0
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE----------EeCCh-hHHHHHHHHhhc---CCCceEEEEc
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ----------ETTQQ-LHAKEIVKVLDL---SKYDGIVCVS 174 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~----------~T~~~-~ha~el~~~~~~---~~~d~IV~vG 174 (489)
.+|++|+.++.--+-. .. +.+.+...|+.++++++++ ..+.. ....++.+.+.. ++.|.||++|
T Consensus 42 ~~r~liVtD~~v~~~~-~~-l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiG 119 (389)
T PRK06203 42 PKKVLVVIDSGVLRAH-PD-LLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIG 119 (389)
T ss_pred CCeEEEEECchHHHhh-hh-HHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeC
Confidence 5789999987654311 11 2368889999888866432 12222 224444444433 4456999998
Q ss_pred CCChHHHHHHHhhcCcCccccCCCcEEEecCc
Q 011290 175 GDGILVEVVNGLLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 175 GDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~ 206 (489)
| |.+-++.-.+.... ...+|+-.||.+
T Consensus 120 G-Gsv~D~ak~iA~~~----~rgip~I~IPTT 146 (389)
T PRK06203 120 G-GAVLDMVGYAAATA----HRGVRLIRIPTT 146 (389)
T ss_pred C-cHHHHHHHHHHHHh----cCCCCEEEEcCC
Confidence 7 78888765553211 025899999983
No 100
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=80.77 E-value=5.7 Score=40.84 Aligned_cols=83 Identities=19% Similarity=0.311 Sum_probs=53.7
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE---eCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~---T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+..- +. +.+++...|+..++ .++. .+. .....++++.+...+.|.||.+|| |++.++...
T Consensus 24 ~~~livt~~~~~----~~-~~~~v~~~l~~~~~--~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~iD~aK~ 95 (337)
T cd08177 24 SRALVLTTPSLA----TK-LAERVASALGDRVA--GTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGG-GSTIDLAKA 95 (337)
T ss_pred CeEEEEcChHHH----HH-HHHHHHHHhccCCc--EEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHH
Confidence 578888764332 22 44688888887643 2321 111 223344555554568999999998 888888877
Q ss_pred hhcCcCccccCCCcEEEecCc
Q 011290 186 LLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~~ 206 (489)
+.... .+|+..||.+
T Consensus 96 ia~~~------~~p~i~IPTt 110 (337)
T cd08177 96 IALRT------GLPIIAIPTT 110 (337)
T ss_pred HHHHh------cCCEEEEcCC
Confidence 65432 6899999984
No 101
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=79.96 E-value=27 Score=30.87 Aligned_cols=76 Identities=18% Similarity=0.071 Sum_probs=49.1
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe------CCh---hHHHHHHHHhhcCCCceEEEEcCCCh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQ---LHAKEIVKVLDLSKYDGIVCVSGDGI 178 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T------~~~---~ha~el~~~~~~~~~d~IV~vGGDGt 178 (489)
....+-++.|.... ... +.....|+..|+++..... +.. .=+.++++.+...++|.||.++||+-
T Consensus 38 ~~~~~r~y~~~~~~-----~~~-~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~D 111 (149)
T cd06167 38 EIVLARAYGNWTSP-----ERQ-RGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSD 111 (149)
T ss_pred eEEEEEEEEecCCc-----hhH-HHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCcc
Confidence 34556677775443 112 3566678888887654432 111 11334444444457999999999999
Q ss_pred HHHHHHHhhcC
Q 011290 179 LVEVVNGLLER 189 (489)
Q Consensus 179 l~EVvnGL~~~ 189 (489)
+..+++.|-++
T Consensus 112 f~~~i~~lr~~ 122 (149)
T cd06167 112 FVPLVERLREL 122 (149)
T ss_pred HHHHHHHHHHc
Confidence 99999999876
No 102
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=79.61 E-value=4.6 Score=43.40 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=68.0
Q ss_pred cEEEEEEcCCCCCccc--cccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHH---H
Q 011290 110 KRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEV---V 183 (489)
Q Consensus 110 kr~lviiNP~sG~~~a--~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EV---v 183 (489)
.+++-|.|=+.|=-.. ..+-.+.+..+...-|- +.-|.+ ..+..++++.+...+.|.++++|||||+.-+ .
T Consensus 120 ~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGT---iLGTSR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ 196 (459)
T PTZ00286 120 KTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGT---ILGSSRGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIY 196 (459)
T ss_pred cEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCc---eeccCCChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHH
Confidence 4677777765553222 22222456666555552 333333 3346678888887889999999999998743 2
Q ss_pred HHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHH
Q 011290 184 NGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAV 237 (489)
Q Consensus 184 nGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~I 237 (489)
..+-++ ..++++--||. ==-|++...= ++.|....++.++.+|
T Consensus 197 ee~~~~-----g~~I~VIGIPK-----TIDNDI~~td-~S~GFdTAv~~~~~aI 239 (459)
T PTZ00286 197 KELRRR-----KLNISVVGIPK-----TIDNDIPIID-ESFGFQTAVEEAQNAI 239 (459)
T ss_pred HHHHHh-----CCCceEEEecc-----ccCCCCCCcc-cCcCchHHHHHHHHHH
Confidence 223223 24689999999 5668887321 2235544444444444
No 103
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=79.20 E-value=4.7 Score=41.40 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=39.9
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 153 ~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.+-.++++.+...+.|.+|++|||||+.- ++-|.+. .+++--||. ==-|++.-
T Consensus 81 ~~~~~~~~~l~~~~Id~LivIGGdgS~~~-a~~L~~~-------gi~vigiPk-----TIDNDl~g 133 (324)
T TIGR02483 81 DGDDKIVANLKELGLDALIAIGGDGTLGI-ARRLADK-------GLPVVGVPK-----TIDNDLEA 133 (324)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHH-HHHHHhc-------CCCEEeecc-----ccCCCCcC
Confidence 44556777777778999999999999864 4455542 589999999 55788864
No 104
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=78.52 E-value=8.7 Score=37.05 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=15.0
Q ss_pred HHhhcCCCceEEEEcCCCh
Q 011290 160 KVLDLSKYDGIVCVSGDGI 178 (489)
Q Consensus 160 ~~~~~~~~d~IV~vGGDGt 178 (489)
.+++.+.||+|++-||-|.
T Consensus 79 ~~v~~~dyDalviPGG~g~ 97 (217)
T PRK11780 79 AEADAEDFDALIVPGGFGA 97 (217)
T ss_pred hHCChhhCCEEEECCCCch
Confidence 3444568999999999885
No 105
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=77.78 E-value=16 Score=41.87 Aligned_cols=104 Identities=17% Similarity=0.214 Sum_probs=61.8
Q ss_pred CcEEEEEEcCCCCCccc--cccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a--~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.-+++-|.|=+.|=-+. .++-.+.+..+...-|-.+---.+....+...+++.+...+.|+++++||||++.-+. .|
T Consensus 419 g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT~R~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~-~L 497 (762)
T cd00764 419 GHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGTKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLL-QL 497 (762)
T ss_pred CCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccccCCCcHHHHHHHHHHHHHcCCCEEEEECChhHHHHHH-HH
Confidence 34677777766654221 2222245666666555422111112234566777788777899999999999987543 34
Q ss_pred hcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 187 LEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.+..+.-....+|+-.||+ ==-|++.-
T Consensus 498 ~~~~~~y~~~~i~vVgIPk-----TIDNDv~g 524 (762)
T cd00764 498 REAREQYEEFCIPMVLIPA-----TVSNNVPG 524 (762)
T ss_pred HHHHhhCCCCCccEEEecc-----cccCCCCC
Confidence 3311111124799999999 66787764
No 106
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=77.61 E-value=17 Score=40.02 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=52.8
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh------hHHHHHHHHhh---cCCCceEEEEcCCChHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ------LHAKEIVKVLD---LSKYDGIVCVSGDGILV 180 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~------~ha~el~~~~~---~~~~d~IV~vGGDGtl~ 180 (489)
.+.++++++.. .. +.+.+...|+.+|+.+.......+ ..+.++.+.+. ..+.|.||++|| |++.
T Consensus 210 ~k~~iV~d~~v-----~~-~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGG-Gsv~ 282 (542)
T PRK14021 210 VKVALIHTQPV-----QR-HSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGG-GAAT 282 (542)
T ss_pred CeEEEEECccH-----HH-HHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcC-hHHH
Confidence 46666666533 11 446888999998886543332332 33333434332 236899999988 8888
Q ss_pred HHHHHhhcCcCccccCCCcEEEecCc
Q 011290 181 EVVNGLLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 181 EVvnGL~~~~~~~~~~~~plgiIP~~ 206 (489)
++.-.+...- ...+|+-.||.+
T Consensus 283 D~AKfvA~~y----~rGi~~i~vPTT 304 (542)
T PRK14021 283 DLAGFVAATW----MRGIRYVNCPTS 304 (542)
T ss_pred HHHHHHHHHH----HcCCCEEEeCCh
Confidence 8876664310 017999999994
No 107
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=76.68 E-value=22 Score=32.71 Aligned_cols=83 Identities=17% Similarity=0.290 Sum_probs=52.5
Q ss_pred HHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhH---HHHHHHHhhcCCCceEEE
Q 011290 96 CEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH---AKEIVKVLDLSKYDGIVC 172 (489)
Q Consensus 96 ~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~h---a~el~~~~~~~~~d~IV~ 172 (489)
.+.|.+.+...++...--+..|-.+ . +.+.+.|...|++. +.+...-+ +.+.++-+-.+++|.+|.
T Consensus 43 ~~~i~~~ls~~G~i~~~R~Y~~a~a-----~----~~l~~~l~~~Gf~p--v~~kG~~Dv~laIDame~~~~~~iD~~vL 111 (160)
T TIGR00288 43 LDEIREILSEYGDIKIGKVLLNQYA-----S----DKLIEAVVNQGFEP--IIVAGDVDVRMAVEAMELIYNPNIDAVAL 111 (160)
T ss_pred HHHHHHHHHhcCCeEEEEEEechhc-----c----HHHHHHHHHCCceE--EEecCcccHHHHHHHHHHhccCCCCEEEE
Confidence 4566677776676544445555433 1 24567788888763 33333222 223333322268999999
Q ss_pred EcCCChHHHHHHHhhcC
Q 011290 173 VSGDGILVEVVNGLLER 189 (489)
Q Consensus 173 vGGDGtl~EVvnGL~~~ 189 (489)
++|||-+..+++.|-++
T Consensus 112 vSgD~DF~~Lv~~lre~ 128 (160)
T TIGR00288 112 VTRDADFLPVINKAKEN 128 (160)
T ss_pred EeccHhHHHHHHHHHHC
Confidence 99999999999999876
No 108
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=76.19 E-value=13 Score=36.20 Aligned_cols=75 Identities=12% Similarity=0.179 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEE
Q 011290 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIV 171 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV 171 (489)
...|...+.+.+. +.+++++| |.++......-|.+..+..|+..|+++..+.+. . +..+.+ .+.|+|+
T Consensus 17 l~~~~~~~~~~~~---~~~~v~fI--PtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~--~---d~~~~l--~~ad~I~ 84 (233)
T PRK05282 17 LEHALPLIAELLA---GRRKAVFI--PYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV--A---DPVAAI--ENAEAIF 84 (233)
T ss_pred HHHHHHHHHHHHc---CCCeEEEE--CCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc--h---hhHHHH--hcCCEEE
Confidence 3445555556654 34555544 555543333345678999999999987655432 2 233333 4678999
Q ss_pred EEcCCCh
Q 011290 172 CVSGDGI 178 (489)
Q Consensus 172 ~vGGDGt 178 (489)
+-||+=+
T Consensus 85 v~GGnt~ 91 (233)
T PRK05282 85 VGGGNTF 91 (233)
T ss_pred ECCccHH
Confidence 9999743
No 109
>PRK06703 flavodoxin; Provisional
Probab=75.20 E-value=11 Score=33.75 Aligned_cols=86 Identities=23% Similarity=0.186 Sum_probs=49.7
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG---GDGtl~EVvnGL 186 (489)
++++|++ .|..|.++++- +.+...|...++++++........ .++.++|.|+++. |+|-+..-+..+
T Consensus 2 mkv~IiY--~S~tGnT~~iA-~~ia~~l~~~g~~v~~~~~~~~~~-------~~l~~~d~viigspt~~~g~~p~~~~~f 71 (151)
T PRK06703 2 AKILIAY--ASMSGNTEDIA-DLIKVSLDAFDHEVVLQEMDGMDA-------EELLAYDGIILGSYTWGDGDLPYEAEDF 71 (151)
T ss_pred CeEEEEE--ECCCchHHHHH-HHHHHHHHhcCCceEEEehhhCCH-------HHHhcCCcEEEEECCCCCCcCcHHHHHH
Confidence 4678888 45566666544 678888999999888775433211 1245788888866 677665433333
Q ss_pred hcCcCccccCCCcEEEecC
Q 011290 187 LEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (489)
+..-........+++++=.
T Consensus 72 ~~~l~~~~l~~k~~~vfg~ 90 (151)
T PRK06703 72 HEDLENIDLSGKKVAVFGS 90 (151)
T ss_pred HHHHhcCCCCCCEEEEEcc
Confidence 3211111112355666644
No 110
>PRK15138 aldehyde reductase; Provisional
Probab=75.19 E-value=21 Score=37.46 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=55.6
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCCh--hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~~--~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+.+=+ ....+ +++...|. ++++.++. +.++ ....+.++.+...+.|.||.+|| |..-++...
T Consensus 30 ~~~livt~~~~~~--~~g~~-~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK~ 103 (387)
T PRK15138 30 ARVLITYGGGSVK--KTGVL-DQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGG-GSVLDGTKF 103 (387)
T ss_pred CeEEEECCCchHH--hcCcH-HHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHH
Confidence 6888886554422 12234 56777785 66665552 1112 23445555555568999999999 444444333
Q ss_pred h---hcCcC------------ccccCCCcEEEecCcCCCCccccccee
Q 011290 186 L---LERED------------WNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 186 L---~~~~~------------~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
+ +..+. ......+|+..||. ++|||--+..
T Consensus 104 ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPT---TaGTGSE~t~ 148 (387)
T PRK15138 104 IAAAANYPENIDPWHILETGGKEIKSAIPMGSVLT---LPATGSESNA 148 (387)
T ss_pred HHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEec---CCccccccCC
Confidence 2 11110 01112479999998 5566654433
No 111
>PLN02564 6-phosphofructokinase
Probab=75.18 E-value=6.4 Score=42.50 Aligned_cols=96 Identities=16% Similarity=0.192 Sum_probs=59.2
Q ss_pred cEEEEEEcCCCCCcc--ccccchHhHHHHHHhCCCcEEEEEeCChh-HHHHHHHHhhcCCCceEEEEcCCChHHHHHH--
Q 011290 110 KRLYIFVNPFGGKKI--ASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVN-- 184 (489)
Q Consensus 110 kr~lviiNP~sG~~~--a~~~~~~~v~p~l~~a~i~~~v~~T~~~~-ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn-- 184 (489)
.+++-|.|=+.|=-. -..+-.+.+..+...-| ++.-|.+.. +..++++.+...+.|.++++|||||+.-+..
T Consensus 120 ~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GG---TiLGTsR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~ 196 (484)
T PLN02564 120 TRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGG---TILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIY 196 (484)
T ss_pred eEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCC---ceeccCCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHH
Confidence 467777765555321 12222245666666555 344444332 4567778887778999999999999875322
Q ss_pred -HhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 185 -GLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 185 -GL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.+.++ ..++++--||. ==-|++..
T Consensus 197 e~~~~~-----g~~i~VIGIPK-----TIDNDI~~ 221 (484)
T PLN02564 197 EEIRRR-----GLKVAVAGIPK-----TIDNDIPV 221 (484)
T ss_pred HHHHHc-----CCCceEEEecc-----cccCCCcC
Confidence 22222 24677888998 55688874
No 112
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=75.14 E-value=11 Score=39.12 Aligned_cols=99 Identities=18% Similarity=0.315 Sum_probs=55.2
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE--EeCCh--hHHHHHHHHhhcCC--CceEEEEcCCChHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQ--LHAKEIVKVLDLSK--YDGIVCVSGDGILVEVV 183 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~--~T~~~--~ha~el~~~~~~~~--~d~IV~vGGDGtl~EVv 183 (489)
+|++|+..+...+ ...+ +++...|+.. .+.++ ...++ ....+.++.+...+ .|.||.+|| |.+.++.
T Consensus 24 ~r~lvVtd~~~~~---~g~~-~~v~~~L~~~--~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGG-GSviD~a 96 (355)
T TIGR03405 24 RRVVVVTFPEARA---LGLA-RRLEALLGGR--LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGG-GSVIDTA 96 (355)
T ss_pred CeEEEEECcchhh---cchH-HHHHHHhccC--cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHH
Confidence 7899998765422 2233 5788888654 33333 11111 23444444443334 999999998 6666665
Q ss_pred HHh---hcCcCc-------------cccCCCcEEEecCcCCCCccccccee
Q 011290 184 NGL---LEREDW-------------NDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 184 nGL---~~~~~~-------------~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
..+ +..++. .....+|+..||. ++|||--+..
T Consensus 97 K~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPT---TagTGSE~t~ 144 (355)
T TIGR03405 97 KVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPT---TAGTGSEVTP 144 (355)
T ss_pred HHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcC---CCcchhhhcC
Confidence 443 222210 0113589999998 5566654443
No 113
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=74.90 E-value=6.5 Score=42.07 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=67.7
Q ss_pred cEEEEEEcCCCCC-----ccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011290 110 KRLYIFVNPFGGK-----KIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (489)
Q Consensus 110 kr~lviiNP~sG~-----~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVv 183 (489)
.+++-|.|=+-|= ++-..+-.+.+..+...-| ++.-|.+ ..+..++++.+...+.|.++++|||||+.-..
T Consensus 113 ~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GG---TiLGTsR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~ 189 (443)
T PRK06830 113 RRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGG---TILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGAS 189 (443)
T ss_pred eEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCC---ccccCCCCchhHHHHHHHHHHcCCCEEEEeCCchHHHHHH
Confidence 4677777765542 2223333356777666655 3334433 33466778888878899999999999986443
Q ss_pred HHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHH
Q 011290 184 NGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAV 237 (489)
Q Consensus 184 nGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~I 237 (489)
. |.+-- .+...++++--||. ==-|++...- ++.|....+..++.+|
T Consensus 190 ~-l~ee~-~~~g~~I~VIGIPK-----TIDNDi~~td-~S~GFdTAv~~a~~aI 235 (443)
T PRK06830 190 A-IAEEI-ERRGLKISVIGIPK-----TIDNDINFIQ-KSFGFETAVEKATEAI 235 (443)
T ss_pred H-HHHHH-HHhCCCceEEEecc-----ccCCCCcCcc-cCCCHHHHHHHHHHHH
Confidence 2 22200 00124689999998 5568886432 2225443344444433
No 114
>PRK06756 flavodoxin; Provisional
Probab=74.21 E-value=11 Score=33.47 Aligned_cols=85 Identities=19% Similarity=0.240 Sum_probs=48.9
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG---GDGtl~EVvnGL 186 (489)
++++||+ .|..|..+++- +.+...|+..|++++++........ .++.++|.|+++. |+|.+.+.+..+
T Consensus 2 mkv~IiY--~S~tGnTe~vA-~~ia~~l~~~g~~v~~~~~~~~~~~------~~~~~~d~vi~gspt~~~g~~p~~~~~f 72 (148)
T PRK06756 2 SKLVMIF--ASMSGNTEEMA-DHIAGVIRETENEIEVIDIMDSPEA------SILEQYDGIILGAYTWGDGDLPDDFLDF 72 (148)
T ss_pred ceEEEEE--ECCCchHHHHH-HHHHHHHhhcCCeEEEeehhccCCH------HHHhcCCeEEEEeCCCCCCCCcHHHHHH
Confidence 5788888 45556666544 5777888888988877654321111 2345789887774 677766544444
Q ss_pred hcCcCccccCCCcEEEe
Q 011290 187 LEREDWNDAIKVPLGVV 203 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiI 203 (489)
+..-........+++++
T Consensus 73 l~~l~~~~l~~k~~~~f 89 (148)
T PRK06756 73 YDAMDSIDLTGKKAAVF 89 (148)
T ss_pred HHHHhcCCCCCCEEEEE
Confidence 33211011224566664
No 115
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=73.67 E-value=4.1 Score=36.84 Aligned_cols=47 Identities=13% Similarity=0.323 Sum_probs=31.2
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGt 178 (489)
|.++++..|+..|++++........++ ++.+.+. ..|+|++.|||=.
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~~~~-~~~~~i~--~ad~I~~~GG~~~ 47 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDRNDA-DILEAIR--EADAIFLGGGDTF 47 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSCGHH-HHHHHHH--HSSEEEE--S-HH
T ss_pred CHHHHHHHHHHCCCEEEEEeccCCChH-HHHHHHH--hCCEEEECCCCHH
Confidence 346788999999999877766665444 5555554 6899999999953
No 116
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=73.10 E-value=31 Score=33.30 Aligned_cols=66 Identities=12% Similarity=0.180 Sum_probs=43.3
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.++..++..|+++.+..+... ....+.+.+...+.|+||+++.+..- ..++.+... .+|+-.+-.
T Consensus 30 ~gi~~~~~~~g~~~~v~~~~~~-~~~~~~~~l~~~~~dgiii~~~~~~~-~~~~~~~~~-------~ipvV~~~~ 95 (275)
T cd06295 30 GGIADALAERGYDLLLSFVSSP-DRDWLARYLASGRADGVILIGQHDQD-PLPERLAET-------GLPFVVWGR 95 (275)
T ss_pred HHHHHHHHHcCCEEEEEeCCch-hHHHHHHHHHhCCCCEEEEeCCCCCh-HHHHHHHhC-------CCCEEEECC
Confidence 3577888888988888766554 33344444544689999999876542 445555433 678777755
No 117
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=72.93 E-value=14 Score=37.78 Aligned_cols=93 Identities=15% Similarity=0.220 Sum_probs=58.6
Q ss_pred cEEEEEEcCCCCCcc--ccccchHhHHHHHHhCCCcEEEEEeC------ChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 110 KRLYIFVNPFGGKKI--ASKIFLDDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 110 kr~lviiNP~sG~~~--a~~~~~~~v~p~l~~a~i~~~v~~T~------~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
-+++-+.|=+.|=-+ -..+-.+.+..+...-|. +.-|. ...+-.++++.+...+.|.++++|||||+.-
T Consensus 31 ~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt---~LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~ 107 (317)
T cd00763 31 LEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGT---FLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMG 107 (317)
T ss_pred CEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCe---eeccCCCCccCCHHHHHHHHHHHHHcCCCEEEEECCchHHHH
Confidence 367777776655322 122222456666555443 22222 2344556777777778999999999999876
Q ss_pred HHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 182 VVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 182 VvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
+. .|.+. .+|+--||. ==-|++.-
T Consensus 108 a~-~L~e~-------~i~vigiPk-----TIDNDi~g 131 (317)
T cd00763 108 AM-RLTEH-------GFPCVGLPG-----TIDNDIPG 131 (317)
T ss_pred HH-HHHHc-------CCCEEEecc-----cccCCCCC
Confidence 53 35442 589999999 66788874
No 118
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=72.21 E-value=11 Score=38.25 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=55.6
Q ss_pred EEEEEEcCCCCCc--cccccchHhHHHHHHhCCCcEEEEEeC------ChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011290 111 RLYIFVNPFGGKK--IASKIFLDDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 111 r~lviiNP~sG~~--~a~~~~~~~v~p~l~~a~i~~~v~~T~------~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EV 182 (489)
+++-+.|=+.|=- +-.++-.+.+..+...-|.- .-|. ...+-..+++.+...+.|.+|++|||||+.-+
T Consensus 31 ~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~---LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a 107 (301)
T TIGR02482 31 EVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTI---LGTARCPEFKTEEGRQKAVENLKKLGIEGLVVIGGDGSYTGA 107 (301)
T ss_pred EEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCce---eccCCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHH
Confidence 5666666555432 11222223455555554432 1222 22344566777777789999999999998654
Q ss_pred HHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 183 VNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 183 vnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
+.|.+. ..+|+--||. =--|++.-
T Consensus 108 -~~L~e~------~~i~vigiPk-----TIDNDl~~ 131 (301)
T TIGR02482 108 -QKLYEE------GGIPVIGLPG-----TIDNDIPG 131 (301)
T ss_pred -HHHHHh------hCCCEEeecc-----cccCCCcC
Confidence 334331 2689999999 66788875
No 119
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=71.28 E-value=22 Score=33.75 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=46.9
Q ss_pred HhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHH-HHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILV-EVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~-EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.++..++..|+++.+..+.. +....+.++++...++|+|+.++.+.... +.+.-+... .+|+-.+-.
T Consensus 19 ~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~~~~~l~~~-------~ip~V~~~~ 88 (267)
T cd01536 19 KGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALTPALKKANAA-------GIPVVTVDS 88 (267)
T ss_pred HHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHHHHHHHHHHC-------CCcEEEecC
Confidence 567788888899988887763 45556777777666899999998775432 355555443 567666544
No 120
>PRK03202 6-phosphofructokinase; Provisional
Probab=70.48 E-value=15 Score=37.70 Aligned_cols=95 Identities=18% Similarity=0.280 Sum_probs=59.0
Q ss_pred EEEEEEcCCCCCccc--cccchHhHHHHHHhCCCcEEEE---EeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 111 RLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQ---ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 111 r~lviiNP~sG~~~a--~~~~~~~v~p~l~~a~i~~~v~---~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+++-|.|=+-|=-+. ..+-.+.+..+....|..+--- ..+.......+++.+...+.|.+|++|||||+.-+ +.
T Consensus 33 ~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a-~~ 111 (320)
T PRK03202 33 EVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGA-KR 111 (320)
T ss_pred eEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccCCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHH-HH
Confidence 566666655553221 2222346666666666322111 11223455677777877789999999999998764 33
Q ss_pred hhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 186 LLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
|.+. .+|+--||. ==-|++.-
T Consensus 112 L~e~-------~i~vigiPk-----TIDNDl~g 132 (320)
T PRK03202 112 LTEH-------GIPVIGLPG-----TIDNDIAG 132 (320)
T ss_pred HHhc-------CCcEEEecc-----cccCCCCC
Confidence 5542 689999999 55687774
No 121
>PRK14071 6-phosphofructokinase; Provisional
Probab=70.25 E-value=11 Score=39.35 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=39.3
Q ss_pred HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 154 ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
...++++.+...+.|.++++|||||+. .++-|.+. ..+|+--||. ==-|++..
T Consensus 95 ~~~~~~~~l~~~~Id~Li~IGGdgS~~-~a~~L~~~------~~i~vIgiPk-----TIDNDl~~ 147 (360)
T PRK14071 95 RSQEIIDGYHSLGLDALIGIGGDGSLA-ILRRLAQQ------GGINLVGIPK-----TIDNDVGA 147 (360)
T ss_pred HHHHHHHHHHHcCCCEEEEECChhHHH-HHHHHHHh------cCCcEEEecc-----cccCCCcC
Confidence 345666777767899999999999985 44555542 2689999998 55688865
No 122
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=70.13 E-value=25 Score=31.93 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=43.9
Q ss_pred chHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHhhcCCCce-EEEEcCCChHHHHHHHhhcC
Q 011290 129 FLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~~~~~~d~-IV~vGGDGtl~EVvnGL~~~ 189 (489)
+.+++...|+..|+.+++.... .+....+++++++..+++. |.+.|+++-|--++-++-..
T Consensus 15 ~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~ 79 (150)
T PF00731_consen 15 IAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTL 79 (150)
T ss_dssp HHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCC
Confidence 3468999999999999987764 5566778888887656664 56678999999999988753
No 123
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=69.53 E-value=24 Score=36.60 Aligned_cols=84 Identities=17% Similarity=0.277 Sum_probs=52.1
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE----eCChhHHHHHHHHhhcCC---CceEEEEcCCChHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE----TTQQLHAKEIVKVLDLSK---YDGIVCVSGDGILVEV 182 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~----T~~~~ha~el~~~~~~~~---~d~IV~vGGDGtl~EV 182 (489)
+|++|+..+.-.+ .+.+.+...|. ++.+.++. ...-..+.++.+.+...+ .|.||++|| |.+.++
T Consensus 20 ~r~lIVtD~~v~~-----l~~~~l~~~L~--~~~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGG-Gsv~D~ 91 (346)
T cd08196 20 ENDVFIVDANVAE-----LYRDRLDLPLD--AAPVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGG-GIIQDV 91 (346)
T ss_pred CeEEEEECccHHH-----HHHHHHHHHhc--CCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHHHH
Confidence 6889998876532 35567777776 34444443 123344555555554434 488888887 777777
Q ss_pred HHHh---hcCcCccccCCCcEEEecCcCC
Q 011290 183 VNGL---LEREDWNDAIKVPLGVVPADFL 208 (489)
Q Consensus 183 vnGL---~~~~~~~~~~~~plgiIP~~~~ 208 (489)
.-.+ +.| .+|+-.||.+++
T Consensus 92 ak~vA~~~~r-------gi~~i~iPTTll 113 (346)
T cd08196 92 TTFVASIYMR-------GVSWSFVPTTLL 113 (346)
T ss_pred HHHHHHHHHc-------CCCeEEecccHH
Confidence 6654 344 568888888655
No 124
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=67.21 E-value=14 Score=37.11 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=42.6
Q ss_pred EEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC----------hhHHHHHHHHhhcCCCceEEEE-cCCChH
Q 011290 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVCV-SGDGIL 179 (489)
Q Consensus 114 viiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~----------~~ha~el~~~~~~~~~d~IV~v-GGDGtl 179 (489)
-|+.|.|+-... +.+ ++....|+..|+++.+-.+-. +..|.++.+.+.....|+|+|+ ||+|+.
T Consensus 2 ~iiapSs~~~~~-~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~ 76 (282)
T cd07025 2 GIVAPSSPIDEE-ERL-ERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGAN 76 (282)
T ss_pred EEEeCCCCCCcH-HHH-HHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHH
Confidence 378898876543 455 578889999998776544322 2335566666665677877765 888863
No 125
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=67.09 E-value=13 Score=38.43 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=38.9
Q ss_pred HHHHHHHHhhcCCCceEEEEcCCChHHHHHH---HhhcCcCccccCCCcEEEecCcCCCCcccccce
Q 011290 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVN---GLLEREDWNDAIKVPLGVVPADFLDAGTGNGMI 217 (489)
Q Consensus 154 ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn---GL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a 217 (489)
.-..+++.+...+.|.+|++|||||+.-+.. .+.++ ...+++--||. =--|++.
T Consensus 80 ~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~-----~~~i~vigiPk-----TIDNDl~ 136 (338)
T cd00363 80 GRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSK-----YQGFNVIGLPG-----TIDNDIK 136 (338)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhc-----CCCccEEEeee-----cccCCCc
Confidence 4456777777778999999999999865422 22222 23699999999 5678876
No 126
>PRK04155 chaperone protein HchA; Provisional
Probab=66.71 E-value=36 Score=34.34 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.2
Q ss_pred cCCCceEEEEcCCChHH
Q 011290 164 LSKYDGIVCVSGDGILV 180 (489)
Q Consensus 164 ~~~~d~IV~vGGDGtl~ 180 (489)
.+.||+|++.||=|.+.
T Consensus 145 ~~dYDaV~iPGG~g~~~ 161 (287)
T PRK04155 145 DSDYAAVFIPGGHGALI 161 (287)
T ss_pred cccccEEEECCCCchHH
Confidence 46899999999988744
No 127
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=66.39 E-value=20 Score=37.88 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=39.5
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 153 ~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.....+++.+...+.|.++++|||||+.-+. -|.+.-. +....+|+--||. ==-|++.-
T Consensus 99 ~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~-~L~~~~~-~~g~~i~vvgIPk-----TIDNDl~~ 157 (403)
T PRK06555 99 NPLKVAAERLAADGVDILHTIGGDDTNTTAA-DLAAYLA-ENGYDLTVVGLPK-----TIDNDVVP 157 (403)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHH-HHHHHHH-HhCCCceEEEeee-----eeeCCCCC
Confidence 3445667777777899999999999987542 2322000 0013689999998 56688863
No 128
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=66.28 E-value=26 Score=37.14 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=69.0
Q ss_pred HHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHh----hc--------
Q 011290 97 EKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL----DL-------- 164 (489)
Q Consensus 97 ~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~----~~-------- 164 (489)
+.|...|.+...-..-.++||+.--.|+ .+..+|+..... ++-|-...+.+.+...+ ..
T Consensus 3 dQL~~il~sd~~lPe~i~Lvn~sd~qgq-------~l~~~l~~~~~p--vv~t~s~advqa~fs~iv~rIQk~Cn~ns~~ 73 (414)
T PF10254_consen 3 DQLNHILISDDQLPENIILVNTSDWQGQ-------FLSDLLQEHMLP--VVCTCSTADVQAAFSAIVSRIQKFCNCNSSP 73 (414)
T ss_pred hhhhhhhccCCCCCceEEEEecCccchh-------HHHHHHhhcCCC--eEecCCHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 4555555443332235677887654332 366778776544 56666777766544433 21
Q ss_pred CCCceEEEEcCCChHHHHHHHhhcC-----cCccccCCCcEEEecCcCCCCcccccceeccc
Q 011290 165 SKYDGIVCVSGDGILVEVVNGLLER-----EDWNDAIKVPLGVVPADFLDAGTGNGMIKSLL 221 (489)
Q Consensus 165 ~~~d~IV~vGGDGtl~EVvnGL~~~-----~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~ 221 (489)
...--|+++|||--++-|+.-.++. +||. .-+.+-+||. |+ |.+|+-|+
T Consensus 74 p~~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl--~~~rFlvIPl-----Gs-~~varyLg 127 (414)
T PF10254_consen 74 PPPVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWL--NYLRFLVIPL-----GS-HPVARYLG 127 (414)
T ss_pred CCceEEEEEccHHHHHHHHHHHHHHhccCCcccc--cceeEEEecC-----CC-CHHHHHHh
Confidence 1344699999999999998765432 4552 3577899999 99 99998774
No 129
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=66.05 E-value=74 Score=30.39 Aligned_cols=94 Identities=12% Similarity=0.124 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC--ChhHHHHHHHHhhcC
Q 011290 88 SEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLS 165 (489)
Q Consensus 88 ~~~~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~--~~~ha~el~~~~~~~ 165 (489)
..+.+....+.+.+. .+.+++.++..+.. .+ .. ..+.++..++.+|+++...... ....+...++++...
T Consensus 118 ~~~~~~~~~~~~~~~----~~~~~i~~v~~~~~-~~--~~-~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~ 189 (298)
T cd06268 118 DAQQAAALADYLAEK----GKVKKVAIIYDDYA-YG--RG-LAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAA 189 (298)
T ss_pred cHHHHHHHHHHHHHh----cCCCEEEEEEcCCc-hh--HH-HHHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHhc
Confidence 344444444443332 24678888876644 22 22 2356778888888765433221 223566667776656
Q ss_pred CCceEEEEcCCChHHHHHHHhhcC
Q 011290 166 KYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 166 ~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
+.|.|++++.......++..+...
T Consensus 190 ~~~~vi~~~~~~~~~~~~~~~~~~ 213 (298)
T cd06268 190 GPDAVFLAGYGGDAALFLKQAREA 213 (298)
T ss_pred CCCEEEEccccchHHHHHHHHHHc
Confidence 778888877667777788877654
No 130
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=65.23 E-value=19 Score=31.38 Aligned_cols=59 Identities=27% Similarity=0.265 Sum_probs=32.0
Q ss_pred HhHHHHHHhCCCcEEEEEeC-----ChhH-----HHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcC
Q 011290 131 DDVKPLLEDANIQFTVQETT-----QQLH-----AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~-----~~~h-----a~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
+.+...|+..|+++...... .++. +.++++.+....+|.+|.++||+-+..+++.|-.+
T Consensus 50 ~~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~~l~~~ 118 (146)
T PF01936_consen 50 KSFQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVRKLRER 118 (146)
T ss_dssp HHHHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHHHHHHH
T ss_pred hhHHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHHHHHHc
Confidence 45567788899866544331 1111 22333333334579999999999999999999865
No 131
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=64.96 E-value=32 Score=34.40 Aligned_cols=91 Identities=11% Similarity=0.194 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCce
Q 011290 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDG 169 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~ 169 (489)
.....+.+.+++++ +..+++.|++||..-.. . ...+.++...+..|+++..+......+....++.+. ++.|.
T Consensus 115 ~~~~~~l~l~~~l~---P~~k~igvl~~~~~~~~--~-~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~-~~~da 187 (294)
T PF04392_consen 115 PPIEKQLELIKKLF---PDAKRIGVLYDPSEPNS--V-AQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALA-EKVDA 187 (294)
T ss_dssp --HHHHHHHHHHHS---TT--EEEEEEETT-HHH--H-HHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHC-TT-SE
T ss_pred cCHHHHHHHHHHhC---CCCCEEEEEecCCCccH--H-HHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhh-ccCCE
Confidence 34556666666665 45689999999986432 2 233678888888999988777788888877777774 56786
Q ss_pred EEEEcCCChHHHHHHHhhc
Q 011290 170 IVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 170 IV~vGGDGtl~EVvnGL~~ 188 (489)
++ +..|+++..-...++.
T Consensus 188 ~~-~~~~~~~~~~~~~i~~ 205 (294)
T PF04392_consen 188 LY-LLPDNLVDSNFEAILQ 205 (294)
T ss_dssp EE-E-S-HHHHHTHHHHHH
T ss_pred EE-EECCcchHhHHHHHHH
Confidence 55 5678888765555443
No 132
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=64.82 E-value=60 Score=37.93 Aligned_cols=73 Identities=18% Similarity=0.333 Sum_probs=48.1
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHH--hCCCcEEEEEe----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLE--DANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~--~a~i~~~v~~T----~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EV 182 (489)
.+|++|+..+..-+ .. +.+++...|+ .+++++.++.- .......++++.+...+.|.||.+|| |.+.++
T Consensus 480 ~~~~lvVtd~~~~~---~g-~~~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGG-GSviD~ 554 (862)
T PRK13805 480 KKRAFIVTDRFMVE---LG-YVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGG-GSPMDA 554 (862)
T ss_pred CCEEEEEECcchhh---cc-hHHHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHH
Confidence 47899998765422 11 3368999998 78887766531 22244556666666678999999998 566665
Q ss_pred HHHh
Q 011290 183 VNGL 186 (489)
Q Consensus 183 vnGL 186 (489)
...+
T Consensus 555 AK~i 558 (862)
T PRK13805 555 AKIM 558 (862)
T ss_pred HHHH
Confidence 5443
No 133
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=63.97 E-value=28 Score=35.92 Aligned_cols=99 Identities=22% Similarity=0.314 Sum_probs=62.2
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-------hhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-------QLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-------~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
-|+.+++-.|.=-+-- .+ +.++..|++.+|+++|+.-.. -.+|.|++++ +++|..|.+|| |..++
T Consensus 70 aKk~llvTDkni~~~~---~~-~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~---~~fDs~vaiGG-GSa~D 141 (465)
T KOG3857|consen 70 AKKTLLVTDKNIAKLG---LV-KVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKK---KNFDSFVAIGG-GSAHD 141 (465)
T ss_pred ccceEEeeCCChhhcc---cH-HHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHh---cccceEEEEcC-cchhh
Confidence 5678888777543321 24 689999999999999875332 3456666665 57999999998 55555
Q ss_pred HHHH---hhcCcCcc---------------ccCCCcEEEecCcCCCCccccccee
Q 011290 182 VVNG---LLEREDWN---------------DAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 182 VvnG---L~~~~~~~---------------~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
-..+ +...+..+ .....||-.||. ++|||.-+-+
T Consensus 142 taKaaaL~Asn~~~eflDyvg~pigk~~~~s~p~lPLiAipT---TaGTgSEtT~ 193 (465)
T KOG3857|consen 142 TAKAAALLASNGEGEFLDYVGPPIGKVKQSSKPLLPLIAIPT---TAGTGSETTR 193 (465)
T ss_pred hHHHHHHhhcCCCccchhccCCcccccccccccccceEeccc---CCCcccccee
Confidence 4433 33322111 112367778887 5677765543
No 134
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=63.50 E-value=62 Score=27.84 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhhhc---CCCcEEE-EEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHh
Q 011290 90 DSKRLWCEKLRDFIDSF---GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVL 162 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~---~rpkr~l-viiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~ 162 (489)
+.++.+.+.+++.+... ++..++. |.++. ..+...|.+..+...+..|+.++.+.. .......+.++++
T Consensus 7 ~va~~i~~~l~~~i~~l~~~~~~P~Laii~vg~----d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~l 82 (117)
T PF00763_consen 7 PVAKEIKEELKEEIEKLKEKGITPKLAIILVGD----DPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKL 82 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT---EEEEEEES------HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEecCC----ChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34555666666655433 3334444 55554 346678988999999999999988765 4455556666666
Q ss_pred hc-CCCceEEE
Q 011290 163 DL-SKYDGIVC 172 (489)
Q Consensus 163 ~~-~~~d~IV~ 172 (489)
.. ...|+|++
T Consensus 83 N~D~~V~GIlv 93 (117)
T PF00763_consen 83 NEDPSVHGILV 93 (117)
T ss_dssp HH-TT-SEEEE
T ss_pred hCCCCCCEEEE
Confidence 43 45678775
No 135
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=62.97 E-value=37 Score=32.68 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=44.2
Q ss_pred HhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcCCCceEEEEcCCChH-HHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~~~d~IV~vGGDGtl-~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++..++..|+.+.+..+ .......++++.+...+.|+||+++.|... .+.+..+... .+|+-.+
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~~~~-------~ipvV~~ 88 (273)
T cd06310 19 AGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEAKDA-------GIPVVLI 88 (273)
T ss_pred HHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHHHHC-------CCCEEEe
Confidence 4677778888988877754 234445566667666789999999877532 4566655443 5676655
No 136
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=61.18 E-value=30 Score=33.63 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=23.6
Q ss_pred hcCCCceEEEEcCCChH---------HHHHHHhhcCcCccccCCCcEEEecC
Q 011290 163 DLSKYDGIVCVSGDGIL---------VEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 163 ~~~~~d~IV~vGGDGtl---------~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.+.||+|++.||=|.. .+++..+.+. .-+++.|=.
T Consensus 91 ~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~-------gK~iaAICh 135 (231)
T cd03147 91 NPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYAN-------GGVVAAVCH 135 (231)
T ss_pred CHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHc-------CCEEEEECh
Confidence 34689999999997753 3444444443 446766655
No 137
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=61.07 E-value=21 Score=36.23 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=43.2
Q ss_pred EEEEcCCCCCccc-cccchHhHHHHHHhCCCcEEEEEeCC----------hhHHHHHHHHhhcCCCceEEEE-cCCChH
Q 011290 113 YIFVNPFGGKKIA-SKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVCV-SGDGIL 179 (489)
Q Consensus 113 lviiNP~sG~~~a-~~~~~~~v~p~l~~a~i~~~v~~T~~----------~~ha~el~~~~~~~~~d~IV~v-GGDGtl 179 (489)
.-|+.|.++-... ...+ +.....|+..|.++.+-.+-+ +..|.++.+.+.....|+|+|+ ||+|..
