Query 011290
Match_columns 489
No_of_seqs 240 out of 1464
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 05:05:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 3E-50 1E-54 405.4 24.1 291 107-488 6-298 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 3.6E-46 1.2E-50 380.8 25.4 291 109-488 24-316 (337)
3 2bon_A Lipid kinase; DAG kinas 100.0 1.3E-44 4.6E-49 368.5 18.8 288 108-488 28-317 (332)
4 2an1_A Putative kinase; struct 99.5 7.5E-15 2.6E-19 146.2 7.1 113 109-243 5-122 (292)
5 1yt5_A Inorganic polyphosphate 99.4 1.4E-12 5E-17 127.5 11.8 99 110-243 1-99 (258)
6 1u0t_A Inorganic polyphosphate 99.3 2.5E-12 8.4E-17 129.1 9.0 114 109-244 4-135 (307)
7 2i2c_A Probable inorganic poly 99.2 1.9E-11 6.4E-16 120.6 8.5 95 110-243 1-96 (272)
8 3afo_A NADH kinase POS5; alpha 98.0 6.2E-06 2.1E-10 84.8 5.7 114 107-243 39-174 (388)
9 1z0s_A Probable inorganic poly 96.7 0.0043 1.5E-07 60.7 8.6 94 109-239 29-122 (278)
10 3pfn_A NAD kinase; structural 95.6 0.06 2E-06 54.6 10.6 118 103-243 32-167 (365)
11 1o2d_A Alcohol dehydrogenase, 95.1 0.12 4E-06 52.5 11.1 109 99-216 32-156 (371)
12 3ce9_A Glycerol dehydrogenase; 94.1 0.17 5.7E-06 50.9 9.4 84 110-206 35-121 (354)
13 3uhj_A Probable glycerol dehyd 93.8 0.11 3.6E-06 53.3 7.3 90 110-215 53-145 (387)
14 1jq5_A Glycerol dehydrogenase; 93.4 0.094 3.2E-06 53.1 6.1 92 110-216 32-126 (370)
15 3bfj_A 1,3-propanediol oxidore 93.4 0.37 1.3E-05 49.0 10.6 94 109-205 33-142 (387)
16 3ox4_A Alcohol dehydrogenase 2 93.0 0.25 8.7E-06 50.3 8.7 100 99-205 22-138 (383)
17 3okf_A 3-dehydroquinate syntha 92.9 0.35 1.2E-05 49.4 9.5 89 108-206 61-158 (390)
18 1vlj_A NADH-dependent butanol 92.8 0.34 1.2E-05 49.7 9.4 92 110-205 44-151 (407)
19 1rrm_A Lactaldehyde reductase; 91.8 0.24 8.1E-06 50.4 6.7 92 109-205 31-140 (386)
20 1ta9_A Glycerol dehydrogenase; 91.7 0.21 7E-06 52.1 6.2 91 110-216 92-185 (450)
21 1sg6_A Pentafunctional AROM po 90.2 0.61 2.1E-05 47.6 8.0 95 109-216 36-147 (393)
22 1kq3_A Glycerol dehydrogenase; 88.7 0.17 5.9E-06 51.3 2.4 91 110-215 42-133 (376)
23 1oj7_A Hypothetical oxidoreduc 87.4 0.83 2.8E-05 46.7 6.7 90 110-205 51-159 (408)
24 3hl0_A Maleylacetate reductase 86.4 0.58 2E-05 47.1 4.7 83 109-206 34-120 (353)
25 3qbe_A 3-dehydroquinate syntha 86.3 2.4 8.1E-05 42.9 9.2 85 110-205 44-137 (368)
26 3jzd_A Iron-containing alcohol 86.3 1.2 4E-05 44.9 6.9 83 109-206 36-122 (358)
27 2gru_A 2-deoxy-scyllo-inosose 84.2 3.1 0.00011 41.8 9.0 87 108-205 33-128 (368)
28 3rf7_A Iron-containing alcohol 79.2 5.3 0.00018 40.4 8.4 96 109-216 53-167 (375)
29 1xah_A Sadhqs, 3-dehydroquinat 78.0 4.2 0.00014 40.6 7.3 84 110-205 32-124 (354)
30 3clh_A 3-dehydroquinate syntha 74.1 2.8 9.5E-05 41.8 4.7 88 109-206 26-120 (343)
31 3iv7_A Alcohol dehydrogenase I 74.1 1.1 3.9E-05 45.1 1.8 81 109-206 37-121 (364)
32 3f6r_A Flavodoxin; FMN binding 70.5 6 0.0002 33.6 5.4 86 110-205 2-93 (148)
33 3jy6_A Transcriptional regulat 68.8 30 0.001 32.0 10.5 88 107-205 5-93 (276)
34 1pfk_A Phosphofructokinase; tr 67.2 10 0.00034 37.5 6.8 52 154-218 82-133 (320)
35 1zxx_A 6-phosphofructokinase; 66.0 8.7 0.0003 37.9 6.1 53 153-218 80-132 (319)
36 3ors_A N5-carboxyaminoimidazol 65.9 37 0.0013 30.0 9.5 59 130-188 19-81 (163)
37 3lft_A Uncharacterized protein 65.1 24 0.00081 33.3 9.1 77 107-188 131-207 (295)
38 2hig_A 6-phospho-1-fructokinas 64.3 6.7 0.00023 41.0 5.2 96 110-218 130-234 (487)
39 3o74_A Fructose transport syst 64.3 18 0.0006 33.3 7.8 88 109-205 2-90 (272)
40 3l6u_A ABC-type sugar transpor 64.0 30 0.001 32.2 9.4 90 107-205 6-97 (293)
41 4h1h_A LMO1638 protein; MCCF-l 62.9 6.7 0.00023 38.8 4.7 69 110-179 12-92 (327)
42 2iks_A DNA-binding transcripti 62.8 27 0.00092 32.7 8.9 90 107-205 18-108 (293)
43 3l49_A ABC sugar (ribose) tran 62.8 35 0.0012 31.6 9.7 89 108-205 4-94 (291)
44 1pyo_A Caspase-2; apoptosis, c 62.8 27 0.00091 30.9 8.2 70 101-170 24-104 (167)
45 3m9w_A D-xylose-binding peripl 62.5 49 0.0017 31.1 10.9 87 110-205 3-91 (313)
46 3n7t_A Macrophage binding prot 62.4 37 0.0013 31.9 9.7 94 109-205 9-146 (247)
47 2fep_A Catabolite control prot 62.0 37 0.0013 31.7 9.7 89 107-205 14-103 (289)
48 4grd_A N5-CAIR mutase, phospho 61.8 49 0.0017 29.4 9.6 74 111-189 14-91 (173)
49 3egc_A Putative ribose operon 61.4 25 0.00087 32.7 8.4 89 107-205 6-95 (291)
50 2lnd_A De novo designed protei 60.4 21 0.00072 27.6 6.0 59 98-162 39-98 (112)
51 3p45_A Caspase-6; protease, hu 60.3 22 0.00074 32.0 7.1 69 103-171 37-115 (179)
52 3d8u_A PURR transcriptional re 59.8 28 0.00095 32.0 8.3 88 108-205 2-90 (275)
53 3brq_A HTH-type transcriptiona 59.5 48 0.0016 30.6 10.0 89 107-205 17-109 (296)
54 3gbv_A Putative LACI-family tr 58.9 30 0.001 32.2 8.5 91 107-205 6-102 (304)
55 4a3s_A 6-phosphofructokinase; 58.2 16 0.00055 35.9 6.5 50 156-218 83-132 (319)
56 3h75_A Periplasmic sugar-bindi 58.2 45 0.0015 32.1 9.8 68 131-205 24-94 (350)
57 3opy_A 6-phosphofructo-1-kinas 57.8 10 0.00035 42.8 5.4 59 154-218 676-734 (989)
58 1ujn_A Dehydroquinate synthase 57.8 15 0.0005 36.6 6.2 84 109-205 28-118 (348)
59 3lp6_A Phosphoribosylaminoimid 57.7 49 0.0017 29.5 8.8 73 111-188 9-85 (174)
60 3c3k_A Alanine racemase; struc 57.6 44 0.0015 31.0 9.4 87 107-204 6-93 (285)
61 3tb6_A Arabinose metabolism tr 57.5 47 0.0016 30.7 9.6 87 110-205 16-107 (298)
62 3kuu_A Phosphoribosylaminoimid 57.0 62 0.0021 28.8 9.4 73 111-188 14-90 (174)
63 3oow_A Phosphoribosylaminoimid 56.4 63 0.0021 28.6 9.2 73 111-188 7-83 (166)
64 2qh8_A Uncharacterized protein 56.1 29 0.00099 32.8 7.9 75 107-186 138-212 (302)
65 2iuf_A Catalase; oxidoreductas 56.0 3.2 0.00011 45.2 1.0 86 110-205 530-640 (688)
66 2fn9_A Ribose ABC transporter, 55.8 42 0.0014 31.1 8.9 87 110-205 3-91 (290)
67 3e4c_A Caspase-1; zymogen, inf 55.6 33 0.0011 33.4 8.1 79 93-171 41-129 (302)
68 1qtn_A Caspase-8; apoptosis, d 55.5 41 0.0014 29.6 8.1 66 106-171 19-101 (164)
69 4eys_A MCCC family protein; MC 55.4 11 0.00039 37.4 4.9 74 111-186 6-93 (346)
70 3l4e_A Uncharacterized peptida 55.2 16 0.00053 33.6 5.5 62 110-176 28-89 (206)
71 2rgy_A Transcriptional regulat 54.8 27 0.00091 32.7 7.3 89 107-205 6-98 (290)
72 3fni_A Putative diflavin flavo 54.8 29 0.00098 30.1 6.9 60 110-174 5-64 (159)
73 3opy_B 6-phosphofructo-1-kinas 54.7 15 0.00051 41.4 6.1 58 155-218 651-708 (941)
74 2x7x_A Sensor protein; transfe 54.6 49 0.0017 31.5 9.3 89 107-205 4-95 (325)
75 2h54_A Caspase-1; allosteric s 54.1 22 0.00076 31.8 6.2 68 110-177 43-119 (178)
76 2fqx_A Membrane lipoprotein TM 54.1 38 0.0013 32.5 8.5 89 109-205 4-94 (318)
77 1rw7_A YDR533CP; alpha-beta sa 53.9 37 0.0013 31.5 8.0 45 165-218 97-146 (243)
78 8abp_A L-arabinose-binding pro 53.4 54 0.0018 30.5 9.3 67 131-204 22-89 (306)
79 2dko_A Caspase-3; low barrier 53.3 41 0.0014 29.0 7.6 64 107-170 13-86 (146)
80 3hno_A Pyrophosphate-dependent 53.3 24 0.00082 36.1 7.0 60 152-218 90-149 (419)
81 1dbq_A Purine repressor; trans 53.0 64 0.0022 29.7 9.7 89 108-205 6-95 (289)
82 3qk7_A Transcriptional regulat 52.7 27 0.00094 32.7 7.0 90 107-205 4-96 (294)
83 3k9c_A Transcriptional regulat 52.3 52 0.0018 30.6 8.9 87 107-205 10-96 (289)
84 3o8l_A 6-phosphofructokinase, 51.9 18 0.00062 39.9 6.1 58 156-218 99-171 (762)
85 3o8o_B 6-phosphofructokinase s 51.8 15 0.0005 40.6 5.4 58 155-218 473-530 (766)
86 3kjx_A Transcriptional regulat 51.6 1E+02 0.0035 29.4 11.2 86 108-203 67-153 (344)
87 2lqo_A Putative glutaredoxin R 51.6 20 0.0007 28.2 4.9 35 129-163 16-50 (92)
88 3dbi_A Sugar-binding transcrip 51.4 94 0.0032 29.5 10.9 90 107-205 59-151 (338)
89 3rpe_A MDAB, modulator of drug 51.1 20 0.00067 33.3 5.5 45 106-150 22-69 (218)
90 1zl0_A Hypothetical protein PA 51.1 18 0.00063 35.4 5.5 65 111-178 18-93 (311)
91 3k4h_A Putative transcriptiona 51.0 36 0.0012 31.5 7.6 89 107-205 6-100 (292)
92 2fvy_A D-galactose-binding per 50.7 80 0.0027 29.3 10.0 68 131-205 22-92 (309)
93 3g1w_A Sugar ABC transporter; 50.5 43 0.0015 31.2 8.1 89 108-205 3-94 (305)
94 3lkv_A Uncharacterized conserv 50.5 46 0.0016 31.7 8.3 77 107-188 138-214 (302)
95 3l7n_A Putative uncharacterize 50.1 18 0.00062 33.5 5.1 57 110-178 1-57 (236)
96 3bil_A Probable LACI-family tr 49.0 52 0.0018 31.8 8.6 88 108-205 65-153 (348)
97 3kkl_A Probable chaperone prot 48.9 59 0.002 30.4 8.5 38 165-205 97-139 (244)
98 3h5o_A Transcriptional regulat 48.5 95 0.0033 29.6 10.4 87 107-203 60-147 (339)
99 2o20_A Catabolite control prot 48.3 67 0.0023 30.6 9.2 89 107-205 61-150 (332)
100 3o1i_D Periplasmic protein TOR 47.7 32 0.0011 32.1 6.6 87 107-203 3-93 (304)
101 3o8l_A 6-phosphofructokinase, 47.0 18 0.0006 40.0 5.0 59 154-218 477-535 (762)
102 3e3m_A Transcriptional regulat 46.5 96 0.0033 29.8 10.1 87 107-203 68-155 (355)
103 3snr_A Extracellular ligand-bi 46.2 49 0.0017 31.5 7.8 78 108-189 134-213 (362)
104 3ej6_A Catalase-3; heme, hydro 45.5 12 0.0004 40.8 3.3 84 110-205 538-638 (688)
105 3o8o_A 6-phosphofructokinase s 45.4 23 0.00079 39.2 5.7 58 155-218 472-529 (787)
106 3lkb_A Probable branched-chain 45.3 65 0.0022 31.3 8.7 77 109-189 143-221 (392)
107 2ql9_A Caspase-7; cysteine pro 45.2 47 0.0016 29.6 6.8 65 106-170 40-114 (173)
108 1vhq_A Enhancing lycopene bios 44.9 45 0.0015 30.7 7.0 14 165-178 89-102 (232)
109 3loq_A Universal stress protei 44.7 1.9E+02 0.0066 26.7 12.5 69 130-205 216-290 (294)
110 1jx6_A LUXP protein; protein-l 44.4 1.9E+02 0.0065 27.2 11.8 57 131-188 64-126 (342)
111 2vk2_A YTFQ, ABC transporter p 44.1 51 0.0018 30.9 7.5 68 131-205 22-91 (306)
112 3od5_A Caspase-6; caspase doma 43.9 45 0.0015 32.0 6.9 110 106-220 17-149 (278)
113 3sbx_A Putative uncharacterize 43.5 24 0.00081 32.0 4.6 46 153-205 31-77 (189)
114 3o8o_A 6-phosphofructokinase s 43.4 22 0.00075 39.3 5.1 57 157-218 90-161 (787)
115 3h11_B Caspase-8; cell death, 43.3 1.8E+02 0.0061 27.5 11.1 111 103-218 10-151 (271)
116 3brs_A Periplasmic binding pro 43.3 50 0.0017 30.4 7.2 89 108-205 4-98 (289)
117 1mkz_A Molybdenum cofactor bio 43.2 1.3E+02 0.0044 26.3 9.4 47 131-177 31-80 (172)
118 3e61_A Putative transcriptiona 43.2 71 0.0024 29.2 8.2 87 107-205 6-94 (277)
119 3gv0_A Transcriptional regulat 43.2 63 0.0021 29.9 7.9 90 107-205 6-97 (288)
120 4ehd_A Caspase-3; caspase, apo 42.9 34 0.0012 32.9 5.9 110 105-219 39-171 (277)
121 1oi4_A Hypothetical protein YH 42.8 14 0.00046 33.2 2.9 67 107-178 21-98 (193)
122 3zyw_A Glutaredoxin-3; metal b 42.8 40 0.0014 27.2 5.6 61 109-176 15-80 (111)
123 3opy_A 6-phosphofructo-1-kinas 42.3 21 0.00071 40.3 4.7 57 156-218 294-366 (989)
124 3rot_A ABC sugar transporter, 41.8 54 0.0019 30.6 7.2 68 131-205 23-94 (297)
125 2qip_A Protein of unknown func 41.4 60 0.002 28.2 6.9 25 165-189 107-131 (165)
126 2f48_A Diphosphate--fructose-6 41.3 20 0.00067 38.1 4.2 102 110-218 105-211 (555)
127 2rjo_A Twin-arginine transloca 41.2 63 0.0022 30.7 7.7 90 107-205 3-96 (332)
128 3dfz_A SIRC, precorrin-2 dehyd 41.0 85 0.0029 29.0 8.1 71 109-188 31-113 (223)
129 2hsg_A Glucose-resistance amyl 40.9 1E+02 0.0034 29.2 9.1 89 107-205 58-147 (332)
130 3lwz_A 3-dehydroquinate dehydr 40.9 70 0.0024 27.9 6.9 63 109-173 7-80 (153)
131 4evq_A Putative ABC transporte 40.8 88 0.003 29.9 8.8 78 108-189 150-229 (375)
132 1qpz_A PURA, protein (purine n 40.6 1.5E+02 0.0051 28.1 10.4 88 107-203 56-144 (340)
133 3miz_A Putative transcriptiona 40.5 73 0.0025 29.7 7.9 71 107-178 11-82 (301)
134 4b4k_A N5-carboxyaminoimidazol 40.3 1E+02 0.0035 27.6 8.0 72 112-188 25-100 (181)
135 3uug_A Multiple sugar-binding 40.2 92 0.0031 29.3 8.7 88 109-205 3-92 (330)
136 2iz6_A Molybdenum cofactor car 40.0 42 0.0014 29.9 5.7 45 154-205 33-78 (176)
137 1f4p_A Flavodoxin; electron tr 39.9 25 0.00084 29.5 4.0 81 111-205 2-92 (147)
138 1tq8_A Hypothetical protein RV 39.5 1E+02 0.0035 26.1 8.1 68 131-205 84-158 (163)
139 2uyg_A 3-dehydroquinate dehydr 39.2 73 0.0025 27.6 6.7 43 130-172 30-72 (149)
140 3kip_A 3-dehydroquinase, type 39.0 1.1E+02 0.0037 27.0 7.9 68 108-175 13-92 (167)
141 1xmp_A PURE, phosphoribosylami 39.0 1.4E+02 0.0048 26.4 8.7 59 130-188 27-89 (170)
142 1byk_A Protein (trehalose oper 39.0 81 0.0028 28.4 7.8 67 109-177 2-69 (255)
143 3sr3_A Microcin immunity prote 39.0 24 0.00082 34.9 4.2 68 110-178 13-92 (336)
144 1o4v_A Phosphoribosylaminoimid 38.9 1.5E+02 0.0051 26.6 8.9 59 130-188 29-91 (183)
145 3clk_A Transcription regulator 38.9 65 0.0022 29.8 7.2 89 107-205 6-96 (290)
146 3trh_A Phosphoribosylaminoimid 38.1 1.6E+02 0.0054 26.1 8.9 73 111-188 8-84 (169)
147 1t35_A Hypothetical protein YV 37.9 35 0.0012 30.7 4.9 46 153-205 20-66 (191)
148 3rg8_A Phosphoribosylaminoimid 37.8 1.1E+02 0.0037 26.9 7.7 60 130-189 18-82 (159)
149 3opy_B 6-phosphofructo-1-kinas 37.7 22 0.00076 40.0 4.1 56 157-218 267-338 (941)
150 3kke_A LACI family transcripti 37.6 1.4E+02 0.0047 27.8 9.4 89 107-205 13-102 (303)
151 2h31_A Multifunctional protein 37.3 1.7E+02 0.0058 29.8 10.3 75 110-189 266-345 (425)
152 2q9u_A A-type flavoprotein; fl 37.2 1.2E+02 0.0042 29.9 9.4 73 108-186 255-333 (414)
153 3qua_A Putative uncharacterize 37.0 31 0.0011 31.5 4.3 46 153-205 40-86 (199)
154 4e5s_A MCCFLIKE protein (BA_56 36.9 44 0.0015 32.9 5.8 69 109-178 11-91 (331)
155 2a9v_A GMP synthase; structura 36.9 26 0.00089 31.9 3.9 58 108-181 12-70 (212)
156 1fy2_A Aspartyl dipeptidase; s 36.8 78 0.0027 29.1 7.2 69 108-188 30-99 (229)
157 2ab0_A YAJL; DJ-1/THIJ superfa 36.8 32 0.0011 31.0 4.4 65 109-178 2-78 (205)
158 1jye_A Lactose operon represso 36.6 1.9E+02 0.0064 27.6 10.4 66 108-175 60-127 (349)
159 3hly_A Flavodoxin-like domain; 36.6 53 0.0018 28.2 5.7 58 111-174 2-59 (161)
160 1u11_A PURE (N5-carboxyaminoim 36.5 1.7E+02 0.0059 26.1 9.0 73 111-188 23-99 (182)
161 1tjy_A Sugar transport protein 36.4 70 0.0024 30.3 7.1 87 110-205 4-93 (316)
162 3td9_A Branched chain amino ac 36.4 69 0.0023 30.7 7.1 79 108-189 148-227 (366)
163 3o8o_B 6-phosphofructokinase s 36.2 33 0.0011 37.8 5.1 57 157-218 89-160 (766)
164 3tla_A MCCF; serine protease, 36.1 30 0.001 34.8 4.4 69 109-178 42-122 (371)
165 1i1q_B Anthranilate synthase c 36.0 49 0.0017 29.3 5.5 61 111-181 2-62 (192)
166 1m72_A Caspase-1; caspase, cys 35.9 92 0.0031 29.6 7.7 108 106-218 28-157 (272)
167 2h3h_A Sugar ABC transporter, 35.5 98 0.0033 29.0 8.0 68 131-205 20-90 (313)
168 4eyg_A Twin-arginine transloca 35.5 89 0.003 29.8 7.8 78 108-189 138-217 (368)
169 1ydh_A AT5G11950; structural g 35.4 34 0.0012 31.6 4.3 45 154-205 29-74 (216)
170 1nw9_B Caspase 9, apoptosis-re 35.4 1.1E+02 0.0037 29.1 8.2 65 106-170 17-91 (277)
171 2j32_A Caspase-3; Pro-caspase3 35.0 1E+02 0.0034 28.9 7.8 108 107-219 13-143 (250)
172 3hcw_A Maltose operon transcri 35.0 49 0.0017 30.9 5.7 90 107-205 5-99 (295)
173 2cof_A Protein KIAA1914; PH do 34.9 34 0.0012 26.9 3.9 28 79-106 76-103 (107)
174 1wjm_A Beta-spectrin III; PH d 34.9 35 0.0012 27.6 4.0 27 80-106 93-119 (123)
175 3hbm_A UDP-sugar hydrolase; PS 34.6 1.1E+02 0.0036 29.3 8.0 28 166-205 225-252 (282)
176 3sir_A Caspase; hydrolase; 2.6 34.5 68 0.0023 30.3 6.5 109 106-219 16-146 (259)
177 3ksm_A ABC-type sugar transpor 34.2 79 0.0027 28.7 6.9 68 131-205 20-92 (276)
178 2hqb_A Transcriptional activat 34.0 57 0.0019 30.9 6.0 89 108-204 4-94 (296)
179 3eaf_A ABC transporter, substr 33.8 1.2E+02 0.004 29.5 8.5 78 109-189 141-222 (391)
180 2pju_A Propionate catabolism o 33.2 1.7E+02 0.0059 26.9 8.9 66 109-186 106-171 (225)
181 2c4w_A 3-dehydroquinate dehydr 32.9 74 0.0025 28.3 5.8 62 110-172 10-84 (176)
182 3op6_A Uncharacterized protein 32.9 34 0.0012 29.3 3.8 51 131-181 5-68 (152)
183 3bbl_A Regulatory protein of L 32.8 73 0.0025 29.5 6.5 67 131-205 28-95 (287)
184 1y5e_A Molybdenum cofactor bio 32.5 2.1E+02 0.0071 24.8 9.0 48 131-178 34-84 (169)
185 1wl8_A GMP synthase [glutamine 32.4 1.9E+02 0.0064 25.2 8.9 40 131-176 14-53 (189)
186 4e08_A DJ-1 beta; flavodoxin-l 32.4 48 0.0016 29.2 4.8 66 107-177 3-78 (190)
187 1gqo_A Dehydroquinase; dehydra 31.9 83 0.0028 27.1 5.8 43 130-173 31-73 (143)
188 1mjh_A Protein (ATP-binding do 31.8 66 0.0023 26.9 5.5 67 132-205 87-159 (162)
189 1usg_A Leucine-specific bindin 31.8 1.2E+02 0.0039 28.6 7.8 77 109-189 138-216 (346)
190 3d02_A Putative LACI-type tran 31.8 1.3E+02 0.0045 27.7 8.1 87 110-205 5-94 (303)
191 2dri_A D-ribose-binding protei 31.8 1.4E+02 0.0046 27.2 8.1 67 131-204 21-89 (271)
192 3u80_A 3-dehydroquinate dehydr 31.6 1.1E+02 0.0037 26.6 6.6 64 109-173 4-77 (151)
193 2fp3_A Caspase NC; apoptosis, 31.3 1.1E+02 0.0038 29.7 7.6 111 103-218 53-191 (316)
194 1pea_A Amidase operon; gene re 31.2 1.7E+02 0.0059 28.2 9.2 77 109-189 140-220 (385)
195 2p0d_A RHO GTPase-activating p 30.9 23 0.00078 29.5 2.2 27 80-106 100-126 (129)
196 3ipz_A Monothiol glutaredoxin- 30.9 1.2E+02 0.0041 24.1 6.6 65 109-176 17-82 (109)
197 2nn3_C Caspase-1; cysteine pro 30.8 1.1E+02 0.0039 29.6 7.5 108 106-218 56-185 (310)
198 1fmt_A Methionyl-tRNA FMet for 30.8 83 0.0028 30.6 6.6 69 109-180 27-95 (314)
199 1u5d_A SKAP55, SRC kinase-asso 30.7 35 0.0012 26.5 3.2 26 80-105 81-106 (108)
200 3hut_A Putative branched-chain 30.7 1.4E+02 0.0049 28.2 8.4 77 108-189 138-217 (358)
201 3n8k_A 3-dehydroquinate dehydr 30.7 88 0.003 27.7 5.9 62 110-173 29-101 (172)
202 3qmx_A Glutaredoxin A, glutare 30.5 1.6E+02 0.0055 22.8 7.2 42 109-157 15-56 (99)
203 4a26_A Putative C-1-tetrahydro 30.5 2.7E+02 0.0092 26.9 10.1 80 90-172 13-101 (300)
204 1rcu_A Conserved hypothetical 30.4 55 0.0019 29.7 4.8 46 153-205 45-90 (195)
205 2a33_A Hypothetical protein; s 30.3 46 0.0016 30.7 4.3 45 154-205 33-78 (215)
206 4dzz_A Plasmid partitioning pr 30.3 1.1E+02 0.0039 26.4 7.0 48 110-159 1-48 (206)
207 3m3p_A Glutamine amido transfe 30.2 52 0.0018 30.9 4.8 60 109-180 3-62 (250)
208 3hs3_A Ribose operon repressor 29.7 91 0.0031 28.7 6.5 66 107-174 8-75 (277)
209 3h11_A CAsp8 and FADD-like apo 29.7 2E+02 0.0067 27.3 8.9 93 106-205 39-151 (272)
210 3huu_A Transcription regulator 29.4 80 0.0027 29.5 6.1 67 131-205 47-114 (305)
211 1eaz_A Tandem PH domain contai 29.4 44 0.0015 26.8 3.7 27 80-106 87-113 (125)
212 4hjh_A Phosphomannomutase; str 29.4 1.5E+02 0.0052 30.5 8.7 81 90-177 157-249 (481)
213 3en0_A Cyanophycinase; serine 29.2 40 0.0014 32.6 3.9 63 110-178 57-122 (291)
214 3tqq_A Methionyl-tRNA formyltr 29.2 87 0.003 30.5 6.4 68 110-180 27-94 (314)
215 1e5d_A Rubredoxin\:oxygen oxid 29.1 2.2E+02 0.0074 27.8 9.6 60 109-174 252-311 (402)
216 1fgy_A GRP1; PH domain, signal 29.0 43 0.0015 26.9 3.6 27 80-106 96-122 (127)
217 2d9y_A Pleckstrin homology dom 29.0 40 0.0014 26.7 3.3 26 80-105 85-110 (117)
218 3pdk_A Phosphoglucosamine muta 28.7 85 0.0029 32.4 6.5 50 90-147 175-224 (469)
219 2rk3_A Protein DJ-1; parkinson 28.6 46 0.0016 29.5 4.0 65 109-178 3-78 (197)
220 1jmv_A USPA, universal stress 28.5 1.2E+02 0.0043 24.3 6.6 68 131-205 67-138 (141)
221 3uw2_A Phosphoglucomutase/phos 28.1 91 0.0031 32.3 6.7 77 92-177 178-267 (485)
222 3cxb_B Pleckstrin homology dom 28.1 40 0.0014 27.1 3.2 27 80-106 77-103 (112)
223 3jvd_A Transcriptional regulat 28.0 94 0.0032 29.6 6.5 67 107-175 62-128 (333)
224 1s3a_A NADH-ubiquinone oxidore 28.0 22 0.00077 28.6 1.6 43 110-152 20-62 (102)
225 1weh_A Conserved hypothetical 27.8 52 0.0018 29.0 4.1 47 152-205 19-65 (171)
226 1czn_A Flavodoxin; FMN binding 27.8 83 0.0028 26.8 5.5 85 110-205 1-88 (169)
227 3rht_A (gatase1)-like protein; 27.7 28 0.00095 33.2 2.4 55 108-173 3-57 (259)
228 2ywx_A Phosphoribosylaminoimid 27.6 2.6E+02 0.0089 24.3 8.4 58 130-189 15-75 (157)
229 1qdl_B Protein (anthranilate s 27.4 63 0.0022 28.7 4.7 57 112-181 4-60 (195)
230 1h05_A 3-dehydroquinate dehydr 27.3 88 0.003 27.0 5.2 43 130-173 33-75 (146)
231 2vvr_A Ribose-5-phosphate isom 27.2 1.5E+02 0.0052 25.6 6.9 52 113-169 4-61 (149)
232 3cwq_A Para family chromosome 27.1 91 0.0031 27.8 5.8 62 112-177 2-78 (209)
233 2ioy_A Periplasmic sugar-bindi 27.1 2E+02 0.0067 26.3 8.4 66 131-203 21-88 (283)
234 1v5u_A SBF1, SET binding facto 27.0 41 0.0014 26.6 3.0 26 80-105 87-112 (117)
235 1uqr_A 3-dehydroquinate dehydr 26.9 1.5E+02 0.0052 25.8 6.7 45 130-175 32-76 (154)
236 2qu7_A Putative transcriptiona 26.6 1.1E+02 0.0038 28.1 6.5 48 131-178 27-75 (288)
237 3rcp_A Pleckstrin homology dom 26.6 50 0.0017 25.6 3.4 27 80-106 69-95 (103)
238 3sg0_A Extracellular ligand-bi 26.5 1.3E+02 0.0046 28.6 7.3 78 108-189 158-237 (386)
239 1pls_A Pleckstrin homology dom 26.4 61 0.0021 25.5 4.0 26 80-105 77-102 (113)
240 1fao_A Dual adaptor of phospho 26.1 58 0.002 26.2 3.9 27 80-106 88-114 (126)
241 2klx_A Glutaredoxin; thioredox 26.1 1.6E+02 0.0056 21.8 6.4 55 109-171 5-60 (89)
242 2q5c_A NTRC family transcripti 26.0 1E+02 0.0035 27.6 5.9 65 110-186 95-159 (196)
243 3iwt_A 178AA long hypothetical 25.9 1.5E+02 0.0052 25.8 6.9 58 131-188 43-108 (178)
244 1n57_A Chaperone HSP31, protei 25.9 1.3E+02 0.0046 28.6 7.0 16 164-179 143-158 (291)
245 1v89_A Hypothetical protein KI 25.8 55 0.0019 25.7 3.7 27 79-105 87-113 (118)
246 2da0_A 130-kDa phosphatidylino 25.8 58 0.002 25.9 3.8 26 80-105 77-102 (114)
247 2i0f_A 6,7-dimethyl-8-ribityll 25.5 1.4E+02 0.0049 26.0 6.4 78 110-189 13-105 (157)
248 3o21_A Glutamate receptor 3; p 25.3 2.1E+02 0.0072 27.9 8.6 75 109-188 130-207 (389)
249 2rlo_A Centaurin-gamma 1; spli 25.2 46 0.0016 27.2 3.1 25 80-104 100-124 (128)
250 3gyb_A Transcriptional regulat 25.2 74 0.0025 29.1 5.0 85 107-205 3-87 (280)
251 2i5f_A Pleckstrin; PH domain, 25.0 48 0.0016 25.8 3.1 24 80-103 85-108 (109)
252 3q0i_A Methionyl-tRNA formyltr 24.9 76 0.0026 31.0 5.1 78 98-180 22-99 (318)
253 3ipc_A ABC transporter, substr 24.8 1.2E+02 0.0041 28.7 6.6 77 109-189 138-216 (356)
254 3rfq_A Pterin-4-alpha-carbinol 24.7 1.5E+02 0.0052 26.4 6.7 59 130-188 51-116 (185)
255 3g85_A Transcriptional regulat 24.6 77 0.0026 29.2 5.0 90 107-205 9-99 (289)
256 3rfo_A Methionyl-tRNA formyltr 24.6 86 0.003 30.6 5.4 69 109-180 28-96 (317)
257 3hcw_A Maltose operon transcri 24.6 2.3E+02 0.0078 26.1 8.4 78 109-189 131-214 (295)
258 2d9x_A Oxysterol binding prote 24.3 56 0.0019 26.2 3.5 25 80-104 80-104 (120)
259 4a5o_A Bifunctional protein fo 24.1 4.3E+02 0.015 25.3 10.1 79 90-172 12-99 (286)
260 1wgq_A FYVE, rhogef and PH dom 24.0 72 0.0025 24.9 4.0 26 79-104 78-103 (109)
261 2lul_A Tyrosine-protein kinase 23.9 61 0.0021 28.1 3.8 38 80-120 97-134 (164)
262 1di6_A MOGA, molybdenum cofact 23.9 2.5E+02 0.0085 25.1 8.0 58 131-188 26-93 (195)
263 2vzf_A NADH-dependent FMN redu 23.9 1.3E+02 0.0045 26.4 6.2 93 110-205 3-110 (197)
264 1r7h_A NRDH-redoxin; thioredox 23.8 1.9E+02 0.0065 20.2 6.1 35 111-152 2-36 (75)
265 3h5l_A Putative branched-chain 23.7 2.7E+02 0.0092 27.1 9.1 104 82-189 132-243 (419)
266 2dn6_A KIAA0640 protein; PH do 23.6 61 0.0021 25.5 3.5 26 80-105 79-104 (115)
267 1gud_A ALBP, D-allose-binding 23.5 2E+02 0.007 26.3 7.8 67 131-204 21-91 (288)
268 1v95_A Nuclear receptor coacti 23.2 94 0.0032 26.3 4.6 56 127-186 21-76 (130)
269 1t1v_A SH3BGRL3, SH3 domain-bi 23.1 2E+02 0.0068 21.7 6.4 50 110-160 2-51 (93)
270 3i3w_A Phosphoglucosamine muta 23.1 1.4E+02 0.0049 30.3 7.0 49 91-146 153-201 (443)
271 3lzd_A DPH2; diphthamide biosy 22.9 2.6E+02 0.009 27.9 8.6 68 101-175 256-323 (378)
272 3mt0_A Uncharacterized protein 22.8 3.4E+02 0.012 24.9 9.3 101 91-205 22-128 (290)
273 2yan_A Glutaredoxin-3; oxidore 22.8 2.2E+02 0.0075 22.0 6.7 35 110-151 17-56 (105)
274 1e2b_A Enzyme IIB-cellobiose; 22.7 94 0.0032 25.0 4.4 39 109-151 3-41 (106)
275 3cs3_A Sugar-binding transcrip 22.5 4.2E+02 0.014 23.8 10.8 78 109-189 118-199 (277)
276 2is8_A Molybdopterin biosynthe 22.4 1.3E+02 0.0045 25.9 5.7 57 131-187 24-88 (164)
277 1hyq_A MIND, cell division inh 22.4 2.6E+02 0.0089 25.3 8.2 38 111-150 3-40 (263)
278 3s5p_A Ribose 5-phosphate isom 22.3 1.6E+02 0.0056 25.9 6.1 51 113-168 24-80 (166)
279 2hna_A Protein MIOC, flavodoxi 22.3 79 0.0027 26.4 4.1 53 110-174 2-54 (147)
280 3d54_D Phosphoribosylformylgly 22.3 76 0.0026 28.3 4.2 52 109-178 2-53 (213)
281 3aj4_A Pleckstrin homology dom 22.2 62 0.0021 25.4 3.3 24 80-103 87-110 (112)
282 1obo_A Flavodoxin; electron tr 22.1 1.1E+02 0.0037 26.0 5.1 67 110-188 2-71 (169)
283 2cod_A Centaurin-delta 1; ARF 22.0 60 0.0021 25.7 3.1 26 80-105 75-100 (115)
284 1tuo_A Putative phosphomannomu 21.8 1.2E+02 0.0041 31.0 6.1 81 91-177 156-252 (464)
285 2khp_A Glutaredoxin; thioredox 21.8 2.5E+02 0.0084 20.8 7.3 48 109-163 5-53 (92)
286 3g23_A Peptidase U61, LD-carbo 21.7 1.4E+02 0.0048 28.4 6.1 72 111-186 4-88 (274)
287 2pjk_A 178AA long hypothetical 21.6 1.9E+02 0.0067 25.3 6.7 58 131-188 43-108 (178)
288 3pp2_A RHO GTPase-activating p 21.6 65 0.0022 26.4 3.3 25 80-104 99-123 (124)
289 1gtz_A 3-dehydroquinate dehydr 21.4 1.6E+02 0.0056 25.6 5.8 65 111-177 8-83 (156)
290 2q5c_A NTRC family transcripti 21.2 1.4E+02 0.0048 26.7 5.8 61 131-205 18-78 (196)
291 3lop_A Substrate binding perip 21.1 1.7E+02 0.0058 27.9 6.8 77 109-189 141-219 (364)
292 3ctp_A Periplasmic binding pro 21.1 2.3E+02 0.0077 26.7 7.7 69 107-178 58-127 (330)
293 2rsg_A Collagen type IV alpha- 21.0 35 0.0012 26.1 1.4 23 80-102 70-92 (94)
294 3l07_A Bifunctional protein fo 21.0 4.6E+02 0.016 25.0 9.6 98 90-191 11-120 (285)
295 2dhk_A TBC1 domain family memb 20.9 65 0.0022 25.9 3.1 26 79-104 79-104 (119)
296 1byk_A Protein (trehalose oper 20.9 1.1E+02 0.0039 27.4 5.2 79 109-189 115-194 (255)
297 1unq_A RAC-alpha serine/threon 20.8 88 0.003 25.1 4.0 26 79-104 85-110 (125)
298 2y7b_A Actin-binding protein a 20.8 87 0.003 25.4 4.0 27 79-105 103-129 (134)
299 3pzy_A MOG; ssgcid, seattle st 20.7 1.9E+02 0.0064 25.1 6.4 58 131-189 30-94 (164)
300 2z08_A Universal stress protei 20.6 97 0.0033 25.0 4.3 58 140-204 73-137 (137)
301 4a6h_A Phosphatidylinositol 4, 20.6 69 0.0024 26.3 3.3 24 80-103 94-117 (120)
302 2dum_A Hypothetical protein PH 20.5 1.3E+02 0.0046 25.1 5.4 67 132-205 82-156 (170)
303 2nv0_A Glutamine amidotransfer 20.4 1.2E+02 0.0041 26.7 5.1 52 110-181 2-53 (196)
304 3i45_A Twin-arginine transloca 20.4 2.4E+02 0.0081 27.1 7.8 78 108-189 141-222 (387)
305 1x05_A Pleckstrin; PH domain, 20.3 63 0.0022 26.1 3.0 27 80-106 96-122 (129)
306 2ywj_A Glutamine amidotransfer 20.1 1.3E+02 0.0045 26.1 5.3 50 111-180 2-51 (186)
307 3kht_A Response regulator; PSI 20.1 2.1E+02 0.0073 22.7 6.4 71 129-205 17-89 (144)
308 3cs3_A Sugar-binding transcrip 20.0 1.7E+02 0.0059 26.6 6.4 82 107-204 6-87 (277)
309 1dro_A Beta-spectrin; cytoskel 20.0 67 0.0023 25.9 3.1 25 80-104 95-119 (122)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=100.00 E-value=3e-50 Score=405.44 Aligned_cols=291 Identities=23% Similarity=0.311 Sum_probs=231.2
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.+++|++||+||.||++++.+.| +++++.|+.++++++++.|++++||.++++++. +++|.||++|||||+|||+|+|
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~-~~~d~vv~~GGDGTl~~v~~~l 83 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNL-TKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA-SKVDLIIVFGGDGTVFECTNGL 83 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHH-HHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHT-TTCSEEEEEECHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCCCchHHHH-HHHHHHHHHcCCeEEEEEccCcchHHHHHHHhh-cCCCEEEEEccchHHHHHHHHH
Confidence 35789999999999999998888 589999999999999999999999999999986 4899999999999999999999
Q ss_pred hcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCeeeeeEEEEEeCCeeEEEEEeeeee
Q 011290 187 LEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWG 266 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~lDl~~v~~~~~~~fs~~~~~~G 266 (489)
+.+. .++|||+||+ ||+|+||++| |+|.++..|+..|++|+.+++|++.+++ ++|.+ ++++|
T Consensus 84 ~~~~-----~~~~l~iiP~-----Gt~N~~ar~l----g~~~~~~~a~~~i~~g~~~~iDlg~v~~---~~F~~-~~~~G 145 (304)
T 3s40_A 84 APLE-----IRPTLAIIPG-----GTCNDFSRTL----GVPQNIAEAAKLITKEHVKPVDVAKANG---QHFLN-FWGIG 145 (304)
T ss_dssp TTCS-----SCCEEEEEEC-----SSCCHHHHHT----TCCSSHHHHHHHHTTCCEEEEEEEEETT---EEESS-EEEEC
T ss_pred hhCC-----CCCcEEEecC-----CcHHHHHHHc----CCCccHHHHHHHHHhCCeEEEEEEEECC---EEEEE-EEeeh
Confidence 9853 3799999999 9999999999 8998999999999999999999999963 66654 79999
Q ss_pred eeecccccc--ccccccCchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCccccccccc
Q 011290 267 LVADIDIES--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGY 344 (489)
Q Consensus 267 ~~adv~~~s--e~~R~mG~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (489)
|+|++..+. +.+|++|+++|.+++++.+++.+.|+.+|.+
T Consensus 146 ~da~v~~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~-------------------------------------- 187 (304)
T 3s40_A 146 LVSEVSNNIDAEEKAKLGKIGYYLSTIRTVKNAETFPVKITY-------------------------------------- 187 (304)
T ss_dssp ------------------CHHHHTTTC------CCEEEEEEE--------------------------------------
T ss_pred HHHHHHHhcCHHHhhcCCchHHHHHHHHHHhhcCCceEEEEE--------------------------------------
Confidence 999998864 4567899999999999999888878777642
Q ss_pred CCCcccCCCCceEEEeecEEEEEEeeccCCCCCCCcCCCCccCCCeEEEEEEecCChHHHHHHHHhhccCCcccCCcEEE
Q 011290 345 QGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAY 424 (489)
Q Consensus 345 ~g~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~aP~A~~~DG~ldlilv~~~s~~~ll~~l~~~~~G~~~~~~~V~~ 424 (489)
+| +.+++++.++.++|.+++|+++.++|+|.++||.||++++++.++..+..++..+..|. ...+.|++
T Consensus 188 dg----------~~~~~~~~~v~v~N~~~~Ggg~~~~p~a~~~DG~Ldv~~v~~~~~~~l~~l~~~~~~g~-~~~~~v~~ 256 (304)
T 3s40_A 188 DG----------QVYEDEAVLVMVGNGEYLGGIPSFIPNVKCDDGTLDIFVVKSTGIQAFKDYIGKKLFED-SNENDIFH 256 (304)
T ss_dssp TT----------EEEEEEEEEEEEECSSEETTEECSSTTCCTTSSCEEEEEEETTCHHHHHHHTTCCCSSC-CCTTTEEE
T ss_pred CC----------EEEEeEEEEEEEECCCcCCCCcccCCCCcCCCCEEEEEEEccCCHHHHHHHHHHHhcCC-CCCCcEEE
Confidence 11 23567788999999999999999999999999999999999999876666655555565 77899999
Q ss_pred EEEeEEEEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCccccccEEEEEecCccccccC
Q 011290 425 LKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDKLQITVDQGLATLFSP 488 (489)
Q Consensus 425 ~kvk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~~~~p~q~~v~~~l~~~~~~ 488 (489)
+++++++|++. ++.++++|||++. ..|++++|+|+..++++|
T Consensus 257 ~~~~~v~i~~~-------~~~~~~~DGE~~~---------------~~p~~i~v~p~al~v~~p 298 (304)
T 3s40_A 257 VKAKSIHIETE-------EEKEVDTDGESSL---------------HTPCQIELLQGHFTMIYN 298 (304)
T ss_dssp EEESEEEEEES-------SCCEEEEC--CCE---------------ESSEEEEEEEEEEEEECC
T ss_pred EEccEEEEEeC-------CCcEEEeCCCCCC---------------CceEEEEEECCeEEEEec
Confidence 99999999986 3578999999974 346667777777777666
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=100.00 E-value=3.6e-46 Score=380.83 Aligned_cols=291 Identities=25% Similarity=0.344 Sum_probs=246.0
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
+++++||+||.||++++.+.| +++++.|+.+++++++..|++++|+.++++++...++|.||++|||||++||+|+|+.
