Query 011293
Match_columns 489
No_of_seqs 180 out of 1533
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 23:44:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1169 Diacylglycerol kinase 100.0 1.4E-68 3E-73 568.3 25.6 375 11-441 220-628 (634)
2 KOG0782 Predicted diacylglycer 100.0 7.3E-57 1.6E-61 463.5 17.3 335 31-433 360-697 (1004)
3 KOG1170 Diacylglycerol kinase 100.0 3.6E-55 7.9E-60 465.0 8.0 385 8-435 156-795 (1099)
4 PRK13057 putative lipid kinase 100.0 3.6E-43 7.8E-48 353.8 32.0 274 40-433 1-285 (287)
5 PRK11914 diacylglycerol kinase 100.0 2.5E-42 5.4E-47 350.6 33.5 289 33-434 5-305 (306)
6 PRK13059 putative lipid kinase 100.0 1.4E-42 3.1E-47 350.9 31.5 281 36-433 1-293 (295)
7 TIGR03702 lip_kinase_YegS lipi 100.0 5E-42 1.1E-46 346.5 31.5 282 38-434 1-289 (293)
8 PRK13337 putative lipid kinase 100.0 1E-41 2.2E-46 345.9 30.9 284 36-434 1-295 (304)
9 PRK13055 putative lipid kinase 100.0 7.4E-42 1.6E-46 351.4 30.1 286 36-432 2-300 (334)
10 PRK13054 lipid kinase; Reviewe 100.0 2.1E-41 4.5E-46 343.1 32.6 286 35-435 2-296 (300)
11 PRK00861 putative lipid kinase 100.0 1E-40 2.2E-45 337.9 32.4 282 36-434 2-298 (300)
12 TIGR00147 lipid kinase, YegS/R 100.0 4E-40 8.7E-45 332.1 30.5 280 36-430 1-292 (293)
13 COG1597 LCB5 Sphingosine kinas 100.0 5.8E-40 1.2E-44 332.5 30.3 286 36-436 2-299 (301)
14 PLN02958 diacylglycerol kinase 100.0 1.8E-37 3.9E-42 332.1 29.9 312 18-431 82-464 (481)
15 PRK12361 hypothetical protein; 100.0 4.1E-37 8.9E-42 335.5 31.2 285 36-434 242-543 (547)
16 PLN02204 diacylglycerol kinase 100.0 2.5E-32 5.3E-37 293.1 31.3 318 34-433 157-598 (601)
17 PF00609 DAGK_acc: Diacylglyce 100.0 5.3E-34 1.1E-38 264.2 11.8 160 231-405 2-161 (161)
18 KOG1116 Sphingosine kinase, in 99.9 4.3E-22 9.4E-27 210.7 23.3 299 36-434 179-568 (579)
19 smart00045 DAGKa Diacylglycero 99.9 9.2E-23 2E-27 188.7 10.8 159 231-405 2-160 (160)
20 PF00781 DAGK_cat: Diacylglyce 99.9 1.4E-21 3E-26 174.4 12.5 123 38-183 1-127 (130)
21 smart00046 DAGKc Diacylglycero 99.9 4E-21 8.6E-26 170.5 11.7 100 40-154 1-101 (124)
22 KOG1115 Ceramide kinase [Lipid 99.6 4E-15 8.6E-20 151.0 16.6 303 36-431 158-507 (516)
23 KOG4435 Predicted lipid kinase 98.8 2.6E-08 5.5E-13 101.9 12.5 133 33-180 57-195 (535)
24 PRK03708 ppnK inorganic polyph 98.2 9.3E-06 2E-10 81.9 10.6 112 38-176 2-115 (277)
25 PRK02645 ppnK inorganic polyph 98.1 1.6E-05 3.5E-10 81.2 11.4 123 35-185 2-127 (305)
26 PRK03378 ppnK inorganic polyph 97.7 0.0002 4.4E-09 72.8 11.0 123 35-183 4-129 (292)
27 PRK14075 pnk inorganic polypho 97.5 0.036 7.9E-07 55.4 23.6 50 373-432 187-236 (256)
28 COG3199 Predicted inorganic po 97.5 0.00044 9.6E-09 70.6 9.0 58 103-173 100-157 (355)
29 PRK01231 ppnK inorganic polyph 97.4 0.0018 3.8E-08 66.1 12.4 121 36-184 4-129 (295)
30 PF01513 NAD_kinase: ATP-NAD k 97.1 0.0036 7.7E-08 63.4 10.8 69 102-184 75-143 (285)
31 PRK14077 pnk inorganic polypho 96.9 0.013 2.8E-07 59.5 12.8 117 32-176 6-123 (287)
32 PRK04539 ppnK inorganic polyph 96.8 0.018 3.8E-07 58.8 13.1 127 34-183 3-134 (296)
33 PRK03372 ppnK inorganic polyph 96.8 0.019 4.1E-07 58.9 13.0 125 34-179 3-134 (306)
34 PRK02155 ppnK NAD(+)/NADH kina 96.7 0.021 4.6E-07 58.1 12.3 123 36-184 5-130 (291)
35 PRK02649 ppnK inorganic polyph 96.7 0.034 7.3E-07 57.0 13.6 123 36-176 1-127 (305)
36 PRK01911 ppnK inorganic polyph 96.2 0.081 1.8E-06 53.9 13.1 124 38-183 2-130 (292)
37 PRK03501 ppnK inorganic polyph 96.1 0.069 1.5E-06 53.6 12.1 98 36-176 2-100 (264)
38 PLN02935 Bifunctional NADH kin 95.4 0.17 3.8E-06 54.9 12.3 127 32-176 190-321 (508)
39 PRK00561 ppnK inorganic polyph 95.0 0.3 6.6E-06 48.9 12.0 58 103-174 33-91 (259)
40 PRK14076 pnk inorganic polypho 94.9 0.41 8.9E-06 53.3 13.6 121 31-176 286-407 (569)
41 PRK04885 ppnK inorganic polyph 94.8 0.24 5.2E-06 49.8 10.8 95 39-177 3-97 (265)
42 PLN02727 NAD kinase 93.9 0.43 9.4E-06 55.1 11.2 125 31-175 673-801 (986)
43 PRK01185 ppnK inorganic polyph 93.4 0.63 1.4E-05 47.0 10.4 111 39-182 3-114 (271)
44 PLN02929 NADH kinase 91.4 1.1 2.5E-05 45.8 9.3 70 103-180 64-144 (301)
45 PRK02231 ppnK inorganic polyph 91.2 1.3 2.7E-05 44.8 9.4 59 103-175 42-101 (272)
46 PRK04761 ppnK inorganic polyph 89.2 0.54 1.2E-05 46.8 4.7 36 102-141 24-59 (246)
47 PF10254 Pacs-1: PACS-1 cytoso 86.6 3.3 7.2E-05 44.1 8.9 48 103-151 75-128 (414)
48 PRK09860 putative alcohol dehy 85.1 4.4 9.5E-05 42.8 9.1 124 14-152 5-153 (383)
49 cd08180 PDD 1,3-propanediol de 85.0 3.2 6.9E-05 42.9 7.9 44 103-147 78-127 (332)
50 cd08197 DOIS 2-deoxy-scyllo-in 84.7 3.4 7.3E-05 43.3 7.9 93 37-144 24-125 (355)
51 COG0061 nadF NAD kinase [Coenz 84.4 5.7 0.00012 40.2 9.2 70 103-186 55-124 (281)
52 cd08187 BDH Butanol dehydrogen 83.8 4.4 9.5E-05 42.7 8.4 124 14-152 3-151 (382)
53 cd08179 NADPH_BDH NADPH-depend 83.5 4.2 9.2E-05 42.7 8.2 122 15-151 2-148 (375)
54 COG1454 EutG Alcohol dehydroge 83.1 4.3 9.4E-05 42.9 7.9 125 13-152 2-151 (377)
55 cd08181 PPD-like 1,3-propanedi 82.5 4.5 9.7E-05 42.3 7.8 100 37-151 26-146 (357)
56 cd08171 GlyDH-like2 Glycerol d 82.4 1.4 3E-05 45.8 4.0 109 17-146 1-119 (345)
57 cd08176 LPO Lactadehyde:propan 82.2 4.4 9.5E-05 42.7 7.6 123 14-152 2-150 (377)
58 TIGR02638 lactal_redase lactal 80.4 6.5 0.00014 41.4 8.2 124 14-152 3-153 (379)
59 cd08186 Fe-ADH8 Iron-containin 79.8 7.9 0.00017 40.8 8.6 102 36-152 26-150 (383)
60 cd08169 DHQ-like Dehydroquinat 79.3 8.1 0.00018 40.2 8.4 94 36-144 23-124 (344)
61 cd08172 GlyDH-like1 Glycerol d 79.2 12 0.00026 38.9 9.6 92 36-147 23-118 (347)
62 cd08185 Fe-ADH1 Iron-containin 78.9 7.3 0.00016 41.0 8.0 102 37-152 26-153 (380)
63 TIGR03405 Phn_Fe-ADH phosphona 78.8 7.9 0.00017 40.4 8.2 99 37-150 24-147 (355)
64 PF00731 AIRC: AIR carboxylase 78.6 8.3 0.00018 35.5 7.2 81 48-142 8-89 (150)
65 PRK15454 ethanol dehydrogenase 78.0 8.7 0.00019 40.8 8.3 125 13-152 22-171 (395)
66 cd07766 DHQ_Fe-ADH Dehydroquin 77.3 11 0.00024 38.7 8.6 88 37-142 24-117 (332)
67 cd08188 Fe-ADH4 Iron-containin 76.4 9.9 0.00022 40.0 8.1 125 12-151 1-149 (377)
68 cd08183 Fe-ADH2 Iron-containin 76.0 15 0.00032 38.6 9.3 96 37-151 23-143 (374)
69 PRK15138 aldehyde reductase; P 75.6 12 0.00025 39.8 8.4 122 14-152 5-153 (387)
70 cd08194 Fe-ADH6 Iron-containin 75.6 17 0.00037 38.2 9.6 98 36-148 23-141 (375)
71 cd08195 DHQS Dehydroquinate sy 74.2 10 0.00022 39.3 7.5 92 36-139 24-119 (345)
72 PRK00002 aroB 3-dehydroquinate 73.4 13 0.00028 38.8 8.0 98 35-144 30-133 (358)
73 cd08173 Gro1PDH Sn-glycerol-1- 72.6 15 0.00033 37.9 8.3 89 36-144 25-115 (339)
74 cd08551 Fe-ADH iron-containing 71.1 18 0.00038 37.9 8.4 101 35-151 22-144 (370)
75 cd08189 Fe-ADH5 Iron-containin 70.4 22 0.00048 37.3 9.0 102 35-151 25-148 (374)
76 cd08170 GlyDH Glycerol dehydro 70.1 19 0.00042 37.3 8.4 96 37-151 23-123 (351)
77 cd08550 GlyDH-like Glycerol_de 68.8 13 0.00028 38.6 6.8 91 37-147 23-119 (349)
78 TIGR01357 aroB 3-dehydroquinat 68.2 19 0.00041 37.3 7.9 91 37-139 21-115 (344)
79 PRK09423 gldA glycerol dehydro 67.8 13 0.00029 38.9 6.6 118 13-151 3-130 (366)
80 KOG4180 Predicted kinase [Gene 67.4 2.9 6.2E-05 43.0 1.4 62 103-175 105-168 (395)
81 PRK10624 L-1,2-propanediol oxi 66.8 20 0.00043 37.8 7.8 124 14-152 4-154 (382)
82 cd08192 Fe-ADH7 Iron-containin 66.1 28 0.0006 36.4 8.7 98 35-147 23-145 (370)
83 cd08182 HEPD Hydroxyethylphosp 64.1 39 0.00086 35.3 9.4 45 103-148 77-142 (367)
84 PTZ00286 6-phospho-1-fructokin 63.8 20 0.00043 39.0 7.1 57 105-171 178-240 (459)
85 PRK00843 egsA NAD(P)-dependent 63.6 29 0.00062 36.2 8.1 112 13-144 6-124 (350)
86 cd08198 DHQS-like2 Dehydroquin 63.1 56 0.0012 34.5 10.2 94 35-140 29-134 (369)
87 TIGR02482 PFKA_ATP 6-phosphofr 61.5 32 0.0007 35.3 7.8 40 104-147 92-131 (301)
88 PLN02564 6-phosphofructokinase 60.2 21 0.00046 39.0 6.6 58 104-171 177-240 (484)
89 TIGR02483 PFK_mixed phosphofru 59.7 31 0.00067 35.8 7.5 44 104-152 95-141 (324)
90 PRK06203 aroB 3-dehydroquinate 59.6 57 0.0012 34.6 9.6 97 36-144 42-152 (389)
91 cd08174 G1PDH-like Glycerol-1- 58.9 59 0.0013 33.4 9.4 37 103-143 75-111 (331)
92 cd08178 AAD_C C-terminal alcoh 58.9 44 0.00095 35.4 8.7 49 103-152 78-154 (398)
93 PRK06830 diphosphate--fructose 58.4 24 0.00053 38.1 6.6 57 105-171 174-236 (443)
94 cd00763 Bacterial_PFK Phosphof 57.4 36 0.00079 35.2 7.5 38 104-146 93-130 (317)
95 cd08199 EEVS 2-epi-5-epi-valio 56.0 43 0.00093 35.1 7.9 33 105-139 90-122 (354)
96 cd08177 MAR Maleylacetate redu 54.2 49 0.0011 34.2 7.9 89 36-144 23-115 (337)
97 PRK14072 6-phosphofructokinase 53.3 43 0.00092 36.0 7.4 47 104-152 104-156 (416)
98 cd08184 Fe-ADH3 Iron-containin 53.2 72 0.0016 33.3 8.9 49 103-152 81-146 (347)
99 PF00465 Fe-ADH: Iron-containi 53.2 43 0.00094 34.9 7.4 99 38-152 23-144 (366)
100 PLN02834 3-dehydroquinate synt 52.2 52 0.0011 35.5 7.9 35 104-140 164-198 (433)
101 cd08193 HVD 5-hydroxyvalerate 52.1 54 0.0012 34.4 7.9 118 15-148 1-144 (376)
102 cd00363 PFK Phosphofructokinas 50.9 48 0.001 34.5 7.2 41 104-146 93-136 (338)
103 cd08191 HHD 6-hydroxyhexanoate 50.6 1E+02 0.0022 32.5 9.8 99 37-151 23-143 (386)
104 PRK03202 6-phosphofructokinase 49.5 54 0.0012 34.0 7.2 39 104-147 94-132 (320)
105 PLN00180 NDF6 (NDH-dependent f 49.0 3.7 8.1E-05 37.6 -1.2 13 109-121 130-142 (180)
106 PRK10586 putative oxidoreducta 48.3 1.3E+02 0.0029 31.5 10.1 38 103-144 86-123 (362)
107 PLN02884 6-phosphofructokinase 47.5 58 0.0013 34.9 7.3 57 105-171 145-207 (411)
108 PRK06555 pyrophosphate--fructo 46.1 53 0.0012 35.1 6.7 41 104-146 113-156 (403)
109 PRK13805 bifunctional acetalde 46.1 68 0.0015 37.7 8.2 95 13-123 455-558 (862)
110 COG1979 Uncharacterized oxidor 45.8 98 0.0021 32.4 8.2 88 14-112 5-94 (384)
111 cd08196 DHQS-like1 Dehydroquin 45.6 1.2E+02 0.0027 31.6 9.3 91 37-139 20-110 (346)
112 KOG2178 Predicted sugar kinase 44.5 12 0.00025 39.7 1.4 58 104-175 169-226 (409)
113 cd01836 FeeA_FeeB_like SGNH_hy 43.8 40 0.00086 31.0 4.9 60 105-172 43-102 (191)
114 cd04502 SGNH_hydrolase_like_7 43.7 23 0.00051 32.1 3.2 60 107-173 27-86 (171)
115 PF12219 End_tail_spike: Catal 42.7 12 0.00027 33.6 1.1 13 105-117 86-98 (160)
116 cd08175 G1PDH Glycerol-1-phosp 40.2 77 0.0017 32.8 6.8 34 103-140 80-113 (348)
117 cd01831 Endoglucanase_E_like E 39.5 42 0.00092 30.4 4.3 51 103-174 44-94 (169)
118 TIGR03590 PseG pseudaminic aci 39.4 1.6E+02 0.0034 29.5 8.7 35 96-139 234-268 (279)
119 cd08549 G1PDH_related Glycerol 39.3 96 0.0021 32.0 7.3 83 37-140 25-113 (332)
120 PF00365 PFK: Phosphofructokin 38.8 57 0.0012 33.1 5.4 40 104-147 93-132 (282)
121 PRK14071 6-phosphofructokinase 38.6 1.2E+02 0.0025 32.0 7.8 45 104-152 108-155 (360)
122 COG1691 NCAIR mutase (PurE)-re 37.2 54 0.0012 32.4 4.6 57 68-142 150-206 (254)
123 PF13685 Fe-ADH_2: Iron-contai 35.0 49 0.0011 33.0 4.2 38 103-144 75-112 (250)
124 PRK14021 bifunctional shikimat 34.7 1.6E+02 0.0035 32.6 8.6 43 103-147 269-313 (542)
125 PF05893 LuxC: Acyl-CoA reduct 34.3 1.8E+02 0.004 30.9 8.6 98 42-140 91-209 (399)
126 PF12138 Spherulin4: Spherulat 34.1 46 0.001 33.3 3.8 38 15-52 3-46 (253)
127 PF09026 CENP-B_dimeris: Centr 33.2 9.9 0.00021 32.2 -0.9 9 466-474 41-49 (101)
128 TIGR02478 6PF1K_euk 6-phosphof 32.9 1.1E+02 0.0024 35.4 7.1 43 104-146 479-523 (745)
129 PLN03028 pyrophosphate--fructo 32.2 1.2E+02 0.0027 34.2 7.0 47 105-153 175-229 (610)