T Consensus 3 I~ivAPS~~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~ 80 (308)
T cd07062 3 IAVVSPSSGIPGELPHRL-ERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDSN 80 (308)
T ss_pred EEEEeCCCCCcccCHHHH-HHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccCHh
Confidence 3578899885421 3345 467788999998877655432 2335566666665677887775 788863
No 138
>PLN02335 anthranilate synthase
Probab=60.57 E-value=31 Score=33.28 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=46.5
Q ss_pred hhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011290 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 103 ~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EV 182 (489)
+++..+.++++||=|--| |...+...|++.|++++++..... .+.+ +...++|+||+-||-|..++.
T Consensus 12 ~~~~~~~~~ilviD~~ds--------ft~~i~~~L~~~g~~~~v~~~~~~-~~~~----~~~~~~d~iVisgGPg~p~d~ 78 (222)
T PLN02335 12 INSSKQNGPIIVIDNYDS--------FTYNLCQYMGELGCHFEVYRNDEL-TVEE----LKRKNPRGVLISPGPGTPQDS 78 (222)
T ss_pred hcccCccCcEEEEECCCC--------HHHHHHHHHHHCCCcEEEEECCCC-CHHH----HHhcCCCEEEEcCCCCChhhc
Confidence 344566778888866433 345688899999999998865321 1222 223468999999999998874
No 139
>PRK07308 flavodoxin; Validated
Probab=60.56 E-value=33 Score=30.40 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=39.1
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc---CCChHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVE 181 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG---GDGtl~E 181 (489)
.++.|++=-.. |.+.++ .+.+...|...|+.+++........ . ++.++|.|+++. |+|.+.+
T Consensus 2 ~~~~IvY~S~t--GnTe~i-A~~ia~~l~~~g~~~~~~~~~~~~~-----~--~l~~~d~vi~g~~t~g~G~~p~ 66 (146)
T PRK07308 2 ALAKIVYASMT--GNTEEI-ADIVADKLRELGHDVDVDECTTVDA-----S--DFEDADIAIVATYTYGDGELPD 66 (146)
T ss_pred ceEEEEEECCC--chHHHH-HHHHHHHHHhCCCceEEEecccCCH-----h--HhccCCEEEEEeCccCCCCCCH
Confidence 35778874444 445544 3677788888898887765443221 1 235788877766 7886664
No 140
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=60.45 E-value=10 Score=38.14 Aligned_cols=51 Identities=25% Similarity=0.409 Sum_probs=38.5
Q ss_pred HHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 156 ~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.++++.+...+.|.+|++|||||+.-. +.|.+. ..+++-.||. =--|++..
T Consensus 82 ~~~~~~l~~~~Id~Li~IGG~gs~~~a-~~L~~~------~~i~vigiPk-----TIDNDi~g 132 (282)
T PF00365_consen 82 KKIVENLKKLGIDALIVIGGDGSMKGA-HKLSEE------FGIPVIGIPK-----TIDNDIPG 132 (282)
T ss_dssp HHHHHHHHHTTESEEEEEESHHHHHHH-HHHHHH------HHSEEEEEEE-----ETTSSCTT
T ss_pred hhHHHHHHHhCCCEEEEecCCCHHHHH-HHHHhc------CceEEEEEec-----cccCCcCC
Confidence 456677776788999999999998764 445432 2489999999 66788875
No 141
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=60.38 E-value=46 Score=31.95 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=44.0
Q ss_pred HhHHHHHHhCCCcEEEEEeCChh-HHHHHHHHhhcCCCceEEEEcCCC-hHHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~-ha~el~~~~~~~~~d~IV~vGGDG-tl~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++..+++.|+++.+..+.+.- ...+..+.+...++|+||++.+|. ...++++-+.+. .+|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~-------~ipvV~~ 86 (273)
T cd06305 19 AGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDA-------GIPVVAF 86 (273)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHc-------CCCEEEe
Confidence 56778888899988887665322 223455555556899999998875 356777766553 5665444
No 142
>PRK05568 flavodoxin; Provisional
Probab=60.30 E-value=20 Score=31.42 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=42.2
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcC---C-----ChHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG---D-----GILVE 181 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGG---D-----Gtl~E 181 (489)
++++|++-. +.|..+++- +.+..-+...|++++++....... .++.++|.|+.+.. . +.+.+
T Consensus 2 ~~~~IvY~S--~~GnT~~~a-~~i~~~~~~~g~~v~~~~~~~~~~-------~~~~~~d~iilgsp~y~~~~~~~~~~~~ 71 (142)
T PRK05568 2 KKINIIYWS--GTGNTEAMA-NLIAEGAKENGAEVKLLNVSEASV-------DDVKGADVVALGSPAMGDEVLEEGEMEP 71 (142)
T ss_pred CeEEEEEEC--CCchHHHHH-HHHHHHHHHCCCeEEEEECCCCCH-------HHHHhCCEEEEECCccCcccccchhHHH
Confidence 568888854 555666544 577777888899888776544221 13457898887763 2 34555
Q ss_pred HHHHh
Q 011290 182 VVNGL 186 (489)
Q Consensus 182 VvnGL 186 (489)
+++.+
T Consensus 72 f~~~~ 76 (142)
T PRK05568 72 FVESI 76 (142)
T ss_pred HHHHh
Confidence 55544
No 143
>PLN02884 6-phosphofructokinase
Probab=60.13 E-value=19 Score=38.21 Aligned_cols=99 Identities=12% Similarity=0.141 Sum_probs=58.8
Q ss_pred cEEEEEEcCCCCCcccc--c--cchHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIAS--K--IFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~--~--~~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
++++-|.|=+.|=-+.. . .-.+.|..++..-|- +.-|.+. ....++++.+...+.|.+|++|||||+.-+.
T Consensus 85 ~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt---~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~- 160 (411)
T PLN02884 85 KNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGS---LLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGAN- 160 (411)
T ss_pred cEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCc---eeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHH-
Confidence 46777777666543322 1 112457777666553 3333321 1345677777777899999999999986432
Q ss_pred HhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 185 GLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.|.+.- .....++++--||. ==-|++..
T Consensus 161 ~L~~~~-~~~g~~i~vIGIPk-----TIDNDi~~ 188 (411)
T PLN02884 161 AIHNEC-RKRKMKVSVVGVPK-----TIDNDILL 188 (411)
T ss_pred HHHHHH-HHcCCCceEEeccc-----cccCCCcC
Confidence 222200 00123589999998 55688864
No 144
>PRK14072 6-phosphofructokinase; Provisional
Probab=60.11 E-value=29 Score=36.93 Aligned_cols=60 Identities=7% Similarity=0.081 Sum_probs=39.0
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceec
Q 011290 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKS 219 (489)
Q Consensus 153 ~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~s 219 (489)
.+-.++++.+...+.|.+|++|||||+.-+. .|.+--. +...++++--||. ==-||+..+
T Consensus 90 ~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~-~L~e~~~-~~g~~i~vIgIPk-----TIDNDl~gt 149 (416)
T PRK14072 90 AEYERLLEVFKAHDIGYFFYNGGNDSMDTAL-KVSQLAK-KMGYPIRCIGIPK-----TIDNDLPGT 149 (416)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChHHHHHHH-HHHHHHH-HhCCCceEEEeee-----cccCCCCCC
Confidence 3445566666666889999999999986543 2322100 0012589999998 447888854
No 145
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=59.31 E-value=30 Score=39.66 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=59.9
Q ss_pred cEEEEEEcCCCCCccc--cccchHhHHHHHHhCCCcEEEEEeCC---hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 110 kr~lviiNP~sG~~~a--~~~~~~~v~p~l~~a~i~~~v~~T~~---~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
.+++-|.|=+.|=-+. .++-...+..+...-|.. .-|.+ ..+...+++.+...+.|++|++||||++.-+..
T Consensus 420 ~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~---LgtsR~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~ 496 (745)
T TIGR02478 420 HTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSE---LGTNRELPGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQ 496 (745)
T ss_pred CEEEEEecChhhhccCCeecCCHHHHHHHHhcCCcc---cccCCCCchhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHH
Confidence 4677777766553221 112124566666665542 22322 345667777787778999999999999874432
Q ss_pred HhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 185 GLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
|.+..+.-....+|+-.||. ==-|++.-
T Consensus 497 -L~~~~~~~~~~~i~vvgIPk-----TIDNDi~g 524 (745)
T TIGR02478 497 -LEQAREKYPAFRIPMVVIPA-----TISNNVPG 524 (745)
T ss_pred -HHHHHhhCCCCCccEEEecc-----cccCCCCC
Confidence 22211101124699999999 66788873
No 146
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=57.56 E-value=23 Score=40.52 Aligned_cols=101 Identities=10% Similarity=0.142 Sum_probs=58.8
Q ss_pred cEEEEEEcCCCCCccc----cccchHhHHHHHHhCCCcEEEEEeCC------hhHHHHHHHHhhcCCCceEEEEcCCChH
Q 011290 110 KRLYIFVNPFGGKKIA----SKIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (489)
Q Consensus 110 kr~lviiNP~sG~~~a----~~~~~~~v~p~l~~a~i~~~v~~T~~------~~ha~el~~~~~~~~~d~IV~vGGDGtl 179 (489)
-+++.|.|=+.|=-+. .+.-.+.|..++..-|- +.-|.+ ...-...++.+...+.|.+|++||||++
T Consensus 34 ~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT---~LGTsR~~~f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl 110 (762)
T cd00764 34 AKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGT---IIGSARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGSL 110 (762)
T ss_pred CEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCC---cccCCCCCcccCHHHHHHHHHHHHHcCCCEEEEeCCchHH
Confidence 3677777765553222 22222567777777663 122211 1233456677777789999999999998
Q ss_pred HHHH----------HHhhcCc-----CccccCCCcEEEecCcCCCCccccccee
Q 011290 180 VEVV----------NGLLERE-----DWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 180 ~EVv----------nGL~~~~-----~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.-+- ..|.+.. ..+.-..+++--||. ==-|+|+-
T Consensus 111 ~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPk-----TIDNDl~g 159 (762)
T cd00764 111 TGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVG-----SIDNDFCG 159 (762)
T ss_pred HHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEecc-----ceeCCCCC
Confidence 6432 2233321 111223578888998 55788874
No 147
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=57.38 E-value=74 Score=30.22 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=43.5
Q ss_pred HhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++..++..|+.+.+..+++. ....++++.+...++|+||+..++....++++-+... .+|+-.+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~-------~ipvV~~ 85 (266)
T cd06282 19 QGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATSPALDLLDAE-------RVPYVLA 85 (266)
T ss_pred HHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCchHHHHHHhhC-------CCCEEEE
Confidence 5677888888888888776542 2233556666557899999988876434555555443 5675444
No 148
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=56.95 E-value=2.5e+02 Score=30.01 Aligned_cols=68 Identities=21% Similarity=0.374 Sum_probs=44.0
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCC--CcEEEEEeC--ChhHHHHHHHHhh----cCCCceEEEEcCCChH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDAN--IQFTVQETT--QQLHAKEIVKVLD----LSKYDGIVCVSGDGIL 179 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~--i~~~v~~T~--~~~ha~el~~~~~----~~~~d~IV~vGGDGtl 179 (489)
-|+++.||-.|.|- | + ..+...++... +++.++.+. ..+-+.++++.+. ...+|+||++=|=|.+
T Consensus 128 ~p~~i~vits~~~a---a---~-~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~ 200 (432)
T TIGR00237 128 FPKRVGVITSQTGA---A---L-ADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSL 200 (432)
T ss_pred CCCEEEEEeCCccH---H---H-HHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCH
Confidence 37889999877652 2 2 34555565543 456666554 4444667777663 1348999999999988
Q ss_pred HHH
Q 011290 180 VEV 182 (489)
Q Consensus 180 ~EV 182 (489)
-+.
T Consensus 201 eDL 203 (432)
T TIGR00237 201 EDL 203 (432)
T ss_pred HHh
Confidence 753
No 149
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=56.70 E-value=68 Score=32.24 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=56.9
Q ss_pred ecCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe--CChhHHHHHHHH
Q 011290 84 FEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKV 161 (489)
Q Consensus 84 ~~~~~~~~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T--~~~~ha~el~~~ 161 (489)
+.....+....+.+.+.+. + .+|+.+++++.+.-++ . ..+.++..+++.|+++..... ....+...++++
T Consensus 112 ~~~~~~~~~~~~~~~l~~~----g-~~~~~~i~~~~~~~g~--~-~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~ 183 (341)
T cd06341 112 FSGGTPASLTTWGDFAKDQ----G-GTRAVALVTALSAAVS--A-AAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQ 183 (341)
T ss_pred ecCCCcchhHHHHHHHHHc----C-CcEEEEEEeCCcHHHH--H-HHHHHHHHHHHcCCccccccccCCCCCCHHHHHHH
Confidence 3333333444454444332 3 4677777766542222 2 235678888999987543322 222445566677
Q ss_pred hhcCCCceEEEEcCCC-hHHHHHHHhhcC
Q 011290 162 LDLSKYDGIVCVSGDG-ILVEVVNGLLER 189 (489)
Q Consensus 162 ~~~~~~d~IV~vGGDG-tl~EVvnGL~~~ 189 (489)
+...++|+|++. +|+ ....++..+.+.
T Consensus 184 i~~~~pdaV~~~-~~~~~a~~~~~~~~~~ 211 (341)
T cd06341 184 AAAAGADAIITV-LDAAVCASVLKAVRAA 211 (341)
T ss_pred HHhcCCCEEEEe-cChHHHHHHHHHHHHc
Confidence 665689988765 566 777888888776
No 150
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=56.57 E-value=46 Score=29.88 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=33.9
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEE
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~v 173 (489)
.++.++....+.|++++.+.|.++|...+.+.+... ++|+||+-
T Consensus 30 i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~-~~dgiIIN 73 (140)
T PF01220_consen 30 IEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARD-DVDGIIIN 73 (140)
T ss_dssp HHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTC-TTSEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHh-hCCEEEEc
Confidence 345667777778999999999999998888888753 48888754
No 151
>PRK05637 anthranilate synthase component II; Provisional
Probab=56.53 E-value=49 Score=31.60 Aligned_cols=60 Identities=17% Similarity=0.105 Sum_probs=41.6
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EV 182 (489)
++|+++|=|=-| |...+...|+..|..++++..+.. . +++...++|+||+-||-|.+.+.
T Consensus 1 ~~~il~iD~~ds--------f~~nl~~~l~~~g~~~~v~~~~~~--~----~~l~~~~~~~iIlsgGPg~~~d~ 60 (208)
T PRK05637 1 MTHVVLIDNHDS--------FVYNLVDAFAVAGYKCTVFRNTVP--V----EEILAANPDLICLSPGPGHPRDA 60 (208)
T ss_pred CCEEEEEECCcC--------HHHHHHHHHHHCCCcEEEEeCCCC--H----HHHHhcCCCEEEEeCCCCCHHHh
Confidence 356666666222 334688899999998888865422 2 22323478999999999999886
No 152
>PRK09271 flavodoxin; Provisional
Probab=55.55 E-value=23 Score=32.19 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=43.4
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHh
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG---GDGtl~EVvnGL 186 (489)
+++|++=...| .++++- +.+...|...|+++++...... +..++ ..+..++|.|++.. |+|.+.+-+..+
T Consensus 2 kv~IvY~S~tG--nTe~~A-~~ia~~l~~~g~~v~~~~~~~~-~~~~~--~~~~~~~d~vilgt~T~~~G~~p~~~~~f 74 (160)
T PRK09271 2 RILLAYASLSG--NTREVA-REIEERCEEAGHEVDWVETDVQ-TLAEY--PLDPEDYDLYLLGTWTDNAGRTPPEMKRF 74 (160)
T ss_pred eEEEEEEcCCc--hHHHHH-HHHHHHHHhCCCeeEEEecccc-ccccc--ccCcccCCEEEEECcccCCCcCCHHHHHH
Confidence 67888865554 455543 6788889999998876654332 11111 22345789888888 688766533333
No 153
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=55.53 E-value=81 Score=29.94 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=45.9
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.+...+++.|+.+.++.++......++.+++...+.|+||+.+.|-+- +.+.-+... .+|+-.+-.
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~-~~~~~~~~~-------~ipvV~~~~ 85 (266)
T cd06278 19 EALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSGTLSS-ELAEECRRN-------GIPVVLINR 85 (266)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHhhc-------CCCEEEECC
Confidence 4677788889998887776654445566677666789999999887553 345444443 577766644
No 154
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=54.44 E-value=92 Score=31.01 Aligned_cols=88 Identities=8% Similarity=0.085 Sum_probs=51.3
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+.+.+.|++.-.+..-- .+++ +.++..+++.|+.+.+..+.. .....++.+.+...++|+||+.+.+-.-.+.+..+
T Consensus 60 ~~~~Igvv~~~~~~~~~-~~l~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l 137 (328)
T PRK11303 60 RTRSIGLIIPDLENTSY-ARIA-KYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQRL 137 (328)
T ss_pred CCceEEEEeCCCCCchH-HHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCChHHHHHH
Confidence 34456666632222111 2222 456777788898887776643 33344566666667899999988754334555555
Q ss_pred hcCcCccccCCCcEEEec
Q 011290 187 LEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP 204 (489)
... .+|+-.+=
T Consensus 138 ~~~-------~iPvV~v~ 148 (328)
T PRK11303 138 QND-------GLPIIALD 148 (328)
T ss_pred Hhc-------CCCEEEEC
Confidence 432 57776653
No 155
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=53.41 E-value=24 Score=40.44 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=58.0
Q ss_pred cEEEEEEcCCCCCccc----cccchHhHHHHHHhCCCcEEEEEeCC------hhHHHHHHHHhhcCCCceEEEEcCCChH
Q 011290 110 KRLYIFVNPFGGKKIA----SKIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (489)
Q Consensus 110 kr~lviiNP~sG~~~a----~~~~~~~v~p~l~~a~i~~~v~~T~~------~~ha~el~~~~~~~~~d~IV~vGGDGtl 179 (489)
-+++-|.|=+.|=-+. .++-.+.|..++..-|- +.-|.+ ...-..+++.+...+.|.+|++|||||+
T Consensus 31 ~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt---~LGtsR~~~~~~~~~~~~~~~~L~~~~Id~LivIGGdgS~ 107 (745)
T TIGR02478 31 CRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGT---IIGTARCKEFRERPGRLKAARNLIKRGIDNLVVIGGDGSL 107 (745)
T ss_pred CEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCc---eecCCCCCcccCHHHHHHHHHHHHHhCCCEEEEECChhHH
Confidence 3677777766653222 22222467777766652 222211 1122455666766789999999999998
Q ss_pred HHHH----------HHhhcC-----cCccccCCCcEEEecCcCCCCccccccee
Q 011290 180 VEVV----------NGLLER-----EDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 180 ~EVv----------nGL~~~-----~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.-+. .-|.+. ...+....+++--||. ==-|++.-
T Consensus 108 ~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPk-----TIDNDl~g 156 (745)
T TIGR02478 108 TGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVG-----SIDNDMCG 156 (745)
T ss_pred HHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEcc-----ccccCCCC
Confidence 6532 222221 1111223688999998 55788874
No 156
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=53.27 E-value=46 Score=31.02 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=35.9
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EV 182 (489)
|-..+...|...|.+++++.... ..+.+ +...++|+||+.||.|..++.
T Consensus 11 f~~nl~~~l~~~~~~~~v~~~~~-~~~~~----~~~~~~~~iilsgGP~~~~~~ 59 (191)
T PRK06774 11 FTYNLYQYFCELGTEVMVKRNDE-LQLTD----IEQLAPSHLVISPGPCTPNEA 59 (191)
T ss_pred hHHHHHHHHHHCCCcEEEEeCCC-CCHHH----HHhcCCCeEEEcCCCCChHhC
Confidence 55678889999999998887542 22333 222378999999999998765
No 157
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=53.16 E-value=64 Score=32.18 Aligned_cols=78 Identities=13% Similarity=0.066 Sum_probs=56.0
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcE--EEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQF--TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~--~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
..+++.+|.....- + .. ..+.++..++.+|+++ .+.......+...+++++...+.|.|+++++-+....+++.
T Consensus 134 g~~~v~iv~~~~~~-g--~~-~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~~~~~~~~ 209 (343)
T PF13458_consen 134 GAKKVAIVYPDDPY-G--RS-LAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSAGPDVVVLAGDPADAAAFLRQ 209 (343)
T ss_dssp TTSEEEEEEESSHH-H--HH-HHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHTTTSEEEEESTHHHHHHHHHH
T ss_pred CCcEEEEEecCchh-h--hH-HHHHHHHHHhhcCceeccceecccccccchHHHHHHhhcCCCEEEEeccchhHHHHHHH
Confidence 36889888866432 2 22 2357888999999985 23334445666777888877889999999988888899998
Q ss_pred hhcC
Q 011290 186 LLER 189 (489)
Q Consensus 186 L~~~ 189 (489)
+...
T Consensus 210 ~~~~ 213 (343)
T PF13458_consen 210 LRQL 213 (343)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 8765
No 158
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=52.95 E-value=97 Score=30.42 Aligned_cols=87 Identities=9% Similarity=0.070 Sum_probs=50.9
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC-ChhHHHHHHHHhhcCCCceEEEEcCC-ChHHHHHHHhh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLL 187 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~-~~~ha~el~~~~~~~~~d~IV~vGGD-Gtl~EVvnGL~ 187 (489)
+.+.+++ |.....--.++. ..++..+++.|+++.+..+. .+....++.+.+...++|+|++.+.| ..+.+.+.-+.
T Consensus 27 ~~I~vi~-~~~~~~f~~~~~-~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~~ 104 (295)
T PRK10653 27 DTIALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMAN 104 (295)
T ss_pred CeEEEEe-cCCCChHHHHHH-HHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHH
Confidence 3444444 654432223333 46778888899988776554 23334455666655689999887765 23345555444
Q ss_pred cCcCccccCCCcEEEecC
Q 011290 188 EREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 188 ~~~~~~~~~~~plgiIP~ 205 (489)
.. .+|+-.+-.
T Consensus 105 ~~-------~ipvV~~~~ 115 (295)
T PRK10653 105 QA-------NIPVITLDR 115 (295)
T ss_pred HC-------CCCEEEEcc
Confidence 32 567666643
No 159
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=52.58 E-value=1.1e+02 Score=30.56 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=51.1
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++.+.+.+++...+.. --..+ .+-+...+++.|..+.+..+.. .....++.+.+...++|+|++++.+....+.++-
T Consensus 62 ~~~~~Igvv~~~~~~~-~~~~i-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 139 (342)
T PRK10014 62 GQSGVIGLIVRDLSAP-FYAEL-TAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREM 139 (342)
T ss_pred CCCCEEEEEeCCCccc-hHHHH-HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHH
Confidence 3455677776322211 11112 2356677778887766665543 2233455666666789999999887654455555
Q ss_pred hhcCcCccccCCCcEEEe
Q 011290 186 LLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiI 203 (489)
+... .+|+-.+
T Consensus 140 l~~~-------~iPvV~~ 150 (342)
T PRK10014 140 AEEK-------GIPVVFA 150 (342)
T ss_pred Hhhc-------CCCEEEE
Confidence 5443 5676665
No 160
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.35 E-value=81 Score=30.37 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=45.8
Q ss_pred HhHHHHHHhCCCcEEEEEeCC--hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~--~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+-++..+++.|+++.+..+++ .....+.++.+...+.|+||+++.+.. +.+.+.-+.+. .+|+-.+
T Consensus 20 ~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~-------~ipvV~~ 88 (271)
T cd06312 20 NGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVAA-------GIPVISF 88 (271)
T ss_pred HHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHHC-------CCeEEEe
Confidence 467778888899888887764 444556667766678999999998764 45566555443 5666555
No 161
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.18 E-value=61 Score=31.45 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=46.8
Q ss_pred HhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCC-ChHHHHHHHhhcCcCccccCCCcEEEec
Q 011290 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGD-Gtl~EVvnGL~~~~~~~~~~~~plgiIP 204 (489)
+.++..+++.|+++.+..+.+ ...-.+.++++...+.|+|++.+.| +...+.+..+.+. ++|+-.+=
T Consensus 19 ~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~~ 87 (272)
T cd06313 19 QAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIAR-------GIPVIDMG 87 (272)
T ss_pred HHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHC-------CCcEEEeC
Confidence 456677788898888877663 3334456667766789999998876 5567777777654 57776663
No 162
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.61 E-value=85 Score=29.83 Aligned_cols=68 Identities=15% Similarity=0.282 Sum_probs=44.7
Q ss_pred chHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEe
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.+-++..++..|..+.+..+.. ...-.++++.+...++|+|++++.+....++++.+... ++|+-.+
T Consensus 17 ~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~-------~ipvV~~ 85 (268)
T cd06289 17 LAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAES-------GIPVVLV 85 (268)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhc-------CCCEEEE
Confidence 33567777888888776655433 33344566777667899999998776544566665543 5676655
No 163
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=51.48 E-value=59 Score=26.89 Aligned_cols=73 Identities=10% Similarity=0.235 Sum_probs=44.4
Q ss_pred CCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcE
Q 011290 121 GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPL 200 (489)
Q Consensus 121 G~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~pl 200 (489)
|.|-+...+.++++..+++.|+++++..+.... +. .. ..+||.|++.- + +..-.+.+-+.- ....+|+
T Consensus 7 g~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~-~~---~~--~~~~Diil~~P-q--v~~~~~~i~~~~---~~~~~pv 74 (96)
T cd05564 7 SAGMSTSILVKKMKKAAEKRGIDAEIEAVPESE-LE---EY--IDDADVVLLGP-Q--VRYMLDEVKKKA---AEYGIPV 74 (96)
T ss_pred CCCchHHHHHHHHHHHHHHCCCceEEEEecHHH-HH---Hh--cCCCCEEEECh-h--HHHHHHHHHHHh---ccCCCcE
Confidence 455566677889999999999998887665422 21 22 25789665432 2 222223232210 1137999
Q ss_pred EEecC
Q 011290 201 GVVPA 205 (489)
Q Consensus 201 giIP~ 205 (489)
..||.
T Consensus 75 ~~I~~ 79 (96)
T cd05564 75 AVIDM 79 (96)
T ss_pred EEcCh
Confidence 99999
No 164
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=51.43 E-value=18 Score=33.49 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=52.2
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcC--CChHHHHHHHhhc
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG--DGILVEVVNGLLE 188 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGG--DGtl~EVvnGL~~ 188 (489)
+++|+|-...|. .+++ .+.+...|.. |++++++..+.. ...++.+||.||+.++ -|.+...+..++.
T Consensus 2 kilIvY~S~~G~--T~~i-A~~Ia~~l~~-g~~v~~~~~~~~-------~~~~l~~yD~vIlGspi~~G~~~~~~~~fl~ 70 (177)
T PRK11104 2 KTLILYSSRDGQ--TRKI-ASYIASELKE-GIQCDVVNLHRI-------EEPDLSDYDRVVIGASIRYGHFHSALYKFVK 70 (177)
T ss_pred cEEEEEECCCCh--HHHH-HHHHHHHhCC-CCeEEEEEhhhc-------CccCHHHCCEEEEECccccCCcCHHHHHHHH
Confidence 678888665554 4443 3577888887 888877754321 1124567999888776 4666766666665
Q ss_pred CcCccccCCCcEEEecC
Q 011290 189 REDWNDAIKVPLGVVPA 205 (489)
Q Consensus 189 ~~~~~~~~~~plgiIP~ 205 (489)
+.. ......+++++-.
T Consensus 71 ~~~-~~l~~K~v~~F~v 86 (177)
T PRK11104 71 KHA-TQLNQMPSAFFSV 86 (177)
T ss_pred HHH-HHhCCCeEEEEEe
Confidence 421 1123567888777
No 165
>PRK06490 glutamine amidotransferase; Provisional
Probab=51.38 E-value=18 Score=35.30 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=42.2
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~ 180 (489)
-.+|++||.|-.++. ...+...|+..|.+++++.....+. +-. ++++||+||+.||=+.++
T Consensus 6 ~~~~vlvi~h~~~~~-------~g~l~~~l~~~g~~~~v~~~~~~~~---~p~--~l~~~dgvii~Ggp~~~~ 66 (239)
T PRK06490 6 DKRPVLIVLHQERST-------PGRVGQLLQERGYPLDIRRPRLGDP---LPD--TLEDHAGAVIFGGPMSAN 66 (239)
T ss_pred CCceEEEEecCCCCC-------ChHHHHHHHHCCCceEEEeccCCCC---CCC--cccccCEEEEECCCCCCC
Confidence 357899998876542 2467888999999988876432111 111 245799999999988754
No 166
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=51.24 E-value=47 Score=32.02 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=41.8
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
+++.+| |.++.....+-|.++++..|+..|+.+.-..- ...+..++.+.+ .+.|. |.|||=-|++-
T Consensus 33 ~~i~FI--PtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l-~~~~~~~Ie~~l--~~~d~-IyVgGGNTF~L 98 (224)
T COG3340 33 KTIAFI--PTASVDSEDDFYVEKVRNALAKLGLEVSELHL-SKPPLAAIENKL--MKADI-IYVGGGNTFNL 98 (224)
T ss_pred ceEEEE--ecCccccchHHHHHHHHHHHHHcCCeeeeeec-cCCCHHHHHHhh--hhccE-EEECCchHHHH
Confidence 344444 99988888777999999999999997643321 122333444444 24565 45566667764
No 167
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=50.83 E-value=1e+02 Score=30.96 Aligned_cols=77 Identities=13% Similarity=-0.035 Sum_probs=53.2
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T--~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.+++.+|+....- + .... +.++..+++.|+++..... ....+...++.++...+.|.|++.+..+....+++.+
T Consensus 135 ~~~v~ii~~~~~~-g--~~~~-~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~ 210 (340)
T cd06349 135 FKKVAILSVNTDW-G--RTSA-DIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILISYYNDGAPIARQA 210 (340)
T ss_pred CcEEEEEecCChH-h--HHHH-HHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEccccchHHHHHHHH
Confidence 4678887765442 2 2223 5788899999987653221 2244566777888778899999988878888888877
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
...
T Consensus 211 ~~~ 213 (340)
T cd06349 211 RAV 213 (340)
T ss_pred HHc
Confidence 665
No 168
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=50.48 E-value=90 Score=30.03 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=42.5
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEec
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP 204 (489)
+.++..+++.|+++.+..+..+....++.+.+...+.|+|++++.+- .+.+..++.+. ..+|+-++=
T Consensus 21 ~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~--~~~~~~~~~~~-----~~ipvv~~~ 87 (260)
T cd06304 21 EGLEKAEKELGVEVKYVESVEDADYEPNLRQLAAQGYDLIFGVGFGF--MDAVEKVAKEY-----PDVKFAIID 87 (260)
T ss_pred HHHHHHHHhcCceEEEEecCCHHHHHHHHHHHHHcCCCEEEECCcch--hHHHHHHHHHC-----CCCEEEEec
Confidence 45677788888887776665444455677777767899999998772 34343343321 145666553
No 169
>PRK05569 flavodoxin; Provisional
Probab=50.13 E-value=35 Score=29.87 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=36.6
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcC
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGG 175 (489)
++++|++ +|+.|..+++- +.+..-+...|.+++++....... .++.++|.|+++..
T Consensus 2 ~ki~iiY--~S~tGnT~~iA-~~i~~~~~~~g~~v~~~~~~~~~~-------~~~~~~d~iilgsP 57 (141)
T PRK05569 2 KKVSIIY--WSCGGNVEVLA-NTIADGAKEAGAEVTIKHVADAKV-------EDVLEADAVAFGSP 57 (141)
T ss_pred CeEEEEE--ECCCCHHHHHH-HHHHHHHHhCCCeEEEEECCcCCH-------HHHhhCCEEEEECC
Confidence 4677777 44556666554 577778888888887776544221 13457899988873
No 170
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=49.83 E-value=1.3e+02 Score=29.85 Aligned_cols=89 Identities=11% Similarity=0.153 Sum_probs=51.8
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++.+.+.|++.-.... --.. +.+.++..+++.|..+.+..+.. +....+..+.+...+.|+||+.+.+..-.+.+..
T Consensus 58 ~~~~~Igvi~~~~~~~-~~~~-~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 135 (327)
T TIGR02417 58 GRSRTIGLVIPDLENY-SYAR-IAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASCMPPEDAYYQK 135 (327)
T ss_pred CCCceEEEEeCCCCCc-cHHH-HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHH
Confidence 3455677776322211 1122 23467777888898887766643 2233345566655789999999876533455655
Q ss_pred hhcCcCccccCCCcEEEec
Q 011290 186 LLEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiIP 204 (489)
|... .+|+-++=
T Consensus 136 l~~~-------~iPvV~~~ 147 (327)
T TIGR02417 136 LQNE-------GLPVVALD 147 (327)
T ss_pred HHhc-------CCCEEEEc
Confidence 5433 56766553
No 171
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=49.57 E-value=74 Score=33.65 Aligned_cols=69 Identities=9% Similarity=0.003 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHhhh--------hcC---CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHH
Q 011290 88 SEDSKRLWCEKLRDFID--------SFG---RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAK 156 (489)
Q Consensus 88 ~~~~~~~w~~~l~~~~~--------~~~---rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~ 156 (489)
+.++...|.+.+.+... ... ...+++.|.|.++|-||..-. -.+.-.|...|..+-++....++++.
T Consensus 88 t~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta--~nLA~~LA~~G~rVLlIDlDpQ~~lt 165 (405)
T PRK13869 88 TLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTS--AHLAQYLALQGYRVLAVDLDPQASLS 165 (405)
T ss_pred cHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHH--HHHHHHHHhcCCceEEEcCCCCCCHH
Confidence 45677888888865221 111 133799999999999987643 36778899999999999988887766
Q ss_pred HH
Q 011290 157 EI 158 (489)
Q Consensus 157 el 158 (489)
.+
T Consensus 166 ~~ 167 (405)
T PRK13869 166 AL 167 (405)
T ss_pred HH
Confidence 54
No 172
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=49.53 E-value=73 Score=31.06 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=43.0
Q ss_pred CCCcEEEEEEcCCCC----CccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhc----CCCce-EEEEcCCC
Q 011290 107 GRPKRLYIFVNPFGG----KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL----SKYDG-IVCVSGDG 177 (489)
Q Consensus 107 ~rpkr~lviiNP~sG----~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~----~~~d~-IV~vGGDG 177 (489)
.+|+++.+|||-..= ...+...=.+.++.+|+..|+++++..=-...+..+.++++.. ..+|. +++.-|-|
T Consensus 5 ~~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG 84 (241)
T smart00115 5 SKPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHG 84 (241)
T ss_pred CCCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCC
Confidence 467888888886542 1112111236799999999998887765555555666655533 25674 44444444
No 173
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=49.39 E-value=2.5e+02 Score=29.81 Aligned_cols=67 Identities=25% Similarity=0.401 Sum_probs=43.3
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhC--CCcEEEEEeCChhH--HHHHHHHhh---cCCCceEEEEcCCChHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQETTQQLH--AKEIVKVLD---LSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a--~i~~~v~~T~~~~h--a~el~~~~~---~~~~d~IV~vGGDGtl~E 181 (489)
|+++.||--|.| .|.+ .+...+... .+++.++.+.=+|. +.+|++.+. ..++|+||++=|=|.+-+
T Consensus 135 p~~I~viTs~~g---Aa~~----D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eD 207 (438)
T PRK00286 135 PKRIGVITSPTG---AAIR----DILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLED 207 (438)
T ss_pred CCEEEEEeCCcc---HHHH----HHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHH
Confidence 889999987765 3332 344444443 25677776655444 567777653 223799999999998775
Q ss_pred H
Q 011290 182 V 182 (489)
Q Consensus 182 V 182 (489)
.
T Consensus 208 L 208 (438)
T PRK00286 208 L 208 (438)
T ss_pred h
Confidence 4
No 174
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=49.32 E-value=73 Score=30.12 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=36.0
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDG 177 (489)
..+ .+++-..++.. . -+.+.....|+..|++...........-.++.+.+ ...|+|++.|||=
T Consensus 29 ~~~-i~~iptA~~~~--~-~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l--~~ad~I~~~GG~~ 91 (210)
T cd03129 29 GAR-VLFIPTASGDR--D-EYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARL--LEADGIFVGGGNQ 91 (210)
T ss_pred CCe-EEEEeCCCCCh--H-HHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHH--hhCCEEEEcCCcH
Confidence 344 44555555442 2 23357888899999876544432211112344444 4679999999884
No 175
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.10 E-value=99 Score=29.80 Aligned_cols=68 Identities=16% Similarity=0.080 Sum_probs=43.8
Q ss_pred HhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCC-hHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDG-tl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.++..+++.|.++.+..+.+ .....+..+.+...+.|+|++.+.|- .+.+.++.+... .+|+-.+=.
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~~~ 88 (282)
T cd06318 19 EAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKAA-------GVPVVVVDS 88 (282)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHHC-------CCCEEEecC
Confidence 567788888888877665542 22233556666667899999988763 234566665543 567665533
No 176
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=48.83 E-value=1.2e+02 Score=28.29 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=48.6
Q ss_pred chHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.+-++..++..|+++.+..+... ....+.++++...++|+||+.+.+......+.-+... ++|+-.+..
T Consensus 17 ~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~l~~~-------~ip~v~~~~ 87 (264)
T cd01537 17 VLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLARKA-------GIPVVLVDR 87 (264)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchhHHHHhhhc-------CCCEEEecc
Confidence 345677888889998888776542 3455667777667899999999886654444444333 688877766
No 177
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=48.59 E-value=25 Score=33.85 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=14.8
Q ss_pred HHhhcCCCceEEEEcCCCh
Q 011290 160 KVLDLSKYDGIVCVSGDGI 178 (489)
Q Consensus 160 ~~~~~~~~d~IV~vGGDGt 178 (489)
.+++.+.||+|++-||.|.
T Consensus 76 ~ev~~~dyDalviPGG~~~ 94 (213)
T cd03133 76 AKLKAADFDALIFPGGFGA 94 (213)
T ss_pred HHCCHhHCCEEEECCCCch
Confidence 3444567999999999885
No 178
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.47 E-value=96 Score=29.74 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=41.1
Q ss_pred HhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++..+++.|+++.++.+++. ....+..+++...++|+||+.+.|.. ..+.+.-+.+. ++|+-.+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~~~-------~ipvV~~ 86 (277)
T cd06319 19 RGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQA-------KIPVVIA 86 (277)
T ss_pred HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHHHC-------CCCEEEE
Confidence 4667778888888877655432 22334555555578999998887753 34555544433 5676544
No 179
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=48.42 E-value=82 Score=30.83 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=46.9
Q ss_pred HhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.++..+++.|+.+.+..++. +....++++++...++|+|++.+.|.. ..+.+.-+... .+|+-.+=.
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~-------~ipvV~~~~ 88 (288)
T cd01538 19 PNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADA-------GIPVIAYDR 88 (288)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHC-------CCCEEEECC
Confidence 467788888899888887754 333446667766678999999998875 35666655443 567666643
No 180
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=48.33 E-value=1.4e+02 Score=28.33 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=49.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T--~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.+++.+|..... .+ .. ..+-++..++.+|+++..... ........+++++...+.|+|++++.+.....+++.+
T Consensus 136 ~~~v~iv~~~~~-~~--~~-~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 211 (299)
T cd04509 136 WKKVAILYDDDS-YG--RG-LLEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLCGSGEDAATILKQA 211 (299)
T ss_pred CcEEEEEecCch-HH--HH-HHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccchHHHHHHHHH
Confidence 467887776554 22 22 235677888888887643322 1223455667777555678888877668888888887
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
...
T Consensus 212 ~~~ 214 (299)
T cd04509 212 AEA 214 (299)
T ss_pred HHc
Confidence 765
No 181
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=48.06 E-value=84 Score=30.17 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=42.2
Q ss_pred HhHHHHHHhC---CCc--EEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDA---NIQ--FTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a---~i~--~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+-++..+++. |.. +.+..+.+ .....+.++++...+.|+||+.+.|-. +.++++.+.+. .+|+-.+
T Consensus 19 ~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~~~-------~iPvv~~ 91 (272)
T cd06300 19 DEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALNPVIEEACEA-------GIPVVSF 91 (272)
T ss_pred HHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHC-------CCeEEEE
Confidence 3566667777 764 34444442 233445666666679999999998843 45566665543 6776666
Q ss_pred cC
Q 011290 204 PA 205 (489)
Q Consensus 204 P~ 205 (489)
-.
T Consensus 92 ~~ 93 (272)
T cd06300 92 DG 93 (272)
T ss_pred ec
Confidence 44
No 182
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=47.96 E-value=44 Score=32.63 Aligned_cols=52 Identities=8% Similarity=0.109 Sum_probs=42.8
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~ 163 (489)
+++..|+|+++|.||.-... .+.-.|...|-.+.++.+....|..+..+...
T Consensus 1 M~vItf~s~KGGaGKTT~~~--~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~ 52 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAM--ALASELAARGARVALIDADPNQPLAKWAENAQ 52 (231)
T ss_pred CCeEEEecCCCCCcHHHHHH--HHHHHHHHCCCeEEEEeCCCCCcHHHHHHhcc
Confidence 36889999999999976543 57788888999999999999888888866553
No 183
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=47.87 E-value=21 Score=33.30 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=35.0
Q ss_pred ChhHHHHHHHHhhcCCCceEEEEcC-CChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 151 QQLHAKEIVKVLDLSKYDGIVCVSG-DGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 151 ~~~ha~el~~~~~~~~~d~IV~vGG-DGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+...|+++.+.+...++ .+|.-|| .|..-.+.+|..+.. ...+|++|.
T Consensus 17 ~~~~A~~lG~~la~~g~-~lV~GGg~~GlM~a~a~ga~~~g------G~viGi~p~ 65 (178)
T TIGR00730 17 YKELAAELGAYLAGQGW-GLVYGGGRVGLMGAIADAAMENG------GTAVGVNPS 65 (178)
T ss_pred HHHHHHHHHHHHHHCCC-EEEECCChHhHHHHHHHHHHhcC------CeEEEecch
Confidence 44567788888865443 3555566 799999999987753 467999998
No 184
>PTZ00287 6-phosphofructokinase; Provisional
Probab=47.34 E-value=64 Score=39.35 Aligned_cols=85 Identities=13% Similarity=0.166 Sum_probs=48.9
Q ss_pred ccchHhHHHHHHhCCCcE--EEE--EeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEE
Q 011290 127 KIFLDDVKPLLEDANIQF--TVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (489)
Q Consensus 127 ~~~~~~v~p~l~~a~i~~--~v~--~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgi 202 (489)
.+=.+.|..++..-|..+ +-. .......-..+++.+..-+.|++|++|||||+.-.. -|.+.-. ....++.+--
T Consensus 885 ~Lt~~~V~~i~n~GGtiLlgssR~~~f~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~-~LaE~f~-~~gi~i~VIG 962 (1419)
T PTZ00287 885 IIDDDNIAKHVNQGGLELTGNSPEHSLFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAA-LLAEYFL-EKKIPTSVVG 962 (1419)
T ss_pred ECCHHHHhhHHHcCCeeecCCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHH-HHHHHHH-hcCCCccEEE
Confidence 344456777777777544 111 011234455555666656789999999999987542 2222100 0012444777
Q ss_pred ecCcCCCCccccccee
Q 011290 203 VPADFLDAGTGNGMIK 218 (489)
Q Consensus 203 IP~~~~~~GSgN~~a~ 218 (489)
||. ==-|++..