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~-~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l~~ 102 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKREL-PDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAE 102 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHH-HHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHHTT
T ss_pred cceEEEEECCCCCCCchHHHH-HHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHHHHHHHHh
Confidence 568999999999999988877 6899999999999999999999999999988877789999999999999999999976
Q ss_pred CcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCeeeeeEEEEEeCCeeEEEEEeeeeeee
Q 011290 189 REDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLV 268 (489)
Q Consensus 189 ~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~lDl~~v~~~~~~~fs~~~~~~G~~ 268 (489)
.. .++|||+||+ ||+|+||++| |++.++..|+..|++|+.+++|++.++ .++|. +++++||+
T Consensus 103 ~~-----~~~pl~iIP~-----GT~N~lAr~L----g~~~~~~~al~~i~~g~~~~iD~g~v~---~r~fl-~~~~~G~~ 164 (337)
T 2qv7_A 103 KP-----NRPKLGVIPM-----GTVNDFGRAL----HIPNDIMGALDVIIEGHSTKVDIGKMN---NRYFI-NLAAGGQL 164 (337)
T ss_dssp CS-----SCCEEEEEEC-----SSCCHHHHHT----TCCSSHHHHHHHHHHTCEEEEEEEEET---TEEES-SEEEEECB
T ss_pred CC-----CCCcEEEecC-----CcHhHHHHHc----CCCCCHHHHHHHHHcCCcEEEEEEEEC---CEEEE-EEeeeccc
Confidence 43 3799999999 9999999999 888899999999999999999999996 36564 47999999
Q ss_pred eccccccc--cccccCchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCC
Q 011290 269 ADIDIESE--KYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQG 346 (489)
Q Consensus 269 adv~~~se--~~R~mG~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 346 (489)
|++..+.+ .++++|+++|.+++++.+.+.+.|+.+|++ +|
T Consensus 165 a~v~~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~--------------------------------------dg 206 (337)
T 2qv7_A 165 TQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEY--------------------------------------DG 206 (337)
T ss_dssp CC-------------CGGGSCCCTTTTGGGBCCEEEEEEE--------------------------------------TT
T ss_pred HHHHHHhhHHHHhccChHHHHHHHHHHHHhCCCccEEEEE--------------------------------------CC
Confidence 99987643 456789999999999988888877777642 11
Q ss_pred CcccCCCCceEEEeecEEEEEEeeccCCCCCCCcCCCCccCCCeEEEEEEecCChHHHHHHHHhhccCCcccCCcEEEEE
Q 011290 347 PDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLK 426 (489)
Q Consensus 347 ~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~aP~A~~~DG~ldlilv~~~s~~~ll~~l~~~~~G~~~~~~~V~~~k 426 (489)
+.+++++.++.++|.+++|+++.++|+|.++||.||++++++.+++++++++..+..|+|.+.+.|++++
T Consensus 207 ----------~~~~~~~~~v~v~n~~~~gGg~~i~P~a~~~DG~ldv~~v~~~~~~~l~~~~~~v~~g~~~~~~~v~~~~ 276 (337)
T 2qv7_A 207 ----------NVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEK 276 (337)
T ss_dssp ----------EEEEEEEEEEEEESSCCCSSCSCSSTTCCSSSSCEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEE
T ss_pred ----------EEEEeeEEEEEEECCCCCCCCCccCCCCcCCCCeEEEEEEccCCHHHHHHHHHHHhcCCccCCCCEEEEE
Confidence 1245778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEEEEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCccccccEEEEEecCccccccC
Q 011290 427 VKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDKLQITVDQGLATLFSP 488 (489)
Q Consensus 427 vk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~~~~p~q~~v~~~l~~~~~~ 488 (489)
+++++|++. ++..+++|||.... .|++++++|+..+++.|
T Consensus 277 ~~~i~i~~~-------~~~~~~iDGE~~~~---------------~~i~i~v~p~~l~v~~p 316 (337)
T 2qv7_A 277 AKAINISSF-------TDLQLNVDGEYGGK---------------LPANFLNLERHIDVFAP 316 (337)
T ss_dssp ESEEEEECS-------SCCEEEETTEEEEE---------------SCEEEEEEEEEEEEECC
T ss_pred eeEEEEEEC-------CCCeEEECCCcCCC---------------CcEEEEEEcCeEEEEec
Confidence 999999964 35789999998743 45666666666666665
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=100.00 E-value=1.3e-44 Score=368.49 Aligned_cols=288 Identities=20% Similarity=0.216 Sum_probs=234.1
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~ 187 (489)
+++|++||+||.||++ +.| +++.+.|+++++++.+..|++++|+.++++++...++|.||++|||||++||+|+|+
T Consensus 28 ~~~~~~vi~Np~sg~~---~~~-~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~ 103 (332)
T 2bon_A 28 EFPASLLILNGKSTDN---LPL-REAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALI 103 (332)
T ss_dssp --CCEEEEECSSSTTC---HHH-HHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHH
T ss_pred hcceEEEEECCCCCCC---chH-HHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHh
Confidence 4678999999999987 356 579999999999999999999999999988876668999999999999999999999
Q ss_pred cCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCeeeeeEEEEEeCCeeEEEEEeeeeee
Q 011290 188 EREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGL 267 (489)
Q Consensus 188 ~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~lDl~~v~~~~~~~fs~~~~~~G~ 267 (489)
.+++ ..++|||+||+ ||+|+||+++ |++.++..|+..|++|+.+++|++.+++ .++|. +++++||
T Consensus 104 ~~~~---~~~~plgiiP~-----Gt~N~fa~~l----~i~~~~~~al~~i~~g~~~~iDlg~v~~--r~~fl-~~~~~G~ 168 (332)
T 2bon_A 104 QCEG---DDIPALGILPL-----GTANDFATSV----GIPEALDKALKLAIAGDAIAIDMAQVNK--QTCFI-NMATGGF 168 (332)
T ss_dssp HCCS---SCCCEEEEEEC-----SSSCHHHHHT----TCCSSHHHHHHHHHHSEEEEEEEEEETT--SCEES-SEEEEEE
T ss_pred hccc---CCCCeEEEecC-----cCHHHHHHhc----CCCCCHHHHHHHHHcCCeEEeeEEEECC--ceEEE-EEEeECc
Confidence 6531 23789999999 9999999999 8888999999999999999999999963 22564 4799999
Q ss_pred eeccccc--cccccccCchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccC
Q 011290 268 VADIDIE--SEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQ 345 (489)
Q Consensus 268 ~adv~~~--se~~R~mG~~ry~~~~l~~l~~~r~y~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (489)
+|++..+ .+.++++|+++|.+.+++++.+.+.|+.+|++ +
T Consensus 169 da~v~~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~--------------------------------------d 210 (332)
T 2bon_A 169 GTRITTETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEIRG--------------------------------------E 210 (332)
T ss_dssp EEEC----------CCHHHHHHHHHTSCEEEEECEEEEEEE--------------------------------------T
T ss_pred cHHHHHHhhHHhHhcccHHHHHHHHHHHHhhCCCeeEEEEE--------------------------------------C
Confidence 9999865 44567899999999988777766666666532 1
Q ss_pred CCcccCCCCceEEEeecEEEEEEeeccCCCCCCCcCCCCccCCCeEEEEEEecCChHHHHHHHHhhccCCcccCCcEEEE
Q 011290 346 GPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYL 425 (489)
Q Consensus 346 g~~~~~~~~~w~~i~g~f~~v~v~N~~~~g~~~~~aP~A~~~DG~ldlilv~~~s~~~ll~~l~~~~~G~~~~~~~V~~~ 425 (489)
| +.+++++.++.++|.+|+|+++.++|+|.++||.||++++++. ++ +++++..+..| |.+ +.|.++
T Consensus 211 g----------~~~~~~~~~v~v~N~~~~ggg~~i~P~a~~~DG~Ldv~iv~~~-~~-~l~~~~~~~~g-~~~-~~v~~~ 276 (332)
T 2bon_A 211 N----------FHWQGDALVIGIGNGRQAGGGQQLCPNALINDGLLQLRIFTGD-EI-LPALVSTLKSD-EDN-PNIIEG 276 (332)
T ss_dssp T----------EEEEEEESEEEEESSSCBTTTBCSCTTCCTTSSCEEEEEECCS-SC-CHHHHHHHHTT-CCC-TTEEEE
T ss_pred C----------EEEEEEEEEEEEECCCccCCCcccCCCCCCCCCeEEEEEECCH-HH-HHHHHHHHHcC-CCC-CcEEEE
Confidence 1 1235677788899999999999999999999999999999988 77 88888888889 876 999999
Q ss_pred EEeEEEEEeCCCCCCCCCCceEEecCCccccCCceeEecCCCccccccEEEEEecCccccccC
Q 011290 426 KVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDKLQITVDQGLATLFSP 488 (489)
Q Consensus 426 kvk~~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~L~~~~p~q~~v~~~l~~~~~~ 488 (489)
++++++|++. ++..+++|||.+... |++++++|+..+|+.|
T Consensus 277 ~~~~i~I~~~-------~~~~~~iDGE~~~~~---------------~~~i~v~p~al~vl~p 317 (332)
T 2bon_A 277 ASSWFDIQAP-------HDITFNLDGEPLSGQ---------------NFHIEILPAALRCRLP 317 (332)
T ss_dssp EESEEEEEEE-------EEEEEEETTEEEEEE---------------EEEEEEEEEEEEEEEC
T ss_pred EeeEEEEEEC-------CCCeEEecCCCCCCc---------------eEEEEEECCeeEEEeC
Confidence 9999999974 357899999987533 5566666666666555
No 4
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=99.52 E-value=7.5e-15 Score=146.23 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=77.0
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHH----HHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA----KEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha----~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
+|++++|+||.++ ++.+.+ +++...|+++|+++.+..|...... .....+....++|.||++|||||++++++
T Consensus 5 mkki~ii~np~~~--~~~~~~-~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDGT~l~a~~ 81 (292)
T 2an1_A 5 FKCIGIVGHPRHP--TALTTH-EMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAAR 81 (292)
T ss_dssp CCEEEEECC---------CHH-HHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHHHHHH
T ss_pred CcEEEEEEcCCCH--HHHHHH-HHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCcHHHHHHHH
Confidence 5899999999864 344444 6889999999998877655322100 00001111235899999999999999999
Q ss_pred HhhcCcCccccCCCc-EEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCee
Q 011290 185 GLLEREDWNDAIKVP-LGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 243 (489)
Q Consensus 185 GL~~~~~~~~~~~~p-lgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~ 243 (489)
++... .+| ||| |+ ||.|.++. + + +.++..|+..|+.|+.+
T Consensus 82 ~~~~~-------~~P~lGI-~~-----Gt~gfla~-~----~-~~~~~~al~~i~~g~~~ 122 (292)
T 2an1_A 82 TLARY-------DINVIGI-NR-----GNLGFLTD-L----D-PDNALQQLSDVLEGRYI 122 (292)
T ss_dssp HHTTS-------SCEEEEB-CS-----SSCCSSCC-B----C-TTSHHHHHHHHHTTCEE
T ss_pred HhhcC-------CCCEEEE-EC-----CCcccCCc-C----C-HHHHHHHHHHHHcCCCE
Confidence 99875 355 666 89 99666664 4 5 67899999999999873
No 5
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=99.38 E-value=1.4e-12 Score=127.54 Aligned_cols=99 Identities=16% Similarity=0.120 Sum_probs=71.1
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcC
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
+++++|+||.+|++ +.+.. +++...|+ +++ +. +. | +....++|.||++|||||++++++++..
T Consensus 1 mki~ii~Np~~~~~-~~~~~-~~i~~~l~--~~~--~~-~~---~------~~~~~~~D~vv~~GGDGTll~~a~~~~~- 63 (258)
T 1yt5_A 1 MKIAILYREEREKE-GEFLK-EKISKEHE--VIE--FG-EA---N------APGRVTADLIVVVGGDGTVLKAAKKAAD- 63 (258)
T ss_dssp CEEEEEECGGGHHH-HHHHH-HHHTTTSE--EEE--EE-ES---S------SCSCBCCSEEEEEECHHHHHHHHTTBCT-
T ss_pred CEEEEEEeCCCchH-HHHHH-HHHHHHhc--CCc--ee-cc---c------ccccCCCCEEEEEeCcHHHHHHHHHhCC-
Confidence 36999999999987 65543 45555555 333 22 21 2 2223478999999999999999999876
Q ss_pred cCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCee
Q 011290 190 EDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 243 (489)
Q Consensus 190 ~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~ 243 (489)
. .+.+|| +. ||.+-++ .+ . +.++.+|+..++.|+.+
T Consensus 64 ~------~PilGI-n~-----G~~Gfl~-~~----~-~~~~~~al~~i~~g~~~ 99 (258)
T 1yt5_A 64 G------TPMVGF-KA-----GRLGFLT-SY----T-LDEIDRFLEDLRNWNFR 99 (258)
T ss_dssp T------CEEEEE-ES-----SSCCSSC-CB----C-GGGHHHHHHHHHTTCCE
T ss_pred C------CCEEEE-EC-----CCCCccC-cC----C-HHHHHHHHHHHHcCCce
Confidence 2 334777 49 9995555 55 4 67899999999999874
No 6
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=99.32 E-value=2.5e-12 Score=129.06 Aligned_cols=114 Identities=15% Similarity=0.184 Sum_probs=78.0
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhH----------------HHHHHHH-hhcCCCceEE
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH----------------AKEIVKV-LDLSKYDGIV 171 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~h----------------a~el~~~-~~~~~~d~IV 171 (489)
++++++|+||.++. +.+.+ +++...|+++|+++.+..++.... +..+.+. ....++|.||
T Consensus 4 m~ki~iI~n~~~~~--~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi 80 (307)
T 1u0t_A 4 HRSVLLVVHTGRDE--ATETA-RRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVL 80 (307)
T ss_dssp -CEEEEEESSSGGG--GSHHH-HHHHHHHHTTTCEEEEEC-----------------------------------CCCEE
T ss_pred CCEEEEEEeCCCHH--HHHHH-HHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEE
Confidence 68899999998854 44444 689999999999988776664321 2222111 2335789999
Q ss_pred EEcCCChHHHHHHHhhcCcCccccCCCc-EEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCeee
Q 011290 172 CVSGDGILVEVVNGLLEREDWNDAIKVP-LGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRL 244 (489)
Q Consensus 172 ~vGGDGtl~EVvnGL~~~~~~~~~~~~p-lgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~~ 244 (489)
++|||||++++++++... .+| +| |+. ||.|.++. + . +.++..++..|+.|+.+.
T Consensus 81 ~~GGDGT~l~a~~~~~~~-------~~pvlg-i~~-----G~~gfl~~-~----~-~~~~~~~~~~i~~g~~~~ 135 (307)
T 1u0t_A 81 VLGGDGTFLRAAELARNA-------SIPVLG-VNL-----GRIGFLAE-A----E-AEAIDAVLEHVVAQDYRV 135 (307)
T ss_dssp EEECHHHHHHHHHHHHHH-------TCCEEE-EEC-----SSCCSSCS-E----E-GGGHHHHHHHHHHTCCEE
T ss_pred EEeCCHHHHHHHHHhccC-------CCCEEE-EeC-----CCCccCcc-c----C-HHHHHHHHHHHHcCCcEE
Confidence 999999999999999764 456 66 589 99988874 4 2 557889999999998654
No 7
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=99.21 E-value=1.9e-11 Score=120.56 Aligned_cols=95 Identities=13% Similarity=0.250 Sum_probs=74.2
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcC
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
+++.+|+||. .++.+.. +++...|+++|++++ ..++|.||++|||||+.++++.+...
T Consensus 1 mki~ii~n~~---~~~~~~~-~~l~~~l~~~g~~v~------------------~~~~D~vv~lGGDGT~l~aa~~~~~~ 58 (272)
T 2i2c_A 1 MKYMITSKGD---EKSDLLR-LNMIAGFGEYDMEYD------------------DVEPEIVISIGGDGTFLSAFHQYEER 58 (272)
T ss_dssp CEEEEEECCS---HHHHHHH-HHHHHHHTTSSCEEC------------------SSSCSEEEEEESHHHHHHHHHHTGGG
T ss_pred CEEEEEECCC---HHHHHHH-HHHHHHHHHCCCEeC------------------CCCCCEEEEEcCcHHHHHHHHHHhhc
Confidence 4789999973 3455544 678899999998761 24789999999999999999999763
Q ss_pred cCccccCCCc-EEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCee
Q 011290 190 EDWNDAIKVP-LGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 243 (489)
Q Consensus 190 ~~~~~~~~~p-lgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~ 243 (489)
. ..+| ||| |. || |+|...+ . +.++..++..|+.|+.+
T Consensus 59 ~-----~~~PilGI-n~-----G~-lgfl~~~----~-~~~~~~~l~~l~~g~~~ 96 (272)
T 2i2c_A 59 L-----DEIAFIGI-HT-----GH-LGFYADW----R-PAEADKLVKLLAKGEYQ 96 (272)
T ss_dssp T-----TTCEEEEE-ES-----SS-CCSSCCB----C-GGGHHHHHHHHHTTCCE
T ss_pred C-----CCCCEEEE-eC-----CC-CCcCCcC----C-HHHHHHHHHHHHcCCCE
Confidence 1 1567 666 99 99 6677776 4 66889999999999865
No 8
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=97.96 E-value=6.2e-06 Score=84.77 Aligned_cols=114 Identities=17% Similarity=0.209 Sum_probs=76.1
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHh---------------------hcC
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL---------------------DLS 165 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~---------------------~~~ 165 (489)
..+++++||.||.. ..+.+.. +++...|...+..++++..+...+ ++...+ ...
T Consensus 39 ~~~k~V~II~n~~~--~~~~~~~-~~l~~~L~~~~~gi~V~ve~~~a~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (388)
T 3afo_A 39 NPLQNVYITKKPWT--PSTREAM-VEFITHLHESYPEVNVIVQPDVAE--EISQDFKSPLENDPNRPHILYTGPEQDIVN 113 (388)
T ss_dssp SCCCEEEEEECTTC--HHHHHHH-HHHHHHHHHHCTTCEEECCHHHHH--HHHTTCCSCGGGCTTSCEEEEECCHHHHHH
T ss_pred CCCcEEEEEEeCCC--HHHHHHH-HHHHHHHHHhCCCeEEEEeCchhh--hhhhhccccccccccccccccccchhhccc
Confidence 45789999999974 4455544 578888888833344554333222 221110 113
Q ss_pred CCceEEEEcCCChHHHHHHHhhcCcCccccCCC-cEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCee
Q 011290 166 KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKV-PLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 243 (489)
Q Consensus 166 ~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~-plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~ 243 (489)
++|.||++|||||+..+++.+... .+ |+-=|+. |+-+-|+ .+ . +.+...++..++.|+..
T Consensus 114 ~~DlVIvlGGDGTlL~aa~~~~~~-------~vpPiLGIN~-----G~lGFLt-~~----~-~~~~~~al~~il~g~~~ 174 (388)
T 3afo_A 114 RTDLLVTLGGDGTILHGVSMFGNT-------QVPPVLAFAL-----GTLGFLS-PF----D-FKEHKKVFQEVISSRAK 174 (388)
T ss_dssp HCSEEEEEESHHHHHHHHHTTTTS-------CCCCEEEEEC-----SSCCSSC-CE----E-GGGHHHHHHHHHTTCCE
T ss_pred CCCEEEEEeCcHHHHHHHHHhccc-------CCCeEEEEEC-----CCcccCC-cC----C-hHHHHHHHHHHhcCCce
Confidence 579999999999999999988764 34 4444489 9885554 34 2 35788899999999764
No 9
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=96.68 E-value=0.0043 Score=60.69 Aligned_cols=94 Identities=16% Similarity=0.248 Sum_probs=65.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
.+++.++.||..- .+++...|+++|+++.+..... . . ..+.|.||++|||||+-.++..+..
T Consensus 29 ~mki~iv~~~~~~--------~~~l~~~L~~~g~~v~~~~~~~-~-------~--~~~~DlvIvlGGDGT~L~aa~~~~~ 90 (278)
T 1z0s_A 29 GMRAAVVYKTDGH--------VKRIEEALKRLEVEVELFNQPS-E-------E--LENFDFIVSVGGDGTILRILQKLKR 90 (278)
T ss_dssp -CEEEEEESSSTT--------HHHHHHHHHHTTCEEEEESSCC-G-------G--GGGSSEEEEEECHHHHHHHHTTCSS
T ss_pred ceEEEEEeCCcHH--------HHHHHHHHHHCCCEEEEccccc-c-------c--cCCCCEEEEECCCHHHHHHHHHhCC
Confidence 4569999998653 3578889999999775542211 1 1 2368999999999999888875533
Q ss_pred CcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHc
Q 011290 189 REDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIR 239 (489)
Q Consensus 189 ~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~ 239 (489)
. +|+-=|.. |+-+-|+. + .+.+..+++..+++
T Consensus 91 -------~-~PilGIN~-----G~lGFLt~-~-----~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 91 -------C-PPIFGINT-----GRVGLLTH-A-----SPENFEVELKKAVE 122 (278)
T ss_dssp -------C-CCEEEEEC-----SSSCTTCC-B-----BTTBCHHHHHHHHH
T ss_pred -------C-CcEEEECC-----CCCccccc-c-----CHHHHHHHHHHHHh
Confidence 2 78777888 87666653 3 13466777777775
No 10
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=95.56 E-value=0.06 Score=54.57 Aligned_cols=118 Identities=18% Similarity=0.226 Sum_probs=71.9
Q ss_pred hhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHH---------H-------hh--c
Q 011290 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK---------V-------LD--L 164 (489)
Q Consensus 103 ~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~---------~-------~~--~ 164 (489)
+.+...||+++||--|..- .+.... +++...|...|+++-+.. .-.+...+.. . .+ .
T Consensus 32 l~w~~~~k~I~iv~K~~~~--~~~~~~-~~l~~~L~~~~~~V~ve~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (365)
T 3pfn_A 32 LTWNKSPKSVLVIKKMRDA--SLLQPF-KELCTHLMEENMIVYVEK--KVLEDPAIASDESFGAVKKKFCTFREDYDDIS 106 (365)
T ss_dssp EEESSCCCEEEEEECTTCG--GGHHHH-HHHHHHHHHTSCEEEEEH--HHHHSHHHHHCSTTHHHHHHCEEECTTTCCCT
T ss_pred cccCCCCCEEEEEecCCCH--HHHHHH-HHHHHHHHHCCCEEEEeh--HHhhhhccccccccccccccccccccChhhcc
Confidence 3344578999999887542 334444 577888888887553331 1111111111 0 00 1
Q ss_pred CCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceeccccccCCCCcHHHHHHHHHcCCee
Q 011290 165 SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 243 (489)
Q Consensus 165 ~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl~~~~g~~~~~~~A~~~Ii~G~~~ 243 (489)
...|.||++|||||+-.++.-+... .+|+-=|-. |+---|+ .+ .+.+..+++..++.|+..
T Consensus 107 ~~~DlvI~lGGDGT~L~aa~~~~~~-------~~PvlGiN~-----G~LGFLt-~~-----~~~~~~~~l~~vl~g~~~ 167 (365)
T 3pfn_A 107 NQIDFIICLGGDGTLLYASSLFQGS-------VPPVMAFHL-----GSLGFLT-PF-----SFENFQSQVTQVIEGNAA 167 (365)
T ss_dssp TTCSEEEEESSTTHHHHHHHHCSSS-------CCCEEEEES-----SSCTTTC-CE-----ESTTHHHHHHHHHHSCCB
T ss_pred cCCCEEEEEcChHHHHHHHHHhccC-------CCCEEEEcC-----CCCccce-ee-----cHHHHHHHHHHHHcCCCe
Confidence 4689999999999999998866543 567655555 6432222 22 234778899999999754
No 11
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=95.08 E-value=0.12 Score=52.52 Aligned_cols=109 Identities=24% Similarity=0.361 Sum_probs=69.3
Q ss_pred HHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE-eC---ChhHHHHHHHHhhcCCCceEEEEc
Q 011290 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT---QQLHAKEIVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 99 l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~-T~---~~~ha~el~~~~~~~~~d~IV~vG 174 (489)
|.+.+...+ +|++|+..+.+-+..+ +.+++...|+.+|+++.++. .+ ......++++.+...+.|.||.+|
T Consensus 32 l~~~l~~~g--~~~liVtd~~~~~~~g---~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 106 (371)
T 1o2d_A 32 RGNIIDLLG--KRALVVTGKSSSKKNG---SLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLG 106 (371)
T ss_dssp HGGGGGGTC--SEEEEEEESSGGGTSS---HHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred HHHHHHHcC--CEEEEEECchHHhhcc---HHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 444454443 7999999885533211 34689999999999876653 11 344556666666656899999999
Q ss_pred CCChHHHHHHHhhcC---cC---cc------ccCCCcEEEecCcCCCCcccccc
Q 011290 175 GDGILVEVVNGLLER---ED---WN------DAIKVPLGVVPADFLDAGTGNGM 216 (489)
Q Consensus 175 GDGtl~EVvnGL~~~---~~---~~------~~~~~plgiIP~~~~~~GSgN~~ 216 (489)
| |.+.++.-.+... ++ |+ ....+|+..||. ++|||--+
T Consensus 107 G-Gsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT---Tagtgse~ 156 (371)
T 1o2d_A 107 G-GSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPT---TAGTGSEV 156 (371)
T ss_dssp S-HHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEEC---SSCCCGGG
T ss_pred C-hHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeC---CCchhhhh
Confidence 8 6777665554321 00 00 014789999999 55665444
No 12
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=94.07 E-value=0.17 Score=50.89 Aligned_cols=84 Identities=17% Similarity=0.226 Sum_probs=60.8
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE-eCC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~-T~~--~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+|++|+.++..-+ .+.+++...|+.+|+++.++. ... .....++ +.+...+.|.||.+|| |.+.++.-.+
T Consensus 35 ~~~livtd~~~~~-----~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGG-Gsv~D~aK~v 107 (354)
T 3ce9_A 35 KRVSLYFGEGIYE-----LFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGG-GKAIDAVKYM 107 (354)
T ss_dssp SEEEEEEETTHHH-----HHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEES-HHHHHHHHHH
T ss_pred CeEEEEECccHHH-----HHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECC-hHHHHHHHHH
Confidence 6899999886543 244789999999999887665 322 2234455 5554567899999998 8888887766
Q ss_pred hcCcCccccCCCcEEEecCc
Q 011290 187 LEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~~ 206 (489)
.-. ..+|+..||.+
T Consensus 108 A~~------~~~p~i~IPTT 121 (354)
T 3ce9_A 108 AFL------RKLPFISVPTS 121 (354)
T ss_dssp HHH------HTCCEEEEESC
T ss_pred Hhh------cCCCEEEecCc
Confidence 533 27999999993
No 13
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=93.79 E-value=0.11 Score=53.26 Aligned_cols=90 Identities=14% Similarity=0.119 Sum_probs=56.4
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+|++|+.+|..-+ .+.+++...|+. ++++..... .......++++.+...+.|.||.+|| |.+.++.-.+
T Consensus 53 ~r~liVtd~~~~~-----~~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~AK~i 125 (387)
T 3uhj_A 53 KRALVLIDRVLFD-----ALSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGG-GKTADTAKIV 125 (387)
T ss_dssp SEEEEEECTTTHH-----HHHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESS-HHHHHHHHHH
T ss_pred CEEEEEECchHHH-----HHHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHH
Confidence 7899999987643 245788889999 988722221 12233445555554457899999999 8888888876
Q ss_pred hcCcCccccCCCcEEEecCcCCCCccccc
Q 011290 187 LEREDWNDAIKVPLGVVPADFLDAGTGNG 215 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~~~~~~GSgN~ 215 (489)
... ..+|+..||. ++||+-.
T Consensus 126 A~~------~~~p~i~IPT---TagtgSe 145 (387)
T 3uhj_A 126 AID------TGARIVIAPT---IASTDAP 145 (387)
T ss_dssp HHH------TTCEEEECCS---SCCCSTT
T ss_pred HHh------cCCCEEEecC---cccCCcc
Confidence 643 2799999999 3455433
No 14
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=93.39 E-value=0.094 Score=53.12 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=63.1
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEE--EEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v--~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+|++|+.++..-+ .+.+++...|+.+++++.+ +.-+. .....++++.+...+.|.||.+|| |.+.++.-.+
T Consensus 32 ~~~livtd~~~~~-----~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~i 105 (370)
T 1jq5_A 32 NKTVVIADEIVWK-----IAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG-GKTLDTAKAV 105 (370)
T ss_dssp SEEEEEECHHHHH-----HTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHH
T ss_pred CeEEEEEChHHHH-----HHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHHH
Confidence 7999999875533 2457899999999998742 21121 223445555555567899999998 8888887776
Q ss_pred hcCcCccccCCCcEEEecCcCCCCcccccc
Q 011290 187 LEREDWNDAIKVPLGVVPADFLDAGTGNGM 216 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~~~~~~GSgN~~ 216 (489)
... ..+|+..||.+ +||+-.+
T Consensus 106 A~~------~~~p~i~IPTT---a~tgSev 126 (370)
T 1jq5_A 106 ADE------LDAYIVIVPTA---ASTDAPT 126 (370)
T ss_dssp HHH------HTCEEEEEESS---CCSSCTT
T ss_pred HHh------cCCCEEEeccc---cCCCccc
Confidence 532 26999999993 4554433
No 15
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=93.39 E-value=0.37 Score=49.01 Aligned_cols=94 Identities=17% Similarity=0.165 Sum_probs=60.7
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE---e-CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---T-TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~---T-~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
.+|++|+.++..-+.. .. +.+++...|+.+|+++.++. . .......++++.+...+.|.||.+|| |.+.++.-
T Consensus 33 ~~~~livtd~~~~~~~-~g-~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK 109 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIK-DG-AVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGG-GSPHDCGK 109 (387)
T ss_dssp CSEEEEECCTTTC--C-CS-SHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHH
T ss_pred CCEEEEEECcchhhcc-ch-HHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cchhhHHH
Confidence 3789999987654320 01 34789999999999876552 1 12334556666666678899999998 77777665
Q ss_pred HhhcC---c--Cc-------cccCCCcEEEecC
Q 011290 185 GLLER---E--DW-------NDAIKVPLGVVPA 205 (489)
Q Consensus 185 GL~~~---~--~~-------~~~~~~plgiIP~ 205 (489)
.+... + -| .....+|+..||.
T Consensus 110 ~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 142 (387)
T 3bfj_A 110 GIGIAATHEGDLYQYAGIETLTNPLPPIVAVNT 142 (387)
T ss_dssp HHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEEC
T ss_pred HHHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 54321 0 00 0113689999999
No 16
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=92.99 E-value=0.25 Score=50.26 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=63.4
Q ss_pred HHHhhhhcCCCcEEEEEEcCCCCCcccccc-chHhHHHHHHhCCCcEEEEEe----CChhHHHHHHHHhhcCCCceEEEE
Q 011290 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKI-FLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCV 173 (489)
Q Consensus 99 l~~~~~~~~rpkr~lviiNP~sG~~~a~~~-~~~~v~p~l~~a~i~~~v~~T----~~~~ha~el~~~~~~~~~d~IV~v 173 (489)
|.+.+...+ .+|++|+..+.- .+. +.+++...|+.+|+++.++.- .......++++.+...+.|.||.+
T Consensus 22 l~~~~~~~g-~~~~liVtd~~~-----~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIav 95 (383)
T 3ox4_A 22 AIKDLNGSG-FKNALIVSDAFM-----NKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISL 95 (383)
T ss_dssp HHHTTTTSC-CCEEEEEEEHHH-----HHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHcC-CCEEEEEECCch-----hhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEe
Confidence 334444333 478999988632 122 447899999999998866531 223345555555555678999999
Q ss_pred cCCChHHHHHHHhhcC---cC--c-------cccCCCcEEEecC
Q 011290 174 SGDGILVEVVNGLLER---ED--W-------NDAIKVPLGVVPA 205 (489)
Q Consensus 174 GGDGtl~EVvnGL~~~---~~--~-------~~~~~~plgiIP~ 205 (489)
|| |.+.++.-.+... +. | .....+|+..||.
T Consensus 96 GG-Gsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 138 (383)
T 3ox4_A 96 GG-GSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINT 138 (383)
T ss_dssp ES-HHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEEC
T ss_pred CC-cHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeC
Confidence 99 8887776554221 10 0 0123689999999
No 17
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=92.88 E-value=0.35 Score=49.39 Aligned_cols=89 Identities=13% Similarity=0.158 Sum_probs=61.1
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC------ChhHHHHHHHHhhcCC---CceEEEEcCCCh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDLSK---YDGIVCVSGDGI 178 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~------~~~ha~el~~~~~~~~---~d~IV~vGGDGt 178 (489)
..+|++|+.++...+ .+.+++...|+.+|+++.++.-. ......++.+.+...+ .|.||.+|| |.
T Consensus 61 ~~~rvlIVtd~~v~~-----~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGG-Gs 134 (390)
T 3okf_A 61 AKQKVVIVTNHTVAP-----LYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGG-GV 134 (390)
T ss_dssp TTCEEEEEEETTTHH-----HHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEES-HH
T ss_pred CCCEEEEEECCcHHH-----HHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECC-cH
Confidence 357999999987642 36678999999999988764322 2334555555554333 479999988 88
Q ss_pred HHHHHHHhhcCcCccccCCCcEEEecCc
Q 011290 179 LVEVVNGLLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 179 l~EVvnGL~~~~~~~~~~~~plgiIP~~ 206 (489)
+.++.-...... ...+|+..||.+
T Consensus 135 v~D~ak~~Aa~~----~rgip~I~IPTT 158 (390)
T 3okf_A 135 IGDLVGFAAACY----QRGVDFIQIPTT 158 (390)
T ss_dssp HHHHHHHHHHHB----TTCCEEEEEECS
T ss_pred HhhHHHHHHHHh----cCCCCEEEeCCC
Confidence 888877653211 127999999994
No 18
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=92.77 E-value=0.34 Score=49.67 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=59.8
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T----~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+..+.+-.. .. +.+++...|+.+|+++.++.- .......++++.+...+.|.||.+|| |.+-++.-.
T Consensus 44 ~r~liVtd~~~~~~--~g-~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~ 119 (407)
T 1vlj_A 44 RKVLFLYGGGSIKK--NG-VYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGG-GSVVDSAKA 119 (407)
T ss_dssp CEEEEEECSSHHHH--SS-HHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHH
T ss_pred CeEEEEECchHHhh--cc-HHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hhHHHHHHH
Confidence 68999987443211 11 346899999999998876532 12344556666666678899999998 777776655
Q ss_pred hhcC---c--Ccc-------ccCCCcEEEecC
Q 011290 186 LLER---E--DWN-------DAIKVPLGVVPA 205 (489)
Q Consensus 186 L~~~---~--~~~-------~~~~~plgiIP~ 205 (489)
+... + -|+ ....+|+..||.
T Consensus 120 iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 151 (407)
T 1vlj_A 120 VAAGALYEGDIWDAFIGKYQIEKALPIFDVLT 151 (407)
T ss_dssp HHHHTTCSSCGGGGGGTSCCCCCCCCEEEEEC
T ss_pred HHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 4331 0 000 114689999999
No 19
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=91.81 E-value=0.24 Score=50.41 Aligned_cols=92 Identities=14% Similarity=0.198 Sum_probs=59.3
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T----~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
.+|++|+..+...+ .. +.+++...|+.+|+++.++.- .......++++.+...+.|.||.+|| |.+.++.-
T Consensus 31 ~~~~livtd~~~~~---~g-~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK 105 (386)
T 1rrm_A 31 YQKALIVTDKTLVQ---CG-VVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGG-GSPQDTCK 105 (386)
T ss_dssp CCEEEEECBHHHHH---TT-HHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHH
T ss_pred CCEEEEEECcchhh---ch-HHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHHHH
Confidence 46899998764421 11 447899999999998765531 13334556666665567899999998 77777655
Q ss_pred HhhcC---cC----cc-------ccCCCcEEEecC
Q 011290 185 GLLER---ED----WN-------DAIKVPLGVVPA 205 (489)
Q Consensus 185 GL~~~---~~----~~-------~~~~~plgiIP~ 205 (489)
.+... +. |+ ....+|+..||.
T Consensus 106 ~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 140 (386)
T 1rrm_A 106 AIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPT 140 (386)
T ss_dssp HHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEEC
T ss_pred HHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 44221 10 00 023689999999
No 20
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=91.71 E-value=0.21 Score=52.14 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=61.5
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEE--EEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT--VQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~--v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+|++|+.++..-+ .+.+++...|+.+|+++. ++.-+.. ....++++.+.. +.|.||.+|| |.+.++.-.+
T Consensus 92 ~rvlIVtd~~~~~-----~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGG-GSviD~AK~i 164 (450)
T 1ta9_A 92 KSAVVLADQNVWN-----ICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGG-GKTMDSAKYI 164 (450)
T ss_dssp SEEEEEEEHHHHH-----HTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEES-HHHHHHHHHH
T ss_pred CEEEEEECccHHH-----HHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCC-cHHHHHHHHH
Confidence 4899999875533 245789999999999874 2222222 234444444444 8899999998 8888887776
Q ss_pred hcCcCccccCCCcEEEecCcCCCCcccccc
Q 011290 187 LEREDWNDAIKVPLGVVPADFLDAGTGNGM 216 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~~~~~~GSgN~~ 216 (489)
... ..+|+..||.+ +||+-.+
T Consensus 165 A~~------~giP~I~IPTT---AgtgSev 185 (450)
T 1ta9_A 165 AHS------MNLPSIICPTT---ASSDAAT 185 (450)
T ss_dssp HHH------TTCCEEEEESS---CSCSCTT
T ss_pred HHh------cCCCEEEEeCC---CccCccc
Confidence 532 37999999993 5555443
No 21
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=90.25 E-value=0.61 Score=47.58 Aligned_cols=95 Identities=8% Similarity=0.096 Sum_probs=61.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhC------CCcEEEEEe------CChhHHHHHHHHhhcCC--C---ceEE
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA------NIQFTVQET------TQQLHAKEIVKVLDLSK--Y---DGIV 171 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a------~i~~~v~~T------~~~~ha~el~~~~~~~~--~---d~IV 171 (489)
.+|++|+.++... +.+.+++...|+.+ ++++.++.- .......++.+.+...+ . |.||
T Consensus 36 ~~k~liVtd~~v~-----~~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iI 110 (393)
T 1sg6_A 36 STTYVLVTDTNIG-----SIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVI 110 (393)
T ss_dssp CSEEEEEEEHHHH-----HHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEE
T ss_pred CCeEEEEECCcHH-----HHHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEE
Confidence 4789999986432 23567888899887 777653222 12344455655554445 5 9999
Q ss_pred EEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccc
Q 011290 172 CVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGM 216 (489)
Q Consensus 172 ~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~ 216 (489)
.+|| |.+.++.-.....- ...+|+..||. +.||+.+.
T Consensus 111 alGG-Gsv~D~ak~~Aa~~----~rgip~i~IPT---Tlla~~da 147 (393)
T 1sg6_A 111 ALGG-GVIGDLTGFVASTY----MRGVRYVQVPT---TLLAMVDS 147 (393)
T ss_dssp EEES-HHHHHHHHHHHHHG----GGCCEEEEEEC---SHHHHHTT
T ss_pred EECC-cHHHHHHHHHHHHh----cCCCCEEEECC---chhhhhhc
Confidence 9998 77777766554211 02799999999 34555555
No 22
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=88.68 E-value=0.17 Score=51.32 Aligned_cols=91 Identities=14% Similarity=0.283 Sum_probs=59.2
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChh-HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhc
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~-ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~ 188 (489)
+|++|+.++..-+ ..+.+++...|+.+++.+.++.-+... ...++++.+.. +.|.||.+|| |.+.++.-.+..
T Consensus 42 ~~~liVtd~~~~~----~~~~~~v~~~L~~~g~~~~~~~ge~~~~~v~~~~~~~~~-~~d~IIavGG-Gsv~D~aK~iA~ 115 (376)
T 1kq3_A 42 ERAFVVIDDFVDK----NVLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLVEE-ETDVVVGIGG-GKTLDTAKAVAY 115 (376)
T ss_dssp SEEEEEECHHHHH----HTTCTTGGGGCSSSEEEEEECCSSCBHHHHHHHHTTCCT-TCCEEEEEES-HHHHHHHHHHHH
T ss_pred CeEEEEECccHHh----hccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHhc-CCCEEEEeCC-cHHHHHHHHHHH
Confidence 7999999864321 111357777888777655554333222 34445544444 8899999998 888888777664
Q ss_pred CcCccccCCCcEEEecCcCCCCccccc
Q 011290 189 REDWNDAIKVPLGVVPADFLDAGTGNG 215 (489)
Q Consensus 189 ~~~~~~~~~~plgiIP~~~~~~GSgN~ 215 (489)
. ..+|+..||.+ +||+-.
T Consensus 116 ~------~~~p~i~IPTT---a~tgSe 133 (376)
T 1kq3_A 116 K------LKKPVVIVPTI---ASTDAP 133 (376)
T ss_dssp H------TTCCEEEEESS---CCCSCT
T ss_pred h------cCCCEEEecCc---cccCcc
Confidence 2 37999999993 555433
No 23
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=87.44 E-value=0.83 Score=46.74 Aligned_cols=90 Identities=20% Similarity=0.225 Sum_probs=55.8
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC----ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~----~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+|++|+.++.+-+.. . +.+++...|+ |+++.++.-. ......++++.+...+.|.||.+|| |.+-++.-.
T Consensus 51 ~r~liVtd~~~~~~~--g-~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~ 124 (408)
T 1oj7_A 51 ARVLITYGGGSVKKT--G-VLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGG-GSVLDGTKF 124 (408)
T ss_dssp CEEEEEECSSHHHHH--S-HHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEES-HHHHHHHHH
T ss_pred CEEEEEECCchhhhc--c-HHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHHHH
Confidence 789999876532211 1 3367888886 7877655321 3344555666555567899999998 777776655
Q ss_pred hhc---CcC----c--------cccCCCcEEEecC
Q 011290 186 LLE---RED----W--------NDAIKVPLGVVPA 205 (489)
Q Consensus 186 L~~---~~~----~--------~~~~~~plgiIP~ 205 (489)
+.. .+. | .....+|+..||.
T Consensus 125 iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPT 159 (408)
T 1oj7_A 125 IAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLT 159 (408)
T ss_dssp HHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEES
T ss_pred HHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeC
Confidence 433 111 0 0114689999999
No 24
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=86.40 E-value=0.58 Score=47.07 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=57.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T----~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
.+|++|+..+.. ... .+++...|+..+ +.++.- .......++++.+...+.|.||.+|| |.+.++.-
T Consensus 34 ~~r~liVtd~~~-----~~~-~~~v~~~L~~~~--~~v~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK 104 (353)
T 3hl0_A 34 LSRALVLSTPQQ-----KGD-AEALASRLGRLA--AGVFSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGG-GSTTGLGK 104 (353)
T ss_dssp CCCEEEECCGGG-----HHH-HHHHHHHHGGGE--EEEECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHH
T ss_pred CCEEEEEecCch-----hhH-HHHHHHHHhhCC--cEEecCcCCCCcHHHHHHHHHHHhccCCCEEEEeCC-cHHHHHHH
Confidence 367999987642 123 368888898754 344321 12234556666665578999999999 99999888
Q ss_pred HhhcCcCccccCCCcEEEecCc
Q 011290 185 GLLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~~ 206 (489)
.+... ..+|+..||.+
T Consensus 105 ~iA~~------~~~p~i~IPTT 120 (353)
T 3hl0_A 105 AIALR------TDAAQIVIPTT 120 (353)
T ss_dssp HHHHH------HCCEEEEEECS
T ss_pred HHHhc------cCCCEEEEeCC
Confidence 77654 27999999994
No 25
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=86.31 E-value=2.4 Score=42.85 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=58.0
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC------hhHHHHHHHHh---hcCCCceEEEEcCCChHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVL---DLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~------~~ha~el~~~~---~~~~~d~IV~vGGDGtl~ 180 (489)
+|++|+.++...+ .+ +++...|+.+|+++.++.-.. .....++.+.+ ...+.|.||.+|| |.+.
T Consensus 44 ~rvlIVtd~~v~~-----~~-~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGG-Gsv~ 116 (368)
T 3qbe_A 44 HKVAVVHQPGLAE-----TA-EEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGG-GAAT 116 (368)
T ss_dssp SEEEEEECGGGHH-----HH-HHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHH
T ss_pred CEEEEEECccHHH-----HH-HHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHH
Confidence 7999999987532 34 689999999999876654321 12334444433 3356799999998 8888
Q ss_pred HHHHHhhcCcCccccCCCcEEEecC
Q 011290 181 EVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 181 EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
++.-...... ...+|+..||.
T Consensus 117 D~ak~~Aa~~----~rgip~i~IPT 137 (368)
T 3qbe_A 117 DVAGFAAATW----LRGVSIVHLPT 137 (368)
T ss_dssp HHHHHHHHHG----GGCCEEEEEEC
T ss_pred HHHHHHHHHh----ccCCcEEEECC
Confidence 8776654211 12689999998
No 26
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=86.30 E-value=1.2 Score=44.93 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=57.0
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC----ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~----~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
.+|++|+..|.. ... .+++...|+.++ +.++.-. ......+.++.+...+.|.||.+|| |.+.++.-
T Consensus 36 ~~r~liVtd~~~-----~~~-~~~v~~~L~~~~--~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~aK 106 (358)
T 3jzd_A 36 AKRALVLCTPNQ-----QAE-AERIADLLGPLS--AGVYAGAVMHVPIESARDATARAREAGADCAVAVGG-GSTTGLGK 106 (358)
T ss_dssp CSCEEEECCGGG-----HHH-HHHHHHHHGGGE--EEEECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHH
T ss_pred CCeEEEEeCCcH-----HHH-HHHHHHHhccCC--EEEecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCC-cHHHHHHH
Confidence 368999987742 223 367888898764 4443211 2234555555555567899999999 99999888
Q ss_pred HhhcCcCccccCCCcEEEecCc
Q 011290 185 GLLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~~ 206 (489)
.+... ..+|+..||.+
T Consensus 107 ~iA~~------~~~p~i~IPTT 122 (358)
T 3jzd_A 107 AIALE------TGMPIVAIPTT 122 (358)
T ss_dssp HHHHH------HCCCEEEEECS
T ss_pred HHHhc------cCCCEEEEeCC
Confidence 77654 27999999994
No 27
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=84.22 E-value=3.1 Score=41.82 Aligned_cols=87 Identities=10% Similarity=0.030 Sum_probs=56.8
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe-C-----ChhHHHHHHHHhh---cCCCceEEEEcCCCh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-T-----QQLHAKEIVKVLD---LSKYDGIVCVSGDGI 178 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T-~-----~~~ha~el~~~~~---~~~~d~IV~vGGDGt 178 (489)
..+|++|+.++...+ .+.+++...|+.+ +++.++.- . ......++.+.+. .++.|.||.+|| |.