130 PRK07085 diphosphate--fructose 31.9 1.2E+02 0.0026 33.9 6.9 75 105-187 166-249 (555)
131 PRK06756 flavodoxin; Provision 31.2 2.8E+02 0.006 24.6 8.2 29 37-67 2-30 (148)
132 TIGR02477 PFKA_PPi diphosphate 30.8 1.2E+02 0.0027 33.7 6.7 46 105-152 163-216 (539)
133 TIGR02478 6PF1K_euk 6-phosphof 28.9 1.6E+02 0.0035 34.1 7.5 43 104-146 95-155 (745)
134 cd01839 SGNH_arylesterase_like 28.2 1E+02 0.0022 28.9 5.0 40 130-173 78-117 (208)
135 cd00764 Eukaryotic_PFK Phospho 25.9 1.8E+02 0.004 33.8 7.2 43 104-146 98-158 (762)
136 COG0337 AroB 3-dehydroquinate 25.6 2.6E+02 0.0057 29.5 7.7 99 29-139 26-128 (360)
137 cd00765 Pyrophosphate_PFK Phos 25.5 1.7E+02 0.0038 32.6 6.7 41 105-147 168-211 (550)
138 PTZ00287 6-phosphofructokinase 24.9 1.5E+02 0.0033 36.7 6.5 48 104-153 929-984 (1419)
139 TIGR01162 purE phosphoribosyla 24.2 3.1E+02 0.0068 25.4 7.1 72 53-142 11-87 (156)
140 PRK05948 precorrin-2 methyltra 24.1 6.9E+02 0.015 24.5 11.2 48 103-152 92-144 (238)
141 cd01841 NnaC_like NnaC (CMP-Ne 23.6 76 0.0016 28.6 3.0 60 105-172 26-86 (174)
142 cd02007 TPP_DXS Thiamine pyrop 23.2 1.8E+02 0.0039 27.6 5.6 63 104-170 97-176 (195)
143 PF03641 Lysine_decarbox: Poss 23.1 83 0.0018 27.9 3.1 35 104-138 55-91 (133)
144 cd01840 SGNH_hydrolase_yrhL_li 22.8 2.1E+02 0.0046 25.4 5.8 51 108-171 26-77 (150)
145 cd01844 SGNH_hydrolase_like_6 22.7 1.3E+02 0.0028 27.4 4.5 58 105-174 34-91 (177)
146 PTZ00468 phosphofructokinase f 22.5 1.8E+02 0.0038 35.8 6.4 47 105-153 198-252 (1328)
147 PLN02251 pyrophosphate-depende 22.2 2.4E+02 0.0053 31.6 7.1 42 105-148 192-236 (568)
148 KOG1830 Wiskott Aldrich syndro 21.9 42 0.00092 35.8 1.1 18 449-466 501-518 (518)
149 PTZ00468 phosphofructokinase f 21.5 1.5E+02 0.0032 36.5 5.4 79 105-188 802-891 (1328)
150 COG0205 PfkA 6-phosphofructoki 21.2 4.8E+02 0.01 27.4 8.6 40 103-146 94-133 (347)
151 cd00764 Eukaryotic_PFK Phospho 21.1 4.8E+02 0.01 30.5 9.3 42 104-146 479-523 (762)
152 COG0707 MurG UDP-N-acetylgluco 20.7 3.4E+02 0.0073 28.5 7.5 86 48-142 190-283 (357)
153 TIGR00730 conserved hypothetic 20.4 1.1E+02 0.0025 28.7 3.6 33 104-137 98-132 (178)
154 cd01822 Lysophospholipase_L1_l 20.4 1E+02 0.0022 27.6 3.2 59 108-173 42-100 (177)
155 TIGR03846 sulfopy_beta sulfopy 20.3 3.4E+02 0.0074 25.3 6.8 77 104-180 59-153 (181)
No 1
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-68 Score=568.34 Aligned_cols=375 Identities=37% Similarity=0.662 Sum_probs=307.2
Q ss_pred ccccccccceeecCCCCCc--------------------------ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhc
Q 011293 11 SLKEFYIPSYVLLPDSESE--------------------------TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLN 64 (489)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~ 64 (489)
.+++..+|++++.+..... .....+.+|++||+||+||+++|..++..++.+|+
T Consensus 220 ~~~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PLlVfvNpKSGg~~G~~ll~~f~~lLn 299 (634)
T KOG1169|consen 220 ELKDHILPPSTLRPARTARVASDHSGLPGEKSEEVTDAKKMQQLLVTDPPDWRPLLVFVNPKSGGQQGERLLRRFRYLLN 299 (634)
T ss_pred hhhhccCCceeeecccccccccccccccccccccccccccccccccCCCCCCcceEEEEecCCcccccHHHHHHHHHhcC
Confidence 5677779988887765441 13355678999999999999999999999999999
Q ss_pred cCCeEEEEccC-chhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCC---CCCcEEEeeCC
Q 011293 65 KNQVFDVGEEA-PDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLS---HPPPIATVPLG 140 (489)
Q Consensus 65 ~~~V~dl~~~~-p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~---~~~plgiIP~G 140 (489)
+.|||+|...+ |..++. +++.+ ...+|+||||||||+||++.+.+++.. ..||+||+|+|
T Consensus 300 p~QVfdl~~~~~p~~gL~-l~~~~---------------~~~riLVcGGDGTvGWVL~~i~~~n~~~~~~~PpVAilPLG 363 (634)
T KOG1169|consen 300 PVQVFDLLKRGGPRPGLT-LFRDV---------------PDFRILVCGGDGTVGWVLGCIDKLNKQNAIPPPPVAILPLG 363 (634)
T ss_pred hhhEEecccCCCCchhHH-HHHhC---------------CcceEEEecCCCcchhhhhhHHHhhccccCCCCCeEEEecC
Confidence 99999999864 887776 55543 356999999999999999999876433 48999999999
Q ss_pred CCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCCCCCCCCCCCCCCcccccccccccccccc
Q 011293 141 TGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKEGSCDPIAPLELPHSLHAFGRVSATDELN 220 (489)
Q Consensus 141 TGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~ 220 (489)
|||||||+|+||.++|+.+.. +.++|+.+..|.+.++|.|+|.+.+.+... . +.+.+..
T Consensus 364 TGNDLsR~l~WGgg~~g~~~~-~~~iL~~i~~a~v~~lDrW~v~v~~~~~~~-----~-----~~~~~~~---------- 422 (634)
T KOG1169|consen 364 TGNDLSRVLRWGGGYPGEDRN-LIKILKDIEEAPVTKLDRWKVLVEPQSGEL-----V-----QYSLKPP---------- 422 (634)
T ss_pred CCCchHhhcCCCCCCCcchhh-HHHHHHhhhhccceecceeeEEeecccccc-----c-----cccccCC----------
Confidence 999999999999999887655 999999999999999999999987653210 0 0000000
Q ss_pred ccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHhhhcccccccccCCCCcCccceEEEEEEe
Q 011293 221 KEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLGCTQGWFFASLVHPSSHNIAQLAKVKVMK 300 (489)
Q Consensus 221 ~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g~~~~~~~~~l~~~~~k~~~~~~~i~v~~ 300 (489)
..+.......|+||||||+||+|+++||.+|+++|+||++|+.||++|+..|++. ||++++. ++...+++..
T Consensus 423 ~~~~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q~-~f~~~ck-----~~~~~i~i~~-- 494 (634)
T KOG1169|consen 423 EKGDPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQE-TFAARCK-----NLHLHIKIEL-- 494 (634)
T ss_pred CcCCCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecchh-hHHHhhc-----CCccceEEEE--
Confidence 0111233568999999999999999999999999999999999999999999865 8887653 4322344444
Q ss_pred cCCeEEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCCCcEEEEEecchhHHHHHHccCCCceeEE
Q 011293 301 KCGQWRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDDGLLEVVGFRDAWHGLVLYAPSGHGTRLA 380 (489)
Q Consensus 301 ~dg~~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dDG~LeVv~~~~~~~~~~l~~~~g~~~~l~ 380 (489)
+++++++++|.++.+|+++|+||||||.++||+.+..+...+.+.....+||++||+++++.||++..++...+..|++
T Consensus 495 -~~d~~dl~~p~sleGIv~LNIpS~ggG~nlWg~~~~~~~~~~~~~~~d~~dgliEvvgv~~~~h~~~~qvgL~~a~rig 573 (634)
T KOG1169|consen 495 -DGDGEDLELPKSLEGIVVLNIPSWGGGSNLWGNSNKSKGNFRGFSEADDDDGLIEVVGVQDSWHLLQEQVGLESALRIG 573 (634)
T ss_pred -cccceEccCCCCceeEEEEcccccccCcccccccCccccccccccccCCCcCeEEEEEeccchhhhhhhhccchhhHHH
Confidence 6777799999899999999999999999999998888777777778888899999999999999999888888888888
Q ss_pred E---e-eEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEEEEeCCeeeEEecCCCCCCccc
Q 011293 381 Q---A-HRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVEISHHGQVNILATRDCQSKSVR 441 (489)
Q Consensus 381 q---~-~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~~~~v~~L~~~~~~~~~~~ 441 (489)
| . ..++|...+ ..|||||||||+|+ |.+|+|+|++++.||++.++...+..
T Consensus 574 Q~~a~~~~~~i~~~k----~~PMQiDGEPW~Q~------p~tI~Ithk~q~~mL~~~~~~~~~~~ 628 (634)
T KOG1169|consen 574 QRLAQCSERVIGTKK----TFPMQIDGEPWMQP------PCTIEITHKNQAPMLMKAAKEKRRRF 628 (634)
T ss_pred HHhhccEEEEecccc----CcceecCCccccCC------CceEEEEecchHhhhhcccccccCcc
Confidence 6 2 334466665 89999999999997 79999999999999998776544433
No 2
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-57 Score=463.50 Aligned_cols=335 Identities=35% Similarity=0.625 Sum_probs=274.9
Q ss_pred cCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCeEEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEE
Q 011293 31 VPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQVFDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVA 110 (489)
Q Consensus 31 ~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~ 110 (489)
.+..+++|++|||||+|||++|.+.++.+.-+||+.|||||+..+|..+++ +++++ -+++|++|
T Consensus 360 tsSplmkPLLVFVNPKSGGNqGsK~lq~f~WyLNPRQVFDlsq~GPK~aLE-myRKV---------------~nLRILaC 423 (1004)
T KOG0782|consen 360 TSSPLMKPLLVFVNPKSGGNQGSKALQTFCWYLNPRQVFDLSQLGPKFALE-MYRKV---------------VNLRILAC 423 (1004)
T ss_pred CCCCCCCceEEEecCCCCCcchHHHHHHHHHhcChhhheehhccCcHHHHH-HHHhc---------------cceEEEEe
Confidence 466788999999999999999999999999999999999999999999997 88865 25899999
Q ss_pred cCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCC
Q 011293 111 GGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAP 190 (489)
Q Consensus 111 GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~ 190 (489)
||||||+|++..|.++++...||+||+|+||||||||.|+||.+ ...+.+-+++.++..+.+..+|.|.+.+....
T Consensus 424 GGDGTVGWiLStLD~L~l~p~PPvailPLGTGNDLARtlnWGGg---ytDEPvSkil~~ve~gtvVqLDRW~lhvEpNp- 499 (1004)
T KOG0782|consen 424 GGDGTVGWILSTLDNLNLPPYPPVAILPLGTGNDLARTLNWGGG---YTDEPVSKILQAVEHGTVVQLDRWRLHVEPNP- 499 (1004)
T ss_pred cCCCceeehhhhhhhcCCCCCCCeeEeecCCcchHHHhcccCCC---cCcchHHHHHHHHhcCcEEeeeeeeecccCCC-
Confidence 99999999999999999999999999999999999999999974 44567889999999999999999998764321
Q ss_pred CCCCCCCCCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHH
Q 011293 191 KEGSCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAK 270 (489)
Q Consensus 191 ~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~ 270 (489)
+|.+ .. +.|.....- .-..|.||||+||||.|..+||..|+.||++|++|++||+.|+-
T Consensus 500 ---~~~p-------Ee--------~ddG~~~~L---PL~VfnNYFSlGfDAHVtLeFHeSReANPekfNSRfrNkmfYaG 558 (1004)
T KOG0782|consen 500 ---SCNP-------EE--------EDDGMQSAL---PLTVFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAG 558 (1004)
T ss_pred ---CCCh-------hh--------hcccchhcc---chhHhhccccccccceEEEEeccccccCHHHHHHHHhhhhhhcc
Confidence 1211 00 001100000 01269999999999999999999999999999999999999999
Q ss_pred HhhhcccccccccCCCCcCccceEEEEEEecCCeE---EEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCC
Q 011293 271 LGCTQGWFFASLVHPSSHNIAQLAKVKVMKKCGQW---RDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTP 347 (489)
Q Consensus 271 ~g~~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg~~---~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~ 347 (489)
.++.. ++.++++.+.+.+++.+ ||.- +.-++ ++..|+++|+|+|.+|..+||++... -++.+
T Consensus 559 ~afsD------fl~rSskDL~khi~vvC---DG~DlTPkIqeL--K~qCivFlNIprYcaGTmPWG~pgdh----hDfeP 623 (1004)
T KOG0782|consen 559 LAFSD------FLKRSSKDLCKHITVVC---DGVDLTPKIQEL--KLQCIVFLNIPRYCAGTMPWGEPGDH----HDFEP 623 (1004)
T ss_pred hhHHH------HHhhhhHHhhhheEEEe---cCccCChhhhhc--ccceEEEecchhhhcCccCCCCCCcc----ccCCc
Confidence 99987 55667888887777776 6641 10112 45789999999999999999998543 23567
Q ss_pred CCcCCCcEEEEEecchhHHHHHHccCCCceeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEEEEeCCee
Q 011293 348 PYVDDGLLEVVGFRDAWHGLVLYAPSGHGTRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVEISHHGQV 427 (489)
Q Consensus 348 a~~dDG~LeVv~~~~~~~~~~l~~~~g~~~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~~~~v 427 (489)
++.+||++||++|.-.+ ++. +-.-||+-|++||++|.+.+.+ .++||+||||...- |.+|+|...+++
T Consensus 624 qrhdDGyvEViGFTmas-LAA-LQvGGhGERl~QCreV~l~T~K----aIPmQVDGEPC~LA------ps~Iri~lrnqa 691 (1004)
T KOG0782|consen 624 QRHDDGYVEVIGFTMAS-LAA-LQVGGHGERLAQCREVRLITNK----AIPMQVDGEPCLLA------PSIIRIGLRNQA 691 (1004)
T ss_pred cccCCceEEEEeeeHHH-HHH-HhhcCcchhhhhceeEEEEecc----ccceeecCcchhcc------hhheEEeecccc
Confidence 88999999999997543 222 2235799999999999988876 79999999998763 799999999999
Q ss_pred eEEecC
Q 011293 428 NILATR 433 (489)
Q Consensus 428 ~~L~~~ 433 (489)
+|+-..