T Consensus 963 VPk-----TIDNDL~~ 973 (1419)
T PTZ00287 963 IPL-----TGSNNLIH 973 (1419)
T ss_pred eCc-----eeeCCCCC
Confidence 888 45688875
No 185
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=47.19 E-value=91 Score=33.23 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC-------------ChhHHHHH
Q 011290 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-------------QQLHAKEI 158 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~-------------~~~ha~el 158 (489)
...|.+.|.+.++. .. +++.|+++|..|.+. ..+.++|+..|+++..+... .+.+..++
T Consensus 146 ~~~Y~~~l~~~i~~-~~-~~lkVvvd~~~G~~~------~~~~~ll~~lG~~v~~i~~~~d~~F~~~~p~p~~~~~l~~l 217 (443)
T cd03089 146 LPDYIDRLLSDIKL-GK-RPLKVVVDAGNGAAG------PIAPQLLEALGCEVIPLFCEPDGTFPNHHPDPTDPENLEDL 217 (443)
T ss_pred HHHHHHHHHHhccc-cc-CCCeEEEECCCCchH------HHHHHHHHHCCCEEEEecCCCCCCCCCCCcCCCCHHHHHHH
Confidence 45677777777642 22 679999999998753 35778899889876444211 12333444
Q ss_pred HHHhhcCCCceEEEEcCCC
Q 011290 159 VKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 159 ~~~~~~~~~d~IV~vGGDG 177 (489)
.+.+...++|..++.=|||
T Consensus 218 ~~~v~~~~adlgia~D~Da 236 (443)
T cd03089 218 IAAVKENGADLGIAFDGDG 236 (443)
T ss_pred HHHHHHcCCCEEEEecCCc
Confidence 4444445677777777777
No 186
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.15 E-value=1.1e+02 Score=30.20 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=45.4
Q ss_pred HhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcC--CCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLS--KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~--~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.++..+++.|+.+.+..++.. ....++++.+... +.|+||+.+.+....++++-+... .+|+-++=.
T Consensus 20 ~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~-------giPvV~~~~ 90 (305)
T cd06324 20 RFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEGA-------GVKLFLVNS 90 (305)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHhC-------CCeEEEEec
Confidence 4577778888888877766532 2234566666666 899999988765455666665553 577766643
No 187
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=46.91 E-value=46 Score=34.97 Aligned_cols=95 Identities=24% Similarity=0.392 Sum_probs=68.3
Q ss_pred HhHHHHHHhCCCc---EEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcC
Q 011290 131 DDVKPLLEDANIQ---FTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADF 207 (489)
Q Consensus 131 ~~v~p~l~~a~i~---~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~ 207 (489)
+-++.-|..++++ +..++++......++++ ++ +-.|.||-=||-|.+..|.+. -++| +|-.
T Consensus 160 ~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~-l~-~yiD~iIPRGg~~Li~~v~~~----------a~vP--Vi~~-- 223 (417)
T COG0014 160 EVIQEALEKAGLPADAVQLIEDTDREEVLELLR-LD-GYIDLVIPRGGAGLIRRVVEN----------ATVP--VIEH-- 223 (417)
T ss_pred HHHHHHHHHcCCCHHHhhhccCCCHHHHHHHHh-hc-CceeEEEcCCcHHHHHHHHhC----------CcCC--EEec--
Confidence 4677778888874 56777777777778777 33 345999999999988887761 1344 4556
Q ss_pred CCCcccccceeccccccCCCCcHHHHHHHHHcCCeeeeeEEE
Q 011290 208 LDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVAT 249 (489)
Q Consensus 208 ~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~lDl~~ 249 (489)
|.||+-.+- ...-|++.|...|+.++++.-++|-
T Consensus 224 ---~~G~CHiyv-----d~~ADld~A~~ii~nAKtqrPs~CN 257 (417)
T COG0014 224 ---GVGNCHIYV-----DESADLDKALKIIVNAKTQRPSVCN 257 (417)
T ss_pred ---CcceEEEEe-----cccCCHHHHHHHHHcccCCCCcccc
Confidence 777765442 4556899999999999988766663
No 188
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=46.77 E-value=68 Score=34.08 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh----------hHHHHHHH
Q 011290 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVK 160 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~----------~ha~el~~ 160 (489)
....|.+.|.+.++... .+++.|++.+..|.+. ..+.++|+..|+++..+..+.. .+..++.+
T Consensus 150 ~~~~Y~~~l~~~~~~~~-~~~lkVvvD~~nG~~~------~~~~~ll~~lg~~v~~in~~~dg~~~~~~~~~~~~~~l~~ 222 (434)
T cd05802 150 ARGRYIEFLKSTFPKDL-LSGLKIVLDCANGAAY------KVAPEVFRELGAEVIVINNAPDGLNINVNCGSTHPESLQK 222 (434)
T ss_pred hHHHHHHHHHHhcCccc-cCCCEEEEECCCchHH------HHHHHHHHHcCCeEEEecCCCCCCCCCCCCCccCHHHHHH
Confidence 34567787777765322 3579999999888653 3467788888988765533211 23334444
Q ss_pred HhhcCCCceEEEEcCCC
Q 011290 161 VLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 161 ~~~~~~~d~IV~vGGDG 177 (489)
.....++|.-++.-|||
T Consensus 223 ~v~~~~adlGia~DgDg 239 (434)
T cd05802 223 AVLENGADLGIAFDGDA 239 (434)
T ss_pred HHHhcCCCEEEEEcCCC
Confidence 44334567777777766
No 189
>PRK05670 anthranilate synthase component II; Provisional
Probab=46.65 E-value=41 Score=31.31 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=35.2
Q ss_pred cchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 128 IFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 128 ~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
.|-..+...|.+.|++++++.-...+ ..++ .. -++|+||+.||-|...+
T Consensus 10 ~f~~~i~~~l~~~g~~~~v~~~~~~~-~~~~-~~---~~~dglIlsgGpg~~~d 58 (189)
T PRK05670 10 SFTYNLVQYLGELGAEVVVYRNDEIT-LEEI-EA---LNPDAIVLSPGPGTPAE 58 (189)
T ss_pred chHHHHHHHHHHCCCcEEEEECCCCC-HHHH-Hh---CCCCEEEEcCCCCChHH
Confidence 36677889999999998888654322 2222 22 24899999999999876
No 190
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=46.48 E-value=84 Score=27.72 Aligned_cols=72 Identities=11% Similarity=-0.047 Sum_probs=49.9
Q ss_pred EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcC
Q 011290 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
.++-|+.+-..+ +-.+-+.-+|+.+|++ |+.+..-....++++.+...+.|.|++++=|++--|.+..+++.
T Consensus 5 v~~a~~g~D~Hd---~g~~iv~~~l~~~Gfe--Vi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~ 76 (132)
T TIGR00640 5 ILVAKMGQDGHD---RGAKVIATAYADLGFD--VDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKE 76 (132)
T ss_pred EEEEeeCCCccH---HHHHHHHHHHHhCCcE--EEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHH
Confidence 455666553333 3346788999999875 55555445566788887778899999999999777666666553
No 191
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=46.47 E-value=31 Score=31.90 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=33.9
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
|...+...|+++|+++.++.-..... ++ . ++.++|+||+.||.|...+
T Consensus 10 ~~~~~~~~l~~~G~~~~~~~~~~~~~--~~-~--~~~~~dgvil~gG~~~~~~ 57 (184)
T cd01743 10 FTYNLVQYLRELGAEVVVVRNDEITL--EE-L--ELLNPDAIVISPGPGHPED 57 (184)
T ss_pred cHHHHHHHHHHcCCceEEEeCCCCCH--HH-H--hhcCCCEEEECCCCCCccc
Confidence 55678889999999988876543221 11 1 3357999999999998653
No 192
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=45.82 E-value=97 Score=28.62 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=40.4
Q ss_pred hHhHHHHHHh--CCCcEEEEEeCChh-HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhh
Q 011290 130 LDDVKPLLED--ANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 130 ~~~v~p~l~~--a~i~~~v~~T~~~~-ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~ 187 (489)
.+.++..+++ .++++.++.+.... ...+.++++...++|+|+..+.+.+...++.-+.
T Consensus 19 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~~~ 79 (269)
T cd01391 19 LAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELAA 79 (269)
T ss_pred HHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 3566677777 77777777665543 4666777776678999999998877665555443
No 193
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=45.77 E-value=1.6e+02 Score=28.02 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=43.3
Q ss_pred HhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+-++..+++.|+.+.+..+.. ...-.++.+.+...+.|+|++.+.+..- +.++-+... ++|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~l~~~-------~ipvV~~ 84 (265)
T cd06299 19 TAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQSA-EQLEDLLKR-------GIPVVFV 84 (265)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCh-HHHHHHHhC-------CCCEEEE
Confidence 467777888898888776643 3333455666666789999999887653 445555543 5676555
No 194
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=45.64 E-value=1.4e+02 Score=27.83 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=45.1
Q ss_pred chHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.+-++..++..|+++.+...... ....+.++.+...++|+||+.+.|.+-.. +.-+... ++|+-.+=.
T Consensus 17 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~-~~~~~~~-------~ipvv~~~~ 86 (264)
T cd06267 17 LLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL-LEELAAL-------GIPVVLVDR 86 (264)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH-HHHHHHc-------CCCEEEecc
Confidence 335677777778888877665432 22445666776678999999999987655 4444433 577655533
No 195
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=45.62 E-value=97 Score=27.79 Aligned_cols=72 Identities=21% Similarity=0.147 Sum_probs=40.8
Q ss_pred EcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCChhHHHHHHHHhhc-CCCceEEEEcCCCh-----HHHHHHHhh
Q 011290 116 VNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDL-SKYDGIVCVSGDGI-----LVEVVNGLL 187 (489)
Q Consensus 116 iNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~~~ha~el~~~~~~-~~~d~IV~vGGDGt-----l~EVvnGL~ 187 (489)
++-..-.|+-.......++.+|++.|+++.... .+..+...+.++++.. .++|.||+.||=|. ..+++..+.
T Consensus 8 ~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~~~ 87 (152)
T cd00886 8 VSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPLL 87 (152)
T ss_pred EcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHHHh
Confidence 444333333333333468889999998765433 3444444444444322 27999999999653 345555443
No 196
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=45.41 E-value=3.1e+02 Score=26.96 Aligned_cols=78 Identities=13% Similarity=0.063 Sum_probs=46.7
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T--~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
..+++.+|..+.. -+ .. ..+.++..+++.|+++..... ....+....+.++...+.|.|+|.+.+...-.+++.
T Consensus 132 g~~~vail~~~~~-~~--~~-~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~pdaIi~~~~~~~~~~~~~~ 207 (312)
T cd06333 132 GVKTVAFIGFSDA-YG--ES-GLKELKALAPKYGIEVVADERYGRTDTSVTAQLLKIRAARPDAVLIWGSGTPAALPAKN 207 (312)
T ss_pred CCCEEEEEecCcH-HH--HH-HHHHHHHHHHHcCCEEEEEEeeCCCCcCHHHHHHHHHhCCCCEEEEecCCcHHHHHHHH
Confidence 3578888866432 22 22 335778889999987643211 111233444444434568999888766666678888
Q ss_pred hhcC
Q 011290 186 LLER 189 (489)
Q Consensus 186 L~~~ 189 (489)
+.+.
T Consensus 208 l~~~ 211 (312)
T cd06333 208 LRER 211 (312)
T ss_pred HHHc
Confidence 7664
No 197
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=45.11 E-value=4.2e+02 Score=28.44 Aligned_cols=154 Identities=23% Similarity=0.352 Sum_probs=82.9
Q ss_pred eeEEEeceeEEEEEcCCCe--EEEecCC--ceeeeee--eeeeEEEE-cCceEEEEEeecCCCcccccCCCCceeEeeEE
Q 011290 11 DRVRVSGRITAMTLTGDGR--LRWTDGH--QRSLTLE--KQVLGFVV-EGSKIRIRAVVDGRDEICCGGRAGSVVRKDFV 83 (489)
Q Consensus 11 ~~~~~~~~~~~~~l~~~~~--~~w~~~~--~~~~~~~--~~vl~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (489)
..|+|.|...-+|.-..|+ ++.+|.. -+|.... ...|.+.. +|..+.|.--...+. .+.+|.
T Consensus 24 ~~V~v~GEISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~~l~f~p~eG~~V~v~G~is~Y~-----------~rG~YQ 92 (440)
T COG1570 24 GQVWVRGEISNFTRPASGHLYFTLKDERAQIRCVMFKGNNRRLKFRPEEGMQVLVRGKISLYE-----------PRGDYQ 92 (440)
T ss_pred CeEEEEEEecCCccCCCccEEEEEccCCceEEEEEEcCcccccCCCccCCCEEEEEEEEEEEc-----------CCCceE
Confidence 5688999888888766665 4444421 2332221 22333332 344444321111111 123344
Q ss_pred ecCCC-----HHHHHHHHHHHHHhhhh-----------c-CCCcEEEEEEcCCCCCccccccchHhHHHHHHhC--CCcE
Q 011290 84 FEPLS-----EDSKRLWCEKLRDFIDS-----------F-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQF 144 (489)
Q Consensus 84 ~~~~~-----~~~~~~w~~~l~~~~~~-----------~-~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a--~i~~ 144 (489)
+...+ .-....=.+.+++.|.. . .-|+++.||-.|.|- | + ..+...+... .+++
T Consensus 93 i~~~~~~p~G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgA---a---i-rDIl~~~~rR~P~~~v 165 (440)
T COG1570 93 IVAESMEPAGLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGA---A---L-RDILHTLSRRFPSVEV 165 (440)
T ss_pred EEEecCCcCChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchH---H---H-HHHHHHHHhhCCCCeE
Confidence 33332 22333334666666642 2 247889999888762 2 3 3444455543 2566
Q ss_pred EEEEeCChh--HHHHHHHHhh----cCCCceEEEEcCCChHHHH
Q 011290 145 TVQETTQQL--HAKEIVKVLD----LSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 145 ~v~~T~~~~--ha~el~~~~~----~~~~d~IV~vGGDGtl~EV 182 (489)
.++.|.=+| -+.+|++.+. ...+|+||++=|=|.+-+.
T Consensus 166 iv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDL 209 (440)
T COG1570 166 IVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDL 209 (440)
T ss_pred EEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHH
Confidence 666664444 4667777663 2459999999999998754
No 198
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=44.89 E-value=1.4e+02 Score=29.61 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=22.0
Q ss_pred CCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 166 KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 166 ~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
..|.+|+.|| +|+.|++- ..+|.-++|.
T Consensus 241 ~aDl~Is~~G-~T~~E~~a-----------~g~P~i~i~~ 268 (279)
T TIGR03590 241 EADLAIGAAG-STSWERCC-----------LGLPSLAICL 268 (279)
T ss_pred HCCEEEECCc-hHHHHHHH-----------cCCCEEEEEe
Confidence 4688999999 99999874 3677777766
No 199
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=44.85 E-value=83 Score=26.40 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=38.8
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCCh------HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI------LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGt------l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.+...+...|++++........-+.++++.++..+.|.||+.....+ +..+.+.++.+. ++|+.++
T Consensus 59 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~------~~pvlvv 131 (132)
T cd01988 59 RQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESA------PCDVAVV 131 (132)
T ss_pred HHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcC------CCCEEEe
Confidence 456666777788776554332233455666665567887776654332 334555555553 5777665
No 200
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=44.71 E-value=1.1e+02 Score=27.55 Aligned_cols=41 Identities=7% Similarity=0.122 Sum_probs=31.7
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEE
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~ 172 (489)
+.++......|++++.+.+.++|...+.+++.. +++|+||+
T Consensus 33 ~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~-~~~dgiiI 73 (146)
T PRK05395 33 ALLEEEAAELGVELEFFQSNHEGELIDRIHEAR-DGADGIII 73 (146)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcc-cCCcEEEE
Confidence 445555566789999999999999888888774 46888774
No 201
>PLN02285 methionyl-tRNA formyltransferase
Probab=44.42 E-value=51 Score=33.98 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=41.1
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE-EeCChhHHHHHHHHhhcCCCceEEEEc
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~-~T~~~~ha~el~~~~~~~~~d~IV~vG 174 (489)
-.-+.|+-||..-.++.+++...-++....++||++.++ ..+...+ .++.+.+...++|.||++|
T Consensus 36 ~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~-~~~~~~l~~~~~Dliv~~~ 101 (334)
T PLN02285 36 FEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGE-EDFLSALRELQPDLCITAA 101 (334)
T ss_pred CeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCC-HHHHHHHHhhCCCEEEhhH
Confidence 345788999976666655555456888888899986543 2222221 1334445445799999886
No 202
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=44.29 E-value=18 Score=33.47 Aligned_cols=49 Identities=27% Similarity=0.449 Sum_probs=35.7
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
|...+...|++.+++++++.-.. ...+... ++.+||+||+.||=|...+
T Consensus 9 ~~~~l~~~l~~~~~~~~v~~~~~--~~~~~~~--~~~~~d~iii~Gg~~~~~d 57 (192)
T PF00117_consen 9 FTHSLVRALRELGIDVEVVRVDS--DFEEPLE--DLDDYDGIIISGGPGSPYD 57 (192)
T ss_dssp THHHHHHHHHHTTEEEEEEETTG--GHHHHHH--HTTTSSEEEEECESSSTTS
T ss_pred HHHHHHHHHHHCCCeEEEEECCC--chhhhhh--hhcCCCEEEECCcCCcccc
Confidence 44678899999998888886443 2222222 4678999999999888775
No 203
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=44.22 E-value=1.1e+02 Score=29.44 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=44.1
Q ss_pred HhHHHHHHhCCCcEEEEEeCCh---hHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETTQQ---LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~---~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.++..+++.|+++.+..+... ....++.+.+...+.|+||+.+.+.. +.+.+..+.+. .+|+-.+-.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~~~~ 90 (275)
T cd06320 19 EGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKKK-------GIPVVNVND 90 (275)
T ss_pred HHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHHC-------CCeEEEECC
Confidence 4577788888988877655332 22335566665568999998877643 45666666543 677666543
No 204
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=44.21 E-value=80 Score=33.78 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC----------hhHHHHHHH
Q 011290 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVK 160 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~----------~~ha~el~~ 160 (489)
....|.+.|.+.++..-..+++-|+++|..|.+. ..+..+|+..|+++..+..+. +.+..++.+
T Consensus 155 ~~~~Y~~~l~~~i~~~~~~~~lkVvvD~~nGa~~------~~~~~ll~~lG~~v~~i~~~~dg~~~~~~~~~~~~e~l~~ 228 (446)
T PRK14324 155 VIGRYIVHIKNSFPKDLTLKGLRIVLDTANGAAY------KVAPTVFSELGADVIVINDEPNGFNINENCGALHPENLAQ 228 (446)
T ss_pred HHHHHHHHHHHhcCCccCCCCCEEEEECCCchHH------HHHHHHHHHcCCeEEEECCCCCCCCCCCCCCCCCHHHHHH
Confidence 3455777776666421123578999999888642 356778898898765542221 113334444
Q ss_pred HhhcCCCceEEEEcCCC
Q 011290 161 VLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 161 ~~~~~~~d~IV~vGGDG 177 (489)
.+...++|.-++.-|||
T Consensus 229 ~v~~~~adlGia~DgDg 245 (446)
T PRK14324 229 EVKRYRADIGFAFDGDA 245 (446)
T ss_pred HHHhCCCCEEEEECCCC
Confidence 44334556555555555
No 205
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=44.11 E-value=1.4e+02 Score=28.49 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=43.2
Q ss_pred HhHHHHHHhCCCcEEEEEeCChh--HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEec
Q 011290 131 DDVKPLLEDANIQFTVQETTQQL--HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~--ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP 204 (489)
+-++..+++.|+++.+..+.... ...++.+.+...+.|+|++.+++....+.++-+... .+|+-.+-
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~-------~ipvv~i~ 87 (270)
T cd01545 19 LGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEA-------GVPYVRIA 87 (270)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhc-------CCCEEEEe
Confidence 46778888899888777655322 233444555557899999998875434666655443 56765553
No 206
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=44.07 E-value=4.6e+02 Score=29.21 Aligned_cols=116 Identities=11% Similarity=0.078 Sum_probs=74.4
Q ss_pred ceeEeeEEecCCCHHHHHHHHHHHHHhhhh----cCCC-cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe-
Q 011290 76 SVVRKDFVFEPLSEDSKRLWCEKLRDFIDS----FGRP-KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET- 149 (489)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~----~~rp-kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T- 149 (489)
.|+-..+++.-.+.+++....+.+.+.+.. .+.+ .++.||.= +..-..+ .+++...|+..|+++++...
T Consensus 372 ~rkmGhV~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~g----s~sd~~~-~~~~~~~l~~~g~~~~~~v~s 446 (577)
T PLN02948 372 QRKMGHITVVGPSAAEVEARLDQLLAEESADPDALPKGTPLVGIIMG----SDSDLPT-MKDAAEILDSFGVPYEVTIVS 446 (577)
T ss_pred CCeeEEEEEecCCHHHHHHHHHHHHhhhccCCCCCCCCCCeEEEEEC----chhhHHH-HHHHHHHHHHcCCCeEEEEEC
Confidence 356667888777766665555544444321 1222 23556653 2222333 46888999999999988664
Q ss_pred --CChhHHHHHHHHhhcCCCce-EEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 150 --TQQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 150 --~~~~ha~el~~~~~~~~~d~-IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
..+.+..++++++...+.++ |++.|+.+-|-=|+.++-. .|+-=+|.
T Consensus 447 ahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~---------~pvi~vp~ 496 (577)
T PLN02948 447 AHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTP---------LPVIGVPV 496 (577)
T ss_pred CccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccC---------CCEEEcCC
Confidence 44666778888887666664 5566889988888887754 46555666
No 207
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.99 E-value=1.3e+02 Score=30.45 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcEE-EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHhhc
Q 011290 89 EDSKRLWCEKLRDFIDSFGRPKRL-YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDL 164 (489)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~~rpkr~-lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~~~ 164 (489)
.+.++...+.+++.+....+..++ .|.++ ...+...|.+.-....++.|++++.+.-. .+.+..+.++++..
T Consensus 9 k~vA~~i~~~l~~~v~~l~~~P~Laii~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 84 (287)
T PRK14173 9 PPAAEAVYAELRARLAKLPFVPHLRVVRLG----EDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNA 84 (287)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcEEEEEeC----CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346777777888877766433344 44444 44566789888899999999998876542 34445566666643
Q ss_pred -CCCceEEEEc---CCChHHHHHHHhhcCcCc
Q 011290 165 -SKYDGIVCVS---GDGILVEVVNGLLEREDW 192 (489)
Q Consensus 165 -~~~d~IV~vG---GDGtl~EVvnGL~~~~~~ 192 (489)
+..|+|++-= ..-.-.++++.+--.+|-
T Consensus 85 D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDV 116 (287)
T PRK14173 85 DPEVDGILVQLPLPPHIDFQRVLEAIDPLKDV 116 (287)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHhccCccccc
Confidence 3567877642 334445666665554443
No 208
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=43.89 E-value=1.2e+02 Score=32.51 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC-------------ChhHHHH
Q 011290 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-------------QQLHAKE 157 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~-------------~~~ha~e 157 (489)
....|.+.|.+.++.. +-+++.|+++|..|.+. ..+.++|+..|+++.....+ .+.+..+
T Consensus 145 ~~~~Y~~~l~~~i~~~-~i~~lkVvvd~~~Ga~~------~~~~~ll~~lg~~vv~~~~~~d~~Fp~~~p~P~~~~~l~~ 217 (445)
T PRK09542 145 VLADYAAFLRSLVDLS-GIRPLKVAVDAGNGMGG------HTVPAVLGGLPITLLPLYFELDGTFPNHEANPLDPANLVD 217 (445)
T ss_pred hHHHHHHHHHHhcccc-cCCCCEEEEECCCCchh------HHHHHHHHhCCCEEEEEecCcCCCCCCCCcCCCCHHHHHH
Confidence 3556777777766421 12478999999998753 34667888888765433211 1233445
Q ss_pred HHHHhhcCCCceEEEEcCCC
Q 011290 158 IVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 158 l~~~~~~~~~d~IV~vGGDG 177 (489)
+.+.+...++|..++.-|||
T Consensus 218 l~~~v~~~~adlGia~DgD~ 237 (445)
T PRK09542 218 LQAFVRETGADIGLAFDGDA 237 (445)
T ss_pred HHHHHHHcCCCEEEEECCCC
Confidence 55545555677777777777
No 209
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=43.81 E-value=77 Score=26.83 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=48.5
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcC
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
++++++.. .|-+..+..++++..+++.|+++++..+.-. ++........+|.|+ +|-+ +.--.+.+-..
T Consensus 2 kkILlvCg----~G~STSlla~k~k~~~~e~gi~~~i~a~~~~----e~~~~~~~~~~DvIl-l~PQ--i~~~~~~i~~~ 70 (104)
T PRK09590 2 KKALIICA----AGMSSSMMAKKTTEYLKEQGKDIEVDAITAT----EGEKAIAAAEYDLYL-VSPQ--TKMYFKQFEEA 70 (104)
T ss_pred cEEEEECC----CchHHHHHHHHHHHHHHHCCCceEEEEecHH----HHHHhhccCCCCEEE-EChH--HHHHHHHHHHH
Confidence 56777654 4445567888999999999999887654432 233333334688555 4333 22222222221
Q ss_pred cCccccCCCcEEEecC
Q 011290 190 EDWNDAIKVPLGVVPA 205 (489)
Q Consensus 190 ~~~~~~~~~plgiIP~ 205 (489)
- ...++|+.+||.
T Consensus 71 ~---~~~~ipv~~I~~ 83 (104)
T PRK09590 71 G---AKVGKPVVQIPP 83 (104)
T ss_pred h---hhcCCCEEEeCH
Confidence 1 013789999999
No 210
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.81 E-value=1.7e+02 Score=27.86 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=42.3
Q ss_pred HhHHHHHHhCCCcEEEEEeCChh-HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~-ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++..++..|+++.+..+.... .-.++.+.+...++|+|+++..|-. ...++-+... ++|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~-~~~~~~~~~~-------~ipvV~i 84 (270)
T cd06296 19 RGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPELT-SAQRAALRRT-------GIPFVVV 84 (270)
T ss_pred HHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCC-hHHHHHHhcC-------CCCEEEE
Confidence 46777788888888777665433 2335566666678999999887744 2445555443 5676554
No 211
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=43.70 E-value=1e+02 Score=32.80 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC------------hhHHHHH
Q 011290 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ------------QLHAKEI 158 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~------------~~ha~el 158 (489)
....|.+.|.+.++... .+++.|++++..|.+. ..+.++|+..|+++..+..+. +.+..++
T Consensus 145 ~~~~Y~~~l~~~~~~~~-~~~lkIvid~~~G~~~------~~~~~~l~~lg~~v~~~~~~~d~~f~~~~p~p~~~~l~~l 217 (439)
T cd03087 145 AIDEYIEAILDKVDIDG-GKGLKVVVDCGNGAGS------LTTPYLLRELGCKVITLNANPDGFFPGRPPEPTPENLSEL 217 (439)
T ss_pred cHHHHHHHHHHhcCccc-CCCCEEEEECCCCchH------HHHHHHHHHcCCEEEEECCcCCCCCCCCCCCCCHHHHHHH
Confidence 35567777766664222 3578999999998763 357788888898776543221 1333444
Q ss_pred HHHhhcCCCceEEEEcCCC
Q 011290 159 VKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 159 ~~~~~~~~~d~IV~vGGDG 177 (489)
.+.+...+.|..++.-|||
T Consensus 218 ~~~v~~~~adlgia~D~Dg 236 (439)
T cd03087 218 MELVRATGADLGIAHDGDA 236 (439)
T ss_pred HHHHHhcCCCEEEEEcCCC
Confidence 4444445677777777776
No 212
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.51 E-value=1.6e+02 Score=28.12 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=43.3
Q ss_pred hHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 130 LDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
.+-++..+++.|+++.+..+.. .....++++.+...+.|+|++.+.|.. ..+.+..+..+ ++|+-.+
T Consensus 19 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~-------~iPvV~~ 87 (275)
T cd06317 19 NKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQA-------GIPVVIT 87 (275)
T ss_pred HHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHHC-------CCcEEEe
Confidence 3567778888998887776542 222334556665568999999887743 35666655443 5665544
No 213
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=43.45 E-value=1.8e+02 Score=27.67 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=37.3
Q ss_pred HhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
+.+...++..|+.+.+..+++ +....+.++.+...+.|+|++++.+.. -.++..|..
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~l~~ 76 (268)
T cd06273 19 QAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDHS-PALLDLLAR 76 (268)
T ss_pred HHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHHh
Confidence 567777888888877765543 233445666776668999999987654 344554433
No 214
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=43.34 E-value=55 Score=30.48 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=37.8
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGt 178 (489)
+|++||=|=-+ |-..+...|+++|.+++++..... .. .. ++.+|+||+.||-|.
T Consensus 2 ~~iliid~~ds--------f~~~i~~~l~~~g~~~~v~~~~~~-~~----~~--l~~~d~iIi~gGp~~ 55 (190)
T PRK06895 2 TKLLIINNHDS--------FTFNLVDLIRKLGVPMQVVNVEDL-DL----DE--VENFSHILISPGPDV 55 (190)
T ss_pred cEEEEEeCCCc--------hHHHHHHHHHHcCCcEEEEECCcc-Ch----hH--hccCCEEEECCCCCC
Confidence 57888877433 444588999999999888764321 11 12 246999999999994
No 215
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=43.27 E-value=35 Score=31.33 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=22.2
Q ss_pred CCCceEEEEcCCChH--------HHHHHHhhcCcCccccCCCcEEEecC
Q 011290 165 SKYDGIVCVSGDGIL--------VEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 165 ~~~d~IV~vGGDGtl--------~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
..||.|+++||.+.. .+.+..++. ...+|+-|-.
T Consensus 75 ~~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~-------~~k~i~~ic~ 116 (180)
T cd03169 75 DDYDALVIPGGRAPEYLRLDEKVLAIVRHFAE-------ANKPVAAICH 116 (180)
T ss_pred hHCCEEEEcCCCChhhhccCHHHHHHHHHHHH-------cCCEEEEECc
Confidence 368999999997743 222333332 2568888888
No 216
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=43.26 E-value=67 Score=33.31 Aligned_cols=98 Identities=19% Similarity=0.210 Sum_probs=56.6
Q ss_pred CcEEEEEEcCCCCCccc--cccchHhHHHHHHhCCCcE-E--EEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQF-T--VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a--~~~~~~~v~p~l~~a~i~~-~--v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVv 183 (489)
--.++-|+|=..|=-.. .++=...+..++...|... + ..+.+........++.+...+.|.+|++||||+..-..
T Consensus 32 g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~ 111 (347)
T COG0205 32 GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAA 111 (347)
T ss_pred CCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEECCCChHHHHH
Confidence 34566666665554322 2222235666666665421 1 11112222333556667667899999999999976432
Q ss_pred HHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 184 NGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 184 nGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
-|.+. ..+++-=||. ==-||+..
T Consensus 112 -~Lae~------~~i~vVGvPk-----TIDNDi~~ 134 (347)
T COG0205 112 -LLAEE------GGIPVVGVPK-----TIDNDISG 134 (347)
T ss_pred -HHHHh------cCCcEEecCC-----CccCCCcc
Confidence 23333 2488888898 55788884
No 217
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=43.14 E-value=1.3e+02 Score=29.88 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=41.9
Q ss_pred HhHHHHHHh--CCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLED--ANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~--a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++..++. .++.+.+..+.+ +....++++.+...+.|+||+++.|.. +.++++.+... .+|+-.+
T Consensus 19 ~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~-------giPvV~~ 88 (303)
T cd01539 19 KNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQK-------NIPVIFF 88 (303)
T ss_pred HHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHHC-------CCCEEEe
Confidence 456777777 666666655542 122234556666678999999988864 46677766543 5676655
No 218
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=43.05 E-value=1.2e+02 Score=31.13 Aligned_cols=78 Identities=18% Similarity=0.155 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEE
Q 011290 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIV 171 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV 171 (489)
..++..+-...+......+.+.|+++..+|++.-. +. ++++.+++++|.++-++.....+-++- +...+.|..|
T Consensus 215 ~~~~l~rR~~~I~ka~~A~~vGIlvgTl~~q~~~~-~~-~~l~~ll~~~gkk~y~i~~~~in~~kL----~nf~eiD~fV 288 (332)
T TIGR00322 215 AKQFVKVRALAISKARKGKKFGVVLSSKGGQGRLR-LA-KNLKKNLEEAGKTVLIILLSNVSPAKL----LMFDQIDVFV 288 (332)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEecCccCCCHH-HH-HHHHHHHHHcCCcEEEEEeCCCCHHHH----hCCCCcCEEE
Confidence 33443333333445555678999999999998744 44 689999999999988877777665431 2334577766
Q ss_pred EEcC
Q 011290 172 CVSG 175 (489)
Q Consensus 172 ~vGG 175 (489)
.+|=
T Consensus 289 ~~aC 292 (332)
T TIGR00322 289 QVAC 292 (332)
T ss_pred EecC
Confidence 5553
No 219
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=43.05 E-value=1.1e+02 Score=33.00 Aligned_cols=81 Identities=9% Similarity=0.023 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC----------hhHHHHHHH
Q 011290 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVK 160 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~----------~~ha~el~~ 160 (489)
....|.+.|.+.++..-+.+++.|++++..|.+. ..+.++|+..|+++.....+. +.+..++.+
T Consensus 168 ~~~~Y~~~l~~~id~~i~~~~~kVvvD~~nG~~~------~~~~~ll~~LG~~v~~l~~~~dg~~~~~~~~~~~l~~l~~ 241 (465)
T PRK14317 168 LLDDYRDALLESLPDRVNLQGVKIVLDLAWGAAV------ACAPEVFKALGAEVICLHDQPDGDRINVNCGSTHLEPLQA 241 (465)
T ss_pred hHHHHHHHHHHhcCcccccCCCEEEEECCCchHH------HHHHHHHHHcCCeEEEEecccCCCCCCCCCchHhHHHHHH
Confidence 4556777777666421133578999999888653 357788898898776543321 123334444
Q ss_pred HhhcCCCceEEEEcCCC
Q 011290 161 VLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 161 ~~~~~~~d~IV~vGGDG 177 (489)
.+...++|.-++.-|||
T Consensus 242 ~v~~~~adlGia~DgDg 258 (465)
T PRK14317 242 AVLEHGADMGFAFDGDA 258 (465)
T ss_pred HHHhcCCCEEEEECCCC
Confidence 33334566666666665
No 220
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.87 E-value=2e+02 Score=28.95 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhhhc----CCCcEEE-EEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHH
Q 011290 89 EDSKRLWCEKLRDFIDSF----GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVK 160 (489)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~----~rpkr~l-viiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~ 160 (489)
.+.++.+.+.+++.+... ++..++. |.+ |...+...|.+.-...+++.|++++.+.- -.+.+..++++
T Consensus 9 k~~a~~i~~~~~~~i~~~~~~~~~~p~L~~i~v----g~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~ 84 (283)
T PRK14192 9 KALAKQIEEELSVRVEALKAKTGRTPILATILV----GDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIE 84 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEe----CCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 345667777777776543 2333444 444 44456678888889999999999877654 23455666777
Q ss_pred HhhcC-CCceEEE
Q 011290 161 VLDLS-KYDGIVC 172 (489)
Q Consensus 161 ~~~~~-~~d~IV~ 172 (489)
++..+ ++++|.+
T Consensus 85 ~Ln~d~~v~Gi~V 97 (283)
T PRK14192 85 ELNANPDVHGILL 97 (283)
T ss_pred HHhCCCCCCEEEE
Confidence 77544 5676654
No 221
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=42.66 E-value=2.1e+02 Score=28.70 Aligned_cols=88 Identities=13% Similarity=0.049 Sum_probs=57.2
Q ss_pred HHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC----hhHHHHHHHHhhcCCCceEEE
Q 011290 97 EKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----QLHAKEIVKVLDLSKYDGIVC 172 (489)
Q Consensus 97 ~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~----~~ha~el~~~~~~~~~d~IV~ 172 (489)
..+.+.+.. ...+++.+|+.... -++. . .+.++..+++.|+++...+.-. ..+...+++++...+.|.|++
T Consensus 124 ~a~~~~~~~-~~~~~v~ii~~~~~-~g~~--~-~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi~ 198 (350)
T cd06366 124 PAIAALLKK-FGWRRVATIYEDDD-YGSG--G-LPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVV 198 (350)
T ss_pred HHHHHHHHH-CCCcEEEEEEEcCc-ccch--h-HHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEEE
Confidence 334344433 24578887775443 1221 2 2578888999998875544322 245667777776667899999
Q ss_pred EcCCChHHHHHHHhhcC
Q 011290 173 VSGDGILVEVVNGLLER 189 (489)
Q Consensus 173 vGGDGtl~EVvnGL~~~ 189 (489)
++.......++..+.+.
T Consensus 199 ~~~~~~~~~~~~~a~~~ 215 (350)
T cd06366 199 HFSPDLARRVFCEAYKL 215 (350)
T ss_pred ECChHHHHHHHHHHHHc
Confidence 99888888888877665
No 222
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=42.17 E-value=1e+02 Score=32.86 Aligned_cols=81 Identities=11% Similarity=0.043 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhhhc-CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh-----------hHHHHH
Q 011290 91 SKRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-----------LHAKEI 158 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~-~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-----------~ha~el 158 (489)
....|.+.|.+.++.. -+.+++.|+++|..|.+. ..+..+|+..|+++..+..+.. .+..++
T Consensus 147 ~~~~Y~~~l~~~i~~~~i~~~~lkIvvd~~~G~~~------~~~~~ll~~lG~~v~~i~~~~d~~~~~~~~~~~~~l~~l 220 (441)
T cd05805 147 FVEYYIRGLLRALDTSGLKKSGLKVVIDYAYGVAG------IVLPGLLSRLGCDVVILNARLDEDAPRTDTERQRSLDRL 220 (441)
T ss_pred HHHHHHHHHHHHhCHHHHhhcCCeEEEECCCchHH------HHHHHHHHHcCCEEEEEecccCCccCCCCccchhHHHHH
Confidence 3455777776655321 123578999999988753 3467788988988765433222 122233
Q ss_pred HHHhhcCCCceEEEEcCCC
Q 011290 159 VKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 159 ~~~~~~~~~d~IV~vGGDG 177 (489)
.+.+...++|..++.-|||
T Consensus 221 ~~~v~~~~adlgia~DgDa 239 (441)
T cd05805 221 GRIVKALGADFGVIIDPNG 239 (441)
T ss_pred HHHHHhCCCCEEEEEcCCC
Confidence 3333345677777777776
No 223
>CHL00101 trpG anthranilate synthase component 2
Probab=42.16 E-value=78 Score=29.55 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=34.3
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
|-..+...|++.|+++.++..... .+ ..+....+|+||+.||.|.+.+
T Consensus 11 ft~~l~~~l~~~g~~~~v~~~~~~-~~----~~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 11 FTYNLVQSLGELNSDVLVCRNDEI-DL----SKIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCC-CH----HHHhhCCCCEEEECCCCCChHH
Confidence 445688889999999888765432 12 2233347999999999999876
No 224
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=42.12 E-value=65 Score=31.77 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=47.1
Q ss_pred HHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCC-cEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011290 98 KLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (489)
Q Consensus 98 ~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i-~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGD 176 (489)
-|++.....+-++ .++.|-|.++.-.+ .+-.....+|+..|. ++.+..+....+|..--......+.++|...|||
T Consensus 40 iL~~f~~r~g~~~-A~i~I~paas~ep~--~iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGD 116 (293)
T COG4242 40 ILREFGGRAGGEK-AYIVIIPAASREPR--AIGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGD 116 (293)
T ss_pred HHHHhccCCCCCc-eEEEEEecCccChh--hhccchhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCc
Confidence 3444433334444 47778888876542 333455558888887 4677767666665432222223578999999999
Q ss_pred C
Q 011290 177 G 177 (489)
Q Consensus 177 G 177 (489)
=
T Consensus 117 Q 117 (293)
T COG4242 117 Q 117 (293)
T ss_pred c
Confidence 4
No 225
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=41.87 E-value=54 Score=28.65 Aligned_cols=66 Identities=17% Similarity=0.128 Sum_probs=35.9
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh------hH---HHHHHHHhhcCCCceEEEEcCCChHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ------LH---AKEIVKVLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~------~h---a~el~~~~~~~~~d~IV~vGGDGtl~ 180 (489)
+|+.|++.|.. .... + ..+...|..++++++++-.+.. +- +..-..+.+...||.|++.||.+...
T Consensus 2 ~~v~ill~~g~---~~~e-~-~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~ 76 (142)
T cd03132 2 RKVGILVADGV---DAAE-L-SALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAF 76 (142)
T ss_pred CEEEEEEcCCc---CHHH-H-HHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHH
Confidence 46777776633 1222 2 2466778888887776543221 00 00001111223589999999988643
No 226
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=41.80 E-value=1.7e+02 Score=27.00 Aligned_cols=88 Identities=18% Similarity=0.256 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcC----
Q 011290 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS---- 165 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~---- 165 (489)
++...|.+.+++.. ..++++|+=|-. |+.+-. -.++++.+-+..|+++-.+.+..++...++.+-+...
T Consensus 62 ~~~~~~~~~l~~~~----~~~~v~IvSNsa-Gs~~d~--~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~~~~~~~~ 134 (168)
T PF09419_consen 62 PEYAEWLNELKKQF----GKDRVLIVSNSA-GSSDDP--DGERAEALEKALGIPVLRHRAKKPGCFREILKYFKCQKVVT 134 (168)
T ss_pred HHHHHHHHHHHHHC----CCCeEEEEECCC-CcccCc--cHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHHhhccCCC
Confidence 45677777776553 234788888865 444321 2256777777788887777777887777777665432
Q ss_pred CCceEEEEcCCChHHHHHHH
Q 011290 166 KYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 166 ~~d~IV~vGGDGtl~EVvnG 185 (489)
.++-++++ ||=.+-+|+-|
T Consensus 135 ~p~eiavI-GDrl~TDVl~g 153 (168)
T PF09419_consen 135 SPSEIAVI-GDRLFTDVLMG 153 (168)
T ss_pred CchhEEEE-cchHHHHHHHh
Confidence 34445444 69888888765
No 227
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=41.74 E-value=2.9e+02 Score=27.75 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=50.0
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T--~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
...+++.+++..... ++. +.+.++..++..|+++.-... ....+...++.++...+.|.|++.+..+-...++.
T Consensus 142 ~~~~~va~l~~~~~~-g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~ 217 (344)
T cd06345 142 HGFKTAAIVAEDAAW-GKG---IDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGFSGNVGVLFTQ 217 (344)
T ss_pred CCCceEEEEecCchh-hhH---HHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHhcCCCEEEEeecCchHHHHHH
Confidence 346788877654432 322 235788889888987543221 22345566777777778998887776655666776
Q ss_pred HhhcC
Q 011290 185 GLLER 189 (489)
Q Consensus 185 GL~~~ 189 (489)
.+...
T Consensus 218 ~~~~~ 222 (344)
T cd06345 218 QWAEQ 222 (344)
T ss_pred HHHHc
Confidence 66654
No 228
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=41.57 E-value=1.4e+02 Score=28.75 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=33.7
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGD 176 (489)
+|++|+..|-+- ....+...|+.+|+++.++..... .++++|+||+.||-
T Consensus 1 ~~v~Vl~~~G~n-------~~~~~~~al~~~G~~~~~i~~~~~----------~l~~~d~lilpGG~ 50 (227)
T TIGR01737 1 MKVAVIRFPGTN-------CDRDTVYALRLLGVDAEIVWYEDG----------SLPDYDGVVLPGGF 50 (227)
T ss_pred CeEEEEeCCCcC-------cHHHHHHHHHHCCCeEEEEecCCC----------CCCCCCEEEECCCC
Confidence 368899988542 112455678889998777643321 14579999999985
No 229
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=41.37 E-value=36 Score=31.06 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=36.1
Q ss_pred ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 151 QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 151 ~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+...|+++.+.+...++ .||.-|+.|..-.+.++.++.. ...+|++|.