T Consensus 33 ~~~k~liVtd~~v~~-----~~~~~v~~~L~~~-~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGG-Gs 105 (368)
T 2gru_A 33 EFDQYIMISDSGVPD-----SIVHYAAEYFGKL-APVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGG-GL 105 (368)
T ss_dssp SCSEEEEEEETTSCH-----HHHHHHHHHHTTT-SCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEES-HH
T ss_pred CCCEEEEEECCcHHH-----HHHHHHHHHHHhc-cceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECC-hH
Confidence 357999999987643 2557889999887 76643321 1 2223344443333 345799999998 88
Q ss_pred HHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 179 LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 179 l~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.++.-.....- ...+|+-.||.
T Consensus 106 v~D~ak~~Aa~~----~rgip~i~IPT 128 (368)
T 2gru_A 106 TGNVAGVAAGMM----FRGIALIHVPT 128 (368)
T ss_dssp HHHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHHHHh----cCCCCEEEECC
Confidence 888776654211 02699999999
No 28
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=79.17 E-value=5.3 Score=40.37 Aligned_cols=96 Identities=11% Similarity=0.198 Sum_probs=55.2
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe----CChhHHHHHHHHhh---cCCCceEEEEcCCChHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLD---LSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T----~~~~ha~el~~~~~---~~~~d~IV~vGGDGtl~E 181 (489)
.++++|+..|.--+ ..+...|+.+++++.++.- .......++++.+. ..+.|.||.+|| |.+-+
T Consensus 53 ~~~~liVtd~~~~~--------~~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIavGG-GS~iD 123 (375)
T 3rf7_A 53 NDFVVFLVDDVHQH--------KPLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGLGG-GSTMD 123 (375)
T ss_dssp TCCEEEEEEGGGTT--------SHHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEEEES-HHHHH
T ss_pred CCeEEEEECchhhh--------hHHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEEeCC-cHHHH
Confidence 36788888764211 1355567778888766532 11223333443333 234999999999 88777
Q ss_pred HHHHhhcC---cC-------cc--ccCCCcEEEecCcCCCCcccccc
Q 011290 182 VVNGLLER---ED-------WN--DAIKVPLGVVPADFLDAGTGNGM 216 (489)
Q Consensus 182 VvnGL~~~---~~-------~~--~~~~~plgiIP~~~~~~GSgN~~ 216 (489)
+.-.+... +. |+ ....+|+..||. ++|||--+
T Consensus 124 ~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT---TagtgSev 167 (375)
T 3rf7_A 124 LAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPT---VSGTGAEA 167 (375)
T ss_dssp HHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEES---SCSSCTTT
T ss_pred HHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcC---CCccchhh
Confidence 76654321 10 10 112589999998 34554443
No 29
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=78.04 E-value=4.2 Score=40.60 Aligned_cols=84 Identities=12% Similarity=0.171 Sum_probs=48.8
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC------ChhHHHHHHHHhhcCCC---ceEEEEcCCChHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDLSKY---DGIVCVSGDGILV 180 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~------~~~ha~el~~~~~~~~~---d~IV~vGGDGtl~ 180 (489)
+|++|+.++... +.+.+++...| .+| +++++.-. ......++++.+...+. |.||.+|| |.+.
T Consensus 32 ~~~liVtd~~~~-----~~~~~~v~~~L-~~g-~~~~~~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~ 103 (354)
T 1xah_A 32 DQSFLLIDEYVN-----QYFANKFDDIL-SYE-NVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGG-GATG 103 (354)
T ss_dssp SCEEEEEEHHHH-----HHHHHHHC--------CEEEEEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEES-HHHH
T ss_pred CeEEEEECCcHH-----HHHHHHHHHHH-hcC-CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEECC-hHHH
Confidence 789999986432 22557888888 777 44432211 23344455555544455 89999998 7888
Q ss_pred HHHHHhhcCcCccccCCCcEEEecC
Q 011290 181 EVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 181 EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
++.-.+.... ...+|+..||.
T Consensus 104 D~ak~vA~~~----~rgip~i~IPT 124 (354)
T 1xah_A 104 DFAGFVAATL----LRGVHFIQVPT 124 (354)
T ss_dssp HHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHHh----ccCCCEEEECC
Confidence 7766654211 12799999999
No 30
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=74.12 E-value=2.8 Score=41.78 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC----ChhHHHHHHHHhhcCCC---ceEEEEcCCChHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKY---DGIVCVSGDGILVE 181 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~----~~~ha~el~~~~~~~~~---d~IV~vGGDGtl~E 181 (489)
.+|++|+.++...+ .+.+++...|+.+++.+.++.-- ......++.+.+...+. |.||.+|| |.+.+
T Consensus 26 ~~~~livtd~~v~~-----~~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~D 99 (343)
T 3clh_A 26 KQKALIISDSIVAG-----LHLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGG-GVISD 99 (343)
T ss_dssp SSCEEEEEEHHHHT-----TTHHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHHTTCCTTCEEEEEES-HHHHH
T ss_pred CCEEEEEECCcHHH-----HHHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCceEEEECC-hHHHH
Confidence 46899999875432 24567887787665544333221 23344455555544445 99999998 77777
Q ss_pred HHHHhhcCcCccccCCCcEEEecCc
Q 011290 182 VVNGLLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 182 VvnGL~~~~~~~~~~~~plgiIP~~ 206 (489)
+.-...... ...+|+..||.+
T Consensus 100 ~ak~~A~~~----~rgip~i~IPTT 120 (343)
T 3clh_A 100 MVGFASSIY----FRGIDFINIPTT 120 (343)
T ss_dssp HHHHHHHHB----TTCCEEEEEECS
T ss_pred HHHHHHHHh----ccCCCEEEeCCc
Confidence 766554211 027999999983
No 31
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=74.09 E-value=1.1 Score=45.12 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=52.6
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T----~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
.+|++|+..|.. ...+ +++...|+ .+.++.- .......+.++.+...+.|.||.+|| |.+.++..
T Consensus 37 ~~rvliVtd~~~-----~~~~-~~v~~~L~----~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK 105 (364)
T 3iv7_A 37 SAKVMVIAGERE-----MSIA-HKVASEIE----VAIWHDEVVMHVPIEVAERARAVATDNEIDLLVCVGG-GSTIGLAK 105 (364)
T ss_dssp CSSEEEECCGGG-----HHHH-HHHTTTSC----CSEEECCCCTTCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHH
T ss_pred CCEEEEEECCCH-----HHHH-HHHHHHcC----CCEEEcceecCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHH
Confidence 367899987642 1233 45555554 2222211 12344556666665678999999999 89888888
Q ss_pred HhhcCcCccccCCCcEEEecCc
Q 011290 185 GLLEREDWNDAIKVPLGVVPAD 206 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~~ 206 (489)
.+... ..+|+..||.+
T Consensus 106 ~iA~~------~~~P~i~IPTT 121 (364)
T 3iv7_A 106 AIAMT------TALPIVAIPTT 121 (364)
T ss_dssp HHHHH------HCCCEEEEECS
T ss_pred HHHhc------cCCCEEEEcCC
Confidence 77654 27999999994
No 32
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=70.47 E-value=6 Score=33.60 Aligned_cols=86 Identities=13% Similarity=0.146 Sum_probs=52.1
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcC-CCceEEEEc---CC--ChHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS-KYDGIVCVS---GD--GILVEVV 183 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~-~~d~IV~vG---GD--Gtl~EVv 183 (489)
++++|++--.. |.++++ .+.+...+...|++++++...... .-++. ++|.||++. |+ |.+...+
T Consensus 2 ~ki~I~y~S~t--GnT~~~-A~~ia~~l~~~g~~v~~~~~~~~~-------~~~l~~~~d~ii~g~pty~~~~G~~p~~~ 71 (148)
T 3f6r_A 2 SKVLIVFGSST--GNTESI-AQKLEELIAAGGHEVTLLNAADAS-------AENLADGYDAVLFGCSAWGMEDLEMQDDF 71 (148)
T ss_dssp CEEEEEEECSS--SHHHHH-HHHHHHHHHTTTCEEEEEETTTBC-------CTTTTTTCSEEEEEECEECSSSCEECHHH
T ss_pred CeEEEEEECCC--chHHHH-HHHHHHHHHhCCCeEEEEehhhCC-------HhHhcccCCEEEEEecccCCCCCCCcHHH
Confidence 57888885544 455543 467888899899988887644321 11345 789888776 55 7766655
Q ss_pred HHhhcCcCccccCCCcEEEecC
Q 011290 184 NGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 184 nGL~~~~~~~~~~~~plgiIP~ 205 (489)
..++++-........+++++-.
T Consensus 72 ~~fl~~l~~~~l~~k~~~vfg~ 93 (148)
T 3f6r_A 72 LSLFEEFDRIGLAGRKVAAFAS 93 (148)
T ss_dssp HHHHTTGGGTCCTTCEEEEEEE
T ss_pred HHHHHHhhccCCCCCEEEEEEe
Confidence 5565542111123456666644
No 33
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=68.77 E-value=30 Score=32.01 Aligned_cols=88 Identities=15% Similarity=0.300 Sum_probs=58.6
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++.+.+.|++...+.. --..++ +-++..+++.|+.+.+..+... ....++++.+...++|+||+.+.+. .+.++.
T Consensus 5 ~~s~~Igvi~~~~~~~-~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~ 80 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDY-FSTELF-KGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQE 80 (276)
T ss_dssp CCCCEEEEEESCTTSH-HHHHHH-HHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHH
T ss_pred CCCcEEEEEeCCCCch-HHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHH
Confidence 4556677776433221 112233 5677888889999888877643 2334566777667899999999998 777777
Q ss_pred hhcCcCccccCCCcEEEecC
Q 011290 186 LLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~ 205 (489)
+... .+|+-.+=.
T Consensus 81 l~~~-------~iPvV~i~~ 93 (276)
T 3jy6_A 81 ILHQ-------QMPVVSVDR 93 (276)
T ss_dssp HHTT-------SSCEEEESC
T ss_pred HHHC-------CCCEEEEec
Confidence 7654 678776644
No 34
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=67.19 E-value=10 Score=37.49 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=39.0
Q ss_pred HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 154 ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.-.++++.+...+.|.+|++|||||+.- ++.|.+. .+|+--||. ==-|++..
T Consensus 82 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~-------~i~vvgiPk-----TIDNDl~~ 133 (320)
T 1pfk_A 82 IRAVAIENLKKRGIDALVVIGGDGSYMG-AMRLTEM-------GFPCIGLPG-----TIDNDIKG 133 (320)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECHHHHHH-HHHHHHT-------TCCEEEEEB-----CTTCCCTT
T ss_pred HHHHHHHHHHHcCCCEEEEECCCchHHH-HHHHHhh-------CCCEEEEec-----cccCCCCC
Confidence 4455666676678899999999999765 3445543 689999999 66788874
No 35
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=65.99 E-value=8.7 Score=37.90 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=39.4
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 153 ~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
..-.++++.+...+.|.+|++|||||+.- ++.|.+. .+|+--||. ==-|++..
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~-------~i~vvgiPk-----TIDNDl~~ 132 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHG-ALQLTRH-------GFNSIGLPG-----TIDNDIPY 132 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHH-HHHHHHT-------TCCEEEEEE-----ETTCCCTT
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHH-HHHHHHh-------CCCEEEEee-----cccCCCCC
Confidence 34556667776678899999999999764 4445543 689999998 66788864
No 36
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=65.86 E-value=37 Score=29.98 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=45.9
Q ss_pred hHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcCCCc-eEEEEcCCChHHHHHHHhhc
Q 011290 130 LDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~~~d-~IV~vGGDGtl~EVvnGL~~ 188 (489)
.+++...|+..|++|++... ..+.+..++++++...+.+ .|++.|+.+-|--++-++..
T Consensus 19 ~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 81 (163)
T 3ors_A 19 MQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTT 81 (163)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccC
Confidence 36788899999999998775 3355667788877665666 46667999999999999865
No 37
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=65.09 E-value=24 Score=33.27 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=52.2
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+.-+|+.+|.+|... .+.... +-.+..++++|+++............+.++++. .++|+|+| +.|.+...++..+
T Consensus 131 pg~~~I~~i~~~~~~--~~~~r~-~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~-~~~dai~~-~~D~~a~g~~~~l 205 (295)
T 3lft_A 131 PNVKTIGALYSSSED--NSKTQV-EEFKAYAEKAGLTVETFAVPSTNEIASTVTVMT-SKVDAIWV-PIDNTIASGFPTV 205 (295)
T ss_dssp TTCCEEEEEEETTCH--HHHHHH-HHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHT-TTCSEEEE-CSCHHHHHTHHHH
T ss_pred CCCcEEEEEeCCCCc--chHHHH-HHHHHHHHHcCCEEEEEecCCHHHHHHHHHHHH-hcCCEEEE-CCchhHHHHHHHH
Confidence 456899999998542 233223 467788899999876655555566677777764 57887766 5788776666655
Q ss_pred hc
Q 011290 187 LE 188 (489)
Q Consensus 187 ~~ 188 (489)
.+
T Consensus 206 ~~ 207 (295)
T 3lft_A 206 VS 207 (295)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 38
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=64.34 E-value=6.7 Score=40.98 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=56.2
Q ss_pred cEEEEEEcCCCCCc-----cccccchHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHH-
Q 011290 110 KRLYIFVNPFGGKK-----IASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEV- 182 (489)
Q Consensus 110 kr~lviiNP~sG~~-----~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl~EV- 182 (489)
.+++-|.|=+.|=- +-..+-.+.|..++..-|- +.-|.+. ....++++.+...+.|.+|++|||||+.-+
T Consensus 130 ~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGT---iLGTsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~ 206 (487)
T 2hig_A 130 KRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGT---ILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGAL 206 (487)
T ss_dssp SEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSC---SSCCCCSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHH
T ss_pred cEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCC---eeccCCCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHH
Confidence 36888888777652 2222212356666665442 1111111 112355666655678999999999998732
Q ss_pred --HHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 183 --VNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 183 --vnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.+.+.++ ..++|+--||. ==-|++..
T Consensus 207 ~L~e~~~~~-----g~~i~vVGIPk-----TIDNDl~g 234 (487)
T 2hig_A 207 VISQEAKRR-----GVDISVFGVPK-----TIDNDLSF 234 (487)
T ss_dssp HHHHHHHHH-----TCCCEEEEEEC-----CTTSSCCC
T ss_pred HHHHHHHHh-----CCCceEEeccc-----cccCCCCC
Confidence 2222222 24689999999 66788864
No 39
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=64.30 E-value=18 Score=33.30 Aligned_cols=88 Identities=7% Similarity=0.120 Sum_probs=56.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~ 187 (489)
.+.+.|++...+..- -.. +.+-++..+++.|+++.+..+.. .....++++.+...++|+||+.+.+..-.+.++.+.
T Consensus 2 s~~Igvi~~~~~~~~-~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 2 TRTLGFILPDLENPS-YAR-IAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CCEEEEEESCTTCHH-HHH-HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred ceEEEEEeCCCcChh-HHH-HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 456667765433221 122 23567788888999988887764 333445667776678999999998844355666565
Q ss_pred cCcCccccCCCcEEEecC
Q 011290 188 EREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 188 ~~~~~~~~~~~plgiIP~ 205 (489)
.. .+|+-.+=.
T Consensus 80 ~~-------~iPvV~~~~ 90 (272)
T 3o74_A 80 DK-------GLPVIAIDR 90 (272)
T ss_dssp HT-------TCCEEEESS
T ss_pred Hc-------CCCEEEEcc
Confidence 54 677766644
No 40
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=63.98 E-value=30 Score=32.17 Aligned_cols=90 Identities=10% Similarity=0.094 Sum_probs=57.2
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChH-HHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVN 184 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl-~EVvn 184 (489)
++.+++.|++...+..- -..+ .+-++..+++.|+++.+..+... ....+.++.+...++|+||+.+.|... .+.++
T Consensus 6 ~~~~~Ig~i~~~~~~~~-~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 83 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEF-AQRL-INAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIE 83 (293)
T ss_dssp ---CEEEEEESCSCSHH-HHHH-HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHH
T ss_pred CCCcEEEEEEecCCcHH-HHHH-HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 44566777775433221 1222 35677888889999888877643 333456677766789999999887654 36677
Q ss_pred HhhcCcCccccCCCcEEEecC
Q 011290 185 GLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~ 205 (489)
.+... .+|+-.+-.
T Consensus 84 ~~~~~-------~iPvV~~~~ 97 (293)
T 3l6u_A 84 EAKKA-------GIPVFAIDR 97 (293)
T ss_dssp HHHHT-------TCCEEEESS
T ss_pred HHHHc-------CCCEEEecC
Confidence 66654 688777654
No 41
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=62.91 E-value=6.7 Score=38.77 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=46.0
Q ss_pred cEEEEEEcCCCCCcc-ccccchHhHHHHHHhCCCcEEEEEeC----------ChhHHHHHHHHhhcCCCceEEEE-cCCC
Q 011290 110 KRLYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETT----------QQLHAKEIVKVLDLSKYDGIVCV-SGDG 177 (489)
Q Consensus 110 kr~lviiNP~sG~~~-a~~~~~~~v~p~l~~a~i~~~v~~T~----------~~~ha~el~~~~~~~~~d~IV~v-GGDG 177 (489)
.--.-||-|.|+-+. ....+ +.....|+..|.++.+-.+- .+..|.++.+.+.....++|+|+ ||+|
T Consensus 12 GD~I~ivaPSs~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 90 (327)
T 4h1h_A 12 GDEIRIIAPSRSIGIMADNQV-EIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGGFN 90 (327)
T ss_dssp TCEEEEECSSSCGGGSCHHHH-HHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCSC
T ss_pred CCEEEEEeCCCCcCccCHHHH-HHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCchh
Confidence 335667889887532 23334 45677889999877654322 22456677777776788999886 9999
Q ss_pred hH
Q 011290 178 IL 179 (489)
Q Consensus 178 tl 179 (489)
+.
T Consensus 91 ~~ 92 (327)
T 4h1h_A 91 SN 92 (327)
T ss_dssp GG
T ss_pred HH
Confidence 73
No 42
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=62.84 E-value=27 Score=32.66 Aligned_cols=90 Identities=8% Similarity=0.078 Sum_probs=53.6
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++.+.+.|++.-.+ ..--.. +.+-++..+++.|+++.+..+.. .....++++.+...++|+||+++.+.+-.+++..
T Consensus 18 ~~~~~Ig~i~~~~~-~~~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 95 (293)
T 2iks_A 18 GRTRSIGLVIPDLE-NTSYTR-IANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQR 95 (293)
T ss_dssp CCCCEEEEEESCSC-SHHHHH-HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHT
T ss_pred CCCcEEEEEeCCCc-CcHHHH-HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHH
Confidence 45566777764322 211122 22456777888899888776653 2333456667666789999999887643334444
Q ss_pred hhcCcCccccCCCcEEEecC
Q 011290 186 LLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~ 205 (489)
+.. ..+|+-.+-.
T Consensus 96 ~~~-------~~iPvV~~~~ 108 (293)
T 2iks_A 96 WAN-------DPFPIVALDR 108 (293)
T ss_dssp TTT-------SSSCEEEEES
T ss_pred HHh-------CCCCEEEECC
Confidence 432 2677766643
No 43
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=62.79 E-value=35 Score=31.64 Aligned_cols=89 Identities=15% Similarity=0.042 Sum_probs=57.4
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCC-hHHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNG 185 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDG-tl~EVvnG 185 (489)
+.+++.|++...+..- -.. +.+-++..+++.|+++.+..+... ....+.++.+...++|+||+.+.|. ...+.++.
T Consensus 4 ~~~~Ig~i~~~~~~~~-~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~ 81 (291)
T 3l49_A 4 EGKTIGITAIGTDHDW-DLK-AYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQK 81 (291)
T ss_dssp TTCEEEEEESCCSSHH-HHH-HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChH-HHH-HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH
Confidence 4566777765433211 122 235678888889998888766542 2334556666667899999999985 35566666
Q ss_pred hhcCcCccccCCCcEEEecC
Q 011290 186 LLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~ 205 (489)
+... .+|+-.+-.
T Consensus 82 ~~~~-------~iPvV~~~~ 94 (291)
T 3l49_A 82 INDA-------GIPLFTVDT 94 (291)
T ss_dssp HHHT-------TCCEEEESC
T ss_pred HHHC-------CCcEEEecC
Confidence 6554 688777655
No 44
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=62.77 E-value=27 Score=30.94 Aligned_cols=70 Identities=10% Similarity=0.013 Sum_probs=45.4
Q ss_pred HhhhhcCCCcEEEEEEcCCCC-------CccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhc----CCCce
Q 011290 101 DFIDSFGRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL----SKYDG 169 (489)
Q Consensus 101 ~~~~~~~rpkr~lviiNP~sG-------~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~----~~~d~ 169 (489)
+.+.-..+|+.+.+|||-..= .+.+...=.+.++.+|+..|++++++.=-...+..+.++++.. ..+|.
T Consensus 24 ~~Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~dh~~~dc 103 (167)
T 1pyo_A 24 LAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEMQEKLQNFAQLPAHRVTDS 103 (167)
T ss_dssp GBCCCCCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHTCGGGGTSSE
T ss_pred ccccCCCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHhhhhhhccCCCE
Confidence 445444667888888886521 1233333346799999999999888876666667766666543 34664
Q ss_pred E
Q 011290 170 I 170 (489)
Q Consensus 170 I 170 (489)
+
T Consensus 104 ~ 104 (167)
T 1pyo_A 104 C 104 (167)
T ss_dssp E
T ss_pred E
Confidence 3
No 45
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=62.53 E-value=49 Score=31.10 Aligned_cols=87 Identities=13% Similarity=0.053 Sum_probs=56.5
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLL 187 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~ 187 (489)
+.+.|++...+..-- ..+ .+-++..+++.|+++.+..+... ....++++.+...++|+||+.+.|.. +.+.+..+.
T Consensus 3 ~~Igvi~~~~~~~~~-~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (313)
T 3m9w_A 3 VKIGMAIDDLRLERW-QKD-RDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK 80 (313)
T ss_dssp CEEEEEESCCSSSTT-HHH-HHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHH
T ss_pred cEEEEEeCCCCChHH-HHH-HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 455566543333222 223 35678888889998888776532 23345666766678999999998875 356777666
Q ss_pred cCcCccccCCCcEEEecC
Q 011290 188 EREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 188 ~~~~~~~~~~~plgiIP~ 205 (489)
+. .+|+-.+-.
T Consensus 81 ~~-------~iPvV~~~~ 91 (313)
T 3m9w_A 81 QE-------GIKVLAYDR 91 (313)
T ss_dssp TT-------TCEEEEESS
T ss_pred HC-------CCeEEEECC
Confidence 54 678777655
No 46
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=62.39 E-value=37 Score=31.89 Aligned_cols=94 Identities=15% Similarity=0.193 Sum_probs=50.3
Q ss_pred CcEEEEEEcCCCC----CccccccchHhH---HHHHHhCCCcEEEEEeCCh--------------------------hHH
Q 011290 109 PKRLYIFVNPFGG----KKIASKIFLDDV---KPLLEDANIQFTVQETTQQ--------------------------LHA 155 (489)
Q Consensus 109 pkr~lviiNP~sG----~~~a~~~~~~~v---~p~l~~a~i~~~v~~T~~~--------------------------~ha 155 (489)
+||++|++-...+ .++.--.|..++ ...|+++|+++++.-.+.. .+-
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~ 88 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFM 88 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHH
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHH
Confidence 5788888776321 122112233332 3568889999988753221 011
Q ss_pred HHHHH------HhhcCCCceEEEEcCCChHH-----HHHHHhhcCcCccccCCCcEEEecC
Q 011290 156 KEIVK------VLDLSKYDGIVCVSGDGILV-----EVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 156 ~el~~------~~~~~~~d~IV~vGGDGtl~-----EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
..+.. +++...||.|++.||-|+.. +-+..++.+.. ....+|+.|=.
T Consensus 89 ~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~---~~gk~iaaIC~ 146 (247)
T 3n7t_A 89 EKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIY---KRGGVIGAVCH 146 (247)
T ss_dssp HHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHH---HTTCEEEEETT
T ss_pred HHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHH---HcCCEEEEECh
Confidence 12222 22235799999999999842 22222222211 12568888877
No 47
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=61.99 E-value=37 Score=31.71 Aligned_cols=89 Identities=12% Similarity=0.185 Sum_probs=53.8
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++.+.+.|++...+. .--.. +.+-++..+++.|..+.+..+.. .....++++.+...+.|+||+.+.+.. .+.+..
T Consensus 14 ~~s~~Igvi~~~~~~-~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~ 90 (289)
T 2fep_A 14 KKTTTVGVIIPDISS-IFYSE-LARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAE 90 (289)
T ss_dssp --CCEEEEEESCTTS-HHHHH-HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHH
T ss_pred CCCCeEEEEeCCCCC-chHHH-HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHH
Confidence 456677777743221 11122 22456777888898887776653 223345666666678999999987755 455665
Q ss_pred hhcCcCccccCCCcEEEecC
Q 011290 186 LLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~ 205 (489)
+... .+|+-.+-.
T Consensus 91 l~~~-------~iPvV~~~~ 103 (289)
T 2fep_A 91 FKRS-------PVPIVLAAS 103 (289)
T ss_dssp HHHS-------SSCEEEESC
T ss_pred HHhc-------CCCEEEEcc
Confidence 5432 677766644
No 48
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=61.79 E-value=49 Score=29.44 Aligned_cols=74 Identities=7% Similarity=0.089 Sum_probs=53.5
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcCCCce-EEEEcCCChHHHHHHHh
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGL 186 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~~~d~-IV~vGGDGtl~EVvnGL 186 (489)
++.||. |+..-..+. ++....|+..|++|++... ..+.+..++++++...++++ |++.||.|-|--|+-++
T Consensus 14 ~V~Iim----GS~SD~~v~-~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~~ 88 (173)
T 4grd_A 14 LVGVLM----GSSSDWDVM-KHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAAK 88 (173)
T ss_dssp SEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHHH
T ss_pred eEEEEe----CcHhHHHHH-HHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhheec
Confidence 466665 333334333 6788899999999998765 23455678888887667764 56679999999999998
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
...
T Consensus 89 t~~ 91 (173)
T 4grd_A 89 TTV 91 (173)
T ss_dssp CCS
T ss_pred CCC
Confidence 753
No 49
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=61.44 E-value=25 Score=32.72 Aligned_cols=89 Identities=13% Similarity=0.216 Sum_probs=57.3
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++.+.+.|++...+.. --..+ .+-++..+++.|+++.+..+.. .....++++.+...++|+||+.+.+. ..+.+..
T Consensus 6 ~~~~~Igvv~~~~~~~-~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~ 82 (291)
T 3egc_A 6 KRSNVVGLIVSDIENV-FFAEV-ASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRT 82 (291)
T ss_dssp -CCCEEEEEESCTTSH-HHHHH-HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHH
T ss_pred CCCcEEEEEECCCcch-HHHHH-HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHH
Confidence 4566777777443321 11222 3567788888999988887754 33344566777667899999999887 4455555
Q ss_pred hhcCcCccccCCCcEEEecC
Q 011290 186 LLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~ 205 (489)
+... .+|+-.+-.
T Consensus 83 ~~~~-------~iPvV~~~~ 95 (291)
T 3egc_A 83 ELPK-------TFPIVAVNR 95 (291)
T ss_dssp SSCT-------TSCEEEESS
T ss_pred hhcc-------CCCEEEEec
Confidence 5443 678777655
No 50
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=60.36 E-value=21 Score=27.62 Aligned_cols=59 Identities=20% Similarity=0.341 Sum_probs=39.4
Q ss_pred HHHHhhhhc-CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHh
Q 011290 98 KLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL 162 (489)
Q Consensus 98 ~l~~~~~~~-~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~ 162 (489)
.|++.+.+. ..-|++.||+|-.|-. .. ++.+..-...|+.|++..++.+.+...-++++
T Consensus 39 dirdiiksmkdngkplvvfvngasqn--dv----nefqneakkegvsydvlkstdpeeltqrvref 98 (112)
T 2lnd_A 39 DIRDIIKSMKDNGKPLVVFVNGASQN--DV----NEFQNEAKKEGVSYDVLKSTDPEELTQRVREF 98 (112)
T ss_dssp HHHHHHHHHTTCCSCEEEEECSCCHH--HH----HHHHHHHHHHTCEEEEEECCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCeEEEEecCcccc--cH----HHHHHHHHhcCcchhhhccCCHHHHHHHHHHH
Confidence 345555544 4457799999965532 11 34445556679999999999998877666654
No 51
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=60.29 E-value=22 Score=32.00 Aligned_cols=69 Identities=9% Similarity=0.020 Sum_probs=44.3
Q ss_pred hhhcCCCcEEEEEEcCCC-------CCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhc---CCCceEE
Q 011290 103 IDSFGRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIV 171 (489)
Q Consensus 103 ~~~~~rpkr~lviiNP~s-------G~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~---~~~d~IV 171 (489)
+.-..+|+.+.+|||-.. ..+.+...=.+.++.+|+..|++++++.=-...+..+.++++.. ..+|.+|
T Consensus 37 Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~dlt~~em~~~l~~~~~~dh~~~dc~v 115 (179)
T 3p45_A 37 YKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFV 115 (179)
T ss_dssp CCCCSSBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTBSCEE
T ss_pred CCCCCCccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHhhhhcCCCCEEE
Confidence 333356677777777632 12233333346799999999999999887676777777766643 3456544
No 52
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=59.75 E-value=28 Score=32.02 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=52.4
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+.+.+.|++.-.+.. --..+ .+-++..+++.|+++.+..+.. .....++++.+...+.|+||+++.+.. .+.+.-+
T Consensus 2 ~s~~Ig~i~~~~~~~-~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l 78 (275)
T 3d8u_A 2 NAYSIALIIPSLFEK-ACAHF-LPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLL 78 (275)
T ss_dssp --CEEEEEESCSSCH-HHHHH-HHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHH
T ss_pred CceEEEEEeCCCccc-cHHHH-HHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHH
Confidence 345666776432211 11222 2456778888898877766643 333445667776678999999998765 3555555
Q ss_pred hcCcCccccCCCcEEEecC
Q 011290 187 LEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (489)
... .+|+-.+-.
T Consensus 79 ~~~-------~iPvV~~~~ 90 (275)
T 3d8u_A 79 EAS-------NTPVLEIAE 90 (275)
T ss_dssp HHH-------TCCEEEESS
T ss_pred HhC-------CCCEEEEee
Confidence 432 577766633
No 53
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=59.45 E-value=48 Score=30.62 Aligned_cols=89 Identities=15% Similarity=0.208 Sum_probs=51.4
Q ss_pred CCCcEEEEEEcC--CCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011290 107 GRPKRLYIFVNP--FGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (489)
Q Consensus 107 ~rpkr~lviiNP--~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVv 183 (489)
++.+++.+++.- .+.. --..+ .+-++..+++.|+++.+..+.. .....+.++.+...++|+||+.+.+.. .+.+
T Consensus 17 ~~~~~Ig~i~~~~~~~~~-~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~ 93 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGI-YFSEL-LFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-VDEI 93 (296)
T ss_dssp --CCEEEEEECGGGCC---CHHHH-HHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSC-HHHH
T ss_pred CCCceEEEEeCCcccCCc-hHHHH-HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCC-hHHH
Confidence 345667776632 2211 11222 2456777788898877765543 233445666666678999999998754 3455
Q ss_pred HHhhc-CcCccccCCCcEEEecC
Q 011290 184 NGLLE-REDWNDAIKVPLGVVPA 205 (489)
Q Consensus 184 nGL~~-~~~~~~~~~~plgiIP~ 205 (489)
..+.+ . .+|+-.+-.
T Consensus 94 ~~l~~~~-------~iPvV~~~~ 109 (296)
T 3brq_A 94 DDIIDAH-------SQPIMVLNR 109 (296)
T ss_dssp HHHHHTC-------SSCEEEESC
T ss_pred HHHHhcC-------CCCEEEEcc
Confidence 55543 2 677766643
No 54
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=58.87 E-value=30 Score=32.21 Aligned_cols=91 Identities=7% Similarity=0.035 Sum_probs=56.7
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhC-CCcEEEEEeC----ChhHHHHHHHHhhcCCCceEEEEcCCCh-HH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LV 180 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a-~i~~~v~~T~----~~~ha~el~~~~~~~~~d~IV~vGGDGt-l~ 180 (489)
++.+++.|++.......--..+ .+-++..+++. |..+.+..+. ......++++.+...++|+||+++.|.. ..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~-~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 84 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDV-QKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK 84 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHH-HHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH
T ss_pred CCcceEEEEecCCCCchHHHHH-HHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHH
Confidence 4556677776654122111222 24577777877 7888776652 3333445667776678999999998874 45
Q ss_pred HHHHHhhcCcCccccCCCcEEEecC
Q 011290 181 EVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 181 EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.++.+... .+|+-.+-.
T Consensus 85 ~~~~~~~~~-------~iPvV~~~~ 102 (304)
T 3gbv_A 85 GFTDALNEL-------GIPYIYIDS 102 (304)
T ss_dssp HHHHHHHHH-------TCCEEEESS
T ss_pred HHHHHHHHC-------CCeEEEEeC
Confidence 666666553 678777655
No 55
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=58.23 E-value=16 Score=35.94 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=36.3
Q ss_pred HHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 156 ~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.++++.+...+.|.++++|||||+.- ++.|.+. .+|+--||. ==-|++..
T Consensus 83 ~~~~~~l~~~~Id~L~~IGGdgS~~~-a~~l~~~-------~i~vigiPk-----TIDNDl~~ 132 (319)
T 4a3s_A 83 EKGIANLKKLGIEGLVVIGGDGSYMG-AKKLTEH-------GFPCVGVPG-----TIDNDIPG 132 (319)
T ss_dssp HHHHHHHHHHTCCEEEEEECTTHHHH-HHHHHHT-------TCCEEEEEE-----ETTCCCTT
T ss_pred HHHHHHHHHcCCCEEEEeCCcHHHHH-HHHHhcc-------CCcEEEeec-----cccCCCCC
Confidence 34455555557899999999999875 4445443 688999998 56688864
No 56
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=58.18 E-value=45 Score=32.09 Aligned_cols=68 Identities=10% Similarity=0.072 Sum_probs=45.1
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhH-HHHHHHHhhc--CCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDL--SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~h-a~el~~~~~~--~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+-++..+++.|+++.+..+..... ..+.++.+-. .++|+||+++.+....++++.+... .+|+-.+-.
T Consensus 24 ~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~-------giPvV~~~~ 94 (350)
T 3h75_A 24 QFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQGS-------GIKLFIVNS 94 (350)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTTS-------CCEEEEEES
T ss_pred HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHHhC-------CCcEEEEcC
Confidence 467777888899888886654322 2344555544 4899999997444566777766553 678776654
No 57
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=57.79 E-value=10 Score=42.76 Aligned_cols=59 Identities=15% Similarity=0.275 Sum_probs=40.2
Q ss_pred HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 154 ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
+..++++.+..-+.|++|++||||++. .++.|.+....-....+|+--||. ==-|++..
T Consensus 676 ~~~~i~~~l~~~~Id~LvvIGGdgS~~-~a~~L~~~~~~y~~~~I~vVGIPk-----TIDNDl~g 734 (989)
T 3opy_A 676 DMGTVAYYFQQYKFDGLIIIGGFEAFT-ALYELDAARAQYPIFNIPMCCLPA-----TVSNNVPG 734 (989)
T ss_dssp GHHHHHHHHHHHTCSEEEEEESHHHHH-HHHHHHHHTTTCGGGCSCEEEEEB-----CSSCCCTT
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHH-HHHHHHHHHhhCCCcCCcEEeccc-----cccCCCCC
Confidence 455666666666889999999999985 445554421111123689999999 66788864
No 58
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=57.78 E-value=15 Score=36.56 Aligned_cols=84 Identities=13% Similarity=0.081 Sum_probs=52.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe-C---ChhHHHHHHHHh---hcCCCceEEEEcCCChHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-T---QQLHAKEIVKVL---DLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T-~---~~~ha~el~~~~---~~~~~d~IV~vGGDGtl~E 181 (489)
.+|++|+.++... + +.+++...|+ .++. .++.- + ......++.+.+ ..++.|.||.+|| |.+.+
T Consensus 28 ~~kvliVtd~~v~-----~-~~~~v~~~L~-~~~~-~~~~~ge~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~D 98 (348)
T 1ujn_A 28 AGPAALLFDRRVE-----G-FAQEVAKALG-VRHL-LGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGG-GTLTD 98 (348)
T ss_dssp SSCEEEEEEGGGH-----H-HHHHHHHHHT-CCCE-EEECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHHH
T ss_pred CCEEEEEECCcHH-----H-HHHHHHHHhc-cCeE-EEECCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEECC-cHHHH
Confidence 4689999986532 2 5578888887 5555 33321 1 223344444433 3345699999998 78888
Q ss_pred HHHHhhcCcCccccCCCcEEEecC
Q 011290 182 VVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 182 VvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.-...... ...+|+..||.
T Consensus 99 ~ak~~A~~~----~rgip~i~IPT 118 (348)
T 1ujn_A 99 LGGFVAATY----LRGVAYLAFPT 118 (348)
T ss_dssp HHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHh----ccCCCEEEecC
Confidence 776655211 12689999999
No 59
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=57.70 E-value=49 Score=29.52 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=52.1
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcCCCc-eEEEEcCCChHHHHHHHh
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~~~d-~IV~vGGDGtl~EVvnGL 186 (489)
++.||. |+..-..+ .+++...|+..|++|++... ..+.+..++++++...+.+ .|++.|+.+-|--++-++
T Consensus 9 ~V~Iim----gS~SD~~v-~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 83 (174)
T 3lp6_A 9 RVGVIM----GSDSDWPV-MADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAA 83 (174)
T ss_dssp SEEEEE----SCGGGHHH-HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHH
T ss_pred eEEEEE----CcHHhHHH-HHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhc
Confidence 466664 33222333 36788899999999998775 3356677888877655566 466779999999999998
Q ss_pred hc
Q 011290 187 LE 188 (489)
Q Consensus 187 ~~ 188 (489)
..
T Consensus 84 t~ 85 (174)
T 3lp6_A 84 TP 85 (174)
T ss_dssp CS
T ss_pred cC
Confidence 65
No 60
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=57.61 E-value=44 Score=31.00 Aligned_cols=87 Identities=9% Similarity=0.182 Sum_probs=51.8
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++.+.+.|++. .....--.. +.+-++..+++.|+++.+..+... ....++++.+...++|+||+++.+.. .+.+..
T Consensus 6 ~~~~~Igvi~~-~~~~~~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 82 (285)
T 3c3k_A 6 AKTGMLLVMVS-NIANPFCAA-VVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSE-LPELQN 82 (285)
T ss_dssp -CCCEEEEEES-CTTSHHHHH-HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHHH
T ss_pred CCCCEEEEEeC-CCCCchHHH-HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHH
Confidence 45566777764 322211122 224567778888998877766432 23345566666678999999987654 355555
Q ss_pred hhcCcCccccCCCcEEEec
Q 011290 186 LLEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiIP 204 (489)
|. . .+|+-.+=
T Consensus 83 l~-~-------~iPvV~~~ 93 (285)
T 3c3k_A 83 II-G-------AFPWVQCA 93 (285)
T ss_dssp HH-T-------TSSEEEES
T ss_pred Hh-c-------CCCEEEEc
Confidence 53 2 57766653
No 61
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=57.46 E-value=47 Score=30.73 Aligned_cols=87 Identities=11% Similarity=0.193 Sum_probs=56.5
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh----HHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI----LVEVVN 184 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt----l~EVvn 184 (489)
+.+.|++...+..-- ..++ +-++..+++.|+++.+..+.. .....++++.+...++|+||+.+.|.. ..+++.
T Consensus 16 ~~Igvi~~~~~~~~~-~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 93 (298)
T 3tb6_A 16 KTIGVLTTYISDYIF-PSII-RGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYL 93 (298)
T ss_dssp CEEEEEESCSSSTTH-HHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHH
T ss_pred ceEEEEeCCCCchHH-HHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHH
Confidence 567776654333221 2233 567888888999988887653 333445667776679999999998863 335666
Q ss_pred HhhcCcCccccCCCcEEEecC
Q 011290 185 GLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~ 205 (489)
.+... .+|+-.+=.
T Consensus 94 ~~~~~-------~iPvV~~~~ 107 (298)
T 3tb6_A 94 NLEKN-------GIPFAMINA 107 (298)
T ss_dssp HHHHT-------TCCEEEESS
T ss_pred HHHhc-------CCCEEEEec
Confidence 66554 678776644
No 62
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=56.97 E-value=62 Score=28.84 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=52.4
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcCCCc-eEEEEcCCChHHHHHHHh
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~~~d-~IV~vGGDGtl~EVvnGL 186 (489)
++.||. |+..-..+ .++....|+..|++|++... ..+.+..++++++...+.+ .|++.|+.+-|--++-++
T Consensus 14 ~V~Iim----GS~SD~~v-~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 88 (174)
T 3kuu_A 14 KIAIVM----GSKSDWAT-MQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAK 88 (174)
T ss_dssp CEEEEE----SSGGGHHH-HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHT
T ss_pred cEEEEE----CcHHHHHH-HHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhc
Confidence 566665 33223333 36788899999999998775 3456677888887666666 456679999999999988
Q ss_pred hc
Q 011290 187 LE 188 (489)
Q Consensus 187 ~~ 188 (489)
..
T Consensus 89 t~ 90 (174)
T 3kuu_A 89 TL 90 (174)
T ss_dssp CS
T ss_pred cC
Confidence 65
No 63
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=56.43 E-value=63 Score=28.58 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=51.4
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHhhcCCCce-EEEEcCCChHHHHHHHh
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGL 186 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~~~~~~d~-IV~vGGDGtl~EVvnGL 186 (489)
++.||. |...-..+ .+++...|+..|+.|++.... .+....++++++...+.++ |++.|+.+-|--++-++
T Consensus 7 ~V~Iim----gS~SD~~v-~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~ 81 (166)
T 3oow_A 7 QVGVIM----GSKSDWST-MKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAK 81 (166)
T ss_dssp EEEEEE----SSGGGHHH-HHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHT
T ss_pred eEEEEE----CcHHhHHH-HHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhc
Confidence 466664 33223333 367888999999999987753 3455777888876556664 55679999999999988
Q ss_pred hc
Q 011290 187 LE 188 (489)
Q Consensus 187 ~~ 188 (489)
..
T Consensus 82 t~ 83 (166)
T 3oow_A 82 TT 83 (166)
T ss_dssp CS
T ss_pred cC
Confidence 65
No 64
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=56.15 E-value=29 Score=32.83 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=49.9
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+.-+|+.+|.+|... .+.... +..+..++++|+++.........+..+.++++. .++|+|+| ..|.+.--++..+
T Consensus 138 Pg~~~I~~i~~~~~~--~~~~r~-~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~-~~~dai~~-~~D~~a~g~~~~l 212 (302)
T 2qh8_A 138 PNVKSIGVVYNPGEA--NAVSLM-ELLKLSAAKHGIKLVEATALKSADVQSATQAIA-EKSDVIYA-LIDNTVASAIEGM 212 (302)
T ss_dssp TTCCEEEEEECTTCH--HHHHHH-HHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHG-GGCSEEEE-CSCHHHHTTHHHH
T ss_pred CCCcEEEEEecCCCc--chHHHH-HHHHHHHHHcCCEEEEEecCChHHHHHHHHHHh-ccCCEEEE-CCcHhHHHHHHHH
Confidence 456899999998542 233333 467788899999877665555566777777764 47887766 5787665444444
No 65
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=55.99 E-value=3.2 Score=45.22 Aligned_cols=86 Identities=12% Similarity=0.184 Sum_probs=52.8
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCC-C-----------
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD-G----------- 177 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGD-G----------- 177 (489)
+++.|++.+.-|-.. .+ + ..+...|+++|+.++++-.+....+.......+...||+||+.||- |
T Consensus 530 ~kVaIL~a~~dGfe~-~E-~-~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~ 606 (688)
T 2iuf_A 530 LKVGLLASVNKPASI-AQ-G-AKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEP 606 (688)
T ss_dssp CEEEEECCTTCHHHH-HH-H-HHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCC
T ss_pred CEEEEEecCCCCCcH-HH-H-HHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccccccc
Confidence 578888774333222 11 2 3688899999999988876532211111122233579999999993 3
Q ss_pred -------------hHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 178 -------------ILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 178 -------------tl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
.+.+++...... .-|||.|-+
T Consensus 607 ~~~~~~~~L~~~~~~~~~v~~~~~~-------gKpIaAIc~ 640 (688)
T 2iuf_A 607 SAGSGASTLYPAGRPLNILLDAFRF-------GKTVGALGS 640 (688)
T ss_dssp CTTSCCCSSSCTTHHHHHHHHHHHH-------TCEEEEEGG
T ss_pred ccccchhhcccChHHHHHHHHHHHc-------CCEEEEECc
Confidence 245555555443 568998887
No 66
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=55.76 E-value=42 Score=31.07 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=52.1
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLL 187 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~ 187 (489)
+++.+++ |.....--..+ .+-++..+++.|+++.+..+.. .....+.++.+...++|+||+.+.+.. +.+.+..+.
T Consensus 3 ~~Ig~i~-~~~~~~~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~ 80 (290)
T 2fn9_A 3 GKMAIVI-STLNNPWFVVL-AETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAK 80 (290)
T ss_dssp CEEEEEE-SCSSSHHHHHH-HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHH
T ss_pred eEEEEEe-CCCCChHHHHH-HHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHH
Confidence 4555665 33222111222 2456777888899887776643 333345666666678999999987754 345566554
Q ss_pred cCcCccccCCCcEEEecC
Q 011290 188 EREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 188 ~~~~~~~~~~~plgiIP~ 205 (489)
+. .+|+-.+-.