T Consensus 692 ~Mvqk~ 697 (1004)
T KOG0782|consen 692 PMVQKE 697 (1004)
T ss_pred hHHHHH
Confidence 999653
No 3
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=100.00 E-value=3.6e-55 Score=465.01 Aligned_cols=385 Identities=33% Similarity=0.582 Sum_probs=303.7
Q ss_pred ccccccccc---cc-ceeecCCCCC------cccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCeEEEEccCch
Q 011293 8 QSASLKEFY---IP-SYVLLPDSES------ETVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQVFDVGEEAPD 77 (489)
Q Consensus 8 ~~~~~~~~~---~~-~~~~~~~~~~------~~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V~dl~~~~p~ 77 (489)
..|.|++-. || +.+..++.++ ..+...+.+|++||+|.+||..+|.+++++++++|++.||||+..++|+
T Consensus 156 ~~cs~~~~~~svi~ptal~~~~~dg~~v~~~~a~~~~~~spllv~insksgd~qg~~~lrkfkq~lnp~qVfdll~~gp~ 235 (1099)
T KOG1170|consen 156 RACSLGHSALSVIPPTALKEVTPDGTAVFWEEAYGGPCGSPLLVFINSKSGDSQGQRFLRKFKQILNPIQVFDLIAGGPD 235 (1099)
T ss_pred hhcccccccccccChhhhcccCCCcceeehhhhcCCCCCCceeEeecccCCCchhHHHHHhhhhhcCHHHHHHHHccCcc
Confidence 345555544 55 6666666554 2556677799999999999999999999999999999999999888999
Q ss_pred hHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCC
Q 011293 78 KALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPG 157 (489)
Q Consensus 78 ~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~ 157 (489)
-++. ++..+ ..++|+||||||+|+||+..+..++++.+..++++|+|||||+||.|||+..++.
T Consensus 236 ~gL~-~f~~~---------------d~friLvcggdGsv~wvls~~ds~~lh~kcql~vlplgtgndlarvlgwg~a~~d 299 (1099)
T KOG1170|consen 236 FGLT-FFSHF---------------ESFRILVCGGDGSVGWVLSAIDRLNLHSKCQLAVLPLGTGNDLARVLGWGHAFYD 299 (1099)
T ss_pred hhhh-hhhcc---------------cceEEEEecCCCCCcchHHHHHhccchhhcccccccCCChHHHHHHhcccccCch
Confidence 8886 66544 3689999999999999999999888999999999999999999999999976544
Q ss_pred CChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCC---------------------------------------------
Q 011293 158 TDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKE--------------------------------------------- 192 (489)
Q Consensus 158 ~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~--------------------------------------------- 192 (489)
+ ..+.++++.+.++.++.+|.|.+-..- .+..
T Consensus 300 d--t~~p~il~~~eRastkmldrwsvm~~e-~~~~~~~~~~~~~v~~~~~~~e~~~i~~~e~q~~t~l~kiL~s~~~t~~ 376 (1099)
T KOG1170|consen 300 D--TLLPQILRTMERASTKMLDRWSVMAIE-GPQADAVRRYIEKVETFLEAEETWDIIHAENQLATTLRKILHSVSHTYS 376 (1099)
T ss_pred h--hccHHHHHHHHhhhhhhhhcchhhhhh-ccccchHHHHHHHHHHhcccchhhhhhhhhhhhhhhHHhhhccccchhh
Confidence 3 345689999999999999999864311 1100
Q ss_pred ------------------------------------CCCCC---------------------------------------
Q 011293 193 ------------------------------------GSCDP--------------------------------------- 197 (489)
Q Consensus 193 ------------------------------------g~~~~--------------------------------------- 197 (489)
=.|++
T Consensus 377 i~~~~~~c~~~~~f~~k~~ka~~s~~~nl~~s~a~~~k~spa~e~~~~~~~~~~~es~assv~~~~t~~~~~~l~~gt~~ 456 (1099)
T KOG1170|consen 377 ILENNTLCTKREDFVKKRSKATPSVLSNLSSSSACSPKCSPAGEDLPQLFEILHSESSASSVLTALSARTYDELEIGTVH 456 (1099)
T ss_pred hhhhccccchHHHHHHHHhhcccchhccCCchhhccccCCccccchhHHHHHhhhhhhhhhccCCCchhhhhhhhhcccc
Confidence 00000
Q ss_pred -----------------CCC-C-----CCCc---c--------------------------------------cccc---
Q 011293 198 -----------------IAP-L-----ELPH---S--------------------------------------LHAF--- 210 (489)
Q Consensus 198 -----------------~~~-~-----~~p~---~--------------------------------------~~~~--- 210 (489)
+.+ + +||+ + .|..
T Consensus 457 ~~~~g~t~~p~~~~~~~~~~~i~~~r~eL~~kans~kks~s~~i~~te~a~De~~~~~~~~L~eseekm~~ks~~~~~~s 536 (1099)
T KOG1170|consen 457 PPTPGATREPSTAYDDDEENEIVENRKELDQKANSLKKSVSTIIDITEGAPDEPRIYSDTTLNESEEKMKSKSLHPICSS 536 (1099)
T ss_pred CCCCCccCCCCccccchhhhhhcccHHHHhHHhhhhhccHHHhHHHhhcCCCcccccchhhhhhhHhhhhhccCCCcccC
Confidence 000 0 0000 0 0000
Q ss_pred -------------------cc-------------cc-----cccccc--------------ccCCcc-----e--eceEE
Q 011293 211 -------------------GR-------------VS-----ATDELN--------------KEGYHT-----F--RGGFW 232 (489)
Q Consensus 211 -------------------~~-------------~~-----~~d~~~--------------~~~~~~-----~--~~~F~ 232 (489)
.| .+ ..|+++ +.+.+- + .=.|+
T Consensus 537 e~d~~~~~~s~~~~~~spl~rl~s~~~ls~ggs~~s~~~~~d~dtl~al~~~~~~p~~d~g~seS~L~sa~~y~EkCVMN 616 (1099)
T KOG1170|consen 537 EDDMKQHSDSSLYADYSPLERLSSGGGLSAGGSTLSPARASDSDTLSALKERKRTPGSDLGLSESHLRSAGQYKEKCVMN 616 (1099)
T ss_pred ccccccccchhhccccchhhccCCCCCcccCccccCcccccccchhhhhhccccCCcccccccccccccccchhhhhhhc
Confidence 00 00 001111 000000 0 01589
Q ss_pred EEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHhhhcccccccccCCCCcCccceEEEEEEecCCeEEEEeccC
Q 011293 233 NYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLGCTQGWFFASLVHPSSHNIAQLAKVKVMKKCGQWRDLEIPS 312 (489)
Q Consensus 233 N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g~~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg~~~~l~~~~ 312 (489)
||||||+||.|+..||..|+.||+|+.+|.+|++||+++|.|+ |+|++||++.|++.+++ ||+ ++.+|
T Consensus 617 NYFGIGlDAKISLDFhnKReEhPeKcrSR~kn~MWYGvLGtKe------LLhrTyrnLEQRV~LEC---DG~--~i~lP- 684 (1099)
T KOG1170|consen 617 NYFGIGLDAKISLDFHNKREEHPEKCRSRSKNFMWYGVLGTKE------LLHRTYRNLEQRVKLEC---DGV--PIDLP- 684 (1099)
T ss_pred cccccccceeEeeecccccccChHHHhHHhhhcchhhhcchHH------HHHHHHHhHHHHeeeec---CCc--ccCCc-
Confidence 9999999999999999999999999999999999999999999 99999999999888877 898 67887
Q ss_pred ceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCCCcEEEEEecchhHHHHHHccCCCceeEEEeeEEEEEEecC
Q 011293 313 SIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDDGLLEVVGFRDAWHGLVLYAPSGHGTRLAQAHRICFEFHKG 392 (489)
Q Consensus 313 ~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dDG~LeVv~~~~~~~~~~l~~~~g~~~~l~q~~~i~I~~~~~ 392 (489)
++++|+|+|+|||.||.|+||.+. .++.+..+++||+.||||.+=+..+++...+.+-+|.|++||++|+|.+..
T Consensus 685 ~LQGIviLNIpSyaGGtNFWGsnk----~dd~f~apSfDDriLEVVAvFGsvqMA~SRvI~LqhHRIAQCr~V~I~IlG- 759 (1099)
T KOG1170|consen 685 SLQGIVILNIPSYAGGTNFWGSNK----DDDEFTAPSFDDRILEVVAVFGSVQMATSRVIRLQHHRIAQCRHVRIVILG- 759 (1099)
T ss_pred ccceeEEEecccccCcccccCCCC----CCCcccCCCcccceeEEeeeehhHHHHHHHHHHhhhhhhhhceEEEEEEec-
Confidence 899999999999999999999874 356688999999999999987777776666666788999999999999987
Q ss_pred CCCccccccCCcccCCCCCCCCCcEEEEEEeCCeeeEEecCCC
Q 011293 393 GADHTFMRIDGEPWKQPLPVDDDTVVVEISHHGQVNILATRDC 435 (489)
Q Consensus 393 ~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~~~~v~~L~~~~~ 435 (489)
++++++|+|||+|.|| |.+|+|.|+++++||++++.
T Consensus 760 -DE~IPVQvDGEaWlQP------PG~irIvHKNRaQmL~Rnr~ 795 (1099)
T KOG1170|consen 760 -DEGIPVQVDGEAWLQP------PGIIRIVHKNRAQMLARNRV 795 (1099)
T ss_pred -CCCCceeecCccccCC------CceeeeehhhhHHHhhcchH
Confidence 6899999999999998 79999999999999999864
No 4
>PRK13057 putative lipid kinase; Reviewed
Probab=100.00 E-value=3.6e-43 Score=353.80 Aligned_cols=274 Identities=21% Similarity=0.259 Sum_probs=211.4
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHHH
Q 011293 40 LVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTAG 117 (489)
Q Consensus 40 lvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~ 117 (489)
+||+||.||+++ +.+..+++.|....+ +.+.. +.++++.+ +.+.++ .+.+.|||+|||||||
T Consensus 1 ~~I~Np~sg~~~--~~~~~i~~~l~~~g~~~~~~~t~~~~~a~~-~~~~~~-------------~~~d~iiv~GGDGTv~ 64 (287)
T PRK13057 1 LLLVNRHARSGR--AALAAARAALEAAGLELVEPPAEDPDDLSE-VIEAYA-------------DGVDLVIVGGGDGTLN 64 (287)
T ss_pred CEEECCCCCCcc--hhHHHHHHHHHHcCCeEEEEecCCHHHHHH-HHHHHH-------------cCCCEEEEECchHHHH
Confidence 479999999876 467888888876654 44443 45666543 443321 2457999999999999
Q ss_pred HHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCCCCCCC
Q 011293 118 WLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKEGSCDP 197 (489)
Q Consensus 118 ~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~g~~~~ 197 (489)
+|+|++.. ..+|||+||+||||||||+||++. ++.++++.|..++++++|+++++
T Consensus 65 ~v~~~l~~----~~~~lgiiP~GT~Ndfar~Lg~~~--------~~~~a~~~i~~~~~~~vD~g~~~------------- 119 (287)
T PRK13057 65 AAAPALVE----TGLPLGILPLGTANDLARTLGIPL--------DLEAAARVIATGQVRRIDLGWVN------------- 119 (287)
T ss_pred HHHHHHhc----CCCcEEEECCCCccHHHHHcCCCC--------CHHHHHHHHHcCCeEEeeEEEEC-------------
Confidence 99999973 578999999999999999999985 46778889999999999999872
Q ss_pred CCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHhhhccc
Q 011293 198 IAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLGCTQGW 277 (489)
Q Consensus 198 ~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g~~~~~ 277 (489)
.+||+|++|+|+||+|++.++..++ +..++++|++.+++.
T Consensus 120 ------------------------------~~~f~n~~g~G~da~v~~~~~~~~k--------~~~G~~aY~~~~~~~-- 159 (287)
T PRK13057 120 ------------------------------GHYFFNVASLGLSAELARRLTKELK--------RRWGTLGYAIAALRV-- 159 (287)
T ss_pred ------------------------------CEEEEEEEecCccHHHHHHhhHHhh--------ccCChhHHHHHHHHH--
Confidence 2599999999999999998875432 344689999999987
Q ss_pred ccccccCCCCcCccceEEEEEEecCCeEEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCCCcEEE
Q 011293 278 FFASLVHPSSHNIAQLAKVKVMKKCGQWRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDDGLLEV 357 (489)
Q Consensus 278 ~~~~l~~~~~k~~~~~~~i~v~~~dg~~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dDG~LeV 357 (489)
|+. ++++ .+++++ ||+.. .. ...+++|+|++|||||+.+ +|.+.++||+|||
T Consensus 160 ----l~~--~~~~--~~~l~~---d~~~~--~~--~~~~~~v~N~~~~gg~~~~-------------~p~a~~~DG~ldv 211 (287)
T PRK13057 160 ----LRR--SRPF--TAEIEH---DGRTE--RV--KTLQVAVGNGRYYGGGMTV-------------AHDATIDDGRLDL 211 (287)
T ss_pred ----Hhh--CCCe--EEEEEE---CCEEE--EE--EEEEEEEecCcccCCCccc-------------CCCCCCCCceEEE
Confidence 432 2332 334544 67633 22 3456889999999999988 7899999999999
Q ss_pred EEecchh--HHHHHH--ccCC-----CceeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEEEEeCCeee
Q 011293 358 VGFRDAW--HGLVLY--APSG-----HGTRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVEISHHGQVN 428 (489)
Q Consensus 358 v~~~~~~--~~~~l~--~~~g-----~~~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~~~~v~ 428 (489)
++++... .++.++ +..| ..++..++++++|++.+ ++++|+|||.+... |++|+|.+ +.++
T Consensus 212 ~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~~----~~~~~~DGE~~~~~------p~~i~v~p-~al~ 280 (287)
T PRK13057 212 YSLEVAHWWRLLALLPALRRGRHGEWPDVRAFRTTELELRTRK----PRPINTDGELTTYT------PAHFRVLP-KALR 280 (287)
T ss_pred EEecCCCHHHHHHHHHHHhcCCccCCCcEEEEEeeEEEEEeCC----CcEEeeCCccCCCC------CEEEEEEC-CeEE
Confidence 9998763 322221 2233 34788999999999875 78999999998763 79999996 6999
Q ss_pred EEecC
Q 011293 429 ILATR 433 (489)
Q Consensus 429 ~L~~~ 433 (489)
|+++.
T Consensus 281 v~~p~ 285 (287)
T PRK13057 281 VLAPP 285 (287)
T ss_pred EEcCC
Confidence 99964
No 5
>PRK11914 diacylglycerol kinase; Reviewed
Probab=100.00 E-value=2.5e-42 Score=350.61 Aligned_cols=289 Identities=19% Similarity=0.173 Sum_probs=218.3
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEE
Q 011293 33 DVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVA 110 (489)
Q Consensus 33 ~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~ 110 (489)
+.-+++++||+||.||++++.+.+.++.+.|....+ +.+.. +.++++.+ +++++. ..+.+.|||+
T Consensus 5 ~~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~-~a~~~~------------~~~~d~vvv~ 71 (306)
T PRK11914 5 RHEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARH-LVAAAL------------AKGTDALVVV 71 (306)
T ss_pred cCCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHH-HHHHHH------------hcCCCEEEEE
Confidence 456789999999999999999999888888876554 44332 45666554 444321 0245789999
Q ss_pred cCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCC
Q 011293 111 GGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAP 190 (489)
Q Consensus 111 GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~ 190 (489)
|||||||+|++++. ..++|||+||+||||||||+||++.. ++.++++.+.+++++.+|+++++..