T Consensus 16 ~~~~A~~lg~~La~~g~-~lv~Gg~~GlM~a~a~ga~~~g------g~viGVlp~ 63 (159)
T TIGR00725 16 LYEIAYRLGKELAKKGH-ILINGGRTGVMEAVSKGAREAG------GLVVGILPD 63 (159)
T ss_pred HHHHHHHHHHHHHHCCC-EEEcCCchhHHHHHHHHHHHCC------CeEEEECCh
Confidence 34457788888876666 5666677888888888887763 567999998
No 230
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=41.15 E-value=1.1e+02 Score=28.86 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.0
Q ss_pred hcCCCceEEEEcCCChHHHHHHHhh
Q 011290 163 DLSKYDGIVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 163 ~~~~~d~IV~vGGDGtl~EVvnGL~ 187 (489)
++.++|.||++-+|..+|+.+-...
T Consensus 67 ~l~~adlViaaT~d~elN~~i~~~a 91 (202)
T PRK06718 67 DIVDAFLVIAATNDPRVNEQVKEDL 91 (202)
T ss_pred hcCCceEEEEcCCCHHHHHHHHHHH
Confidence 3567899999999999999887665
No 231
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=41.02 E-value=1.8e+02 Score=29.82 Aligned_cols=102 Identities=11% Similarity=0.045 Sum_probs=60.1
Q ss_pred eEEecCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC----hhHHH
Q 011290 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----QLHAK 156 (489)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~----~~ha~ 156 (489)
.+.|+....+ ......+-+++...+ .+++.|+.+-..+-+.. ..+.++..++..|+++.....-. ..+..
T Consensus 112 ~~~fr~~~~~--~~~~~a~~~~l~~~~-~~~v~ii~~~~~~~g~~---~~~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~ 185 (389)
T cd06352 112 PTLTRTLPPA--RKLGEAVLALLRWFN-WHVAVVVYSDDSENCFF---TLEALEAALREFNLTVSHVVFMEDNSGAEDLL 185 (389)
T ss_pred CceeecCCcH--HHHHHHHHHHHHHcC-ceEEEEEEecCCccHHH---HHHHHHHHHHhcCCeEEEEEEecCCccchhHH
Confidence 4566554322 123344444444333 56788877766522222 12567778888898765433212 24455
Q ss_pred HHHHHhhcCCCceEEEEcCCChHHHHHHHhhcC
Q 011290 157 EIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 157 el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
.+++++...+ |+|+.++.......++..+.+.
T Consensus 186 ~~l~~i~~~~-~vii~~~~~~~~~~~l~q~~~~ 217 (389)
T cd06352 186 EILQDIKRRS-RIIIMCGSSEDVRELLLAAHDL 217 (389)
T ss_pred HHHHHhhhcc-eEEEEECCHHHHHHHHHHHHHc
Confidence 6667776556 8888888877788888777664
No 232
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=40.53 E-value=93 Score=30.62 Aligned_cols=45 Identities=16% Similarity=0.320 Sum_probs=30.6
Q ss_pred hHhHHHHHHhCCCc-EEEEEeCChhHH--HHHHHHhhcCCCceEEEEcCC
Q 011290 130 LDDVKPLLEDANIQ-FTVQETTQQLHA--KEIVKVLDLSKYDGIVCVSGD 176 (489)
Q Consensus 130 ~~~v~p~l~~a~i~-~~v~~T~~~~ha--~el~~~~~~~~~d~IV~vGGD 176 (489)
.+.....|+..|++ +++........| .++.+.+ .+.|+|++.|||
T Consensus 45 ~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l--~~ad~I~~~GGn 92 (250)
T TIGR02069 45 GERYITIFSRLGVKEVKILDVREREDASDENAIALL--SNATGIFFTGGD 92 (250)
T ss_pred HHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHH--hhCCEEEEeCCC
Confidence 35788899999984 666655443333 2344444 478999999999
No 233
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=40.20 E-value=1.4e+02 Score=28.48 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=42.0
Q ss_pred HhHHHHHHh-CCCcEEEEEeC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEec
Q 011290 131 DDVKPLLED-ANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 131 ~~v~p~l~~-a~i~~~v~~T~-~~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiIP 204 (489)
+-++..+++ .++.+.+..+. ......+..+.+...+.|+||+.+.|.. ..+++.-+... ++|+-.+-
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~~-------~iPvv~~~ 88 (272)
T cd06301 19 NAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANAA-------GIPLVYVN 88 (272)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHHC-------CCeEEEec
Confidence 356667777 77777666553 2233345556655568999999988854 34666665554 67766553
No 234
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=40.19 E-value=58 Score=28.63 Aligned_cols=70 Identities=10% Similarity=0.159 Sum_probs=40.6
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEE-EEeCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHh
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV-QETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v-~~T~~~~ha~el~~~~~~~~~d~IV~vG---GDGtl~EVvnGL 186 (489)
+++|++=... |.++++- +.++..+...++++++ +.... .... ..+..+||.|++.. |+|.+.+-+..+
T Consensus 2 ~i~IiY~S~t--GnTe~iA-~~ia~~l~~~g~~v~~~~~~~~---~~~~--~~~~~~~d~iilgs~t~~~g~~p~~~~~f 73 (140)
T TIGR01754 2 RILLAYLSLS--GNTEEVA-FMIQDYLQKDGHEVDILHRIGT---LADA--PLDPENYDLVFLGTWTWERGRTPDEMKDF 73 (140)
T ss_pred eEEEEEECCC--ChHHHHH-HHHHHHHhhCCeeEEecccccc---cccC--cCChhhCCEEEEEcCeeCCCcCCHHHHHH
Confidence 6788885544 4556543 6788888888887652 21110 0000 12345689888877 688766544444
Q ss_pred hc
Q 011290 187 LE 188 (489)
Q Consensus 187 ~~ 188 (489)
+.
T Consensus 74 l~ 75 (140)
T TIGR01754 74 IA 75 (140)
T ss_pred HH
Confidence 43
No 235
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=40.04 E-value=1.3e+02 Score=28.58 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=42.0
Q ss_pred HhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++..+++.|+.+.+..+++ .....+..+++...++|+|++++-+.. ..+.+..+... ++|+-.+
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~~-------~ipvv~~ 86 (268)
T cd06323 19 DGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEA-------GIPVFTI 86 (268)
T ss_pred HHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHC-------CCcEEEE
Confidence 567788888888887766543 233445666666678999998765433 23555555443 5676555
No 236
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=40.01 E-value=59 Score=33.04 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=38.2
Q ss_pred EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC----------ChhHHHHHHHHh--hcCCCceEEEE-cCCChH
Q 011290 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----------QQLHAKEIVKVL--DLSKYDGIVCV-SGDGIL 179 (489)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~----------~~~ha~el~~~~--~~~~~d~IV~v-GGDGtl 179 (489)
.-||.|.|+.. ....+ +.....|+..|.++.+-.+- .+..|.++.+.+ ... .|+|+|+ ||+|+.
T Consensus 4 I~viAPSs~~~-~~~~~-~~~i~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dp-i~aI~~~rGGyg~~ 80 (305)
T PRK11253 4 FHLIAPSGYPI-DQAAA-LRGVQRLTDAGHQVENVEVIARRYQRFAGTDGERLADLNSLADLTTP-NTIVLAVRGGYGAS 80 (305)
T ss_pred EEEEeCCCCCC-CHHHH-HHHHHHHHhCCCEEeeccccccccCccCCCHHHHHHHHHHHHhcCCC-ccEEEEecccCCHh
Confidence 45789998753 23335 46677888889876554321 122344555444 323 7777765 788863
No 237
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=39.83 E-value=70 Score=35.34 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=59.5
Q ss_pred CCcEEEEEEcCCCCCc--cccccchHhHHHHHHhCCCcE---EEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011290 108 RPKRLYIFVNPFGGKK--IASKIFLDDVKPLLEDANIQF---TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 108 rpkr~lviiNP~sG~~--~a~~~~~~~v~p~l~~a~i~~---~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EV 182 (489)
..-+++-|.|=..|=- +-..+-.+.+..+...-|.++ .-..-+...+-..+.+.+..-+.|++|++||||++.-+
T Consensus 103 ~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd~LGs~R~k~~~~e~~~~i~~~l~~~~Id~LviIGGddS~~~A 182 (550)
T cd00765 103 KGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFDMICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSNTNA 182 (550)
T ss_pred CCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChhhhcCcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHH
Confidence 3457888887555432 222232345666666655421 00011234455556666665678999999999988644
Q ss_pred HHHhhcCcCccccCCCcEEEecCcCCCCcccccceec
Q 011290 183 VNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKS 219 (489)
Q Consensus 183 vnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~s 219 (489)
.. |.+.-. +...++++--||. ==-|++...
T Consensus 183 ~~-Lae~~~-~~g~~i~VIGVPK-----TIDNDl~~t 212 (550)
T cd00765 183 AL-LAENFR-SKGLKTRVIGVPK-----TIDGDLKNK 212 (550)
T ss_pred HH-HHHHHH-hcCCCceEEEEee-----eecCCCCCC
Confidence 32 222000 0123688888998 556888864
No 238
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=39.74 E-value=1.1e+02 Score=32.77 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC----------hhHHHHHHHH
Q 011290 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKV 161 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~----------~~ha~el~~~ 161 (489)
...|.+.|.+.++..-+.+++-|++.+..|.+. ..+.++|+..|+++..+..+. +.+-.++.+.
T Consensus 157 ~~~Y~~~l~~~id~~i~~~~lkVvvD~~~G~~~------~~~~~ll~~lG~~v~~i~~~~dg~~~~~~~~~~~l~~l~~~ 230 (448)
T PRK14315 157 HGRYIEFAKRTLPRDLRLDGLRVVVDCANGAAY------KVAPEALWELGAEVITIGVEPNGFNINEECGSTHPEALAKK 230 (448)
T ss_pred HHHHHHHHHHhcccccccCCCEEEEECCCchHH------HHHHHHHHHcCCeEEEeccCCCCCCCCCCCCCCCHHHHHHH
Confidence 455777777766522234578999999888652 356788898898765443210 1122233333
Q ss_pred hhcCCCceEEEEcCCC
Q 011290 162 LDLSKYDGIVCVSGDG 177 (489)
Q Consensus 162 ~~~~~~d~IV~vGGDG 177 (489)
+...++|.-++.-|||
T Consensus 231 v~~~~adlGia~DgDg 246 (448)
T PRK14315 231 VREVRADIGIALDGDA 246 (448)
T ss_pred HHHcCCCEEEEEcCCC
Confidence 3334556666666665
No 239
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=39.63 E-value=92 Score=27.40 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=24.9
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ 151 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~ 151 (489)
|+++|.=-..-.+...++ .+.+...++..+++++++....
T Consensus 2 kilii~gS~r~~~~t~~l-~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKL-AEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp EEEEEESSSSTTSHHHHH-HHHHHHHHHHTTEEEEEEECTT
T ss_pred EEEEEECcCCCCCHHHHH-HHHHHHHHHHcCCEEEEEeccc
Confidence 455554322233444444 4688999998899998886553
No 240
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=39.56 E-value=1.2e+02 Score=32.41 Aligned_cols=51 Identities=8% Similarity=0.024 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE
Q 011290 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~ 147 (489)
....|.+.|.+.+...-+.+++.|++++..|.+. ..+..+|+..|+++..+
T Consensus 152 ~~~~Y~~~l~~~i~~~~~~~~lkVvvD~~~G~~~------~~~~~ll~~lg~~v~~i 202 (443)
T TIGR01455 152 AVGRYIEFLKSTLPRGLTLSGLKVVLDCANGAAY------KVAPHVFRELGAEVIAI 202 (443)
T ss_pred HHHHHHHHHHHHhhcccccCCCEEEEECCCchHH------HHHHHHHHHcCCEEEEE
Confidence 3456777777776521233579999999998742 24567888888876544
No 241
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=39.45 E-value=93 Score=28.13 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=32.2
Q ss_pred hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEE
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~ 172 (489)
++.++......|++++.+.|.+++...+.+++.. +++|+||+
T Consensus 32 ~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~-~~~dgiII 73 (146)
T PRK13015 32 EALCRAAAEALGLEVEFRQSNHEGELIDWIHEAR-GDVAGIVI 73 (146)
T ss_pred HHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhh-hcCCEEEE
Confidence 3456666666799999999999999888888763 46787764
No 242
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.19 E-value=1.9e+02 Score=28.04 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=42.1
Q ss_pred HhHHHHHHhCCCcEEEEEeC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~-~~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.+...+++.|..+.+..+. ....-.++.+.+...++|+||+.+.|.. ..+.+.-+... .+|+-.+
T Consensus 20 ~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~~-------~iPvV~~ 87 (280)
T cd06315 20 EGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELELAQKA-------GIPVVGW 87 (280)
T ss_pred HHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHC-------CCCEEEe
Confidence 46677788888776665554 2333345667776788999999988743 23444444332 5776666
No 243
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=39.18 E-value=3.1e+02 Score=25.13 Aligned_cols=65 Identities=15% Similarity=0.231 Sum_probs=43.0
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
..+++.++-.+.--.+ ...+..+| |+++..+.-....++...++++...++|+|| |+|+..+.++
T Consensus 76 ~~~~Iavv~~~~~~~~------~~~~~~ll---~~~i~~~~~~~~~e~~~~i~~~~~~G~~viV---Gg~~~~~~A~ 140 (176)
T PF06506_consen 76 YGPKIAVVGYPNIIPG------LESIEELL---GVDIKIYPYDSEEEIEAAIKQAKAEGVDVIV---GGGVVCRLAR 140 (176)
T ss_dssp CTSEEEEEEESS-SCC------HHHHHHHH---T-EEEEEEESSHHHHHHHHHHHHHTT--EEE---ESHHHHHHHH
T ss_pred cCCcEEEEecccccHH------HHHHHHHh---CCceEEEEECCHHHHHHHHHHHHHcCCcEEE---CCHHHHHHHH
Confidence 3467777766554322 24677777 5688888888899999999999888888766 4556666654
No 244
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=39.16 E-value=1.7e+02 Score=28.81 Aligned_cols=85 Identities=16% Similarity=0.258 Sum_probs=59.6
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCc
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~ 190 (489)
.+.||+...+..--+. +. +-++..+++.|..+-+..|.+..+..+.++.+...+.|+||+++-... .+-+..+...
T Consensus 3 ~IGvivp~~~npff~~-ii-~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~-~~~l~~~~~~- 78 (279)
T PF00532_consen 3 TIGVIVPDISNPFFAE-II-RGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSEND-DEELRRLIKS- 78 (279)
T ss_dssp EEEEEESSSTSHHHHH-HH-HHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCT-CHHHHHHHHT-
T ss_pred EEEEEECCCCCcHHHH-HH-HHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCC-hHHHHHHHHc-
Confidence 4556665554332222 33 467888899999988888887777767778887789999999977766 5666666654
Q ss_pred CccccCCCcEEEecC
Q 011290 191 DWNDAIKVPLGVVPA 205 (489)
Q Consensus 191 ~~~~~~~~plgiIP~ 205 (489)
.+|+-++=.
T Consensus 79 ------~iPvV~~~~ 87 (279)
T PF00532_consen 79 ------GIPVVLIDR 87 (279)
T ss_dssp ------TSEEEEESS
T ss_pred ------CCCEEEEEe
Confidence 577666655
No 245
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.01 E-value=2.1e+02 Score=29.04 Aligned_cols=100 Identities=13% Similarity=0.128 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE---eCChhHHHHHHHH
Q 011290 90 DSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKV 161 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~-rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~---T~~~~ha~el~~~ 161 (489)
+.++...+.+++.+... + +|+=..|.+++ ..+...|.+.-....++.|+.++.+. +..+.+..+.+++
T Consensus 9 ~~a~~i~~~i~~~v~~l~~~~g~~p~La~i~vg~----~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~ 84 (296)
T PRK14188 9 AFAADVRATVAAEVARLKAAHGVTPGLAVVLVGE----DPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIAR 84 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCC----ChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45666677777766542 2 34333455544 44666888888899999999988773 3445556666676
Q ss_pred hhc-CCCceEEEE---cCCChHHHHHHHhhcCcCcc
Q 011290 162 LDL-SKYDGIVCV---SGDGILVEVVNGLLEREDWN 193 (489)
Q Consensus 162 ~~~-~~~d~IV~v---GGDGtl~EVvnGL~~~~~~~ 193 (489)
+.. ...|+|++- -..-.-.++++.+--..|-+
T Consensus 85 lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVD 120 (296)
T PRK14188 85 LNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVD 120 (296)
T ss_pred HhCCCCCcEEEEeCCCCCCCCHHHHHhccCcccccc
Confidence 643 356788774 23344456677665555433
No 246
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=38.93 E-value=40 Score=37.12 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=59.0
Q ss_pred CCcEEEEEEcCCCCCcc--ccccchHhHHHHHHhCCCc-EEEEE--eCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011290 108 RPKRLYIFVNPFGGKKI--ASKIFLDDVKPLLEDANIQ-FTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~--a~~~~~~~v~p~l~~a~i~-~~v~~--T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EV 182 (489)
+-.+++-|.|=..|=-+ -..+-.+.+..+...-|.. +---. -....+-..+++.+..-+.|++|++||||++.-+
T Consensus 98 ~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A 177 (539)
T TIGR02477 98 PNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNA 177 (539)
T ss_pred CCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHH
Confidence 34577778776665322 2233334577777666642 10000 0123444556666666678999999999998654
Q ss_pred H--HHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 183 V--NGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 183 v--nGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
. ...+.+. ..++++--||. ==-|++..
T Consensus 178 ~~Lae~~~~~----g~~i~VIGIPk-----TIDNDl~~ 206 (539)
T TIGR02477 178 ALLAEYFAKH----GLKTQVIGVPK-----TIDGDLKN 206 (539)
T ss_pred HHHHHHHHhc----CCCceEEEEee-----eecCCCCC
Confidence 3 2111111 23688888998 44688874
No 247
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.90 E-value=2.6e+02 Score=28.26 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhhhhc---CCCcEE-EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHH
Q 011290 89 EDSKRLWCEKLRDFIDSF---GRPKRL-YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKV 161 (489)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~---~rpkr~-lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~ 161 (489)
.+.++.+.+.+++.+... ++..++ .|.++ ...+...|.+.-....++.|++++.+.-. .+.+..+.+++
T Consensus 9 k~va~~i~~~lk~~i~~l~~~g~~p~Laii~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~ 84 (285)
T PRK14189 9 NALSKQLRAEAAQRAAALTARGHQPGLAVILVG----DNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDE 84 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeC----CCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345677777777776543 333344 45554 44467789888899999999999887633 34556666666
Q ss_pred hhc-CCCceEEEE---cCCChHHHHHHHhhcCcC
Q 011290 162 LDL-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (489)
Q Consensus 162 ~~~-~~~d~IV~v---GGDGtl~EVvnGL~~~~~ 191 (489)
+.. +..|+|++- -..-.-.++++.+--.+|
T Consensus 85 lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KD 118 (285)
T PRK14189 85 LNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKD 118 (285)
T ss_pred HcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccC
Confidence 643 356777764 223333456665554444
No 248
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=38.59 E-value=2e+02 Score=26.35 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=49.0
Q ss_pred chHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcCCCceE-EEEcCCChHHHHHHHhhcCcCccccCCCcEEEec
Q 011290 129 FLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGI-VCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~~~d~I-V~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP 204 (489)
..+++...|+..|+++++... ..+.+..++++++...+.+.| .+.|+.+-|-=|+.++-. .|+--+|
T Consensus 13 ~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~---------~PVIgvP 83 (156)
T TIGR01162 13 TMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTP---------LPVIGVP 83 (156)
T ss_pred HHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccC---------CCEEEec
Confidence 346788899999999988764 345667788888876667754 455778877777777654 5666667
Q ss_pred C
Q 011290 205 A 205 (489)
Q Consensus 205 ~ 205 (489)
.
T Consensus 84 ~ 84 (156)
T TIGR01162 84 V 84 (156)
T ss_pred C
Confidence 6
No 249
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=38.37 E-value=51 Score=30.33 Aligned_cols=85 Identities=20% Similarity=0.320 Sum_probs=59.0
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcC--CChHHHHHHHhh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG--DGILVEVVNGLL 187 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGG--DGtl~EVvnGL~ 187 (489)
+|.||++--.-|+ ..++- +.+..-|.+.|++++++.... +.++++++||.||+..- -|-+|+.++.++
T Consensus 1 Mk~LIlYstr~Gq--T~kIA-~~iA~~L~e~g~qvdi~dl~~-------~~~~~l~~ydavVIgAsI~~~h~~~~~~~Fv 70 (175)
T COG4635 1 MKTLILYSTRDGQ--TRKIA-EYIASHLRESGIQVDIQDLHA-------VEEPALEDYDAVVIGASIRYGHFHEAVQSFV 70 (175)
T ss_pred CceEEEEecCCCc--HHHHH-HHHHHHhhhcCCeeeeeehhh-------hhccChhhCceEEEecchhhhhhHHHHHHHH
Confidence 3678888766654 44554 578888999999999885332 23367789999887654 577889999888
Q ss_pred cCcCccccCCCcEEEecC
Q 011290 188 EREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 188 ~~~~~~~~~~~plgiIP~ 205 (489)
.+.. +.....|.+++-.
T Consensus 71 ~k~~-e~L~~kP~A~f~v 87 (175)
T COG4635 71 KKHA-EALSTKPSAFFSV 87 (175)
T ss_pred HHHH-HHHhcCCceEEEe
Confidence 8642 2233567777666
No 250
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=38.12 E-value=71 Score=35.71 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=58.6
Q ss_pred CcEEEEEEcCCCCCc--cccccchHhHHHHHHhCCCcE---EEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011290 109 PKRLYIFVNPFGGKK--IASKIFLDDVKPLLEDANIQF---TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (489)
Q Consensus 109 pkr~lviiNP~sG~~--~a~~~~~~~v~p~l~~a~i~~---~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVv 183 (489)
..+++-|.|=..|=- +-..+-.+.+..+....|..+ .-.......+-.++.+.+..-+.|++|++||||++.-+.
T Consensus 111 ~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~ 190 (610)
T PLN03028 111 NSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAA 190 (610)
T ss_pred CcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHH
Confidence 356777777555532 223333355777777766521 111122334445556666656789999999999986542
Q ss_pred --HH-hhcCcCccccCCCcEEEecCcCCCCcccccce
Q 011290 184 --NG-LLEREDWNDAIKVPLGVVPADFLDAGTGNGMI 217 (489)
Q Consensus 184 --nG-L~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a 217 (489)
.. +.+. ...+++--||. ==-|++.
T Consensus 191 ~Lae~~~~~-----~~~i~VIGIPK-----TIDNDL~ 217 (610)
T PLN03028 191 QLAETFAEA-----KCKTKVVGVPV-----TLNGDLK 217 (610)
T ss_pred HHHHHHHHc-----CCCceEEEece-----eeeCCCC
Confidence 22 2222 13688888998 4468886
No 251
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=38.12 E-value=2.2e+02 Score=28.75 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=51.4
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCC-CcEEEEEeC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDAN-IQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVV 183 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~-i~~~v~~T~-~~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVv 183 (489)
..++.+.|+++-.+...- .+ +.+-++..+++.| ..+.+..+. ......+..+.+...+.|+|++++.|.. ..+++
T Consensus 22 ~~~~~Igvv~~~~~~~f~-~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~l 99 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFM-SV-VRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAPTVI 99 (330)
T ss_pred cCCceEEEEEecCcchHH-HH-HHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHH
Confidence 456777777754332211 11 2245666777664 444443333 2222334556666678999999988864 45566
Q ss_pred HHhhcCcCccccCCCcEEEecC
Q 011290 184 NGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 184 nGL~~~~~~~~~~~~plgiIP~ 205 (489)
+-+... .+|+-.+-.
T Consensus 100 ~~l~~~-------giPvV~vd~ 114 (330)
T PRK15395 100 EKARGQ-------DVPVVFFNK 114 (330)
T ss_pred HHHHHC-------CCcEEEEcC
Confidence 655443 677766644
No 252
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.08 E-value=1.8e+02 Score=27.86 Aligned_cols=68 Identities=19% Similarity=0.336 Sum_probs=44.8
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhH-HHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~h-a~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+-++..+++.|+.+.+..+.+..+ ..+..+.+...+.|+|++.+++....++++.+..+ ++|+-.+-.
T Consensus 19 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~-------~ipvV~i~~ 87 (269)
T cd06281 19 SGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALASL-------DLPIVLLDR 87 (269)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhC-------CCCEEEEec
Confidence 567788888898887776654332 44566666667899999998764333444444332 577777755
No 253
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=37.81 E-value=2.1e+02 Score=27.36 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=32.4
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
..+...|.+.|+.+.++...... ..+. .++ ..++|+||+.||.|...+
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~~~-~~~~-~~~-~~~~dgliisGGp~~~~~ 61 (214)
T PRK07765 14 FNLVQYLGQLGVEAEVWRNDDPR-LADE-AAV-AAQFDGVLLSPGPGTPER 61 (214)
T ss_pred HHHHHHHHHcCCcEEEEECCCcC-HHHH-HHh-hcCCCEEEECCCCCChhh
Confidence 45677888899998887655321 1222 222 357999999999998763
No 254
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=37.59 E-value=1.1e+02 Score=28.05 Aligned_cols=43 Identities=21% Similarity=0.112 Sum_probs=29.4
Q ss_pred HHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 133 VKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 133 v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
+...|+.+|..+.++..... .. +++..++|+||+.||-|...+
T Consensus 12 ~~~~l~~~G~~~~~~~~~~~--~~----~~~~~~~dgiil~GG~~~~~~ 54 (178)
T cd01744 12 ILRELLKRGCEVTVVPYNTD--AE----EILKLDPDGIFLSNGPGDPAL 54 (178)
T ss_pred HHHHHHHCCCeEEEEECCCC--HH----HHhhcCCCEEEECCCCCChhH
Confidence 56678888988877754432 11 233357999999999876544
No 255
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=37.46 E-value=3.3e+02 Score=27.46 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=52.8
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~--~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.+++.+++....- +++ +.+.++..|+..|+++.....- ...+....++++...+.|.|++.+.......+++.+
T Consensus 138 ~~~v~ii~~~~~~-g~~---~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~~ 213 (347)
T cd06335 138 FKKVALLLDNTGW-GRS---NRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGPEGAQIANGM 213 (347)
T ss_pred CCeEEEEeccCch-hhh---HHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecChHHHHHHHHH
Confidence 5789888877542 222 2357888899999876433221 233455667777667899999998887888888877
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
-+.
T Consensus 214 ~~~ 216 (347)
T cd06335 214 AKL 216 (347)
T ss_pred HHc
Confidence 664
No 256
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=37.44 E-value=40 Score=35.62 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=31.5
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccc-cCCCcEEEecC
Q 011290 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWND-AIKVPLGVVPA 205 (489)
Q Consensus 153 ~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~-~~~~plgiIP~ 205 (489)
++-.++.+.+. ..+|++|+.|||-|+..+-.-+-.+..... ..+..+++|=.
T Consensus 156 ~~d~~~~~~~~-~~~D~vv~wGgd~ti~~ir~~~~~~~~~i~fg~k~S~avi~~ 208 (399)
T PF05893_consen 156 GGDEELEEALS-QQADAVVAWGGDETIRAIRQPLPPGARLIEFGPKYSFAVIDA 208 (399)
T ss_pred CCchHHHHHHH-HHCCEEEEeCCHHHHHHHHHHcCCCCcEeeeCCceEEEEEcC
Confidence 33344444442 468999999999999998883332222111 23566666655
No 257
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=37.40 E-value=46 Score=36.75 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=60.8
Q ss_pred CCCcEEEEEEcCCCCCccc--cccchHhHHHHHHhCCCc-EEEEE--eCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQ-FTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a--~~~~~~~v~p~l~~a~i~-~~v~~--T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
..--+++-|.|=..|=-+. ..+-.+.+..+...-|.+ +---. -....+-..+++.+..-+.|++|++||||++.-
T Consensus 100 ~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~i~~~l~~~~Id~LviIGGd~S~~~ 179 (555)
T PRK07085 100 NPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFDMIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGGDDSNTN 179 (555)
T ss_pred cCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChhhhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHH
Confidence 3346788888866664322 233334567666666642 11000 112334556666666667899999999999875
Q ss_pred HHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 182 VVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 182 VvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
+. -|.+.-. +...++++--||. ==-|++..
T Consensus 180 A~-~Lae~~~-~~~~~i~VIGIPk-----TIDNDl~~ 209 (555)
T PRK07085 180 AA-ILAEYFA-KHGCKTQVIGVPK-----TIDGDLKN 209 (555)
T ss_pred HH-HHHHHHH-HhCCCccEEEEee-----eecCCCCC
Confidence 43 2322100 0124789999998 55688863
No 258
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=37.35 E-value=2.3e+02 Score=27.98 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=50.2
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~--~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+.+++.+|..... -++. ..+.++..++..|+++.....-. ..+...+++++...+.|.|+..+.......++..
T Consensus 134 ~~~~v~~v~~~~~-~g~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~~vi~~~~~~~~~~~~~~ 209 (334)
T cd06342 134 KAKKVAIIDDKTA-YGQG---LADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAANPDAVFFGGYYPEAGPLVRQ 209 (334)
T ss_pred CCCEEEEEeCCcc-hhhH---HHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcCcchhHHHHHHH
Confidence 4578888876543 2222 23577888888898766544322 2445566777776788988877765566667766
Q ss_pred hhcC
Q 011290 186 LLER 189 (489)
Q Consensus 186 L~~~ 189 (489)
+.+.
T Consensus 210 ~~~~ 213 (334)
T cd06342 210 MRQL 213 (334)
T ss_pred HHHc
Confidence 6554
No 259
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=37.31 E-value=1.7e+02 Score=27.67 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=54.0
Q ss_pred EEcCCCCCccccccchHhHHHHHHhCCCcEEEE-EeCChhH-HHHHHHHhhcCCCceEEEEcCCC-hHHHHHHHhhcCcC
Q 011290 115 FVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQQLH-AKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNGLLERED 191 (489)
Q Consensus 115 iiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~-~T~~~~h-a~el~~~~~~~~~d~IV~vGGDG-tl~EVvnGL~~~~~ 191 (489)
|+.|..+..- ...+.+-++...++.|+++.+. ....... -.+.++++...++|+||+..-|. .+.++++.+...
T Consensus 3 vi~~~~~~~~-~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~-- 79 (257)
T PF13407_consen 3 VIVPSMDNPF-WQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAA-- 79 (257)
T ss_dssp EEESSSSSHH-HHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHT--
T ss_pred EEeCCCCCHH-HHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhc--
Confidence 5566665542 2223456788888889988885 3333222 22455666567899999998887 466788877664
Q ss_pred ccccCCCcEEEecC
Q 011290 192 WNDAIKVPLGVVPA 205 (489)
Q Consensus 192 ~~~~~~~plgiIP~ 205 (489)
.+|+-.+=.
T Consensus 80 -----gIpvv~~d~ 88 (257)
T PF13407_consen 80 -----GIPVVTVDS 88 (257)
T ss_dssp -----TSEEEEESS
T ss_pred -----CceEEEEec
Confidence 678777644
No 260
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=37.28 E-value=2.6e+02 Score=26.58 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=42.8
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhH-HHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~h-a~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+-++..+++.|..+.++.+.+... ..++.+.+...++|+|++++-|-.... +.-+... .+|+-++-.
T Consensus 19 ~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~~~~~~~-~~~~~~~-------~ipvV~~~~ 86 (268)
T cd06270 19 SGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSKALSDDE-LIELAAQ-------VPPLVLINR 86 (268)
T ss_pred HHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecCCCCHHH-HHHHhhC-------CCCEEEEec
Confidence 467788888999888877654322 234556665678999999987644322 4444332 567666643
No 261
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.25 E-value=1.6e+02 Score=28.12 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=45.5
Q ss_pred hHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 130 LDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
.+.++..++..|+++.+..+.+ .....+..+.+...+.|+|++.+-|.. ..+.++.+.+. .+|+-.+-.
T Consensus 18 ~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~-------~ipvV~~~~ 88 (267)
T cd06322 18 ANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKA-------GIPVITVDI 88 (267)
T ss_pred HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHC-------CCCEEEEcc
Confidence 3567788888888887766653 333456666666678999999887654 34556655432 567666543
No 262
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=37.10 E-value=2e+02 Score=31.63 Aligned_cols=84 Identities=20% Similarity=0.167 Sum_probs=48.7
Q ss_pred ceeEeeEEecCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE-EeCChhH
Q 011290 76 SVVRKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQQLH 154 (489)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~-~T~~~~h 154 (489)
..+....++.....+. ..+|.+.+.+.- -+++.||+|-.-| .+.+...|+.+|+++... -...+++
T Consensus 489 ~~rveQ~v~m~~ed~k----~kkL~eil~~~~-~ppiIIFvN~kk~--------~d~lAk~LeK~g~~~~tlHg~k~qeQ 555 (673)
T KOG0333|consen 489 TPRVEQKVEMVSEDEK----RKKLIEILESNF-DPPIIIFVNTKKG--------ADALAKILEKAGYKVTTLHGGKSQEQ 555 (673)
T ss_pred ccchheEEEEecchHH----HHHHHHHHHhCC-CCCEEEEEechhh--------HHHHHHHHhhccceEEEeeCCccHHH
Confidence 3344444554443322 355667776552 3469999996433 257889999999876543 3333333
Q ss_pred HHHHHHHhhcCCCceEEE
Q 011290 155 AKEIVKVLDLSKYDGIVC 172 (489)
Q Consensus 155 a~el~~~~~~~~~d~IV~ 172 (489)
-......+.....|.+||
T Consensus 556 Re~aL~~fr~~t~dIlVa 573 (673)
T KOG0333|consen 556 RENALADFREGTGDILVA 573 (673)
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 333344454456777776
No 263
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=36.83 E-value=64 Score=32.04 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=36.7
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcC
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGG 175 (489)
+|+.|++-|-+..- ..+...|+.+|+++.++.+.... + ...++++||+||+.||
T Consensus 4 ~kvaVl~~pG~n~d-------~e~~~Al~~aG~~v~~v~~~~~~---~--~~~~l~~~DgLvipGG 57 (261)
T PRK01175 4 IRVAVLRMEGTNCE-------DETVKAFRRLGVEPEYVHINDLA---A--ERKSVSDYDCLVIPGG 57 (261)
T ss_pred CEEEEEeCCCCCCH-------HHHHHHHHHCCCcEEEEeecccc---c--cccchhhCCEEEECCC
Confidence 57999998855432 24567888899988777654311 1 1122468999999999
No 264
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=36.65 E-value=2.3e+02 Score=29.28 Aligned_cols=79 Identities=9% Similarity=0.175 Sum_probs=49.4
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh--hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~--~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
..+++.+|+.-..-...... ..+.+...++..|+++....+... ....++++++...+ +.||+++..-....++..
T Consensus 136 ~W~~vaiiy~~~~~~~~~~~-~~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~-rvii~~~~~~~~~~ll~~ 213 (387)
T cd06386 136 HWRSALLVYEDDKQERNCYF-TLEGVHHVFQEEGYHMSIYPFDETKDLDLDEIIRAIQASE-RVVIMCAGADTIRSIMLA 213 (387)
T ss_pred CCeEEEEEEEcCCCCcccee-hHHHHHHHHHhcCceEEEEecCCCCcccHHHHHHHHHhcC-cEEEEecCHHHHHHHHHH
Confidence 45788877753221111111 135778889999988877655432 36778888887666 777777766666666665
Q ss_pred hhc
Q 011290 186 LLE 188 (489)
Q Consensus 186 L~~ 188 (489)
..+
T Consensus 214 A~~ 216 (387)
T cd06386 214 AHR 216 (387)
T ss_pred HHH
Confidence 443
No 265
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=36.51 E-value=2.8e+02 Score=27.45 Aligned_cols=77 Identities=8% Similarity=0.041 Sum_probs=49.6
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.+++.++.+..+ -++ .. .+.++..|+++|+++.... .....+...++.++...+.|.|++++...-...+++.+
T Consensus 134 ~~~v~~l~~~~~-~g~--~~-~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~~~~~~~~~~~~~~~ 209 (336)
T cd06360 134 YKKVVTVAWDYA-FGY--EV-VEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVFFAGGDAIKFVKQY 209 (336)
T ss_pred CCeEEEEeccch-hhH--HH-HHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEEecccccHHHHHHHH
Confidence 577888876444 222 22 2467788999998764322 22345556677777777899998876665566677777
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
...
T Consensus 210 ~~~ 212 (336)
T cd06360 210 DAA 212 (336)
T ss_pred HHc
Confidence 544
No 266
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=36.47 E-value=1.4e+02 Score=28.76 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=43.6
Q ss_pred HhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++..+++.|+++.+..+.+. ..-.++++.+...++|+||+.+.+.. +.+.++-+.+. .+|+-.+
T Consensus 19 ~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~-------~iPvV~~ 86 (273)
T cd06309 19 KSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAA-------GIPVILV 86 (273)
T ss_pred HHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHC-------CCCEEEE
Confidence 5678888888988877765432 22224566666678999999887754 34666665543 5665554
No 267
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=36.31 E-value=2.1e+02 Score=27.03 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=38.9
Q ss_pred hHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 130 LDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
.+.++..+++.|..+.+..+.+ +....+..+++...++|+||+++.+.. ..++..+..
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~~-~~~~~~~~~ 76 (259)
T cd01542 18 VKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATTIT-DEHREAIKK 76 (259)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHhc
Confidence 3567788888898887776653 333345667776678999999987754 244555443
No 268
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=36.15 E-value=1e+02 Score=29.31 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=42.9
Q ss_pred HHHHhhhhc-CCCcEEEEEEcCCCCCccccccchHhHHHHHHhC-CCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcC
Q 011290 98 KLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (489)
Q Consensus 98 ~l~~~~~~~-~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a-~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGG 175 (489)
.|.+.+... ++.+++++| |.+..- ..-|.+.+...|+.. |+++....+.. -.+..+.+ .+.|.|++-||
T Consensus 19 ~l~~~l~~~~~~~~~i~~I--ptAs~~--~~~~~~~~~~a~~~l~G~~~~~~~~~~---~~~~~~~l--~~ad~I~l~GG 89 (212)
T cd03146 19 AIDDLLLSLTKARPKVLFV--PTASGD--RDEYTARFYAAFESLRGVEVSHLHLFD---TEDPLDAL--LEADVIYVGGG 89 (212)
T ss_pred HHHHHHHHhccCCCeEEEE--CCCCCC--HHHHHHHHHHHHhhccCcEEEEEeccC---cccHHHHH--hcCCEEEECCc
Confidence 344444443 233444444 333332 223456788999999 99877665433 11222333 46787777774
Q ss_pred CChHHHHHHHhhc
Q 011290 176 DGILVEVVNGLLE 188 (489)
Q Consensus 176 DGtl~EVvnGL~~ 188 (489)
-....++.|-+
T Consensus 90 --~~~~~~~~l~~ 100 (212)
T cd03146 90 --NTFNLLAQWRE 100 (212)
T ss_pred --hHHHHHHHHHH
Confidence 55555555544
No 269
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=36.13 E-value=2.2e+02 Score=28.81 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=45.5
Q ss_pred HhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+-++..+.+.|..+.+..+.+ .....++.+.+...++|+||+.+.+.. +.+.++-+... .+|+-++
T Consensus 45 ~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~l~~~~~~-------~iPvV~i 112 (330)
T PRK10355 45 DIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEAKQE-------GIKVLAY 112 (330)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHC-------CCeEEEE
Confidence 456778888898888876643 233445666666678999999987754 45666666543 5787776
No 270
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=36.05 E-value=2.8e+02 Score=27.73 Aligned_cols=87 Identities=11% Similarity=0.137 Sum_probs=49.9
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
+.+.|+ .|.....--..+ .+-++..+++.|+++.+..+.+ ...-.++.+.+...+.|+|++.+++-.- +.+.-|..
T Consensus 60 ~~i~vi-~~~~~~~~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~-~~~~~l~~ 136 (341)
T PRK10703 60 KSIGLL-ATSSEAPYFAEI-IEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYPE-PLLAMLEE 136 (341)
T ss_pred CeEEEE-eCCCCCchHHHH-HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHHh
Confidence 344444 465433222222 2467777888898877776553 2222345566656789999998876432 45555543
Q ss_pred CcCccccCCCcEEEecC
Q 011290 189 REDWNDAIKVPLGVVPA 205 (489)
Q Consensus 189 ~~~~~~~~~~plgiIP~ 205 (489)
. ..+|+-.+=.
T Consensus 137 ~------~~iPvV~~d~ 147 (341)
T PRK10703 137 Y------RHIPMVVMDW 147 (341)
T ss_pred c------CCCCEEEEec
Confidence 1 1577766633
No 271
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=35.79 E-value=3.5e+02 Score=27.54 Aligned_cols=78 Identities=9% Similarity=-0.004 Sum_probs=50.2
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~--~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
..+++.++++-.. -++ . +.+.++..|++.|+++.....- ...+....+.++...+.|.|++.+-......++..
T Consensus 139 ~~~kvaiv~~~~~-~g~--~-~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~~~~~~~~~ 214 (351)
T cd06334 139 KGKKIALVYHDSP-FGK--E-PIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKE 214 (351)
T ss_pred CCCeEEEEeCCCc-cch--h-hHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccchHHHHHHH
Confidence 4678887766433 222 2 2356788899999876443321 22355566667766789999887776677777777
Q ss_pred hhcC
Q 011290 186 LLER 189 (489)
Q Consensus 186 L~~~ 189 (489)
+-..
T Consensus 215 ~~~~ 218 (351)
T cd06334 215 AKRV 218 (351)
T ss_pred HHHc
Confidence 7554
No 272
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.66 E-value=76 Score=25.34 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=30.1
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGD 176 (489)
+...+...|..+|+.+.+..... ......+.++..++..++++|.+
T Consensus 19 ~a~~la~~Lr~~g~~v~~d~~~~--~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 19 LAEKLYAELQAAGVDVLLDDRNE--RPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHHHHCCCEEEEECCCC--CcccchhHHHhcCCCEEEEECCc
Confidence 34467777888898887754322 23333455556788999999955
No 273
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.57 E-value=1.9e+02 Score=28.29 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=41.2
Q ss_pred HhHHHHHHhCCCcEEEE-EeC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQ-ETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~-~T~-~~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+-++..+++.|+++.++ .++ .+....+..+.+...+.|+|++.+.|-. ..++++.+..+ .+|+-++
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~ 87 (294)
T cd06316 19 RGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVAEA-------GIKLVFM 87 (294)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHHHc-------CCcEEEe
Confidence 45667788888877644 232 2222234555555568999999887754 35677776654 5676554
No 274
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=35.47 E-value=1.9e+02 Score=29.04 Aligned_cols=79 Identities=19% Similarity=0.084 Sum_probs=51.1
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T--~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
..+++.+|+.....-++. ..+.++..+++.|+++....+ ....+...++.++...+.|.|++.+.-+....+++.