T Consensus 81 ~~-------~iPvV~~~~ 91 (290)
T 2fn9_A 81 EA-------GIPVFCVDR 91 (290)
T ss_dssp HT-------TCCEEEESS
T ss_pred HC-------CCeEEEEec
Confidence 43 577766644
No 67
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=55.61 E-value=33 Score=33.41 Aligned_cols=79 Identities=11% Similarity=0.237 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhhhcCCC--cEEEEEEcCCC----CCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhh---
Q 011290 93 RLWCEKLRDFIDSFGRP--KRLYIFVNPFG----GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD--- 163 (489)
Q Consensus 93 ~~w~~~l~~~~~~~~rp--kr~lviiNP~s----G~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~--- 163 (489)
..|.++-.+.+....++ +|+.+|||-.. ....+...=.+.++..|+..|++++++.=-...+..+.++++.
T Consensus 41 ~~~~~~~~e~Y~m~~~~~~~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~~ 120 (302)
T 3e4c_A 41 RIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRP 120 (302)
T ss_dssp HHHHHHGGGBCCCCCTTTCCCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTCG
T ss_pred HHHHhccccccccCCCCCCccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHhhh
Confidence 33444444445433333 56666666542 1222222223679999999999998887666667777666653
Q ss_pred -cCCCceEE
Q 011290 164 -LSKYDGIV 171 (489)
Q Consensus 164 -~~~~d~IV 171 (489)
...+|.+|
T Consensus 121 dh~~~d~~v 129 (302)
T 3e4c_A 121 EHKTSDSTF 129 (302)
T ss_dssp GGGGCSCEE
T ss_pred ccCCCCEEE
Confidence 23466444
No 68
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=55.46 E-value=41 Score=29.61 Aligned_cols=66 Identities=14% Similarity=0.261 Sum_probs=42.5
Q ss_pred cCCCcEEEEEEcCC--------------CCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhc---CCCc
Q 011290 106 FGRPKRLYIFVNPF--------------GGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYD 168 (489)
Q Consensus 106 ~~rpkr~lviiNP~--------------sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~---~~~d 168 (489)
..+|+.+.+|||-. -..+.+...=.+.++.+|+..|++++++.=-...+..+.++++.. ..+|
T Consensus 19 ~~~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~dh~~~d 98 (164)
T 1qtn_A 19 KSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHSNMD 98 (164)
T ss_dssp CCSSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCTTCS
T ss_pred CCCCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhhccCCC
Confidence 34567787887752 112223233346799999999999998876666677776666532 3566
Q ss_pred eEE
Q 011290 169 GIV 171 (489)
Q Consensus 169 ~IV 171 (489)
.+|
T Consensus 99 c~v 101 (164)
T 1qtn_A 99 CFI 101 (164)
T ss_dssp CEE
T ss_pred EEE
Confidence 544
No 69
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=55.44 E-value=11 Score=37.41 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=47.6
Q ss_pred EEEEEEcCCCCCcc---ccccchHhHHHHHHhCCCcEEEEEeCC----------hhHHHHHHHHhhcCCCceEEEE-cCC
Q 011290 111 RLYIFVNPFGGKKI---ASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVCV-SGD 176 (489)
Q Consensus 111 r~lviiNP~sG~~~---a~~~~~~~v~p~l~~a~i~~~v~~T~~----------~~ha~el~~~~~~~~~d~IV~v-GGD 176 (489)
.-.-||.|.|+-.. ....+ +.....|+..|.++.+..+-. +..|.++.+.+.....|+|+|+ ||+
T Consensus 6 D~I~ivaPSs~~~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 84 (346)
T 4eys_A 6 STIGIVSLSSGIIGEDFVKHEV-DLGIQRLKDLGLNPIFLPHSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCAIGGD 84 (346)
T ss_dssp CEEEEECSSCCGGGSGGGHHHH-HHHHHHHHHTTCEEEECTTTTSCHHHHHHCHHHHHHHHHHHHHCTTCCEEEECCCCS
T ss_pred cEEEEEeCCCcccccccCHHHH-HHHHHHHHhCCCEEEECCchhccCCccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 34567899987531 12334 466778999998877653332 2345566666666778988887 899
Q ss_pred ChHHHHHHHh
Q 011290 177 GILVEVVNGL 186 (489)
Q Consensus 177 Gtl~EVvnGL 186 (489)
|+. +++..|
T Consensus 85 g~~-rlLp~L 93 (346)
T 4eys_A 85 DTY-RLLPYL 93 (346)
T ss_dssp CGG-GGHHHH
T ss_pred CHH-HHHHHh
Confidence 974 555555
No 70
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=55.24 E-value=16 Score=33.55 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=33.2
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGD 176 (489)
+++.+| |.+.......-|.+.++..|+..|+++.+..... .+..++.+.+. +.|+|++-||+
T Consensus 28 ~~i~~I--p~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~-~~~~~~~~~l~--~ad~I~l~GG~ 89 (206)
T 3l4e_A 28 KTVTFI--PTASTVEEVTFYVEAGKKALESLGLLVEELDIAT-ESLGEITTKLR--KNDFIYVTGGN 89 (206)
T ss_dssp CEEEEE--CGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT-SCHHHHHHHHH--HSSEEEECCSC
T ss_pred CEEEEE--CCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CChHHHHHHHH--hCCEEEECCCC
Confidence 555544 4333211112355689999999999765543222 12233333433 46888876654
No 71
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=54.81 E-value=27 Score=32.68 Aligned_cols=89 Identities=17% Similarity=0.098 Sum_probs=52.4
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHH---HHHHhhcCCCceEEEEcCCChHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKE---IVKVLDLSKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~e---l~~~~~~~~~d~IV~vGGDGtl~EV 182 (489)
++.+.+.|++ |.....--.. +.+-++..+++.|.++.+..+.. .....+ +++.+...++|+||+++.+.. .+.
T Consensus 6 ~~~~~Ig~i~-~~~~~~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~ 82 (290)
T 2rgy_A 6 QQLGIIGLFV-PTFFGSYYGT-ILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH-DED 82 (290)
T ss_dssp --CCEEEEEC-SCSCSHHHHH-HHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHH
T ss_pred CCCCeEEEEe-CCCCCchHHH-HHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHH
Confidence 3445566665 4332211122 22456777888898877765543 223334 666666678999999998876 456
Q ss_pred HHHhhcCcCccccCCCcEEEecC
Q 011290 183 VNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 183 vnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+..+... .+|+-.+-.
T Consensus 83 ~~~l~~~-------~iPvV~~~~ 98 (290)
T 2rgy_A 83 LDELHRM-------HPKMVFLNR 98 (290)
T ss_dssp HHHHHHH-------CSSEEEESS
T ss_pred HHHHhhc-------CCCEEEEcc
Confidence 6655432 577766644
No 72
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=54.80 E-value=29 Score=30.05 Aligned_cols=60 Identities=8% Similarity=0.160 Sum_probs=39.3
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG 174 (489)
++++|+|--. .|...++- +.+..-|...|++++++......+..++...+. ++|.||+..
T Consensus 5 ~kv~IvY~S~--~GnT~~iA-~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~d~ii~Gs 64 (159)
T 3fni_A 5 TSIGVFYVSE--YGYSDRLA-QAIINGITKTGVGVDVVDLGAAVDLQELRELVG--RCTGLVIGM 64 (159)
T ss_dssp CEEEEEECTT--STTHHHHH-HHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--TEEEEEEEC
T ss_pred CEEEEEEECC--ChHHHHHH-HHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHH--hCCEEEEEc
Confidence 5788887544 44555544 678888888999888876554314455555543 688887764
No 73
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=54.66 E-value=15 Score=41.37 Aligned_cols=58 Identities=19% Similarity=0.322 Sum_probs=39.3
Q ss_pred HHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 155 a~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
..++++.+..-+.|++|++||||++.- ++.|.+.........+|+--||. ==-|++..
T Consensus 651 ~~~i~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~~~~~~~~~i~vVGIPk-----TIDNDl~g 708 (941)
T 3opy_B 651 IGMIAYFFEKYGFDGLILVGGFEAFIS-LHQLERARINYPSLRIPLVLIPA-----TISNNVPG 708 (941)
T ss_dssp HHHHHHHHHHTTCSEEEEEESHHHHHH-HHHHHHGGGTCGGGCSCEEEEEB-----CSSCCCTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHH-HHHHHHHHHhcCccCCcEEeeec-----cccCCCCC
Confidence 345667776678999999999999754 34444321111123699999999 66788864
No 74
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=54.61 E-value=49 Score=31.46 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=51.6
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhC-CCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVV 183 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a-~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVv 183 (489)
++...+.|++. .+ ..--.. +.+-++..+++. |+++.+..+.. .....+.++.+...++|+||+.+.+.. +.+.+
T Consensus 4 ~~~~~Igvi~~-~~-~~~~~~-~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 4 TPHFRIGVAQC-SD-DSWRHK-MNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp --CCEEEEEES-CC-SHHHHH-HHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHH
T ss_pred CCCeEEEEEec-CC-CHHHHH-HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 34566777664 31 111111 223456666677 88887776643 333345666666678999999988764 34556
Q ss_pred HHhhcCcCccccCCCcEEEecC
Q 011290 184 NGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 184 nGL~~~~~~~~~~~~plgiIP~ 205 (489)
..+... .+|+-.+-.
T Consensus 81 ~~~~~~-------~iPvV~~~~ 95 (325)
T 2x7x_A 81 EEAYQK-------GIPVILVDR 95 (325)
T ss_dssp HHHHHT-------TCCEEEESS
T ss_pred HHHHHC-------CCeEEEeCC
Confidence 655443 678776644
No 75
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=54.11 E-value=22 Score=31.82 Aligned_cols=68 Identities=10% Similarity=0.185 Sum_probs=41.2
Q ss_pred cEEEEEEcCCC----CCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhh----cCCCc-eEEEEcCCC
Q 011290 110 KRLYIFVNPFG----GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD----LSKYD-GIVCVSGDG 177 (489)
Q Consensus 110 kr~lviiNP~s----G~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~----~~~~d-~IV~vGGDG 177 (489)
+++.+|||-.. ....+...=.+.++.+|+..|+++++..=-...+..+.++++. ...+| .+++.-|-|
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG 119 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHG 119 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTCGGGGGCSCEEEEEESCB
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEecCC
Confidence 56666665542 1222222234679999999999998887666667777666653 23556 344444544
No 76
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=54.11 E-value=38 Score=32.55 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=53.8
Q ss_pred CcEEEEEEc--CCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVN--PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiN--P~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+.++.+++. +.+.+.--..++ +-++...++.|+++.+..+.......+.++.+...++|+||++|..- .+.+..+
T Consensus 4 ~~~Ig~v~~~g~~~d~~f~~~~~-~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~dgIi~~~~~~--~~~~~~~ 80 (318)
T 2fqx_A 4 DFVVGMVTDSGDIDDKSFNQQVW-EGISRFAQENNAKCKYVTASTDAEYVPSLSAFADENMGLVVACGSFL--VEAVIET 80 (318)
T ss_dssp CCEEEEEESSSCTTSSSHHHHHH-HHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHHTTCSEEEEESTTT--HHHHHHH
T ss_pred CcEEEEEEcCCCCCCccHHHHHH-HHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEECChhH--HHHHHHH
Confidence 456778875 433221112233 35677788889988888776555555667777667899999997542 2334334
Q ss_pred hcCcCccccCCCcEEEecC
Q 011290 187 LEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (489)
... ...+|+.++=.
T Consensus 81 a~~-----~p~~p~v~id~ 94 (318)
T 2fqx_A 81 SAR-----FPKQKFLVIDA 94 (318)
T ss_dssp HHH-----CTTSCEEEESS
T ss_pred HHH-----CCCCEEEEEcC
Confidence 321 12577777744
No 77
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=53.88 E-value=37 Score=31.55 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=26.7
Q ss_pred CCCceEEEEcCCChHHH-----HHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 165 SKYDGIVCVSGDGILVE-----VVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 165 ~~~d~IV~vGGDGtl~E-----VvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
..||.|++.||-|.... -+..++.+-. ....+|+-|=. |+. .||.
T Consensus 97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~---~~gk~vaaIC~-----G~~-~La~ 146 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEIY---ANGGVVAAVCH-----GPA-IFDG 146 (243)
T ss_dssp GGEEEEEECCSTTHHHHGGGCHHHHHHHHHHH---HTTCEEEEETT-----GGG-GGTT
T ss_pred hhCcEEEECCCCCchhhcccCHHHHHHHHHHH---HcCCEEEEECC-----CHH-HHHh
Confidence 46999999999886422 2222222210 12568888877 765 4544
No 78
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=53.43 E-value=54 Score=30.54 Aligned_cols=67 Identities=13% Similarity=0.050 Sum_probs=46.9
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChH-HHHHHHhhcCcCccccCCCcEEEec
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGLLEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl-~EVvnGL~~~~~~~~~~~~plgiIP 204 (489)
+-++..+++.|+++.+..+.......+.++.+...++|+||+++-|... .+.+..+.+. .+|+-.+=
T Consensus 22 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~-------~iPvV~~~ 89 (306)
T 8abp_A 22 KFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGY-------DMKVIAVD 89 (306)
T ss_dssp HHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHHT-------TCEEEEES
T ss_pred HHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHC-------CCcEEEeC
Confidence 4567777888888877766555545566677766789999999988753 4456655553 67876664
No 79
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=53.34 E-value=41 Score=29.01 Aligned_cols=64 Identities=9% Similarity=0.118 Sum_probs=41.7
Q ss_pred CCCcEEEEEEcCCC-------CCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhc---CCCceE
Q 011290 107 GRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGI 170 (489)
Q Consensus 107 ~rpkr~lviiNP~s-------G~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~---~~~d~I 170 (489)
.+|+.+.+|||-.. ..+.+...=.+.++.+|+..|++++++.=-...+..+.++++.. ..+|.+
T Consensus 13 ~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~dh~~~dc~ 86 (146)
T 2dko_A 13 YPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSF 86 (146)
T ss_dssp SSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCTTEEEE
T ss_pred CCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHHhhcCCCCeE
Confidence 45677888887641 12233333346799999999999998877777777776666532 345643
No 80
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=53.28 E-value=24 Score=36.09 Aligned_cols=60 Identities=8% Similarity=0.003 Sum_probs=40.0
Q ss_pred hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 152 QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 152 ~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
...-.++++.+...+.|.+|++|||||+.-+ +-|.+.- .+....+++--||. ==-|+++.
T Consensus 90 ~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A-~~L~~~~-~~~g~~i~vIGiPk-----TIDNDl~~ 149 (419)
T 3hno_A 90 RREYERLIEVFKAHDIGYFFYNGGGDSADTC-LKVSQLS-GTLGYPIQAIHVPK-----TVDNDLPI 149 (419)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEESHHHHHHH-HHHHHHH-HHTTCCCEEEEEEC-----CTTCCCSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHH-HHHHHHH-HHhCCCccEEEecc-----cccCCCcC
Confidence 4455566777776788999999999998643 3343210 00113688888998 56788864
No 81
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=52.97 E-value=64 Score=29.67 Aligned_cols=89 Identities=9% Similarity=0.127 Sum_probs=50.2
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+.+++.+++ |.....--.. +.+-++..+++.|+++.+..+.. .....++++.+...++|+||+.+.+.+ .+++..|
T Consensus 6 ~~~~Ig~i~-~~~~~~~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l 82 (289)
T 1dbq_A 6 HTKSIGLLA-TSSEAAYFAE-IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP-EPLLAML 82 (289)
T ss_dssp --CEEEEEE-SCTTSHHHHH-HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC-HHHHHHH
T ss_pred CCCEEEEEe-CCCCChHHHH-HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC-HHHHHHH
Confidence 445666666 3322211122 22456777778898887766543 233345666666678999999998864 2344434
Q ss_pred hcCcCccccCCCcEEEecC
Q 011290 187 LEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (489)
... ..+|+-.+-.
T Consensus 83 ~~~------~~iPvV~~~~ 95 (289)
T 1dbq_A 83 EEY------RHIPMVVMDW 95 (289)
T ss_dssp HHT------TTSCEEEEEC
T ss_pred Hhc------cCCCEEEEcc
Confidence 321 2577666543
No 82
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=52.72 E-value=27 Score=32.70 Aligned_cols=90 Identities=7% Similarity=0.087 Sum_probs=56.5
Q ss_pred CCCcEEEEEEcCCC---CCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011290 107 GRPKRLYIFVNPFG---GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (489)
Q Consensus 107 ~rpkr~lviiNP~s---G~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVv 183 (489)
++.+.+.|++.... ...--..+ .+-++..+++.|..+.+..+.......++.+.+...+.|+||+++.+..- +.+
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~ 81 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEM-ISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-FRL 81 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHH-HHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC-HHH
T ss_pred CccceEEEEecCCCccccChhHHHH-HHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh-HHH
Confidence 45566777774211 11111122 34577788889999888888754445566677666789999999887543 566
Q ss_pred HHhhcCcCccccCCCcEEEecC
Q 011290 184 NGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 184 nGL~~~~~~~~~~~~plgiIP~ 205 (489)
..|... .+|+-.+=.
T Consensus 82 ~~l~~~-------~iPvV~~~~ 96 (294)
T 3qk7_A 82 QYLQKQ-------NFPFLALGR 96 (294)
T ss_dssp HHHHHT-------TCCEEEESC
T ss_pred HHHHhC-------CCCEEEECC
Confidence 655553 677766644
No 83
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=52.26 E-value=52 Score=30.60 Aligned_cols=87 Identities=10% Similarity=0.117 Sum_probs=55.6
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
++.+.+.|++ ..+..- -.. +.+-++..+++.|+.+.+..+.......+.++.+...++|+||+++.|..- +.+..+
T Consensus 10 ~~~~~Igvi~-~~~~~~-~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~~ 85 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQQPF-HGD-LVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDT-DELGAL 85 (289)
T ss_dssp ---CEEEEEE-ETTCHH-HHH-HHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCH-HHHHHH
T ss_pred CCCCEEEEEE-ecCCch-HHH-HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHH
Confidence 4566788888 433221 122 235677888889999888887764445566677766789999999988764 555544
Q ss_pred hcCcCccccCCCcEEEecC
Q 011290 187 LEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (489)
.. .+|+-.+=.
T Consensus 86 ~~--------~iPvV~i~~ 96 (289)
T 3k9c_A 86 AD--------RVPALVVAR 96 (289)
T ss_dssp HT--------TSCEEEESS
T ss_pred Hc--------CCCEEEEcC
Confidence 22 467666644
No 84
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=51.92 E-value=18 Score=39.89 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=37.5
Q ss_pred HHHHHHhhcCCCceEEEEcCCChHHHHH----------HHhhcC-----cCccccCCCcEEEecCcCCCCccccccee
Q 011290 156 KEIVKVLDLSKYDGIVCVSGDGILVEVV----------NGLLER-----EDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 156 ~el~~~~~~~~~d~IV~vGGDGtl~EVv----------nGL~~~-----~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.++++.+...+.|.+|++|||||+.-+. .-|.+. ........+++--||. ==-|+++.
T Consensus 99 ~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPk-----TIDNDl~g 171 (762)
T 3o8l_A 99 LRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVG-----SIDNDFCG 171 (762)
T ss_dssp HHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEB-----CTTCCCSS
T ss_pred HHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeec-----CcccCCCC
Confidence 3555666656789999999999987432 222221 1111223688888998 55688874
No 85
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=51.77 E-value=15 Score=40.64 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=39.0
Q ss_pred HHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 155 a~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
..++++.+...+.|.+|++||||++.- ++.|.+.........+|+--||. ==-|++..
T Consensus 473 ~~~~~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~~~~~~~~~i~vvgiPk-----TIDNDl~g 530 (766)
T 3o8o_B 473 LGMIAYYFQKYEFDGLIIVGGFEAFES-LHQLERARESYPAFRIPMVLIPA-----TLSNNVPG 530 (766)
T ss_dssp HHHHHHHHHHHTCSEEEEEESHHHHHH-HHHHHTTTTTCGGGCSCCCEEEB-----CTTCCCSS
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHH-HHHHHHHHHhcCccCCcEEeecc-----ccccCCCC
Confidence 345666666567899999999999854 44454421111123688889999 66788865
No 86
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=51.62 E-value=1e+02 Score=29.44 Aligned_cols=86 Identities=13% Similarity=0.150 Sum_probs=53.9
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+.+.+.+++.-.+..- -..+ .+-++..+++.|+.+.+..+.. .....++++.+...++|+||+++-+..- +.+..|
T Consensus 67 ~~~~Ig~i~~~~~~~~-~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l 143 (344)
T 3kjx_A 67 RVNLVAVIIPSLSNMV-FPEV-LTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAML 143 (344)
T ss_dssp CCSEEEEEESCSSSSS-HHHH-HHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHH
T ss_pred CCCEEEEEeCCCCcHH-HHHH-HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHH
Confidence 4556777764333221 1222 3467778888899887777654 3334456667666789999999887654 555555
Q ss_pred hcCcCccccCCCcEEEe
Q 011290 187 LEREDWNDAIKVPLGVV 203 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiI 203 (489)
... .+|+-.+
T Consensus 144 ~~~-------~iPvV~i 153 (344)
T 3kjx_A 144 DAA-------GIPVVEI 153 (344)
T ss_dssp HHC-------SSCEEEE
T ss_pred HhC-------CCCEEEE
Confidence 443 6787666
No 87
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=51.58 E-value=20 Score=28.21 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=26.8
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhh
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~ 163 (489)
|-++++.+|+..|++|+.+.-+....+.+.+.++.
T Consensus 16 ~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~ 50 (92)
T 2lqo_A 16 YCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVN 50 (92)
T ss_dssp SHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHc
Confidence 55789999999999998887766566666666553
No 88
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=51.44 E-value=94 Score=29.54 Aligned_cols=90 Identities=14% Similarity=0.133 Sum_probs=55.0
Q ss_pred CCCcEEEEEEcC--CCCCccccccchHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011290 107 GRPKRLYIFVNP--FGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (489)
Q Consensus 107 ~rpkr~lviiNP--~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl~EVv 183 (489)
++.+.+.|++.. .+..- -..+ .+-++..+++.|+.+.+..+... ....++++.+...++|+||+++.+..-.++.
T Consensus 59 ~~~~~Igvi~~~~~~~~~~-~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 136 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIY-FSEL-LFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEID 136 (338)
T ss_dssp -CCSEEEEEECTTTTSTTH-HHHH-HHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHH
T ss_pred CCCCEEEEEecCCcccChh-HHHH-HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHH
Confidence 455677777754 22221 1222 35677888889998888776543 3334466777667899999999887654444
Q ss_pred HHhhcCcCccccCCCcEEEecC
Q 011290 184 NGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 184 nGL~~~~~~~~~~~~plgiIP~ 205 (489)
.-+-.. .+|+-.+=.
T Consensus 137 ~~~~~~-------~iPvV~~~~ 151 (338)
T 3dbi_A 137 DIIDAH-------SQPIMVLNR 151 (338)
T ss_dssp HHHHHC-------SSCEEEESS
T ss_pred HHHHcC-------CCCEEEEcC
Confidence 433322 577666644
No 89
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=51.14 E-value=20 Score=33.26 Aligned_cols=45 Identities=9% Similarity=0.001 Sum_probs=27.3
Q ss_pred cCCCcEEEEEE-cCCCC--CccccccchHhHHHHHHhCCCcEEEEEeC
Q 011290 106 FGRPKRLYIFV-NPFGG--KKIASKIFLDDVKPLLEDANIQFTVQETT 150 (489)
Q Consensus 106 ~~rpkr~lvii-NP~sG--~~~a~~~~~~~v~p~l~~a~i~~~v~~T~ 150 (489)
...+++++||. .|.-+ ++...+.+.+.+...++.+|.+++++.-.
T Consensus 22 ~~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~ 69 (218)
T 3rpe_A 22 SNAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVD 69 (218)
T ss_dssp --CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 34456777666 77632 12222234467888888899988877653
No 90
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=51.06 E-value=18 Score=35.39 Aligned_cols=65 Identities=12% Similarity=0.320 Sum_probs=44.5
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe----------CChhHHHHHHHHhhcCCCceEEEE-cCCCh
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----------TQQLHAKEIVKVLDLSKYDGIVCV-SGDGI 178 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T----------~~~~ha~el~~~~~~~~~d~IV~v-GGDGt 178 (489)
.-.-||.|.|+-. ...+ +.....|+..|.++.+-.+ ..+..|.++.+.+.....|+|+|+ ||+|+
T Consensus 18 d~I~ivaPSs~~~--~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyga 93 (311)
T 1zl0_A 18 GRVALIAPASAIA--TDVL-EATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGYGC 93 (311)
T ss_dssp SEEEEECCSBCCC--HHHH-HHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSSCG
T ss_pred CEEEEEeCCCCCC--HHHH-HHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccCCcCH
Confidence 3467889988764 3335 5778889999988775322 233446677777766677877765 88986
No 91
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=51.03 E-value=36 Score=31.52 Aligned_cols=89 Identities=11% Similarity=0.201 Sum_probs=54.4
Q ss_pred CCCcEEEEEEcC-----CCCCccccccchHhHHHHHHhCCCcEEEEEeCChhH-HHHHHHHhhcCCCceEEEEcCCChHH
Q 011290 107 GRPKRLYIFVNP-----FGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 107 ~rpkr~lviiNP-----~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~h-a~el~~~~~~~~~d~IV~vGGDGtl~ 180 (489)
++.+++.|++.. .+.. --..+ .+-++..+++.|..+.+..+..... ..++.+.+...++|+||+++.+.. .
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~-~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-~ 82 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNP-FFPEV-IRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN-D 82 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTST-HHHHH-HHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-C
T ss_pred CCCCEEEEEecCCccccccCH-HHHHH-HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-h
Confidence 455666666654 2222 11222 3467778888998887766654333 234566666678999999887754 3
Q ss_pred HHHHHhhcCcCccccCCCcEEEecC
Q 011290 181 EVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 181 EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.+..+... .+|+-.+=.
T Consensus 83 ~~~~~l~~~-------~iPvV~~~~ 100 (292)
T 3k4h_A 83 RIIQYLHEQ-------NFPFVLIGK 100 (292)
T ss_dssp HHHHHHHHT-------TCCEEEESC
T ss_pred HHHHHHHHC-------CCCEEEECC
Confidence 566655544 678766644
No 92
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=50.67 E-value=80 Score=29.30 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=46.3
Q ss_pred HhHHHHHHhCCC-cEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANI-QFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i-~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+-++..+++.|. ++.+..+.. .....++++.+...++|+||+.+.|.. ..+.+..+... .+|+-.+-.
T Consensus 22 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~-------~iPvV~~~~ 92 (309)
T 2fvy_A 22 KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ-------NVPVVFFNK 92 (309)
T ss_dssp HHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHTT-------TCCEEEESS
T ss_pred HHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHHHC-------CCcEEEecC
Confidence 456777888887 777766643 333445667766678999999998875 45667666543 678766644
No 93
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=50.52 E-value=43 Score=31.24 Aligned_cols=89 Identities=9% Similarity=0.128 Sum_probs=54.4
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE-eC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVN 184 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~-T~-~~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvn 184 (489)
+.+++.+++...+. .--..++ +-++..+++.|+++.+.. +. ......+.++.+...++|+||+.+.|.. +.+.+.
T Consensus 3 ~~~~I~~i~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 3 LNETYMMITFQSGM-DYWKRCL-KGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp --CEEEEEESSTTS-THHHHHH-HHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHH
T ss_pred CCceEEEEEccCCC-hHHHHHH-HHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 34566666544333 2222233 567788888898887743 32 2233345566665578999999998865 456677
Q ss_pred HhhcCcCccccCCCcEEEecC
Q 011290 185 GLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~ 205 (489)
.+... .+|+-.+-.
T Consensus 81 ~~~~~-------~iPvV~~~~ 94 (305)
T 3g1w_A 81 KAVDA-------GIPIVLFDS 94 (305)
T ss_dssp HHHHT-------TCCEEEESS
T ss_pred HHHHC-------CCcEEEECC
Confidence 66654 678777655
No 94
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=50.52 E-value=46 Score=31.67 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=54.3
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+.-|++.|++||...... ...+.++..+...|+++.........+..+.++.+. .+.|.|+ +..|+++......+
T Consensus 138 P~~k~vgvi~~~~~~~s~---~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~-~~~d~i~-~~~d~~~~~~~~~i 212 (302)
T 3lkv_A 138 PNVKSIGVVYNPGEANAV---SLMELLKLSAAKHGIKLVEATALKSADVQSATQAIA-EKSDVIY-ALIDNTVASAIEGM 212 (302)
T ss_dssp TTCCEEEEEECTTCHHHH---HHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHH-TTCSEEE-ECSCHHHHHTHHHH
T ss_pred CCCCEEEEEeCCCcccHH---HHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhcc-CCeeEEE-EeCCcchhhHHHHH
Confidence 567899999998653322 233678888999999887777677777777666664 5677665 56798887666555
Q ss_pred hc
Q 011290 187 LE 188 (489)
Q Consensus 187 ~~ 188 (489)
..
T Consensus 213 ~~ 214 (302)
T 3lkv_A 213 IV 214 (302)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 95
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=50.12 E-value=18 Score=33.54 Aligned_cols=57 Identities=9% Similarity=0.107 Sum_probs=38.3
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGt 178 (489)
+|++||.|+..-. + ..+.+.+...|++++++..... + .+-. ++.++|+||+.||-++
T Consensus 1 m~i~vi~h~~~e~------~-g~~~~~l~~~g~~~~~~~~~~~-~--~~p~--~~~~~d~lii~GGp~~ 57 (236)
T 3l7n_A 1 MRIHFILHETFEA------P-GAYLAWAALRGHDVSMTKVYRY-E--KLPK--DIDDFDMLILMGGPQS 57 (236)
T ss_dssp CEEEEEECCTTSC------C-HHHHHHHHHTTCEEEEEEGGGT-C--CCCS--CGGGCSEEEECCCSSC
T ss_pred CeEEEEeCCCCCC------c-hHHHHHHHHCCCeEEEEeeeCC-C--CCCC--CccccCEEEECCCCCC
Confidence 3688888775532 2 3577889999999888765321 1 0101 2357999999999887
No 96
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=49.03 E-value=52 Score=31.78 Aligned_cols=88 Identities=14% Similarity=0.265 Sum_probs=51.8
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+.+.+.|++. .....--.. +.+-++..+++.|+.+.+..+... ....++++.+...++|+||+++.+.. .+.+..|
T Consensus 65 ~s~~Igvi~~-~~~~~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l 141 (348)
T 3bil_A 65 RSNTIGVIVP-SLINHYFAA-MVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDL 141 (348)
T ss_dssp ---CEEEEES-CSSSHHHHH-HHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHH
T ss_pred CCCEEEEEeC-CCCCcHHHH-HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHH
Confidence 3455767663 322111122 224567778888998888776542 33345666666678999999988765 4566655
Q ss_pred hcCcCccccCCCcEEEecC
Q 011290 187 LEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (489)
... .+|+-.+-.
T Consensus 142 ~~~-------~iPvV~i~~ 153 (348)
T 3bil_A 142 QKQ-------GMPVVLVDR 153 (348)
T ss_dssp HHC--------CCEEEESS
T ss_pred HhC-------CCCEEEEcc
Confidence 443 577766644
No 97
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=48.93 E-value=59 Score=30.38 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCChHH-----HHHHHhhcCcCccccCCCcEEEecC
Q 011290 165 SKYDGIVCVSGDGILV-----EVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 165 ~~~d~IV~vGGDGtl~-----EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
..||.|++.||-|... +-+..++.+-. ....+|+.|=.
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~---~~gk~iaaIC~ 139 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIY---ANGGVIAAICH 139 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHH---HTTCEEEEETT
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHH---HcCCEEEEECH
Confidence 4699999999999742 22222322211 12567888877
No 98
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=48.49 E-value=95 Score=29.55 Aligned_cols=87 Identities=8% Similarity=0.187 Sum_probs=53.4
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++.+.+.|++...+..-- ..++ +-++..+++.|..+.+..+.. .....++++.+...+.|+||+++-+..- +.+..
T Consensus 60 ~~~~~Igvi~~~~~~~~~-~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~~~ 136 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVF-LETL-TGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAE-PFERI 136 (339)
T ss_dssp ---CEEEEEESCSTTCTT-HHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCT-THHHH
T ss_pred CCCCEEEEEeCCCCCHHH-HHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCH-HHHHH
Confidence 345567777754332221 2233 567788888999888777654 3334456677766789999999876543 44444
Q ss_pred hhcCcCccccCCCcEEEe
Q 011290 186 LLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiI 203 (489)
+... .+|+-++
T Consensus 137 l~~~-------~iPvV~~ 147 (339)
T 3h5o_A 137 LSQH-------ALPVVYM 147 (339)
T ss_dssp HHHT-------TCCEEEE
T ss_pred HhcC-------CCCEEEE
Confidence 4433 6777666
No 99
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=48.26 E-value=67 Score=30.57 Aligned_cols=89 Identities=11% Similarity=0.176 Sum_probs=53.1
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++.+.+.+++.-.. ..--..+ .+-++..+++.|..+.+..+... ....++++.+...+.|+||+++.+.. .+.+..
T Consensus 61 ~~~~~Ig~i~~~~~-~~~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 137 (332)
T 2o20_A 61 KRTTTVGVILPTIT-STYFAAI-TRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKIRTS 137 (332)
T ss_dssp -CCCEEEEEESCTT-CHHHHHH-HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHHHHH
T ss_pred CCCCEEEEEeCCCC-CcHHHHH-HHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 34566777774322 1111222 24567778888998877766542 23345666666678999999987654 345555
Q ss_pred hhcCcCccccCCCcEEEecC
Q 011290 186 LLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~ 205 (489)
|... .+|+-.+-.
T Consensus 138 l~~~-------~iPvV~~~~ 150 (332)
T 2o20_A 138 LKNS-------RTPVVLVGT 150 (332)
T ss_dssp HHHH-------CCCEEEESC
T ss_pred HHhC-------CCCEEEEcc
Confidence 5432 577766644
No 100
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=47.73 E-value=32 Score=32.07 Aligned_cols=87 Identities=8% Similarity=0.047 Sum_probs=54.0
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC---hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEV 182 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~---~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EV 182 (489)
++.+++.|++.-.+..-- .. +.+-++..+++.|+++.+..+.. .....+.++.+...++|+||+++.|.. +.+.
T Consensus 3 ~~~~~Igvi~~~~~~~~~-~~-~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~ 80 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYW-LS-VNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHN 80 (304)
T ss_dssp --CCEEEEEESCSCSHHH-HH-HHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTT
T ss_pred CCCcEEEEEeCCCCCcHH-HH-HHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHH
Confidence 456778777764432211 12 22457777888899988888774 334445666665578999999988754 2344
Q ss_pred HHHhhcCcCccccCCCcEEEe
Q 011290 183 VNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 183 vnGL~~~~~~~~~~~~plgiI 203 (489)
++.+. . .+|+-.+
T Consensus 81 ~~~~~-~-------~iPvV~~ 93 (304)
T 3o1i_D 81 LKSWV-G-------NTPVFAT 93 (304)
T ss_dssp HHHHT-T-------TSCEEEC
T ss_pred HHHHc-C-------CCCEEEe
Confidence 55444 3 6777666
No 101
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=46.98 E-value=18 Score=39.99 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=39.5
Q ss_pred HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 154 ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
...++++.+...+.|.+|++|||||+.-+. .|.+.........+|+--||. ==-|++..
T Consensus 477 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~~~~~~~~~~i~vvgiPk-----TIDNDl~g 535 (762)
T 3o8l_A 477 SFEQISANITKFNIQGLVIIGGFEAYTGGL-ELMEGRKQFDELCIPFVVIPA-----TVSNNVPG 535 (762)
T ss_dssp GHHHHHHHHHHTTCCCEEEEESHHHHHHHH-HHHHHHHHCSTTCSCEEEEEB-----CTTCCCTT
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHH-HHHHHHHhccccCCCEEeecc-----ccCCCCCC
Confidence 455667777767899999999999987543 232210000113689999999 66788874
No 102
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=46.53 E-value=96 Score=29.82 Aligned_cols=87 Identities=10% Similarity=0.150 Sum_probs=54.3
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++.+.+.|++...+.. --..+ .+-++..+.+.|..+.+..+.. .....++++.+...+.|+||+++.+.+- +.+..
T Consensus 68 ~~~~~Igvi~~~~~~~-~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~-~~~~~ 144 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNL-HFAQT-AQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTE-QTIRL 144 (355)
T ss_dssp ---CEEEEEESCSBCH-HHHHH-HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCH-HHHHH
T ss_pred CCCCEEEEEeCCCCch-HHHHH-HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCH-HHHHH
Confidence 3445666666433221 11222 3567788888999888877754 3334466677766789999999987763 55555
Q ss_pred hhcCcCccccCCCcEEEe
Q 011290 186 LLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiI 203 (489)
|... .+|+-.+
T Consensus 145 l~~~-------~iPvV~i 155 (355)
T 3e3m_A 145 LQRA-------SIPIVEI 155 (355)
T ss_dssp HHHC-------CSCEEEE
T ss_pred HHhC-------CCCEEEE
Confidence 5543 6787776
No 103
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=46.24 E-value=49 Score=31.47 Aligned_cols=78 Identities=15% Similarity=0.058 Sum_probs=47.6
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
.-+|+.+|.. ... .+.... +.++..|+++|+++.... .....+....++++...+.|+|++++.|.....++..
T Consensus 134 g~~~ia~i~~-~~~--~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~ 209 (362)
T 3snr_A 134 NVKTVGYIGY-SDS--YGDLWF-NDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGTAAALPQTT 209 (362)
T ss_dssp TCCEEEEEEE-SSH--HHHHHH-HHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHH
T ss_pred CCCEEEEEec-Cch--HHHHHH-HHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 3578887743 221 122223 567888999998754222 2222233344555544578999998878777888888
Q ss_pred hhcC
Q 011290 186 LLER 189 (489)
Q Consensus 186 L~~~ 189 (489)
+.+.
T Consensus 210 ~~~~ 213 (362)
T 3snr_A 210 LRER 213 (362)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7665
No 104
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=45.55 E-value=12 Score=40.81 Aligned_cols=84 Identities=15% Similarity=0.193 Sum_probs=52.5
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHH-HHHHHHhhcCCCceEEEEcCC-C----------
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA-KEIVKVLDLSKYDGIVCVSGD-G---------- 177 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha-~el~~~~~~~~~d~IV~vGGD-G---------- 177 (489)
|++.||+..- .....+. ..+...|+++|+.++++-.+.. +. ......++...||+||+.||- |
T Consensus 538 rKVaILvadG--~fE~~El--~~p~~aL~~aGa~V~vVsp~~g-~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~ 612 (688)
T 3ej6_A 538 LRVGVLSTTK--GGSLDKA--KALKEQLEKDGLKVTVIAEYLA-SGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSP 612 (688)
T ss_dssp CEEEEECCSS--SSHHHHH--HHHHHHHHHTTCEEEEEESSCC-TTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCT
T ss_pred CEEEEEccCC--CccHHHH--HHHHHHHHHCCCEEEEEeCCCC-CCcccCcccCChhcCcEEEECCCcccccccccchhh
Confidence 6788888642 1122222 3678899999999998866442 21 111122223469999999993 3
Q ss_pred -----hHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 178 -----ILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 178 -----tl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
.+.+++...+.. .-|||.|-.
T Consensus 613 Lr~~~~a~~fV~e~~~h-------gKpIAAIch 638 (688)
T 3ej6_A 613 LFPAGRPSQILTDGYRW-------GKPVAAVGS 638 (688)
T ss_dssp TSCTTHHHHHHHHHHHT-------TCCEEEEGG
T ss_pred hccCHHHHHHHHHHHHc-------CCEEEEeCc
Confidence 344556555554 578999887
No 105
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=45.43 E-value=23 Score=39.17 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=39.2
Q ss_pred HHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 155 a~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
..++++.+..-+.|++|++||||++.- ++.|.+.........+|+--||. ==-|++..
T Consensus 472 ~~~~~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~~~~~~~~~i~vIgiPk-----TIDNDl~g 529 (787)
T 3o8o_A 472 LGTIAYYFQKNKLDGLIILGGFEGFRS-LKQLRDGRTQHPIFNIPMCLIPA-----TVSNNVPG 529 (787)
T ss_dssp HHHHHHHHHHTTCSEEEEEESHHHHHH-HHHHHHHTTTCGGGGSCEEEEEB-----CTTCCCTT
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHH-HHHHHHHHHhcCccCCceeeccc-----ccccCCCC
Confidence 445666666678899999999999865 33444321111113689999999 66788864
No 106
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=45.33 E-value=65 Score=31.32 Aligned_cols=77 Identities=10% Similarity=0.189 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~--~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
-+|+.+|..... .+... .+.++..|+++|+++.....-. ..+....++++...++|.|++++.|.....++..+
T Consensus 143 ~~~iaii~~~~~---~g~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~ 218 (392)
T 3lkb_A 143 GAKVALVVHPSP---FGRAP-VEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDA 218 (392)
T ss_dssp TCEEEEEECSSH---HHHTT-HHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEEEeCCc---hhhhH-HHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHH
Confidence 478988885432 12222 3567888899998765443222 22344556666557899999999888888888888
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
.+.
T Consensus 219 ~~~ 221 (392)
T 3lkb_A 219 KRL 221 (392)
T ss_dssp HHT
T ss_pred HHc
Confidence 765
No 107
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=45.24 E-value=47 Score=29.56 Aligned_cols=65 Identities=8% Similarity=0.002 Sum_probs=41.7
Q ss_pred cCCCcEEEEEEcCCC-------CCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhc---CCCceE
Q 011290 106 FGRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGI 170 (489)
Q Consensus 106 ~~rpkr~lviiNP~s-------G~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~---~~~d~I 170 (489)
..+|+.+.+|||-.- ..+.+...=.+.++.+|+..|++++++.=-...+..+.++++.. ..+|.+
T Consensus 40 ~~~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~~dlt~~em~~~l~~~s~~dh~~~dc~ 114 (173)
T 2ql9_A 40 NFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACF 114 (173)
T ss_dssp CSSEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHTSCCTTEEEE
T ss_pred CCCCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCeE
Confidence 345677888887641 11223223346799999999999988876666667776666543 345643
No 108
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=44.89 E-value=45 Score=30.65 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=12.3
Q ss_pred CCCceEEEEcCCCh
Q 011290 165 SKYDGIVCVSGDGI 178 (489)
Q Consensus 165 ~~~d~IV~vGGDGt 178 (489)
..||.|++.||-|.
T Consensus 89 ~~~D~livpGG~~~ 102 (232)
T 1vhq_A 89 AELDALIVPGGFGA 102 (232)
T ss_dssp GGCSEEEECCSTHH
T ss_pred ccCCEEEECCCcch
Confidence 46999999999876
No 109
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=44.66 E-value=1.9e+02 Score=26.70 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=46.3
Q ss_pred hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc-CCChHHHHHH-----HhhcCcCccccCCCcEEEe
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGILVEVVN-----GLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG-GDGtl~EVvn-----GL~~~~~~~~~~~~plgiI 203 (489)
.+.+...|+..+++++...... +-+..|.+.+...+.|.||+.. |-+.+.+.+- .++.+ .++|+-++
T Consensus 216 l~~~~~~l~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~------~~~pvLvv 288 (294)
T 3loq_A 216 LRVMEEVIGAEGIEVHVHIESG-TPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRR------SPVPVFVC 288 (294)
T ss_dssp HHHHHHHHHHTTCCEEEEEECS-CHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHH------CSSCEEEE
T ss_pred HHHHHHHHHHcCCcEEEEEecC-CHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhc------CCCCEEEE
Confidence 3578888988999877655443 4566677776666788665543 5666666543 34443 37899999
Q ss_pred cC
Q 011290 204 PA 205 (489)
Q Consensus 204 P~ 205 (489)
|.
T Consensus 289 ~~ 290 (294)
T 3loq_A 289 KR 290 (294)
T ss_dssp CS
T ss_pred CC
Confidence 87
No 110
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=44.40 E-value=1.9e+02 Score=27.25 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=37.8
Q ss_pred HhHHHHHHhCCCcEEEE--EeC---ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhc
Q 011290 131 DDVKPLLEDANIQFTVQ--ETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLE 188 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~--~T~---~~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~ 188 (489)
+-++..+++.|..+.+. .+. ......+.++.+...++|+||+ .+|.. ..+.+..+..
T Consensus 64 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi-~~~~~~~~~~~~~~~~ 126 (342)
T 1jx6_A 64 ASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIF-TLDTTRHRKFVEHVLD 126 (342)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEE-CCSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEE-eCChHhHHHHHHHHHH
Confidence 45677788889887776 354 3344445667766678999999 66654 3466666544
No 111
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=44.13 E-value=51 Score=30.89 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=45.1
Q ss_pred HhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+-++..+++.|+++.+..+.. .....++++.+...+.|+||+.+.+.. +.+.+..+... .+|+-.+-.
T Consensus 22 ~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~~~~ 91 (306)
T 2vk2_A 22 NVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDA-------EIPVFLLDR 91 (306)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHHT-------TCCEEEESS
T ss_pred HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHC-------CCCEEEecC
Confidence 456777888899887776643 233345666665568999999988764 35666655443 577766543
No 112
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=43.90 E-value=45 Score=31.96 Aligned_cols=110 Identities=10% Similarity=0.010 Sum_probs=63.8
Q ss_pred cCCCcEEEEEEcCCC-------CCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhc---CCCceEE-EE-
Q 011290 106 FGRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIV-CV- 173 (489)
Q Consensus 106 ~~rpkr~lviiNP~s-------G~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~---~~~d~IV-~v- 173 (489)
..+|+++.+|||-.. ....+...=.+.++.+|+..|+++++..=-...+..+.++++.. ..+|.+| ++
T Consensus 17 ~~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~vv~il 96 (278)
T 3od5_A 17 DHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFL 96 (278)
T ss_dssp CSSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCTTBSCEEEEEE
T ss_pred CCCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEEEEEE
Confidence 356777877777642 12222222236799999999999988876666666666666533 3566433 33
Q ss_pred ---------cCCCh--HHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceecc
Q 011290 174 ---------SGDGI--LVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKSL 220 (489)
Q Consensus 174 ---------GGDGt--l~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~sl 220 (489)
|=||. +.++++-+-...-..-+.++.|-+|-| ==||.+...+
T Consensus 97 SHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQA-----CRG~~~~~g~ 149 (278)
T 3od5_A 97 SHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQA-----CRGNQHDVPV 149 (278)
T ss_dssp SCEETTEEECSSSEEEHHHHHHTTSTTTCGGGTTSCEEEEEES-----CCSSBCBCEE
T ss_pred CCCCCCEEEEeCCeEEHHHHHHHhccccChhhcCCCcEEEEec-----CCCCcccCCe
Confidence 34443 234444333221111123677899998 5577666543
No 113
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=43.50 E-value=24 Score=31.99 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=34.2
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCC-ChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 153 LHAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 153 ~ha~el~~~~~~~~~d~IV~vGGD-Gtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
..|+++.+.+...++ .||.-||. |....+..|..+.. ...+|++|.