T Consensus 72 GGDGTi~evv~~l~----~~~~~lgiiP~GT~NdfAr~lg~~~~-------~~~~a~~~i~~g~~~~iDlg~v~~~---- 136 (306)
T PRK11914 72 GGDGVISNALQVLA----GTDIPLGIIPAGTGNDHAREFGIPTG-------DPEAAADVIVDGWTETVDLGRIQDD---- 136 (306)
T ss_pred CCchHHHHHhHHhc----cCCCcEEEEeCCCcchhHHHcCCCCC-------CHHHHHHHHHcCCceEEEEEEEecC----
Confidence 99999999999996 35789999999999999999999841 3566778899999999999998421
Q ss_pred CCCCCCCCCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHH
Q 011293 191 KEGSCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAK 270 (489)
Q Consensus 191 ~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~ 270 (489)
++ ..+||+|++|+||||.|++..++.|+ + .++++|.+
T Consensus 137 -------------------------------~~---~~~~f~n~~~~G~~a~v~~~~~~~k~--------~-~G~~aY~~ 173 (306)
T PRK11914 137 -------------------------------DG---IVKWFGTVAATGFDSLVTDRANRMRW--------P-HGRMRYNL 173 (306)
T ss_pred -------------------------------CC---CcEEEEEEEeeehHHHHHHHHHhccc--------c-CCchhhHH
Confidence 00 03699999999999999987764332 2 36899999
Q ss_pred HhhhcccccccccCCCCcCccceEEEEEEecCC-eEEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCC
Q 011293 271 LGCTQGWFFASLVHPSSHNIAQLAKVKVMKKCG-QWRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPY 349 (489)
Q Consensus 271 ~g~~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg-~~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~ 349 (489)
.+++. +++ .+++ .+++++ || +. ++ ..+.+++|+|++|||||+.+ +|.++
T Consensus 174 ~~l~~------l~~--~~~~--~~~i~~---dg~~~--~~--~~~~~~~v~N~~~~GG~~~~-------------~p~a~ 223 (306)
T PRK11914 174 AMLAE------LSK--LRPL--PFRLVL---DGTEE--IV--TDLTLAAFGNTRSYGGGMLI-------------CPNAD 223 (306)
T ss_pred HHHHH------HHh--cCCC--cEEEEE---eCCeE--EE--eeEEEEEEeCcccccCCcee-------------CCCCc
Confidence 99887 432 2332 345555 56 42 22 25667999999999999988 89999
Q ss_pred cCCCcEEEEEecchhH--HHHHH--ccCC-----CceeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEE
Q 011293 350 VDDGLLEVVGFRDAWH--GLVLY--APSG-----HGTRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVE 420 (489)
Q Consensus 350 ~dDG~LeVv~~~~~~~--~~~l~--~~~g-----~~~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ie 420 (489)
++||+|||++++.... ++.++ +..| ..++..++++++|+.. ++++++|||+.... |++|+
T Consensus 224 ~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~i~i~~~-----~~~~~~DGE~~~~~------p~~i~ 292 (306)
T PRK11914 224 HTDGLLDITMVQSASRTRLLRLFPTVFKGTHVELDEVSTARAKTVHVECP-----GINAYADGDFACPL------PAEIS 292 (306)
T ss_pred CCCCcEEEEEEecCCHHHHHHHHHHhcCCcccCCCcEEEEEeEEEEEEcC-----CcceecCCCcCCCC------ceEEE
Confidence 9999999999987632 22221 2333 2467789999998874 36899999998753 79999
Q ss_pred EEeCCeeeEEecCC
Q 011293 421 ISHHGQVNILATRD 434 (489)
Q Consensus 421 I~~~~~v~~L~~~~ 434 (489)
+.+ ++++|+++.+
T Consensus 293 v~p-~al~v~vp~~ 305 (306)
T PRK11914 293 AVP-GALQILRPRP 305 (306)
T ss_pred EEc-CeEEEECCCC
Confidence 996 6999999654
No 6
>PRK13059 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.4e-42 Score=350.89 Aligned_cols=281 Identities=20% Similarity=0.198 Sum_probs=209.7
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCc
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGD 113 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGD 113 (489)
+++++||+||.||++++.+.+..+++.|..... +.+.. ....+ .+ .++... .++.+.||++|||
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~-~~-~~~~~~------------~~~~d~vi~~GGD 66 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRISLEYD-LK-NAFKDI------------DESYKYILIAGGD 66 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEccCcch-HH-HHHHHh------------hcCCCEEEEECCc
Confidence 367999999999999988888888888876543 22211 22222 22 222111 1245789999999
Q ss_pred hHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCCC
Q 011293 114 GTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKEG 193 (489)
Q Consensus 114 GTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~g 193 (489)
||||+|+|+|... ..++|||+||+||||||||+||++. ++.++++.|..++++.+|+++++
T Consensus 67 GTv~evv~gl~~~--~~~~~lgviP~GTgNdfAr~lgi~~--------~~~~a~~~i~~g~~~~vDlg~v~--------- 127 (295)
T PRK13059 67 GTVDNVVNAMKKL--NIDLPIGILPVGTANDFAKFLGMPT--------DIGEACEQILKSKPKKVDLGKIN--------- 127 (295)
T ss_pred cHHHHHHHHHHhc--CCCCcEEEECCCCHhHHHHHhCCCC--------CHHHHHHHHHhCCcEEeeEEEEC---------
Confidence 9999999999742 3468999999999999999999985 47778888999999999999872
Q ss_pred CCCCCCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHhh
Q 011293 194 SCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLGC 273 (489)
Q Consensus 194 ~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g~ 273 (489)
.+||+|++|+|+||+|++.++...+ +..++++|++.++
T Consensus 128 ----------------------------------~~~f~n~~~~G~~a~v~~~~~~~~k--------~~~G~~aY~~~~~ 165 (295)
T PRK13059 128 ----------------------------------DKYFINVASTGLFTDVSQKTDVNLK--------NTIGKLAYYLKGL 165 (295)
T ss_pred ----------------------------------CEEEEEEEeeeechhhhhhccHHHh--------hCcchHHHHHHHH
Confidence 2599999999999999988764321 3446899999999
Q ss_pred hcccccccccCCCCcCccceEEEEEEecCCeEEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCCC
Q 011293 274 TQGWFFASLVHPSSHNIAQLAKVKVMKKCGQWRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDDG 353 (489)
Q Consensus 274 ~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg~~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dDG 353 (489)
++ +++ ++.+ .+++++ ||+. ++ ....+++|+|++|+|| +.+ +|.++++||
T Consensus 166 ~~------l~~--~~~~--~~~i~~---d~~~--~~--~~~~~~~v~N~~~~Gg-~~~-------------~p~a~~~DG 214 (295)
T PRK13059 166 EE------LPN--FRKL--KVKVTS---EEVN--FD--GDMYLMLVFNGQTAGN-FNL-------------AYKAEVDDG 214 (295)
T ss_pred HH------Hhc--CCCe--eEEEEE---CCEE--EE--eeEEEEEEEcCccccC-ccc-------------CCcccCCCC
Confidence 87 432 2322 344544 6653 22 2456788999998874 577 789999999
Q ss_pred cEEEEEecchh--HHHHHH--ccCC-----Cc-eeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEEEEe
Q 011293 354 LLEVVGFRDAW--HGLVLY--APSG-----HG-TRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVEISH 423 (489)
Q Consensus 354 ~LeVv~~~~~~--~~~~l~--~~~g-----~~-~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~ 423 (489)
+|||+++++.. .++.++ +..| .. ++..++++++|+..+ ++++|+|||+.... |++|++.+
T Consensus 215 ~Ldv~i~~~~~~~~~l~~~~~~~~G~~~~~~~~v~~~~~~~i~i~~~~----~~~~~~DGE~~~~~------p~~i~v~p 284 (295)
T PRK13059 215 LLDVIIIKACPIIDLIPLFIKVLKGEHLEDVNGLIYFKTDKLEIESNE----EIVTDIDGERGPDF------PLNIECIK 284 (295)
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHcCCccCCCccEEEEEeeEEEEEeCC----CceEEeCCCcCCCC------cEEEEEec
Confidence 99999998863 222221 2233 34 788899999998865 78999999998753 79999996
Q ss_pred CCeeeEEecC
Q 011293 424 HGQVNILATR 433 (489)
Q Consensus 424 ~~~v~~L~~~ 433 (489)
++++|+++.
T Consensus 285 -~al~v~~p~ 293 (295)
T PRK13059 285 -GGLKVLGIL 293 (295)
T ss_pred -CeeEEEecC
Confidence 699999963
No 7
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=100.00 E-value=5e-42 Score=346.52 Aligned_cols=282 Identities=19% Similarity=0.188 Sum_probs=206.9
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchH
Q 011293 38 PVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGT 115 (489)
Q Consensus 38 ~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGT 115 (489)
++++|+||+||.. +.+..+.+.|.+..+ |++.. +.++++.+ +++++. .++.+.|||+|||||
T Consensus 1 ~~~~I~N~~~~~~---~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~-~a~~~~------------~~~~d~vv~~GGDGT 64 (293)
T TIGR03702 1 KALLILNGKQADN---EDVREAVGDLRDEGIQLHVRVTWEKGDAQR-YVAEAL------------ALGVSTVIAGGGDGT 64 (293)
T ss_pred CEEEEEeCCccch---hHHHHHHHHHHHCCCeEEEEEecCCCCHHH-HHHHHH------------HcCCCEEEEEcCChH
Confidence 4789999998733 245555666766554 54433 45667654 554432 134578999999999
Q ss_pred HHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCCCCC
Q 011293 116 AGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKEGSC 195 (489)
Q Consensus 116 v~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~g~~ 195 (489)
||+|+|+|........+|||+||+||||||||+||++. ++.++++.+..++++++|++.++
T Consensus 65 i~ev~ngl~~~~~~~~~~lgiiP~GTgNdfAr~l~ip~--------~~~~a~~~i~~g~~~~iDlg~v~----------- 125 (293)
T TIGR03702 65 LREVATALAQIRDDAAPALGLLPLGTANDFATAAGIPL--------EPAKALKLALNGAAQPIDLARVN----------- 125 (293)
T ss_pred HHHHHHHHHhhCCCCCCcEEEEcCCchhHHHHhcCCCC--------CHHHHHHHHHhCCceeeeEEEEC-----------
Confidence 99999999742212357899999999999999999985 36777888999999999999872
Q ss_pred CCCCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHhhhc
Q 011293 196 DPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLGCTQ 275 (489)
Q Consensus 196 ~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g~~~ 275 (489)
+ .+||+|.+|+||||+|++.++...+ ++.++++|++.+++.
T Consensus 126 ---------------------------~----~~~f~n~~~~G~da~v~~~~~~~~k--------~~~G~~aY~~~~l~~ 166 (293)
T TIGR03702 126 ---------------------------G----KHYFLNMATGGFGTRVTTETSEKLK--------KALGGAAYLITGLTR 166 (293)
T ss_pred ---------------------------C----ccEEEEEeecccchHhhhhhhHHHH--------hccchHHHHHHHHHH
Confidence 0 1589999999999999988775332 345789999999987
Q ss_pred ccccccccCCCCcCccceEEEEEEecCCeEEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCCCcE
Q 011293 276 GWFFASLVHPSSHNIAQLAKVKVMKKCGQWRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDDGLL 355 (489)
Q Consensus 276 ~~~~~~l~~~~~k~~~~~~~i~v~~~dg~~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dDG~L 355 (489)
++. ++. .+++++. ++.. +. ....+++|+|++|||||+.+ +|.+.++||+|
T Consensus 167 ------l~~--~~~----~~~~i~~-~~~~--~~--~~~~~~~v~N~~~~GGg~~i-------------~P~A~~~DG~L 216 (293)
T TIGR03702 167 ------FSE--LTA----ASCEFRG-PDFH--WE--GDFLALGIGNGRQAGGGQVL-------------CPDALINDGLL 216 (293)
T ss_pred ------Hhh--CCC----eEEEEEE-CCEE--EE--eeEEEEEEECCCcCCCCcee-------------CCCCccCCceE
Confidence 431 222 2344433 4532 21 24567999999999999988 89999999999
Q ss_pred EEEEecchhHHHHHH--ccCC---CceeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEEEEeCCeeeEE
Q 011293 356 EVVGFRDAWHGLVLY--APSG---HGTRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVEISHHGQVNIL 430 (489)
Q Consensus 356 eVv~~~~~~~~~~l~--~~~g---~~~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~~~~v~~L 430 (489)
||++++..+.++.++ +..| .++...++++++|+..+ ++++|+|||.+... |++|++.+ ++++|+
T Consensus 217 dv~~v~~~~~~~~~l~~~~~g~~~~~~~~~~~~~i~i~~~~----~~~~~vDGE~~~~~------p~~i~v~p-~al~v~ 285 (293)
T TIGR03702 217 DVRILPAPELLPATLSTLFGGDKNPEFVRARLPWLEIEAPQ----PLTFNLDGEPLSGR------HFRIEVLP-GALRCH 285 (293)
T ss_pred EEEEeCCHHHHHHHHHHHhcCCCCCcEEEEEcCEEEEEeCC----CcEEEECCCcCCCc------eEEEEEEc-CeEEEE
Confidence 999998843332221 2333 23455677888888765 79999999998753 79999996 699999
Q ss_pred ecCC
Q 011293 431 ATRD 434 (489)
Q Consensus 431 ~~~~ 434 (489)
++..