T Consensus 135 ~~~~v~~l~~~~~~~g~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi~~~~~~~~~~~~~~ 211 (344)
T cd06348 135 GIKRVAVFYAQDDAFSVS---ETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISALAADGGNLVRQ 211 (344)
T ss_pred CCeEEEEEEeCCchHHHH---HHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEECCcchhHHHHHHH
Confidence 457888887432211222 235788899999987653322 123455667777777789988877766666778877
Q ss_pred hhcC
Q 011290 186 LLER 189 (489)
Q Consensus 186 L~~~ 189 (489)
+-+.
T Consensus 212 ~~~~ 215 (344)
T cd06348 212 LREL 215 (344)
T ss_pred HHHc
Confidence 7665
No 275
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=35.37 E-value=1.7e+02 Score=32.04 Aligned_cols=66 Identities=12% Similarity=0.160 Sum_probs=48.5
Q ss_pred hhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc
Q 011290 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 103 ~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG 174 (489)
+......+.+-||+|-.+|++.-. +. ++++.+++++|.++-++.....+-|+- +...+.|+.|.+|
T Consensus 275 I~kA~~A~~~GIlVgTL~~q~~~~-ii-~~l~~li~~~GkK~yl~~vgkinpaKL----aNF~eID~fV~va 340 (496)
T TIGR00272 275 VHVARDAGCIGIVVGTLGVRNTRE-TI-NELRKMIKTAGKKHYLFVVGKPNPAKL----ANFEDIDIFVLLG 340 (496)
T ss_pred HHHHhcCCEEEEEEecCccCCCHH-HH-HHHHHHHHHcCCcEEEEEeCCCCHHHH----hCCCCCCEEEEcc
Confidence 444455678999999999988643 44 689999999999988888887776532 2333578777654
No 276
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=35.34 E-value=1.6e+02 Score=31.87 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhhhcC--CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCc
Q 011290 90 DSKRLWCEKLRDFIDSFG--RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQ 143 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~~--rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~ 143 (489)
+....|.+.|.+.+.... +.+++-|++++..|.+. ..+.++|+..|++
T Consensus 163 ~~~~~Y~~~l~~~i~~~~~~~~~~~kVvvD~~~G~~~------~~~~~il~~LG~~ 212 (487)
T cd05799 163 EIDDAYLEAVKKLLVNPELNEGKDLKIVYTPLHGVGG------KFVPRALKEAGFT 212 (487)
T ss_pred HHHHHHHHHHHhhhcccccccCCCCcEEEeCCCCccH------HHHHHHHHHcCCC
Confidence 345667787777765321 34578999999998753 3577888888887
No 277
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=35.12 E-value=1.1e+02 Score=34.05 Aligned_cols=105 Identities=14% Similarity=0.109 Sum_probs=59.7
Q ss_pred CcEEEEEEcCCCCC--ccccccchHhHHHHHHhCCCcEE---EEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011290 109 PKRLYIFVNPFGGK--KIASKIFLDDVKPLLEDANIQFT---VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (489)
Q Consensus 109 pkr~lviiNP~sG~--~~a~~~~~~~v~p~l~~a~i~~~---v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVv 183 (489)
-.+++-|.|=..|= ++-..+-.+.+..+....|.+.- -...+.+.+-.++.+.+..-+.|++|++||||+..-+.
T Consensus 128 ~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~ 207 (568)
T PLN02251 128 GSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETATKLDLDGLVVIGGDDSNTNAC 207 (568)
T ss_pred CCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHH
Confidence 44677777765553 23333334456666666665320 01123344555566666556789999999999886543
Q ss_pred HHhhcCcCccccCCCcEEEecCcCCCCcccccceecc
Q 011290 184 NGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSL 220 (489)
Q Consensus 184 nGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl 220 (489)
. |.+.- .+...++++--||. ==-|++..+-
T Consensus 208 ~-Lae~~-~~~g~~i~VIGVPK-----TIDNDL~~td 237 (568)
T PLN02251 208 L-LAEYF-RAKNLKTRVIGCPK-----TIDGDLKSKE 237 (568)
T ss_pred H-HHHHH-HhcCCCeeEEEeCc-----eEeCCCCCCc
Confidence 2 22200 00113578888898 4468887654
No 278
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=35.03 E-value=1.9e+02 Score=27.76 Aligned_cols=66 Identities=6% Similarity=-0.054 Sum_probs=41.3
Q ss_pred HhHHHHHHhCCCcEEEEEeCC---hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~---~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
.-++..++..|+++.+..+.. ...-.+.++.+...+.|+|++.+.|.+-.+.+..+..+ .+|+-.+
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~-------giPvV~~ 87 (268)
T cd06306 19 YGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAA-------SIPVIAL 87 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHC-------CCCEEEe
Confidence 456677888888877765442 22233456666567899999998876543334444332 6776655
No 279
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=34.96 E-value=76 Score=28.63 Aligned_cols=39 Identities=8% Similarity=0.006 Sum_probs=29.1
Q ss_pred EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChh
Q 011290 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL 153 (489)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ 153 (489)
..|.|+++|-||..- .-.+.-.|...|.++-++.+..++
T Consensus 2 i~v~s~kgG~GKTt~--a~~LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 2 IAVMSGKGGVGKSTV--AVNLALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred EEEecCCCcCChhHH--HHHHHHHHHHcCCcEEEEeCCCCC
Confidence 578899999988652 346777888888888887766544
No 280
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=34.94 E-value=48 Score=30.34 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=31.7
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~ 180 (489)
..+...|+.+|.++.++....... ..++.++|+||+-||.+..+
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~------~~~~~~~dgvIl~Gg~~~~~ 55 (181)
T cd01742 12 HLIARRVRELGVYSEILPNTTPLE------EIKLKNPKGIILSGGPSSVY 55 (181)
T ss_pred HHHHHHHHhcCceEEEecCCCChh------hhcccCCCEEEECCCccccc
Confidence 457888999998888776554211 22456899999999987654
No 281
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=34.94 E-value=1.4e+02 Score=29.00 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=41.5
Q ss_pred CCCcEEEEEEcCCC-----CCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhh---cCCCc-eEEEEcCCC
Q 011290 107 GRPKRLYIFVNPFG-----GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD---LSKYD-GIVCVSGDG 177 (489)
Q Consensus 107 ~rpkr~lviiNP~s-----G~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~---~~~~d-~IV~vGGDG 177 (489)
.+++++.+|||-.. ....+...=.+.++.+|+..|+++.+..=-...+..+.++++. ...+| .+++.-|-|
T Consensus 6 ~~~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG 85 (243)
T cd00032 6 SKRRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVILSHG 85 (243)
T ss_pred CCCCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEECCCC
Confidence 34667766666532 1222211223678999999999887765444455555555543 24566 355566666
Q ss_pred h
Q 011290 178 I 178 (489)
Q Consensus 178 t 178 (489)
.
T Consensus 86 ~ 86 (243)
T cd00032 86 E 86 (243)
T ss_pred C
Confidence 4
No 282
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=34.90 E-value=2e+02 Score=27.92 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=38.9
Q ss_pred HhHHHHHHhCCCcEEEEEeC-----ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcC
Q 011290 131 DDVKPLLEDANIQFTVQETT-----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~-----~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
+.++..++..|+++.+..+. ....-.++.+.+...+.|+||+++.+....+.+.-+.+.
T Consensus 20 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~~~~~~l~~~ 83 (280)
T cd06303 20 ASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDSLRHRKLIERVLAS 83 (280)
T ss_pred HHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCCchhhHHHHHHHHhC
Confidence 56777888889887776432 122233455666667899999988766555666666554
No 283
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=34.79 E-value=2e+02 Score=32.92 Aligned_cols=58 Identities=10% Similarity=-0.019 Sum_probs=43.1
Q ss_pred hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcC
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
.+.+..+|+.+|+++ .....-....++++.+..++.|.|++||=|++--|.+..+++.
T Consensus 599 a~fv~~~l~~~GfeV--~~~~~~~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~~ 656 (714)
T PRK09426 599 AKVIATAFADLGFDV--DIGPLFQTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEA 656 (714)
T ss_pred HHHHHHHHHhCCeeE--ecCCCCCCHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHHH
Confidence 356899999999987 3332223355777777777899999999999988877776654
No 284
>PRK13566 anthranilate synthase; Provisional
Probab=34.66 E-value=1.5e+02 Score=33.89 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=40.7
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~ 180 (489)
++++++||=|=.+ |...+...|+..|.++.++...... +. ++..++|+||+.||-|...
T Consensus 525 ~g~~IlvID~~ds--------f~~~l~~~Lr~~G~~v~vv~~~~~~---~~---~~~~~~DgVVLsgGpgsp~ 583 (720)
T PRK13566 525 EGKRVLLVDHEDS--------FVHTLANYFRQTGAEVTTVRYGFAE---EM---LDRVNPDLVVLSPGPGRPS 583 (720)
T ss_pred CCCEEEEEECCCc--------hHHHHHHHHHHCCCEEEEEECCCCh---hH---hhhcCCCEEEECCCCCChh
Confidence 4567777766422 3457888999999988887665422 22 2334799999999998754
No 285
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.66 E-value=3.4e+02 Score=26.76 Aligned_cols=77 Identities=8% Similarity=-0.012 Sum_probs=46.2
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.+++.+|+...+.-+. . ..+.++..+++.|+++.... .....+...+++++...+.|.|++.+.......++..+
T Consensus 135 ~~~v~ii~~~~~~~~~--~-~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~ 211 (334)
T cd06347 135 AKKAAVLYDNSSDYSK--G-LAKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTEVGLIAKQA 211 (334)
T ss_pred CcEEEEEEeCCCchhH--H-HHHHHHHHHHHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhhHHHHHHHH
Confidence 4678888743222122 1 22567778888888664322 22334566677777667889888877666666666555
Q ss_pred hc
Q 011290 187 LE 188 (489)
Q Consensus 187 ~~ 188 (489)
..
T Consensus 212 ~~ 213 (334)
T cd06347 212 RE 213 (334)
T ss_pred HH
Confidence 43
No 286
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=34.46 E-value=4.7e+02 Score=25.85 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=45.9
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.+++.++.... .-+ .... +.++..+++.|+++.... .....+....+.++...+.|+|++.+-+.....++..+
T Consensus 136 ~~~v~~l~~~~-~~~--~~~~-~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~i~~~ 211 (336)
T cd06326 136 LKRIAVFYQDD-AFG--KDGL-AGVEKALAARGLKPVATASYERNTADVAAAVAQLAAARPQAVIMVGAYKAAAAFIRAL 211 (336)
T ss_pred CceEEEEEecC-cch--HHHH-HHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHH
Confidence 57887776533 222 2223 567888898888653322 11123555666666555688777766444566788877
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
-+.
T Consensus 212 ~~~ 214 (336)
T cd06326 212 RKA 214 (336)
T ss_pred Hhc
Confidence 654
No 287
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.44 E-value=2.3e+02 Score=27.37 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=44.0
Q ss_pred hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
.+.++..+++.|+++.++.+.+ + .+..+.+...+.|+|++.+-+.+- +.++-+... .+|+-.+-.
T Consensus 23 ~~gi~~~a~~~g~~~~~~~~~~--~-~~~~~~~~~~~~dgiii~~~~~~~-~~~~~~~~~-------~ipvV~~~~ 87 (283)
T cd06279 23 LAGVAEVLDAAGVNLLLLPASS--E-DSDSALVVSALVDGFIVYGVPRDD-PLVAALLRR-------GLPVVVVDQ 87 (283)
T ss_pred HHHHHHHHHHCCCEEEEecCcc--H-HHHHHHHHhcCCCEEEEeCCCCCh-HHHHHHHHc-------CCCEEEEec
Confidence 3567888888999888887765 2 234455556789999999877653 455555432 567766644
No 288
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=34.21 E-value=1.4e+02 Score=31.83 Aligned_cols=50 Identities=12% Similarity=0.029 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE
Q 011290 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~ 147 (489)
...|.+.|.+.++..-+-.++-|++.+..|.+. ..+.++|+..|+++..+
T Consensus 158 ~~~Y~~~l~~~id~~i~~~~~kVvvD~~~Ga~~------~~~~~il~~lg~~v~~~ 207 (450)
T PRK14314 158 PGRYIVFLKATFPKGLTLKGLKIVLDCANGAAY------KVAPAVFEELGAEVICI 207 (450)
T ss_pred HHHHHHHHHHhhccccCCCCCEEEEECCCchHH------HHHHHHHHHcCCeEEEe
Confidence 455777777776521123468899999887642 34667888888876543
No 289
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=34.21 E-value=2.1e+02 Score=23.10 Aligned_cols=68 Identities=12% Similarity=0.056 Sum_probs=40.5
Q ss_pred HHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhC-CCcEEEEEeCChhHHHHHHHHhhcCCCceEEE
Q 011290 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (489)
Q Consensus 99 l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a-~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~ 172 (489)
+++++..+.+|-.+.+|+.|..+.-+... +.+..+-+.. ++++.++.. .+..+++++......-.+++
T Consensus 3 ~~~~~~~l~~pv~i~~F~~~~C~~C~~~~---~~~~~l~~~~~~i~~~~vd~---~~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 3 LLEQIRRLNGPINFETYVSLSCHNCPDVV---QALNLMAVLNPNIEHEMIDG---ALFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred HHHHHHhcCCCEEEEEEECCCCCCcHHHH---HHHHHHHHHCCCceEEEEEh---HhCHHHHHHcCCccCCEEEE
Confidence 45667777889999999999887654322 2233333333 466666643 34456667765544444443
No 290
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=34.19 E-value=1.3e+02 Score=26.91 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=33.1
Q ss_pred hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEE
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~v 173 (489)
++.++......|++++.+.|.+++...+.+++.. +++|+||+-
T Consensus 30 ~~~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~-~~~dgiIIN 72 (140)
T cd00466 30 EALLRELAAELGVEVEFFQSNHEGELIDWIHEAR-DGADGIIIN 72 (140)
T ss_pred HHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhh-ccCcEEEEc
Confidence 3455566666799999999999999888888874 468887753
No 291
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=34.04 E-value=2.7e+02 Score=26.26 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=44.2
Q ss_pred chHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.+.++..+++.|+.+.+..+++ .....+..+.+...++|+|++.+.|..- +.++-+... .+|+-.+-.
T Consensus 17 ~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~-~~l~~~~~~-------~ipvV~~~~ 86 (267)
T cd06283 17 VLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGNNK-ELYQRLAKN-------GKPVVLVDR 86 (267)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCCCh-HHHHHHhcC-------CCCEEEEcC
Confidence 33567788888888887766654 2223355566666789999999987653 334444332 567766644
No 292
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=33.98 E-value=66 Score=29.99 Aligned_cols=44 Identities=25% Similarity=0.349 Sum_probs=32.6
Q ss_pred HHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 155 a~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
|.+++.....+.+|.||.++|||-+--+++.+-.+ ....-+++.
T Consensus 99 a~D~~~l~~~~~~D~ivl~SgD~DF~p~v~~~~~~-------G~rv~v~~~ 142 (181)
T COG1432 99 AVDAMELADKKNVDTIVLFSGDGDFIPLVEAARDK-------GKRVEVAGI 142 (181)
T ss_pred HHHHHHhhcccCCCEEEEEcCCccHHHHHHHHHHc-------CCEEEEEec
Confidence 34455555556899999999999999999988776 345555555
No 293
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=33.79 E-value=89 Score=27.23 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=36.2
Q ss_pred HhHHHHHHhCCCcEEEEE--eCChhHHHHHHHHhhcCCCceEEEEcCCC-----hHHHHHHHhhc
Q 011290 131 DDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDG-----ILVEVVNGLLE 188 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~--T~~~~ha~el~~~~~~~~~d~IV~vGGDG-----tl~EVvnGL~~ 188 (489)
..++.+|+..|+++.... .+......+.++++. +++|.||+.||=| ...|++..+..
T Consensus 21 ~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~-~~~dliittGG~g~g~~D~t~~~l~~~~~ 84 (135)
T smart00852 21 PALAELLTELGIEVTRYVIVPDDKEAIKEALREAL-ERADLVITTGGTGPGPDDVTPEAVAEALG 84 (135)
T ss_pred HHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHH-hCCCEEEEcCCCCCCCCcCcHHHHHHHhC
Confidence 468889999998754332 244444444444443 4699999999866 34566666544
No 294
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=33.74 E-value=1.5e+02 Score=31.67 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC----------ChhHHHHHHH
Q 011290 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----------QQLHAKEIVK 160 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~----------~~~ha~el~~ 160 (489)
....|.+.|.+.++ .+.+++-|++++..|.+. ..+.++|+..|+++..+..+ .+.+..++.+
T Consensus 157 ~~~~Y~~~l~~~i~--~~~~~~kVvvD~~nG~~~------~~~~~ll~~lG~~v~~in~~~dg~~~~~~~~~~~l~~l~~ 228 (448)
T PRK14318 157 ATDRYLRHLLGALP--TRLDGLKVVVDCAHGAAS------GVAPEAYRAAGADVIAINADPDGLNINDGCGSTHLEQLQA 228 (448)
T ss_pred HHHHHHHHHHHHhc--cccCCCEEEEECCCchHH------HHHHHHHHHcCCEEEEeccCCCCCCCCCCCCCCCHHHHHH
Confidence 34567777777664 233578899999888653 24667888889876544222 0123333333
Q ss_pred HhhcCCCceEEEEcCCC
Q 011290 161 VLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 161 ~~~~~~~d~IV~vGGDG 177 (489)
.+...++|.-++.-|||
T Consensus 229 ~v~~~~adlGia~DgD~ 245 (448)
T PRK14318 229 AVVAHGADLGLAHDGDA 245 (448)
T ss_pred HHHhcCCCEEEEecCCC
Confidence 33333456655555555
No 295
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=33.67 E-value=2.1e+02 Score=27.61 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=43.4
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChH-HHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl-~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+-++..+++.|..+.+..+.......+..+.+...+.|+||+.+-|... -++++.+... .+|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~~-------~iPvV~~ 85 (289)
T cd01540 19 KFAKKAAKEKGFTVVKIDVPDGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKAY-------NMKVVAV 85 (289)
T ss_pred HHHHHHHHHcCCEEEEccCCCHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHHhC-------CCeEEEe
Confidence 4567888888988877766543333345556655789999999888533 3456666553 5776655
No 296
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=33.58 E-value=2e+02 Score=28.44 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=43.4
Q ss_pred HhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++..++..|+++.+..+... ..-.++++.+...+.|+|++++-|.. +.+.+..+.+. .+|+-.+
T Consensus 18 ~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~~-------~iPvV~~ 85 (302)
T TIGR02634 18 DIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKDE-------GIKVVAY 85 (302)
T ss_pred HHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHC-------CCeEEEe
Confidence 4677778888887766544321 11224556666678999999998865 46677766553 5777666
No 297
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=33.47 E-value=1.4e+02 Score=30.14 Aligned_cols=71 Identities=20% Similarity=0.126 Sum_probs=44.2
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EV 182 (489)
.+-+.|+-.|....++..+.....|+...+++++++.. .+..+. .++...+..-++|.+|++|=.-.+.+-
T Consensus 24 ~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~--~~~~~~-~~~~~~l~~~~~Dliv~~~~~~iip~~ 94 (309)
T PRK00005 24 HEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQ--PEKLRD-PEFLAELAALNADVIVVVAYGQILPKA 94 (309)
T ss_pred CcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEEC--cCCCCC-HHHHHHHHhcCcCEEEEehhhcccCHH
Confidence 44566777887655555544445788888999998632 222222 133444544579999999876655543
No 298
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=33.45 E-value=1.4e+02 Score=26.93 Aligned_cols=42 Identities=12% Similarity=0.347 Sum_probs=32.1
Q ss_pred hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEE
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~ 172 (489)
++.++......|++++.+.+.+++...+.++++. +++|+||+
T Consensus 30 ~~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~-~~~dgiII 71 (141)
T TIGR01088 30 VEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAE-GQYDGIII 71 (141)
T ss_pred HHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcc-ccCCEEEE
Confidence 3455566666799999999999999888888764 35787774
No 299
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=33.43 E-value=2.2e+02 Score=27.94 Aligned_cols=55 Identities=7% Similarity=-0.080 Sum_probs=36.3
Q ss_pred HhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHhhcCCCceEEEEcCCChH-HHHHHH
Q 011290 131 DDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNG 185 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~~~~~~d~IV~vGGDGtl-~EVvnG 185 (489)
+-++..+++.|..+.+..+. ......+.++.+...++|+||+.+.|... .+.+..
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~ 77 (295)
T TIGR02955 19 YGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPEALNHDLAQ 77 (295)
T ss_pred HHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhHHHHH
Confidence 45667788888888776654 33334456677666789999998876432 344443
No 300
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=33.43 E-value=2.6e+02 Score=28.20 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=49.1
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~--~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.+++.+|+... .-++ . ..+.++..++++|+++.....- ...+...++.++...+.|.|++.+..+....++..+
T Consensus 144 ~~~v~ii~~~~-~~g~--~-~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~ 219 (362)
T cd06343 144 NAKIAVLYQND-DFGK--D-YLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVLATTPKFAAQAIRKA 219 (362)
T ss_pred CceEEEEEecc-HHHH--H-HHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHH
Confidence 56777776433 2232 2 2367888899999875433222 222344566676667899998888776777788777
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
-+.
T Consensus 220 ~~~ 222 (362)
T cd06343 220 AEL 222 (362)
T ss_pred HHc
Confidence 554
No 301
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=33.42 E-value=2.4e+02 Score=24.65 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=50.4
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChh-HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~-ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.-+.+-++-||.++..++.. -.+..+|...|+++-+. ...| -|....++. ..+.+...+ +|+-|+++.+
T Consensus 35 ~i~~vev~~np~~~~~~g~G---~~~a~~l~~~gvdvvi~--~~iG~~a~~~l~~~---GIkv~~~~~--~~V~e~i~~~ 104 (121)
T COG1433 35 EIKNVEVIENPAASAEKGAG---IRIAELLVDEGVDVVIA--SNIGPNAYNALKAA---GIKVYVAPG--GTVEEAIKAF 104 (121)
T ss_pred cEEEEEEeecccccccCcch---HHHHHHHHHcCCCEEEE--CccCHHHHHHHHHc---CcEEEecCC--CCHHHHHHHH
Confidence 34678899999777666554 25777899998875444 3333 355555553 567777666 9999999998
Q ss_pred hcCc
Q 011290 187 LERE 190 (489)
Q Consensus 187 ~~~~ 190 (489)
....
T Consensus 105 ~~g~ 108 (121)
T COG1433 105 LEGE 108 (121)
T ss_pred hcCC
Confidence 8763
No 302
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=33.40 E-value=1.2e+02 Score=25.03 Aligned_cols=82 Identities=9% Similarity=0.223 Sum_probs=48.3
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~ 187 (489)
+.++++++.+ .|-+.....++++..+++.|+++++..+.... +... ..++|.|++ +-+ +..-.+.+-
T Consensus 2 ~~~~ILl~C~----~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~----~~~~--~~~~Dvill-~pq--i~~~~~~i~ 68 (95)
T TIGR00853 2 NETNILLLCA----AGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGA----AGEK--LDDADVVLL-APQ--VAYMLPDLK 68 (95)
T ss_pred CccEEEEECC----CchhHHHHHHHHHHHHHHCCCcEEEEEecHHH----HHhh--cCCCCEEEE-Cch--HHHHHHHHH
Confidence 3467777764 34455567789999999999999887655422 2122 246885553 322 222222222
Q ss_pred cCcCccccCCCcEEEecC
Q 011290 188 EREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 188 ~~~~~~~~~~~plgiIP~ 205 (489)
+.- ....+|+..||.
T Consensus 69 ~~~---~~~~ipv~~I~~ 83 (95)
T TIGR00853 69 KET---DKKGIPVEVING 83 (95)
T ss_pred HHh---hhcCCCEEEeCh
Confidence 211 113689999998
No 303
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=32.94 E-value=1.5e+02 Score=31.73 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhhh-cC--CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC-----------ChhHHHH
Q 011290 92 KRLWCEKLRDFIDS-FG--RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-----------QQLHAKE 157 (489)
Q Consensus 92 ~~~w~~~l~~~~~~-~~--rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~-----------~~~ha~e 157 (489)
...|.+.|.+.+.. .. +.+++.|+++|..|.+. ..+.++|+..|+++..+..+ .+....+
T Consensus 151 ~~~Y~~~l~~~~~~~~~~~~~~~lkVvvd~~~G~~~------~~~~~ll~~lg~~v~~~~~~~d~~F~~~p~p~~~~l~~ 224 (445)
T cd05803 151 IAEHIDKVLALVDVDVIKIRERNFKVAVDSVNGAGG------LLIPRLLEKLGCEVIVLNCEPTGLFPHTPEPLPENLTQ 224 (445)
T ss_pred HHHHHHHHHhhcccchhhhccCCCEEEEECCCCcHH------HHHHHHHHHcCCEEEEeCCcCCCCCCCCCCCChHHHHH
Confidence 45577777666531 11 23579999999988753 24677999999986433211 1122334
Q ss_pred HHHHhhcCCCceEEEEcCCC
Q 011290 158 IVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 158 l~~~~~~~~~d~IV~vGGDG 177 (489)
+.+.+...+.|..++.-|||
T Consensus 225 l~~~v~~~~adlgi~~D~Dg 244 (445)
T cd05803 225 LCAAVKESGADVGFAVDPDA 244 (445)
T ss_pred HHHHHHhcCCCEEEeeCCCC
Confidence 44444445677777777777
No 304
>PRK09065 glutamine amidotransferase; Provisional
Probab=32.93 E-value=1.3e+02 Score=29.28 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=32.6
Q ss_pred cchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011290 128 IFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 128 ~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~ 180 (489)
.|.+.+...|..++++++++......+. -++.+||+||+.||=.+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~~~~dgvvi~Gg~~~~~ 68 (237)
T PRK09065 22 DFPHWIRVALGLAEQPVVVVRVFAGEPL------PAPDDFAGVIITGSWAMVT 68 (237)
T ss_pred CHHHHHHHHhccCCceEEEEeccCCCCC------CChhhcCEEEEeCCCcccC
Confidence 4666777788888998887765442211 1345799999999987754
No 305
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=32.87 E-value=3.3e+02 Score=27.95 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=48.6
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T--~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
..+++.+|+.... -++ . +.+.++..+++.|.++..... ....+....+.++...+.|.|++.|....+..++..
T Consensus 160 ~~k~va~i~~d~~-~g~--~-~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~~~~~~~~~~~~k~ 235 (369)
T PRK15404 160 KPKRIAVLHDKQQ-YGE--G-LARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYYGGYHPEMGQILRQ 235 (369)
T ss_pred CCCEEEEEeCCCc-hhH--H-HHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEECCCchHHHHHHHH
Confidence 4578888876644 222 2 335788899999988653221 122345566667766789988766655556666665
Q ss_pred hhcC
Q 011290 186 LLER 189 (489)
Q Consensus 186 L~~~ 189 (489)
+-..
T Consensus 236 ~~~~ 239 (369)
T PRK15404 236 AREA 239 (369)
T ss_pred HHHC
Confidence 5543
No 306
>PRK09267 flavodoxin FldA; Validated
Probab=32.86 E-value=1.1e+02 Score=27.78 Aligned_cols=84 Identities=15% Similarity=0.082 Sum_probs=43.1
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG---GDGtl~EVvnGL 186 (489)
++++|++ .|..|..+++- +.+...|..+ +++++..+... ..++.+||.||++. ++|-+...+..+
T Consensus 2 mki~IiY--~S~tGnT~~vA-~~Ia~~l~~~--~~~~~~~~~~~-------~~~l~~~d~vi~g~pt~~~G~~~~~~~~f 69 (169)
T PRK09267 2 AKIGIFF--GSDTGNTEDIA-KMIQKKLGKD--VADVVDIAKAS-------KEDFEAYDLLILGIPTWGYGELQCDWDDF 69 (169)
T ss_pred CeEEEEE--ECCCChHHHHH-HHHHHHhCCC--ceEEEEhhhCC-------HhhHhhCCEEEEEecCcCCCCCCHHHHHH
Confidence 4788998 45555666543 5666666532 44554433211 12345789877663 456554443333
Q ss_pred hcCcCccccCCCcEEEecC
Q 011290 187 LEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (489)
+..-........+++++-.
T Consensus 70 l~~~~~~~l~~k~vaifg~ 88 (169)
T PRK09267 70 LPELEEIDFSGKKVALFGL 88 (169)
T ss_pred HHHHhcCCCCCCEEEEEec
Confidence 3211001112467777755
No 307
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=32.71 E-value=2.6e+02 Score=22.43 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=31.7
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL 162 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~ 162 (489)
+++.||..-..+.-.. -|-.+++.+|+..+++++.+.......+++.+.+.
T Consensus 8 ~~vvvf~k~~~~~~~C--p~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~ 58 (90)
T cd03028 8 NPVVLFMKGTPEEPRC--GFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEY 58 (90)
T ss_pred CCEEEEEcCCCCCCCC--cHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHH
Confidence 5688886522222122 25578999999999999888765444444444443
No 308
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=32.55 E-value=3.1e+02 Score=27.91 Aligned_cols=66 Identities=17% Similarity=0.309 Sum_probs=46.7
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEc
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vG 174 (489)
++.+-+.++++..+..-- .. +.+-++..+++.|..+-+..|.+ +..-.++.+.+...++|+||+.|
T Consensus 56 ~~s~~Ig~i~p~~~~~~~-~~-i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 56 GRTKTIGLVVPDITNPFF-AE-ILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CCCCEEEEEeCCCCCchH-HH-HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 355567777764444211 12 33578889999999998888887 55555666777777899999999
No 309
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.52 E-value=2.9e+02 Score=27.95 Aligned_cols=98 Identities=18% Similarity=0.144 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhhhhc----CCCcEE-EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHH
Q 011290 90 DSKRLWCEKLRDFIDSF----GRPKRL-YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKV 161 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~rpkr~-lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~ 161 (489)
+.++...+.+++.+... ++..++ .|.++ ...|...|.+.-....++.|+.++.+.-. .+.+..+.+++
T Consensus 15 ~iA~~i~~~l~~~i~~l~~~~g~~P~Laii~vg----~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 90 (287)
T PRK14176 15 ALAKKIEAEVRSGVERLKSNRGITPGLATILVG----DDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDS 90 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeEEEEEEC----CCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45666666666665533 322344 44444 44467789888899999999998776543 34455566666
Q ss_pred hhc-CCCceEEEEc---CCChHHHHHHHhhcCcC
Q 011290 162 LDL-SKYDGIVCVS---GDGILVEVVNGLLERED 191 (489)
Q Consensus 162 ~~~-~~~d~IV~vG---GDGtl~EVvnGL~~~~~ 191 (489)
+.. +..|+|++-= ..=.-.++++.+--.+|
T Consensus 91 LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KD 124 (287)
T PRK14176 91 LNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKD 124 (287)
T ss_pred HhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccc
Confidence 653 3567777642 22233455555544444
No 310
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=32.14 E-value=1.7e+02 Score=27.21 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=34.5
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
|-..+...|++.|+.++++..... ...+ +..-++|+||+.||.|..++
T Consensus 11 ft~~~~~~l~~~g~~~~~~~~~~~-~~~~----~~~~~~~~iilsgGp~~~~~ 58 (193)
T PRK08857 11 FTYNLYQYFCELGAQVKVVRNDEI-DIDG----IEALNPTHLVISPGPCTPNE 58 (193)
T ss_pred cHHHHHHHHHHCCCcEEEEECCCC-CHHH----HhhCCCCEEEEeCCCCChHH
Confidence 556788899999999888865422 2222 22235899999999998875
No 311
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=31.87 E-value=88 Score=37.91 Aligned_cols=103 Identities=14% Similarity=0.203 Sum_probs=59.3
Q ss_pred CcEEEEEEcCCCCCc--cccccchHhHHHHHHhCCCcE---EEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011290 109 PKRLYIFVNPFGGKK--IASKIFLDDVKPLLEDANIQF---TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (489)
Q Consensus 109 pkr~lviiNP~sG~~--~a~~~~~~~v~p~l~~a~i~~---~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVv 183 (489)
-.+++-|.|=..|=- +-..+-.+.+..+...-|..+ .-...+...+..++.+.+..-+.|++|++||||++.-+.
T Consensus 134 ~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ee~~~~~le~lkkl~Id~LVvIGGDgS~t~A~ 213 (1328)
T PTZ00468 134 SSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEEQMRASLEICEKLKLHGLVVIGGDDSNTNAA 213 (1328)
T ss_pred CCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHH
Confidence 347888887666532 222333345777777666321 111123344555555556555789999999999986432
Q ss_pred HHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 184 NGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 184 nGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
. |.+.-. +...++++--||. ==-||+..
T Consensus 214 ~-LaEy~~-~~g~~I~VIGIPK-----TIDNDL~g 241 (1328)
T PTZ00468 214 V-LAEYFK-RNSSSTVVVGCPK-----TIDGDLKN 241 (1328)
T ss_pred H-HHHHHH-hcCCCeeEEEEeE-----EEcCCCCC
Confidence 2 222100 0113688888998 55788874
No 312
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.77 E-value=3.9e+02 Score=26.95 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhhhhc----CCCcEEE-EEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHH
Q 011290 90 DSKRLWCEKLRDFIDSF----GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKV 161 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~rpkr~l-viiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~ 161 (489)
+.++.+.+.+++.+... ++..++. |.++ ...+...|.+.-....++.|++++.+.-. .+.+..+.+++
T Consensus 9 ~ia~~i~~~lk~~v~~l~~~~g~~P~Laii~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~ 84 (284)
T PRK14179 9 ALAQKMQAELAEKVAKLKEEKGIVPGLVVILVG----DNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIER 84 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCceEEEEEeC----CChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45666777777766543 2223443 4444 44466788888889999999998876543 24455556666
Q ss_pred hhc-CCCceEEEE---cCCChHHHHHHHhhcCcC
Q 011290 162 LDL-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (489)
Q Consensus 162 ~~~-~~~d~IV~v---GGDGtl~EVvnGL~~~~~ 191 (489)
+.. +..|+|++- -..=.-.++++.+--.+|
T Consensus 85 lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~KD 118 (284)
T PRK14179 85 YNQDPTWHGILVQLPLPKHINEEKILLAIDPKKD 118 (284)
T ss_pred HhCCCCCCEEEEcCCCCCCCCHHHHHhccCcccc
Confidence 643 356787764 112223345555544433
No 313
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=31.65 E-value=1.6e+02 Score=31.40 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE
Q 011290 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~ 147 (489)
...|.+.|.+.++..-+.+++.|++++..|.+. ..+.++|+..|+++..+
T Consensus 152 ~~~Y~~~l~~~id~~i~~~~~kVvvD~~~G~~~------~~~~~ll~~lG~~v~~~ 201 (443)
T PRK10887 152 AGRYIEFCKSTFPNELSLRGLKIVVDCANGATY------HIAPNVFRELGAEVIAI 201 (443)
T ss_pred HHHHHHHHHHhcCcccccCCCEEEEECCCchHH------HHHHHHHHHhCCeEEEE
Confidence 455777776665421133578999999888653 35677888889876544
No 314
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=31.60 E-value=1.7e+02 Score=23.78 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=39.1
Q ss_pred EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
..|+|+++|-||..- ...+...|...|.++-++.+... ||.|++=.+=+.-.+..+
T Consensus 2 i~~~~~kgG~Gkst~--~~~la~~~~~~~~~vl~~d~d~~--------------~d~viiD~p~~~~~~~~~ 57 (104)
T cd02042 2 IAVANQKGGVGKTTT--AVNLAAALARRGKRVLLIDLDPQ--------------YDYIIIDTPPSLGLLTRN 57 (104)
T ss_pred EEEEeCCCCcCHHHH--HHHHHHHHHhCCCcEEEEeCCCC--------------CCEEEEeCcCCCCHHHHH
Confidence 578999999998753 34677778888988888877764 787766554443333333
No 315
>PRK09701 D-allose transporter subunit; Provisional
Probab=31.55 E-value=2.1e+02 Score=28.50 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=42.8
Q ss_pred HhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++..+++.|+++.+..+. ...+..+..+.+...++|+||+.+.|.. ..+.+..+... .+|+-.+
T Consensus 44 ~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~~-------giPvV~~ 113 (311)
T PRK09701 44 KGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKK-------GIYLVNL 113 (311)
T ss_pred HHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC-------CCcEEEe
Confidence 56777888888888776433 2333445666676678999999998853 33445555432 5676555
No 316
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=31.46 E-value=2.3e+02 Score=21.45 Aligned_cols=59 Identities=10% Similarity=-0.001 Sum_probs=34.6
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGD 176 (489)
++.|+.-|... +-++++.+|++.+++++.+.......+.+-+.++.-...--.|.++|.
T Consensus 2 ~v~ly~~~~C~-------~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~ 60 (73)
T cd03027 2 RVTIYSRLGCE-------DCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEK 60 (73)
T ss_pred EEEEEecCCCh-------hHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 45666665442 346889999999999988876654444433333321222244555554
No 317
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=31.35 E-value=59 Score=27.18 Aligned_cols=26 Identities=19% Similarity=0.595 Sum_probs=23.2
Q ss_pred EeeEEecCCCHHHHHHHHHHHHHhhh
Q 011290 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (489)
.+.|.|.+.++++...|.++|+..+.
T Consensus 76 ~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 57899999999999999999988774
No 318
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=31.34 E-value=1.6e+02 Score=25.35 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=37.9
Q ss_pred hHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHH----HHHHhhcCcCccccCCCcEEEecC
Q 011290 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE----VVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 132 ~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E----VvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
.++.++...++.+.........-+.+|++.++..+.|.||+.. -|.+.. +.+.++.+ .++|+-++|.
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs-~~~~~~~lgSva~~v~~~------a~~pVLvv~~ 139 (144)
T PRK15118 69 ALTELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGH-HQDFWSKLMSSARQLINT------VHVDMLIVPL 139 (144)
T ss_pred HHHHHHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeC-cccHHHHHHHHHHHHHhh------CCCCEEEecC
Confidence 3455556677764322222223355677777667889777633 344322 33444444 3789988886
No 319
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.12 E-value=3.3e+02 Score=27.40 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=51.9
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE---eCChhHHHHHHHHhhc-CCCceEEEE---cCCChHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKVLDL-SKYDGIVCV---SGDGILV 180 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~---T~~~~ha~el~~~~~~-~~~d~IV~v---GGDGtl~ 180 (489)
+|+=..|.++ ...|...|.+......++.|++++.+. ...+.+..+.++++.. +..|+|++- -..-.-.
T Consensus 31 ~P~La~I~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~ 106 (282)
T PRK14180 31 TPKLVAIIVG----NDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKN 106 (282)
T ss_pred CCeEEEEEeC----CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHH
Confidence 3433345554 344667898888999999999998873 3345566667777753 356787764 2444555
Q ss_pred HHHHHhhcCcCc
Q 011290 181 EVVNGLLEREDW 192 (489)
Q Consensus 181 EVvnGL~~~~~~ 192 (489)
++++.+--.+|-
T Consensus 107 ~i~~~I~p~KDV 118 (282)
T PRK14180 107 NVIYSIKPEKDV 118 (282)
T ss_pred HHHhhcCccccc
Confidence 677766555443
No 320
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=31.02 E-value=3.2e+02 Score=27.99 Aligned_cols=91 Identities=18% Similarity=0.270 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEE
Q 011290 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIV 171 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV 171 (489)
.++-++.++..+ +.-|++.++|||..-.-. .. .++++...+.+|+++........++....++.+. ++.|.|
T Consensus 145 v~q~i~lik~~~---Pnak~Igv~Y~p~E~ns~--~l-~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~-g~~d~i- 216 (322)
T COG2984 145 VAQQIELIKALL---PNAKSIGVLYNPGEANSV--SL-VEELKKEARKAGLEVVEAAVTSVNDIPRAVQALL-GKVDVI- 216 (322)
T ss_pred HHHHHHHHHHhC---CCCeeEEEEeCCCCcccH--HH-HHHHHHHHHHCCCEEEEEecCcccccHHHHHHhc-CCCcEE-
Confidence 444445555554 556889999999774432 22 3689999999999887666666677666666665 567754
Q ss_pred EEcCCChHHHHHHHhhcCc
Q 011290 172 CVSGDGILVEVVNGLLERE 190 (489)
Q Consensus 172 ~vGGDGtl~EVvnGL~~~~ 190 (489)
.+-=|-|++-.++.|+...
T Consensus 217 ~~p~dn~i~s~~~~l~~~a 235 (322)
T COG2984 217 YIPTDNLIVSAIESLLQVA 235 (322)
T ss_pred EEecchHHHHHHHHHHHHH
Confidence 4567999999999988763
No 321
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=30.98 E-value=84 Score=31.04 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=28.1
Q ss_pred cEEEEEEcCCCCCccc-----cccchHhHHHHHHhCCCcE-EEEEeCCh
Q 011290 110 KRLYIFVNPFGGKKIA-----SKIFLDDVKPLLEDANIQF-TVQETTQQ 152 (489)
Q Consensus 110 kr~lviiNP~sG~~~a-----~~~~~~~v~p~l~~a~i~~-~v~~T~~~ 152 (489)
..+.|||||.+|.|.+ ...|...+..+=..+|+++ -.+.|.+.
T Consensus 31 ~~f~vIiNP~sGPG~~~~~~pd~~Y~~~i~~L~~~~nv~vlGYV~T~Yg 79 (253)
T PF12138_consen 31 VPFTVIINPNSGPGSAPDPWPDANYAAAIPRLNSYANVRVLGYVHTSYG 79 (253)
T ss_pred CcEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 4589999999999965 3346544444337778764 34555553
No 322
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=30.83 E-value=1.8e+02 Score=28.21 Aligned_cols=79 Identities=9% Similarity=0.124 Sum_probs=44.8
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh-------hHHHHHHHHhhc-CCCceEEEEcCCChHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-------LHAKEIVKVLDL-SKYDGIVCVSGDGILV 180 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-------~ha~el~~~~~~-~~~d~IV~vGGDGtl~ 180 (489)
.+++.+|+--. ....-.|.++++.+....++.+.+..++.. +...+.+.+... ...+.+.+||-++.+.
T Consensus 127 ~~~i~Li~~~r---~~~~~~~~~~L~~l~~~~~~~~~~~~s~~~~~~~~~~g~v~~~l~~~~~~~~~~~vyicGp~~mv~ 203 (253)
T cd06221 127 YGKVTLLYGAR---TPEDLLFKEELKEWAKRSDVEVILTVDRAEEGWTGNVGLVTDLLPELTLDPDNTVAIVCGPPIMMR 203 (253)
T ss_pred CCcEEEEEecC---ChHHcchHHHHHHHHhcCCeEEEEEeCCCCCCccCCccccchhHHhcCCCcCCcEEEEECCHHHHH
Confidence 34565554222 122335667777766554555655554322 122233333222 1346799999999999
Q ss_pred HHHHHhhcCc
Q 011290 181 EVVNGLLERE 190 (489)
Q Consensus 181 EVvnGL~~~~ 190 (489)
.+.+.|....
T Consensus 204 ~~~~~L~~~G 213 (253)
T cd06221 204 FVAKELLKLG 213 (253)
T ss_pred HHHHHHHHcC
Confidence 9999997763
No 323
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=30.76 E-value=1.1e+02 Score=29.79 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=47.0
Q ss_pred HhHHHHHHhCCC-cEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANI-QFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i-~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.+...++..+. +++.+.-.....+.++++.+...+.|+|.+-|-||.-.|-+..++++= .+...+|+-+.|.