T Consensus 31 ~~A~~lg~~la~~g~-~lv~GGG~~GlM~a~~~ga~~~G------G~viGv~p~ 77 (189)
T 3sbx_A 31 ELAGAVGAAIAARGW-TLVWGGGHVSAMGAVSSAARAHG------GWTVGVIPK 77 (189)
T ss_dssp HHHHHHHHHHHHTTC-EEEECCBCSHHHHHHHHHHHTTT------CCEEEEEET
T ss_pred HHHHHHHHHHHHCCC-EEEECCCccCHHHHHHHHHHHcC------CcEEEEcCc
Confidence 346677777765554 46666678 99999999988763 578999998
No 114
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=43.38 E-value=22 Score=39.33 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=37.3
Q ss_pred HHHHHhhcCCCceEEEEcCCChHHHHH----------HHhhc-----CcCccccCCCcEEEecCcCCCCccccccee
Q 011290 157 EIVKVLDLSKYDGIVCVSGDGILVEVV----------NGLLE-----REDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 157 el~~~~~~~~~d~IV~vGGDGtl~EVv----------nGL~~-----~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.+++.+...+.|.+|++|||||+.-+- +.|.+ .........+++--||. ==-|+++.
T Consensus 90 ~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPk-----TIDNDl~g 161 (787)
T 3o8o_A 90 QAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVG-----SIDNDMSG 161 (787)
T ss_dssp HHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEE-----ESSCCCTT
T ss_pred HHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEee-----cCcCCCCC
Confidence 445555555789999999999987442 22332 11122224689999998 66788874
No 115
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=43.34 E-value=1.8e+02 Score=27.55 Aligned_cols=111 Identities=16% Similarity=0.235 Sum_probs=66.1
Q ss_pred hhhcCCCcEEEEEEcCCC--------------CCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhc---C
Q 011290 103 IDSFGRPKRLYIFVNPFG--------------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---S 165 (489)
Q Consensus 103 ~~~~~rpkr~lviiNP~s--------------G~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~---~ 165 (489)
+.-..+|+++.+|||-.. ..+.+...=.+.++.+|+..|+++++..=-...+..+.++++.. .
T Consensus 10 Y~m~~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~ 89 (271)
T 3h11_B 10 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHS 89 (271)
T ss_dssp CCCCSSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCT
T ss_pred CCCCCCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence 333456778887777521 11122222236799999999999988876666666666666532 3
Q ss_pred CCceEEE-----------EcCCCh---HHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 166 KYDGIVC-----------VSGDGI---LVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 166 ~~d~IV~-----------vGGDGt---l~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.+|.+|| +|=||. +.++.+-+-...-..-+.++.|-+|-| =-||.+..
T Consensus 90 ~~d~~v~~ilSHG~~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQA-----CRG~~~~~ 151 (271)
T 3h11_B 90 NMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQA-----CQGDNYQK 151 (271)
T ss_dssp TCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEES-----CCSSBCC-
T ss_pred CCCEEEEEEEcCCcCCEEEecCCCeecHHHHHHHhhhccChhhcCCccEEEEec-----cCCCcccC
Confidence 5675442 455663 566666554322111233677999999 66666654
No 116
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=43.30 E-value=50 Score=30.44 Aligned_cols=89 Identities=11% Similarity=0.092 Sum_probs=50.9
Q ss_pred CCcEEEEEEcCCCC--CccccccchHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHhhcCCCceEEEEcCCChH-HH
Q 011290 108 RPKRLYIFVNPFGG--KKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VE 181 (489)
Q Consensus 108 rpkr~lviiNP~sG--~~~a~~~~~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~~~~~~d~IV~vGGDGtl-~E 181 (489)
+.+++.|++ |..+ ..--.. +.+-++..+++.|+++.+..+. ......++++.+...++|+||+.+.+..- .+
T Consensus 4 ~~~~Ig~v~-~~~~~~~~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~ 81 (289)
T 3brs_A 4 KQYYMICIP-KVLDDSSDFWSV-LVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYD 81 (289)
T ss_dssp -CCEEEEEC-SCCCSSSHHHHH-HHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHH
T ss_pred CCcEEEEEe-CCCCCCchHHHH-HHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHH
Confidence 445666655 4332 111122 2245677777888887776552 33334456677666789999999887642 34
Q ss_pred HHHHhhcCcCccccCCCcEEEecC
Q 011290 182 VVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 182 VvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
.+..+.+ ..+|+-.+-.
T Consensus 82 ~~~~~~~-------~~iPvV~~~~ 98 (289)
T 3brs_A 82 AAKEIKD-------AGIKLIVIDS 98 (289)
T ss_dssp HHTTTGG-------GTCEEEEESS
T ss_pred HHHHHHH-------CCCcEEEECC
Confidence 4544433 2678766644
No 117
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=43.24 E-value=1.3e+02 Score=26.34 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=31.8
Q ss_pred HhHHHHHHhCCCcEEE--EEeCChhHHHHHHHHhhcC-CCceEEEEcCCC
Q 011290 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLS-KYDGIVCVSGDG 177 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v--~~T~~~~ha~el~~~~~~~-~~d~IV~vGGDG 177 (489)
..+...|+++|+++.. +.-+......+.++++... ++|.||+.||=|
T Consensus 31 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g 80 (172)
T 1mkz_A 31 HYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTG 80 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCS
T ss_pred HHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 4688899999987643 3344555555555554333 599999999976
No 118
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=43.23 E-value=71 Score=29.19 Aligned_cols=87 Identities=9% Similarity=0.193 Sum_probs=51.7
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHH-
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN- 184 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn- 184 (489)
++.+.+.|++.-.+.. --..+ .+-++..+++.|+.+.+..+... ....++.+.+...++|+||+.+.+ .+.+.
T Consensus 6 ~~~~~Ig~i~~~~~~~-~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~~ 80 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNP-FFTLI-ARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAFN---ENIIEN 80 (277)
T ss_dssp ----CEEEEESCTTSH-HHHHH-HHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHHH
T ss_pred CCCCEEEEEECCCCCH-HHHHH-HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHHH
Confidence 3445566666433221 12222 35677888889999888777543 334456677766789999998844 45555
Q ss_pred HhhcCcCccccCCCcEEEecC
Q 011290 185 GLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~ 205 (489)
.+... .+|+-.+-.
T Consensus 81 ~l~~~-------~iPvV~~~~ 94 (277)
T 3e61_A 81 TLTDH-------HIPFVFIDR 94 (277)
T ss_dssp HHHHC--------CCEEEGGG
T ss_pred HHHcC-------CCCEEEEec
Confidence 55543 677776644
No 119
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=43.22 E-value=63 Score=29.95 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=53.3
Q ss_pred CCCcEEEEEEcCCCCC-ccccccchHhHHHHHHhCCCcEEEEEeCChhH-HHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGK-KIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~-~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~h-a~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
++.+.+.|++...... .--.+ +.+-++..+++.|..+.+..+..... ..++.+.+...+.|+||+++.+.. .+.+.
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~ 83 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQ-MVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPN-DPRVR 83 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHH-HHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT-CHHHH
T ss_pred CCCCEEEEEecCCccccHHHHH-HHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCC-cHHHH
Confidence 4566777777643321 11122 23467777888888887776654322 334445555578999999987644 25566
Q ss_pred HhhcCcCccccCCCcEEEecC
Q 011290 185 GLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~ 205 (489)
.+.+. .+|+-.+-.
T Consensus 84 ~l~~~-------~iPvV~i~~ 97 (288)
T 3gv0_A 84 FMTER-------NMPFVTHGR 97 (288)
T ss_dssp HHHHT-------TCCEEEESC
T ss_pred HHhhC-------CCCEEEECC
Confidence 55543 678766644
No 120
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=42.94 E-value=34 Score=32.86 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=63.6
Q ss_pred hcCCCcEEEEEEcCCCC-------CccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhc---CCCceEE-EE
Q 011290 105 SFGRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIV-CV 173 (489)
Q Consensus 105 ~~~rpkr~lviiNP~sG-------~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~---~~~d~IV-~v 173 (489)
-..+|+++.+|||-..= ...+...=.+.++.+|+..|+++++..=-...+..+.++++.. ..+|.+| ++
T Consensus 39 m~~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~d~~vv~i 118 (277)
T 4ehd_A 39 MDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVL 118 (277)
T ss_dssp CCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEE
T ss_pred CCCCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEEEEE
Confidence 34567888888874221 1122222235799999999999988876666676666666643 3456433 33
Q ss_pred ----------cCCCh--HHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceec
Q 011290 174 ----------SGDGI--LVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKS 219 (489)
Q Consensus 174 ----------GGDGt--l~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~s 219 (489)
|=||. +.++++-+-...-..-+.++.|-||-| =-||.+...
T Consensus 119 lSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQA-----CRG~~~~~g 171 (277)
T 4ehd_A 119 LSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQA-----CRGTELDCG 171 (277)
T ss_dssp ESCEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEES-----CCSSBCBCC
T ss_pred EcCCCCCEEEEeCCcEeHHHHHHHhhhccCchhcCCccEEEEec-----CCCCcccCC
Confidence 33442 334444333221111123677999999 667766553
No 121
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=42.77 E-value=14 Score=33.19 Aligned_cols=67 Identities=12% Similarity=0.188 Sum_probs=38.0
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChh-------H----HHHHHHHhhcCCCceEEEEcC
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-------H----AKEIVKVLDLSKYDGIVCVSG 175 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~-------h----a~el~~~~~~~~~d~IV~vGG 175 (489)
.+++++.|++-|..- ... + ......|+.+|++++++-.+... - +..-..+++...||.||+.||
T Consensus 21 ~~~~kV~ill~~g~~---~~e-~-~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG 95 (193)
T 1oi4_A 21 GLSKKIAVLITDEFE---DSE-F-TSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG 95 (193)
T ss_dssp TCCCEEEEECCTTBC---THH-H-HHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB
T ss_pred ccCCEEEEEECCCCC---HHH-H-HHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCC
Confidence 457789888886321 111 1 23566788899888776443210 0 000001122246999999999
Q ss_pred CCh
Q 011290 176 DGI 178 (489)
Q Consensus 176 DGt 178 (489)
.|.
T Consensus 96 ~~~ 98 (193)
T 1oi4_A 96 HSP 98 (193)
T ss_dssp THH
T ss_pred cCH
Confidence 664
No 122
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=42.76 E-value=40 Score=27.24 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=35.4
Q ss_pred CcEEEEEEc-----CCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011290 109 PKRLYIFVN-----PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (489)
Q Consensus 109 pkr~lviiN-----P~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGD 176 (489)
..++.||.- |.. -|-++++.+|+..|++++.+.......+.+-+.+..-...--.|.++|.
T Consensus 15 ~~~Vvlf~kg~~~~~~C-------p~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi~g~ 80 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRC-------GFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGE 80 (111)
T ss_dssp SSSEEEEESBCSSSBSS-------HHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTE
T ss_pred cCCEEEEEecCCCCCcc-------hhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEECCE
Confidence 356888865 322 1557899999999999988765443344443343321222234455554
No 123
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=42.34 E-value=21 Score=40.33 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=36.9
Q ss_pred HHHHHHhhcCCCceEEEEcCCChHHHHHHHh-----------hcCc-----CccccCCCcEEEecCcCCCCccccccee
Q 011290 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGL-----------LERE-----DWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 156 ~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL-----------~~~~-----~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.++++.+...+.|.+|++|||||+.-+ +-| .++. +......+++--||. ==-|+++-
T Consensus 294 ~~~~~~L~~~gId~LvvIGGDGS~~gA-~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPk-----TIDNDl~g 366 (989)
T 3opy_A 294 LQACYNMVSNGIDALVVCGGDGSLTGA-DLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVG-----SIDNDMCG 366 (989)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHH-HHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEE-----ESSCCCTT
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhHHH-HHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEee-----cccCCCCC
Confidence 355666666789999999999998743 222 1110 011123689999998 66788874
No 124
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=41.77 E-value=54 Score=30.56 Aligned_cols=68 Identities=9% Similarity=0.118 Sum_probs=47.0
Q ss_pred HhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+-++..+++.|+++.+..+. ......+.++.+...++|+||+.+.|.. +.+.+..+... .+|+-.+-.
T Consensus 23 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~-------giPvV~~~~ 94 (297)
T 3rot_A 23 QGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRANKL-------NIPVIAVDT 94 (297)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHHHHH-------TCCEEEESC
T ss_pred HHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHC-------CCCEEEEcC
Confidence 45777788889988887765 4455556677776678999999888765 34555555443 677766644
No 125
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=41.41 E-value=60 Score=28.19 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.5
Q ss_pred CCCceEEEEcCCChHHHHHHHhhcC
Q 011290 165 SKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 165 ~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
+.+|.+|.++|||=+..+++.|-++
T Consensus 107 ~~~d~~vLvSgD~DF~plv~~lr~~ 131 (165)
T 2qip_A 107 PDVDRVILVSGDGDFSLLVERIQQR 131 (165)
T ss_dssp GGCSEEEEECCCGGGHHHHHHHHHH
T ss_pred ccCCEEEEEECChhHHHHHHHHHHH
Confidence 5799999999999999999988763
No 126
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=41.31 E-value=20 Score=38.13 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=58.6
Q ss_pred cEEEEEEcCCCCC--ccccccchHhHHHHHHhCCCc---EEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 110 KRLYIFVNPFGGK--KIASKIFLDDVKPLLEDANIQ---FTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 110 kr~lviiNP~sG~--~~a~~~~~~~v~p~l~~a~i~---~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
.+++-|.|=+.|= ++-..+-.+.|..++..-|.. ..-..-.....-.++++.+...+.|.+|++|||||+.-+.
T Consensus 105 ~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~- 183 (555)
T 2f48_A 105 SKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAA- 183 (555)
T ss_dssp CEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHH-
T ss_pred CEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcHHHHHH-
Confidence 5677777655542 222223224677777766621 0000011233445666777667889999999999976432
Q ss_pred HhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 185 GLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
-|.+.- ......+++--||. ==-|+++.
T Consensus 184 ~L~e~~-~~~~~~i~vIGiPk-----TIDNDl~~ 211 (555)
T 2f48_A 184 ILAEYF-KKNGENIQVIGVPK-----TIDADLRN 211 (555)
T ss_dssp HHHHHH-HHTTCCCEEEEEEE-----ETTCCCCC
T ss_pred HHHHHH-HHhCCCCcEEEecc-----ccCCCCCC
Confidence 232210 01124689999998 66788864
No 127
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=41.16 E-value=63 Score=30.72 Aligned_cols=90 Identities=7% Similarity=-0.025 Sum_probs=53.4
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCC--CceEEEEcCCCh-HHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSK--YDGIVCVSGDGI-LVEV 182 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~--~d~IV~vGGDGt-l~EV 182 (489)
++.+++.|++.-.+.. --.. +.+-++..+++.|+++.+..+... ....++++.+...+ +|+||+.+.+.. ..+.
T Consensus 3 ~~s~~Igvi~~~~~~~-~~~~-~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNP-YYTA-FNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CCCCEEEEEESCTTSH-HHHH-HHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHH
T ss_pred CCccEEEEEecCCCcH-HHHH-HHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHH
Confidence 3456677776432221 1112 224567778888998887766532 23345566665567 999999988764 3355
Q ss_pred HHHhhcCcCccccCCCcEEEecC
Q 011290 183 VNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 183 vnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+..+... .+|+-.+-.
T Consensus 81 ~~~~~~~-------~iPvV~~~~ 96 (332)
T 2rjo_A 81 VEACSKA-------GAYVTTIWN 96 (332)
T ss_dssp HHHHHHH-------TCEEEEESC
T ss_pred HHHHHHC-------CCeEEEECC
Confidence 6555432 577766644
No 128
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=41.02 E-value=85 Score=28.98 Aligned_cols=71 Identities=17% Similarity=0.122 Sum_probs=45.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHH------------hhcCCCceEEEEcCC
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKV------------LDLSKYDGIVCVSGD 176 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~------------~~~~~~d~IV~vGGD 176 (489)
.++++|+ |.|+.- ..+++ .|..+|..++|+..+-.....+++.+ -++.++|.||++-||
T Consensus 31 gk~VLVV-----GgG~va---~~ka~-~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d 101 (223)
T 3dfz_A 31 GRSVLVV-----GGGTIA---TRRIK-GFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATND 101 (223)
T ss_dssp TCCEEEE-----CCSHHH---HHHHH-HHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCC
T ss_pred CCEEEEE-----CCCHHH---HHHHH-HHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCC
Confidence 4566666 444322 12343 45556777777765544445555543 235678999999999
Q ss_pred ChHHHHHHHhhc
Q 011290 177 GILVEVVNGLLE 188 (489)
Q Consensus 177 Gtl~EVvnGL~~ 188 (489)
-.+|+.+-.+..
T Consensus 102 ~~~N~~I~~~ak 113 (223)
T 3dfz_A 102 QAVNKFVKQHIK 113 (223)
T ss_dssp THHHHHHHHHSC
T ss_pred HHHHHHHHHHHh
Confidence 999999887754
No 129
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=40.95 E-value=1e+02 Score=29.24 Aligned_cols=89 Identities=12% Similarity=0.209 Sum_probs=53.0
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChh-HHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~-ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++.+.+.+++.-.+.. --..+ .+-++..+++.|..+.+..+.... ...++++.+...++|+||+++.+..- +.+..
T Consensus 58 ~~~~~Ig~i~~~~~~~-~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~ 134 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNI-FYAEL-ARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEE 134 (332)
T ss_dssp C-CCEEEEEEC--CCS-HHHHH-HHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHH
T ss_pred CCCCEEEEEeCCCCCc-HHHHH-HHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHH
Confidence 3455677776432221 11222 246777788889988777665432 23456667666789999999887653 55655
Q ss_pred hhcCcCccccCCCcEEEecC
Q 011290 186 LLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~ 205 (489)
+... .+|+-.+-.
T Consensus 135 l~~~-------~iPvV~~~~ 147 (332)
T 2hsg_A 135 LKKS-------PVPVVLAAS 147 (332)
T ss_dssp HTTS-------SSCEEEESC
T ss_pred HHhC-------CCCEEEEcc
Confidence 5432 678766644
No 130
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=40.90 E-value=70 Score=27.85 Aligned_cols=63 Identities=6% Similarity=0.123 Sum_probs=43.9
Q ss_pred CcEEEEEEcCCC---CCccccccc--------hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEE
Q 011290 109 PKRLYIFVNPFG---GKKIASKIF--------LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (489)
Q Consensus 109 pkr~lviiNP~s---G~~~a~~~~--------~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~v 173 (489)
+++++|+-=|.- |++. ..+| ++.++....+.|++++.+.+.+++...+.+.++. +++|+||+-
T Consensus 7 m~~IlvlNGPNLNlLG~RE-P~iYG~~Tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~-~~~dgiiIN 80 (153)
T 3lwz_A 7 KFHILLLNGPNLNLLGTRE-PEKYGYTTLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQAR-GNTDFILIN 80 (153)
T ss_dssp CEEEEEEECTTGGGTTTSS-HHHHCCCCHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHT-TTCSEEEEE
T ss_pred cCeEEEEcCCCccccCCCC-CCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh-hcCceEEEc
Confidence 457888887873 2222 2233 3455666666899999999999999888888764 568887753
No 131
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=40.79 E-value=88 Score=29.94 Aligned_cols=78 Identities=8% Similarity=0.052 Sum_probs=49.0
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T--~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
.-+++.+|..... .+.... +.++..|+++|+++..... ....+....++++...+.|.|++++.|.....+++.
T Consensus 150 g~~~ia~i~~~~~---~~~~~~-~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~ 225 (375)
T 4evq_A 150 GLKKAVTVTWKYA---AGEEMV-SGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKD 225 (375)
T ss_dssp TCCEEEEEEESSH---HHHHHH-HHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHH
T ss_pred CCcEEEEEecCch---HHHHHH-HHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 4578888863221 222222 5678889999997633221 122233445555544578999998999888888888
Q ss_pred hhcC
Q 011290 186 LLER 189 (489)
Q Consensus 186 L~~~ 189 (489)
+.+.
T Consensus 226 ~~~~ 229 (375)
T 4evq_A 226 YAAA 229 (375)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8765
No 132
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=40.62 E-value=1.5e+02 Score=28.14 Aligned_cols=88 Identities=10% Similarity=0.159 Sum_probs=51.1
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++.+.+.|++.-.+ ..--..+ .+-++..+++.|.++.+..+.. .....++++.+...++|+||+++.+.. .+.+..
T Consensus 56 ~~~~~Igvi~~~~~-~~~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 132 (340)
T 1qpz_A 56 NHTKSIGLLATSSE-AAYFAEI-IEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP-EPLLAM 132 (340)
T ss_dssp TCCSEEEEEESCSC-SHHHHHH-HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHH
T ss_pred CCCCEEEEEeCCCC-ChHHHHH-HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-hHHHHH
Confidence 45667777764322 2111222 2456777888898887766643 233345566666678999999987754 233333
Q ss_pred hhcCcCccccCCCcEEEe
Q 011290 186 LLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiI 203 (489)
|... ..+|+-.+
T Consensus 133 l~~~------~~iPvV~~ 144 (340)
T 1qpz_A 133 LEEY------RHIPMVVM 144 (340)
T ss_dssp HHTT------TTSCEEEE
T ss_pred HHhh------CCCCEEEE
Confidence 3321 25776655
No 133
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=40.50 E-value=73 Score=29.66 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=47.9
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt 178 (489)
++.+.+.|++...+..--...++ +-++..+++.|..+.+..+.. .....++++.+...+.|+||+++.+..
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIV-RGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRR 82 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCcc
Confidence 45667888876544333221333 578888999999988887754 333456677776678999999987743
No 134
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=40.26 E-value=1e+02 Score=27.59 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=51.3
Q ss_pred EEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcCCCce-EEEEcCCChHHHHHHHhh
Q 011290 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 112 ~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~~~d~-IV~vGGDGtl~EVvnGL~ 187 (489)
+.||. |...-..+. ++...+|++.|++|++... ..+....++++++...++++ |.++||.+-|-=++-++-
T Consensus 25 V~Iim----GS~SD~~v~-~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T 99 (181)
T 4b4k_A 25 VGVIM----GSTSDWETM-KYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT 99 (181)
T ss_dssp EEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTC
T ss_pred EEEEE----CCHhHHHHH-HHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcC
Confidence 55665 433334444 6888999999999998765 33455678888887677764 566799999888888764
Q ss_pred c
Q 011290 188 E 188 (489)
Q Consensus 188 ~ 188 (489)
.
T Consensus 100 ~ 100 (181)
T 4b4k_A 100 N 100 (181)
T ss_dssp C
T ss_pred C
Confidence 3
No 135
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=40.16 E-value=92 Score=29.29 Aligned_cols=88 Identities=13% Similarity=0.077 Sum_probs=55.7
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChh-HHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~-ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL 186 (489)
.+++.|++...+..-- .. +.+-++..+++.|+++.+..+.... ...+.++.+...++|+||+.+-|.. ..+.+..+
T Consensus 3 ~~~Igvi~~~~~~~~~-~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 3 KGSVGIAMPTKSSARW-ID-DGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CCEEEEEECCSSSTHH-HH-HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred CcEEEEEeCCCcchHH-HH-HHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 3456666654433221 22 2356778888899988877765432 2334556665568999999998864 45667766
Q ss_pred hcCcCccccCCCcEEEecC
Q 011290 187 LEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (489)
... .+|+-.+-.
T Consensus 81 ~~~-------giPvV~~~~ 92 (330)
T 3uug_A 81 GEQ-------GIKVIAYDR 92 (330)
T ss_dssp HHT-------TCEEEEESS
T ss_pred HHC-------CCCEEEECC
Confidence 554 688777755
No 136
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=40.02 E-value=42 Score=29.89 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCCceEEEEcC-CChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 154 HAKEIVKVLDLSKYDGIVCVSG-DGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 154 ha~el~~~~~~~~~d~IV~vGG-DGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
.|+++++.+...++ .||.-|| -|..-.+..|.++.. ...+|+||.
T Consensus 33 ~A~~lg~~La~~g~-~lVsGGg~~Gim~aa~~gAl~~g------G~tigVlP~ 78 (176)
T 2iz6_A 33 MANELGKQIATHGW-ILLTGGRSLGVMHEAMKGAKEAG------GTTIGVLPG 78 (176)
T ss_dssp HHHHHHHHHHHTTC-EEEEECSSSSHHHHHHHHHHHTT------CCEEEEECC
T ss_pred HHHHHHHHHHHCCC-EEEECCCccCHhHHHHHHHHHcC------CEEEEEeCc
Confidence 45666777765444 6788888 899999999988763 578999998
No 137
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=39.94 E-value=25 Score=29.48 Aligned_cols=81 Identities=14% Similarity=0.147 Sum_probs=45.5
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCC-CceEEEEc---CCC------hHH
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSK-YDGIVCVS---GDG------ILV 180 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~-~d~IV~vG---GDG------tl~ 180 (489)
+++|++= |..|..+++ .+.+...+...+++++++.-.... .-++.+ +|.||++. |.| .+.
T Consensus 2 ki~iiy~--S~~Gnt~~~-a~~i~~~l~~~g~~v~~~~~~~~~-------~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~ 71 (147)
T 1f4p_A 2 KALIVYG--STTGNTEYT-AETIARELADAGYEVDSRDAASVE-------AGGLFEGFDLVLLGCSTWGDDSIELQDDFI 71 (147)
T ss_dssp EEEEEEE--CSSSHHHHH-HHHHHHHHHHHTCEEEEEEGGGCC-------STTTTTTCSEEEEEECEECSSSCEECTTTH
T ss_pred eEEEEEE--CCcCHHHHH-HHHHHHHHHhcCCeeEEEehhhCC-------HHHhcCcCCEEEEEeCCCCCCCcCCChhHH
Confidence 5677774 344555553 467888888888888776533211 112456 89888763 333 455
Q ss_pred HHHHHhhcCcCccccCCCcEEEecC
Q 011290 181 EVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 181 EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
.++.-|... .....+++++=.
T Consensus 72 ~fl~~l~~~----~l~~k~~~v~~~ 92 (147)
T 1f4p_A 72 PLFDSLEET----GAQGRKVACFGC 92 (147)
T ss_dssp HHHHTGGGS----CCTTCEEEEEEE
T ss_pred HHHHHHHhc----ccCCCEEEEEee
Confidence 555544321 112456666655
No 138
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=39.49 E-value=1e+02 Score=26.13 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=43.5
Q ss_pred HhHHHHHHhCCCc-EEEEEeCChhHHHHHHHHhhcCCCceEEEEc-CCChHHHHH-----HHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQ-FTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGILVEVV-----NGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~-~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG-GDGtl~EVv-----nGL~~~~~~~~~~~~plgiI 203 (489)
+++...+...|++ ++...... .-+.+|++.+...++|.||+.. |-+.+.+.+ +.++.+ .++|+-++
T Consensus 84 ~~~~~~~~~~gv~~v~~~v~~G-~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~------a~~PVlvV 156 (163)
T 1tq8_A 84 HDAKERAHNAGAKNVEERPIVG-APVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRR------AKVDVLIV 156 (163)
T ss_dssp HHHHHHHHTTTCCEEEEEEECS-SHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHH------TTCEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEEecC-CHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHh------CCCCEEEE
Confidence 3455666777887 76655443 3466777777667888766653 456666543 334443 26899999
Q ss_pred cC
Q 011290 204 PA 205 (489)
Q Consensus 204 P~ 205 (489)
|.
T Consensus 157 ~~ 158 (163)
T 1tq8_A 157 HT 158 (163)
T ss_dssp CC
T ss_pred eC
Confidence 87
No 139
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=39.22 E-value=73 Score=27.61 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=33.7
Q ss_pred hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEE
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~ 172 (489)
++.++......|++++.+.|.+.+...+.+.++..+++|+||+
T Consensus 30 ~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiII 72 (149)
T 2uyg_A 30 EALCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVL 72 (149)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEE
T ss_pred HHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEE
Confidence 4566667777899999999999999888888875444787774
No 140
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=39.05 E-value=1.1e+02 Score=27.02 Aligned_cols=68 Identities=9% Similarity=0.061 Sum_probs=43.9
Q ss_pred CCcEEEEEEcCCC---CCccc----ccc---chHhHHHHH--HhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcC
Q 011290 108 RPKRLYIFVNPFG---GKKIA----SKI---FLDDVKPLL--EDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (489)
Q Consensus 108 rpkr~lviiNP~s---G~~~a----~~~---~~~~v~p~l--~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGG 175 (489)
-+++++||-=|.- |++.. ... .++.++... ...|++++.+.|.+++...+.+.++..+++|+||+--|
T Consensus 13 ~~~~IlVlNGPNLNlLG~REP~iYG~~TL~di~~~l~~~a~~~~~g~~v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpg 92 (167)
T 3kip_A 13 LVKKVLLINGPNLNLLGTREPEKYGTTSLSDIEQAAIEQAKLKNNDSEVLVFQSNTEGFIIDRIHEAKRQGVGFVVINAG 92 (167)
T ss_dssp CCCEEEEEECTTGGGTTCC----CCSCCHHHHHHHHHHHHHHTCSSCEEEEEECSCHHHHHHHHHHHHHTTCCEEEEECG
T ss_pred ccCeEEEEcCCCccccCCCCCCcCCcCCHHHHHHHHHHHhccccCCcEEEEEecCCHHHHHHHHHHhhhcCccEEEEccc
Confidence 3567888887763 22211 111 223445555 55689999999999999888888875356888875443
No 141
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=39.01 E-value=1.4e+02 Score=26.44 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=45.7
Q ss_pred hHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcCCCc-eEEEEcCCChHHHHHHHhhc
Q 011290 130 LDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~~~d-~IV~vGGDGtl~EVvnGL~~ 188 (489)
.+++...|+..|++|++... ..+....+++++++..+.+ .|++.||.+-|--|+-++..
T Consensus 27 ~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 89 (170)
T 1xmp_A 27 MKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKTN 89 (170)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccC
Confidence 36788899999999998875 3356677888877655566 46677999999999988864
No 142
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=39.00 E-value=81 Score=28.43 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=41.3
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCC
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDG 177 (489)
.+.+.|++.-.+.. --.+++ +-++..+++.|+.+.+..+.. .....++.+.+...+.|+||+.+.+.
T Consensus 2 s~~Igvi~~~~~~~-~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 69 (255)
T 1byk_A 2 DKVVAIIVTRLDSL-SENLAV-QTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFTG 69 (255)
T ss_dssp CCEEEEEESCTTCH-HHHHHH-HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCEEEEEeCCCCCc-cHHHHH-HHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCcc
Confidence 45666766432211 112222 456777888899887776653 33334566777667899999998753
No 143
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=38.97 E-value=24 Score=34.87 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=43.6
Q ss_pred cEEEEEEcCCCCCcc-ccccchHhHHHHHHhCCCcEEEEEeC----------ChhHHHHHHHHhhcCCCceEEEE-cCCC
Q 011290 110 KRLYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETT----------QQLHAKEIVKVLDLSKYDGIVCV-SGDG 177 (489)
Q Consensus 110 kr~lviiNP~sG~~~-a~~~~~~~v~p~l~~a~i~~~v~~T~----------~~~ha~el~~~~~~~~~d~IV~v-GGDG 177 (489)
..-.-||.|.|+-.. ....+ +.....|+..|.++.+-.+- .+..|.++.+.+.....|+|+|+ ||+|
T Consensus 13 GD~I~ivaPSs~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 91 (336)
T 3sr3_A 13 GDTIGIYSPSSPVTYTSPKRF-ERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIGGMN 91 (336)
T ss_dssp TCEEEEECSSSCHHHHCHHHH-HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCCCSC
T ss_pred CCEEEEEeCCCCccccCHHHH-HHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcccccc
Confidence 345678899887531 22335 46677899999887654321 22346666666666677877764 8899
Q ss_pred h
Q 011290 178 I 178 (489)
Q Consensus 178 t 178 (489)
+
T Consensus 92 ~ 92 (336)
T 3sr3_A 92 S 92 (336)
T ss_dssp G
T ss_pred H
Confidence 6
No 144
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=38.94 E-value=1.5e+02 Score=26.58 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=46.4
Q ss_pred hHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcCCCc-eEEEEcCCChHHHHHHHhhc
Q 011290 130 LDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVNGLLE 188 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~~~d-~IV~vGGDGtl~EVvnGL~~ 188 (489)
.+++...|+..|+++++... ..+....++++++...+.+ .|++.|+.+-|--|+-++..
T Consensus 29 ~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 91 (183)
T 1o4v_A 29 MKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITH 91 (183)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhccC
Confidence 36788899999999998775 3356677888887655566 46677999999999999865
No 145
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=38.88 E-value=65 Score=29.82 Aligned_cols=89 Identities=12% Similarity=0.065 Sum_probs=44.4
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE-EeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~-~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
++.+++.+++. .....--.. +.+-++..+++.|+++.+. .+.. .....++++.+...++|+||+++.+.. .+.+.
T Consensus 6 ~~~~~Ig~i~~-~~~~~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 82 (290)
T 3clk_A 6 KSSNVIAAVVS-SVRTNFAQQ-ILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQ 82 (290)
T ss_dssp --CCEEEEECC-CCSSSHHHH-HHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC-----CHH
T ss_pred ccCCEEEEEeC-CCCChHHHH-HHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHH
Confidence 34556666653 322211122 2245677788888887766 4432 222334566666678999999988754 24455
Q ss_pred HhhcCcCccccCCCcEEEecC
Q 011290 185 GLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 185 GL~~~~~~~~~~~~plgiIP~ 205 (489)
.+... .+|+-.+-.
T Consensus 83 ~l~~~-------~iPvV~~~~ 96 (290)
T 3clk_A 83 LLQSS-------DVPYCFLSM 96 (290)
T ss_dssp HHHCC---------CEEEESC
T ss_pred HHHhC-------CCCEEEEcC
Confidence 44332 677766644
No 146
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=38.07 E-value=1.6e+02 Score=26.06 Aligned_cols=73 Identities=14% Similarity=0.081 Sum_probs=52.1
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcCCCce-EEEEcCCChHHHHHHHh
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGL 186 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~~~d~-IV~vGGDGtl~EVvnGL 186 (489)
++.||. |+..-..+ .+++...|+..|++|++... ..+.+..++++++...+.++ |++.|+.+-|--++-++
T Consensus 8 ~V~Iim----gS~SD~~v-~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 82 (169)
T 3trh_A 8 FVAILM----GSDSDLST-METAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTIAAH 82 (169)
T ss_dssp EEEEEE----SCGGGHHH-HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHHHHT
T ss_pred cEEEEE----CcHHhHHH-HHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhc
Confidence 455664 33223333 36788899999999998775 33566778888877666664 56678999999999988
Q ss_pred hc
Q 011290 187 LE 188 (489)
Q Consensus 187 ~~ 188 (489)
..
T Consensus 83 t~ 84 (169)
T 3trh_A 83 TL 84 (169)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 147
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=37.86 E-value=35 Score=30.74 Aligned_cols=46 Identities=20% Similarity=0.393 Sum_probs=34.4
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCC-ChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 153 LHAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 153 ~ha~el~~~~~~~~~d~IV~vGGD-Gtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
..|+++.+.+...++ .||.-||. |..-.+..|.++.. ...+|++|.
T Consensus 20 ~~A~~lg~~La~~g~-~lV~GGg~~GiM~aa~~gA~~~g------G~~iGv~p~ 66 (191)
T 1t35_A 20 RKAAELGVYMAEQGI-GLVYGGSRVGLMGTIADAIMENG------GTAIGVMPS 66 (191)
T ss_dssp HHHHHHHHHHHHTTC-EEEECCCCSHHHHHHHHHHHTTT------CCEEEEEET
T ss_pred HHHHHHHHHHHHCCC-EEEECCCcccHHHHHHHHHHHcC------CeEEEEeCc
Confidence 457777787765544 45666666 99999999988763 578999998
No 148
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=37.77 E-value=1.1e+02 Score=26.88 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=45.5
Q ss_pred hHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcC-CCce-EEEEcCCChHHHHHHHhhcC
Q 011290 130 LDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLS-KYDG-IVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~-~~d~-IV~vGGDGtl~EVvnGL~~~ 189 (489)
.+++...|+..|++|++... ..+.+..++++++... +.++ |++.|+.+-|--++-++...
T Consensus 18 ~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~t~~ 82 (159)
T 3rg8_A 18 AEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGFVKG 82 (159)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHHSSS
T ss_pred HHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhccCC
Confidence 36788899999999998775 3355667788877653 4665 55668999999999998653
No 149
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=37.72 E-value=22 Score=40.00 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=36.1
Q ss_pred HHHHHhhcCCCceEEEEcCCChHHHHHHHhh-----------c-----CcCccccCCCcEEEecCcCCCCccccccee
Q 011290 157 EIVKVLDLSKYDGIVCVSGDGILVEVVNGLL-----------E-----REDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 157 el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~-----------~-----~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.+++.+...+.|.+|++|||||+.-+ +-|. + .........+++--||. ==-|+++.
T Consensus 267 ~~~~~L~~~gId~LvvIGGDGS~~gA-~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPk-----TIDNDl~g 338 (941)
T 3opy_B 267 KACKNMIDMGIDALIVCGGDGSLTGA-DRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVG-----SIDNDMSS 338 (941)
T ss_dssp HHHHHHHHHTCCEEEEEECHHHHHHH-HHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEE-----ESSCCCSS
T ss_pred HHHHHHHHcCCCEEEEeCCChhHHHH-HHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEee-----cccCCCCC
Confidence 34555655678999999999998754 2221 1 00111123688888998 66788875
No 150
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=37.64 E-value=1.4e+02 Score=27.78 Aligned_cols=89 Identities=10% Similarity=0.217 Sum_probs=54.7
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++.+.+.|++...+..-- ..+ .+-++..+++.|+.+.+..+... ....++++.+...++|+||+++.+..-.+.+..
T Consensus 13 ~~s~~Igvi~~~~~~~~~-~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 90 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVF-ADM-FSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAA 90 (303)
T ss_dssp ----CEEEEESCTTSTTH-HHH-HHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHH
T ss_pred CCCCEEEEEeCCCcChHH-HHH-HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHH
Confidence 345567777754332221 223 35677888889999888877653 334566777777889999999987763225555
Q ss_pred hhcCcCccccCCCcEEEecC
Q 011290 186 LLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~ 205 (489)
+.+ .+|+-.+-.
T Consensus 91 l~~--------~iPvV~i~~ 102 (303)
T 3kke_A 91 VLE--------GVPAVTINS 102 (303)
T ss_dssp HHT--------TSCEEEESC
T ss_pred HhC--------CCCEEEECC
Confidence 543 467666644
No 151
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=37.31 E-value=1.7e+02 Score=29.79 Aligned_cols=75 Identities=11% Similarity=0.025 Sum_probs=54.0
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcCCC-c-eEEEEcCCChHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKY-D-GIVCVSGDGILVEVVN 184 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~~~-d-~IV~vGGDGtl~EVvn 184 (489)
.++.||.= +..-..+ .+++...|+..|+++++... ..+.+..++++++...+. + .|+++||.|-|--|+-
T Consensus 266 ~~V~Ii~g----s~SD~~~-~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgvva 340 (425)
T 2h31_A 266 CRVVVLMG----STSDLGH-CEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMS 340 (425)
T ss_dssp CEEEEEES----CGGGHHH-HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHHHH
T ss_pred CeEEEEec----CcccHHH-HHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhHHh
Confidence 45777753 2222333 36788899999999998765 334667788888876666 3 5667799999999999
Q ss_pred HhhcC
Q 011290 185 GLLER 189 (489)
Q Consensus 185 GL~~~ 189 (489)
|+...
T Consensus 341 ~~t~~ 345 (425)
T 2h31_A 341 GNTAY 345 (425)
T ss_dssp HHCSS
T ss_pred ccCCC
Confidence 99753
No 152
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=37.18 E-value=1.2e+02 Score=29.88 Aligned_cols=73 Identities=7% Similarity=0.005 Sum_probs=44.8
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcC------CChHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG------DGILVE 181 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGG------DGtl~E 181 (489)
+.++++|++- |..|...++- +.+...+...+++++++..... ...++..++ .++|.||++.- -+.+..
T Consensus 255 ~~~kv~iiy~--S~~GnT~~la-~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~l--~~~D~iiigsP~y~~~~~~~~k~ 328 (414)
T 2q9u_A 255 CQKKVTVVLD--SMYGTTHRMA-LALLDGARSTGCETVLLEMTSS-DITKVALHT--YDSGAVAFASPTLNNTMMPSVAA 328 (414)
T ss_dssp CCSEEEEEEC--CSSSHHHHHH-HHHHHHHHHTTCEEEEEEGGGC-CHHHHHHHH--HTCSEEEEECCCBTTBCCHHHHH
T ss_pred cCCeEEEEEE--CCCchHHHHH-HHHHHHHHhCCCeEEEEEcCcC-CHHHHHHHH--HhCCEEEEEcCccCcCchHHHHH
Confidence 4678887774 4455666554 5788888888888877764332 233444454 37898888742 234445
Q ss_pred HHHHh
Q 011290 182 VVNGL 186 (489)
Q Consensus 182 VvnGL 186 (489)
++..+
T Consensus 329 fld~l 333 (414)
T 2q9u_A 329 ALNYV 333 (414)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 153
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=37.03 E-value=31 Score=31.48 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=34.0
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCC-ChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 153 LHAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 153 ~ha~el~~~~~~~~~d~IV~vGGD-Gtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
..|+++.+.+...++ .||.-||. |....+..|.++.. ...+|++|.
T Consensus 40 ~~A~~lg~~La~~g~-~lV~GGG~~GlM~a~~~gA~~~G------G~viGv~p~ 86 (199)
T 3qua_A 40 ELAAEVGSSIAARGW-TLVSGGGNVSAMGAVAQAARAKG------GHTVGVIPK 86 (199)
T ss_dssp HHHHHHHHHHHHTTC-EEEECCBCSHHHHHHHHHHHHTT------CCEEEEEEG
T ss_pred HHHHHHHHHHHHCCC-EEEECCCccCHHHHHHHHHHHcC------CcEEEEeCc
Confidence 345667777765444 46666776 99999999988763 578999998
No 154
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=36.86 E-value=44 Score=32.85 Aligned_cols=69 Identities=9% Similarity=0.068 Sum_probs=45.3
Q ss_pred CcEEEEEEcCCCCCcc-ccccchHhHHHHHHhCCCcEEEEEeC----------ChhHHHHHHHHhhcCCCceEEE-EcCC
Q 011290 109 PKRLYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETT----------QQLHAKEIVKVLDLSKYDGIVC-VSGD 176 (489)
Q Consensus 109 pkr~lviiNP~sG~~~-a~~~~~~~v~p~l~~a~i~~~v~~T~----------~~~ha~el~~~~~~~~~d~IV~-vGGD 176 (489)
+..-.-||.|.|+-.. ....+ +.....|+..|.++.+-.+- .+..|.++.+.+.....|+|+| .||+
T Consensus 11 ~GD~I~ivaPS~~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 89 (331)
T 4e5s_A 11 KGDEIRVISPSCSLSIVSTENR-RLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGGY 89 (331)
T ss_dssp TTCEEEEECSSSCGGGSCHHHH-HHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCS
T ss_pred CcCEEEEEeCCCCccccCHHHH-HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 3345678899987541 12335 46677899999887664322 2334667777766667888777 5889
Q ss_pred Ch
Q 011290 177 GI 178 (489)
Q Consensus 177 Gt 178 (489)
|+
T Consensus 90 g~ 91 (331)
T 4e5s_A 90 NS 91 (331)
T ss_dssp CG
T ss_pred cH
Confidence 96
No 155
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=36.86 E-value=26 Score=31.91 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=38.2
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcC-CChHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG-DGILVE 181 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGG-DGtl~E 181 (489)
.+.|++++-|..+ |...+...|+.+|.++.++.... . ..+ +.++|+||+-|| .|++.+
T Consensus 12 ~~~~i~~id~~~~--------~~~~~~~~l~~~G~~~~vv~~~~--~----~~~--l~~~DglIl~GG~p~~~~~ 70 (212)
T 2a9v_A 12 HMLKIYVVDNGGQ--------WTHREWRVLRELGVDTKIVPNDI--D----SSE--LDGLDGLVLSGGAPNIDEE 70 (212)
T ss_dssp CCCBEEEEEESCC--------TTCHHHHHHHHTTCBCCEEETTS--C----GGG--GTTCSEEEEEEECSCGGGT
T ss_pred ccceEEEEeCCCc--------cHHHHHHHHHHCCCEEEEEeCCC--C----HHH--HhCCCEEEECCCCCCCCcc
Confidence 3456777776543 22357778888998887776432 0 112 245999999999 787755
No 156
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=36.84 E-value=78 Score=29.11 Aligned_cols=69 Identities=14% Similarity=0.243 Sum_probs=36.5
Q ss_pred CCcEEEEEEcCCCC-CccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 108 RPKRLYIFVNPFGG-KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 108 rpkr~lviiNP~sG-~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
..+++.|| |.+. ..... -+...++..|+..|+++. .+....+.. +.+ .+.|+|++-||+ ....+..|
T Consensus 30 ~~~~i~iI--~~a~~~~~~~-~~~~~~~~al~~lG~~~~--~v~~~~d~~---~~l--~~ad~I~lpGG~--~~~~~~~l 97 (229)
T 1fy2_A 30 GRRSAVFI--PFAGVTQTWD-EYTDKTAEVLAPLGVNVT--GIHRVADPL---AAI--EKAEIIIVGGGN--TFQLLKES 97 (229)
T ss_dssp TCCEEEEE--CTTCCSSCHH-HHHHHHHHHHGGGTCEEE--ETTSSSCHH---HHH--HHCSEEEECCSC--HHHHHHHH
T ss_pred CCCeEEEE--ECCCCCCCHH-HHHHHHHHHHHHCCCEEE--EEeccccHH---HHH--hcCCEEEECCCc--HHHHHHHH
Confidence 34566665 6553 22222 345678889999997544 332222221 222 246777766644 44555544
Q ss_pred hc
Q 011290 187 LE 188 (489)
Q Consensus 187 ~~ 188 (489)
-+
T Consensus 98 ~~ 99 (229)
T 1fy2_A 98 RE 99 (229)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 157
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=36.76 E-value=32 Score=31.00 Aligned_cols=65 Identities=17% Similarity=0.106 Sum_probs=37.6
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChh-------H-----HHHHHHHhhcCCCceEEEEcCC
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-------H-----AKEIVKVLDLSKYDGIVCVSGD 176 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~-------h-----a~el~~~~~~~~~d~IV~vGGD 176 (489)
+++++|++-|..- ... + -.....|+.+|++++++-.+... + +..-..+++...||.|++.||.