T Consensus 286 ~p~~ 289 (293)
T TIGR03702 286 LPPG 289 (293)
T ss_pred cCCC
Confidence 9654
No 8
>PRK13337 putative lipid kinase; Reviewed
Probab=100.00 E-value=1e-41 Score=345.94 Aligned_cols=284 Identities=18% Similarity=0.177 Sum_probs=216.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCc
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGD 113 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGD 113 (489)
+++++||+||+||++++.+.+..+.+.|.+..+ |++.. +.++++.+ +.++++ .++.+.|||+|||
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~-~a~~~~------------~~~~d~vvv~GGD 67 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATL-AAERAV------------ERKFDLVIAAGGD 67 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHH-HHHHHH------------hcCCCEEEEEcCC
Confidence 468999999999999888888888888877665 55443 45666654 444332 1245789999999
Q ss_pred hHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCCC
Q 011293 114 GTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKEG 193 (489)
Q Consensus 114 GTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~g 193 (489)
||||+|+++|.. ...++|||+||.||||||||+||++. ++.++++.+..+.++++|+++++
T Consensus 68 GTl~~vv~gl~~--~~~~~~lgiiP~GT~NdfAr~lgi~~--------~~~~a~~~i~~g~~~~vDlg~vn--------- 128 (304)
T PRK13337 68 GTLNEVVNGIAE--KENRPKLGIIPVGTTNDFARALHVPR--------DIEKAADVIIEGHTVPVDIGKAN--------- 128 (304)
T ss_pred CHHHHHHHHHhh--CCCCCcEEEECCcCHhHHHHHcCCCC--------CHHHHHHHHHcCCeEEEEEEEEC---------
Confidence 999999999874 23568999999999999999999985 36777888999999999999872
Q ss_pred CCCCCCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHhh
Q 011293 194 SCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLGC 273 (489)
Q Consensus 194 ~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g~ 273 (489)
.++|+|.+|+|+||.|++.++... | +..++++|.+.++
T Consensus 129 ----------------------------------~~~fln~~g~G~~a~v~~~~~~~~-------k-~~~G~~aY~~~~~ 166 (304)
T PRK13337 129 ----------------------------------NRYFINIAGGGRLTELTYEVPSKL-------K-TMLGQLAYYLKGI 166 (304)
T ss_pred ----------------------------------CEEEEeeehhhHHHHHHHhcCHHH-------h-cCcccHHHHHHHH
Confidence 258999999999999998765322 2 2346899999988
Q ss_pred hcccccccccCCCCcCccceEEEEEEecCCeEEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCCC
Q 011293 274 TQGWFFASLVHPSSHNIAQLAKVKVMKKCGQWRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDDG 353 (489)
Q Consensus 274 ~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg~~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dDG 353 (489)
+. +.+ .+.+ .+++++ ||+.. + ....+++|+|+++||||+.+ +|.+.++||
T Consensus 167 ~~------l~~--~~~~--~~~i~~---d~~~~--~--~~~~~~~v~n~~~~gg~~~~-------------~p~a~~~DG 216 (304)
T PRK13337 167 EM------LPS--LKAT--DVRIEY---DGKLF--Q--GEIMLFLLGLTNSVGGFEKL-------------APDASLDDG 216 (304)
T ss_pred HH------Hhh--CCCc--eEEEEE---CCeEE--E--eEEEEEEEEcCcccCCcccc-------------CCcccCCCC
Confidence 76 432 2332 234444 67632 2 24567899999999999988 889999999
Q ss_pred cEEEEEecchh--HHHHHH--ccCC-----CceeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEEEEeC
Q 011293 354 LLEVVGFRDAW--HGLVLY--APSG-----HGTRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVEISHH 424 (489)
Q Consensus 354 ~LeVv~~~~~~--~~~~l~--~~~g-----~~~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~~ 424 (489)
+|||++++... .++.++ +..| ..++..++++++|+..+ ++++|+|||+.... |++|++.+
T Consensus 217 ~ldv~iv~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~~----~~~~~iDGE~~~~~------p~~i~v~p- 285 (304)
T PRK13337 217 YFDLIIVKKANLAELIHIATLALRGEHIKHPKVIYTKANRIKVSSFD----KMQLNLDGEYGGKL------PAEFENLY- 285 (304)
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHcCCcCCCCcEEEEEccEEEEEcCC----CCeEEeCCCcCCCC------CEEEEEec-
Confidence 99999998763 333221 2333 23677899999998865 78999999998853 79999996
Q ss_pred CeeeEEecCC
Q 011293 425 GQVNILATRD 434 (489)
Q Consensus 425 ~~v~~L~~~~ 434 (489)
+++++|+++.
T Consensus 286 ~al~v~~p~~ 295 (304)
T PRK13337 286 RHIEVFVPKD 295 (304)
T ss_pred ceEEEEeccc
Confidence 6999999543
No 9
>PRK13055 putative lipid kinase; Reviewed
Probab=100.00 E-value=7.4e-42 Score=351.40 Aligned_cols=286 Identities=18% Similarity=0.185 Sum_probs=215.7
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc--cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcC
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE--EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGG 112 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~--~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GG 112 (489)
+++++||+||+||++++.+.+..+++.|....+ +.+.. ..++++.+ +.+.+. .++.+.|||+||
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~-~~~~~~------------~~~~d~vvv~GG 68 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKN-EAKRAA------------EAGFDLIIAAGG 68 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHH-HHHHHh------------hcCCCEEEEECC
Confidence 468999999999999999999999999987655 44432 24455543 444321 123578999999
Q ss_pred chHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCC
Q 011293 113 DGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKE 192 (489)
Q Consensus 113 DGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~ 192 (489)
|||||+|+++|.. ....+|||+||+||||||||+||++.. ++.++++.+.+++++++|++.+.
T Consensus 69 DGTl~evvngl~~--~~~~~~LgiiP~GTgNdfAr~Lgi~~~-------~~~~a~~~l~~g~~~~vD~g~v~-------- 131 (334)
T PRK13055 69 DGTINEVVNGIAP--LEKRPKMAIIPAGTTNDYARALKIPRD-------NPVEAAKVILKNQTIKMDIGRAN-------- 131 (334)
T ss_pred CCHHHHHHHHHhh--cCCCCcEEEECCCchhHHHHHcCCCCc-------CHHHHHHHHHcCCcEEeeEEEEC--------
Confidence 9999999999974 235689999999999999999999841 25667788899999999999872
Q ss_pred CCCCCCCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHh
Q 011293 193 GSCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLG 272 (489)
Q Consensus 193 g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g 272 (489)
+ ++||+|.+|+|+||+|++.++..++ . ..++++|...+
T Consensus 132 -----------------------------~-----~~~F~n~ag~G~da~v~~~~~~~~k-------~-~~G~laY~~~~ 169 (334)
T PRK13055 132 -----------------------------E-----DKYFINIAAGGSLTELTYSVPSQLK-------S-MFGYLAYLAKG 169 (334)
T ss_pred -----------------------------C-----CcEEEEEehhccchHHHHhcCHHHH-------h-hccHHHHHHHH
Confidence 0 2699999999999999987764332 2 34689999999
Q ss_pred hhcccccccccCCCCcCccceEEEEEEecCCeEEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCC
Q 011293 273 CTQGWFFASLVHPSSHNIAQLAKVKVMKKCGQWRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDD 352 (489)
Q Consensus 273 ~~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg~~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dD 352 (489)
++. |++ ++.+ .+++++ ||+.. + ....+++|+|++++|||+.+ +|.+.++|
T Consensus 170 ~~~------l~~--~~~~--~~~i~~---d~~~~--~--~~~~~~~v~n~~~~Gg~~~~-------------~p~a~~~D 219 (334)
T PRK13055 170 AEL------LPR--VSPV--PVRITY---DEGVF--E--GKISMFFLALTNSVGGFEQI-------------VPDAKLDD 219 (334)
T ss_pred HHH------HHh--cCCe--eEEEEE---CCEEE--E--EEEEEEEEEcCcccCCcccc-------------CCCCcCCC
Confidence 887 432 2332 344544 66532 2 24567889999999999988 78999999
Q ss_pred CcEEEEEecchh--HHHHH--HccC-C-----CceeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEEEE
Q 011293 353 GLLEVVGFRDAW--HGLVL--YAPS-G-----HGTRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVEIS 422 (489)
Q Consensus 353 G~LeVv~~~~~~--~~~~l--~~~~-g-----~~~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~ 422 (489)
|+|+|+++++.. .++.+ .+.. | ..++..++++++|+... ..++++|+|||+.+.. |++|++.
T Consensus 220 G~ldv~i~~~~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~~~i~I~~~~--~~~~~~~iDGE~~~~~------pv~i~v~ 291 (334)
T PRK13055 220 GKFTLIIVKTANLFELLHLMALILNGGKHIDDPRVIYIKTSKLTIEPLG--DDRLMVNLDGEYGGDA------PMTFENL 291 (334)
T ss_pred ceEEEEEEcCCCHHHHHHHHHHHHhCCCCCCCCcEEEEEccEEEEEeCC--CCcceEeeCCCcCCCC------cEEEEEE
Confidence 999999998863 23222 1223 3 24778899999998753 1358999999998753 7999999
Q ss_pred eCCeeeEEec
Q 011293 423 HHGQVNILAT 432 (489)
Q Consensus 423 ~~~~v~~L~~ 432 (489)
+ ++++|+++
T Consensus 292 p-~al~v~~p 300 (334)
T PRK13055 292 K-QHIEFFAN 300 (334)
T ss_pred c-CeEEEEeC
Confidence 6 69999985
No 10
>PRK13054 lipid kinase; Reviewed
Probab=100.00 E-value=2.1e-41 Score=343.13 Aligned_cols=286 Identities=19% Similarity=0.200 Sum_probs=211.8
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcC
Q 011293 35 PRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGG 112 (489)
Q Consensus 35 ~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GG 112 (489)
++++++||+||++++ .+.+..+...|.+..+ |++.. +.++++.+ +++.+. .++.+.||++||
T Consensus 2 ~~~~~~~i~N~~~~~---~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~-~a~~~~------------~~~~d~vvv~GG 65 (300)
T PRK13054 2 TFPKSLLILNGKSAG---NEELREAVGLLREEGHTLHVRVTWEKGDAAR-YVEEAL------------ALGVATVIAGGG 65 (300)
T ss_pred CCceEEEEECCCccc---hHHHHHHHHHHHHcCCEEEEEEecCCCcHHH-HHHHHH------------HcCCCEEEEECC
Confidence 578999999999763 3455566666766554 55443 45666654 444321 134578999999
Q ss_pred chHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCC
Q 011293 113 DGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKE 192 (489)
Q Consensus 113 DGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~ 192 (489)
|||||+|+|++.......++|||+||+||||||||+||++. ++.++++.|.+++++.+|+++++
T Consensus 66 DGTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi~~--------~~~~a~~~i~~g~~~~iDlg~v~-------- 129 (300)
T PRK13054 66 DGTINEVATALAQLEGDARPALGILPLGTANDFATAAGIPL--------EPDKALKLAIEGRAQPIDLARVN-------- 129 (300)
T ss_pred ccHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCCCC--------CHHHHHHHHHhCCceEEEEEEEc--------
Confidence 99999999999753223468999999999999999999995 36778888999999999999872
Q ss_pred CCCCCCCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHh
Q 011293 193 GSCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLG 272 (489)
Q Consensus 193 g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g 272 (489)
+ ++||+|.+|+||||+|++..++.. | +..++++|+..+
T Consensus 130 ------------------------------~----~~~f~n~~~~G~~a~v~~~~~~~~-------k-~~~G~~~Y~~~~ 167 (300)
T PRK13054 130 ------------------------------D----RTYFINMATGGFGTRVTTETPEKL-------K-AALGGVAYLIHG 167 (300)
T ss_pred ------------------------------C----ceEEEEEeecchhHHHHHhhHHHH-------H-hccchHHHHHHH
Confidence 0 138999999999999998876422 2 345689999999
Q ss_pred hhcccccccccCCCCcCccceEEEEEEecCCeEEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCC
Q 011293 273 CTQGWFFASLVHPSSHNIAQLAKVKVMKKCGQWRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDD 352 (489)
Q Consensus 273 ~~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg~~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dD 352 (489)
++. ++. ++.+ +++++. |++.. + ....+++|+|++|+|||+.+ +|.+.++|
T Consensus 168 l~~------l~~--~~~~----~~~i~~-d~~~~--~--~~~~~~~v~N~~~~ggg~~~-------------~p~a~~~D 217 (300)
T PRK13054 168 LMR------MDT--LKPD----RCEIRG-PDFHW--Q--GDALVIGIGNGRQAGGGQQL-------------CPEALIND 217 (300)
T ss_pred HHH------Hhh--CCCe----EEEEEe-CCcEE--E--eeEEEEEEECCCcCCCCccc-------------CCCCcCCC
Confidence 987 432 2332 344433 56422 2 25678999999999999988 88999999
Q ss_pred CcEEEEEecchhHHHHH---HccCC----CceeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEEEEeCC
Q 011293 353 GLLEVVGFRDAWHGLVL---YAPSG----HGTRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVEISHHG 425 (489)
Q Consensus 353 G~LeVv~~~~~~~~~~l---~~~~g----~~~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~~~ 425 (489)
|+|||+++++.+..+.. ++..+ ..++..++++++|+..+ ++++|+|||++... |++|+|.+ +
T Consensus 218 G~ldv~~~~~~~~~l~~l~~~~~g~~~~~~~v~~~~~~~v~i~~~~----~~~~~iDGE~~~~~------p~~i~v~p-~ 286 (300)
T PRK13054 218 GLLDLRILPAPQELLPTLLSTLTGGSEDNPNIIRARLPWLEIQAPH----ELTFNLDGEPLSGR------HFRIEVLP-A 286 (300)
T ss_pred CeEEEEEECCHHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEcCC----CCEEEeCCCcCCCc------cEEEEEEc-C
Confidence 99999999882222221 11111 23677889999998754 79999999998753 79999996 6
Q ss_pred eeeEEecCCC
Q 011293 426 QVNILATRDC 435 (489)
Q Consensus 426 ~v~~L~~~~~ 435 (489)
+++||++..|
T Consensus 287 al~vl~p~~~ 296 (300)
T PRK13054 287 ALRCRLPPDC 296 (300)
T ss_pred eeEEEeCCCC
Confidence 9999997553
No 11
>PRK00861 putative lipid kinase; Reviewed
Probab=100.00 E-value=1e-40 Score=337.88 Aligned_cols=282 Identities=19% Similarity=0.198 Sum_probs=210.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCc
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGD 113 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGD 113 (489)
+++++||+||.||++++.+.++.++..|.+. + |++.. +.++++.+ +++... ..+.+.||++|||
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~-~~~~~~~t~~~~~a~~-~a~~~~------------~~~~d~vv~~GGD 67 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPE-MDLDIYLTTPEIGADQ-LAQEAI------------ERGAELIIASGGD 67 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhc-CceEEEEccCCCCHHH-HHHHHH------------hcCCCEEEEECCh
Confidence 4689999999999999888888888888763 3 44433 45566544 444321 1345789999999
Q ss_pred hHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCCC
Q 011293 114 GTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKEG 193 (489)
Q Consensus 114 GTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~g 193 (489)
||||+|++++.. +.+|||+||+||||||||+||++. ++.++++.|.+++++.+|++++.