T Consensus 5 ~~l~~~~~~~~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~i--k~~~~lPvilfP~ 78 (240)
T COG1646 5 KYLLEKLDWRGKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAI--KERTDLPVILFPG 78 (240)
T ss_pred HHHHHHhhhccceEEEEeCcccccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHH--HhhcCCCEEEecC
Confidence 344445554333 233332222245678888888789999999999998876666665541 1124799999998
No 324
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=30.71 E-value=2.4e+02 Score=25.39 Aligned_cols=57 Identities=25% Similarity=0.182 Sum_probs=40.3
Q ss_pred hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
.+-+..+|+.+|+++ +.+....-..|+++.+.....|+|+++|=||-=.+.+.++.+
T Consensus 29 akvia~~l~d~GfeV--i~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve 85 (143)
T COG2185 29 AKVIARALADAGFEV--INLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVE 85 (143)
T ss_pred hHHHHHHHHhCCceE--EecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHH
Confidence 467899999999864 444333334667777655788999999999976666665554
No 325
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=30.55 E-value=4.9e+02 Score=24.94 Aligned_cols=103 Identities=12% Similarity=0.044 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHHhhhhcC-CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEE-EEEeC----ChhHHHHHH
Q 011290 86 PLSEDSKRLWCEKLRDFIDSFG-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT-VQETT----QQLHAKEIV 159 (489)
Q Consensus 86 ~~~~~~~~~w~~~l~~~~~~~~-rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~-v~~T~----~~~ha~el~ 159 (489)
..+.+......+.|.+.+...+ .++++.+|..+......+...+ +-.+..|+..++... ++.+. ....+.+.+
T Consensus 105 ~d~~~~g~~~~~~l~~~~~~~g~~~~~i~~i~~~~~~~~~~~~R~-~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (289)
T cd01540 105 MSATKIGEQVGEAIADEMKKRGWDPKEVGALRITYDELDTAKPRT-DGALEALKAPGFPEANIFQAPQKTTDTEGAFDAA 183 (289)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCcchhhHH-HHHHHHHhcCCCCcceEecccccCcchhhHHHHH
Confidence 3344445555555555443222 3467777654322222223333 356777777777532 22221 134455555
Q ss_pred HHhhcC--CCce-EEEEcCCChHHHHHHHhhcC
Q 011290 160 KVLDLS--KYDG-IVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 160 ~~~~~~--~~d~-IV~vGGDGtl~EVvnGL~~~ 189 (489)
+++-.. ++++ .|++.+|.+...+++.|-+.
T Consensus 184 ~~~l~~~~~~~~~~i~~~~d~~a~g~~~al~~~ 216 (289)
T cd01540 184 ASTLTKNPNVKNWIIYGLNDETVLGAVRATEQS 216 (289)
T ss_pred HHHHHhCCCcCeeEEEeCCcHHHHHHHHHHHHc
Confidence 555322 3453 68889999999999988775
No 326
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=30.52 E-value=3e+02 Score=25.99 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=37.5
Q ss_pred HhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhh
Q 011290 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~ 187 (489)
+.++..+++.|..+.+..+.+ .....++.+.+...+.|+||+++.+.. .++++-|.
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~-~~~~~~l~ 75 (268)
T cd06298 19 RGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGKIS-EEHREEFK 75 (268)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCc-HHHHHHHh
Confidence 467778888888887776653 333345666665678999999976543 34555543
No 327
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=30.36 E-value=2.6e+02 Score=27.45 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=42.1
Q ss_pred HhHHHHHHhCCCcEEEE-EeC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQ-ETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~-~T~-~~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++..+++.|+.+.++ .+. ......+..+.+...++|+||+.+.+-. +.+.+..+... .+|+-.+
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~v 87 (298)
T cd06302 19 EGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAREA-------GIKVVTH 87 (298)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHHC-------CCeEEEE
Confidence 56777888888887765 333 3333445566665568999999987743 34555555432 5676655
No 328
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=30.26 E-value=1.6e+02 Score=21.32 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=23.8
Q ss_pred hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHh
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL 162 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~ 162 (489)
-++++.+|+..|++++++.-+....+.+.+++.
T Consensus 12 C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~ 44 (60)
T PF00462_consen 12 CKKAKEFLDEKGIPYEEVDVDEDEEAREELKEL 44 (60)
T ss_dssp HHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeeeEcccccchhHHHHHHHH
Confidence 367899999999999988766654555444444
No 329
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=30.25 E-value=2.5e+02 Score=30.07 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhhhc-CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC------------hhHHHHH
Q 011290 92 KRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ------------QLHAKEI 158 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~-~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~------------~~ha~el 158 (489)
...|.+.|.+.++.. -+.+++-|++.+..|.+. ..+.++|+..|+++.....+. +.+..++
T Consensus 153 ~~~Y~~~l~~~~~~~~i~~~~~kivvd~~~G~~~------~~~~~il~~lg~~v~~~~~~~dg~F~~~~p~p~~~~l~~l 226 (461)
T cd05800 153 KPDYLEALRSLVDLEAIREAGLKVVVDPMYGAGA------GYLEELLRGAGVDVEEIRAERDPLFGGIPPEPIEKNLGEL 226 (461)
T ss_pred HHHHHHHHHHHhChhhhhcCCceEEEeCCCCCcH------HHHHHHHHHcCCCEEEeeCCcCCCCCCCCCCCCHHHHHHH
Confidence 455777776665321 123578899999888653 357788999998775442211 1234445
Q ss_pred HHHhhcCCCceEEEEcCCC
Q 011290 159 VKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 159 ~~~~~~~~~d~IV~vGGDG 177 (489)
.+.+...+.|..++.=|||
T Consensus 227 ~~~v~~~~ad~Gia~D~Dg 245 (461)
T cd05800 227 AEAVKEGGADLGLATDGDA 245 (461)
T ss_pred HHHHHhcCCCEEEEECCCC
Confidence 4444444566666665555
No 330
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=30.21 E-value=1.5e+02 Score=27.82 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=35.8
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EV 182 (489)
|-..+...|++.|+++.++..... ... ++...++|+||+.||=|-.++.
T Consensus 11 ft~nl~~~l~~~g~~v~v~~~~~~-~~~----~~~~~~~d~iIlsgGP~~p~~~ 59 (195)
T PRK07649 11 FTFNLVQFLGELGQELVVKRNDEV-TIS----DIENMKPDFLMISPGPCSPNEA 59 (195)
T ss_pred cHHHHHHHHHHCCCcEEEEeCCCC-CHH----HHhhCCCCEEEECCCCCChHhC
Confidence 556788999999999988875422 122 2233479999999999998774
No 331
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=30.07 E-value=3.4e+02 Score=25.56 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=36.1
Q ss_pred hHhHHHHHHhCCCcEEEEEeCCh--hHHHHHHHHhhcCCCceEEEEcCCChH
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~--~ha~el~~~~~~~~~d~IV~vGGDGtl 179 (489)
.+.++..+++.|+.+.+..++.. ....++.+.+...+.|+|++.+-+-.-
T Consensus 18 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~ 69 (264)
T cd01574 18 LAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAPLDDA 69 (264)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCCCCCh
Confidence 35788888888998888877543 334566677766789999998865443
No 332
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=30.00 E-value=2.3e+02 Score=30.27 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE
Q 011290 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~ 147 (489)
...+.+.|.+.+... +..+.-|++++..|.+. ..+.++|+..|+++..+
T Consensus 154 ~~~Y~~~l~~~~~~~-~~~~~kVvvD~~nG~~~------~~~~~ll~~lg~~v~~i 202 (443)
T PRK14320 154 IDEYIESIHSRFAKF-VNYKGKVVVDCAHGAAS------HNFEALLDKFGINYVSI 202 (443)
T ss_pred HHHHHHHHHHHHHhh-ccCCCEEEEECCCchHH------HHHHHHHHHcCCcEEEE
Confidence 345666665554311 12235899999888653 35777888889876554
No 333
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.99 E-value=3e+02 Score=27.73 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhhhc---CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHhh
Q 011290 90 DSKRLWCEKLRDFIDSF---GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLD 163 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~---~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~~ 163 (489)
+.++...+.+++.+... ++..++.+|. .|...+...|.+.-.+..++.|++++.+.-. .+.+..+.++++.
T Consensus 10 ~vA~~i~~~l~~~v~~l~~~g~~P~Laii~---vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 86 (284)
T PRK14190 10 EVAKEKREQLKEEVVKLKEQGIVPGLAVIL---VGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLN 86 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEE---eCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34555566666655432 3333454433 2455567789888899999999999887533 2344555566664
Q ss_pred c-CCCceEEEEc---CCChHHHHHHHhhcCc
Q 011290 164 L-SKYDGIVCVS---GDGILVEVVNGLLERE 190 (489)
Q Consensus 164 ~-~~~d~IV~vG---GDGtl~EVvnGL~~~~ 190 (489)
. ...|+|++-= ..=.-.++++.+--.+
T Consensus 87 ~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~K 117 (284)
T PRK14190 87 ADPRINGILVQLPLPKHIDEKAVIERISPEK 117 (284)
T ss_pred CCCCCCEEEEeCCCCCCCCHHHHHhcCCccc
Confidence 3 3467777641 2223344555444333
No 334
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=29.93 E-value=2.6e+02 Score=28.45 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=47.0
Q ss_pred hhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc
Q 011290 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 103 ~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG 174 (489)
+......+++.|+++..+|++.-. +. ++++.+++++|.++.++.....+-++- ..+ +.|..|.+|
T Consensus 206 I~ka~~A~~vGIlvgTl~~q~~~~-~~-~~l~~ll~~~gkk~y~i~~~~in~~kL--~nf---~iD~fV~~a 270 (308)
T TIGR03682 206 ISKALDAKKFGILVSTKKGQRRPE-LA-EELKKLLEELGKEALLILLDNISPDQL--RNL---DFDAYVNTA 270 (308)
T ss_pred HHHHhhCCeEEEEEEccCcCCCHH-HH-HHHHHHHHHcCCeEEEEEeCCCCHHHH--hcC---CcCEEEEcc
Confidence 444455688999999999998754 45 689999999999988877777665431 222 477766554
No 335
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.88 E-value=4.2e+02 Score=26.73 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhhhhc----CCCcEEE-EEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHH
Q 011290 90 DSKRLWCEKLRDFIDSF----GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKV 161 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~rpkr~l-viiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~ 161 (489)
+.++.+.+.+++.+... ++..++. |.+ |...+...|.+.-....++.|+.++.+.- ..+.+..+.+++
T Consensus 10 ~va~~i~~~lk~~v~~l~~~~~~~P~Laii~v----g~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~ 85 (285)
T PRK10792 10 TIAQQVRSEVAQKVQARVAAGLRAPGLAVVLV----GSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDE 85 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCceEEEEEe----CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45666677777665543 3322443 444 44556778988889999999999877653 345556666667
Q ss_pred hhc-CCCceEEEEc---CCChHHHHHHHhhcCcC
Q 011290 162 LDL-SKYDGIVCVS---GDGILVEVVNGLLERED 191 (489)
Q Consensus 162 ~~~-~~~d~IV~vG---GDGtl~EVvnGL~~~~~ 191 (489)
+.. +..|+|++-= ..=.-.++++.+--.+|
T Consensus 86 lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KD 119 (285)
T PRK10792 86 LNADPTIDGILVQLPLPAHIDNVKVLERIHPDKD 119 (285)
T ss_pred HhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccc
Confidence 653 3567877642 23333456665544443
No 336
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=29.84 E-value=3e+02 Score=25.93 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=42.2
Q ss_pred HhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+-++..++..|+.+.+..+... ....++.+.+...+.|+|++++-+-+ .+.++-+... .+|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~~~~~-------~ipvv~~ 84 (268)
T cd01575 19 QGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHT-ERTRQLLRAA-------GIPVVEI 84 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHHhc-------CCCEEEE
Confidence 4567778888888777666432 22345666666678999999998765 3455544433 5665544
No 337
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=29.61 E-value=2.7e+02 Score=28.03 Aligned_cols=103 Identities=15% Similarity=0.142 Sum_probs=58.0
Q ss_pred eEEecCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHh--CCCcEEEEEe--CCh-hHH
Q 011290 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLED--ANIQFTVQET--TQQ-LHA 155 (489)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~--a~i~~~v~~T--~~~-~ha 155 (489)
.++|+..... ..+...+-+++......|++.++.-. ..-++. . .+.++..|++ .|+++..... ... .+.
T Consensus 117 ~~~fr~~~~~--~~~~~~l~~~~~~~~~~k~v~i~~~~-~~~g~~--~-~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~ 190 (342)
T cd06329 117 FWHFRTDANT--DMKMEALASYIKKQPDGKKVYLINQD-YSWGQD--V-AAAFKAMLAAKRPDIQIVGEDLHPLGKVKDF 190 (342)
T ss_pred ceEEEecCCh--HHHHHHHHHHHHhcccCceEEEEeCC-hHHHHH--H-HHHHHHHHHhhcCCcEEeceeccCCCCCCch
Confidence 4566543221 12233333444333345778776533 332322 2 3578889998 8876643321 122 445
Q ss_pred HHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcC
Q 011290 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 156 ~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
..++.++...+.|.|++++..+..-.++..+...
T Consensus 191 ~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~ 224 (342)
T cd06329 191 SPYVAKIKASGADTVITGNWGNDLLLLVKQAADA 224 (342)
T ss_pred HHHHHHHHHcCCCEEEEcccCchHHHHHHHHHHc
Confidence 5666777667899988877665666777777665
No 338
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.49 E-value=4.4e+02 Score=26.58 Aligned_cols=97 Identities=22% Similarity=0.251 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhhhhc----CCCcEEE-EEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHh
Q 011290 91 SKRLWCEKLRDFIDSF----GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVL 162 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~----~rpkr~l-viiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~ 162 (489)
.++...+.+++.+... ++..++. |++ |...+...|.+.-....++.|++++.+.- ..+.+..+.++++
T Consensus 9 iA~~i~~~l~~~v~~l~~~~g~~P~Laii~v----g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~l 84 (286)
T PRK14184 9 TAATIREELKTEVAALTARHGRAPGLAVILV----GEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAEL 84 (286)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCEEEEEEe----CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555555554322 3333444 444 44456678888888999999999988753 2345556666776
Q ss_pred hc-CCCceEEEEc---CCChHHHHHHHhhcCcC
Q 011290 163 DL-SKYDGIVCVS---GDGILVEVVNGLLERED 191 (489)
Q Consensus 163 ~~-~~~d~IV~vG---GDGtl~EVvnGL~~~~~ 191 (489)
.. +..|+|++-= ..=.-.++++.+--.+|
T Consensus 85 N~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KD 117 (286)
T PRK14184 85 NARPDIDGILLQLPLPKGLDSQRCLELIDPAKD 117 (286)
T ss_pred hCCCcCceEEEecCCCCCCCHHHHHhccCcccC
Confidence 53 3567777642 22233455555544444
No 339
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=29.32 E-value=58 Score=26.56 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.3
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~ 103 (489)
+.+.|...++++++.|+++|++.+
T Consensus 78 r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 78 RTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred ceEEEECCCHHHHHHHHHHHHhhC
Confidence 568888899999999999998753
No 340
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=29.23 E-value=1.7e+02 Score=28.36 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=34.0
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcC
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGG 175 (489)
+-++..+++.|.++.+..+.......+..+.+...+.|+||+++-
T Consensus 22 ~gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~~~vdgiI~~~~ 66 (265)
T cd06354 22 EGLERAAKELGIEYKYVESKSDADYEPNLEQLADAGYDLIVGVGF 66 (265)
T ss_pred HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHhCCCCEEEEcCc
Confidence 467788888998888876665555556677776678999999864
No 341
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=29.13 E-value=71 Score=24.93 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=31.2
Q ss_pred hHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011290 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 132 ~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EV 182 (489)
.+...|..++++++++......... .....++|+|++.||.+..++.
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~d~lii~g~~~~~~~~ 62 (115)
T cd01653 16 SPLDALREAGAEVDVVSPDGGPVES----DVDLDDYDGLILPGGPGTPDDL 62 (115)
T ss_pred HHHHHHHHCCCeEEEEcCCCCceec----cCChhccCEEEECCCCCchhhh
Confidence 5667788888877776543321111 1234689999999999887754
No 342
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=29.10 E-value=1.4e+02 Score=32.46 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=29.6
Q ss_pred EEEcCCCCCccc------cccchHhHHHHHHhCC-CcEEEEEeCChh-HHHHHHHHhhcCCCceEEE
Q 011290 114 IFVNPFGGKKIA------SKIFLDDVKPLLEDAN-IQFTVQETTQQL-HAKEIVKVLDLSKYDGIVC 172 (489)
Q Consensus 114 viiNP~sG~~~a------~~~~~~~v~p~l~~a~-i~~~v~~T~~~~-ha~el~~~~~~~~~d~IV~ 172 (489)
+||||....+.+ ..++...+...|+.+| .+++++...... ...++.+.+...++|.|.+
T Consensus 3 lli~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~pdvVgi 69 (497)
T TIGR02026 3 LILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHCPDLVLI 69 (497)
T ss_pred EEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcCcCEEEE
Confidence 567775443322 2234445666777777 566665432221 1223444444446664444
No 343
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=28.91 E-value=2.7e+02 Score=29.84 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---------C--ChhHHHHHH
Q 011290 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---------T--QQLHAKEIV 159 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---------~--~~~ha~el~ 159 (489)
....|.+.|.+.++. .+-+++-|++.|..|.+. ..+.++|+..|+++..... + .+....++.
T Consensus 146 ~~~~Y~~~l~~~i~~-~~~~~lkIvvD~~~G~~~------~~~~~ll~~lG~~v~~l~~~~~~~~~~~~~~~~~~l~~l~ 218 (459)
T cd03088 146 AADAYIARYTDFFGA-GALKGLRIGVYQHSSVGR------DLLVRILEALGAEVVPLGRSDTFIPVDTEAVRPEDRALAA 218 (459)
T ss_pred HHHHHHHHHHHHhCc-cccCCCEEEEECCCCCHH------HHHHHHHHHcCCeEEEeCCCCCCCCCCCCcCCHHHHHHHH
Confidence 355677777666542 222478999999888652 3577889998987654320 0 112223343
Q ss_pred HHhhcCCCceEEEEcCCC
Q 011290 160 KVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 160 ~~~~~~~~d~IV~vGGDG 177 (489)
+.+...+.|..++.-|||
T Consensus 219 ~~v~~~~adlGia~D~Dg 236 (459)
T cd03088 219 AWAAEHGLDAIVSTDGDG 236 (459)
T ss_pred HHHHhcCCCEEEEeCCCC
Confidence 444445678888888887
No 344
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.86 E-value=3.6e+02 Score=27.15 Aligned_cols=98 Identities=19% Similarity=0.149 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhc-CC
Q 011290 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDL-SK 166 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~-~~ 166 (489)
.++.-.+.+++.+...++..++.+|. .|...|...|.+.-....++.|++++.+.- ..+.+..+.++++.. +.
T Consensus 8 ~a~~i~~~~~~~v~~lg~~P~Laii~---vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~ 84 (279)
T PRK14178 8 VSEKRLELLKEEIIESGLYPRLATVI---VGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPD 84 (279)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEE---eCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 45555556666665545444554433 244556778988889999999999877643 233445555666643 35
Q ss_pred CceEEEEc---CCChHHHHHHHhhcCcC
Q 011290 167 YDGIVCVS---GDGILVEVVNGLLERED 191 (489)
Q Consensus 167 ~d~IV~vG---GDGtl~EVvnGL~~~~~ 191 (489)
.|+|++-= ..=.-.++++.+--.+|
T Consensus 85 V~GIlvqlPLp~~i~~~~v~~~I~p~KD 112 (279)
T PRK14178 85 INGILVQLPLPKGVDTERVIAAILPEKD 112 (279)
T ss_pred CCeEEEcCCCCCCCCHHHHHhccCcccC
Confidence 67777642 23334456665544443
No 345
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=28.83 E-value=2.9e+02 Score=29.62 Aligned_cols=82 Identities=11% Similarity=0.122 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC----------C-----hhHHH
Q 011290 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----------Q-----QLHAK 156 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~----------~-----~~ha~ 156 (489)
...|.+.|.+.++. .+-+++-|+++|..|.+.. +...+.++|+..|++++++... . +.+..
T Consensus 152 ~~~Yi~~l~~~id~-~~~~~lkVvvD~~~G~~~~---~~~~l~~~l~~lG~~v~v~~~~~~pdg~F~~~~p~P~~~~~l~ 227 (456)
T PRK15414 152 RDAYVDHLFGYINV-KNLTPLKLVINSGNGAAGP---VVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRD 227 (456)
T ss_pred HHHHHHHHHHhccc-ccCCCCEEEEECCCCcchh---hHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCCCCCCHHHHH
Confidence 45677777666632 1125789999999987642 2234445588888865543211 1 12333
Q ss_pred HHHHHhhcCCCceEEEEcCCC
Q 011290 157 EIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 157 el~~~~~~~~~d~IV~vGGDG 177 (489)
++.+.+...++|..++.=|||
T Consensus 228 ~l~~~v~~~~adlGia~DgDa 248 (456)
T PRK15414 228 DTRNAVIKHGADMGIAFDGDF 248 (456)
T ss_pred HHHHHHHHcCCCEEEEECCCc
Confidence 344444445667777666666
No 346
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=28.64 E-value=1.1e+02 Score=22.51 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=32.0
Q ss_pred hHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011290 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 132 ~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EV 182 (489)
.....+...++.++++......... .....++|.||+.||..+....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~lii~g~~~~~~~~ 62 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVES----DVDLDDYDGLILPGGPGTPDDL 62 (92)
T ss_pred cHHHHHHhCCCEEEEEeCCCCcccc----cCCcccCCEEEECCCCcchhhh
Confidence 4666788888877776544432221 2334689999999999998654
No 347
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=28.52 E-value=1.3e+02 Score=36.49 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=34.2
Q ss_pred HHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCc----cccCCCcEEEecCcCCCCccccccee
Q 011290 159 VKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDW----NDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 159 ~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~----~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.+.+...+.|++|++|||||+.-. +-|.+.-.. .....+++--||. ==-|++..
T Consensus 793 ~~~L~~~~Id~LVvIGGDgS~t~A-~~Lae~~~~~~~~~~~~gi~VIgVPk-----TIDNDl~~ 850 (1328)
T PTZ00468 793 SQLLSFFNMRAIAIVGNSEAATFG-ASLSEQLICMSLNGMKSEIPVVFVPV-----CLENSISH 850 (1328)
T ss_pred HHHHHHcCCCEEEEeCCchHHHHH-HHHHHHHhhhccccccCCCcEEEeCc-----cccCCCCC
Confidence 344444578999999999998743 223221000 0113689999998 55688876
No 348
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=28.50 E-value=2.2e+02 Score=30.36 Aligned_cols=78 Identities=19% Similarity=0.174 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC----------hhHHHHHHHH
Q 011290 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKV 161 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~----------~~ha~el~~~ 161 (489)
...|.+.|.+.+... .+++.|++.+..|.+. ..+.++|+..|+++..+..+. +.+..++.+.
T Consensus 156 ~~~Y~~~l~~~i~~~--~~~lkvvvD~~nG~~~------~~~~~ll~~lg~~v~~in~~~dg~~~~~~~~~~~~~~l~~~ 227 (448)
T PRK14316 156 LRKYLQFLKSTIDED--LSGLKVALDCANGATS------SLAPRLFADLGADVTVIGTSPDGLNINDGVGSTHPEALQEL 227 (448)
T ss_pred HHHHHHHHHHhcCcc--cCCCEEEEECCCchhh------HHHHHHHHHcCCeEEEEccCCCCCCCCCCCCCCCHHHHHHH
Confidence 345777776666421 2578999999888653 357788888898876653321 1223334333
Q ss_pred hhcCCCceEEEEcCCC
Q 011290 162 LDLSKYDGIVCVSGDG 177 (489)
Q Consensus 162 ~~~~~~d~IV~vGGDG 177 (489)
....++|.-++.-|||
T Consensus 228 v~~~~adlGia~DgDa 243 (448)
T PRK14316 228 VVEKGADLGLAFDGDA 243 (448)
T ss_pred HhhcCCCEEEEEcCCC
Confidence 3334556666666665
No 349
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=28.37 E-value=5e+02 Score=25.62 Aligned_cols=67 Identities=10% Similarity=0.212 Sum_probs=38.2
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCC
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGD 176 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGD 176 (489)
+.+.+.|++ |.-..---..++ +.++..+++.|..+.+..+.. .....++.+.+...+.|+||+++.+
T Consensus 58 ~~~~Igvv~-~~~~~~f~~~l~-~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 125 (329)
T TIGR01481 58 RTTTVGVII-PDISNIYYAELA-RGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGGT 125 (329)
T ss_pred CCCEEEEEe-CCCCchhHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 444566666 432211112222 456677777888777665543 2233455566655789999998754
No 350
>PRK10116 universal stress protein UspC; Provisional
Probab=28.32 E-value=2.3e+02 Score=24.16 Aligned_cols=66 Identities=15% Similarity=0.292 Sum_probs=36.5
Q ss_pred HHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCC--ChHHHHH---HHhhcCcCccccCCCcEEEecC
Q 011290 133 VKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD--GILVEVV---NGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 133 v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGD--Gtl~EVv---nGL~~~~~~~~~~~~plgiIP~ 205 (489)
++.+....+++..........-+..+.+.++..++|.||+ |-- +.+..+. +.++.+ .++|+-++|.
T Consensus 69 l~~~~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~-g~~~~~~~~~~~s~a~~v~~~------~~~pVLvv~~ 139 (142)
T PRK10116 69 LDKLIQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVIC-GNHNHSFFSRASCSAKRVIAS------SEVDVLLVPL 139 (142)
T ss_pred HHHHHHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEE-cCCcchHHHHHHHHHHHHHhc------CCCCEEEEeC
Confidence 3444455666543222222233456666666668887665 433 3455543 345544 3789999886
No 351
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=28.25 E-value=4.8e+02 Score=24.77 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=47.3
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+..+++.++..+.... +...+ +.++..+++.|+++.........+..+.++++. .+.|+|+ +.+|.+...++..+
T Consensus 129 ~g~~~i~~l~~~~~~~--~~~r~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~dai~-~~~d~~a~~~~~~~ 203 (281)
T cd06325 129 PDAKTVGVLYNPSEAN--SVVQV-KELKKAAAKLGIEVVEATVSSSNDVQQAAQSLA-GKVDAIY-VPTDNTVASAMEAV 203 (281)
T ss_pred CCCcEEEEEeCCCCcc--HHHHH-HHHHHHHHhCCCEEEEEecCCHHHHHHHHHHhc-ccCCEEE-EcCchhHHhHHHHH
Confidence 4567888887665422 22222 567777888888654322233444555666653 3467555 56788888888777
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
.+.
T Consensus 204 ~~~ 206 (281)
T cd06325 204 VKV 206 (281)
T ss_pred HHH
Confidence 664
No 352
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.20 E-value=4.5e+02 Score=26.70 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhhhhc---C-CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHH
Q 011290 89 EDSKRLWCEKLRDFIDSF---G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKV 161 (489)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~---~-rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~ 161 (489)
.+.++.+.+.+++.+... + +|+=..|.++ ...+...|.+.-....++.|++++.+.-. .+.+..+.+++
T Consensus 10 k~iA~~i~~~lk~~i~~l~~~g~~P~LaiI~vg----~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~ 85 (301)
T PRK14194 10 KAAAARVLAQVREDVRTLKAAGIEPALAVILVG----NDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAE 85 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeC----CChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345677777777776543 2 3433345554 34466778888888999999999877653 34445555666
Q ss_pred hhc-CCCceEEEEc---CCChHHHHHHHhhcCcC
Q 011290 162 LDL-SKYDGIVCVS---GDGILVEVVNGLLERED 191 (489)
Q Consensus 162 ~~~-~~~d~IV~vG---GDGtl~EVvnGL~~~~~ 191 (489)
+.. +..|+|++-= ..-.-.++++.+--.+|
T Consensus 86 lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KD 119 (301)
T PRK14194 86 LNADPSVNGILLQLPLPAHIDEARVLQAINPLKD 119 (301)
T ss_pred HcCCCCCCeEEEeCCCCCCCCHHHHHhccCchhc
Confidence 643 3567777641 23333456665554444
No 353
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=28.12 E-value=2.6e+02 Score=27.64 Aligned_cols=70 Identities=9% Similarity=0.160 Sum_probs=42.0
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt 178 (489)
++.+.+.|+++..+.. --..+ .+-++..+++.|..+.+..+.. .....+..+.+...+.|+||+.+.+..
T Consensus 54 ~~~~~Igvi~~~~~~~-~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 54 NQTRTIGMLITASTNP-FYSEL-VRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETH 124 (327)
T ss_pred CCCCeEEEEeCCCCCC-cHHHH-HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 3455677776432211 11222 3467778888888877766643 222335556665578999999987754
No 354
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.08 E-value=2.2e+02 Score=27.22 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=40.0
Q ss_pred HhHHHHHHh--CCCcEEEEEeCChh-HHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLED--ANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~--a~i~~~v~~T~~~~-ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+-++..++. .+..+.+..++... .-.++.+.+...+.|+||+.+.|.. ..+++..+.++ .+|+-.+-.
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~~~~~-------~ipvv~~~~ 90 (271)
T cd06321 19 KGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRAQAA-------GIVVVAVDV 90 (271)
T ss_pred HHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHHHHHHHHC-------CCeEEEecC
Confidence 456677777 44444444343221 1224445555568999999988754 45666665543 577777644
No 355
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=27.68 E-value=2.2e+02 Score=27.58 Aligned_cols=58 Identities=14% Similarity=0.035 Sum_probs=41.1
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHH------------hhcCCCceEEEEcCCChHHHHHHHhhcC
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKV------------LDLSKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~------------~~~~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
.+++.+++ +|-.++|+-.+-..+..++++. -++.+++.|+++-+|--+|+-+-.....
T Consensus 39 RK~~~Ll~-~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~I~~~a~~ 108 (223)
T PRK05562 39 IKGKTFLK-KGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNKIRKHCDR 108 (223)
T ss_pred HHHHHHHh-CCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHHHHHHHHH
Confidence 46766555 7788888866655555555431 2356788999999999999988887764
No 356
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=27.63 E-value=4.7e+02 Score=27.38 Aligned_cols=100 Identities=11% Similarity=0.119 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHhhhhc----CCCcEE-EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE---eCChhHHHHHHH
Q 011290 89 EDSKRLWCEKLRDFIDSF----GRPKRL-YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVK 160 (489)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~----~rpkr~-lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~---T~~~~ha~el~~ 160 (489)
.+.++...+.|++.+..+ ++..++ .|.++ ...+...|.+.-+...++.|++++.+. +..+.+..+.++
T Consensus 79 k~iA~~i~~~lk~~v~~lk~~~g~~P~LaiIlvG----~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~ 154 (364)
T PLN02616 79 KAVAKKIRDEITIEVSRMKESIGVVPGLAVILVG----DRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFIS 154 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeC----CChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 445677777777765432 333344 44444 444667898888999999999987765 233334445566
Q ss_pred Hhhc-CCCceEEEEc---CCChHHHHHHHhhcCcCc
Q 011290 161 VLDL-SKYDGIVCVS---GDGILVEVVNGLLEREDW 192 (489)
Q Consensus 161 ~~~~-~~~d~IV~vG---GDGtl~EVvnGL~~~~~~ 192 (489)
++.. +..|+|++-= ..=.-.++++.+--.+|-
T Consensus 155 ~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~KDV 190 (364)
T PLN02616 155 GFNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDV 190 (364)
T ss_pred HHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCc
Confidence 6643 3467877642 233334566666555443
No 357
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=27.54 E-value=5.9e+02 Score=25.31 Aligned_cols=78 Identities=17% Similarity=0.059 Sum_probs=50.4
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC----hhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~----~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVv 183 (489)
.-+++.+++.-... + .. ..+.++..+++.|+.+...++-. ..+...+++++...+.|.||+.+.......++
T Consensus 159 ~~~~v~~l~~~~~~-g--~~-~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~~~~~~~~~ 234 (348)
T cd06350 159 GWTWVGLVYSDDDY-G--RS-GLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFGDEDDALRLF 234 (348)
T ss_pred CCeEEEEEEecchh-H--HH-HHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEeCcHHHHHHH
Confidence 35677777754331 2 22 23577888999998875544332 34677777888767778888877666666777
Q ss_pred HHhhcC
Q 011290 184 NGLLER 189 (489)
Q Consensus 184 nGL~~~ 189 (489)
..+.+.
T Consensus 235 ~~a~~~ 240 (348)
T cd06350 235 CEAYKL 240 (348)
T ss_pred HHHHHh
Confidence 666554
No 358
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=27.43 E-value=6.1e+02 Score=26.16 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=39.8
Q ss_pred HhHHHHHHhCCCcEEEEEeC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcC
Q 011290 131 DDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~--~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
+.+...|++.|+++...... ...+...+++++.. +.|.|+++|-......++..+.+.
T Consensus 166 ~~~~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~-~~~vIi~~~~~~~~~~i~~qa~~~ 225 (399)
T cd06384 166 EGVFLALQEENANVSAHPYHIEKNSDIIEIIQFIKQ-NGRIVYICGPLETFLEIMLQAQRE 225 (399)
T ss_pred HHHHHHHHhcCceEEEEEEeccchhhHHHHHHHHhh-cccEEEEeCCchHHHHHHHHHHHc
Confidence 44666778888877654322 24456677788864 788888877777777777766554
No 359
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=27.40 E-value=1.2e+02 Score=28.16 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=34.9
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh---------hH---HHHHHHHhhcCCCceEEEEcCC
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ---------LH---AKEIVKVLDLSKYDGIVCVSGD 176 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~---------~h---a~el~~~~~~~~~d~IV~vGGD 176 (489)
.||++|++.|..-. .+.. ....+|+.+++++++...+.. |- +..-..++....||.|++.||.
T Consensus 2 ~~~~~il~~~g~~~---~e~~--~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~ 76 (196)
T PRK11574 2 SASALVCLAPGSEE---TEAV--TTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGI 76 (196)
T ss_pred CceEEEEeCCCcch---hhHh--HHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCC
Confidence 36788888775521 2222 345677777877666433211 00 0001122222479999999996
Q ss_pred Ch
Q 011290 177 GI 178 (489)
Q Consensus 177 Gt 178 (489)
+.
T Consensus 77 ~~ 78 (196)
T PRK11574 77 KG 78 (196)
T ss_pred ch
Confidence 53
No 360
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=27.27 E-value=3.5e+02 Score=24.63 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=38.2
Q ss_pred HhHHHHHHhCCCcEEEEE--eCChhHHHHHHHHh-hcCCCceEEEEcCCCh-----HHHHHHHhhcC
Q 011290 131 DDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVL-DLSKYDGIVCVSGDGI-----LVEVVNGLLER 189 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~--T~~~~ha~el~~~~-~~~~~d~IV~vGGDGt-----l~EVvnGL~~~ 189 (489)
..++.+|++.|+++..+. .+..+...+.++++ +..++|.|++.||=|. ..|++..++++
T Consensus 25 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~l~~~ 91 (163)
T TIGR02667 25 QYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEPLFDK 91 (163)
T ss_pred HHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHHHHCC
Confidence 468888999998765443 34444444444444 2357999999999663 45666666555
No 361
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=27.27 E-value=1.3e+02 Score=29.30 Aligned_cols=53 Identities=21% Similarity=0.151 Sum_probs=33.1
Q ss_pred EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011290 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDG 177 (489)
.|+.=|-+.. +..+...|+.+|+++.++..... .....++++||+||+.||-.
T Consensus 2 ~vl~~pG~n~-------~~~~~~al~~aG~~v~~v~~~~~-----~~~~~~l~~~d~liipGG~~ 54 (238)
T cd01740 2 AVLRFPGSNC-------DRDMAYAFELAGFEAEDVWHNDL-----LAGRKDLDDYDGVVLPGGFS 54 (238)
T ss_pred EEEEcCCcCC-------HHHHHHHHHHcCCCEEEEeccCC-----ccccCCHhhCCEEEECCCCC
Confidence 4566664432 23567788889998876654321 11122346899999999943
No 362
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.21 E-value=4.1e+02 Score=26.98 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE---eCChhHHHHHHHH
Q 011290 90 DSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKV 161 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~-rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~---T~~~~ha~el~~~ 161 (489)
+.++...+.+++.+... + +|+=..|.+++ ..+...|.+.-....++.|++++.+. +..+.+..+.+++
T Consensus 10 ~iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~----d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~ 85 (297)
T PRK14168 10 EIREEILEEIRGEVAELKEKYGKVPGLVTILVGE----SPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDK 85 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCC----CHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45566666666665432 2 34334455544 44667888888999999999988764 3445555566666
Q ss_pred hhc-CCCceEEEEc---CCChHHHHHHHhhcCcC
Q 011290 162 LDL-SKYDGIVCVS---GDGILVEVVNGLLERED 191 (489)
Q Consensus 162 ~~~-~~~d~IV~vG---GDGtl~EVvnGL~~~~~ 191 (489)
+.. ...|+|++-= ..-.-.++++.+--..|
T Consensus 86 lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KD 119 (297)
T PRK14168 86 YNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKD 119 (297)
T ss_pred HhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccc
Confidence 643 3467777641 23334556655544444
No 363
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=27.18 E-value=86 Score=27.17 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=23.1
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhhc
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (489)
.++.|...+.++...|+++|+......
T Consensus 88 ~~~lfqA~~~ee~~~Wi~~I~~~~~~~ 114 (117)
T cd01230 88 REFLFQTSSLKELQSWIERINVVAAAF 114 (117)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 579999999999999999998876543
No 364
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.15 E-value=3e+02 Score=26.30 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=41.6
Q ss_pred HhHHHHHHhC-----CCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDA-----NIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a-----~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++...++. ++++.+..+.+ .....++.+.+...+.|+|++.+.|.. +.+.++.+.+. .+|+-.+
T Consensus 19 ~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~~i~~~~~~-------gIpvV~~ 91 (274)
T cd06311 19 WHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQPVAKAKKA-------GIFVVVV 91 (274)
T ss_pred HHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHC-------CCeEEEE
Confidence 3455666665 45555554432 222334555565568999999998865 45677666543 6887777
Q ss_pred cC
Q 011290 204 PA 205 (489)
Q Consensus 204 P~ 205 (489)
-.
T Consensus 92 d~ 93 (274)
T cd06311 92 DR 93 (274)
T ss_pred cC
Confidence 55
No 365
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=26.91 E-value=2.5e+02 Score=30.77 Aligned_cols=51 Identities=25% Similarity=0.343 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhhhc-CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE
Q 011290 91 SKRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~-~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~ 147 (489)
....|.+.|.+.++.. -+.+++-|++.|..|.+. ..+.++|+..|+++..+
T Consensus 189 ~~~~Y~~~l~~~v~~~~~~~~~lkVvvd~~~G~~~------~~~~~ll~~lG~~v~~l 240 (522)
T cd05801 189 FVTPYVADLGNVIDMDAIRKSGLRLGVDPLGGASV------PYWQPIAEKYGLNLTVV 240 (522)
T ss_pred cHHHHHHHHHHhhChhhhhcCCceEEEeCCCCccH------HHHHHHHHHcCCCEEEE
Confidence 3456777776666421 233578999999998763 35778899999977544
No 366
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=26.86 E-value=3.1e+02 Score=31.51 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=32.7
Q ss_pred hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
...+...|+..|+++.++..... .++ .+..++|+||+.||-|...+
T Consensus 529 ~~~l~~~L~~~G~~v~vv~~~~~---~~~---~~~~~~DgLILsgGPGsp~d 574 (717)
T TIGR01815 529 VHTLANYLRQTGASVTTLRHSHA---EAA---FDERRPDLVVLSPGPGRPAD 574 (717)
T ss_pred HHHHHHHHHHCCCeEEEEECCCC---hhh---hhhcCCCEEEEcCCCCCchh
Confidence 35688899999998877654332 122 22347999999999999865
No 367
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=26.59 E-value=2e+02 Score=27.50 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=28.8
Q ss_pred hHhHHHHHHhCCCc-EEEEEeCChhHH--HHHHHHhhcCCCceEEEEcCCC
Q 011290 130 LDDVKPLLEDANIQ-FTVQETTQQLHA--KEIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 130 ~~~v~p~l~~a~i~-~~v~~T~~~~ha--~el~~~~~~~~~d~IV~vGGDG 177 (489)
.++....|+..|+. +.+..+.....+ .++.+.+ .+.|+|++.|||=
T Consensus 46 ~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l--~~ad~I~~~GG~~ 94 (217)
T cd03145 46 GEEYRDVFERLGAREVEVLVIDSREAANDPEVVARL--RDADGIFFTGGDQ 94 (217)
T ss_pred HHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHH--HhCCEEEEeCCcH
Confidence 35788889998884 455444322211 2333443 4689999999985
No 368
>PTZ00150 phosphoglucomutase-2-like protein; Provisional
Probab=26.59 E-value=2.5e+02 Score=31.25 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhhc-CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCc
Q 011290 92 KRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQ 143 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~-~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~ 143 (489)
...|.+.|.+.+... -+.+++-|+++|..|.+. ..+.++|+..|++
T Consensus 208 ~~~Yi~~l~~~i~~~~i~~~~lkIv~d~~~G~g~------~~~~~iL~~lG~~ 254 (584)
T PTZ00150 208 SDAYFATLKSEYNPACCDRSKVKIVYTAMHGVGT------RFVQKALHTVGLP 254 (584)
T ss_pred HHHHHHHHHhhcChhhhccCCCeEEEeCCCCccH------HHHHHHHHhcCCC
Confidence 456777776654311 122568899999998763 3577889998986
No 369
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=26.53 E-value=1.4e+02 Score=25.49 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=19.5
Q ss_pred eeEEecCCCHHHHHHHHHHHHH
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRD 101 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~ 101 (489)
+++.|.+.+++.++.|.++++-
T Consensus 80 r~y~l~cdsEeqya~Wmaa~rl 101 (106)
T cd01237 80 NEVWLRCDNEKQYAKWMAACRL 101 (106)
T ss_pred eEEEEECCCHHHHHHHHHHHHH
Confidence 5899999999999999998654
No 370
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=26.37 E-value=2.5e+02 Score=26.46 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=40.5
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHHh-hcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVL-DLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~-~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++..+++.|+++.+..+.......+.+.++ ...+.|+||+.+.+... ..+..+... .+|+-.+
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~-~~~~~~~~~-------~ipvV~~ 88 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTRPDD-PRVALLLER-------GFPFVTH 88 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCCCCC-hHHHHHHhc-------CCCEEEE
Confidence 56778888899988887766543333444443 34579999998876432 334434332 5676665
No 371
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.16 E-value=5.4e+02 Score=25.37 Aligned_cols=77 Identities=10% Similarity=-0.029 Sum_probs=48.6
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE--EeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~--~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.+++.+|+.-.. -++ . ..+.++..+++.|+++.-. ......+...++.++...+.|.|++++.......+++.+
T Consensus 137 ~~~vail~~~~~-~g~--~-~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~ 212 (312)
T cd06346 137 YKSVATTYINND-YGV--G-LADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPETGSGILRSA 212 (312)
T ss_pred CCeEEEEEccCc-hhh--H-HHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccchHHHHHHHH
Confidence 578888774322 222 2 2357788899999875432 222334556677777667899998886655566667766
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
.+.