T Consensus 2 ~~kV~ill~~g~~---~~e-~-~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~ 76 (205)
T 2ab0_A 2 SASALVCLAPGSE---ETE-A-VTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGI 76 (205)
T ss_dssp CCEEEEEECTTCC---HHH-H-HHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCH
T ss_pred CcEEEEEEcCCCc---HHH-H-HHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCc
Confidence 4678888887331 111 1 13456788899888776543320 0 0001123334679999999997
Q ss_pred Ch
Q 011290 177 GI 178 (489)
Q Consensus 177 Gt 178 (489)
+.
T Consensus 77 ~~ 78 (205)
T 2ab0_A 77 KG 78 (205)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 158
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=36.61 E-value=1.9e+02 Score=27.61 Aligned_cols=66 Identities=11% Similarity=0.091 Sum_probs=39.7
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh--hHHHHHHHHhhcCCCceEEEEcC
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ--LHAKEIVKVLDLSKYDGIVCVSG 175 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~--~ha~el~~~~~~~~~d~IV~vGG 175 (489)
+.+.+.|++.... ..--..++ +-++..+++.|+.+.+..+... ....+.++.+...++|+||+++.
T Consensus 60 ~~~~Igvi~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~ 127 (349)
T 1jye_A 60 QSLLIGVATSSLA-LHAPSQIV-AAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYP 127 (349)
T ss_dssp --CEEEEEESCTT-SHHHHHHH-HHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred CCCEEEEEeCCCC-cccHHHHH-HHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEecC
Confidence 4456666663222 11112223 4567788889998888776542 33345666766678999999864
No 159
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=36.55 E-value=53 Score=28.22 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=36.2
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG 174 (489)
+++|++-- ..|..+++- +.+...|...|++++++..... +..++...+ .++|.||+..
T Consensus 2 kv~IvY~S--~tGnT~~~A-~~ia~~l~~~g~~v~~~~~~~~-~~~~~~~~~--~~~d~ii~Gs 59 (161)
T 3hly_A 2 SVLIGYLS--DYGYSDRLS-QAIGRGLVKTGVAVEMVDLRAV-DPQELIEAV--SSARGIVLGT 59 (161)
T ss_dssp CEEEEECT--TSTTHHHHH-HHHHHHHHHTTCCEEEEETTTC-CHHHHHHHH--HHCSEEEEEC
T ss_pred EEEEEEEC--CChHHHHHH-HHHHHHHHhCCCeEEEEECCCC-CHHHHHHHH--HhCCEEEEEc
Confidence 46666643 344555544 6788888888998887765432 334454444 3588877764
No 160
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=36.49 E-value=1.7e+02 Score=26.11 Aligned_cols=73 Identities=11% Similarity=0.091 Sum_probs=52.7
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHHhhcCCCc-eEEEEcCCChHHHHHHHh
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~~~~~~~d-~IV~vGGDGtl~EVvnGL 186 (489)
++.||. |...-..+ .+++...|+..|++|++... ..+.+..++++++...+.+ .|++.||.+-|--|+-++
T Consensus 23 ~V~Iim----GS~SD~~v-~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 97 (182)
T 1u11_A 23 VVGIIM----GSQSDWET-MRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAW 97 (182)
T ss_dssp SEEEEE----SSGGGHHH-HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHH
T ss_pred EEEEEE----CcHHHHHH-HHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHhc
Confidence 477775 33323333 36788899999999998775 3456677788877655566 466779999999999998
Q ss_pred hc
Q 011290 187 LE 188 (489)
Q Consensus 187 ~~ 188 (489)
..
T Consensus 98 t~ 99 (182)
T 1u11_A 98 TR 99 (182)
T ss_dssp CS
T ss_pred cC
Confidence 65
No 161
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=36.43 E-value=70 Score=30.27 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=50.7
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE-eC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~-T~-~~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL 186 (489)
+++.|++ |..+..--.. ..+-++..+++.|+++.+.. ++ ......+.++.+...+.|+||+++-|.. +.+++..+
T Consensus 4 ~~Igvi~-~~~~~~~~~~-~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIP-KLVGVGFFTS-GGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEEC-SSSSSHHHHH-HHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEe-CCCCChHHHH-HHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 4555554 4443322122 22456667777888776542 32 2233345566666678999999998875 35666655
Q ss_pred hcCcCccccCCCcEEEecC
Q 011290 187 LEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (489)
... .+|+-.+-.
T Consensus 82 ~~~-------gipvV~~d~ 93 (316)
T 1tjy_A 82 MQR-------GVKILTWDS 93 (316)
T ss_dssp HHT-------TCEEEEESS
T ss_pred HHC-------cCEEEEecC
Confidence 543 677766643
No 162
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=36.37 E-value=69 Score=30.75 Aligned_cols=79 Identities=9% Similarity=-0.076 Sum_probs=51.0
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE-eCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~-T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
..+++.+|+.+...-+ ... .+.++..|+++|+++.... .....+....++++...+.|+|++.+-|.....++..+
T Consensus 148 g~~~iaii~~~~~~~~--~~~-~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~ 224 (366)
T 3td9_A 148 GAKRVVVFTDVEQDYS--VGL-SNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQA 224 (366)
T ss_dssp CCCEEEEEEETTCHHH--HHH-HHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCcHH--HHH-HHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHH
Confidence 3578999975433222 222 3567888999998764332 22223344556666567899999988887777888877
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
.+.
T Consensus 225 ~~~ 227 (366)
T 3td9_A 225 RQL 227 (366)
T ss_dssp HHT
T ss_pred HHc
Confidence 665
No 163
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=36.17 E-value=33 Score=37.85 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=36.8
Q ss_pred HHHHHhhcCCCceEEEEcCCChHHHH----------HHHhhcCc-----CccccCCCcEEEecCcCCCCccccccee
Q 011290 157 EIVKVLDLSKYDGIVCVSGDGILVEV----------VNGLLERE-----DWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 157 el~~~~~~~~~d~IV~vGGDGtl~EV----------vnGL~~~~-----~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
.+++.+...+.|.+|++|||||+.-+ ++-|.+.. .......+++--||. ==-|+++.
T Consensus 89 ~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPk-----TIDNDl~g 160 (766)
T 3o8o_B 89 LGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVG-----SIDNDMST 160 (766)
T ss_dssp HHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEB-----CTTCCCTT
T ss_pred HHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEec-----cccCCCCC
Confidence 34555555578999999999998743 22333310 011123688999999 66788875
No 164
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=36.08 E-value=30 Score=34.78 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=45.6
Q ss_pred CcEEEEEEcCCCCCcc-ccccchHhHHHHHHhCCCcEEEEEeC----------ChhHHHHHHHHhhcCCCceEEE-EcCC
Q 011290 109 PKRLYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETT----------QQLHAKEIVKVLDLSKYDGIVC-VSGD 176 (489)
Q Consensus 109 pkr~lviiNP~sG~~~-a~~~~~~~v~p~l~~a~i~~~v~~T~----------~~~ha~el~~~~~~~~~d~IV~-vGGD 176 (489)
+..-.-||.|.|+-.. ....+ +.....|+..|+++.+-.+- .+..|.++.+.+.....|+|+| .||+
T Consensus 42 ~GD~I~ivaPSs~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGGy 120 (371)
T 3tla_A 42 VGDTIGFFSSSAPATVTAKNRF-FRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGGD 120 (371)
T ss_dssp TTCEEEEECSSCCHHHHTHHHH-HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCCS
T ss_pred CcCEEEEEeCCCCccccCHHHH-HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 3446788899987532 23345 46677899999887654332 2234667766666667788777 5899
Q ss_pred Ch
Q 011290 177 GI 178 (489)
Q Consensus 177 Gt 178 (489)
|+
T Consensus 121 ga 122 (371)
T 3tla_A 121 NS 122 (371)
T ss_dssp CG
T ss_pred cH
Confidence 96
No 165
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=36.02 E-value=49 Score=29.32 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=37.8
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
+++||=|..| |...+...|+..|.++.++.... ...++...+.....|.+|+.||-|+..+
T Consensus 2 ~i~iiDn~~s--------~~~~i~~~l~~~G~~~~v~~~~~--~~~~i~~~l~~~~~~~iil~gGpg~~~~ 62 (192)
T 1i1q_B 2 DILLLDNIDS--------FTWNLADQLRTNGHNVVIYRNHI--PAQTLIDRLATMKNPVLMLSPGPGVPSE 62 (192)
T ss_dssp EEEEEECSCS--------SHHHHHHHHHHTTCEEEEEETTS--CSHHHHHHHTTCSSEEEEECCCSSCGGG
T ss_pred cEEEEECCcc--------HHHHHHHHHHHCCCeEEEEECCC--CHHHHHHHhhhccCCeEEECCCCcCchh
Confidence 5677766544 33456778888898887775432 1234434433223566999999988654
No 166
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=35.94 E-value=92 Score=29.61 Aligned_cols=108 Identities=15% Similarity=0.057 Sum_probs=60.7
Q ss_pred cCCCcEEEEEEcCCCC------CccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhc---CCCce-EEEEcC
Q 011290 106 FGRPKRLYIFVNPFGG------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDG-IVCVSG 175 (489)
Q Consensus 106 ~~rpkr~lviiNP~sG------~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~---~~~d~-IV~vGG 175 (489)
..+++++.+|||-..= ...+...=.+.++.+|+..|+++++..=-...+..+.++++.. ..+|. |+++-|
T Consensus 28 ~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~dh~~~d~~v~~~ls 107 (272)
T 1m72_A 28 NHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLT 107 (272)
T ss_dssp CSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEES
T ss_pred CCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCCEEEEEEcC
Confidence 3456778777775311 1222222236799999999999988876666777777766642 34564 333333
Q ss_pred CCh------------HHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 176 DGI------------LVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 176 DGt------------l~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
-|. +.++++-+-...-..-+.++.|-+|.| =-||.+..
T Consensus 108 HG~~~~i~~~D~~v~l~~i~~~f~~~~cpsL~gKPKlffiqA-----CRg~~~~~ 157 (272)
T 1m72_A 108 HGELGMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFFIQA-----CQGDRLDG 157 (272)
T ss_dssp CEETTEEECSSSEECTTHHHHTTSTTTCGGGTTSCEEEEEES-----CSSSBCBC
T ss_pred CCCCCEEEecCCcEEHHHHHHHhccccChhhcCCceEEEEeC-----CCCCcccC
Confidence 332 223333322111111123667888888 55666654
No 167
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=35.51 E-value=98 Score=28.98 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=43.6
Q ss_pred HhHHHHHHhCCCcEEEEEe-C-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQET-T-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T-~-~~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+-++..+++.|+++.+..+ + ......+.++.+...++|+||+.+.|.. +.+.+..+... .+|+-.+-.
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~~~~ 90 (313)
T 2h3h_A 20 QGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEM-------GIPVVTLDT 90 (313)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHT-------TCCEEEESS
T ss_pred HHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC-------CCeEEEeCC
Confidence 4567777788888776542 2 2333445666666678999999887754 34566655443 677766544
No 168
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=35.50 E-value=89 Score=29.83 Aligned_cols=78 Identities=10% Similarity=0.033 Sum_probs=50.0
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T--~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
.-+++.+|... ... +.. ..+.++..|++.|+++..... ....+....++++...+.|.|++.+.|.....+++.
T Consensus 138 g~~~ia~i~~~-~~~--g~~-~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~ 213 (368)
T 4eyg_A 138 GIKKVATLTSD-YAP--GND-ALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQ 213 (368)
T ss_dssp TCCEEEEEEES-SHH--HHH-HHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEEecC-chH--hHH-HHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHH
Confidence 35788888732 222 222 235677888999987643322 122234455566655678999998888888899998
Q ss_pred hhcC
Q 011290 186 LLER 189 (489)
Q Consensus 186 L~~~ 189 (489)
+.+.
T Consensus 214 ~~~~ 217 (368)
T 4eyg_A 214 FAER 217 (368)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8765
No 169
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=35.43 E-value=34 Score=31.63 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCceEEEEcCC-ChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 154 HAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 154 ha~el~~~~~~~~~d~IV~vGGD-Gtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
.|+++.+.+...++ .||+-||. |..-.+..|.++.. ...+|++|-
T Consensus 29 ~A~~lg~~LA~~g~-~lV~GGg~~GlM~aa~~gA~~~G------G~~iGv~p~ 74 (216)
T 1ydh_A 29 AAIELGNELVKRKI-DLVYGGGSVGLMGLISRRVYEGG------LHVLGIIPK 74 (216)
T ss_dssp HHHHHHHHHHHTTC-EEEECCCSSHHHHHHHHHHHHTT------CCEEEEEEG
T ss_pred HHHHHHHHHHHCCC-EEEECCCcccHhHHHHHHHHHcC------CcEEEEech
Confidence 45667777765454 56777787 99988888988763 578999986
No 170
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=35.41 E-value=1.1e+02 Score=29.10 Aligned_cols=65 Identities=11% Similarity=0.041 Sum_probs=41.4
Q ss_pred cCCCcEEEEEEcCCCC-------CccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhc---CCCceE
Q 011290 106 FGRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGI 170 (489)
Q Consensus 106 ~~rpkr~lviiNP~sG-------~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~---~~~d~I 170 (489)
..+|+++.+|||-..= ...+...=.+.++.+|+..|++++++.=-...+..+.++++.. ..+|.+
T Consensus 17 ~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~h~~~D~~ 91 (277)
T 1nw9_B 17 SMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELARQDHGALDCC 91 (277)
T ss_dssp CCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHHSCCTTCSEE
T ss_pred CCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhcccCCeE
Confidence 4567888888876532 1222222336789999999999888876666666666666532 346643
No 171
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=35.04 E-value=1e+02 Score=28.88 Aligned_cols=108 Identities=12% Similarity=0.079 Sum_probs=63.1
Q ss_pred CCCcEEEEEEcCCCC-------CccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhc---CCCce-EEEEcC
Q 011290 107 GRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDG-IVCVSG 175 (489)
Q Consensus 107 ~rpkr~lviiNP~sG-------~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~---~~~d~-IV~vGG 175 (489)
..++++.+|||-..= ...+...=.+.++.+|+..|+++++..=-...+..+.++++.. ..+|. |++.-|
T Consensus 13 ~~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~~~~~d~~v~~~ls 92 (250)
T 2j32_A 13 YPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLS 92 (250)
T ss_dssp SSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEES
T ss_pred CCCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEECC
Confidence 456777777775321 1222222236799999999999988876666667776666643 34563 334433
Q ss_pred CC------------hHHHHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceec
Q 011290 176 DG------------ILVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKS 219 (489)
Q Consensus 176 DG------------tl~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~s 219 (489)
-| -+.++++-+-...-..-+.++.|-+|.| =-||.+...
T Consensus 93 HG~~g~i~~~D~~v~l~~i~~~f~~~~cp~L~gKPKlf~iqA-----CRg~~~~~g 143 (250)
T 2j32_A 93 HGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQA-----CRGTELDCG 143 (250)
T ss_dssp CEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEES-----CSEEECBCC
T ss_pred CCCCCeEEecCCcEEHHHHHHHhccccChhHcCCCeEEEEec-----ccCCcccCC
Confidence 33 3445555443211111233677999999 677776553
No 172
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=35.03 E-value=49 Score=30.88 Aligned_cols=90 Identities=8% Similarity=0.121 Sum_probs=53.6
Q ss_pred CCCcEEEEEEc----CCCCCccccccchHhHHHHHHhCCCcEEEEEeCChh-HHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 107 GRPKRLYIFVN----PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 107 ~rpkr~lviiN----P~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~-ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
++.+.+.|++. |.....--..++ +-++..+++.|..+.+..+.... ...++.+.+...+.|+||+++.+.. .+
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~ 82 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVL-LGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN-DP 82 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHH-HHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT-CH
T ss_pred CCCcEEEEEeecCCcccccChHHHHHH-HHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC-hH
Confidence 45566777762 111111112223 56778888889887776655432 2345666676678999999987754 25
Q ss_pred HHHHhhcCcCccccCCCcEEEecC
Q 011290 182 VVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 182 VvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
.+.-|... .+|+-.+-.
T Consensus 83 ~~~~l~~~-------~iPvV~i~~ 99 (295)
T 3hcw_A 83 IKQMLIDE-------SMPFIVIGK 99 (295)
T ss_dssp HHHHHHHT-------TCCEEEESC
T ss_pred HHHHHHhC-------CCCEEEECC
Confidence 55555443 678766644
No 173
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=34.91 E-value=34 Score=26.94 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=23.7
Q ss_pred EeeEEecCCCHHHHHHHHHHHHHhhhhc
Q 011290 79 RKDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (489)
.+.+.|...++++.+.|.++|+..+.+.
T Consensus 76 ~r~~~l~A~s~~e~~~Wi~al~~~~~~~ 103 (107)
T 2cof_A 76 EELAKLEAKSSEEMGHWLGLLLSESGSG 103 (107)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHSSCS
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHcCC
Confidence 4568899999999999999999887543
No 174
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=34.85 E-value=35 Score=27.60 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=23.7
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhhc
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (489)
+.+.|...++++.+.|+++|+..+...
T Consensus 93 ~~~~f~A~s~~e~~~Wi~ai~~~~~~~ 119 (123)
T 1wjm_A 93 KEYLFQAKDEAEMSSWLRVVNAAIASG 119 (123)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence 578899999999999999999987654
No 175
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=34.55 E-value=1.1e+02 Score=29.26 Aligned_cols=28 Identities=7% Similarity=0.180 Sum_probs=23.0
Q ss_pred CCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 166 KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 166 ~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
..|.+|+.|| +|+.|++- ...|.-+||.
T Consensus 225 ~aDlvI~~gG-~T~~E~~~-----------~g~P~i~ip~ 252 (282)
T 3hbm_A 225 ESNKLIISAS-SLVNEALL-----------LKANFKAICY 252 (282)
T ss_dssp TEEEEEEESS-HHHHHHHH-----------TTCCEEEECC
T ss_pred HCCEEEECCc-HHHHHHHH-----------cCCCEEEEeC
Confidence 4689999999 99999875 3678888887
No 176
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=34.53 E-value=68 Score=30.31 Aligned_cols=109 Identities=12% Similarity=0.056 Sum_probs=58.7
Q ss_pred cCCCcEEEEEEcCCCC------CccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhc---CCCceEE-EEc-
Q 011290 106 FGRPKRLYIFVNPFGG------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIV-CVS- 174 (489)
Q Consensus 106 ~~rpkr~lviiNP~sG------~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~---~~~d~IV-~vG- 174 (489)
..+|+++.+|||-..= ...+...=.+.++.+|+..|+++++..=-...+..+.++++.. ..+|.+| ++-
T Consensus 16 ~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~v~~~ls 95 (259)
T 3sir_A 16 RHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSASQNHSDSDCILVAILS 95 (259)
T ss_dssp CSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHHTSCCTTEEEEEEEEEE
T ss_pred CCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEEec
Confidence 3456777777765321 1112222236799999999999998877777777776666643 3456433 333
Q ss_pred ---------CCChHH--HHHHHhhcCcCccccCCCcEEEecCcCCCCcccccceec
Q 011290 175 ---------GDGILV--EVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIKS 219 (489)
Q Consensus 175 ---------GDGtl~--EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~s 219 (489)
=||.+. ++++-+-...-..-+.++.|-||-| =-||.+...
T Consensus 96 HG~~g~i~~~D~~v~l~~i~~~f~~~~cpsL~gKPKlf~iQA-----CRG~~~~~g 146 (259)
T 3sir_A 96 HGEMGYIYAKDTQYKLDNIWSFFTANHCPSLAGKPKLFFIQA-----CQGDRLDGG 146 (259)
T ss_dssp CTTCCCCCCTTHHHHHHHTTGGGSTTTCGGGSSSCEEEEEEE-----ETTSCEEC-
T ss_pred CCCCCeEEeCCCcEEHHHHHHHhhhccCccccCCCCEEEEec-----CCCCcccCC
Confidence 344321 2222221111011123677888888 566666543
No 177
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=34.18 E-value=79 Score=28.69 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=46.2
Q ss_pred HhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHhhcCC-CceEEEEcCCC-hHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSK-YDGIVCVSGDG-ILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~~~~~-~d~IV~vGGDG-tl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+-++..+++.|+++.+..+. ......+.++.+...+ +|+||+.+-|. ...+.+..+... .+|+-.+-.
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~~-------~ipvV~~~~ 92 (276)
T 3ksm_A 20 LGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRAR-------NIPVLVVDS 92 (276)
T ss_dssp HHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHT-------TCCEEEESS
T ss_pred HHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHC-------CCcEEEEec
Confidence 56778888889888777643 2223334566665567 99999999764 455677766654 688877755
No 178
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=34.05 E-value=57 Score=30.87 Aligned_cols=89 Identities=10% Similarity=0.093 Sum_probs=48.4
Q ss_pred CCcEEEEEEc-CCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 108 RPKRLYIFVN-PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 108 rpkr~lviiN-P~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
+...+.+++. +.+.+.--..++ +-++..+++.|+++.+..+... ....+.++.+...++|+||++|.. ..+.+..
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~--~~~~~~~ 80 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAY-EGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA--FAEYFST 80 (296)
T ss_dssp --CEEEEECCCC----CCTHHHH-HHHHHHHHHSCCEEEEECCCCSHHHHHHHHHHHHHTTCCEEEECSTH--HHHHHHT
T ss_pred CCcEEEEEECCCCCCCcHHHHHH-HHHHHHHHHhCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh--HHHHHHH
Confidence 3456777774 222211112233 4567788888988776655432 344456677766789999988642 3333333
Q ss_pred hhcCcCccccCCCcEEEec
Q 011290 186 LLEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiIP 204 (489)
+... ...+|+.++=
T Consensus 81 ~~~~-----~p~~p~v~id 94 (296)
T 2hqb_A 81 IHNQ-----YPDVHFVSFN 94 (296)
T ss_dssp TTTS-----CTTSEEEEES
T ss_pred HHHH-----CCCCEEEEEe
Confidence 3221 1256777763
No 179
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=33.77 E-value=1.2e+02 Score=29.50 Aligned_cols=78 Identities=8% Similarity=-0.029 Sum_probs=46.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC--ChhHHHHHHHH--hhcCCCceEEEEcCCChHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKV--LDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~--~~~ha~el~~~--~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
.+++.+|..+... .+... .+.++..|+++|+++.....- ...+....+.+ +...+.|.|++.+-......++.
T Consensus 141 ~~~iaii~~~~~~--~g~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~ 217 (391)
T 3eaf_A 141 QGKLALAYDSKVA--YSRSP-IGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREMLAADPDYVWCGNTISSCSLLGR 217 (391)
T ss_dssp SEEEEEEECTTCH--HHHTT-HHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH
T ss_pred CCEEEEEEecCCh--hHHHH-HHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHH
Confidence 5789999875222 22322 357788899999876443332 22345566666 66678897766543244555566
Q ss_pred HhhcC
Q 011290 185 GLLER 189 (489)
Q Consensus 185 GL~~~ 189 (489)
.+.+.
T Consensus 218 ~~~~~ 222 (391)
T 3eaf_A 218 AMAKV 222 (391)
T ss_dssp HHHHH
T ss_pred HHHHC
Confidence 55443
No 180
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=33.24 E-value=1.7e+02 Score=26.87 Aligned_cols=66 Identities=9% Similarity=0.174 Sum_probs=45.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.+++.|+-.+.-- ..++.+-+.-+++++.+.-...+++.+.++++...+++.|| ||++..+.+..+
T Consensus 106 ~~kIavVg~~~~~---------~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVV---G~~~~~~~A~~~ 171 (225)
T 2pju_A 106 TSSIGVVTYQETI---------PALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVV---GAGLITDLAEEA 171 (225)
T ss_dssp TSCEEEEEESSCC---------HHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEE---ESHHHHHHHHHT
T ss_pred CCcEEEEeCchhh---------hHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCCEEE---CCHHHHHHHHHc
Confidence 3567777554321 12333333345678888888999999999999888898866 588887777543
No 181
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=32.92 E-value=74 Score=28.34 Aligned_cols=62 Identities=10% Similarity=0.238 Sum_probs=41.6
Q ss_pred cEEEEEEcCCCC---Ccccccc--------chHhHHHHHH--hCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEE
Q 011290 110 KRLYIFVNPFGG---KKIASKI--------FLDDVKPLLE--DANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (489)
Q Consensus 110 kr~lviiNP~sG---~~~a~~~--------~~~~v~p~l~--~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~ 172 (489)
++++||-=|.-. ++. ..+ .++.++.... ..|++++.+.|.+++...+.+.++..+++|+||+
T Consensus 10 M~IlvlNGPNLNlLG~RE-P~iYG~~Tl~di~~~l~~~a~~~~~g~~l~~~QSN~EGeLId~Ih~a~~~~~dgIII 84 (176)
T 2c4w_A 10 MKILVIQGPNLNMLGHRD-PRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSEYEGIII 84 (176)
T ss_dssp EEEEEEECTTGGGBTTTB-CGGGTSCCHHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEE
T ss_pred cEEEEEcCCCccccCCCC-CCcCCcCCHHHHHHHHHHHhccccCCCEEEEEeeCcHHHHHHHHHHhccCCeeEEEE
Confidence 367777767543 222 112 2344555566 6788999999999999888888876444888774
No 182
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=32.87 E-value=34 Score=29.33 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=34.5
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCC-------------ceEEEEcCCChHHH
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKY-------------DGIVCVSGDGILVE 181 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~-------------d~IV~vGGDGtl~E 181 (489)
+.+..+|+++++.++++.+.....+.+.++.+..... -.++++-||--+++
T Consensus 5 ~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~~~~~lvvv~gd~~ld~ 68 (152)
T 3op6_A 5 KKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQLAKTVIIKMDGRLAMVVLPASDHITF 68 (152)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTCCHHHHC----CCSSCCEEEEEEEETTEEEEEEEETTCCCCH
T ss_pred HHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCCChhheEEEEEEEECCeEEEEEECCCCeECH
Confidence 4788999999999999988876666666665432211 15677888887774
No 183
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=32.84 E-value=73 Score=29.45 Aligned_cols=67 Identities=15% Similarity=0.033 Sum_probs=42.8
Q ss_pred HhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+-++..+++.|.++.+..+.. .....++++.+...++|+||+++.+.. .+.+..+... .+|+-.+-.
T Consensus 28 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~-------~iPvV~~~~ 95 (287)
T 3bbl_A 28 SSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYN-DPRVQFLLKQ-------KFPFVAFGR 95 (287)
T ss_dssp HHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTT-CHHHHHHHHT-------TCCEEEESC
T ss_pred HHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCC-cHHHHHHHhc-------CCCEEEECC
Confidence 456777888888776655432 222345666766678999999987654 2555555443 577766643
No 184
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=32.48 E-value=2.1e+02 Score=24.76 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=31.6
Q ss_pred HhHHHHHHhCCCcEEE--EEeCChhHHHHHHHHhhc-CCCceEEEEcCCCh
Q 011290 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDL-SKYDGIVCVSGDGI 178 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v--~~T~~~~ha~el~~~~~~-~~~d~IV~vGGDGt 178 (489)
..+...|++.|+++.. +.-+......+.++++.. .++|.||+.||=|.
T Consensus 34 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 84 (169)
T 1y5e_A 34 QLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGI 84 (169)
T ss_dssp HHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSS
T ss_pred HHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCC
Confidence 4678889999987543 333444444454454432 27999999999763
No 185
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=32.45 E-value=1.9e+02 Score=25.16 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=27.4
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGD 176 (489)
..+...|+.+|.++.++.... .. .++...++|+||+-||.
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~--~~----~~~~~~~~dglil~Gg~ 53 (189)
T 1wl8_A 14 HRIWRTLRYLGVETKIIPNTT--PL----EEIKAMNPKGIIFSGGP 53 (189)
T ss_dssp HHHHHHHHHTTCEEEEEETTC--CH----HHHHHTCCSEEEECCCS
T ss_pred HHHHHHHHHCCCeEEEEECCC--Ch----HHhcccCCCEEEECCCC
Confidence 457788899999887775432 11 22322469999999995
No 186
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=32.36 E-value=48 Score=29.25 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=36.4
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHH----------HHHHHhhcCCCceEEEEcCC
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAK----------EIVKVLDLSKYDGIVCVSGD 176 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~----------el~~~~~~~~~d~IV~vGGD 176 (489)
+.+||++|++-|..- ... + ......|+.+|++++++-.+..+... ....++....||.|++.||.
T Consensus 3 ~m~kkv~ill~~g~~---~~e-~-~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~ 77 (190)
T 4e08_A 3 HMSKSALVILAPGAE---EME-F-IIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGL 77 (190)
T ss_dssp -CCCEEEEEECTTCC---HHH-H-HHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCH
T ss_pred CCCcEEEEEECCCch---HHH-H-HHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCC
Confidence 345788888865321 111 1 13456788888888777544311000 00122233469999999995
Q ss_pred C
Q 011290 177 G 177 (489)
Q Consensus 177 G 177 (489)
+
T Consensus 78 ~ 78 (190)
T 4e08_A 78 G 78 (190)
T ss_dssp H
T ss_pred h
Confidence 3
No 187
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=31.87 E-value=83 Score=27.09 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=33.1
Q ss_pred hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEE
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~v 173 (489)
++.++......|++++.+.|.+++...+.+.++. .++|+||+-
T Consensus 31 ~~~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~-~~~dgiiiN 73 (143)
T 1gqo_A 31 ETDLFQFAEALHIQLTFFQSNHEGDLIDAIHEAE-EQYSGIVLN 73 (143)
T ss_dssp HHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHHT-TTCSEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhh-hcCcEEEEc
Confidence 3456666677899999999999999888888774 458887753
No 188
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=31.85 E-value=66 Score=26.90 Aligned_cols=67 Identities=25% Similarity=0.298 Sum_probs=40.8
Q ss_pred hHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc-CCCh-----HHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGI-----LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 132 ~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG-GDGt-----l~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
++...+...|++++..... ..-+.+|++.+...++|.||+.. |-+. +.-+.+.++.+. ++|+-++|.
T Consensus 87 ~~~~~~~~~g~~~~~~v~~-G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~------~~pVlvv~~ 159 (162)
T 1mjh_A 87 NIKKELEDVGFKVKDIIVV-GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKS------NKPVLVVKR 159 (162)
T ss_dssp HHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHC------CSCEEEECC
T ss_pred HHHHHHHHcCCceEEEEcC-CCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhC------CCCEEEEeC
Confidence 4555566778887655433 23456677777666888666542 2332 234555666542 789999987
No 189
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=31.84 E-value=1.2e+02 Score=28.65 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=47.2
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T--~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.+++.+|..+.. .+... .+.++..|++.|+++..... ....+....++++...+.|+|++.+.|.....++..+
T Consensus 138 ~~~i~~i~~~~~---~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~ 213 (346)
T 1usg_A 138 PQRIAIIHDKQQ---YGEGL-ARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQA 213 (346)
T ss_dssp CSSEEEEECSSH---HHHHH-HHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred CCeEEEEECCCc---hHHHH-HHHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHH
Confidence 467888876422 12222 24677788889987653222 2222334556666556789999887666666777777
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
.+.
T Consensus 214 ~~~ 216 (346)
T 1usg_A 214 RSV 216 (346)
T ss_dssp HHT
T ss_pred HHc
Confidence 654
No 190
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=31.82 E-value=1.3e+02 Score=27.68 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=48.2
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE-eC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~-T~-~~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL 186 (489)
+++.+++ |..+..--..+ .+-++..+++.|+++.++. +. ......+.++.+...++|+||+.+.|.. ..+.+..+
T Consensus 5 ~~Ig~i~-~~~~~~~~~~~-~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNIS-KVDGMPWFNRM-GEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEEC-SCSSCHHHHHH-HHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEe-ccCCChHHHHH-HHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 4444444 54433221222 2456777777887665433 32 2333345566665678999999888754 23455544
Q ss_pred hcCcCccccCCCcEEEecC
Q 011290 187 LEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (489)
... .+|+-.+-.
T Consensus 83 ~~~-------~ipvV~~~~ 94 (303)
T 3d02_A 83 RDA-------GIVVLTNES 94 (303)
T ss_dssp HHT-------TCEEEEESC
T ss_pred HHC-------CCeEEEEec
Confidence 443 577766543
No 191
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=31.77 E-value=1.4e+02 Score=27.24 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=41.8
Q ss_pred HhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEec
Q 011290 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiIP 204 (489)
+-++..+++.|.++.+..+... ....+.++.+...+.|+||+.+.|.. +.+.+..+... .+|+-.+=
T Consensus 21 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~i~ 89 (271)
T 2dri_A 21 DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQA-------NIPVITLD 89 (271)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHT-------TCCEEEES
T ss_pred HHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC-------CCcEEEec
Confidence 4567778888888777665432 22334556665578999999887643 23445545433 57776663
No 192
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=31.57 E-value=1.1e+02 Score=26.60 Aligned_cols=64 Identities=9% Similarity=0.120 Sum_probs=40.3
Q ss_pred CcEEEEEEcCCCCC--ccccccc--------hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEE
Q 011290 109 PKRLYIFVNPFGGK--KIASKIF--------LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (489)
Q Consensus 109 pkr~lviiNP~sG~--~~a~~~~--------~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~v 173 (489)
+++++|+-=|.-.- .+-+.+| ++.++....+.|++++.+.|.+++...+.+.++. +++|+||+-
T Consensus 4 m~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~-~~~dgiiIN 77 (151)
T 3u80_A 4 MTKVIVVNGPNLGRLGVRQPDVYGRQDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAA-DEKTPVVMN 77 (151)
T ss_dssp CEEEEEEECSCC------------CHHHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHH-HHTCCEEEE
T ss_pred CCEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh-hcCcEEEEC
Confidence 34677777776322 1112334 3455666666899999999999998888877764 357777753
No 193
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=31.33 E-value=1.1e+02 Score=29.75 Aligned_cols=111 Identities=12% Similarity=0.104 Sum_probs=59.3
Q ss_pred hhhcCC-CcEEEEEEcCCC-----CCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhc---C-CCceEEE
Q 011290 103 IDSFGR-PKRLYIFVNPFG-----GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---S-KYDGIVC 172 (489)
Q Consensus 103 ~~~~~r-pkr~lviiNP~s-----G~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~---~-~~d~IV~ 172 (489)
+.-..+ ++++.+|||-.. ....+...=.+.++.+|+..|++++++.=-...+..+.++++.. . .+|.+||
T Consensus 53 Y~m~~~~~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~~h~~~~D~~vv 132 (316)
T 2fp3_A 53 YKMQSRFNRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLTMVTSSSYVQNTECFVM 132 (316)
T ss_dssp CCCCCSSCSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEEEECSCCHHHHHHHHHHHHTSHHHHTCSCEEE
T ss_pred ccCCCCCCCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEccCCCHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 333345 778888887552 22333333346799999999998888765555666666665532 2 4563322
Q ss_pred -E--------------cCCCh---HHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 173 -V--------------SGDGI---LVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 173 -v--------------GGDGt---l~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
+ |=||. +.++++-+-...-..-+.++.|-+|.| ==||.+..
T Consensus 133 ~ilSHG~~~~g~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQA-----CRG~~~d~ 191 (316)
T 2fp3_A 133 VLMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQTAKCPYLVNKPKVLMFPF-----ARGDEYDL 191 (316)
T ss_dssp EEESCEECCTTCCEEECTTSCEEEHHHHHHTTSTTTCGGGTTSCEEEEESC-----C-------
T ss_pred EEccCCCccCCCCEEEeecCcEEeHHHHHHHhccccChhhcCCceEEEEec-----CCCCcccC
Confidence 2 22453 455555443321111123677899988 55666544
No 194
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=31.25 E-value=1.7e+02 Score=28.15 Aligned_cols=77 Identities=8% Similarity=0.009 Sum_probs=46.6
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE--EeC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~--~T~--~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvn 184 (489)
.+++.+|..+.. .+.... +.++..|+++|+++... ... ...+...+++++...+.|+|++.+.|.....++.
T Consensus 140 ~~~ia~i~~~~~---~~~~~~-~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~ 215 (385)
T 1pea_A 140 GERVVFIGSDYI---YPRESN-HVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYR 215 (385)
T ss_dssp CSEEEEEEESSH---HHHHHH-HHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHH
T ss_pred CcEEEEEeCCCh---HHHHHH-HHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHH
Confidence 378888875421 122222 46778888899876432 222 3344556666664457899888765556667777
Q ss_pred HhhcC
Q 011290 185 GLLER 189 (489)
Q Consensus 185 GL~~~ 189 (489)
.+.+.
T Consensus 216 ~~~~~ 220 (385)
T 1pea_A 216 AIARR 220 (385)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 76543
No 195
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=30.89 E-value=23 Score=29.46 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=23.4
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhhc
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (489)
++|.|...++++.+.|+++|+..+...
T Consensus 100 ~~yl~qA~s~~e~~~Wi~aI~~~i~~~ 126 (129)
T 2p0d_A 100 HEFLLQSDHETELRAWHRALRTVIERL 126 (129)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 578899999999999999999887643
No 196
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=30.87 E-value=1.2e+02 Score=24.06 Aligned_cols=65 Identities=12% Similarity=0.253 Sum_probs=35.5
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhh-cCCCceEEEEcCC
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD-LSKYDGIVCVSGD 176 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~-~~~~d~IV~vGGD 176 (489)
..++.|+....-..-.. -|-++++.+|+..|++++.+.......+.+.+.+.. ...+ -.|.++|.
T Consensus 17 ~~~Vvvy~k~t~~~p~C--p~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tv-P~ifi~g~ 82 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMC--GFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTF-PQLYIGGE 82 (109)
T ss_dssp SSSEEEEESBCSSSBSS--HHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSS-CEEEETTE
T ss_pred cCCEEEEEecCCCCCCC--hhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCC-CeEEECCE
Confidence 35677876521000011 155789999999999998887644334444333332 2222 24555553
No 197
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=30.83 E-value=1.1e+02 Score=29.64 Aligned_cols=108 Identities=15% Similarity=0.071 Sum_probs=62.3
Q ss_pred cCCCcEEEEEEcCCC------CCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhc---CCCceE-EEE--
Q 011290 106 FGRPKRLYIFVNPFG------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGI-VCV-- 173 (489)
Q Consensus 106 ~~rpkr~lviiNP~s------G~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~---~~~d~I-V~v-- 173 (489)
..+++++.+|||-.. ....+...=.+.++.+|+..|++++++.=-...+..+.++++.. ..+|.+ |++
T Consensus 56 ~~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~D~~vv~ilS 135 (310)
T 2nn3_C 56 NHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLT 135 (310)
T ss_dssp CSSBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHSSCGGGBSCEEEEEEE
T ss_pred CCCCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhccCCCCEEEEEEeC
Confidence 345677777777431 11222222336799999999999988876666777777776643 245533 333
Q ss_pred --------cCCCh--HHHHHHHhhcCcCccccCCCcEEEecCcCCCCccccccee
Q 011290 174 --------SGDGI--LVEVVNGLLEREDWNDAIKVPLGVVPADFLDAGTGNGMIK 218 (489)
Q Consensus 174 --------GGDGt--l~EVvnGL~~~~~~~~~~~~plgiIP~~~~~~GSgN~~a~ 218 (489)
|=||. +.++++-+-...-..-+.++.|-||.| =-||-+..
T Consensus 136 HG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQA-----CRG~~~d~ 185 (310)
T 2nn3_C 136 AGELGMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFFIQA-----CQGDRLDG 185 (310)
T ss_dssp EEETTEEECSSCEECTHHHHGGGSTTTCGGGTTSCEEEEEEE-----ECCCCCCC
T ss_pred CCCCCEEEecCCcEEHHHHHHHhccccChhhcCCceEEEEec-----ccCCcccc
Confidence 23443 334554443221111223677899988 66666654
No 198
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=30.77 E-value=83 Score=30.60 Aligned_cols=69 Identities=19% Similarity=0.146 Sum_probs=40.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~ 180 (489)
-.-+.|+-||-.-.|+++++....++..-.+.|+++. ..+...+ .++.+.+..-++|.||++|=--.|.
T Consensus 27 ~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~--~~~~~~~-~~~~~~l~~~~~Dliv~~~y~~ilp 95 (314)
T 1fmt_A 27 HNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVF--QPVSLRP-QENQQLVAELQADVMVVVAYGLILP 95 (314)
T ss_dssp CEEEEEECCCCBC------CBCCHHHHHHHHTTCCEE--CCSCSCS-HHHHHHHHHTTCSEEEEESCCSCCC
T ss_pred CcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEE--ecCCCCC-HHHHHHHHhcCCCEEEEeeccccCC
Confidence 3456788898665556666655678888899999862 2222211 2344555445789999998655543
No 199
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=30.74 E-value=35 Score=26.46 Aligned_cols=26 Identities=15% Similarity=0.462 Sum_probs=22.7
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (489)
+.+.|...++++...|.++|+..+..
T Consensus 81 r~~~l~a~s~~e~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 81 RTYEFTATSPAEARDWVDQISFLLKD 106 (108)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999988754
No 200
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=30.68 E-value=1.4e+02 Score=28.19 Aligned_cols=77 Identities=8% Similarity=-0.039 Sum_probs=45.9
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE--eCChhHHHHHHHHhhcCCCceEEEEcCCC-hHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVN 184 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~--T~~~~ha~el~~~~~~~~~d~IV~vGGDG-tl~EVvn 184 (489)
.-+++.+|. +... .+.... +.++..|+++|+++.... .....+....++++...+.|.|+++ +|+ ....++.
T Consensus 138 g~~~ia~i~-~~~~--~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~-~~~~~a~~~~~ 212 (358)
T 3hut_A 138 GFTSVAVIG-VTTD--WGLSSA-QAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLA-MAYEDAAPFLR 212 (358)
T ss_dssp TCCEEEEEE-ESSH--HHHHHH-HHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEE-SCHHHHHHHHH
T ss_pred CCCEEEEEe-cCcH--HHHHHH-HHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcCCCEEEEc-cCchHHHHHHH
Confidence 457888886 3222 222223 567888999999764332 1222233445555544578877766 455 7777888
Q ss_pred HhhcC
Q 011290 185 GLLER 189 (489)
Q Consensus 185 GL~~~ 189 (489)
.+.+.
T Consensus 213 ~~~~~ 217 (358)
T 3hut_A 213 ALRAR 217 (358)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77665
No 201
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=30.67 E-value=88 Score=27.72 Aligned_cols=62 Identities=5% Similarity=0.144 Sum_probs=42.8
Q ss_pred cEEEEEEcCCC---CCccccccc--------hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEE
Q 011290 110 KRLYIFVNPFG---GKKIASKIF--------LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (489)
Q Consensus 110 kr~lviiNP~s---G~~~a~~~~--------~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~v 173 (489)
++++||-=|.- |++. +.+| ++.++....+.|++++.+.+.+++...+.+.++. +++|+||+-
T Consensus 29 M~IlVLNGPNLNlLG~RE-P~iYG~~TL~dI~~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~-~~~dgIIIN 101 (172)
T 3n8k_A 29 LIVNVINGPNLGRLGRRE-PAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAA-DAAEPVILN 101 (172)
T ss_dssp CEEEEEECTTGGGTTTSC-HHHHCSCCHHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHH-HHTCCEEEE
T ss_pred CEEEEEcCCCccccCCCC-CCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh-hcCcEEEEC
Confidence 47888887873 2222 2233 3456666666899999999999998888877764 357777643
No 202
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=30.53 E-value=1.6e+02 Score=22.85 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=29.1
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE 157 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~e 157 (489)
+.++.|+.-|.-+ |-++++++|++.+++++.+.......+.+
T Consensus 15 ~~~v~vy~~~~Cp-------~C~~ak~~L~~~~i~y~~idI~~~~~~~~ 56 (99)
T 3qmx_A 15 SAKIEIYTWSTCP-------FCMRALALLKRKGVEFQEYCIDGDNEARE 56 (99)
T ss_dssp CCCEEEEECTTCH-------HHHHHHHHHHHHTCCCEEEECTTCHHHHH
T ss_pred CCCEEEEEcCCCh-------hHHHHHHHHHHCCCCCEEEEcCCCHHHHH
Confidence 4567777777553 44688999999999988776655444443
No 203
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=30.52 E-value=2.7e+02 Score=26.87 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE---eCChhHHHHHHHH
Q 011290 90 DSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKV 161 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~-rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~---T~~~~ha~el~~~ 161 (489)
+.++...+.+++.+..+ + +...+.+|.= |...|.+.|.+.-....++.|+.+..+. +..+.+..+.+++
T Consensus 13 ~ia~~i~~~~~~~v~~l~~~~~~~~P~Lavilv---g~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~ 89 (300)
T 4a26_A 13 AIAAAIRSELKDKVAALRELYGGRVPGLASIIV---GQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEK 89 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEE---SCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEEe---CCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45566666666654322 3 3334444332 4455677898888899999999987775 3445566666777
Q ss_pred hhcC-CCceEEE
Q 011290 162 LDLS-KYDGIVC 172 (489)
Q Consensus 162 ~~~~-~~d~IV~ 172 (489)
+..+ ..|+|++
T Consensus 90 lN~d~~v~GIlV 101 (300)
T 4a26_A 90 LNNDPNCHGIIV 101 (300)
T ss_dssp HHTCTTCCEEEE
T ss_pred hcCCCCCCEEEE
Confidence 7543 5666654
No 204
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=30.37 E-value=55 Score=29.70 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=33.5
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 153 ~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
..|+++++.+...++ .||.-|+-|..-.+..|.++.. ...+|+||.