T Consensus 68 GTl~evv~~l~~----~~~~lgviP~GTgNdfAr~lgi~~--------~~~~a~~~i~~g~~~~iDlg~vn--------- 126 (300)
T PRK00861 68 GTLSAVAGALIG----TDIPLGIIPRGTANAFAAALGIPD--------TIEEACRTILQGKTRRVDVAYCN--------- 126 (300)
T ss_pred HHHHHHHHHHhc----CCCcEEEEcCCchhHHHHHcCCCC--------CHHHHHHHHHcCCcEEeeEEEEC---------
Confidence 999999999973 578999999999999999999995 46778888999999999999872
Q ss_pred CCCCCCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHhh
Q 011293 194 SCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLGC 273 (489)
Q Consensus 194 ~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g~ 273 (489)
.+||+|.+|+||||+|++.+++.++ +..++++|++.++
T Consensus 127 ----------------------------------~~~fin~a~~G~~a~v~~~~~~~~k--------~~~G~~aY~~~~l 164 (300)
T PRK00861 127 ----------------------------------GQPMILLAGIGFEAETVEEADREAK--------NRFGILAYILSGL 164 (300)
T ss_pred ----------------------------------CEEEEEEEeccHHHHHHHHhhHHHH--------hcccHHHHHHHHH
Confidence 2589999999999999988764432 2346899999999
Q ss_pred hcccccccccCCCCcCccceEEEEEEecCCeEEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCCC
Q 011293 274 TQGWFFASLVHPSSHNIAQLAKVKVMKKCGQWRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDDG 353 (489)
Q Consensus 274 ~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg~~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dDG 353 (489)
+. ++. ++.+ .+++++ ||++. +. ...+++|+|++++++.+.. + .|.+.++||
T Consensus 165 ~~------l~~--~~~~--~~~i~~---dg~~~--~~--~~~~i~v~N~~~~~~~~~~-g-----------~p~a~~~DG 215 (300)
T PRK00861 165 QQ------LRE--LESF--EVEIET---EDQII--TT--NAVAVTVANAAPPTSVLAQ-G-----------PGAVIPDDG 215 (300)
T ss_pred HH------hcc--CCCe--eEEEEE---CCeEE--EE--EEEEEEEECCCCccccccc-C-----------CCCCCCCCc
Confidence 87 432 2332 234444 67632 22 3457999999866432211 0 357899999
Q ss_pred cEEEEEecchh--HHHH----HH--ccCC-----CceeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEE
Q 011293 354 LLEVVGFRDAW--HGLV----LY--APSG-----HGTRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVE 420 (489)
Q Consensus 354 ~LeVv~~~~~~--~~~~----l~--~~~g-----~~~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ie 420 (489)
+|||++++... .++. ++ +..| ..++..++++++|+..+ ++++|+|||..... |++|+
T Consensus 216 ~ldv~iv~~~~~~~~l~~~~~l~~~~~~g~~~~~~~v~~~~~~~i~I~~~~----~~~~~~DGE~~~~~------p~~i~ 285 (300)
T PRK00861 216 LLDVTIVAPKNLAEAVAASYHLLQTALQGNPAERDDIGYLRAKQVKITTDP----PQKVVIDGEVVGTT------PIEIE 285 (300)
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCCCCceEEEEccEEEEEeCC----CeEEEECCccCCCc------eEEEE
Confidence 99999998763 3321 11 2233 24788899999999875 78999999998753 79999
Q ss_pred EEeCCeeeEEecCC
Q 011293 421 ISHHGQVNILATRD 434 (489)
Q Consensus 421 I~~~~~v~~L~~~~ 434 (489)
|.+ +.++|+++++
T Consensus 286 v~p-~al~v~~p~~ 298 (300)
T PRK00861 286 CLP-RSLKVFAPLQ 298 (300)
T ss_pred EEC-CEEEEEeCCC
Confidence 996 6999999654
No 12
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=100.00 E-value=4e-40 Score=332.14 Aligned_cols=280 Identities=19% Similarity=0.240 Sum_probs=210.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCc
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGD 113 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGD 113 (489)
+++++||+||.||++.+.+.++.+++.|...++ +.+.. +.++++.+ +.+... ..+.+.||++|||
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~------------~~~~d~ivv~GGD 67 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAAR-YVEEAR------------KFGVDTVIAGGGD 67 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHH-HHHHHH------------hcCCCEEEEECCC
Confidence 468999999999999988999999998877665 55433 33434333 222111 0235789999999
Q ss_pred hHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCCC
Q 011293 114 GTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKEG 193 (489)
Q Consensus 114 GTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~g 193 (489)
||+++|++++... ...+|||+||+||+|||||+||++. ++.++++.+.+++.+++|+++++
T Consensus 68 GTl~~v~~~l~~~--~~~~~lgiiP~Gt~N~~a~~l~i~~--------~~~~~~~~l~~~~~~~~Dlg~v~--------- 128 (293)
T TIGR00147 68 GTINEVVNALIQL--DDIPALGILPLGTANDFARSLGIPE--------DLDKAAKLVIAGDARAIDMGQVN--------- 128 (293)
T ss_pred ChHHHHHHHHhcC--CCCCcEEEEcCcCHHHHHHHcCCCC--------CHHHHHHHHHcCCceEEEEEEEC---------
Confidence 9999999999642 3457999999999999999999984 36667888999999999998862
Q ss_pred CCCCCCCCCCCccccccccccccccccccCCcceece-EEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHh
Q 011293 194 SCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGG-FWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLG 272 (489)
Q Consensus 194 ~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~-F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g 272 (489)
.+| |+|++|+|+||++++.++... +.+ .++++|++.+
T Consensus 129 ----------------------------------~~~~fln~~g~G~~a~v~~~~~~~~-------k~~-~g~~~Y~~~~ 166 (293)
T TIGR00147 129 ----------------------------------KQYCFINMAGGGFGTEITTETPEKL-------KAA-LGSLSYILSG 166 (293)
T ss_pred ----------------------------------CeEEEEEEEeechhhHhHhhCCHHH-------Hhc-cchHHHHHHH
Confidence 258 999999999999998775332 223 4689999999
Q ss_pred hhcccccccccCCCCcCccceEEEEEEecCCeEEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCC
Q 011293 273 CTQGWFFASLVHPSSHNIAQLAKVKVMKKCGQWRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDD 352 (489)
Q Consensus 273 ~~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg~~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dD 352 (489)
+++ +. .++++ .+++++ ||+. ++. ...+++++|+++||||+.+ .|.++++|
T Consensus 167 l~~------l~--~~~~~--~~~i~~---d~~~--~~~--~~~~~~v~n~~~~gg~~~~-------------~p~a~~~D 216 (293)
T TIGR00147 167 LMR------MD--TLQPF--RCEIRG---EGEH--WQG--EAVVFLVGNGRQAGGGQKL-------------APDASIND 216 (293)
T ss_pred HHH------Hh--hCCCe--eEEEEE---CCeE--EEe--eEEEEEEeCCcccCCCccc-------------CCccccCC
Confidence 887 43 23332 234444 6652 333 3346788899999999988 78889999
Q ss_pred CcEEEEEecchh--HHHHHH--ccCC-----CceeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEEEEe
Q 011293 353 GLLEVVGFRDAW--HGLVLY--APSG-----HGTRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVEISH 423 (489)
Q Consensus 353 G~LeVv~~~~~~--~~~~l~--~~~g-----~~~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~ 423 (489)
|+|+|+++++.. .++.++ +..| ..++..++++++|+.++ ++++|+|||++... |+.|+|.+
T Consensus 217 G~l~v~~v~~~~~~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~i~~~~----~~~~~iDGE~~~~~------p~~i~v~p 286 (293)
T TIGR00147 217 GLLDLRIFTNDNLLPALVLTLMSDEGKHTDNPNIIYGKASRIDIQTPH----KITFNLDGEPLGGT------PFHIEILP 286 (293)
T ss_pred CeeEEEEEcCCCHHHHHHHHHHHhcCCCCCCCcEEEEEccEEEEEcCC----CcEEEeCCCcCCCC------cEEEEEEh
Confidence 999999998763 222221 2233 34788899999999875 78999999999864 79999996
Q ss_pred CCeeeEE
Q 011293 424 HGQVNIL 430 (489)
Q Consensus 424 ~~~v~~L 430 (489)
++++++
T Consensus 287 -~al~~~ 292 (293)
T TIGR00147 287 -AHLRCR 292 (293)
T ss_pred -hccEEe
Confidence 588886
No 13
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=100.00 E-value=5.8e-40 Score=332.48 Aligned_cols=286 Identities=24% Similarity=0.303 Sum_probs=221.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCc
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGD 113 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGD 113 (489)
++++.+|+||.||.+++.+.++.+++.|..... +.... +.++++.+ +++.+.+ .+.+.||++|||
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~-~a~~a~~------------~~~D~via~GGD 68 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIE-IAREAAV------------EGYDTVIAAGGD 68 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHH-HHHHHHh------------cCCCEEEEecCc
Confidence 578999999999999999999999999987654 33322 33467665 5554321 246799999999
Q ss_pred hHHHHHHHHHhhccCCCCCc-EEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCC
Q 011293 114 GTAGWLLGVVCDLKLSHPPP-IATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKE 192 (489)
Q Consensus 114 GTv~~vl~~l~~~~~~~~~p-lgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~ 192 (489)
||||+|+|+|.. ...+ ||+||+||+|||||+||||.+ .+..+++.+.+++++.+|++++.
T Consensus 69 GTv~evingl~~----~~~~~LgilP~GT~NdfAr~Lgip~~-------~~~~Al~~i~~g~~~~vDlg~~~-------- 129 (301)
T COG1597 69 GTVNEVANGLAG----TDDPPLGILPGGTANDFARALGIPLD-------DIEAALELIKSGETRKVDLGQVN-------- 129 (301)
T ss_pred chHHHHHHHHhc----CCCCceEEecCCchHHHHHHcCCCch-------hHHHHHHHHHcCCeEEEeehhcC--------
Confidence 999999999985 3333 999999999999999999951 48888999999999999997531
Q ss_pred CCCCCCCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHh
Q 011293 193 GSCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLG 272 (489)
Q Consensus 193 g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g 272 (489)
+ ++||+|.+|+|++|+|++.++..|++ ..++++|++.+
T Consensus 130 ------------------------------~----~~~fin~a~~G~~a~~~~~~~~~~k~--------~~g~~~y~~~~ 167 (301)
T COG1597 130 ------------------------------G----RRYFINNAGIGFDAEVVAAVEEERKK--------GFGRLAYALAG 167 (301)
T ss_pred ------------------------------C----cceEEEEeecchhHHHHHhhcHHHHh--------ccchHHHHHHH
Confidence 1 23999999999999999999977752 34689999999
Q ss_pred hhcccccccccCCCCcCccceEEEEEEecCCeEEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCC
Q 011293 273 CTQGWFFASLVHPSSHNIAQLAKVKVMKKCGQWRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDD 352 (489)
Q Consensus 273 ~~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg~~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dD 352 (489)
+.. +. ..+++ .+++++ +++..+ . ....+++.|.+++|||..+ +|++.++|
T Consensus 168 ~~~------l~--~~~~~--~~~i~~---d~~~~~--~--~~~~~~~~~~~~~gg~~~~-------------~p~a~~~d 217 (301)
T COG1597 168 LAV------LA--RLKPF--RIEIEY---DGKTFE--G--EALALLVFNGNSYGGGMKL-------------APDASLDD 217 (301)
T ss_pred HHh------cc--ccCCC--cEEEEE---cCcEEE--E--EEEEEEEecCccccccccc-------------CCcCCCCC
Confidence 986 32 23333 345555 454222 1 3456888898999999988 89999999
Q ss_pred CcEEEEEecchh--HHHHHH--ccCC-----CceeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEEEEe
Q 011293 353 GLLEVVGFRDAW--HGLVLY--APSG-----HGTRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVEISH 423 (489)
Q Consensus 353 G~LeVv~~~~~~--~~~~l~--~~~g-----~~~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~ 423 (489)
|+|+++++++.. .++.++ +.+| ..+...+++.++|+.+. ++.+++|||+.+.. |+.|++.+
T Consensus 218 G~l~~~i~~~~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~~~~i~~~~----~~~~~~DGE~~~~~------p~~i~~~p 287 (301)
T COG1597 218 GLLDVYILKPQSLLELLALLPDLLRGKHLENPDVEYLRAKKLEITSDP----PIPVNLDGEYLGKT------PVTIEVLP 287 (301)
T ss_pred ceEEEEEEccccHHHHHHHHHHHhCCCccCCCCeEEEeccEEEEEcCC----CceEeeCCccCCCC------cEEEEEec
Confidence 999999999863 222221 3333 23778899999988875 89999999999874 79999996
Q ss_pred CCeeeEEecCCCC
Q 011293 424 HGQVNILATRDCQ 436 (489)
Q Consensus 424 ~~~v~~L~~~~~~ 436 (489)
++++||++..+.
T Consensus 288 -~al~vl~p~~~~ 299 (301)
T COG1597 288 -GALRVLVPPDRP 299 (301)
T ss_pred -ccEEEEcCCCCC
Confidence 699999987664
No 14
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=100.00 E-value=1.8e-37 Score=332.15 Aligned_cols=312 Identities=15% Similarity=0.195 Sum_probs=217.3
Q ss_pred cceeecCCCCCc-----------ccCCCCCCcEEEEEcCCCCCCChhhHHH-HHHHHhccCCe-EEEEc-cCchhHHHHH
Q 011293 18 PSYVLLPDSESE-----------TVPDVPRCPVLVFINSKSGGQLGGDLLV-TYRSLLNKNQV-FDVGE-EAPDKALRRI 83 (489)
Q Consensus 18 ~~~~~~~~~~~~-----------~~~~~~~~~vlvivNP~SG~~~g~~~l~-~~~~~L~~~~V-~dl~~-~~p~~~l~~l 83 (489)
-+|.|...++.. ..+....++++||+||.||++++.+.+. .++.+|....+ +++.. +.++++.+ +
T Consensus 82 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~-l 160 (481)
T PLN02958 82 KDFVFEPLSDESRRLWCQKLRDYLDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKE-V 160 (481)
T ss_pred eeEEEeCCCHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHH-H
Confidence 377776666421 3333456789999999999999988765 68888887766 66544 56788765 5
Q ss_pred HHHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhcc---CCCCCcEEEeeCCCCCchhhhc----cCCCCCC
Q 011293 84 YLNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLK---LSHPPPIATVPLGTGNNLPFAF----GWGKKNP 156 (489)
Q Consensus 84 ~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~---~~~~~plgiIP~GTGNDfArsL----G~~~~~~ 156 (489)
++.+. ..+.+.|||+|||||||+|+|+|.... ...++|||+||+||||||||+| |++.
T Consensus 161 a~~~~------------~~~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~--- 225 (481)
T PLN02958 161 VRTMD------------LSKYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPC--- 225 (481)
T ss_pred HHHhh------------hcCCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCc---
Confidence 54432 124578999999999999999996421 0236899999999999999999 8874
Q ss_pred CCChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCCCCCCCCCCCCCCccccccccccccccccccCCcceeceEEEEee
Q 011293 157 GTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKEGSCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFS 236 (489)
Q Consensus 157 ~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fs 236 (489)
++.+++..|..++.+.+|++++.- +. + ..+|+|.+|
T Consensus 226 -----~~~~A~~~I~~g~~~~vDlg~v~~------------------------------------~~--~-~~f~vn~~g 261 (481)
T PLN02958 226 -----SATNAVLAIIRGHKCSLDVATILQ------------------------------------GE--T-KFFSVLMLA 261 (481)
T ss_pred -----CHHHHHHHHHcCCceEEeEEEEEc------------------------------------CC--c-eEEEEEeee
Confidence 366677789999999999998741 00 0 124589999
Q ss_pred ccchHHHhhHHHhhhccCchhhhccccchhhHHHHhhhcccccccccCCCCcCccceEEEEEE---------------ec
Q 011293 237 MGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLGCTQGWFFASLVHPSSHNIAQLAKVKVM---------------KK 301 (489)
Q Consensus 237 iG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g~~~~~~~~~l~~~~~k~~~~~~~i~v~---------------~~ 301 (489)
+||||+|....+ + .|+.++++|.+.+++. +++ .+.+ ..++.+. ..
T Consensus 262 ~GfdAdV~~~se--~--------kr~lG~lrY~~~~l~~------l~~--~r~y--~~~I~~~~a~~~~~~~~~~~~~~~ 321 (481)
T PLN02958 262 WGLVADIDIESE--K--------YRWMGSARLDFYGLQR------ILC--LRQY--NGRISFVPAPGFEAYGEPTSYNGE 321 (481)
T ss_pred eehhhhhhcccc--c--------ccccchHHHHHHHHHH------HHh--cCCc--ceEEEEEecccccccccccccccc
Confidence 999999965422 1 2345799999999987 331 2222 1222210 00
Q ss_pred -C----------------------CeEEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCCCcEEEE
Q 011293 302 -C----------------------GQWRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDDGLLEVV 358 (489)
Q Consensus 302 -d----------------------g~~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dDG~LeVv 358 (489)
+ .+|+.++ ..+.++.++|++|+|||+.+ +|.+.++||+|+|+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--~~fl~v~v~N~~~~Ggg~~i-------------aP~A~l~DG~LDlv 386 (481)
T PLN02958 322 STSKEESGKDKQHGYQGPDVKLENLDWRTIK--GPFVSVWLHNVPWGGEDTLA-------------APDAKFSDGYLDLI 386 (481)
T ss_pred ccccccccccccccccCCccccCCccceEee--cceeEEeeccCcccCCCccc-------------CCcccCCCCeEEEE
Confidence 0 0122111 12334559999999999988 89999999999999
Q ss_pred EecchhH--HHHHH--ccCCC-----ceeEEEeeEEEEEEecCC---CCccccccCCcccCCCCCCCCCcEEEEEEeCCe
Q 011293 359 GFRDAWH--GLVLY--APSGH-----GTRLAQAHRICFEFHKGG---ADHTFMRIDGEPWKQPLPVDDDTVVVEISHHGQ 426 (489)
Q Consensus 359 ~~~~~~~--~~~l~--~~~g~-----~~~l~q~~~i~I~~~~~~---~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~~~~ 426 (489)
++++... ++.++ +..|. .+.+.++++++|+..... .++.++++|||..... |++|++.+ ++
T Consensus 387 iv~~~s~~~lL~~l~~~~~G~h~~~~~V~~~k~k~~~I~~~~~~~~~~~~~~i~iDGE~~~~~------p~~i~v~~-~a 459 (481)
T PLN02958 387 LIKDCPKLALLALMTKLSDGTHVKSPYVMYLKVKAFVLEPGPRTDDPTKGGIIDSDGEVLARG------NGSYKCDQ-KA 459 (481)
T ss_pred EEcCCCHHHHHHHHHHHhCCCccCCCceEEEEEEEEEEEECCcccCcCcCCeEEECCcccCCC------Cceeeecc-cc
Confidence 9998743 22222 33343 377889999999874210 1356899999998763 79999996 58
Q ss_pred eeEEe
Q 011293 427 VNILA 431 (489)
Q Consensus 427 v~~L~ 431 (489)
+.++.