T Consensus 213 ~~~ 215 (312)
T cd06346 213 YEQ 215 (312)
T ss_pred HHc
Confidence 554
No 372
>PRK11175 universal stress protein UspE; Provisional
Probab=26.13 E-value=2.6e+02 Score=27.61 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc-CCChHHHHH-----HHhhcCcCccccCCCcEEEecC
Q 011290 135 PLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGILVEVV-----NGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 135 p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG-GDGtl~EVv-----nGL~~~~~~~~~~~~plgiIP~ 205 (489)
..+...+++++........-+..+.+.+...++|.||+-. |.+.+.+.+ ..|+.+ .++|+-++|.
T Consensus 76 ~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~------~~~pvlvv~~ 146 (305)
T PRK11175 76 KPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRK------CPCPVLMVKD 146 (305)
T ss_pred HHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhc------CCCCEEEecc
Confidence 3445567766654332212234566666666788666542 334455544 345544 3799999999
No 373
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=25.89 E-value=4e+02 Score=25.18 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=41.7
Q ss_pred HhHHHHHHhCCCcEEEEEeCChh-HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~-ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++..++..|.++.+..+.... ...++.+.+...+.|+|++++.+-.-. .+.-+... .+|+-.+
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~-~~~~~~~~-------~ipvV~~ 84 (264)
T cd06274 19 KRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSLPPDD-PYYLCQKA-------GLPVVAL 84 (264)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCchH-HHHHHHhc-------CCCEEEe
Confidence 46677788888888887665422 233566666667899999999864322 24444332 5676555
No 374
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=25.79 E-value=5.1e+02 Score=25.73 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=50.3
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~--~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.+++.+++..... ++ .. .+.++..+++.|+++.-..+- ...+...+++++...+.|.|++++.+.....++..+
T Consensus 141 ~~~v~~v~~~~~~-g~--~~-~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~~~~~~~~~~~~ 216 (345)
T cd06338 141 PKKVAILYADDPF-SQ--DV-AEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGHFPDAVLLVRQM 216 (345)
T ss_pred CceEEEEecCCcc-cH--HH-HHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCcchhHHHHHHHH
Confidence 5677777654332 22 22 356777888899876543322 224556677777767899999888888777788777
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
...
T Consensus 217 ~~~ 219 (345)
T cd06338 217 KEL 219 (345)
T ss_pred HHc
Confidence 654
No 375
>PRK09273 hypothetical protein; Provisional
Probab=25.74 E-value=1.5e+02 Score=28.55 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=32.4
Q ss_pred EEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--------eCChhHHHHHHHHhhcCCCce
Q 011290 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--------TTQQLHAKEIVKVLDLSKYDG 169 (489)
Q Consensus 114 viiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--------T~~~~ha~el~~~~~~~~~d~ 169 (489)
-++|-.|-..|-.-++ +.++..|+..|.++.=+- +.++.-+..++..+..+..|.
T Consensus 4 ali~e~sqa~kn~~i~-~~L~~~L~~~G~eV~D~G~~~~~~~s~dYpd~a~~vA~~V~~g~~d~ 66 (211)
T PRK09273 4 ALINENSQAAKNAIIY-EALKKVADPKGHEVFNYGMYDEEDHQLTYVQNGIMASILLNSKAVDF 66 (211)
T ss_pred EeecccchhhhhHHHH-HHHHHHHHHCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHcCCCCE
Confidence 3567777655544466 689999999988764332 244444555555544333443
No 376
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=25.71 E-value=3.9e+02 Score=27.74 Aligned_cols=101 Identities=12% Similarity=0.120 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhhhhc----CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHH
Q 011290 89 EDSKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKV 161 (489)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~----~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~ 161 (489)
...++.+.+.+++.+... ++..++.+|. .|...+...|.+.-....++.|++++.+.-. .+.+..+.+++
T Consensus 62 k~vA~~i~~~lk~~v~~l~~~~g~~P~LaiIl---vGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~ 138 (345)
T PLN02897 62 NVIAEEIRTKIASEVRKMKKAVGKVPGLAVVL---VGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRK 138 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeEEEEE---eCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345677777777766543 3333454333 2555677789888899999999998877532 34455566666
Q ss_pred hhc-CCCceEEEE---cCCChHHHHHHHhhcCcCc
Q 011290 162 LDL-SKYDGIVCV---SGDGILVEVVNGLLEREDW 192 (489)
Q Consensus 162 ~~~-~~~d~IV~v---GGDGtl~EVvnGL~~~~~~ 192 (489)
+.. ...|+|++- -..-.-.++++.+--.+|-
T Consensus 139 lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDV 173 (345)
T PLN02897 139 FNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDV 173 (345)
T ss_pred HhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCc
Confidence 643 356888764 3344455677766555543
No 377
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.64 E-value=4.1e+02 Score=26.86 Aligned_cols=97 Identities=9% Similarity=0.127 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhhhcCCCcEE-EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHhhc-C
Q 011290 91 SKRLWCEKLRDFIDSFGRPKRL-YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDL-S 165 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~~rpkr~-lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~~~-~ 165 (489)
.++.-.+.+++.+...++..++ .|.++ ...+...|.+.-....++.|+.++.+... .+.+..+.++++.. +
T Consensus 8 iA~~i~~~~k~~v~~l~~~P~LaiI~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~ 83 (287)
T PRK14181 8 AAEHILATIKENISASSTAPGLAVVLIG----NDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDP 83 (287)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEeC----CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4555556666666655444444 45554 44567789888899999999999877543 34455666667643 3
Q ss_pred CCceEEEE---cCCChHHHHHHHhhcCcC
Q 011290 166 KYDGIVCV---SGDGILVEVVNGLLERED 191 (489)
Q Consensus 166 ~~d~IV~v---GGDGtl~EVvnGL~~~~~ 191 (489)
..|+|++- -+.=.-.++++.+--..|
T Consensus 84 ~V~GIlvqlPlP~~i~~~~i~~~I~p~KD 112 (287)
T PRK14181 84 NIHGILVQLPLPKHLDAQAILQAISPDKD 112 (287)
T ss_pred CCCeEEEcCCCCCCcCHHHHHhccCcccC
Confidence 56777764 123333456665544444
No 378
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=25.43 E-value=3.9e+02 Score=25.51 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=41.9
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHH-HhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVK-VLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~-~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++..+++.|.++.+..+.......+..+ .+...+.|+|++.+.+=. .+.++-|... .+|+-++
T Consensus 19 ~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~-~~~~~~l~~~-------~iPvv~~ 84 (269)
T cd06297 19 EGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYDLT-ERLAERRLPT-------ERPVVLV 84 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCccC-hHHHHHHhhc-------CCCEEEE
Confidence 567788888898888877765443344444 355567999999987633 3444544332 5666555
No 379
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.27 E-value=3.9e+02 Score=26.84 Aligned_cols=98 Identities=15% Similarity=0.197 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhhhhc---C--CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHH
Q 011290 90 DSKRLWCEKLRDFIDSF---G--RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKV 161 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~---~--rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~ 161 (489)
+.++.+.+.|++.+... + +|+=..|+++. ..|...|.+.-....++.|++++.+.-. .+.+..+.+++
T Consensus 9 ~iA~~i~~~lk~~i~~l~~~g~~~P~Laii~vg~----d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~ 84 (278)
T PRK14172 9 EVALKIKEEIKNFVEERKENGLSIPKIASILVGN----DGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEE 84 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCC----CHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45666777777665533 2 34333455544 4466778888889999999999876532 34445556666
Q ss_pred hhc-CCCceEEEEc---CCChHHHHHHHhhcCcC
Q 011290 162 LDL-SKYDGIVCVS---GDGILVEVVNGLLERED 191 (489)
Q Consensus 162 ~~~-~~~d~IV~vG---GDGtl~EVvnGL~~~~~ 191 (489)
+.. ++.|+|++-= ..=.-.++++.+--..|
T Consensus 85 lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KD 118 (278)
T PRK14172 85 LNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKD 118 (278)
T ss_pred HhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccc
Confidence 643 3567877642 33344556665544444
No 380
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=25.22 E-value=1.5e+02 Score=25.77 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=45.2
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChh--H-HHHHH-HHhhcCCCceEEEEcCCChHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL--H-AKEIV-KVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~--h-a~el~-~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
.+++.+|. +..+.......+ +-.+..+...|+++......... . ..... ..++..++|+|+| +.|....-+++
T Consensus 9 ~r~i~~i~-~~~~~~~~~~r~-~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pdaii~-~~~~~a~~~~~ 85 (160)
T PF13377_consen 9 HRRIAFIG-GPPNSSVSRERL-EGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRLRPDAIIC-SNDRLALGVLR 85 (160)
T ss_dssp -SSEEEEE-SSTTSHHHHHHH-HHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTCSSSEEEE-SSHHHHHHHHH
T ss_pred CCeEEEEe-cCCCChhHHHHH-HHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcCCCcEEEE-cCHHHHHHHHH
Confidence 45666666 333333334333 45777889999987544332222 1 21111 1222225686666 88999999999
Q ss_pred HhhcCc
Q 011290 185 GLLERE 190 (489)
Q Consensus 185 GL~~~~ 190 (489)
.|.++.
T Consensus 86 ~l~~~g 91 (160)
T PF13377_consen 86 ALRELG 91 (160)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 998863
No 381
>PRK07053 glutamine amidotransferase; Provisional
Probab=25.17 E-value=97 Score=30.11 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=38.9
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl 179 (489)
++|++||-|-..-. ...+...|+..|+.++++..... +. ...+..+||+||+.||-...
T Consensus 2 m~~ilviqh~~~e~-------~g~i~~~L~~~g~~~~v~~~~~~-~~----~~~~~~~~d~lii~Ggp~~~ 60 (234)
T PRK07053 2 MKTAVAIRHVAFED-------LGSFEQVLGARGYRVRYVDVGVD-DL----ETLDALEPDLLVVLGGPIGV 60 (234)
T ss_pred CceEEEEECCCCCC-------ChHHHHHHHHCCCeEEEEecCCC-cc----CCCCccCCCEEEECCCCCCC
Confidence 67899998854422 13578889999998888765321 11 01234579999999986543
No 382
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=25.16 E-value=1.8e+02 Score=29.61 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=43.9
Q ss_pred EEEEEEcCCCCCccccc----cchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 111 RLYIFVNPFGGKKIASK----IFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~----~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+-+|++||.+.++.++. .| .++...|...+ +.|+.+..+ +-.+.++++.. .+...+.+-|-.+|-|++.-+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~-~~l~~~l~~~~--~~Vvl~g~~-~e~e~~~~i~~-~~~~~~~l~~k~sL~e~~~li 249 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHY-AELAELLIAKG--YQVVLFGGP-DEEERAEEIAK-GLPNAVILAGKTSLEELAALI 249 (334)
T ss_pred CCeEEEeccccccccCCCCHHHH-HHHHHHHHHCC--CEEEEecCh-HHHHHHHHHHH-hcCCccccCCCCCHHHHHHHH
Confidence 46899999944444432 36 35667777777 567776666 55555666542 333333367777888877755
No 383
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.15 E-value=4.8e+02 Score=26.28 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhhhhc---C-CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHh
Q 011290 90 DSKRLWCEKLRDFIDSF---G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVL 162 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~---~-rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~ 162 (489)
+.++.+.+.+++.+... + +|+=..|.+++. .+...|.+.-....++.|+.++.+.-. .+.+..+.++++
T Consensus 8 ~iA~~i~~~ik~~v~~l~~~g~~P~LaiI~vg~d----~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~l 83 (282)
T PRK14182 8 QIAAKVKGEVATEVRALAARGVQTGLTVVRVGDD----PASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARL 83 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45666677777765543 2 344344555544 466688888889999999999887632 344455566666
Q ss_pred hc-CCCceEEEEc---CCChHHHHHHHhhcCcCcc
Q 011290 163 DL-SKYDGIVCVS---GDGILVEVVNGLLEREDWN 193 (489)
Q Consensus 163 ~~-~~~d~IV~vG---GDGtl~EVvnGL~~~~~~~ 193 (489)
.. +..|+|++-= ..=.-.++++.+--..|-+
T Consensus 84 N~d~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVD 118 (282)
T PRK14182 84 NADPAVHGILVQLPLPKHVDERAVLDAISPAKDAD 118 (282)
T ss_pred hCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcC
Confidence 43 3567877641 2334456666665554433
No 384
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=25.08 E-value=1.7e+02 Score=28.04 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=32.9
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHH-hCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLE-DANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~-~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDG 177 (489)
|+.|+.+|-+- . +..+...|+ .+|+++..+..+. .+++.+|+||+.||-+
T Consensus 2 ~v~Vl~~~G~n---~----~~d~~~a~~~~~G~~~~~v~~~~----------~~l~~~D~lvipGG~~ 52 (219)
T PRK03619 2 KVAVIVFPGSN---C----DRDMARALRDLLGAEPEYVWHKE----------TDLDGVDAVVLPGGFS 52 (219)
T ss_pred EEEEEecCCcC---h----HHHHHHHHHhcCCCeEEEEecCc----------CCCCCCCEEEECCCCc
Confidence 68899999542 1 124566777 8898765553221 1346899999999853
No 385
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.93 E-value=3.9e+02 Score=26.91 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhhhc---CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHhh
Q 011290 90 DSKRLWCEKLRDFIDSF---GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLD 163 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~---~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~~ 163 (489)
+.++...+.+++.+... ++..++.+|. .|...+...|.+.-....++.|++++.+.-. .+.+..+.++++.
T Consensus 8 ~va~~i~~~l~~~v~~l~~~g~~P~Laii~---vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 84 (282)
T PRK14169 8 AVSKKILADLKQTVAKLAQQDVTPTLAVVL---VGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELN 84 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEE---eCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34555556666655433 3333454333 2445567789888899999999998876543 2344555556654
Q ss_pred c-CCCceEEEE---cCCChHHHHHHHhhcCcC
Q 011290 164 L-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (489)
Q Consensus 164 ~-~~~d~IV~v---GGDGtl~EVvnGL~~~~~ 191 (489)
. ...|+|++- -..=.-.++++.+--.+|
T Consensus 85 ~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KD 116 (282)
T PRK14169 85 HDPDVDAILVQLPLPAGLDEQAVIDAIDPDKD 116 (282)
T ss_pred CCCCCCEEEEeCCCCCCCCHHHHHhhcCcccC
Confidence 3 356777764 233344556665544444
No 386
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.93 E-value=4.6e+02 Score=24.68 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=37.8
Q ss_pred hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHH-hhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEe
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKV-LDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~-~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
.+.++..+++.|+++.+..+.....-.+.+.+ +...++|+||+++.+.. ...+..+... .+|+-.+
T Consensus 23 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~~-~~~~~~~~~~-------~ipvV~~ 89 (270)
T cd06294 23 LRGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYSRED-DPIIDYLKEE-------KFPFVVI 89 (270)
T ss_pred HHHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecCcCC-cHHHHHHHhc-------CCCEEEE
Confidence 35677888888988776554433222223333 33356999999876533 2344444332 5665555
No 387
>PRK12412 pyridoxal kinase; Reviewed
Probab=24.81 E-value=1.2e+02 Score=29.97 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=14.7
Q ss_pred CcccccceeccccccCCCCcHHHHH
Q 011290 210 AGTGNGMIKSLLDLVGEPCKASNAI 234 (489)
Q Consensus 210 ~GSgN~~a~sl~~~~g~~~~~~~A~ 234 (489)
.|+|+.|+-.+....-...++.+|+
T Consensus 209 ~GaGD~f~aa~aa~l~~g~~l~eA~ 233 (268)
T PRK12412 209 HGAGCTYSAAITAELAKGKPVKEAV 233 (268)
T ss_pred CchHHHHHHHHHHHHHCCCCHHHHH
Confidence 4999999877653322223555554
No 388
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=24.78 E-value=2.5e+02 Score=26.51 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=34.3
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChh-HHHHHHHHhhcCCCceEEEEcCCCh
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI 178 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~-ha~el~~~~~~~~~d~IV~vGGDGt 178 (489)
+...++..+++.|+++.+..+.+.. ...++++.+...+.|+|++.+++-.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 67 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLP 67 (267)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 3467888888999888776655322 2335556666678999999887644
No 389
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=24.75 E-value=5.1e+02 Score=25.63 Aligned_cols=86 Identities=6% Similarity=0.120 Sum_probs=48.5
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+.+.+.+++...+..-- ..+. +-++..+++.|+++.+..+.+ .....+..+.+...+.|+||+++-+.. .+.+.-|
T Consensus 62 ~~~~Igvi~~~~~~~~~-~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~~~~~-~~~~~~l 138 (331)
T PRK14987 62 TSRAIGVLLPSLTNQVF-AEVL-RGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERTHT-PRTLKMI 138 (331)
T ss_pred CCCEEEEEeCCCcchhH-HHHH-HHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC-HHHHHHH
Confidence 44566676643222111 1222 456777888888776665543 222334555565578999999875533 3555555
Q ss_pred hcCcCccccCCCcEEEe
Q 011290 187 LEREDWNDAIKVPLGVV 203 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiI 203 (489)
... ++|+-.+
T Consensus 139 ~~~-------~iPvV~~ 148 (331)
T PRK14987 139 EVA-------GIPVVEL 148 (331)
T ss_pred HhC-------CCCEEEE
Confidence 432 5776654
No 390
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=24.73 E-value=5.4e+02 Score=23.44 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=51.4
Q ss_pred ecCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh---hHHHHHHH
Q 011290 84 FEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ---LHAKEIVK 160 (489)
Q Consensus 84 ~~~~~~~~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~---~ha~el~~ 160 (489)
+.....+......+.+.+. . .+++.+|..+.. .... ...+.++..+++.++++........ .....+.+
T Consensus 104 ~~~~~~~~~~~~~~~l~~~----~-~~~i~~i~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (269)
T cd01391 104 VGPDNEQAGEAAAEYLAEK----G-WKRVALIYGDDG--AYGR-ERLEGFKAALKKAGIEVVAIEYGDLDTEKGFQALLQ 175 (269)
T ss_pred EcCCcHHHHHHHHHHHHHh----C-CceEEEEecCCc--chhh-HHHHHHHHHHHhcCcEEEeccccCCCccccHHHHHH
Confidence 3344444444444433333 2 578888877654 1112 2335677777877755432222111 12233444
Q ss_pred HhhcC-CCceEEEEcCCChHHHHHHHhhcC
Q 011290 161 VLDLS-KYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 161 ~~~~~-~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
.+... +.++|++++ |.....++..+.+.
T Consensus 176 ~l~~~~~~~~i~~~~-~~~a~~~~~~~~~~ 204 (269)
T cd01391 176 LLKAAPKPDAIFACN-DEMAAGALKAAREA 204 (269)
T ss_pred HHhcCCCCCEEEEcC-chHHHHHHHHHHHc
Confidence 44433 467666654 58888888888775
No 391
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=24.66 E-value=2.2e+02 Score=23.89 Aligned_cols=79 Identities=10% Similarity=0.220 Sum_probs=46.8
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCc
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~ 190 (489)
+++++. .+ |-...+..++++..+++.|+++++...... ++... .+++| +++.|-. +.--.+.+-+.-
T Consensus 2 ~Ill~C--~~--GaSSs~la~km~~~a~~~gi~~~i~a~~~~----e~~~~--~~~~D-vill~PQ--v~~~~~~i~~~~ 68 (99)
T cd05565 2 NVLVLC--AG--GGTSGLLANALNKGAKERGVPLEAAAGAYG----SHYDM--IPDYD-LVILAPQ--MASYYDELKKDT 68 (99)
T ss_pred EEEEEC--CC--CCCHHHHHHHHHHHHHHCCCcEEEEEeeHH----HHHHh--ccCCC-EEEEcCh--HHHHHHHHHHHh
Confidence 466666 23 355667788999999999999887754432 23233 34788 4444443 222233332211
Q ss_pred CccccCCCcEEEecC
Q 011290 191 DWNDAIKVPLGVVPA 205 (489)
Q Consensus 191 ~~~~~~~~plgiIP~ 205 (489)
....+|+.+||.
T Consensus 69 ---~~~~ipv~~I~~ 80 (99)
T cd05565 69 ---DRLGIKLVTTTG 80 (99)
T ss_pred ---hhcCCCEEEeCH
Confidence 113689999997
No 392
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=24.63 E-value=2.4e+02 Score=26.13 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=35.2
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EV 182 (489)
|-..+...|.+.|.++.++..+.. .+. ++...++|+||+-||=|...+.
T Consensus 11 ft~nl~~~l~~~g~~v~v~~~~~~-~~~----~~~~~~~d~iils~GPg~p~~~ 59 (187)
T PRK08007 11 FTWNLYQYFCELGADVLVKRNDAL-TLA----DIDALKPQKIVISPGPCTPDEA 59 (187)
T ss_pred cHHHHHHHHHHCCCcEEEEeCCCC-CHH----HHHhcCCCEEEEcCCCCChHHC
Confidence 445688889999999888765431 222 2333479999999999988764
No 393
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=24.43 E-value=3.6e+02 Score=27.55 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=40.9
Q ss_pred CCcEEEEEE--c-CCCCCccccccchHhHHHHHHhCCCcEEEEE--eCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011290 108 RPKRLYIFV--N-PFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 108 rpkr~lvii--N-P~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~~~ha~el~~~~~~~~~d~IV~vGGDG 177 (489)
++.|+.||. | +..|+ -...+...++..|+..|+++..+. ........+.++++...++|.||+-||=|
T Consensus 158 r~~rv~II~TG~Ev~~G~--i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 158 RPLRVGLIVTGSEVYGGR--IEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred CCCEEEEEEcCCcCCCCc--EEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 456777776 3 33333 233344578888999998765433 34444444444444333589999999865
No 394
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=24.42 E-value=1.3e+02 Score=24.80 Aligned_cols=78 Identities=23% Similarity=0.243 Sum_probs=44.5
Q ss_pred HHHHHHHHhhh-h-cCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-----------h--hHHHHH
Q 011290 94 LWCEKLRDFID-S-FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-----------Q--LHAKEI 158 (489)
Q Consensus 94 ~w~~~l~~~~~-~-~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-----------~--~ha~el 158 (489)
.|.+.|.+.+. . .-+.+++.|+|++..|.+. ..+..+|+..|+++....... + .....+
T Consensus 2 ~Y~~~l~~~~~~~~~~~~~~~kivvD~~~G~~~------~~~~~ll~~lg~~~~~~n~~~d~~f~~~~~p~p~~~~l~~~ 75 (104)
T PF02879_consen 2 AYIESLLSFIDILEAIKKSGLKIVVDCMNGAGS------DILPRLLERLGCDVIELNCDPDPDFPNQHAPNPEEESLQRL 75 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHTTCEEEEE-TTSTTH------HHHHHHHHHTTCEEEEESSS-STTGTTTSTSSTSTTTTHHH
T ss_pred hHHHHHhhhccchhhcccCCCEEEEECCCCHHH------HHHHHHHHHcCCcEEEEecccccccccccccccccchhHHH
Confidence 35566656554 1 1123457899999998763 357778888888655432211 1 112334
Q ss_pred HHHhhcCCCceEEEEcCCC
Q 011290 159 VKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 159 ~~~~~~~~~d~IV~vGGDG 177 (489)
.+.+...+.|..++.=|||
T Consensus 76 ~~~v~~~~ad~g~~~DgDa 94 (104)
T PF02879_consen 76 IKIVRESGADLGIAFDGDA 94 (104)
T ss_dssp HHHHHHSTTSEEEEE-TTS
T ss_pred HHHhhccCceEEEEECCcC
Confidence 3444445678888888887
No 395
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.41 E-value=4.5e+02 Score=26.48 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhhhc---CCCcEEE-EEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHh
Q 011290 90 DSKRLWCEKLRDFIDSF---GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVL 162 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~---~rpkr~l-viiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~ 162 (489)
+.++...+.+++.+... ++..++. |.++ ...+...|.+.-....++.|++++.+.-. .+.+..+.++++
T Consensus 10 ~va~~i~~~l~~~v~~l~~~g~~P~LaiI~vg----~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~l 85 (284)
T PRK14193 10 ATADEIKADLAERVAALKEKGITPGLGTVLVG----DDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDEL 85 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCceEEEEEeC----CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45666666676665432 3333454 4444 44567789888899999999998887633 244455556666
Q ss_pred hc-CCCceEEEEc---CCChHHHHHHHhhcCcC
Q 011290 163 DL-SKYDGIVCVS---GDGILVEVVNGLLERED 191 (489)
Q Consensus 163 ~~-~~~d~IV~vG---GDGtl~EVvnGL~~~~~ 191 (489)
.. ...|+|++-= ..=.-.++++.+--..|
T Consensus 86 N~D~~V~GIlvqlPlP~~id~~~i~~~I~p~KD 118 (284)
T PRK14193 86 NADPACTGYIVQLPLPKHLDENAVLERIDPAKD 118 (284)
T ss_pred hCCCCCCEEEEeCCCCCCCCHHHHHhcCCcccC
Confidence 43 3467777641 22334556665544444
No 396
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.38 E-value=4.3e+02 Score=25.01 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=40.4
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhH-HHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~h-a~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.++..++..|+++.+..++.... -.++.+.+...++|+|++.+.+.. ++++.+..+ ++|+-.+
T Consensus 22 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--~~~~~l~~~-------~ipvV~~ 86 (268)
T cd06277 22 RAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGIST--EYIKEIKEL-------GIPFVLV 86 (268)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCCCh--HHHHHHhhc-------CCCEEEE
Confidence 467778888898887766654332 223445555568999999987653 446655443 4665444
No 397
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=24.37 E-value=4.7e+02 Score=24.66 Aligned_cols=44 Identities=11% Similarity=0.298 Sum_probs=29.9
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDG 177 (489)
+-++..+++.|..+.+..+.. ..+..+.+...++|+|++.+.+-
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~---~~~~~~~l~~~~vdgii~~~~~~ 62 (261)
T cd06272 19 TGINQAISKNGYNMNVSITPS---LAEAEDLFKENRFDGVIIFGESA 62 (261)
T ss_pred HHHHHHHHHcCCEEEEEeccc---HHHHHHHHHHcCcCEEEEeCCCC
Confidence 567777888888877766552 23344555556899999987653
No 398
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=24.35 E-value=4.9e+02 Score=25.75 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=44.3
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCC---cEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI---QFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i---~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
..+++.+++.-.. +...++..+++.+. .+.+.......+...++.++...+.|.||+.+-......++.
T Consensus 128 ~w~~vavl~~~~~--------~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~~~~d~vv~~~~~~~~~~~~~ 199 (327)
T cd06382 128 NWKSFTIIYESAE--------GLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEIKNSGDNRIIIDCSADILIELLK 199 (327)
T ss_pred CCcEEEEEecChH--------HHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHHHhcCceEEEEECCHHHHHHHHH
Confidence 4578888877543 22456667776664 333332222225667778887778898888776555666665
Q ss_pred Hhhc
Q 011290 185 GLLE 188 (489)
Q Consensus 185 GL~~ 188 (489)
.+.+
T Consensus 200 qa~~ 203 (327)
T cd06382 200 QAQQ 203 (327)
T ss_pred HHHH
Confidence 5544
No 399
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.21 E-value=4.4e+02 Score=26.55 Aligned_cols=112 Identities=14% Similarity=0.201 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhhhhc---CCCcEEE-EEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC---hhHHHHHHHHh
Q 011290 90 DSKRLWCEKLRDFIDSF---GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVL 162 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~---~rpkr~l-viiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~---~~ha~el~~~~ 162 (489)
+.++...+.+++.+... +...++. |.+ |...+...|.+.-....++.|++++.+.-.. +.+..+.++++
T Consensus 10 ~ia~~i~~~~~~~v~~l~~~g~~p~Laii~v----g~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~l 85 (286)
T PRK14175 10 QIAKDYRQGLQDQVEALKEKGFTPKLSVILV----GNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRL 85 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCeEEEEEe----CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45666666676665433 3333444 444 4445677898888999999999998875432 34455555666
Q ss_pred hc-CCCceEEEE---cCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 163 DL-SKYDGIVCV---SGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 163 ~~-~~~d~IV~v---GGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
.. ...|+|++- -..=.-.++++.+--.+|-+......+|-+-.
T Consensus 86 N~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~ 132 (286)
T PRK14175 86 NNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYI 132 (286)
T ss_pred hCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhc
Confidence 43 356777764 23344455666665554433333333444433
No 400
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.14 E-value=4.5e+02 Score=26.20 Aligned_cols=103 Identities=11% Similarity=0.105 Sum_probs=51.6
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHh-CCCcEEEEEeCC--hhHHH
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLED-ANIQFTVQETTQ--QLHAK 156 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~-a~i~~~v~~T~~--~~ha~ 156 (489)
..+.|+..... ..+...+-+++....+.+++.+|++....-++. +.+.+++.+++ .|.++.....-. .....
T Consensus 107 ~~~~fr~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~g~~---~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 181 (332)
T cd06344 107 GPYFFRTVPSN--AVAARALAKYLKKKNKIKKVAIFYNSTSPYSQS---LKQEFTSALLERGGGIVVTPCDLSSPDFNAN 181 (332)
T ss_pred CCcEEEeCCCc--HHHHHHHHHHHHhhcCCCeEEEEeCCCchHhHH---HHHHHHHHHHHhcCCeeeeeccCCCCCCCHH
Confidence 34666554321 224444545554444468898888764411221 23467777887 466543221111 11244
Q ss_pred HHHHHhhcCCCceEEEEcCCChHHHHHHHhh
Q 011290 157 EIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 157 el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~ 187 (489)
..+.++...+.|.|++.+.-+.+..++..+-
T Consensus 182 ~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~~ 212 (332)
T cd06344 182 TAVSQAINNGATVLVLFPDTDTLDKALEVAK 212 (332)
T ss_pred HHHHHHHhcCCCEEEEeCChhHHHHHHHHHH
Confidence 4566665567887765543334444444433
No 401
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=24.12 E-value=2.5e+02 Score=27.47 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=36.2
Q ss_pred hHHHHHHhCCCcEEEEEeC-ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 132 DVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 132 ~v~p~l~~a~i~~~v~~T~-~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
-++..-++.++++++++.. ......+.++++..++||.||+.|. .+.+.+.....
T Consensus 22 G~~~~~~~~gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g~--~~~~~~~~vA~ 77 (258)
T cd06353 22 GRKAAEKALGVEVTYVENVPEGADAERVLRELAAQGYDLIFGTSF--GFMDAALKVAK 77 (258)
T ss_pred HHHHHHHhcCCeEEEEecCCchHhHHHHHHHHHHcCCCEEEECch--hhhHHHHHHHH
Confidence 3444445567888888777 5666777788877778999988432 34455444443
No 402
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=24.12 E-value=2.5e+02 Score=24.84 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=36.1
Q ss_pred HhHHHHHHhCCCcEEEEE--eCChhHHHHHHHHhhcCCCceEEEEcCCCh-----HHHHHHHhh
Q 011290 131 DDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGLL 187 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~--T~~~~ha~el~~~~~~~~~d~IV~vGGDGt-----l~EVvnGL~ 187 (489)
..++..|++.|+++..+. .+..+...+.++++. .++|.||+.||=|. ..+++..+.
T Consensus 30 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~-~~~DliIttGG~g~g~~D~t~~ai~~~g 92 (144)
T TIGR00177 30 PLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAV-DEADVVLTTGGTGVGPRDVTPEALEELG 92 (144)
T ss_pred HHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHH-hCCCEEEECCCCCCCCCccHHHHHHHhC
Confidence 468889999998765443 334443344444442 47999999998765 356666544
No 403
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=24.03 E-value=6.3e+02 Score=25.09 Aligned_cols=78 Identities=10% Similarity=0.058 Sum_probs=48.0
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE--EeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~--~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
..+++.++.+..+- ++. ..+.++..|+..|+++... ......+...++.++...++|.|++.+-..-...++..
T Consensus 131 g~~~v~i~~~~~~~-g~~---~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~ 206 (333)
T cd06358 131 GARRWYLIGNDYVW-PRG---SLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASGADAVLSTLVGQDAVAFNRQ 206 (333)
T ss_pred CCCeEEEEeccchh-hHH---HHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHcCCCEEEEeCCCCchHHHHHH
Confidence 35788887766542 221 2356777888999876432 22234455566677766789988876655444466666
Q ss_pred hhcC
Q 011290 186 LLER 189 (489)
Q Consensus 186 L~~~ 189 (489)
+.+.
T Consensus 207 ~~~~ 210 (333)
T cd06358 207 FAAA 210 (333)
T ss_pred HHHc
Confidence 6543
No 404
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=23.99 E-value=1.1e+02 Score=29.79 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=13.7
Q ss_pred CCCceEEEEcCCChHH
Q 011290 165 SKYDGIVCVSGDGILV 180 (489)
Q Consensus 165 ~~~d~IV~vGGDGtl~ 180 (489)
++||+|++.||=|...
T Consensus 95 ~dYDav~iPGG~g~~~ 110 (232)
T cd03148 95 SEYAAVFIPGGHGALI 110 (232)
T ss_pred hhceEEEECCCCCChh
Confidence 5899999999988754
No 405
>PRK09982 universal stress protein UspD; Provisional
Probab=23.94 E-value=3.4e+02 Score=23.52 Aligned_cols=46 Identities=15% Similarity=0.440 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCceEEEEcCCChHHHHH---HHhhcCcCccccCCCcEEEecC
Q 011290 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVV---NGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 154 ha~el~~~~~~~~~d~IV~vGGDGtl~EVv---nGL~~~~~~~~~~~~plgiIP~ 205 (489)
-+.+|++.++..+.|.||+-.+-+.+.+++ ++++.+ .++|+-++|.
T Consensus 91 p~~~I~~~A~~~~aDLIVmG~~~~~~~~~~~va~~V~~~------s~~pVLvv~~ 139 (142)
T PRK09982 91 MPETLLEIMQKEQCDLLVCGHHHSFINRLMPAYRGMINK------MSADLLIVPF 139 (142)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChhHHHHHHHHHHHHHhc------CCCCEEEecC
Confidence 355677777777899999887766666555 333433 3789999886
No 406
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=23.94 E-value=2.5e+02 Score=26.06 Aligned_cols=49 Identities=16% Similarity=0.090 Sum_probs=33.9
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EV 182 (489)
|-..+...|...|.++.+...... .+.++ ....+|+||+-||-|..++.
T Consensus 11 ft~~~~~~l~~~g~~v~v~~~~~~-~~~~~----~~~~~d~iilsgGpg~p~~~ 59 (188)
T TIGR00566 11 FTYNLVQYFCELGAEVVVKRNDSL-TLQEI----EALLPLLIVISPGPCTPNEA 59 (188)
T ss_pred HHHHHHHHHHHcCCceEEEECCCC-CHHHH----HhcCCCEEEEcCCCCChhhc
Confidence 555688888888988877664321 12222 22368999999999998763
No 407
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=23.92 E-value=3e+02 Score=30.29 Aligned_cols=50 Identities=28% Similarity=0.400 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhhhc-CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE
Q 011290 92 KRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~-~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~ 147 (489)
...|.+.|.+.+.-. -+.+++-|+++|..|.+. ..+.++|+..|+++..+
T Consensus 207 ~~~Y~~~l~~~i~~~~i~~~~lkVvvD~~~Ga~~------~~~~~il~~lG~~v~~l 257 (543)
T TIGR01132 207 VQPYVDGLADIVDMAAIQKAGLRLGVDPLGGSGI------DYWKRIAEKYNLNLTLV 257 (543)
T ss_pred HHHHHHHHHHhhhhhhhhcCCceEEEeCCCCCcH------HHHHHHHHHcCCCEEEE
Confidence 456777777765421 223478999999888763 35778999999877544
No 408
>PRK09492 treR trehalose repressor; Provisional
Probab=23.86 E-value=2.4e+02 Score=27.78 Aligned_cols=79 Identities=9% Similarity=0.089 Sum_probs=45.3
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC-ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~-~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~ 187 (489)
-+++.+|-.+.+....+.... +-.+..++++|+++.....+ ....+.+.++++-..++|+|+|.+ |-+-..+++.|.
T Consensus 175 ~~~I~~i~~~~~~~~~~~~R~-~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~~-D~~A~g~~~al~ 252 (315)
T PRK09492 175 HRHISYLGVDHSDVTTGKRRH-QAYLAFCKQHKLTPVAALGGLSMQSGYELVAKVLTPETTALVCAT-DTLALGASKYLQ 252 (315)
T ss_pred CCeEEEEcCCcccchhHHHHH-HHHHHHHHHcCCCceeecCCCCchHHHHHHHHHhhcCCCEEEEcC-cHHHHHHHHHHH
Confidence 356776642322211122222 34667788888875543322 223455566665335678777555 888888888887
Q ss_pred cC
Q 011290 188 ER 189 (489)
Q Consensus 188 ~~ 189 (489)
++
T Consensus 253 ~~ 254 (315)
T PRK09492 253 EQ 254 (315)
T ss_pred Hc
Confidence 75
No 409
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=23.70 E-value=2.8e+02 Score=28.37 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=45.3
Q ss_pred EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCChhHHHHHHHHhhcCCCceEEEEcCCCh-----HHHHHHH
Q 011290 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNG 185 (489)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~~~ha~el~~~~~~~~~d~IV~vGGDGt-----l~EVvnG 185 (489)
.+++.-....++....-...++.+|+..|+++..+. -+......+.++++...++|.|++.||=|. ..|++..
T Consensus 160 Iltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~~D~tpeAl~~ 239 (312)
T PRK03604 160 VLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGPRDVTPEALAP 239 (312)
T ss_pred EEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCCCccHHHHHHH
Confidence 344555444444333333578999999998765433 334333445445543357999999999663 4566666
Q ss_pred hhc
Q 011290 186 LLE 188 (489)
Q Consensus 186 L~~ 188 (489)
+.+
T Consensus 240 lg~ 242 (312)
T PRK03604 240 LLE 242 (312)
T ss_pred hcC
Confidence 554
No 410
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.68 E-value=5.2e+02 Score=24.50 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=43.6
Q ss_pred chHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCC---Ch-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGD---GI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGD---Gt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+.+.++..+++.|..+.+..+.. .....++++.+...+.|+|++.+.. -. ..+.++.+..+ ++|+-.+
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~-------~ipvV~i 89 (273)
T cd06292 17 FAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAER-------GLPVVLV 89 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhC-------CCCEEEE
Confidence 33578888888998887766654 2334456677777789999998743 21 23335555443 5776665
No 411
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.63 E-value=4.7e+02 Score=26.53 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHH
Q 011290 90 DSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKV 161 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~-rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~ 161 (489)
+.++.+.+.+++.+... + +|+=..|.++. ..+...|.+.-....++.|++++.+.-. .+.+..+.+++
T Consensus 8 ~iA~~i~~~i~~~v~~l~~~~g~~P~Laii~vg~----d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 83 (295)
T PRK14174 8 KVSLDLKNELKTRVEAYRAKTGKVPGLTVIIVGE----DPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIED 83 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCC----ChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45666667676665533 2 34333455554 4466789888899999999999877543 23445555666
Q ss_pred hhc-CCCceEEEE
Q 011290 162 LDL-SKYDGIVCV 173 (489)
Q Consensus 162 ~~~-~~~d~IV~v 173 (489)
+.. ...|+|++-
T Consensus 84 lN~D~~V~GIlvq 96 (295)
T PRK14174 84 LNNDPDVHGILVQ 96 (295)
T ss_pred HhCCCCCCEEEEe
Confidence 643 346777654
No 412
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=23.61 E-value=2.2e+02 Score=26.60 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=31.5
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~ 180 (489)
+...++..|+.+|.+++++..... . ++.+||+||+-||-++..
T Consensus 15 ~~~~~~~~l~~~g~~~~~~~~~~~-------~--~l~~~d~iii~GG~~~~~ 57 (200)
T PRK13527 15 HIDALKRALDELGIDGEVVEVRRP-------G--DLPDCDALIIPGGESTTI 57 (200)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCh-------H--HhccCCEEEECCCcHHHH
Confidence 445677889999998888776542 1 235799999999977653
No 413
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=23.55 E-value=89 Score=24.61 Aligned_cols=24 Identities=25% Similarity=0.668 Sum_probs=21.6
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~ 103 (489)
..+.|.+++.++...|.++|+..+
T Consensus 80 ~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 80 KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 688999999999999999998765
No 414
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.54 E-value=6.8e+02 Score=25.30 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=55.0
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHhhc-CCCceEEEEc---CCChHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDL-SKYDGIVCVS---GDGILV 180 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~~~-~~~d~IV~vG---GDGtl~ 180 (489)
+|+=..|.+++ ..+...|.+.-.+..++.|+.++.+.-. .+.+..+.++++.. +..|+|++-= ..=.-.
T Consensus 32 ~P~LaiI~vg~----d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~ 107 (288)
T PRK14171 32 SPKLAIVLVGD----NPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKN 107 (288)
T ss_pred CCeEEEEEeCC----CccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHH
Confidence 35433455554 4466788888889999999999877632 34445555666643 3567877642 333455
Q ss_pred HHHHHhhcCcCccccCCCcEEEecC
Q 011290 181 EVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 181 EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
++++.+--.+|-+......+|-+-.
T Consensus 108 ~i~~~I~p~KDVDGl~~~N~g~l~~ 132 (288)
T PRK14171 108 KILSAVSPSKDIDGFHPLNVGYLHS 132 (288)
T ss_pred HHHhccCcccccccCCccchhhhhc
Confidence 6676665555443333344444433
No 415
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.29 E-value=5.7e+02 Score=25.68 Aligned_cols=78 Identities=15% Similarity=-0.053 Sum_probs=50.8
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE--EeCChhHHHHHHHHhhcCCCceEEEEcCCC-hHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVN 184 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~--~T~~~~ha~el~~~~~~~~~d~IV~vGGDG-tl~EVvn 184 (489)
..+++.+|+....- ++ ... +.++..+++.|.++... ......+....+.++...+.|.|++++-.. ....+++
T Consensus 137 ~~~~v~il~~d~~~-g~--~~~-~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~ 212 (347)
T cd06336 137 GGKKVALLGPNDAY-GQ--PWV-AAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEKPDVIFLGGPSPAPAALVIK 212 (347)
T ss_pred CCceEEEEccCCch-hH--HHH-HHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHhcCCCEEEEcCCCchHHHHHHH
Confidence 46788888765553 22 223 56788888888765322 122234556667777667899988776655 7788888
Q ss_pred HhhcC
Q 011290 185 GLLER 189 (489)
Q Consensus 185 GL~~~ 189 (489)
.+-..
T Consensus 213 ~~~~~ 217 (347)
T cd06336 213 QAREL 217 (347)
T ss_pred HHHHc
Confidence 77654
No 416
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=23.15 E-value=5.7e+02 Score=25.97 Aligned_cols=101 Identities=11% Similarity=0.138 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHH
Q 011290 89 EDSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVK 160 (489)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~----~-rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~ 160 (489)
.+.++...+.+++.+..+ + +|+=..|.++. ..+...|.+.-....++.|++++.+.-. .+.+..+.++
T Consensus 15 k~vA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~----d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~ 90 (299)
T PLN02516 15 KAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGS----RKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVH 90 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEECC----ChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 345666667776665432 2 34333455554 4466688888889999999998777542 3455556666
Q ss_pred Hhhc-CCCceEEEE---cCCChHHHHHHHhhcCcCcc
Q 011290 161 VLDL-SKYDGIVCV---SGDGILVEVVNGLLEREDWN 193 (489)
Q Consensus 161 ~~~~-~~~d~IV~v---GGDGtl~EVvnGL~~~~~~~ 193 (489)
++.. ...|+|++- -..-.-.++++.+--..|-+
T Consensus 91 ~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVD 127 (299)
T PLN02516 91 ELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVD 127 (299)
T ss_pred HHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccC
Confidence 6643 346777764 23444556777665555433
No 417
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=23.07 E-value=2.6e+02 Score=26.28 Aligned_cols=40 Identities=20% Similarity=0.136 Sum_probs=31.0
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ 151 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~ 151 (489)
|-+.|..-|++ .|...+.. +.+...++++|.+++++....