T Consensus 45 ~~A~~lg~~LA~~G~-~vVsGg~~GiM~aa~~gAl~~G------G~~iGVlP~ 90 (195)
T 1rcu_A 45 DICLELGRTLAKKGY-LVFNGGRDGVMELVSQGVREAG------GTVVGILPD 90 (195)
T ss_dssp HHHHHHHHHHHHTTC-EEEECCSSHHHHHHHHHHHHTT------CCEEEEEST
T ss_pred HHHHHHHHHHHHCCC-EEEeCCHHHHHHHHHHHHHHcC------CcEEEEeCC
Confidence 346677777765565 4666677888888888887753 568999998
No 205
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=30.30 E-value=46 Score=30.66 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCCceEEEEcCC-ChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 154 HAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 154 ha~el~~~~~~~~~d~IV~vGGD-Gtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
.|+++++.+...++ .||.-||. |..-.+..|.++.. ...+|+||.
T Consensus 33 ~A~~lg~~LA~~G~-~vVsGGg~~GiM~aa~~gAl~~G------G~tiGVlP~ 78 (215)
T 2a33_A 33 AAVDLGNELVSRNI-DLVYGGGSIGLMGLVSQAVHDGG------RHVIGIIPK 78 (215)
T ss_dssp HHHHHHHHHHHTTC-EEEECCCSSHHHHHHHHHHHHTT------CCEEEEEES
T ss_pred HHHHHHHHHHHCCC-EEEECCChhhHhHHHHHHHHHcC------CcEEEEcch
Confidence 45667777765444 45666776 99988888888753 578999998
No 206
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=30.28 E-value=1.1e+02 Score=26.40 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=37.1
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIV 159 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~ 159 (489)
++++.|.|+++|-||..- .-.+.-.|...|.++-++....++......
T Consensus 1 M~vi~v~s~kgG~GKTt~--a~~la~~la~~g~~vlliD~D~~~~~~~~~ 48 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTA--VINIATALSRSGYNIAVVDTDPQMSLTNWS 48 (206)
T ss_dssp CEEEEECCSSTTSSHHHH--HHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CeEEEEEeCCCCccHHHH--HHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 367889999999998753 346777888899999888887777765543
No 207
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=30.19 E-value=52 Score=30.91 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=38.9
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~ 180 (489)
.|+++||-|..... . ..+.+.|+..|++++++..... +. + ..++.++|+||+-||-++..
T Consensus 3 ~~~vliiqh~~~e~------~-~~i~~~l~~~G~~v~v~~~~~~-~~--~--p~~~~~~d~lIl~GGp~~~~ 62 (250)
T 3m3p_A 3 LKPVMIIQFSASEG------P-GHFGDFLAGEHIPFQVLRMDRS-DP--L--PAEIRDCSGLAMMGGPMSAN 62 (250)
T ss_dssp CCCEEEEESSSSCC------C-HHHHHHHHHTTCCEEEEEGGGT-CC--C--CSCGGGSSEEEECCCSSCTT
T ss_pred CCeEEEEECCCCCC------H-HHHHHHHHHCCCeEEEEeccCC-Cc--C--cCccccCCEEEECCCCCccc
Confidence 46799998754321 1 3577889999999888764321 10 0 01235799999999987643
No 208
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=29.72 E-value=91 Score=28.66 Aligned_cols=66 Identities=12% Similarity=0.268 Sum_probs=41.9
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCc-EEEEEeCCh-hHHHHHHHHhhcCCCceEEEEc
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQ-FTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~-~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vG 174 (489)
++.+.+.|++...+..- -..+ .+-++..+++.|+. +.+..+... ....++++.+...++|+||+++
T Consensus 8 ~~~~~Igvi~~~~~~~~-~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRF-YAQI-IDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCCEEEEEESCTTSHH-HHHH-HHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCEEEEEeCCCCChh-HHHH-HHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 45566777775433221 1222 35677888889998 777665542 2334556677667899999998
No 209
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=29.70 E-value=2e+02 Score=27.31 Aligned_cols=93 Identities=12% Similarity=0.106 Sum_probs=61.5
Q ss_pred cCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhh----cCCCceEEE---------
Q 011290 106 FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD----LSKYDGIVC--------- 172 (489)
Q Consensus 106 ~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~----~~~~d~IV~--------- 172 (489)
..+|+.+.+|||-.. .. - +.++.+|+..|++++++.=-...+..+.++++. ...+|.+||
T Consensus 39 ~~~~rG~~LIinn~~--~D----~-~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~dh~~~d~~v~~ilSHG~~g 111 (272)
T 3h11_A 39 KSKPLGICLIIDCIG--NE----T-ELLRDTFTSLGYEVQKFLHLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGGSQ 111 (272)
T ss_dssp CCSSSEEEEEEESSC--CC----C-SHHHHHHHHHTEEEEEEESCBHHHHHHHHHHHHTCGGGGGCSEEEEEEEEEEETT
T ss_pred CCCcceEEEEECCch--HH----H-HHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHhccccCCCCEEEEEEEcCCCCC
Confidence 356778888888642 11 1 468999999999988887666666666666653 235776543
Q ss_pred --EcCCCh-----HHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 173 --VSGDGI-----LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 173 --vGGDGt-----l~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
.|=||. +.++.+-+-...-..-+.++.|-+|.|
T Consensus 112 ~i~g~D~~~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQA 151 (272)
T 3h11_A 112 SVYGVDQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFFIQN 151 (272)
T ss_dssp EECBTSCCSSCEEHHHHHHHHSTTTCGGGTTSCEEEEEEE
T ss_pred eEEEEcCCcceEeHHHHHHHhccccChhhcCCCcEEEEEC
Confidence 456886 778887775532112223677888888
No 210
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=29.44 E-value=80 Score=29.49 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=45.3
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhH-HHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~h-a~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+-++..+++.|..+.+..+..... ..++.+.+...+.|+||+++.+.. .+.+..+... .+|+-.+=.
T Consensus 47 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~-------~iPvV~i~~ 114 (305)
T 3huu_A 47 NGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKD-DPIEHLLNEF-------KVPYLIVGK 114 (305)
T ss_dssp HHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTT-CHHHHHHHHT-------TCCEEEESC
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCC-cHHHHHHHHc-------CCCEEEECC
Confidence 457777888898887776654332 345666666678999999987654 2556655443 678777655
No 211
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=29.41 E-value=44 Score=26.78 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.2
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhhc
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (489)
+.+.|...++++.+.|+++|+..+...
T Consensus 87 r~~~l~a~s~~e~~~W~~al~~~i~~~ 113 (125)
T 1eaz_A 87 RTFYVQADSPEEMHSWIKAVSGAIVAQ 113 (125)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 568899999999999999999987643
No 212
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=29.40 E-value=1.5e+02 Score=30.46 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=50.4
Q ss_pred HHHHH-HHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC-----------ChhHHHH
Q 011290 90 DSKRL-WCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-----------QQLHAKE 157 (489)
Q Consensus 90 ~~~~~-w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~-----------~~~ha~e 157 (489)
+.... |.+.+.+.+... ..+++.|++++..|.+. ..+..+|+..|+++..+..+ .+.+...
T Consensus 157 d~~~~~Yi~~~~~~~~~~-~~~~lkivvd~~~Ga~~------~~~~~~l~~lG~~v~~l~~~~~f~~~~~~p~~~e~l~~ 229 (481)
T 4hjh_A 157 DAALQAYADRYAGFLGKG-SLNGLRVGVYQHSSVAR------DLLMYLLTTLGVEPVALGRSDIFVPVDTEALRPEDIAL 229 (481)
T ss_dssp CHHHHHHHHHHHHHHCTT-TTTTCEEEEEEETCTTH------HHHHHHHHHTTCEEEEEEECSSCCCCCTTSCCHHHHHH
T ss_pred cccHHHHHHHHHHhcCcc-cccCCEEEEECCCChHH------HHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCHHHHHH
Confidence 34556 788777776432 22456777888655442 35778899999987655321 2334445
Q ss_pred HHHHhhcCCCceEEEEcCCC
Q 011290 158 IVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 158 l~~~~~~~~~d~IV~vGGDG 177 (489)
+.+.+...+.|..++.=|||
T Consensus 230 l~~~v~~~~aDlgia~DgDa 249 (481)
T 4hjh_A 230 LAQWGKSDRLDAIVSTDGDA 249 (481)
T ss_dssp HHHHHTSTTCSEEEEECTTS
T ss_pred HHHHHHhcCCCEEEEECCCC
Confidence 55555556777777777777
No 213
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=29.25 E-value=40 Score=32.65 Aligned_cols=63 Identities=13% Similarity=0.305 Sum_probs=38.7
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCC-cEEEEEeCChhHH--HHHHHHhhcCCCceEEEEcCCCh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHA--KEIVKVLDLSKYDGIVCVSGDGI 178 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i-~~~v~~T~~~~ha--~el~~~~~~~~~d~IV~vGGDGt 178 (489)
++++|| |.+... .. .+.+..+..|+..|+ ++++.......++ .++++.+. +.|+|++.|||=+
T Consensus 57 ~~I~~I--ptAs~~-~~-~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~ 122 (291)
T 3en0_A 57 AIIGII--PSASRE-PL-LIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQL 122 (291)
T ss_dssp CEEEEE--CTTCSS-HH-HHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHH
T ss_pred CeEEEE--eCCCCC-hH-HHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHH
Confidence 455554 544432 22 244677889999999 6777666443322 23444443 5799999999963
No 214
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=29.21 E-value=87 Score=30.48 Aligned_cols=68 Identities=19% Similarity=0.122 Sum_probs=38.7
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~ 180 (489)
.-+.|+-+|-.-.|++.+....-|+..-.+.|+.+ +..+...+ .++.+.+..-++|.||++|=--.|.
T Consensus 27 ~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv--~~~~~~~~-~~~~~~l~~~~~Dliv~~~~~~ilp 94 (314)
T 3tqq_A 27 RVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPI--IQPFSLRD-EVEQEKLIAMNADVMVVVAYGLILP 94 (314)
T ss_dssp EEEEEECCCC----------CCHHHHHHHHTTCCE--ECCSCSSS-HHHHHHHHTTCCSEEEEESCCSCCC
T ss_pred eEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCE--ECcccCCC-HHHHHHHHhcCCCEEEEcCcccccC
Confidence 45778888876666666665567888888999984 33332222 2455566556899999988655553
No 215
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=29.13 E-value=2.2e+02 Score=27.80 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=37.0
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG 174 (489)
.++++|++-- ..|..+++- +.+...+...|++++++..... ...++...+ .++|.||++.
T Consensus 252 ~~kv~i~y~S--~~Gnt~~lA-~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~~--~~~d~ii~gs 311 (402)
T 1e5d_A 252 TNKVVIFYDS--MWHSTEKMA-RVLAESFRDEGCTVKLMWCKAC-HHSQIMSEI--SDAGAVIVGS 311 (402)
T ss_dssp CSEEEEEECC--SSSHHHHHH-HHHHHHHHHTTCEEEEEETTTS-CHHHHHHHH--HTCSEEEEEC
T ss_pred CCcEEEEEEC--CChhHHHHH-HHHHHHHHhCCCeEEEEECCCC-CHHHHHHHH--HHCCEEEEEC
Confidence 4677777743 445555433 5677778778887777765432 334454444 3688888775
No 216
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=29.03 E-value=43 Score=26.89 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=23.7
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhhc
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (489)
+.+.|...++++.+.|.++|+..+...
T Consensus 96 r~~~l~a~s~~e~~~Wi~al~~~i~~~ 122 (127)
T 1fgy_A 96 VVYRISAPSPEEKEEWMKSIKASISRD 122 (127)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCCHHHHHHHHHHHHHHhccC
Confidence 578899999999999999999988654
No 217
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.98 E-value=40 Score=26.69 Aligned_cols=26 Identities=12% Similarity=0.417 Sum_probs=22.6
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (489)
+.+.|...++++.+.|.++|+..+..
T Consensus 85 r~~~l~a~s~~e~~~Wi~al~~~~~~ 110 (117)
T 2d9y_A 85 RTYFFSAESPEEQEAWIQAMGEAARV 110 (117)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHhh
Confidence 56889999999999999999988753
No 218
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=28.68 E-value=85 Score=32.35 Aligned_cols=50 Identities=10% Similarity=0.128 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEE
Q 011290 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~ 147 (489)
+....|.+.+.+.+.. +.+++-|+++|..|.+. ..+..+|+..|+++..+
T Consensus 175 d~~~~Y~~~l~~~~~~--~~~~lkivvD~~nG~~~------~~~~~ll~~lG~~v~~l 224 (469)
T 3pdk_A 175 EGGQKYLQYIKQTVEE--DFSGLHIALDCAHGATS------SLAPYLFADLEADISTM 224 (469)
T ss_dssp HHHHHHHHHHHTTCSS--CCTTCEEEEECTTSTTT------THHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHHHhcCc--ccCCCEEEEECCCchHH------HHHHHHHHHcCCEEEEE
Confidence 4566788877776642 34568899999988764 24677889999977654
No 219
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=28.61 E-value=46 Score=29.53 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=36.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChh----------HHHHHHHHh-hcCCCceEEEEcCCC
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL----------HAKEIVKVL-DLSKYDGIVCVSGDG 177 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~----------ha~el~~~~-~~~~~d~IV~vGGDG 177 (489)
++++.|++-|..- ... + ......|+.++++++++-.+... .+.....++ +...||.|++.||.+
T Consensus 3 ~~~v~ill~~g~~---~~e-~-~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~ 77 (197)
T 2rk3_A 3 SKRALVILAKGAE---EME-T-VIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL 77 (197)
T ss_dssp CCEEEEEECTTCC---HHH-H-HHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHH
T ss_pred CCEEEEEECCCCc---HHH-H-HHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCch
Confidence 4678888766321 111 1 13456788888887776533210 000011233 346899999999975
Q ss_pred h
Q 011290 178 I 178 (489)
Q Consensus 178 t 178 (489)
.
T Consensus 78 ~ 78 (197)
T 2rk3_A 78 G 78 (197)
T ss_dssp H
T ss_pred h
Confidence 3
No 220
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=28.53 E-value=1.2e+02 Score=24.32 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=40.9
Q ss_pred HhHHHHHHhCCCcE-EEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHH---HHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQF-TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV---EVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~-~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~---EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.++.+.+..|+++ +.... ...-+.+|++.+...++|.||+..--|.+. .+.+.++.+ .++|+-++|.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~lgs~~~~vl~~------~~~pVlvv~~ 138 (141)
T 1jmv_A 67 KALLDLAESVDYPISEKLSG-SGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNT------IKIDMLVVPL 138 (141)
T ss_dssp HHHHHHHHHSSSCCCCEEEE-EECHHHHHHHHHHHTTCCEEEEEECCCCHHHHHHHHHHHHTT------CCSEEEEEEC
T ss_pred HHHHHHHHHcCCCceEEEEe-cCCHHHHHHHHHHhcCCCEEEEeCCCchhhhhcchHHHHHhc------CCCCEEEeeC
Confidence 45566666677764 22221 223355677766667889877765434443 355556655 2789999987
No 221
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=28.13 E-value=91 Score=32.31 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC-------------ChhHHHHH
Q 011290 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-------------QQLHAKEI 158 (489)
Q Consensus 92 ~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~-------------~~~ha~el 158 (489)
...|.+.|.+.++. .+++.|+++|..|.+. ..+..+|+..|+++.....+ .+....++
T Consensus 178 ~~~Yi~~l~~~i~~---~~~lkIvvD~~~Ga~~------~~~~~il~~lG~~v~~~~~~pDg~Fp~~~p~P~~~~~l~~l 248 (485)
T 3uw2_A 178 ADQYVERIVGDIKL---TRPLKLVVDAGNGVAG------PLATRLFKALGCELVELFTDIDGNFPNHHPDPAHPENLQDV 248 (485)
T ss_dssp HHHHHHHHHTTCCC---SSCCCEEEECTTSTHH------HHHHHHHHHTTCCEEEESCSCCTTCCSSCSCTTSGGGGHHH
T ss_pred HHHHHHHHHHhcCc---ccCCEEEEEcCCCcHH------HHHHHHHHHcCCeEEEecCccCCCCCCCCcCCCCHHHHHHH
Confidence 45677777666532 2468899999988653 34677899999986554322 12233333
Q ss_pred HHHhhcCCCceEEEEcCCC
Q 011290 159 VKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 159 ~~~~~~~~~d~IV~vGGDG 177 (489)
.+.+...++|..++.=|||
T Consensus 249 ~~~v~~~~aDlgia~DgDa 267 (485)
T 3uw2_A 249 IAKLKATDAEIGFAFDGDG 267 (485)
T ss_dssp HHHHHHSSCCEEEEECTTS
T ss_pred HHHHHhhCCCEEEEECCCC
Confidence 3443344566666666665
No 222
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=28.12 E-value=40 Score=27.08 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.4
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhhc
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (489)
+.+.|...++++++.|.++|+..+...
T Consensus 77 ~~y~f~A~s~ee~~~Wi~ai~~~~~~~ 103 (112)
T 3cxb_B 77 PCLELSAESEAEMAEWMQHLCQAVSKG 103 (112)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcc
Confidence 478899999999999999999887643
No 223
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=28.02 E-value=94 Score=29.64 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=43.1
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcC
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGG 175 (489)
++.+.+.|++...+..- -.. +.+-++..+++.|+.+.+..+.......++.+.+...++|+||+++.
T Consensus 62 ~~~~~Igvi~~~~~~~~-~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEY-YSE-SLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp --CCEEEEEESCSSSHH-HHH-HHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCCEEEEEeCCCcChH-HHH-HHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch
Confidence 34556777765433211 122 23567788888899988888877444456667776678999999876
No 224
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=27.96 E-value=22 Score=28.63 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=34.5
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ 152 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~ 152 (489)
|++.|.++|.+|..++.+-|.+.--|-|+..+-.+.+...+..
T Consensus 20 k~l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v~~~~ 62 (102)
T 1s3a_A 20 REIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECS 62 (102)
T ss_dssp EEEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEECCC
T ss_pred eEEEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEEEECC
Confidence 7899999999998888777767777888888887777766554
No 225
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=27.84 E-value=52 Score=29.03 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=35.9
Q ss_pred hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 152 QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 152 ~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
...|+++.+.+...++ .||.-||.|..-.+..|.++.. ...+|++|.
T Consensus 19 ~~~A~~lg~~La~~g~-~lV~Ggg~GiM~aa~~gAl~~g------G~tiGV~~~ 65 (171)
T 1weh_A 19 YARWVRYGEVLAEEGF-GLACGGYQGGMEALARGVKAKG------GLVVGVTAP 65 (171)
T ss_dssp HHHHHHHHHHHHHTTE-EEEECCSSTHHHHHHHHHHHTT------CCEEECCCG
T ss_pred HHHHHHHHHHHHHCCC-EEEeCChhhHHHHHHHHHHHcC------CcEEEEecc
Confidence 3457777888765544 6888899999999999988763 568899776
No 226
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=27.83 E-value=83 Score=26.80 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=45.2
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG---GDGtl~EVvnGL 186 (489)
++++|++= |..|..+++- +.+...+... +.++++.-.... ..++.+||.||++. ++|.+...+..+
T Consensus 1 ~kilIvY~--S~tGnT~~vA-~~ia~~l~~~-~~v~~~~~~~~~-------~~~l~~~d~ii~g~pty~~g~~p~~~~~f 69 (169)
T 1czn_A 1 AKIGLFYG--TQTGVTQTIA-ESIQQEFGGE-SIVDLNDIANAD-------ASDLNAYDYLIIGCPTWNVGELQSDWEGI 69 (169)
T ss_dssp CCEEEEEC--CSSSHHHHHH-HHHHHHHTST-TTEEEEEGGGCC-------GGGGGGCSEEEEECCEETTTEECHHHHHH
T ss_pred CeEEEEEE--CCCcHHHHHH-HHHHHHhCcc-cceEEEEhhhCC-------HhHHhhCCEEEEEecccCCCcCCHHHHHH
Confidence 35777774 4445555543 5677777654 566666533211 11345789888876 667666555444
Q ss_pred hcCcCccccCCCcEEEecC
Q 011290 187 LEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (489)
+..-........+++++-.
T Consensus 70 ~~~l~~~~l~gk~~~~f~t 88 (169)
T 1czn_A 70 YDDLDSVNFQGKKVAYFGA 88 (169)
T ss_dssp GGGGGGSCCTTCEEEEEEE
T ss_pred HHHhhhhccCCCEEEEEEE
Confidence 4421111122455555543
No 227
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=27.71 E-value=28 Score=33.16 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=33.1
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEE
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~v 173 (489)
.|+|+|++ .|.. ...-.+.+.++|+..+++++++.+..... ...++++||.||..
T Consensus 3 ~m~~vLiV----~g~~--~~~~a~~l~~aL~~~g~~V~~i~~~~~~~-----~~~~L~~yDvIIl~ 57 (259)
T 3rht_A 3 AMTRVLYC----GDTS--LETAAGYLAGLMTSWQWEFDYIPSHVGLD-----VGELLAKQDLVILS 57 (259)
T ss_dssp ---CEEEE----ESSC--TTTTHHHHHHHHHHTTCCCEEECTTSCBC-----SSHHHHTCSEEEEE
T ss_pred CCceEEEE----CCCC--chhHHHHHHHHHHhCCceEEEeccccccc-----ChhHHhcCCEEEEc
Confidence 36788887 2321 11123568889999999998876554311 11234689999987
No 228
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=27.62 E-value=2.6e+02 Score=24.34 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=42.8
Q ss_pred hHhHHHHHHhCCCcEEEEEeC---ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcC
Q 011290 130 LDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~---~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~ 189 (489)
.+++...|+..|++|++.... .+.+..+++++.+. -=.|++.|+.+-|--++-++...
T Consensus 15 ~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~--~ViIa~AG~aa~Lpgvva~~t~~ 75 (157)
T 2ywx_A 15 AEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA--DVFIAIAGLAAHLPGVVASLTTK 75 (157)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCC--SEEEEEEESSCCHHHHHHTTCSS
T ss_pred HHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCC--CEEEEEcCchhhhHHHHHhccCC
Confidence 367888999999999987753 34555666666542 23677889999999999988653
No 229
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=27.41 E-value=63 Score=28.68 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 112 ~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
++||=|..+- ...+...|+.+|.++.++.... .... +++..++|+||+-||-|...+
T Consensus 4 i~iid~~~s~--------~~~~~~~l~~~G~~~~v~~~~~-~~~~----~~~~~~~dglil~gG~~~~~~ 60 (195)
T 1qdl_B 4 TLIIDNYDSF--------VYNIAQIVGELGSYPIVIRNDE-ISIK----GIERIDPDRLIISPGPGTPEK 60 (195)
T ss_dssp EEEEECSCSS--------HHHHHHHHHHTTCEEEEEETTT-SCHH----HHHHHCCSEEEECCCSSCTTS
T ss_pred EEEEECCCch--------HHHHHHHHHhCCCEEEEEeCCC-CCHH----HHhhCCCCEEEECCCCCChhh
Confidence 6777765442 2356778899999888776532 1121 222226899999888665543
No 230
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=27.34 E-value=88 Score=27.00 Aligned_cols=43 Identities=2% Similarity=0.050 Sum_probs=32.6
Q ss_pred hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEE
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~v 173 (489)
++.++......|++++.+.|.+++...+.+.++.. ++|+||+-
T Consensus 33 ~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~-~~dgiiIN 75 (146)
T 1h05_A 33 VALIEREAAELGLKAVVRQSDSEAQLLDWIHQAAD-AAEPVILN 75 (146)
T ss_dssp HHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHH-HTCCEEEE
T ss_pred HHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhh-cCcEEEEC
Confidence 34566666778999999999999988888777643 47777643
No 231
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=27.22 E-value=1.5e+02 Score=25.56 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=33.4
Q ss_pred EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE------eCChhHHHHHHHHhhcCCCce
Q 011290 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE------TTQQLHAKEIVKVLDLSKYDG 169 (489)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~------T~~~~ha~el~~~~~~~~~d~ 169 (489)
.+|-+-++|-. +.+.++..|+..|.++.-+= +.|+.-+..+++.+...+.|.
T Consensus 4 IaigsDhaG~~-----lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~ 61 (149)
T 2vvr_A 4 IAFGCDHVGFI-----LKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDG 61 (149)
T ss_dssp EEEEECTTGGG-----GHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSE
T ss_pred EEEEeCchhHH-----HHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCce
Confidence 46777777642 34678999999998765442 245666666666665444443
No 232
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=27.13 E-value=91 Score=27.83 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=44.0
Q ss_pred EEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHH---------------HhhcCCCceEEEEcCC
Q 011290 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK---------------VLDLSKYDGIVCVSGD 176 (489)
Q Consensus 112 ~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~---------------~~~~~~~d~IV~vGGD 176 (489)
+..|.|+++|-||..- .-.+...|...| ++-++....++.+..... .+ ...||.||+=.+-
T Consensus 2 vI~v~s~KGGvGKTT~--a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l-~~~yD~viiD~p~ 77 (209)
T 3cwq_A 2 IITVASFKGGVGKTTT--AVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKY-APKYQNIVIDTQA 77 (209)
T ss_dssp EEEEEESSTTSSHHHH--HHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHH-GGGCSEEEEEEEC
T ss_pred EEEEEcCCCCCcHHHH--HHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHh-hhcCCEEEEeCCC
Confidence 5778899999998753 346788888889 999998888877665432 23 2468877764443
Q ss_pred C
Q 011290 177 G 177 (489)
Q Consensus 177 G 177 (489)
|
T Consensus 78 ~ 78 (209)
T 3cwq_A 78 R 78 (209)
T ss_dssp C
T ss_pred C
Confidence 4
No 233
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=27.09 E-value=2e+02 Score=26.31 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=42.0
Q ss_pred HhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEe
Q 011290 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiI 203 (489)
+-++..+++.|+.+.+..+.. .....+.++.+...+.|+||+.+.|.. +.+.+..+.+. .+|+-.+
T Consensus 21 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~~ 88 (283)
T 2ioy_A 21 NGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANSK-------NIPVITI 88 (283)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHT-------TCCEEEE
T ss_pred HHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHHHC-------CCeEEEe
Confidence 456677778898887776643 222334556665678999999887643 23555555443 5776655
No 234
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=26.96 E-value=41 Score=26.64 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=22.3
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (489)
+.+.|...++++.+.|+++|+..+..
T Consensus 87 r~~~l~a~s~~e~~~Wi~al~~~i~~ 112 (117)
T 1v5u_A 87 RVYNFCAQDVPSAQQWVDRIQSCLSS 112 (117)
T ss_dssp CEEEEECSSHHHHHHHHHHHHTTCCC
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhcc
Confidence 56889899999999999999888753
No 235
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=26.92 E-value=1.5e+02 Score=25.77 Aligned_cols=45 Identities=7% Similarity=0.008 Sum_probs=34.5
Q ss_pred hHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcC
Q 011290 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGG 175 (489)
++.++......|++++.+.|.+++...+.+.++. .++|+||+--|
T Consensus 32 ~~~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~-~~~dgiIINpg 76 (154)
T 1uqr_A 32 EQHLQQSAQAQGYELDYFQANGEESLINRIHQAF-QNTDFIIINPG 76 (154)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSHHHHHHHHHHTT-TTCCEEEEECT
T ss_pred HHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhh-hcCcEEEECcc
Confidence 3456666677899999999999998888888774 46888876544
No 236
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=26.57 E-value=1.1e+02 Score=28.05 Aligned_cols=48 Identities=6% Similarity=0.186 Sum_probs=33.9
Q ss_pred HhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011290 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt 178 (489)
+-++..+++.|+++.+..+.. .....++++.+...++|+||+.+.+..
T Consensus 27 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 27 TEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp HHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 456777788898887776643 233345667766678999999988764
No 237
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=26.56 E-value=50 Score=25.55 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=23.1
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhhc
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (489)
+.+.|...++++.+.|+++|+..+...
T Consensus 69 r~~~l~a~s~~e~~~Wi~al~~a~~~~ 95 (103)
T 3rcp_A 69 QHFYMKAVNAAERQRWLVALGSSKASL 95 (103)
T ss_dssp EEEEEECSSHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 578899999999999999999886543
No 238
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=26.50 E-value=1.3e+02 Score=28.65 Aligned_cols=78 Identities=13% Similarity=0.006 Sum_probs=46.5
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEE--EEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT--VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~--v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
..+|+.+|.. ... .+... .+.++..|+++|+++. ........+....++++...+.|.|++++-+.....+++.
T Consensus 158 g~~~ia~i~~-~~~--~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~ 233 (386)
T 3sg0_A 158 GAKKVGYIGF-SDA--YGEGY-YKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKA 233 (386)
T ss_dssp TCCEEEEEEE-SSH--HHHHH-HHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHH
T ss_pred CCCEEEEEec-Cch--HHHHH-HHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 3578887753 221 22222 2567788888898763 2222222234445556655688998887765666778887
Q ss_pred hhcC
Q 011290 186 LLER 189 (489)
Q Consensus 186 L~~~ 189 (489)
+.+.
T Consensus 234 ~~~~ 237 (386)
T 3sg0_A 234 LRER 237 (386)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7665
No 239
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.43 E-value=61 Score=25.53 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=22.8
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (489)
+.+.|...++++...|.++|+..+..
T Consensus 77 r~~~l~a~s~~e~~~Wi~ai~~~~~~ 102 (113)
T 1pls_A 77 QDHFFQAAFLEERDAWVRDINKAIKC 102 (113)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 57889999999999999999998764
No 240
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=26.12 E-value=58 Score=26.23 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=23.5
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhhc
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (489)
+.+.|...++++...|.++|+..+...
T Consensus 88 r~~~l~a~s~~e~~~Wi~al~~~i~~~ 114 (126)
T 1fao_A 88 RTFYLCAKTGVEADEWIKILRWKLSQI 114 (126)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999988653
No 241
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=26.05 E-value=1.6e+02 Score=21.76 Aligned_cols=55 Identities=15% Similarity=0.278 Sum_probs=35.1
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHh-hcCCCceEE
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL-DLSKYDGIV 171 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~-~~~~~d~IV 171 (489)
++++.++..|..+. -++++++|+..+++++.+..+ .....++.+.. .....-.|+
T Consensus 5 m~~v~~y~~~~C~~-------C~~~~~~L~~~~i~~~~vdv~-~~~~~~l~~~~~~~~~vP~l~ 60 (89)
T 2klx_A 5 MKEIILYTRPNCPY-------CKRARDLLDKKGVKYTDIDAS-TSLRQEMVQRANGRNTFPQIF 60 (89)
T ss_dssp CCCEEEESCSCCTT-------THHHHHHHHHHTCCEEEECSC-HHHHHHHHHHHHSSCCSCEEE
T ss_pred cceEEEEECCCChh-------HHHHHHHHHHcCCCcEEEECC-HHHHHHHHHHhCCCCCcCEEE
Confidence 44677777776653 257888999999998887766 44445565554 333444443
No 242
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=25.96 E-value=1e+02 Score=27.58 Aligned_cols=65 Identities=5% Similarity=0.056 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
+++.++-.+.--.+ . +.+..+| +++++.+.-....++.+.++++...+++.|| ||++..+.+..+
T Consensus 95 ~kIavvg~~~~~~~-----~-~~~~~ll---~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvV---G~~~~~~~A~~~ 159 (196)
T 2q5c_A 95 NELALIAYKHSIVD-----K-HEIEAML---GVKIKEFLFSSEDEITTLISKVKTENIKIVV---SGKTVTDEAIKQ 159 (196)
T ss_dssp SEEEEEEESSCSSC-----H-HHHHHHH---TCEEEEEEECSGGGHHHHHHHHHHTTCCEEE---ECHHHHHHHHHT
T ss_pred CcEEEEeCcchhhH-----H-HHHHHHh---CCceEEEEeCCHHHHHHHHHHHHHCCCeEEE---CCHHHHHHHHHc
Confidence 47777755543221 1 3566666 4678888888899999999999888999866 588887777533
No 243
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=25.93 E-value=1.5e+02 Score=25.75 Aligned_cols=58 Identities=22% Similarity=0.355 Sum_probs=36.8
Q ss_pred HhHHHHHHhCCCcEEEEE--eCChhHHHHHHHH-hhcCCCceEEEEcCCC-----hHHHHHHHhhc
Q 011290 131 DDVKPLLEDANIQFTVQE--TTQQLHAKEIVKV-LDLSKYDGIVCVSGDG-----ILVEVVNGLLE 188 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~--T~~~~ha~el~~~-~~~~~~d~IV~vGGDG-----tl~EVvnGL~~ 188 (489)
..+..+|.+.|+++..+. -.......+.+++ .+..++|.|++.||=| ...|++..+..
T Consensus 43 ~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~~~~D~t~ea~~~~~~ 108 (178)
T 3iwt_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRKLFD 108 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHHHGGGCS
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcccCCCCchHHHHHHhhh
Confidence 458889999999865433 3444444443333 3456799999999977 34455554433
No 244
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=25.86 E-value=1.3e+02 Score=28.61 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=13.5
Q ss_pred cCCCceEEEEcCCChH
Q 011290 164 LSKYDGIVCVSGDGIL 179 (489)
Q Consensus 164 ~~~~d~IV~vGGDGtl 179 (489)
...||.|++.||-|..
T Consensus 143 ~~~yD~livPGG~g~~ 158 (291)
T 1n57_A 143 DSEYAAIFVPGGHGAL 158 (291)
T ss_dssp TCSEEEEEECCSGGGG
T ss_pred cccCCEEEecCCcchh
Confidence 4679999999998765
No 245
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=25.85 E-value=55 Score=25.75 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.4
Q ss_pred EeeEEecCCCHHHHHHHHHHHHHhhhh
Q 011290 79 RKDFVFEPLSEDSKRLWCEKLRDFIDS 105 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (489)
.+.+.|...++++...|+++|+..+..
T Consensus 87 ~~~~~l~a~s~~e~~~Wi~al~~~~~~ 113 (118)
T 1v89_A 87 QDSYVLMASSQAEMEEWVKFLRRVAGS 113 (118)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEECCCHHHHHHHHHHHHHHHcc
Confidence 467889999999999999999998763
No 246
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.77 E-value=58 Score=25.94 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=22.6
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (489)
+.+.|...++++...|+++|+..+..
T Consensus 77 r~~~l~a~s~~e~~~Wi~al~~~~~~ 102 (114)
T 2da0_A 77 RTYHFQAEDEQDYVAWISVLTNSKEE 102 (114)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999887653
No 247
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=25.54 E-value=1.4e+02 Score=25.96 Aligned_cols=78 Identities=22% Similarity=0.334 Sum_probs=45.1
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhh-c-----CCCceEEEEc----CCCh-
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD-L-----SKYDGIVCVS----GDGI- 178 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~-~-----~~~d~IV~vG----GDGt- 178 (489)
.|+.|+.-.+--. -..+.. +-....|..+|.+++++..-..-+.--.++.+. . .+||+|||.| |+=.
T Consensus 13 ~ri~IV~arfn~~-I~~~Ll-~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~H 90 (157)
T 2i0f_A 13 PHLLIVEARFYDD-LADALL-DGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYH 90 (157)
T ss_dssp CEEEEEEECSSHH-HHHHHH-HHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSST
T ss_pred cEEEEEEEeCcHH-HHHHHH-HHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchH
Confidence 4677766544321 111222 345566777787777777665555444444443 2 5799999988 4332
Q ss_pred ----HHHHHHHhhcC
Q 011290 179 ----LVEVVNGLLER 189 (489)
Q Consensus 179 ----l~EVvnGL~~~ 189 (489)
-+++..||++-
T Consensus 91 fd~Va~~v~~gl~~v 105 (157)
T 2i0f_A 91 FDIVSNESCRALTDL 105 (157)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 34677777664
No 248
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=25.27 E-value=2.1e+02 Score=27.88 Aligned_cols=75 Identities=9% Similarity=0.087 Sum_probs=48.9
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC---hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~---~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
-+++.+|++-.-|.+ . .+.+...++..|+.+...+... ..+...++.++...+.|+|++.+-......++..
T Consensus 130 w~~vaii~d~~~g~~----~-~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~q 204 (389)
T 3o21_A 130 WEKFVYLYDTERGFS----V-LQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQ 204 (389)
T ss_dssp CCEEEEEECSTTCSH----H-HHHHHHHHHHTTCEEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHH
T ss_pred CCEEEEEEcCcHHHH----H-HHHHHHHhhcCCCeEEEEEecCCCCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 478999886433332 2 2456677888998876655432 2256677778777788988887665566666665
Q ss_pred hhc
Q 011290 186 LLE 188 (489)
Q Consensus 186 L~~ 188 (489)
+.+
T Consensus 205 a~~ 207 (389)
T 3o21_A 205 VVI 207 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 249
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=25.22 E-value=46 Score=27.23 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=22.0
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (489)
+.+.|...++++.+.|+++|+..+.
T Consensus 100 r~~~l~A~s~~e~~~Wi~ai~~~i~ 124 (128)
T 2rlo_A 100 QTWHFEAASFEERDAWVQAIESQIL 124 (128)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999988764
No 250
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=25.18 E-value=74 Score=29.12 Aligned_cols=85 Identities=11% Similarity=0.164 Sum_probs=49.3
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
++.+.+.|++.-.+.. --..+ .+-++..+++.|+++.+..+.......++++.+...++|+|| ++.+.. .+.+..
T Consensus 3 ~~~~~Igvi~~~~~~~-~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~-~~~~~~- 77 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNP-WFIDL-IQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGII-IAQDIP-DFTVPD- 77 (280)
T ss_dssp -CCCEEEEEESCTTSG-GGHHH-HHHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEE-EESCC---------
T ss_pred CccCEEEEEeCCCCCh-HHHHH-HHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHhCCCCEEE-ecCCCC-hhhHhh-
Confidence 3456677766433221 11222 356778888899988888776333344566777667899999 887765 232221
Q ss_pred hcCcCccccCCCcEEEecC
Q 011290 187 LEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP~ 205 (489)
..+|+-.+=.
T Consensus 78 ---------~~iPvV~~~~ 87 (280)
T 3gyb_A 78 ---------SLPPFVIAGT 87 (280)
T ss_dssp ----------CCCEEEESC
T ss_pred ---------cCCCEEEECC
Confidence 2677766654
No 251
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=24.98 E-value=48 Score=25.82 Aligned_cols=24 Identities=4% Similarity=0.268 Sum_probs=21.0
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~ 103 (489)
+.+.|...++++.+.|.++|+..+
T Consensus 85 ~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 85 VHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHh
Confidence 468899999999999999998765
No 252
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=24.87 E-value=76 Score=30.99 Aligned_cols=78 Identities=18% Similarity=0.160 Sum_probs=43.0
Q ss_pred HHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011290 98 KLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 98 ~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDG 177 (489)
.|+.++.. .-.-+.|+-||-.-.|++.+....-|+..-++.|+.+. ..+...+ .++.+.+..-++|.||++|=--
T Consensus 22 ~L~~L~~~--~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~--~~~~~~~-~~~~~~l~~~~~Dliv~~~y~~ 96 (318)
T 3q0i_A 22 HLAALLSS--EHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVY--QPENFKS-DESKQQLAALNADLMVVVAYGL 96 (318)
T ss_dssp HHHHHHTS--SSEEEEEECCCC---------CCCHHHHHHHHTTCCEE--CCSCSCS-HHHHHHHHTTCCSEEEESSCCS
T ss_pred HHHHHHHC--CCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEE--ccCcCCC-HHHHHHHHhcCCCEEEEeCccc
Confidence 34444432 23457788888665555555555678888889999863 2222221 2455666656799888887655
Q ss_pred hHH
Q 011290 178 ILV 180 (489)
Q Consensus 178 tl~ 180 (489)
.|.
T Consensus 97 ilp 99 (318)
T 3q0i_A 97 LLP 99 (318)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 253
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=24.77 E-value=1.2e+02 Score=28.75 Aligned_cols=77 Identities=8% Similarity=0.015 Sum_probs=48.7
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T--~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.+++.+|.... ..+... .+.++..|+++|+++..... ....+....++++...+.|.|++++.|.....++..+
T Consensus 138 ~~~iaii~~~~---~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~ 213 (356)
T 3ipc_A 138 DAKVAIIHDKT---PYGQGL-ADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQA 213 (356)
T ss_dssp TCCEEEEECSS---HHHHHH-HHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEEeCCC---hHHHHH-HHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHH
Confidence 46788887532 122222 35678888999987532222 2223344556666557899999888888777888877
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
.+.
T Consensus 214 ~~~ 216 (356)
T 3ipc_A 214 ADQ 216 (356)
T ss_dssp HHH
T ss_pred HHC
Confidence 654
No 254
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=24.66 E-value=1.5e+02 Score=26.39 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=38.6
Q ss_pred hHhHHHHHHhCCCcEEE--EEeCChhHHHHHHHHhhcCCCceEEEEcCCC-----hHHHHHHHhhc
Q 011290 130 LDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-----ILVEVVNGLLE 188 (489)
Q Consensus 130 ~~~v~p~l~~a~i~~~v--~~T~~~~ha~el~~~~~~~~~d~IV~vGGDG-----tl~EVvnGL~~ 188 (489)
...+..+|+++|+++.. +.-+......+.++++...++|.||+.||=| ...|++..+.+
T Consensus 51 ~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~~D~t~eal~~l~~ 116 (185)
T 3rfq_A 51 GPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDVTPESTREILD 116 (185)
T ss_dssp HHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTTCS
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCcccHHHHHHHHhc
Confidence 35688999999987643 3344555555555554335799999999966 34566665543
No 255
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=24.65 E-value=77 Score=29.19 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=51.7
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnG 185 (489)
++.+.+.|++.......--.+ +.+-++..+++.|..+.+..+.. .....++.+.+...++|+||+++-+..-.++..
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~- 86 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISR-FLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISNYDLEYLN- 86 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHH-HHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCHHHHHHHH-
T ss_pred CCCceEEEEeccccchHHHHH-HHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCCcccHHHHH-
Confidence 456678888862222211122 23567778888899877765532 222334555565678999999988765433332
Q ss_pred hhcCcCccccCCCcEEEecC
Q 011290 186 LLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 186 L~~~~~~~~~~~~plgiIP~ 205 (489)
+.. ..+|+-.+-.
T Consensus 87 ~~~-------~~iPvV~~~~ 99 (289)
T 3g85_A 87 KAS-------LTLPIILFNR 99 (289)
T ss_dssp HCC-------CSSCEEEESC
T ss_pred hcc-------CCCCEEEECC
Confidence 222 2678766654
No 256
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=24.64 E-value=86 Score=30.57 Aligned_cols=69 Identities=13% Similarity=-0.039 Sum_probs=43.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~ 180 (489)
-.-+.|+-+|-.-.|++.++...-|+..-.+.|+.+. ..+..... +..+.+..-++|.||++|=--.|.
T Consensus 28 ~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIpv~--~~~~~~~~-~~~~~l~~~~~Dliv~~~y~~ilp 96 (317)
T 3rfo_A 28 YDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVL--QPLRIREK-DEYEKVLALEPDLIVTAAFGQIVP 96 (317)
T ss_dssp CEEEEEECCCCCEETTTTEECCCHHHHHHHHTTCCEE--CCSCTTSH-HHHHHHHHHCCSEEEESSCCSCCC
T ss_pred CcEEEEEeCCCcccCCCcccCCCHHHHHHHHcCCCEE--ccccCCCH-HHHHHHHhcCCCEEEEcCchhhCC
Confidence 4567889999876666666655678888889999853 22222211 223444434789888887444443
No 257
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=24.58 E-value=2.3e+02 Score=26.05 Aligned_cols=78 Identities=10% Similarity=0.131 Sum_probs=49.1
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhhc-----CCCceEEEEcCCChHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDL-----SKYDGIVCVSGDGILVEV 182 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~~-----~~~d~IV~vGGDGtl~EV 182 (489)
.+++.+|..|..- ......+ +-.+..++++|+++.++.+.. ...+.+.++++-. .++|+|+ +..|.+-.-+
T Consensus 131 ~~~I~~i~~~~~~-~~~~~R~-~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~ 207 (295)
T 3hcw_A 131 VDELIFITEKGNF-EVSKDRI-QGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAI 207 (295)
T ss_dssp CSEEEEEEESSCC-HHHHHHH-HHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHH
T ss_pred CccEEEEcCCccc-hhHHHHH-HHHHHHHHHcCCCeeEEeccCCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHH
Confidence 4678888766432 2223333 456778888999887666543 3445555555421 2577765 5788887888
Q ss_pred HHHhhcC
Q 011290 183 VNGLLER 189 (489)
Q Consensus 183 vnGL~~~ 189 (489)
++.|.+.
T Consensus 208 ~~al~~~ 214 (295)
T 3hcw_A 208 LSVLYEL 214 (295)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 8888765
No 258
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.33 E-value=56 Score=26.24 Aligned_cols=25 Identities=8% Similarity=0.384 Sum_probs=22.3
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (489)
+.+.|...++++.+.|+++|+..+.
T Consensus 80 r~~~l~a~s~~e~~~Wi~al~~~~~ 104 (120)
T 2d9x_A 80 EQYKLRATDAKERQHWVSRLQICTQ 104 (120)
T ss_dssp CCEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998765
No 259
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=24.09 E-value=4.3e+02 Score=25.27 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhhhc----CC-CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE---eCChhHHHHHHHH
Q 011290 90 DSKRLWCEKLRDFIDSF----GR-PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKV 161 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~r-pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~---T~~~~ha~el~~~ 161 (489)
+.++...+.+++.+... .+ |+=..|++ |...|.+.|.+.-+...++.|+.+..+. +..+.+..+.+++
T Consensus 12 ~ia~~i~~~~~~~v~~l~~~~~~~P~Lavilv----g~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~ 87 (286)
T 4a5o_A 12 AIAANLRQQIAQRVTERRQQGLRVPGLAVILV----GTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDR 87 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEE----SCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEEEEe----CCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555666665554322 34 43334444 4455677888888899999999887765 3345566666777
Q ss_pred hhcC-CCceEEE
Q 011290 162 LDLS-KYDGIVC 172 (489)
Q Consensus 162 ~~~~-~~d~IV~ 172 (489)
+..+ ..|+|++
T Consensus 88 lN~d~~v~GIlV 99 (286)
T 4a5o_A 88 LNDDPAIDGILV 99 (286)
T ss_dssp HHTCTTCCEEEE
T ss_pred HhCCCCCCEEEE
Confidence 7643 5677765
No 260
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=23.98 E-value=72 Score=24.91 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=22.4
Q ss_pred EeeEEecCCCHHHHHHHHHHHHHhhh
Q 011290 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (489)
.+.+.|...++++...|.++|+....