T Consensus 460 l~~~~ 464 (481)
T PLN02958 460 LMSYD 464 (481)
T ss_pred ccccC
Confidence 88775
No 15
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-37 Score=335.47 Aligned_cols=285 Identities=20% Similarity=0.238 Sum_probs=208.2
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCc
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGD 113 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGD 113 (489)
+++++||+||+||++++.+.++.+++.|.+. + +++.. +.++++.+ +++++. .++.+.|||+|||
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~-~~~~v~~t~~~~~a~~-la~~~~------------~~~~d~Viv~GGD 307 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAY-FDLTVKLTTPEISAEA-LAKQAR------------KAGADIVIACGGD 307 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcC-CceEEEECCCCccHHH-HHHHHH------------hcCCCEEEEECCC
Confidence 5789999999999999999999999999864 3 44433 34455543 544321 0245789999999
Q ss_pred hHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhc-cCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCC
Q 011293 114 GTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAF-GWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKE 192 (489)
Q Consensus 114 GTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsL-G~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~ 192 (489)
||||+|++++.. +++|||+||+||||||||+| |++.. . .++.++++.|.+++.+.+|++.++
T Consensus 308 GTl~ev~~~l~~----~~~~lgiiP~GTgNdfAr~L~gi~~~--~---~~~~~a~~~i~~g~~~~iD~g~vn-------- 370 (547)
T PRK12361 308 GTVTEVASELVN----TDITLGIIPLGTANALSHALFGLGSK--L---IPVEQACDNIIQGHTQRIDTARCN-------- 370 (547)
T ss_pred cHHHHHHHHHhc----CCCCEEEecCCchhHHHHHhcCCCCC--C---ccHHHHHHHHHhCCCeEEEEEEEc--------
Confidence 999999999973 57999999999999999999 99831 1 246677888999999999998762
Q ss_pred CCCCCCCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHh
Q 011293 193 GSCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLG 272 (489)
Q Consensus 193 g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g 272 (489)
+++|+|++|+|+||+|++.+++.++ +..++++|+..+
T Consensus 371 -----------------------------------~~~fln~agiG~da~v~~~~~~~~k--------~~~G~laY~~~~ 407 (547)
T PRK12361 371 -----------------------------------DRLMLLLVGIGFEQKMIESADRERK--------NALGQLAYLDGL 407 (547)
T ss_pred -----------------------------------CeEEEEEEeechhHHHHHhccHHHH--------hccCHHHHHHHH
Confidence 2589999999999999988775443 244689999998
Q ss_pred hhcccccccccCCCCcCccceEEEEEEecCCe-EEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcC
Q 011293 273 CTQGWFFASLVHPSSHNIAQLAKVKVMKKCGQ-WRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVD 351 (489)
Q Consensus 273 ~~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg~-~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~d 351 (489)
++. +.+ ++.+ .+++++ ||+ ... . +..+++|+|+++|++.... | .+.++++
T Consensus 408 ~~~------l~~--~~~~--~l~i~~---dg~~~~~--~--~~~~l~v~N~~~~~~~~~~-G-----------gg~~~~~ 458 (547)
T PRK12361 408 WRA------VNE--NETL--TLTVTL---DDAEPQT--I--STHSLVVANAAPFTSLLAQ-G-----------GGEPNMT 458 (547)
T ss_pred HHH------hhc--CCCe--eEEEEE---CCCCceE--E--EEEEEEEEcCCCccccccc-C-----------CCCCCCC
Confidence 887 542 2332 345555 554 222 1 4457889998765321100 0 1124689
Q ss_pred CCcEEEEEecchh----HHHHH---H-cc-----CCCceeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEE
Q 011293 352 DGLLEVVGFRDAW----HGLVL---Y-AP-----SGHGTRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVV 418 (489)
Q Consensus 352 DG~LeVv~~~~~~----~~~~l---~-~~-----~g~~~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ 418 (489)
||+|||+++++.. +++.+ + .. ...++++.++++++|+..+ ++++|+|||+.... |++
T Consensus 459 DG~Ldv~~v~~~~~~~~~l~~l~~~~~~g~~~~~~~~~v~~~~~k~v~I~~~~----~~~~~iDGE~~~~~------p~~ 528 (547)
T PRK12361 459 DGLLDITWLDSGGEPGEQLLSLAELALSGLGKEPEANKVHHAHAKKVTISSQK----PIKYVIDGELFEDE------DLT 528 (547)
T ss_pred CceeEEEEEcCCCcchHHHHHHHHHHHHHhcccCCCCceEEEEeeEEEEEeCC----ceEEEECCccCCce------EEE
Confidence 9999999998742 22221 1 11 1245788899999999865 79999999999763 799
Q ss_pred EEEEeCCeeeEEecCC
Q 011293 419 VEISHHGQVNILATRD 434 (489)
Q Consensus 419 ieI~~~~~v~~L~~~~ 434 (489)
|+|.+ +++++++++.
T Consensus 529 i~v~p-~al~vlvp~~ 543 (547)
T PRK12361 529 IEVQP-ASLKVFVPYQ 543 (547)
T ss_pred EEEec-CceEEEecCc
Confidence 99996 6999999643
No 16
>PLN02204 diacylglycerol kinase
Probab=100.00 E-value=2.5e-32 Score=293.06 Aligned_cols=318 Identities=16% Similarity=0.165 Sum_probs=210.6
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEc
Q 011293 34 VPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAG 111 (489)
Q Consensus 34 ~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~G 111 (489)
...++++||+||.||++++.+.|..+..+|....+ +++.. +.++++.+ +++.++++ .....+.||++|
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d-~~~~~~~~---------~l~~~D~VVaVG 226 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFD-VMASISNK---------ELKSYDGVIAVG 226 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHH-HHHHHhhh---------hccCCCEEEEEc
Confidence 44578999999999999999999999999987766 55443 56788765 44433210 013457899999
Q ss_pred CchHHHHHHHHHhhcc----------------------------------------------------------------
Q 011293 112 GDGTAGWLLGVVCDLK---------------------------------------------------------------- 127 (489)
Q Consensus 112 GDGTv~~vl~~l~~~~---------------------------------------------------------------- 127 (489)
||||+|||+|+|....
T Consensus 227 GDGt~nEVlNGL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (601)
T PLN02204 227 GDGFFNEILNGYLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQ 306 (601)
T ss_pred CccHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999996210
Q ss_pred ------CCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCCCCCCCCCCC
Q 011293 128 ------LSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKEGSCDPIAPL 201 (489)
Q Consensus 128 ------~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~g~~~~~~~~ 201 (489)
...+++|||||+|||||||++++.+. ++...+..|..|+.+.+|+++|.-.... .
T Consensus 307 ~~~~~~~~~~~~lGIIPaGSgN~~a~~~~g~~--------dp~taa~~Ii~G~~~~lDig~V~~~~~~----~------- 367 (601)
T PLN02204 307 DSDFPFPNERFRFGIIPAGSTDAIVMCTTGER--------DPVTSALHIILGRRVCLDIAQVVRWKTT----S------- 367 (601)
T ss_pred cccccccCCCceEEEECCccHHHHHHHccCCC--------CHHHHHHHHHhCCCeEeeEEEEeccccc----c-------
Confidence 01357899999999999999987764 3566677899999999999998521100 0
Q ss_pred CCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHhhhccccccc
Q 011293 202 ELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLGCTQGWFFAS 281 (489)
Q Consensus 202 ~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g~~~~~~~~~ 281 (489)
.+ ....+.+||+|.+|+||+|+|+...++ .|+.|+++|.+.+++.
T Consensus 368 -----------------~~--~~~~~~ryf~s~ag~Gf~gdVi~esek----------~R~mG~~rY~~~g~k~------ 412 (601)
T PLN02204 368 -----------------TS--EIEPYVRYAASFAGYGFYGDVISESEK----------YRWMGPKRYDYAGTKV------ 412 (601)
T ss_pred -----------------cc--cccccceEEEEEeecchHHHHHHHhhh----------hcccchHHHHHHHHHH------
Confidence 00 001124799999999999999877442 3456799999999998
Q ss_pred ccCCCCcCccceEEEEEEecCCeEEEE-e---------ccCc---e---eEEEEEcCCC---------------------
Q 011293 282 LVHPSSHNIAQLAKVKVMKKCGQWRDL-E---------IPSS---I---RSIVCLNLPS--------------------- 324 (489)
Q Consensus 282 l~~~~~k~~~~~~~i~v~~~dg~~~~l-~---------~~~~---~---~~i~v~N~~s--------------------- 324 (489)
++. .+.+ .+++.+ ++..... . .++. + ..+.|+|.++
T Consensus 413 ~~~--~r~y--~~~V~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~c~Vcn~~~~~~~~~~~p~~~~~~~~W~~~ 485 (601)
T PLN02204 413 FLK--HRSY--EAEVAY---LETESEKSKASSEARKRTGPKKSEKIVCRTNCSVCNTKVSTNSPSTTPNSCPEETRWLRS 485 (601)
T ss_pred HHh--CCCc--eEEEEE---CCeEeeecccccccccccccccccchhhhhheeeecccccccccccccccccccccceee
Confidence 432 2332 345555 4431111 0 0000 0 1367777551
Q ss_pred CCCCcCCCC----CCCCCCCCCCCCCCCCcCCCcEEEEEecchhH--HHHH---HccC-CC-----ceeEEEeeEEEEEE
Q 011293 325 FSGGLNPWG----TPNTKKSQYKDFTPPYVDDGLLEVVGFRDAWH--GLVL---YAPS-GH-----GTRLAQAHRICFEF 389 (489)
Q Consensus 325 ~gGG~~~w~----~~~~~~~~~~~~p~a~~dDG~LeVv~~~~~~~--~~~l---~~~~-g~-----~~~l~q~~~i~I~~ 389 (489)
+|+.+..++ ..+.+ ..+--.|.+.++||.|+|+++++..+ ++.+ ++.. |. .+++.+++.++|+.
T Consensus 486 ~G~f~~vG~~iis~~~~r-ap~gl~pdA~l~DG~LDLilVr~~s~~~~L~~L~~l~~~gG~~l~~~~Ve~~ktk~f~~~s 564 (601)
T PLN02204 486 KGRFLSVGAAIISNRNER-APDGLVADAHLSDGFLHLILIKDCPHPLYLWHLTQLAKRGGEPLNFEFVEHHKTPAFTFTS 564 (601)
T ss_pred cCceEEeeeecccccccc-cccccCCCCcCCCCeEEEEEECCCCHHHHHHHHHHHHhhcCccCCCCcEEEEEeeEEEEEE
Confidence 222211111 00000 00112578999999999999998853 2221 1222 22 36788999999887
Q ss_pred ecCCCCccccccCCcccCCCCCCCCCcEEEEEEeCCeeeEEecC
Q 011293 390 HKGGADHTFMRIDGEPWKQPLPVDDDTVVVEISHHGQVNILATR 433 (489)
Q Consensus 390 ~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~~~~v~~L~~~ 433 (489)
.. .+..+++|||.+... |+.|+|.+ +.++++++-
T Consensus 565 ~~---~~~~~niDGE~~~~~------~v~v~V~~-~al~lfa~g 598 (601)
T PLN02204 565 FG---DESVWNLDGEIFQAH------QLSAQVFR-GLVNLFASG 598 (601)
T ss_pred CC---CCceEEeCCCcCCCc------cEEEEEEc-CeeEEEecC
Confidence 53 256699999998764 79999996 699999853
No 17
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=100.00 E-value=5.3e-34 Score=264.16 Aligned_cols=160 Identities=39% Similarity=0.679 Sum_probs=138.6
Q ss_pred EEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHhhhcccccccccCCCCcCccceEEEEEEecCCeEEEEec
Q 011293 231 FWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLGCTQGWFFASLVHPSSHNIAQLAKVKVMKKCGQWRDLEI 310 (489)
Q Consensus 231 F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g~~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg~~~~l~~ 310 (489)
|+||||||+||+|+++||+.|+++|++|++|+.||++|+..|+++. +.+.++++.+.+++.+ ||+ .+.+
T Consensus 2 ~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~------~~~~~~~~~~~i~l~~---dg~--~~~l 70 (161)
T PF00609_consen 2 MNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKAL------FQRSCKNLPKKIELEV---DGK--EVDL 70 (161)
T ss_pred eEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHH------HhchhcCchhhccccc---CCe--eEee
Confidence 8999999999999999999999999999999999999999999993 3334566666666666 776 6678
Q ss_pred cCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCCCcEEEEEecchhHHHHHHccCCCceeEEEeeEEEEEEe
Q 011293 311 PSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDDGLLEVVGFRDAWHGLVLYAPSGHGTRLAQAHRICFEFH 390 (489)
Q Consensus 311 ~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dDG~LeVv~~~~~~~~~~l~~~~g~~~~l~q~~~i~I~~~ 390 (489)
|.++.+|+++|+|||+||.++|+..+..... ..+..++++||+|||+++++++|+...+...++++|++|++.|+|+++
T Consensus 71 p~~~~~iv~lNIpSy~gG~~~W~~~~~~~~~-~~~~~~~~~Dg~lEVvg~~~~~hl~~~~~g~~~~~rl~Q~~~i~i~~~ 149 (161)
T PF00609_consen 71 PSSLESIVFLNIPSYGGGVDLWGNSKPDRSK-LKFKKQSMDDGKLEVVGFRGSFHLGQIQAGLSSAKRLAQGRPIRIETK 149 (161)
T ss_pred ecceeEEEEEccccccCCcccccCCcccccc-cccccccccCceEEEEEEcCchhhhhhhhccCCceEeecCCEEEEEEC
Confidence 7788999999999999999999987654322 346789999999999999999998887777888899999999999998
Q ss_pred cCCCCccccccCCcc
Q 011293 391 KGGADHTFMRIDGEP 405 (489)
Q Consensus 391 ~~~~~~~~~qiDGE~ 405 (489)
++ +++||+||||
T Consensus 150 ~~---~~~~QvDGEp 161 (161)
T PF00609_consen 150 EN---KVPFQVDGEP 161 (161)
T ss_pred CC---ceeEEeCCCC
Confidence 51 7999999997
No 18
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.90 E-value=4.3e-22 Score=210.69 Aligned_cols=299 Identities=18% Similarity=0.208 Sum_probs=198.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHH-HHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcC
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVT-YRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGG 112 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~-~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GG 112 (489)
.++++||+||.+|.|++.+++.. ++.+|.+..+ |++.. ++|.||.+ +++.+. ..+.+-||++||
T Consensus 179 ~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HAre-i~rt~d------------l~kyDgIv~vsG 245 (579)
T KOG1116|consen 179 PRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHARE-IVRTLD------------LGKYDGIVCVSG 245 (579)
T ss_pred CccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHH-HHHhhh------------ccccceEEEecC
Confidence 46799999999999999888665 6667777777 77655 78999886 777542 235688999999
Q ss_pred chHHHHHHHHHhhc---cCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccC
Q 011293 113 DGTAGWLLGVVCDL---KLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRA 189 (489)
Q Consensus 113 DGTv~~vl~~l~~~---~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~ 189 (489)
||+++||+|+|..- ......|||+||+||||.||.+++|..+. + - +..+.-.+.+++...+|+..+..-.