T Consensus 2 ki~~I~gs~r~-~G~t~~l~-~~~~~g~~~~G~E~~~i~v~~ 41 (207)
T COG0655 2 KILGINGSPRS-NGNTAKLA-EAVLEGAEEAGAEVEIIRLPE 41 (207)
T ss_pred eeeEEEecCCC-CCcHHHHH-HHHHHHHHHcCCEEEEEEecC
Confidence 45678888998 66666554 688999999999998887654
No 418
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=23.01 E-value=3.4e+02 Score=25.70 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=34.2
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EV 182 (489)
+++.||-+..+. . ..+...|+..|.++++..+..+.+ ++++|+||+-|+ |...+.
T Consensus 2 ~~~~iid~g~gn-------~-~s~~~al~~~g~~~~v~~~~~~~~---------l~~~d~lIlpG~-~~~~~~ 56 (209)
T PRK13146 2 MTVAIIDYGSGN-------L-RSAAKALERAGAGADVVVTADPDA---------VAAADRVVLPGV-GAFADC 56 (209)
T ss_pred CeEEEEECCCCh-------H-HHHHHHHHHcCCCccEEEECCHHH---------hcCCCEEEECCC-CcHHHH
Confidence 466766664332 1 356678888888666666665432 258999999775 544433
No 419
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=22.94 E-value=3.5e+02 Score=25.73 Aligned_cols=67 Identities=9% Similarity=0.196 Sum_probs=41.3
Q ss_pred HhHHHHHHhC-CCcEEEEEeC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEec
Q 011290 131 DDVKPLLEDA-NIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 131 ~~v~p~l~~a-~i~~~v~~T~-~~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiIP 204 (489)
+.++..+... |+.+.+..+. ....-.+.++++...+.|+|++.+.+-. ..+.+..+... ++|+-++=
T Consensus 19 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~-------~ipvV~~~ 88 (270)
T cd06308 19 DEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYRA-------GIPVILLD 88 (270)
T ss_pred HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHHHC-------CCCEEEeC
Confidence 4566777775 7777665543 2222334556655568999999987743 34556655442 67776663
No 420
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=22.86 E-value=5.9e+02 Score=26.27 Aligned_cols=58 Identities=9% Similarity=0.071 Sum_probs=35.9
Q ss_pred HhHHHHHHhCCCcEEEEEeC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcC
Q 011290 131 DDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~--~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
+.+...++..|+++...+.. ...+...+++++.... +.||+++.......++..+.+.
T Consensus 166 ~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~-~iii~~~~~~~~~~i~~~a~~~ 225 (405)
T cd06385 166 EGLYMELKKNNITVVDLVFEEDDLINYTTLLQDIKQKG-RVIYVCCSPDIFRRLMLQFWRE 225 (405)
T ss_pred HHHHHHHHhCCeEEEEeeccCCchhhHHHHHHHHhhcc-eEEEEeCCHHHHHHHHHHHHHc
Confidence 46777788888876544322 2334556777775444 7777777766666666555443
No 421
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=22.82 E-value=3.1e+02 Score=25.94 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=40.2
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHH------------hhcCCCceEEEEcCCC
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKV------------LDLSKYDGIVCVSGDG 177 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~------------~~~~~~d~IV~vGGDG 177 (489)
++++|| |.|+.- ..+++.++ .+|..++|+-.+-.....+++++ -++.+++.||++-||-
T Consensus 10 k~vlVv-----GgG~va---~rk~~~Ll-~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 10 RAVLVV-----GGGDVA---LRKARLLL-KAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDE 80 (205)
T ss_pred CeEEEE-----CcCHHH---HHHHHHHH-HCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCH
Confidence 466666 545432 13455444 46667777654433334444332 1245788899999998
Q ss_pred hHHHHHHHhhc
Q 011290 178 ILVEVVNGLLE 188 (489)
Q Consensus 178 tl~EVvnGL~~ 188 (489)
-+|+-+-....
T Consensus 81 ~ln~~i~~~a~ 91 (205)
T TIGR01470 81 ELNRRVAHAAR 91 (205)
T ss_pred HHHHHHHHHHH
Confidence 77776555443
No 422
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=22.78 E-value=1.9e+02 Score=26.21 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=43.7
Q ss_pred EEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHhhc
Q 011290 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGLLE 188 (489)
Q Consensus 112 ~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG---GDGtl~EVvnGL~~ 188 (489)
++||+ .|..|..+++- +.+...|.. ..++++....... .++.+||.|+++. |+|.+.+.+..++.
T Consensus 2 i~IiY--~S~tGnTe~vA-~~Ia~~l~~--~~~~i~~~~~~~~-------~~l~~~d~ii~gspty~~g~~p~~~~~fl~ 69 (167)
T TIGR01752 2 IGIFY--GTDTGNTEGIA-EKIQKELGE--DDVDVFNIAKASK-------EDLNAYDKLILGTPTWGVGELQEDWEDFLP 69 (167)
T ss_pred EEEEE--ECCCChHHHHH-HHHHHHhCC--CceEEEEcccCCH-------hHHhhCCEEEEEecCCCCCcCcHHHHHHHH
Confidence 45666 45666666543 566666654 3345544333211 1345799988888 88977755444433
Q ss_pred CcCccccCCCcEEEecC
Q 011290 189 REDWNDAIKVPLGVVPA 205 (489)
Q Consensus 189 ~~~~~~~~~~plgiIP~ 205 (489)
.-........+++++=.
T Consensus 70 ~l~~~~l~gk~v~~fg~ 86 (167)
T TIGR01752 70 TLEELDFTGKTVALFGL 86 (167)
T ss_pred HhhcCCCCCCEEEEEec
Confidence 21101112456665533
No 423
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=22.73 E-value=2.3e+02 Score=27.00 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=39.5
Q ss_pred cEEEEEEcCCCCCcc---ccccchHhHHHHHHhCCCcEEEEEeCChhH-HHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKI---ASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~---a~~~~~~~v~p~l~~a~i~~~v~~T~~~~h-a~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++-+|++||.++... ..+.| .++...|...+ +.++.+-.+.+ ..++++++...-.+.++..-|.-+|.|++--
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~-~~l~~~l~~~~--~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKW-AELIERLKERG--YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHH-HHHHHHHCCCT---EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHH-HHHHHHHHhhC--ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHH
Confidence 446788999887621 11224 25556666666 56666666666 5666666642211225666677889997765
Q ss_pred hhc
Q 011290 186 LLE 188 (489)
Q Consensus 186 L~~ 188 (489)
+-.
T Consensus 181 i~~ 183 (247)
T PF01075_consen 181 ISR 183 (247)
T ss_dssp HHT
T ss_pred Hhc
Confidence 443
No 424
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=22.69 E-value=3.3e+02 Score=27.22 Aligned_cols=78 Identities=18% Similarity=0.066 Sum_probs=45.5
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC----ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~----~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVv 183 (489)
..+++.+++.. ..-+.. .. +.++..+++.|..++++... ...+...++.++...+.|.|++++..+-.-.++
T Consensus 137 ~~~~v~~l~~~-~~~g~~--~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~~i~~~~~d~ii~~~~~~~~~~~~ 212 (346)
T cd06330 137 KAKTWATINPD-YAYGQD--AW-ADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSLWGGDLVTFV 212 (346)
T ss_pred CccEEEEECCc-hHHHHH--HH-HHHHHHHHHhCCCCeecccccCCCCCcccHHHHHHHHhcCCCEEEEecccccHHHHH
Confidence 35677766533 222222 22 56788888886544443221 234555666777667899988876544555667
Q ss_pred HHhhcC
Q 011290 184 NGLLER 189 (489)
Q Consensus 184 nGL~~~ 189 (489)
..+.+.
T Consensus 213 ~~~~~~ 218 (346)
T cd06330 213 RQANAR 218 (346)
T ss_pred HHHHhc
Confidence 666554
No 425
>PRK07564 phosphoglucomutase; Validated
Probab=22.69 E-value=3e+02 Score=30.34 Aligned_cols=50 Identities=26% Similarity=0.263 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhhhc-CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE
Q 011290 92 KRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~-~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~ 147 (489)
...|.+.|.+.++.. -+.+++-|++.|..|.+. ..+.++|+..|+++..+
T Consensus 206 ~~~Y~~~l~~~i~~~~i~~~~lkIvvD~~~G~~~------~~~~~ll~~lG~~v~~l 256 (543)
T PRK07564 206 VADYVEDLENVFDFDAIRKAGLRLGVDPLGGATG------PYWKAIAERYGLDLTVV 256 (543)
T ss_pred HHHHHHHHHHhhChhhhhcCCceEEEecCCCCcH------HHHHHHHHHcCCcEEEe
Confidence 455777776665421 223468899999998763 35778999999876654
No 426
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.60 E-value=5.7e+02 Score=24.18 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=33.1
Q ss_pred HhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCC
Q 011290 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGD 176 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGD 176 (489)
+-+...++..|.++.+..+.. .....++.+.+...++|+||+.+-+
T Consensus 19 ~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~ 65 (269)
T cd06293 19 DAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTNR 65 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 567788888898887776553 3334466677766789999998744
No 427
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=22.44 E-value=1.6e+02 Score=27.38 Aligned_cols=55 Identities=9% Similarity=0.110 Sum_probs=38.5
Q ss_pred HHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhH
Q 011290 98 KLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH 154 (489)
Q Consensus 98 ~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~h 154 (489)
.|+..+.-..+..|++.|.++++|-||..- ...+...|..+|.++-++.....+.
T Consensus 5 ~l~~~l~~~~~~~kvI~v~s~kgG~GKTt~--a~~LA~~la~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 5 AIRTNIQFSGAEIKVLLITSVKPGEGKSTT--SANIAVAFAQAGYKTLLIDGDMRNS 59 (204)
T ss_pred HHHHHHhhhcCCCcEEEEecCCCCCCHHHH--HHHHHHHHHhCCCeEEEEeCCCCCh
Confidence 344444332333678999999999998753 2467778999999988887765443
No 428
>PLN02371 phosphoglucosamine mutase family protein
Probab=22.35 E-value=4.2e+02 Score=29.54 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhh-------c-CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEE
Q 011290 92 KRLWCEKLRDFIDS-------F-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT 145 (489)
Q Consensus 92 ~~~w~~~l~~~~~~-------~-~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~ 145 (489)
...|.+.|.+.+.. . .+-+++.|++++..|.+. ..+.++|+..|+++.
T Consensus 236 ~~~Y~~~l~~~i~~~~~~~~~~~~~~~~lkIvvD~~nGag~------~~~~~lL~~LG~~v~ 291 (583)
T PLN02371 236 MSTYAKHLRDAIKEGVGHPTNYETPLEGFKIVVDAGNGAGG------FFAEKVLEPLGADTS 291 (583)
T ss_pred HHHHHHHHHHHHHHhhccccccccCCCCCEEEEeCCCCchH------HHHHHHHHHcCCCeE
Confidence 45677777776642 1 123578999999998763 346788888898754
No 429
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.31 E-value=5.2e+02 Score=26.26 Aligned_cols=98 Identities=19% Similarity=0.218 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhhhhc----CCCcEE-EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHH
Q 011290 90 DSKRLWCEKLRDFIDSF----GRPKRL-YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKV 161 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~rpkr~-lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~ 161 (489)
+.++...+.+++.+... ++..++ .|.++ ...+...|.+.-....++.|++++.+.- ..+.+..+.+++
T Consensus 9 ~iA~~i~~~lk~~v~~l~~~~g~~p~LaiI~vg----dd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~ 84 (297)
T PRK14186 9 ALAAEIEQRLQAQIESNLPKAGRPPGLAVLRVG----DDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQ 84 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeC----CChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555666666655432 333344 44454 4446678888889999999999887654 234455566666
Q ss_pred hhc-CCCceEEEE---cCCChHHHHHHHhhcCcC
Q 011290 162 LDL-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (489)
Q Consensus 162 ~~~-~~~d~IV~v---GGDGtl~EVvnGL~~~~~ 191 (489)
+.. +..|+|++- -..-.-.++++.+--..|
T Consensus 85 lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KD 118 (297)
T PRK14186 85 LNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKD 118 (297)
T ss_pred HhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccC
Confidence 643 346787764 233334566666655444
No 430
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=22.27 E-value=1.5e+02 Score=28.64 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=38.2
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHH
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK 160 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~ 160 (489)
++..|.|.++|-||.-- .-.+.-.|...|.++-++.+..++++..+.+
T Consensus 2 ~iI~v~n~KGGvGKTT~--a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTA--LMGLCAALASDGKRVALFEADENRPLTRWKE 49 (231)
T ss_pred eEEEEECCCCCccHHHH--HHHHHHHHHhCCCcEEEEeCCCCCCHHHHHH
Confidence 57889999999998753 2467788888999999998888888776654
No 431
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=22.25 E-value=3.1e+02 Score=29.28 Aligned_cols=47 Identities=11% Similarity=0.014 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE
Q 011290 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~ 147 (489)
...|.+.|.+.++. .+++.|++++..|.+. ..+..+|+..|+++..+
T Consensus 149 ~~~Y~~~l~~~~~~---~~~~kVvvD~~~G~~~------~~~~~il~~lg~~v~~i 195 (449)
T PRK14321 149 KEEYIKAALEMIKL---ENSYTVVVDSGNGAGS------ILSPYLQRELGNKVISL 195 (449)
T ss_pred HHHHHHHHHHhcCc---CCCCEEEEECCCchHH------HHHHHHHHHcCCEEEEe
Confidence 45566766666532 3679999999888642 24667788888876543
No 432
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=22.18 E-value=1.8e+02 Score=30.67 Aligned_cols=66 Identities=12% Similarity=-0.011 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhh-hcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe-CChhHHHH
Q 011290 90 DSKRLWCEKLRDFID-SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-TQQLHAKE 157 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~-~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T-~~~~ha~e 157 (489)
++...|.+.+...-. ....+.+++.|.|.++|-||.-.. -.+.-.|...|..+-++.. ..++++..
T Consensus 85 ~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta--~nLA~~LA~~G~rVLlIDl~DpQ~nlt~ 152 (387)
T PHA02519 85 DQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSA--VHTAQWLALQGHRVLLIEGNDPQGTASM 152 (387)
T ss_pred HHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHH--HHHHHHHHhCCCcEEEEeCCCCCCCccc
Confidence 556667776643211 112234788999999999987643 3678889999999999984 87777654
No 433
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=21.90 E-value=1.6e+02 Score=24.15 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=31.9
Q ss_pred EEEEEEcCCCCCccccccc-hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEE
Q 011290 111 RLYIFVNPFGGKKIASKIF-LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~-~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~ 172 (489)
++++..+- |-|.... ..+++.+|++.|+++++..+.- .. +-..+ .++|.|++
T Consensus 4 kILvvCgs----G~~TS~m~~~ki~~~l~~~gi~~~v~~~~~-~e---~~~~~--~~~D~iv~ 56 (94)
T PRK10310 4 KIIVACGG----AVATSTMAAEEIKELCQSHNIPVELIQCRV-NE---IETYM--DGVHLICT 56 (94)
T ss_pred eEEEECCC----chhHHHHHHHHHHHHHHHCCCeEEEEEecH-HH---Hhhhc--CCCCEEEE
Confidence 67777653 3333333 5789999999999988776332 22 21222 46896654
No 434
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=21.87 E-value=2.3e+02 Score=24.17 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=39.3
Q ss_pred EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc---CCC-----hHHHHHH
Q 011290 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDG-----ILVEVVN 184 (489)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG---GDG-----tl~EVvn 184 (489)
+|++-- ..|..+++- +.+...+...|+++++....... . . ++.++|.||++. +.| .+.++++
T Consensus 2 ~Iiy~S--~tGnT~~~A-~~i~~~~~~~g~~v~~~~~~~~~-~----~--~l~~~d~iilgspty~~g~~p~~~~~~f~~ 71 (140)
T TIGR01753 2 LIVYAS--MTGNTEEMA-NIIAEGLKEAGAEVDLLEVADAD-A----E--DLLSYDAVLLGCSTWGDEDLEQDDFEPFFE 71 (140)
T ss_pred EEEEEC--CCcHHHHHH-HHHHHHHHhcCCeEEEEEcccCC-H----H--HHhcCCEEEEEcCCCCCCCCCcchHHHHHH
Confidence 455543 345555543 67888888888888777644321 1 1 234689888875 445 3456666
Q ss_pred Hhhc
Q 011290 185 GLLE 188 (489)
Q Consensus 185 GL~~ 188 (489)
-|..
T Consensus 72 ~l~~ 75 (140)
T TIGR01753 72 ELED 75 (140)
T ss_pred Hhhh
Confidence 5543
No 435
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.78 E-value=7.7e+02 Score=25.00 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHhh
Q 011290 92 KRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLD 163 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~----~-rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~~ 163 (489)
++.-.+.+++.+... + +|+=..|.+++ ..+...|.+.-....++.|+.++.+.-. .+.+..+.++++.
T Consensus 11 a~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~----d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN 86 (294)
T PRK14187 11 ANDITEILATCIDDLKRQHNLFPCLIVILVGD----DPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELN 86 (294)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCeEEEEEeCC----ChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 444444454444332 2 34333455544 4466688888899999999998877543 3444555666664
Q ss_pred c-CCCceEEEE---cCCChHHHHHHHhhcCcC
Q 011290 164 L-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (489)
Q Consensus 164 ~-~~~d~IV~v---GGDGtl~EVvnGL~~~~~ 191 (489)
. ...|+|++- -..-.-.++++.+--..|
T Consensus 87 ~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~KD 118 (294)
T PRK14187 87 NDDSVHGILVQLPVPNHIDKNLIINTIDPEKD 118 (294)
T ss_pred CCCCCCEEEEeCCCCCCCCHHHHHhccCcccC
Confidence 3 346777764 234445566666555444
No 436
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=21.78 E-value=4.1e+02 Score=24.65 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=32.7
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~ 180 (489)
+++.|++|... +. .....|+.+|.++..+. .. . ++++||+||+-||-++..
T Consensus 2 m~~~i~~~~g~--------~~-~~~~~l~~~g~~~~~~~--~~-------~--~l~~~dgiii~GG~~~~~ 52 (189)
T PRK13525 2 MKIGVLALQGA--------VR-EHLAALEALGAEAVEVR--RP-------E--DLDEIDGLILPGGESTTM 52 (189)
T ss_pred CEEEEEEcccC--------HH-HHHHHHHHCCCEEEEeC--Ch-------h--HhccCCEEEECCCChHHH
Confidence 46888888622 22 23355788887665542 21 1 345799999999987664
No 437
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=21.73 E-value=1.6e+02 Score=30.70 Aligned_cols=86 Identities=15% Similarity=0.288 Sum_probs=55.7
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE------eCChhHHHHHHHHh---hcCCCceEEEEcCCCh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE------TTQQLHAKEIVKVL---DLSKYDGIVCVSGDGI 178 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~------T~~~~ha~el~~~~---~~~~~d~IV~vGGDGt 178 (489)
..+++.|+.|+.=.. .|.+++...|+.+++.+..+. ++.-.+..++...+ ..++-+.||.+|| |.
T Consensus 32 ~~~k~~ivtd~~v~~-----~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGG-Gv 105 (360)
T COG0337 32 AGRKVAIVTDETVAP-----LYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGG-GV 105 (360)
T ss_pred cCCeEEEEECchhHH-----HHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECC-hH
Confidence 345899999986532 467889999999999874332 22223333333333 3456678999988 77
Q ss_pred HHHHHH---HhhcCcCccccCCCcEEEecCc
Q 011290 179 LVEVVN---GLLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 179 l~EVvn---GL~~~~~~~~~~~~plgiIP~~ 206 (489)
+-++.- +-+.| .+++-.||.+
T Consensus 106 igDlaGF~Aaty~R-------Gv~fiqiPTT 129 (360)
T COG0337 106 IGDLAGFAAATYMR-------GVRFIQIPTT 129 (360)
T ss_pred HHHHHHHHHHHHHc-------CCCeEeccch
Confidence 777543 23333 6888899984
No 438
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=21.62 E-value=5.6e+02 Score=26.58 Aligned_cols=77 Identities=14% Similarity=0.131 Sum_probs=49.4
Q ss_pred CCcEEEEEE-cCCCCCccccccchHhHHHHHHhCCCcEEEEEeC-----ChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 108 RPKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 108 rpkr~lvii-NP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~-----~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
+.+++.+|+ |-.-| .. ..+.++..+++.|+++...++- ...+...+++++...+.|+||+++.-.....
T Consensus 175 ~~k~vaii~~~~~~g----~~-~~~~~~~~l~~~gi~i~~~~~~~~~~~~~~d~~~~l~~i~~~~~dvIil~~~~~~~~~ 249 (410)
T cd06363 175 GWNWVAFLGSDDEYG----RD-GLQLFSELIANTGICIAYQGLIPLDTDPETDYQQILKQINQTKVNVIVVFASRQPAEA 249 (410)
T ss_pred CCcEEEEEEeCChhH----HH-HHHHHHHHHHHCCeEEEEEEEecCCCchHHHHHHHHHHHhcCCCeEEEEEcChHHHHH
Confidence 457777776 22222 22 2356778899899876543322 2456777888887778898888776666666
Q ss_pred HHHHhhcC
Q 011290 182 VVNGLLER 189 (489)
Q Consensus 182 VvnGL~~~ 189 (489)
++..+.+.
T Consensus 250 il~qa~~~ 257 (410)
T cd06363 250 FFNSVIQQ 257 (410)
T ss_pred HHHHHHhc
Confidence 77666543
No 439
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=21.56 E-value=2.5e+02 Score=28.88 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=35.6
Q ss_pred CCCcEEEEEEcCCCCCccc--cccchHhHHHHHHh---CCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcC
Q 011290 107 GRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLED---ANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a--~~~~~~~v~p~l~~---a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGG 175 (489)
.+||=...=+|||+|.+.- .+- .+.+.|.+++ .|+++. .+--|..+-......+||+||++==
T Consensus 200 ~~PrIaV~gLNPHAGE~G~~G~EE-~~iI~PAi~~~~~~G~~v~-----GP~paDt~F~~~~~~~~D~vvaMYH 267 (326)
T PRK03371 200 VKPRIAVAGVNPHAGENGLFGDEE-IRIVTPAIEAMRAKGMDVY-----GPCPPDTVFLQAYEGQYDMVVAMYH 267 (326)
T ss_pred CCCCEEEEeeCCCCCCCCCCcHHH-HHHHHHHHHHHHHCCCccc-----CCCCchhhcccccccCCCEEEEccc
Confidence 5665556669999998532 111 1345666555 455432 3333433334444468999998643
No 440
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=21.36 E-value=2.3e+02 Score=29.54 Aligned_cols=49 Identities=10% Similarity=0.073 Sum_probs=38.7
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEI 158 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el 158 (489)
.+.+++.|.|.++|-||..-. -.+.-.|...|..+-++....++.+...
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a--~nLA~~La~~G~rVLlID~DpQ~~ls~~ 150 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTA--AHLAQYLALRGYRVLAIDLDPQASLSAL 150 (387)
T ss_pred CCceEEEEEccCCCcCHHHHH--HHHHHHHHhcCCCEEEEecCCCCCHHHH
Confidence 455899999999999987643 3577788889999999988887765543
No 441
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=21.35 E-value=1.8e+02 Score=23.17 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=31.3
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGD 176 (489)
+..++...|..+|+.+.+.. .......-.+.++..++-.++++|-+
T Consensus 17 ~a~~l~~~L~~~gi~v~~d~--~~~~~~k~~~~a~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 17 YAQELANKLRKAGIRVELDD--SDKSLGKQIKYADKLGIPFIIIIGEK 62 (94)
T ss_dssp HHHHHHHHHHHTTSEEEEES--SSSTHHHHHHHHHHTTESEEEEEEHH
T ss_pred HHHHHHHHHHHCCCEEEEEC--CCCchhHHHHHHhhcCCeEEEEECch
Confidence 44678888888998777664 33334444566666678888888854
No 442
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=21.33 E-value=2.7e+02 Score=24.00 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=24.1
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~ 147 (489)
.+.++.||..++- ++++..|+.+|++++++
T Consensus 2 ~itiy~~p~C~t~-------rka~~~L~~~gi~~~~~ 31 (117)
T COG1393 2 MITIYGNPNCSTC-------RKALAWLEEHGIEYTFI 31 (117)
T ss_pred eEEEEeCCCChHH-------HHHHHHHHHcCCCcEEE
Confidence 4678999998753 46788899999998765
No 443
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=21.31 E-value=5.5e+02 Score=25.52 Aligned_cols=77 Identities=9% Similarity=-0.004 Sum_probs=46.6
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.+++.++. +...-++. +.+.++..++++|.++.... .....+...++.++...+.|.|++.+..+-.-.++..+
T Consensus 135 ~~~v~~i~-~~~~~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~ 210 (334)
T cd06327 135 GKKWFFLT-ADYAFGHS---LERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASGADVLVLANAGADTVNAIKQA 210 (334)
T ss_pred CCeEEEEe-cchHHhHH---HHHHHHHHHHhcCCEEcCcccCCCCCccHHHHHHHHHhCCCCEEEEeccchhHHHHHHHH
Confidence 46666554 44433332 23578888999998763322 12234455667777667899888887666555566655
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
.+.
T Consensus 211 ~~~ 213 (334)
T cd06327 211 AEF 213 (334)
T ss_pred HHh
Confidence 443
No 444
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=21.26 E-value=2.5e+02 Score=28.98 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=36.1
Q ss_pred hcCCCcEEEEEEcCCCCCccc--cccchHhHHHHHHh---CCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc
Q 011290 105 SFGRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLED---ANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 105 ~~~rpkr~lviiNP~sG~~~a--~~~~~~~v~p~l~~---a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG 174 (489)
...+||=...=+|||+|.+-- .+- .+.+.|..+. .|+++ ..+--|..+-......+||+||++=
T Consensus 199 gi~~PrIaV~gLNPHAGE~G~~G~EE-~~iI~PAI~~~~~~G~~v-----~GP~paDt~F~~~~~~~~D~vvaMY 267 (332)
T PRK00232 199 GIAEPRIAVCGLNPHAGEGGHFGREE-IDIIIPALEELRAEGINL-----VGPLPADTLFQPAYLGDADAVLAMY 267 (332)
T ss_pred CCCCCcEEEEeeCCCCCCCCCCCHHH-HHHHHHHHHHHHhCCCCc-----CCCCCchhhccccccCCCCEEEECc
Confidence 345676556669999998542 111 1345665555 45543 2333344433444446899999753
No 445
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=21.14 E-value=3.8e+02 Score=28.43 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC----------hhHHHHHHH
Q 011290 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVK 160 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~----------~~ha~el~~ 160 (489)
....+.+.+.+.+. +-+++-|++++..|.+. ..+.++|+..|+++..+..+. +.+..++.+
T Consensus 156 ~~~~Y~~~l~~~~~---~~~~~kVvvD~~~G~~~------~~~~~ll~~lG~~v~~l~~~~dg~~~~~~~~~~~l~~l~~ 226 (440)
T PRK14323 156 AERLYLDFLLSHAP---DLSGLKVALDCANGAAY------RLAPKVFQAAGADVFALFNTPDGRNINRGCGSTHPEALQR 226 (440)
T ss_pred HHHHHHHHHHHhcc---cccCCEEEEECCCchHH------HHHHHHHHHcCCcEEEEeccCCCCcCCCCCCCCCHHHHHH
Confidence 34456666655432 22468899999988752 245668888898765543221 123333433
Q ss_pred HhhcCCCceEEEEcCCC
Q 011290 161 VLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 161 ~~~~~~~d~IV~vGGDG 177 (489)
.....++|.-++.=|||
T Consensus 227 ~v~~~~adlGia~DgD~ 243 (440)
T PRK14323 227 FVVEGGLDLGVAFDGDA 243 (440)
T ss_pred HHhccCCCEEEEeCCCc
Confidence 33334566666666666
No 446
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=21.09 E-value=2.1e+02 Score=29.05 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=34.8
Q ss_pred hHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011290 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 132 ~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDG 177 (489)
++...|+++|+.+-+.......|+.+..+.+.+.+|=-+|++|||-
T Consensus 153 EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv 198 (301)
T TIGR01684 153 DSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHK 198 (301)
T ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCcc
Confidence 4566788889988888878888999888888877653356666654
No 447
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=20.98 E-value=7.4e+02 Score=24.97 Aligned_cols=86 Identities=9% Similarity=-0.028 Sum_probs=47.9
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC---hhHHHHHHHHhhcCCCceEEEEcCCChH-HHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVV 183 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~---~~ha~el~~~~~~~~~d~IV~vGGDGtl-~EVv 183 (489)
+.+.+.|++ |.....--.. ..+-++..+++.|.++.+..+.. ...-.+..+.+...++|+||+++.|..- .+.+
T Consensus 45 ~t~~Igvv~-p~~~~~f~~~-~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~~~~~~~~l 122 (343)
T PRK10936 45 KAWKLCALY-PHLKDSYWLS-VNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVTPDGLNPDL 122 (343)
T ss_pred CCeEEEEEe-cCCCchHHHH-HHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHH
Confidence 344555555 5433221122 22457777788888877776542 2222344555555789999999877443 2344
Q ss_pred HHhhcCcCccccCCCcEEEe
Q 011290 184 NGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 184 nGL~~~~~~~~~~~~plgiI 203 (489)
.+.+ ..+|+-.+
T Consensus 123 -~~~~-------~giPvV~~ 134 (343)
T PRK10936 123 -ELQA-------ANIPVIAL 134 (343)
T ss_pred -HHHH-------CCCCEEEe
Confidence 2322 25777655
No 448
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=20.93 E-value=4.7e+02 Score=24.83 Aligned_cols=66 Identities=9% Similarity=0.201 Sum_probs=42.6
Q ss_pred HhHHHHHHhCCCcEEEEEeCChh-HHHHHHHHhhcCCCceEEEEcCCCh----HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI----LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~-ha~el~~~~~~~~~d~IV~vGGDGt----l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+-++..+++.|+.+.+..++... ...+..+++-..++|+|++.+++.. ..+.++-+... .+|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~~-------~ipvV~~ 89 (273)
T cd01541 19 RGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKL-------GIPYVFI 89 (273)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHHHHC-------CCCEEEE
Confidence 56778888889888776654332 2345566666678999999987653 22455555433 4665554
No 449
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.88 E-value=3.5e+02 Score=25.57 Aligned_cols=47 Identities=13% Similarity=0.187 Sum_probs=32.8
Q ss_pred HhHHHHHHhCCCcEEEEEeCChh-HHHHHHHHhhcCCCceEEEEcCCC
Q 011290 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~-ha~el~~~~~~~~~d~IV~vGGDG 177 (489)
+.++..++..|..+.+..+.... ...++.+.+...+.|+|++++.|-
T Consensus 19 ~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~ 66 (265)
T cd06290 19 KGMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGGDL 66 (265)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 46777888888887776554322 233556677667899999998763
No 450
>PRK12616 pyridoxal kinase; Reviewed
Probab=20.82 E-value=1.7e+02 Score=28.75 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=15.3
Q ss_pred CcccccceeccccccCCCCcHHHHH
Q 011290 210 AGTGNGMIKSLLDLVGEPCKASNAI 234 (489)
Q Consensus 210 ~GSgN~~a~sl~~~~g~~~~~~~A~ 234 (489)
.|+|+.|+-.+....-...++.+|+
T Consensus 212 ~GaGD~fsaalaa~l~~g~~l~~Av 236 (270)
T PRK12616 212 HGAGCTFSAAVTAELAKGSEVKEAI 236 (270)
T ss_pred CcHHHHHHHHHHHHHHCCCCHHHHH
Confidence 4999999877754322233555554
No 451
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.80 E-value=6e+02 Score=25.64 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhhhhc----CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHh
Q 011290 90 DSKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVL 162 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~ 162 (489)
+.++...+.|++.+... ++..++.+|. .|...+...|.+.-....++.|+.++.+.-. .+.+..+.++++
T Consensus 8 ~~A~~i~~~l~~~v~~l~~~~g~~P~LaiI~---vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~l 84 (285)
T PRK14191 8 ALSYKIEKDLKNKIQILTAQTGKRPKLAVIL---VGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDL 84 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCeEEEEE---eCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34555555666555432 2333454442 2445567789888899999999998876543 234455556666
Q ss_pred hc-CCCceEEEEc---CCChHHHHHHHhhcCcC
Q 011290 163 DL-SKYDGIVCVS---GDGILVEVVNGLLERED 191 (489)
Q Consensus 163 ~~-~~~d~IV~vG---GDGtl~EVvnGL~~~~~ 191 (489)
.. +..|+|++-= ..=.-.++++.+--..|
T Consensus 85 N~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KD 117 (285)
T PRK14191 85 NTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKD 117 (285)
T ss_pred hCCCCCCEEEEeCCCCCCCCHHHHHhcCCcccc
Confidence 43 3567777642 23334455555544443
No 452
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.80 E-value=1.3e+02 Score=25.11 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=22.9
Q ss_pred EeeEEecCCCHHHHHHHHHHHHHhhh
Q 011290 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (489)
.+.+++..+++++-+.|.++|.+++.
T Consensus 73 ~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 47799999999999999999988764
No 453
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=20.76 E-value=4e+02 Score=26.29 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=45.1
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEE---EEEeC-ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT---VQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~---v~~T~-~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
.+++.+|..|......+...+ +-.+..|+++|+++. +.... ....+.+.++++-..++|+|+| .+|.+-..+++
T Consensus 176 ~~~I~~i~g~~~~~~~~~~R~-~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p~ai~~-~~d~~A~g~~~ 253 (329)
T TIGR01481 176 HKSIAFVGGPLSDSINGEDRL-EGYKEALNKAGIQFGEDLVCEGKYSYDAGYKAFAELKGSLPTAVFV-ASDEMAAGILN 253 (329)
T ss_pred CCeEEEEecCcccccchHHHH-HHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHHhCCCCCEEEE-cCcHHHHHHHH
Confidence 467777765543221112222 345667778887543 22222 2344566666654345676555 77888888888
Q ss_pred HhhcC
Q 011290 185 GLLER 189 (489)
Q Consensus 185 GL~~~ 189 (489)
.|-+.
T Consensus 254 al~~~ 258 (329)
T TIGR01481 254 AAMDA 258 (329)
T ss_pred HHHHc
Confidence 88765
No 454
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=20.76 E-value=1.1e+02 Score=23.46 Aligned_cols=24 Identities=25% Similarity=0.663 Sum_probs=21.1
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~ 103 (489)
..+.|.+.+.++...|.++|+..+
T Consensus 78 ~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 588999999999999999998764
No 455
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=20.71 E-value=2.2e+02 Score=29.17 Aligned_cols=67 Identities=18% Similarity=0.316 Sum_probs=44.4
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe----------CChhHHHHHHHHhhcCCCceEEEE-cCCCh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----------TQQLHAKEIVKVLDLSKYDGIVCV-SGDGI 178 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T----------~~~~ha~el~~~~~~~~~d~IV~v-GGDGt 178 (489)
....=||-|.|+-. +.+.. ++....|+..|+++..-.. .....|.++.+.+..+..+.|.|+ ||+|+
T Consensus 10 gd~I~iIaPSs~~~-~~~~~-~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGygs 87 (313)
T COG1619 10 GDEIGIIAPSSGAT-ATDAL-KRAIQRLENLGFEVVFGEHILRRDQYFAGSDEERAEDLMSAFSDPDVKAILCVRGGYGS 87 (313)
T ss_pred CCEEEEEecCcccc-hHHHH-HHHHHHHHHcCCEEEechhhhhccccccCCHHHHHHHHHHHhcCCCCeEEEEcccCCCh
Confidence 34566788988877 44444 5788899999987765332 112445566666655667776664 89996
No 456
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=20.70 E-value=2.3e+02 Score=29.03 Aligned_cols=62 Identities=26% Similarity=0.390 Sum_probs=33.9
Q ss_pred CCCcEEEEEEcCCCCCcccc--ccchHhHHHHHHh---CCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc
Q 011290 107 GRPKRLYIFVNPFGGKKIAS--KIFLDDVKPLLED---ANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~--~~~~~~v~p~l~~---a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG 174 (489)
.+|+=...=+|||+|.+..- +- .+.+.|..+. .|+.+. .+--|..+-.+....+||+||++=
T Consensus 194 ~~PrIaV~gLNPHAGE~G~~G~EE-~~iI~PAI~~~~~~G~~v~-----GP~paDt~F~~~~~~~~D~vvaMY 260 (320)
T TIGR00557 194 ARPRIAVAGLNPHAGEGGHLGREE-IDIIIPALEALRAEGIDLI-----GPLPADTLFHPAALAKYDAVLAMY 260 (320)
T ss_pred CCCCEEEEecCCCCCCCCCCcHHH-HHHHHHHHHHHHHCCCccc-----CCCCchhhcccccccCCCEEEECc
Confidence 55665566799999985431 10 1345555555 455431 333333333333446899999753
No 457
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=20.66 E-value=4.7e+02 Score=25.50 Aligned_cols=74 Identities=18% Similarity=0.112 Sum_probs=47.3
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~--~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
+.||.++.+-| +.+|+..++.++..-.++--++.+.. ..++.++.+ ........++.||+.--..|.|
T Consensus 21 ~~pKq~l~l~g--------~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~~~~~~v~~v~GG~~R~~SV~~ 90 (230)
T COG1211 21 PVPKQYLELGG--------RPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--LSADKRVEVVKGGATRQESVYN 90 (230)
T ss_pred CCCceEEEECC--------EEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--hccCCeEEEecCCccHHHHHHH
Confidence 45666655532 44676667776666666544444433 333444443 2345568899999999999999
Q ss_pred HhhcCc
Q 011290 185 GLLERE 190 (489)
Q Consensus 185 GL~~~~ 190 (489)
||..-+
T Consensus 91 gL~~~~ 96 (230)
T COG1211 91 GLQALS 96 (230)
T ss_pred HHHHhh
Confidence 998764
No 458
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=20.59 E-value=5.2e+02 Score=21.74 Aligned_cols=90 Identities=12% Similarity=-0.012 Sum_probs=47.5
Q ss_pred EecCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHh
Q 011290 83 VFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL 162 (489)
Q Consensus 83 ~~~~~~~~~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~ 162 (489)
.|....|..|..-...|.++........=..|.||...-... ...+.++..+++.++.+.+..-. ..++.+.+
T Consensus 29 ~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~D~----~~~~~~~~ 101 (126)
T cd03012 29 DFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFE---RDLANVKSAVLRYGITYPVANDN----DYATWRAY 101 (126)
T ss_pred EEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccc---cCHHHHHHHHHHcCCCCCEEECC----chHHHHHh
Confidence 334444555555555555555444322222344443110011 11257888888888887765422 23455666
Q ss_pred hcCCCceEEEEcCCChH
Q 011290 163 DLSKYDGIVCVSGDGIL 179 (489)
Q Consensus 163 ~~~~~d~IV~vGGDGtl 179 (489)
.....-..+++.-||.+
T Consensus 102 ~v~~~P~~~vid~~G~v 118 (126)
T cd03012 102 GNQYWPALYLIDPTGNV 118 (126)
T ss_pred CCCcCCeEEEECCCCcE
Confidence 55556677778888864
No 459
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.48 E-value=1.3e+02 Score=25.94 Aligned_cols=27 Identities=7% Similarity=0.309 Sum_probs=22.6
Q ss_pred EeeEEecCCCHHHHHHHHHHHHHhhhh
Q 011290 79 RKDFVFEPLSEDSKRLWCEKLRDFIDS 105 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (489)
++.+.|...++++.+.|.++|+..+.+
T Consensus 89 ~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 89 HSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred ceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 356778899999999999999888753
No 460
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.46 E-value=1.1e+02 Score=24.97 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=20.0
Q ss_pred eeEEecCCCHHHHHHHHHHHHHh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDF 102 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~ 102 (489)
+.+.|...|+++.+.|+++|+..
T Consensus 71 r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 71 EVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred cEEEEECCCHHHHHHHHHHHHhh
Confidence 56899999999999999998754
No 461
>PRK08250 glutamine amidotransferase; Provisional
Probab=20.44 E-value=1.5e+02 Score=28.85 Aligned_cols=44 Identities=9% Similarity=0.069 Sum_probs=28.9
Q ss_pred hHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011290 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 132 ~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~ 180 (489)
.+.+.++.+|++++++.... +.. + ..+.++||+||+.||=.+.+
T Consensus 16 ~~~~~~~~~g~~~~~~~~~~-g~~--~--p~~~~~~d~vii~GGp~~~~ 59 (235)
T PRK08250 16 AYLKWAENRGYDISYSRVYA-GEA--L--PENADGFDLLIVMGGPQSPR 59 (235)
T ss_pred HHHHHHHHCCCeEEEEEccC-CCC--C--CCCccccCEEEECCCCCChh
Confidence 56778888999888865332 211 1 01345799999999965543
No 462
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=20.34 E-value=2.8e+02 Score=28.61 Aligned_cols=62 Identities=21% Similarity=0.357 Sum_probs=35.6
Q ss_pred CCCcEEEEEEcCCCCCccc--cccchHhHHHHHHhC---CCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc
Q 011290 107 GRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDA---NIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a--~~~~~~~v~p~l~~a---~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG 174 (489)
.+|+=...=+|||+|.+.- .+- .+.+.|.++++ |+++ ..+--|..+-......+||+||++=
T Consensus 201 ~~PrIaV~GLNPHAGE~G~~G~EE-~~iI~PAI~~~~~~g~~v-----~GP~paDt~F~~~~~~~~D~vvaMY 267 (332)
T PRK03743 201 KNPKIAVAGLNPHSGEHGLFGDEE-VDEIIPAVEAAQEMGINV-----EGPVPADSVFHLALQGRYDAVLSLY 267 (332)
T ss_pred CCCCEEEEeeCCCCCCCCCCcHHH-HHHHHHHHHHHHHCCCcc-----cCCCCchhhcccccccCCCEEEEcc
Confidence 5665555669999998532 221 13456666653 5543 2343444444444456899999753
No 463
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=20.24 E-value=3.5e+02 Score=27.37 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=37.7
Q ss_pred hhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc
Q 011290 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 103 ~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG 174 (489)
+.....-+++.||++-.+|++.-. +. ++++.+++.+|.++-++.....+-+ +-....+.|..|.++
T Consensus 203 i~ka~~a~~~GIiv~tl~~q~~~~-~~-~~l~~~l~~~gkk~y~~~~~~i~~~----kL~nf~eid~fV~~a 268 (307)
T PF01866_consen 203 IEKAKDAKTFGIIVGTLGGQGYLE-LI-KRLKKLLKKAGKKSYTLSVGEINPA----KLANFPEIDAFVQIA 268 (307)
T ss_dssp HHHHTT--EEEEEEE-STTT--HH-HH-HHHHHHHHHTT-EEEEEEESS--GG----GGTTS---SEEEE-S
T ss_pred HHHHhcCCEEEEEEecCCCCCCHH-HH-HHHHHHHHHcCCEEEEEEECCCCHH----HHhcCcccCEEEEec
Confidence 334455689999999999998754 44 6899999999998777666654432 122234577777655
Done!