T Consensus 78 ~~~~~~~a~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 78 MVFYVFKADDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 46788999999999999999988753
No 261
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=23.94 E-value=61 Score=28.06 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=27.9
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCC
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFG 120 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~~rpkr~lviiNP~s 120 (489)
+.+.|...++++.+.|+++|++.+...+ .++--++|..
T Consensus 97 rt~~l~A~s~~e~~~Wi~aL~~~i~~n~---~~~~~yHpg~ 134 (164)
T 2lul_A 97 NTLYIFAPSPQSRDLWVKKLKEEIKNNN---NIMIKYHPKF 134 (164)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTTCS---CCCSEECCSC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHHCh---hhhhhcCCCc
Confidence 4688888999999999999999986432 2233456644
No 262
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=23.93 E-value=2.5e+02 Score=25.14 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=36.1
Q ss_pred HhHHHHHHhCCCc--E--EEEEeCChhHHHHHHHHhhc-CCCceEEEEcCCCh-----HHHHHHHhhc
Q 011290 131 DDVKPLLEDANIQ--F--TVQETTQQLHAKEIVKVLDL-SKYDGIVCVSGDGI-----LVEVVNGLLE 188 (489)
Q Consensus 131 ~~v~p~l~~a~i~--~--~v~~T~~~~ha~el~~~~~~-~~~d~IV~vGGDGt-----l~EVvnGL~~ 188 (489)
..+..+|+++|++ + ..+.-+......+.++++.. .++|.||+.||=|. ..|++..++.
T Consensus 26 ~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g~~D~T~ea~~~~~~ 93 (195)
T 1di6_A 26 PALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVAD 93 (195)
T ss_dssp HHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCccHHHHHHHHhc
Confidence 4678889998876 2 22344555555555555433 36999999999762 3556655543
No 263
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=23.88 E-value=1.3e+02 Score=26.44 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=48.4
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHH-HHhCCCcEEEEEeCCh------------hHHHHHHHHhhcCCCceEEEEcC-
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPL-LEDANIQFTVQETTQQ------------LHAKEIVKVLDLSKYDGIVCVSG- 175 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~-l~~a~i~~~v~~T~~~------------~ha~el~~~~~~~~~d~IV~vGG- 175 (489)
+++++|+=--...+...++- +.+... +..+|.+++++..... .+..++.+++. .+|+||++.-
T Consensus 3 mkilii~gS~r~~g~t~~la-~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~--~aD~ii~~sP~ 79 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLA-EYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATC--NADGLIVATPI 79 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHH-HHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHH--HCSEEEEEEEC
T ss_pred ceEEEEECCCCCCChHHHHH-HHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHH--HCCEEEEEeCc
Confidence 46665553221123344433 567777 8878888887764321 24455555553 5888887652
Q ss_pred -CChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 176 -DGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 176 -DGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
-|.+.-.+..++++-........|++++-.
T Consensus 80 y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 80 YKASYTGLLKAFLDILPQFALAGKAALPLAT 110 (197)
T ss_dssp BTTBCCHHHHHHHTTSCTTTTTTCEEEEEEE
T ss_pred cCCCCCHHHHHHHHhccccccCCCEEEEEEE
Confidence 234445555555542211122445555544
No 264
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=23.77 E-value=1.9e+02 Score=20.19 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=24.3
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ 152 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~ 152 (489)
++.++..|..+. -+++++.|++.+++++.+.....
T Consensus 2 ~i~~y~~~~C~~-------C~~~~~~l~~~~i~~~~~di~~~ 36 (75)
T 1r7h_A 2 SITLYTKPACVQ-------CTATKKALDRAGLAYNTVDISLD 36 (75)
T ss_dssp CEEEEECTTCHH-------HHHHHHHHHHTTCCCEEEETTTC
T ss_pred eEEEEeCCCChH-------HHHHHHHHHHcCCCcEEEECCCC
Confidence 356666665542 35788899999999887766543
No 265
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=23.67 E-value=2.7e+02 Score=27.08 Aligned_cols=104 Identities=12% Similarity=-0.018 Sum_probs=59.6
Q ss_pred EEecC--CCHHHHHHHHHHHHHhhhhc---CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC--hhH
Q 011290 82 FVFEP--LSEDSKRLWCEKLRDFIDSF---GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ--QLH 154 (489)
Q Consensus 82 ~~~~~--~~~~~~~~w~~~l~~~~~~~---~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~--~~h 154 (489)
+.|+. .+........+.+....... ...+++.+|+.... -+.. +.+.++..+++.|+++...++-. ..+
T Consensus 132 ~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~~~~---~g~~-~~~~~~~~~~~~g~~vv~~~~~~~~~~d 207 (419)
T 3h5l_A 132 GTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITGPGI---YSVN-IANAIRDGAGEYGYDVSLFETVAIPVSD 207 (419)
T ss_dssp TEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEECSSH---HHHH-HHHHHHHHGGGGTCEEEEEEECCSSCSC
T ss_pred eEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEEEEEcCcc---hhHH-HHHHHHHHHHHcCCeEEEEecCCCCCcc
Confidence 34443 33444444445444433221 24578888875321 1222 33678888999998876544322 234
Q ss_pred HHHHHHHhhcCCCceEEEEcCCC-hHHHHHHHhhcC
Q 011290 155 AKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNGLLER 189 (489)
Q Consensus 155 a~el~~~~~~~~~d~IV~vGGDG-tl~EVvnGL~~~ 189 (489)
...++.++...+.|.|++++-.+ ....++..+.+.
T Consensus 208 ~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~ 243 (419)
T 3h5l_A 208 WGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTD 243 (419)
T ss_dssp CHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHc
Confidence 45667777667899888876544 466677776554
No 266
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.64 E-value=61 Score=25.47 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.3
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (489)
+.+.|...++++.+.|.++|+..+..
T Consensus 79 r~~~l~a~s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 79 KTFEISASDKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999988753
No 267
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=23.54 E-value=2e+02 Score=26.32 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=42.4
Q ss_pred HhHHHHHHhCCCcEEEEE--eCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHhhcCcCccccCCCcEEEec
Q 011290 131 DDVKPLLEDANIQFTVQE--TTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~--T~~-~~ha~el~~~~~~~~~d~IV~vGGDGt-l~EVvnGL~~~~~~~~~~~~plgiIP 204 (489)
+-++..+++.|+.+.+.. ++. ...-.++++.+...+.|+||+++.|.. +.+.+..+... .+|+-.+=
T Consensus 21 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~~~ 91 (288)
T 1gud_A 21 KGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKK-------GIYLVNLD 91 (288)
T ss_dssp HHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHT-------TCEEEEES
T ss_pred HHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC-------CCeEEEEC
Confidence 356677778898887766 433 222334556665578999999887754 23556655443 57776663
No 268
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=23.20 E-value=94 Score=26.27 Aligned_cols=56 Identities=5% Similarity=0.047 Sum_probs=37.5
Q ss_pred ccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 127 KIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 127 ~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.-|.+.|...|..+|+.+++.........-.-++++...++-.++++|- .|+-++-
T Consensus 21 ~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~----kE~e~~s 76 (130)
T 1v95_A 21 KDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQ----QHQIHRS 76 (130)
T ss_dssp GHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECH----HHHHHTE
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEec----hHHhcCe
Confidence 3588899999999999999876421122333455666667777888763 3665553
No 269
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=23.14 E-value=2e+02 Score=21.73 Aligned_cols=50 Identities=14% Similarity=0.312 Sum_probs=29.6
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK 160 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~ 160 (489)
+++.|+.-|..+.-+-.+.- ++++.+|+..+++++.+.-.....+++-++
T Consensus 2 ~~v~ly~~~~C~~c~~~~~~-~~ak~~L~~~~i~~~~~di~~~~~~~~~l~ 51 (93)
T 1t1v_A 2 SGLRVYSTSVTGSREIKSQQ-SEVTRILDGKRIQYQLVDISQDNALRDEMR 51 (93)
T ss_dssp CCEEEEECSSCSCHHHHHHH-HHHHHHHHHTTCCCEEEETTSCHHHHHHHH
T ss_pred CCEEEEEcCCCCCchhhHHH-HHHHHHHHHCCCceEEEECCCCHHHHHHHH
Confidence 35667766655432111111 578889999999998876654434444333
No 270
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=23.14 E-value=1.4e+02 Score=30.32 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEE
Q 011290 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV 146 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v 146 (489)
....|.+.+.+.++..-+.++ .|+++|..|.+. ..+..+|++.|+++..
T Consensus 153 ~~~~Y~~~l~~~~~~~i~~~~-kivvD~~nG~~~------~~~~~ll~~lG~~v~~ 201 (443)
T 3i3w_A 153 AIDEYIESIYSRFAKFVNYKG-KVVVDCAHGAAS------HNFEALLDKFGINYVS 201 (443)
T ss_dssp TTHHHHHHHHHHHTTTCCCCS-EEEEECTTSTTT------THHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCchhhccCC-eEEEECCCChHH------HHHHHHHHHcCCEEEE
Confidence 345677777777753213345 899999888653 2466788888987654
No 271
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=22.94 E-value=2.6e+02 Score=27.92 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=47.9
Q ss_pred HhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcC
Q 011290 101 DFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (489)
Q Consensus 101 ~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGG 175 (489)
..+......+.+-||+|-.+|++.-. +. ++++.+++++|.++-++.....+-++ -+.. +.|+.|.++=
T Consensus 256 ~~I~kA~dA~~~GIIvgTLg~Q~~~~-~~-~~L~~ll~~~Gkk~y~i~vg~inp~K----LanF-~iD~fV~vaC 323 (378)
T 3lzd_A 256 AQIAKAMDAKKFGVIVSIKKGQLRLA-EA-KRIVKLLKKHGREARLIVMNDVNYHK----LEGF-PFEAYVVVAC 323 (378)
T ss_dssp HHHHHHTTCCEEEEEEECSTTTCCHH-HH-HHHHHHHHHTTCEEEEEEESSCCHHH----HTTS-CCSEEEECSC
T ss_pred HHHHHHhcCCEEEEEEeCCccCCCHH-HH-HHHHHHHHHcCCcEEEEEeCCCCHHH----HhCC-CCCEEEEecC
Confidence 33445566789999999999988754 44 68999999999988777766665442 1122 3777776653
No 272
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=22.80 E-value=3.4e+02 Score=24.90 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceE
Q 011290 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGI 170 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~I 170 (489)
.+-.|.-.|-...+ .++.++.--.+ ..+.+ +.+++...+...+++++........-+..+++.+...++|.|
T Consensus 22 ~al~~A~~la~~~~-----a~l~ll~v~~~--~~~~~-~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dli 93 (290)
T 3mt0_A 22 LALKRAQLIAGVTQ-----SHLHLLVCEKR--RDHSA-ALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLI 93 (290)
T ss_dssp HHHHHHHHHHHHHC-----CEEEEEEECSS--SCCHH-HHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHhcC-----CeEEEEEeeCc--HHHHH-HHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEE
Confidence 45566665544432 23333322111 33443 335677777888998887765333345667777665678866
Q ss_pred EEEc-CCC-----hHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 171 VCVS-GDG-----ILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 171 V~vG-GDG-----tl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
|+-. |.+ .+..+...++.+ ...|+-++|.
T Consensus 94 V~G~~~~~~~~~~~~gs~~~~vl~~------~~~PVlvv~~ 128 (290)
T 3mt0_A 94 IKQHFPDNPLKKAILTPDDWKLLRF------APCPVLMTKT 128 (290)
T ss_dssp EEECCCSCTTSTTSCCHHHHHHHHH------CSSCEEEECC
T ss_pred EEecccCCchhhcccCHHHHHHHhc------CCCCEEEecC
Confidence 6542 222 233455566654 3799999995
No 273
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=22.77 E-value=2.2e+02 Score=21.99 Aligned_cols=35 Identities=11% Similarity=0.387 Sum_probs=24.4
Q ss_pred cEEEEEEc-----CCCCCccccccchHhHHHHHHhCCCcEEEEEeCC
Q 011290 110 KRLYIFVN-----PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ 151 (489)
Q Consensus 110 kr~lviiN-----P~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~ 151 (489)
.++.|+.. |..+ +-++++++|...++++..+....
T Consensus 17 ~~vvvf~~g~~~~~~C~-------~C~~~~~~L~~~~i~~~~vdi~~ 56 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCG-------FSKQILEILNSTGVEYETFDILE 56 (105)
T ss_dssp SSEEEEESBCSSSBCTT-------HHHHHHHHHHHHTCCCEEEEGGG
T ss_pred CCEEEEEecCCCCCCCc-------cHHHHHHHHHHCCCCeEEEECCC
Confidence 34777766 3332 34689999999999987776543
No 274
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=22.68 E-value=94 Score=24.98 Aligned_cols=39 Identities=10% Similarity=0.396 Sum_probs=28.9
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ 151 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~ 151 (489)
+++++++.. .|-+.+...++++..+++.|+++++..+..
T Consensus 3 mkkIll~Cg----~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~ 41 (106)
T 1e2b_A 3 KKHIYLFSS----AGMSTSLLVSKMRAQAEKYEVPVIIEAFPE 41 (106)
T ss_dssp CEEEEEECS----SSTTTHHHHHHHHHHHHHSCCSEEEEEECS
T ss_pred CcEEEEECC----CchhHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 457777764 344455677899999999999998876554
No 275
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=22.54 E-value=4.2e+02 Score=23.76 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=47.3
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC-ChhHHHHHHHHhhc---CCCceEEEEcCCChHHHHHH
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDL---SKYDGIVCVSGDGILVEVVN 184 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~-~~~ha~el~~~~~~---~~~d~IV~vGGDGtl~EVvn 184 (489)
.+++.+|..|..- ......+ +-.+..++++++++.++... ....+.+.++++-. .++|+|+ +..|.+...+++
T Consensus 118 ~~~i~~i~~~~~~-~~~~~R~-~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~ 194 (277)
T 3cs3_A 118 SKKVLLLSGPEKG-YDSQERL-AVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYK 194 (277)
T ss_dssp CSCEEEEECCTTS-HHHHHHH-HHHHHHHHHTTCCEEEEECCSSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHH
T ss_pred CceEEEEeCCccC-ccHHHHH-HHHHHHHHHcCCCeeEEeCCCChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHH
Confidence 4678777766432 1222223 34667788889887744433 34445666666532 2467666 467888888888
Q ss_pred HhhcC
Q 011290 185 GLLER 189 (489)
Q Consensus 185 GL~~~ 189 (489)
.|.+.
T Consensus 195 al~~~ 199 (277)
T 3cs3_A 195 YVAET 199 (277)
T ss_dssp HHTTS
T ss_pred HHHHc
Confidence 88665
No 276
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=22.43 E-value=1.3e+02 Score=25.94 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=36.6
Q ss_pred HhHHHHHHhCCCcEEE--EEeCChhHHHHHHHHhhcC-CCceEEEEcCCC-----hHHHHHHHhh
Q 011290 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLS-KYDGIVCVSGDG-----ILVEVVNGLL 187 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v--~~T~~~~ha~el~~~~~~~-~~d~IV~vGGDG-----tl~EVvnGL~ 187 (489)
..+..+|+++|+++.. +.-+......+.++++... ++|.||+.||=| ...|++..+.
T Consensus 24 ~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~~~~ 88 (164)
T 2is8_A 24 LAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRDRTPEATRELL 88 (164)
T ss_dssp HHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHTTC
T ss_pred HHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCChHHHHHHHh
Confidence 4688889999986543 3344555555555554333 799999999965 2456665553
No 277
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=22.36 E-value=2.6e+02 Score=25.27 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT 150 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~ 150 (489)
+++.|+|+++|-||..- .-.+...|...|.++-++...
T Consensus 3 ~~I~v~s~kgGvGKTt~--a~~LA~~la~~g~~VlliD~D 40 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTI--TANLGVALAQLGHDVTIVDAD 40 (263)
T ss_dssp EEEEEEESSSCSCHHHH--HHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEECCCCCCCHHHH--HHHHHHHHHhCCCcEEEEECC
Confidence 45666677776666532 224555566666666555544
No 278
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=22.34 E-value=1.6e+02 Score=25.90 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=30.9
Q ss_pred EEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEE------eCChhHHHHHHHHhhcCCCc
Q 011290 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE------TTQQLHAKEIVKVLDLSKYD 168 (489)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~------T~~~~ha~el~~~~~~~~~d 168 (489)
.+|=+-++|- -+.+.++..|+..|+++.-+= +.|+.-+..+++.+...++|
T Consensus 24 IaIgsDhaG~-----~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d 80 (166)
T 3s5p_A 24 VAFASDHGGR-----DLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRAD 80 (166)
T ss_dssp EEEEECGGGH-----HHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCS
T ss_pred EEEEECchHH-----HHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 5566776663 244678999999998875443 34555566666665544444
No 279
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=22.28 E-value=79 Score=26.36 Aligned_cols=53 Identities=13% Similarity=0.052 Sum_probs=32.4
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG 174 (489)
++++|++ .|..|.++++ .+.+...+...+++++++... ...++.++|.|+++.
T Consensus 2 ~ki~I~Y--~S~tGnT~~~-A~~ia~~l~~~g~~v~~~~~~---------~~~~l~~~d~vi~g~ 54 (147)
T 2hna_A 2 ADITLIS--GSTLGGAEYV-AEHLAEKLEEAGFTTETLHGP---------LLEDLPASGIWLVIS 54 (147)
T ss_dssp CSEEEEC--CTTSCCCHHH-HHHHHHHHHHTTCCEEEECCT---------TSCSSCSEEEEEEEC
T ss_pred CeEEEEE--ECCchHHHHH-HHHHHHHHHHCCCceEEecCC---------CHHHcccCCeEEEEE
Confidence 4677887 4555666654 468888888888887765311 111345677666653
No 280
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=22.26 E-value=76 Score=28.25 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=34.3
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGt 178 (489)
+++++|+.++.+- .. ..+...|+.+|.++.++... + ++.++|+||+.||-+.
T Consensus 2 ~~~i~il~~~~~~------~~-~~~~~~l~~~g~~~~~~~~~----------~-~~~~~d~lil~Gg~~~ 53 (213)
T 3d54_D 2 KPRACVVVYPGSN------CD-RDAYHALEINGFEPSYVGLD----------D-KLDDYELIILPGGFSY 53 (213)
T ss_dssp CCEEEEECCTTEE------EH-HHHHHHHHTTTCEEEEECTT----------C-CCSSCSEEEECEECGG
T ss_pred CcEEEEEEcCCCC------cc-HHHHHHHHHCCCEEEEEecC----------C-CcccCCEEEECCCCch
Confidence 4678888876431 10 14577888999877666321 1 3467999999998653
No 281
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=22.23 E-value=62 Score=25.40 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.0
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~ 103 (489)
+.+.|...++++.+.|.++|++..
T Consensus 87 r~~~l~a~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 87 KTISLCAESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHh
Confidence 568899999999999999998764
No 282
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=22.06 E-value=1.1e+02 Score=26.01 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=37.7
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHh
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG---GDGtl~EVvnGL 186 (489)
++++|++=-. +|..+++- +.+...+... .++++...... .-++.+||.||++. |+|.+...+..+
T Consensus 2 mkilIiY~S~--tGnT~~vA-~~ia~~l~~~--~v~~~~~~~~~-------~~~l~~~d~ii~g~p~y~~g~~p~~~~~f 69 (169)
T 1obo_A 2 KKIGLFYGTQ--TGKTESVA-EIIRDEFGND--VVTLHDVSQAE-------VTDLNDYQYLIIGCPTLNIGELQSDWEGL 69 (169)
T ss_dssp CSEEEEECCS--SSHHHHHH-HHHHHHHCTT--TEEEEETTTCC-------GGGGGGCSEEEEEEEEETTTEECHHHHHH
T ss_pred CeEEEEEECC--CchHHHHH-HHHHHHhCcC--CcEEEEcccCC-------HHHHhhCCEEEEEEeeCCCCcCCHHHHHH
Confidence 4677777444 45555433 5666666654 55655433211 11345789888765 677665555555
Q ss_pred hc
Q 011290 187 LE 188 (489)
Q Consensus 187 ~~ 188 (489)
+.
T Consensus 70 l~ 71 (169)
T 1obo_A 70 YS 71 (169)
T ss_dssp HT
T ss_pred HH
Confidence 44
No 283
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=21.99 E-value=60 Score=25.69 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=22.5
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (489)
+.+.|...+.++.+.|.++|+..+..
T Consensus 75 r~~~l~a~s~~e~~~Wi~~l~~~~~~ 100 (115)
T 2cod_A 75 RTFVFRVEKEEERNDWISILLNALKS 100 (115)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 56889999999999999999998743
No 284
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=21.81 E-value=1.2e+02 Score=31.05 Aligned_cols=81 Identities=15% Similarity=0.143 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhhhc-CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCC--cEEEEEeCC------------hhHH
Q 011290 91 SKRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI--QFTVQETTQ------------QLHA 155 (489)
Q Consensus 91 ~~~~w~~~l~~~~~~~-~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i--~~~v~~T~~------------~~ha 155 (489)
....|.+.+.+.++.. -+.+++.|+++|..|.+. ..+..+|+..|+ ++.....+. ..++
T Consensus 156 ~~~~Y~~~l~~~~~~~~i~~~~lkivvd~~nG~~~------~~~~~~l~~lG~~~~v~~~~~~pDg~Fp~~~p~p~~~~~ 229 (464)
T 1tuo_A 156 LREAYFEALKAHLDLKALSGFSGVLYHDSMGGAGA------GFLKGFLRHVGLEIPVRPIREEPHPLFHGVNPEPIPKNL 229 (464)
T ss_dssp CHHHHHHHHHTTSCHHHHTTCCSCEEEECTTSTTT------THHHHHHHHTTCCCCEEEESCSCCTTGGGSCSCCSGGGC
T ss_pred cHHHHHHHHhhhcChhhccccCCEEEEECCCCcHH------HHHHHHHHHCCCCceEEEEecccCCCCCCCCcCCCchhH
Confidence 3456777777765421 123468899999988763 246678888898 655443221 1345
Q ss_pred HHHHHHhh-cCCCceEEEEcCCC
Q 011290 156 KEIVKVLD-LSKYDGIVCVSGDG 177 (489)
Q Consensus 156 ~el~~~~~-~~~~d~IV~vGGDG 177 (489)
.++.+... ..+.|..++.=|||
T Consensus 230 ~~l~~~v~~~~~adlgia~DgDa 252 (464)
T 1tuo_A 230 GVTLAVLGPETPPSFAVATDGDA 252 (464)
T ss_dssp HHHHHHHTTCCTTCEEEEECTTS
T ss_pred HHHHHHHHhccCCCEEEEECCCC
Confidence 67766665 55667666666666
No 285
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=21.79 E-value=2.5e+02 Score=20.75 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=32.8
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCC-hhHHHHHHHHhh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLD 163 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~-~~ha~el~~~~~ 163 (489)
++++.++..|..+. -++++++|+..+++++.+.... +....++.+...
T Consensus 5 m~~v~ly~~~~C~~-------C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~ 53 (92)
T 2khp_A 5 MVDVIIYTRPGCPY-------CARAKALLARKGAEFNEIDASATPELRAEMQERSG 53 (92)
T ss_dssp CCCEEEEECTTCHH-------HHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHT
T ss_pred cccEEEEECCCChh-------HHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhC
Confidence 45688888887642 3578899999999988776653 344445555443
No 286
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold, catalytic triad, merops S66 unassigned peptidases family; HET: MSE; 1.89A {Novosphingobium aromaticivorans}
Probab=21.66 E-value=1.4e+02 Score=28.37 Aligned_cols=72 Identities=11% Similarity=0.159 Sum_probs=44.2
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhC--CCcEEEEEe----------CChhHHHHHHHHhhcCCCceEEE-EcCCC
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQET----------TQQLHAKEIVKVLDLSKYDGIVC-VSGDG 177 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a--~i~~~v~~T----------~~~~ha~el~~~~~~~~~d~IV~-vGGDG 177 (489)
+-.-||.|.|+-.. +.+ +.....++.. |.++.+-.+ ..+..|.++.+.+.....|+|+| -||+|
T Consensus 4 ~~I~ivaPSs~~~~--~~~-~~~~~~l~~~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyg 80 (274)
T 3g23_A 4 RRIAICAPSTPFTR--EDS-ARVIALAAAEFPDLSLSFHEQCFASEGHFAGSDALRLSAFLECANDDAFEAVWFVRGGYG 80 (274)
T ss_dssp EEEEEECSSSCCCH--HHH-HHHHHHHHHHCTTEEEEECGGGGCCSSSSSSCHHHHHHHHHHHHTCTTCSEEEESCCSSC
T ss_pred CEEEEEeCCCCCCH--HHH-HHHHHHHHhccCCeEEEECcchhhccCccCCCHHHHHHHHHHHhhCCCCCEEEEeecccc
Confidence 45668899987542 234 3566677763 665554322 12234666766666677888877 58888
Q ss_pred hHHHHHHHh
Q 011290 178 ILVEVVNGL 186 (489)
Q Consensus 178 tl~EVvnGL 186 (489)
+ ++++..|
T Consensus 81 a-~rlL~~l 88 (274)
T 3g23_A 81 A-NRIAEDA 88 (274)
T ss_dssp T-HHHHHHH
T ss_pred H-HHHHHhh
Confidence 7 4556555
No 287
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=21.62 E-value=1.9e+02 Score=25.34 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=37.0
Q ss_pred HhHHHHHHhCCCcEEEE--EeCChhHHHHHHHHhhcC-CCceEEEEcCCC-----hHHHHHHHhhc
Q 011290 131 DDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLS-KYDGIVCVSGDG-----ILVEVVNGLLE 188 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~--~T~~~~ha~el~~~~~~~-~~d~IV~vGGDG-----tl~EVvnGL~~ 188 (489)
..+..+|+++|+++..+ .-+......+.++++... ++|.||+.||=| ...|++..++.
T Consensus 43 ~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~g~~D~t~eal~~~~~ 108 (178)
T 2pjk_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRKLFD 108 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHHHGGGCS
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcchHHHHHHHhc
Confidence 46888999999976433 334555555555544322 499999999855 35566665544
No 288
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=21.59 E-value=65 Score=26.36 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=22.1
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (489)
++|.|...++++...|+++|++.|.
T Consensus 99 ~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 99 SEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHh
Confidence 5789999999999999999998763
No 289
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=21.37 E-value=1.6e+02 Score=25.61 Aligned_cols=65 Identities=11% Similarity=0.021 Sum_probs=43.9
Q ss_pred EEEEEEcCCCC---Ccccccc--------chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011290 111 RLYIFVNPFGG---KKIASKI--------FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (489)
Q Consensus 111 r~lviiNP~sG---~~~a~~~--------~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDG 177 (489)
+++||-=|.-+ ++. ..+ .++.++......|++++.+.|.+++...+.+.++.. ++|+||+--|==
T Consensus 8 ~IlvlNGPNLNlLG~RE-P~iYG~~Tl~di~~~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~-~~dgiIINpgA~ 83 (156)
T 1gtz_A 8 PIMILNGPNLNLLGQAQ-PEIYGSDTLADVEALCVKAAAAHGGTVDFRQSNHEGELVDWIHEARL-NHCGIVINPAAY 83 (156)
T ss_dssp CEEEEECTTGGGTTTSC-HHHHCSCCHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHH-HCSEEEEECTTH
T ss_pred eEEEEeCCCccccCCCC-CCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhh-cCcEEEECchhh
Confidence 47777767643 222 112 234556666678999999999999998888877743 588888655533
No 290
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=21.21 E-value=1.4e+02 Score=26.69 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=43.1
Q ss_pred HhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
+.++.++.+.+.+++++.. .-+.+.+.++++ ..++|.||+-||=+. ++++. .++|+--||.
T Consensus 18 ~~~~~i~~e~~~~i~i~~~-~l~~~v~~a~~~-~~~~dVIISRGgta~-------~lr~~-----~~iPVV~I~~ 78 (196)
T 2q5c_A 18 NLFPKLALEKNFIPITKTA-SLTRASKIAFGL-QDEVDAIISRGATSD-------YIKKS-----VSIPSISIKV 78 (196)
T ss_dssp HHHHHHHHHHTCEEEEEEC-CHHHHHHHHHHH-TTTCSEEEEEHHHHH-------HHHTT-----CSSCEEEECC
T ss_pred HHHHHHHhhhCCceEEEEC-CHHHHHHHHHHh-cCCCeEEEECChHHH-------HHHHh-----CCCCEEEEcC
Confidence 3555666665667777654 467788899998 788999999998553 22221 3689999988
No 291
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=21.14 E-value=1.7e+02 Score=27.87 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=50.0
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEE--EEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v--~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
.+++.+|..... .+... .+.++..|+++|+++.. .......+....++++...+.|.|++++.|.....++..+
T Consensus 141 ~~~iaii~~~~~---~g~~~-~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~ 216 (364)
T 3lop_A 141 VTRIGVLYQEDA---LGKEA-ITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQY 216 (364)
T ss_dssp CCCEEEEEETTH---HHHHH-HHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHH
T ss_pred CceEEEEEeCch---hhHHH-HHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHH
Confidence 467888876432 12222 35678889999987532 2222233445566666667899999988777788888887
Q ss_pred hcC
Q 011290 187 LER 189 (489)
Q Consensus 187 ~~~ 189 (489)
.+.
T Consensus 217 ~~~ 219 (364)
T 3lop_A 217 RAR 219 (364)
T ss_dssp HHT
T ss_pred HHc
Confidence 665
No 292
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=21.09 E-value=2.3e+02 Score=26.66 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=41.7
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCCh-hHHHHHHHHhhcCCCceEEEEcCCCh
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI 178 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~-~ha~el~~~~~~~~~d~IV~vGGDGt 178 (489)
++.+.+.|++. .....--..+ .+-++..+++.|..+.+..+... ....++++.+...++|+|| ++.+..
T Consensus 58 ~~~~~Igvi~~-~~~~~~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 127 (330)
T 3ctp_A 58 KNSKTIGLMVP-NISNPFFNQM-ASVIEEYAKNKGYTLFLCNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQC 127 (330)
T ss_dssp --CCEEEEEES-CTTSHHHHHH-HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEE-EETCCC
T ss_pred CCCCEEEEEeC-CCCCcHHHHH-HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEE-ECCCCC
Confidence 34556777764 3222111222 24567778888998887766532 2334566666667899999 887754
No 293
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=21.04 E-value=35 Score=26.08 Aligned_cols=23 Identities=9% Similarity=0.397 Sum_probs=19.7
Q ss_pred eeEEecCCCHHHHHHHHHHHHHh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDF 102 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~ 102 (489)
+.+.|...++++.+.|.++|+++
T Consensus 70 r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 70 SVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp EEEEEECCSSCCTHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHhh
Confidence 46889999999999999999764
No 294
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=20.96 E-value=4.6e+02 Score=24.99 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhhhc----CCCcEEE-EEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEe---CChhHHHHHHHH
Q 011290 90 DSKRLWCEKLRDFIDSF----GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKV 161 (489)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~rpkr~l-viiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T---~~~~ha~el~~~ 161 (489)
+.++...+.+++.+..+ ++...+. |++ |...|.+.|.+.-+..+++.|+.+..+.- ..+.+..+.+++
T Consensus 11 ~ia~~i~~~~~~~v~~l~~~~~~~P~Lavilv----g~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~ 86 (285)
T 3l07_A 11 SLSKDLKERLATQVQEYKHHTAITPKLVAIIV----GNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQ 86 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE----SCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEEEEE----CCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555666666554322 3333444 444 55557778888888999999998877653 345566666777
Q ss_pred hhcC-CCceEEEEc---CCChHHHHHHHhhcCcC
Q 011290 162 LDLS-KYDGIVCVS---GDGILVEVVNGLLERED 191 (489)
Q Consensus 162 ~~~~-~~d~IV~vG---GDGtl~EVvnGL~~~~~ 191 (489)
+..+ ..|+|++-- +-=--.++++.+--.+|
T Consensus 87 lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KD 120 (285)
T 3l07_A 87 LNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKD 120 (285)
T ss_dssp HHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGB
T ss_pred HhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcccc
Confidence 7543 566665432 11112566665544333
No 295
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.89 E-value=65 Score=25.90 Aligned_cols=26 Identities=8% Similarity=0.149 Sum_probs=22.2
Q ss_pred EeeEEecCCCHHHHHHHHHHHHHhhh
Q 011290 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (489)
.+.+.|...++++++.|+++|+..+.
T Consensus 79 ~r~~~l~a~s~~e~~~Wi~al~~~~~ 104 (119)
T 2dhk_A 79 SRVITLKAATKQAMLYWLQQLQMKRW 104 (119)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 36788999999999999999988754
No 296
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=20.85 E-value=1.1e+02 Score=27.40 Aligned_cols=79 Identities=9% Similarity=0.101 Sum_probs=46.4
Q ss_pred CcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeC-ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHhh
Q 011290 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (489)
Q Consensus 109 pkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~-~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL~ 187 (489)
.+++.++..+..+.......+ +-.+..++++|++.+++... ....+.+.++++-..++|+|+| ..|.+-..+++.|.
T Consensus 115 ~~~I~~i~~~~~~~~~~~~R~-~gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~A~g~~~al~ 192 (255)
T 1byk_A 115 HRNISYLGVPHSDVTTGKRRH-EAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLC-ATDTLALGASKYLQ 192 (255)
T ss_dssp CCCEEEECCCTTSTTTTHHHH-HHHHHHHHHTTCCCEEECCCSCHHHHHHHSGGGCCTTCCEEEE-SSHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCcccHHHHH-HHHHHHHHHcCCCcceeecCCccchHHHHHHHHhcCCCCEEEE-eChHHHHHHHHHHH
Confidence 357777765432222222223 34667788888876544333 3344555555553346777665 67888888888887
Q ss_pred cC
Q 011290 188 ER 189 (489)
Q Consensus 188 ~~ 189 (489)
++
T Consensus 193 ~~ 194 (255)
T 1byk_A 193 EQ 194 (255)
T ss_dssp HT
T ss_pred Hc
Confidence 65
No 297
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=20.82 E-value=88 Score=25.08 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=22.6
Q ss_pred EeeEEecCCCHHHHHHHHHHHHHhhh
Q 011290 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (489)
.+.+.|...+.++...|.++|+..+.
T Consensus 85 ~~~~~~~a~s~~e~~~Wi~al~~~~~ 110 (125)
T 1unq_A 85 VIERTFHVETPEEREEWTTAIQTVAD 110 (125)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEeCCHHHHHHHHHHHHHHHh
Confidence 46788999999999999999988865
No 298
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=20.81 E-value=87 Score=25.38 Aligned_cols=27 Identities=15% Similarity=0.339 Sum_probs=23.2
Q ss_pred EeeEEecCCCHHHHHHHHHHHHHhhhh
Q 011290 79 RKDFVFEPLSEDSKRLWCEKLRDFIDS 105 (489)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (489)
.+.+.|...++++...|.++|+..+..
T Consensus 103 ~r~~~l~A~s~~e~~~Wi~al~~~i~~ 129 (134)
T 2y7b_A 103 VTKNWLSADTKEERDLWMQKLNQVLVD 129 (134)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999988753
No 299
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=20.71 E-value=1.9e+02 Score=25.06 Aligned_cols=58 Identities=10% Similarity=0.043 Sum_probs=37.0
Q ss_pred HhHHHHHHhCCCcEEE--EEeCChhHHHHHHHHhhcCCCceEEEEcCCC-----hHHHHHHHhhcC
Q 011290 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-----ILVEVVNGLLER 189 (489)
Q Consensus 131 ~~v~p~l~~a~i~~~v--~~T~~~~ha~el~~~~~~~~~d~IV~vGGDG-----tl~EVvnGL~~~ 189 (489)
..+..+|+++|+++.. +.-+. ....+.++++...++|.||+.||=| ...|++..++++
T Consensus 30 ~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~~D~t~eal~~~~~~ 94 (164)
T 3pzy_A 30 PIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAPTDSTPDQTVAVVDY 94 (164)
T ss_dssp HHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTTCSE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCCCccHHHHHHHHhcc
Confidence 4688899999987542 23344 4444444444324799999999865 356777666443
No 300
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=20.64 E-value=97 Score=24.99 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=31.9
Q ss_pred CCC-cEEEEEeCChhHHHHHHHHhhcCCCceEEEEcC-CCh-----HHHHHHHhhcCcCccccCCCcEEEec
Q 011290 140 ANI-QFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG-DGI-----LVEVVNGLLEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 140 a~i-~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGG-DGt-----l~EVvnGL~~~~~~~~~~~~plgiIP 204 (489)
.|+ +++..... ..-+.+|++.+...++|.||+..- -+. +..+.+.++.+. ++|+-++|
T Consensus 73 ~g~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~------~~pVlvv~ 137 (137)
T 2z08_A 73 TGVPKEDALLLE-GVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEA------PCPVLLVR 137 (137)
T ss_dssp HCCCGGGEEEEE-SSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHC------SSCEEEEC
T ss_pred cCCCccEEEEEe-cCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcC------CCCEEEeC
Confidence 666 54443322 234566777776667887666432 122 334555555542 67777776
No 301
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=20.62 E-value=69 Score=26.34 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.7
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~ 103 (489)
+.+.|...+.++.+.|+++|+...
T Consensus 94 ~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 94 HNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHC
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 302
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=20.54 E-value=1.3e+02 Score=25.13 Aligned_cols=67 Identities=22% Similarity=0.156 Sum_probs=38.7
Q ss_pred hHHHHHHhCCCcEEE--EEeCChhHHHHHHHHhhcCCCceEEEEc-CCChHH-----HHHHHhhcCcCccccCCCcEEEe
Q 011290 132 DVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGILV-----EVVNGLLEREDWNDAIKVPLGVV 203 (489)
Q Consensus 132 ~v~p~l~~a~i~~~v--~~T~~~~ha~el~~~~~~~~~d~IV~vG-GDGtl~-----EVvnGL~~~~~~~~~~~~plgiI 203 (489)
++...+...|++++. .... ..-+.+|++.+...++|.||+-. |-+.+. .+.+.++.+ .++|+-++
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~-g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~------~~~PVlvv 154 (170)
T 2dum_A 82 EKAEEVKRAFRAKNVRTIIRF-GIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRK------TKKPVLII 154 (170)
T ss_dssp HHHHHHHHHTTCSEEEEEEEE-ECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHH------CSSCEEEE
T ss_pred HHHHHHHHcCCceeeeeEEec-CChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHh------CCCCEEEE
Confidence 344455556777654 3322 23455677776666788666543 233333 345555554 27999999
Q ss_pred cC
Q 011290 204 PA 205 (489)
Q Consensus 204 P~ 205 (489)
|.
T Consensus 155 ~~ 156 (170)
T 2dum_A 155 KE 156 (170)
T ss_dssp CC
T ss_pred cc
Confidence 98
No 303
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=20.41 E-value=1.2e+02 Score=26.67 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=33.5
Q ss_pred cEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011290 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (489)
Q Consensus 110 kr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~E 181 (489)
+++.|+-+ .| .|. .....|+.+|+++.++.. . . ++.++|+||+-||-++..+
T Consensus 2 m~I~il~~--~~------~~~-~~~~~l~~~g~~~~~~~~--~-------~--~l~~~d~iil~GG~~~~~~ 53 (196)
T 2nv0_A 2 LTIGVLGL--QG------AVR-EHIHAIEACGAAGLVVKR--P-------E--QLNEVDGLILPGGESTTMR 53 (196)
T ss_dssp CEEEEECS--SS------CCH-HHHHHHHHTTCEEEEECS--G-------G--GGGGCSEEEECCSCHHHHH
T ss_pred cEEEEEEc--cC------CcH-HHHHHHHHCCCEEEEeCC--h-------H--HHhhCCEEEECCCChhhHH
Confidence 57777765 22 243 334788889987665532 1 1 2347999999999877653
No 304
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=20.40 E-value=2.4e+02 Score=27.11 Aligned_cols=78 Identities=19% Similarity=0.123 Sum_probs=48.8
Q ss_pred CCcEEEEEEcCCCCCccccccchHhHHHHHHhC--CCcEEEEEeC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011290 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (489)
Q Consensus 108 rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a--~i~~~v~~T~--~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVv 183 (489)
..+++.+|+. ..-- +... .+.++..|++. |+++.....- ...+....++++...+.|.|++++-+.....++
T Consensus 141 g~~~vaii~~-~~~~--g~~~-~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~ 216 (387)
T 3i45_A 141 PITRWATIAP-NYEY--GQSA-VARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFV 216 (387)
T ss_dssp SCCEEEEECC-SSHH--HHHH-HHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHH
T ss_pred CCCeEEEEeC-CchH--hHHH-HHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHH
Confidence 3578888873 2221 2222 25677888888 7765433321 223455666777667899999888877777887
Q ss_pred HHhhcC
Q 011290 184 NGLLER 189 (489)
Q Consensus 184 nGL~~~ 189 (489)
..+.+.
T Consensus 217 ~~~~~~ 222 (387)
T 3i45_A 217 REGRVR 222 (387)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 776554
No 305
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=20.33 E-value=63 Score=26.11 Aligned_cols=27 Identities=4% Similarity=0.190 Sum_probs=23.0
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhhhc
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (489)
+.+.|...++++.+.|+++|+..+...
T Consensus 96 ~~~~l~a~s~~e~~~Wi~al~~~~~~~ 122 (129)
T 1x05_A 96 VHYFLQAATPKERTEWIKAIQMASRTG 122 (129)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHcc
Confidence 568888999999999999999987643
No 306
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=20.12 E-value=1.3e+02 Score=26.11 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=33.6
Q ss_pred EEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011290 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (489)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~ 180 (489)
+++|+-|+ | .|. .+...|+.+|.++.++. .. . ++.++|+||+-||-++..
T Consensus 2 ~i~vl~~~--g------~~~-~~~~~l~~~G~~~~~~~--~~-------~--~~~~~dglil~GG~~~~~ 51 (186)
T 2ywj_A 2 IIGVLAIQ--G------DVE-EHEEAIKKAGYEAKKVK--RV-------E--DLEGIDALIIPGGESTAI 51 (186)
T ss_dssp EEEEECSS--S------CCH-HHHHHHHHTTSEEEEEC--SG-------G--GGTTCSEEEECCSCHHHH
T ss_pred EEEEEecC--c------chH-HHHHHHHHCCCEEEEEC--Ch-------H--HhccCCEEEECCCCchhh
Confidence 57777664 2 132 45578888998776653 21 1 346799999999987765
No 307
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.10 E-value=2.1e+02 Score=22.71 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=45.4
Q ss_pred chHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEc--CCChHHHHHHHhhcCcCccccCCCcEEEecC
Q 011290 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS--GDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (489)
Q Consensus 129 ~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vG--GDGtl~EVvnGL~~~~~~~~~~~~plgiIP~ 205 (489)
..+.++.+|+..|..+.+.......+|.+.+++ ..+|.|++-- .|..-.+++..|-.... ...+|+-++-.
T Consensus 17 ~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~---~~~dlii~D~~l~~~~g~~~~~~lr~~~~---~~~~pii~~s~ 89 (144)
T 3kht_A 17 DIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ---AKYDLIILDIGLPIANGFEVMSAVRKPGA---NQHTPIVILTD 89 (144)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT---CCCSEEEECTTCGGGCHHHHHHHHHSSST---TTTCCEEEEET
T ss_pred HHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc---CCCCEEEEeCCCCCCCHHHHHHHHHhccc---ccCCCEEEEeC
Confidence 446788999999988778877777777665543 5688777631 22233477777765321 12566666655
No 308
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=20.05 E-value=1.7e+02 Score=26.56 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=46.6
Q ss_pred CCCcEEEEEEcCCCCCccccccchHhHHHHHHhCCCcEEEEEeCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHh
Q 011290 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (489)
Q Consensus 107 ~rpkr~lviiNP~sG~~~a~~~~~~~v~p~l~~a~i~~~v~~T~~~~ha~el~~~~~~~~~d~IV~vGGDGtl~EVvnGL 186 (489)
++.+.+.|++. .....--..+ .+-++..+++.|+.+.+..+..... .+... ++|+||+.+.|-+ .+.+..+
T Consensus 6 ~~~~~Igvi~~-~~~~~~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~-----~~~~~-~vdgiI~~~~~~~-~~~~~~l 76 (277)
T 3cs3_A 6 RQTNIIGVYLA-DYGGSFYGEL-LEGIKKGLALFDYEMIVCSGKKSHL-----FIPEK-MVDGAIILDWTFP-TKEIEKF 76 (277)
T ss_dssp CCCCEEEEEEC-SSCTTTHHHH-HHHHHHHHHTTTCEEEEEESTTTTT-----CCCTT-TCSEEEEECTTSC-HHHHHHH
T ss_pred cCCcEEEEEec-CCCChhHHHH-HHHHHHHHHHCCCeEEEEeCCCCHH-----HHhhc-cccEEEEecCCCC-HHHHHHH
Confidence 45566777663 3222111222 2456777888898887776643211 11112 7999999998765 3555555
Q ss_pred hcCcCccccCCCcEEEec
Q 011290 187 LEREDWNDAIKVPLGVVP 204 (489)
Q Consensus 187 ~~~~~~~~~~~~plgiIP 204 (489)
... .+|+-.+-
T Consensus 77 ~~~-------~iPvV~~~ 87 (277)
T 3cs3_A 77 AER-------GHSIVVLD 87 (277)
T ss_dssp HHT-------TCEEEESS
T ss_pred Hhc-------CCCEEEEe
Confidence 443 57766653
No 309
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=20.01 E-value=67 Score=25.92 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=22.2
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhh
Q 011290 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (489)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (489)
+.+.|...++++.+.|.++|+..+.
T Consensus 95 ~~~lfqA~s~~e~~~Wi~ai~~~i~ 119 (122)
T 1dro_A 95 ALFLLQAHDDTEMSQWVTSLKAQSD 119 (122)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998764
Done!