T Consensus 246 DGl~hEVlNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~--~--~-~~~a~l~iirg~~t~~dv~~v~~~~-- 318 (579)
T KOG1116|consen 246 DGLLHEVLNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGP--D--L-PLLATLLIIRGRLTPMDVSVVEYAG-- 318 (579)
T ss_pred CcCHHHhhhccccccchhhHhcCceeEeecCCccHHHHHhhcccCc--c--c-chHHHHHHHccCCCchheeehhhcc--
Confidence 99999999999642 12257999999999999999999998631 1 0 2223336678888889987764210
Q ss_pred CCCCCCCCCCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHH
Q 011293 190 PKEGSCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYA 269 (489)
Q Consensus 190 ~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~ 269 (489)
+...+..++.+-|+-|+|-...++.|+ .|..+|.
T Consensus 319 ------------------------------------~~~~fSfLs~~wGlIADiDI~SEk~R~----------mG~~Rf~ 352 (579)
T KOG1116|consen 319 ------------------------------------KDRHFSFLSAAWGLIADVDIESEKYRW----------MGPARFT 352 (579)
T ss_pred ------------------------------------CcceEEEEeeeeeeEEecccchHHHHh----------hcchhhh
Confidence 012478899999999999876665553 3456666
Q ss_pred HHhhhcccccccccCCCCcCccceEEEEE---------------------------------------------------
Q 011293 270 KLGCTQGWFFASLVHPSSHNIAQLAKVKV--------------------------------------------------- 298 (489)
Q Consensus 270 ~~g~~~~~~~~~l~~~~~k~~~~~~~i~v--------------------------------------------------- 298 (489)
+.++.. ..| + ++|+. .+.+-.
T Consensus 353 lg~~~r-l~~--l--r~Y~g---ri~ylp~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~~~~~~~s~ 424 (579)
T KOG1116|consen 353 LGAFLR-LIQ--L--RKYKG---RIEYLPAKGKSAEPLPAHELEAADSEGCLSTHADTEPSEYPRLSVPKMSPKSVLRSP 424 (579)
T ss_pred HHHHHH-HHh--c--cCCCc---eEEEecccccccCcccchhhccccccccccccccccccccccccccccCccccccCc
Confidence 665554 111 1 12211 010000
Q ss_pred --------------Ee------cCCeEEEEeccC-ceeE-EEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCCCcEE
Q 011293 299 --------------MK------KCGQWRDLEIPS-SIRS-IVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDDGLLE 356 (489)
Q Consensus 299 --------------~~------~dg~~~~l~~~~-~~~~-i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dDG~Le 356 (489)
+. ....|..+ ++ .+.. +++.+ .|.|+.+.+ +|.+.++||.++
T Consensus 425 ~~e~s~~~~~~~~~~~p~~~~p~psdw~~~--~~~d~~~~~a~~~-sy~~~d~~~-------------~P~A~~~dg~I~ 488 (579)
T KOG1116|consen 425 VSETSPVIPEDPLHLSPPLEEPLPSDWEVV--PGVDFVCILAILL-SYLGADMKF-------------APAARPDDGLIH 488 (579)
T ss_pred ccccCcccCCccccCCCcccCCCCcceeee--cCcceeeeehhhh-hhccCCccc-------------ccccccCCCeEE
Confidence 00 00123221 11 2221 22333 367777777 899999999999
Q ss_pred EEEecch--hH-HHHHHc--cCCCc-------eeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEEEEeC
Q 011293 357 VVGFRDA--WH-GLVLYA--PSGHG-------TRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVEISHH 424 (489)
Q Consensus 357 Vv~~~~~--~~-~~~l~~--~~g~~-------~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~~ 424 (489)
+++++.- +. ++.+++ -+|.| +.+..++.++++-.. ....+++|||.+... |..+++.+
T Consensus 489 lv~~~~~~~r~~ll~~llald~gsh~~~~~p~v~~~~vra~r~epv~---~~~~~~vDGE~~~~e------p~q~~v~p- 558 (579)
T KOG1116|consen 489 LVIVRAGGSRTQLLRLLLALDKGSHLHVECPFVKYVKVRAFRLEPVT---PSGYFAVDGELVPLE------PLQVQVLP- 558 (579)
T ss_pred EEEEccCCcHHHHHHHHHhhcccccccccCCceeEEEeEEEEEEEec---CCceEEecccEeecc------ceeEEecc-
Confidence 9998765 22 333332 23333 344566667766654 248899999998864 79999996
Q ss_pred CeeeEEecCC
Q 011293 425 GQVNILATRD 434 (489)
Q Consensus 425 ~~v~~L~~~~ 434 (489)
+-+.+|....
T Consensus 559 ~~i~~~s~~~ 568 (579)
T KOG1116|consen 559 GLILTLSGRG 568 (579)
T ss_pred cceeEEeccC
Confidence 6999998754
No 19
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=99.88 E-value=9.2e-23 Score=188.71 Aligned_cols=159 Identities=35% Similarity=0.651 Sum_probs=119.8
Q ss_pred EEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHhhhcccccccccCCCCcCccceEEEEEEecCCeEEEEec
Q 011293 231 FWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLGCTQGWFFASLVHPSSHNIAQLAKVKVMKKCGQWRDLEI 310 (489)
Q Consensus 231 F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g~~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg~~~~l~~ 310 (489)
|+|++|+||||+|++.++..|+++|.++.+++.|+++|++.++++ ++...++.+...+++.+ ||+ ..+.
T Consensus 2 ~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~------l~~~~~~~~~~~~~i~~---dg~--~~~~ 70 (160)
T smart00045 2 MNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKD------LFFRTCKDLHERIELEC---DGV--DVDL 70 (160)
T ss_pred ccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHH------hhhccccchhhceEEEE---CCE--eccC
Confidence 899999999999999999999888877777788999999999998 32111222222355665 776 3344
Q ss_pred cCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCCCcEEEEEecchhHHHHHHccCCCceeEEEeeEEEEEEe
Q 011293 311 PSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDDGLLEVVGFRDAWHGLVLYAPSGHGTRLAQAHRICFEFH 390 (489)
Q Consensus 311 ~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dDG~LeVv~~~~~~~~~~l~~~~g~~~~l~q~~~i~I~~~ 390 (489)
+.++.+++++|++|||||+.+|+... ..+++.|+++++||+|||+++++.++...++....+.+++.|+++++|+++
T Consensus 71 ~~~~~~v~v~N~~~~ggG~~i~p~~~---~~~~~~p~a~~~DG~ldv~~~~~~~~~~~~~~~~~~~v~~~~~~~v~i~i~ 147 (160)
T smart00045 71 PNSLEGIAVLNIPSYGGGTNLWGTTD---KEDLNFSKQSHDDGLLEVVGLTGAMHMAQIRQVGLAGRRIAQCSEVRITIK 147 (160)
T ss_pred CCCccEEEEECCCccccCcccccCCc---ccccccCCCCCCCceEEEEEEcCchhhhhhhhccCCCceeecCceEEEEEe
Confidence 33567899999999999999997642 234567999999999999999998654333323345688899999885543
Q ss_pred cCCCCccccccCCcc
Q 011293 391 KGGADHTFMRIDGEP 405 (489)
Q Consensus 391 ~~~~~~~~~qiDGE~ 405 (489)
. ++++++|+|||+
T Consensus 148 ~--~~~~~~q~DGE~ 160 (160)
T smart00045 148 T--SKTIPMQVDGEP 160 (160)
T ss_pred c--CCceeeecCCCC
Confidence 3 248999999995
No 20
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.87 E-value=1.4e-21 Score=174.44 Aligned_cols=123 Identities=27% Similarity=0.380 Sum_probs=80.4
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCC-cEEEEEcCch
Q 011293 38 PVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQER-LRIIVAGGDG 114 (489)
Q Consensus 38 ~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~-~~IIv~GGDG 114 (489)
+++||+||+||++++. ++.+++.|..... +.+.. +..+++.+ +.+ ..+ .... +.||++||||
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~~~~~~~~t~~~~~~~~-~~~-~~~-----------~~~~~~~ivv~GGDG 65 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAGIDYEVIETESAGHAEA-LAR-ILA-----------LDDYPDVIVVVGGDG 65 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTTCEEEEEEESSTTHHHH-HHH-HHH-----------HTTS-SEEEEEESHH
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcCCceEEEEEeccchHHH-HHH-HHh-----------hccCccEEEEEcCcc
Confidence 5899999999999988 4777776665433 34333 23333322 332 111 1233 7999999999
Q ss_pred HHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHH-HHHHHHcCceeeEeEEEE
Q 011293 115 TAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQ-FLRHVMNAKEMKIDNWHI 183 (489)
Q Consensus 115 Tv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~-~l~~i~~a~~~~iD~w~i 183 (489)
|||++++++........+|||+||+||||||||+|||+.. ... ....+..+...++|++++
T Consensus 66 Tl~~vv~~l~~~~~~~~~~l~iiP~GT~N~~ar~lg~~~~--------~~~~a~~~~~~~~~~~~d~~~v 127 (130)
T PF00781_consen 66 TLNEVVNGLMGSDREDKPPLGIIPAGTGNDFARSLGIPSD--------PEANAALLIILGRVRKIDVGKV 127 (130)
T ss_dssp HHHHHHHHHCTSTSSS--EEEEEE-SSS-HHHHHTT--SS--------HHH-HHHHHHHSEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCccceEEEecCCChhHHHHHcCCCCC--------cHHHHHHHHHhCCCcEeEEEEe
Confidence 9999999998643333679999999999999999999962 222 333445556668999876
No 21
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.85 E-value=4e-21 Score=170.53 Aligned_cols=100 Identities=47% Similarity=0.863 Sum_probs=76.9
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHhccCCeEEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHH
Q 011293 40 LVFINSKSGGQLGGDLLVTYRSLLNKNQVFDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTAGWL 119 (489)
Q Consensus 40 lvivNP~SG~~~g~~~l~~~~~~L~~~~V~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~v 119 (489)
+||+||+||++++.+++..+++.+...+++.+......++.+ +.+. ....+.||++|||||+|+|
T Consensus 1 lvi~NP~sG~~~~~~~~~~~~~~l~~~~v~~t~~~~~~~~~~-~~~~--------------~~~~d~vvv~GGDGTi~~v 65 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLRKFRLLLNPAQVFDLTKKGPAAALV-IFRD--------------LPKFDRVLVCGGDGTVGWV 65 (124)
T ss_pred CEEEcCCCCCCccHHHHHHHHHHcCCceEEEEecCChHHHHH-HHhh--------------cCcCCEEEEEccccHHHHH
Confidence 589999999999999999999999887776655433444333 2221 1234589999999999999
Q ss_pred HHHHhhccCC-CCCcEEEeeCCCCCchhhhccCCCC
Q 011293 120 LGVVCDLKLS-HPPPIATVPLGTGNNLPFAFGWGKK 154 (489)
Q Consensus 120 l~~l~~~~~~-~~~plgiIP~GTGNDfArsLG~~~~ 154 (489)
+|++...... ..+|||+||+||||||||+|||+..
T Consensus 66 vn~l~~~~~~~~~~plgiiP~GTgNdfar~lgi~~~ 101 (124)
T smart00046 66 LNALDKRELPLPEPPVAVLPLGTGNDLARSLGWGGG 101 (124)
T ss_pred HHHHHhcccccCCCcEEEeCCCChhHHHHHcCCCCC
Confidence 9999753211 1189999999999999999999964
No 22
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.64 E-value=4e-15 Score=151.02 Aligned_cols=303 Identities=16% Similarity=0.165 Sum_probs=190.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCc
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGD 113 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGD 113 (489)
.+.++||+||.+|+|+|.++++.+..++--..| +++.. +.+.+|.+.++.. . ..+....+-||++|||
T Consensus 158 PknllvFinPfgGkG~g~ki~e~V~~~F~la~v~tkvivTErAnhA~d~~~ei-~---------~~~~~~yDGiv~VGGD 227 (516)
T KOG1115|consen 158 PKNLLVFINPFGGKGNGSKIWETVSKIFILAKVNTKVIVTERANHAFDVMAEI-Q---------NKELHTYDGIVAVGGD 227 (516)
T ss_pred CccEEEEEcCCCCCCcccchhhhhhhhEEeeecceeEEEEccccchhhhhhhC-C---------HhhhhhcccEEEecCc
Confidence 356999999999999999999998876544445 44332 5566666533321 1 1122344679999999
Q ss_pred hHHHHHHHHHhh-c------c--------CCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeE
Q 011293 114 GTAGWLLGVVCD-L------K--------LSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKI 178 (489)
Q Consensus 114 GTv~~vl~~l~~-~------~--------~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~i 178 (489)
|-.||+++++.- . . ....+-+||||+|+.|-.--+-.-.+ | .+-++| .|.-|+...+
T Consensus 228 G~FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~gt~----D---~~TSAl-HI~lG~~l~v 299 (516)
T KOG1115|consen 228 GFFNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTTGTR----D---PVTSAL-HIILGRKLFV 299 (516)
T ss_pred hhHHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEeccCC----c---ccccee-eeEeccceee
Confidence 999999988631 1 1 12467799999999998766553332 1 122233 5666888889
Q ss_pred eEEEEEeeccCCCCCCCCCCCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhh
Q 011293 179 DNWHILMRLRAPKEGSCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKF 258 (489)
Q Consensus 179 D~w~i~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~ 258 (489)
|+-++.-. + ..-||-.|.+|.||-++|....++.|
T Consensus 300 DVctVht~-----------------------------------~---kLiRysaSa~gYGFyGDvl~dSEKYR------- 334 (516)
T KOG1115|consen 300 DVCTVHTI-----------------------------------E---KLIRYSASAAGYGFYGDVLSDSEKYR------- 334 (516)
T ss_pred eeeeeeec-----------------------------------c---hheeeehhhhcccccchhhhhhhhhh-------
Confidence 98776300 0 11368889999999999998777655
Q ss_pred hccccchhhHHHHhhhcccccccccCCCCcCccceEEEEE-----------------EecCCeEEEEeccCceeEEEEEc
Q 011293 259 KNQLVNQSTYAKLGCTQGWFFASLVHPSSHNIAQLAKVKV-----------------MKKCGQWRDLEIPSSIRSIVCLN 321 (489)
Q Consensus 259 k~rl~nkl~Y~~~g~~~~~~~~~l~~~~~k~~~~~~~i~v-----------------~~~dg~~~~l~~~~~~~~i~v~N 321 (489)
+.+..+|-+.|+|+. +.|+.++.- +.+.- -.++.+|..+ ...+.-|.|+|
T Consensus 335 ---WmGp~RYDfsglKtf-----lkH~~Yege---VsFlpa~sen~~qe~~~~g~~~~~~~k~Wq~~--~g~Fl~V~c~a 401 (516)
T KOG1115|consen 335 ---WMGPKRYDFSGLKTF-----LKHRSYEGE---VSFLPAESENPCQEPCPSGASLHTRSKTWQRN--TGRFLKVLCRA 401 (516)
T ss_pred ---ccCchhhhhHHHHHH-----HhccccceE---EEecccccCCchhccccccCCcccCcchhhhh--hhheeeeeEee
Confidence 445678999999981 334433221 11110 0013344422 23566788999
Q ss_pred CCCCCCCcCCCCCCCCCCCCCCCCCCCCcCCCcEEEEEecchhHHHHH--H---ccC-C----CceeEEEeeEEEEEEec
Q 011293 322 LPSFSGGLNPWGTPNTKKSQYKDFTPPYVDDGLLEVVGFRDAWHGLVL--Y---APS-G----HGTRLAQAHRICFEFHK 391 (489)
Q Consensus 322 ~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dDG~LeVv~~~~~~~~~~l--~---~~~-g----~~~~l~q~~~i~I~~~~ 391 (489)
+|+.-.-..-|- +|...++||-++++..+..++...+ + ... + .-+....+.++......
T Consensus 402 ipciC~~~PrGL-----------aP~T~LndGs~dLil~R~~SRF~fi~fl~r~a~~~~qfdf~fVe~y~v~~v~~~s~~ 470 (516)
T KOG1115|consen 402 IPCICNSKPRGL-----------APSTTLNDGSEDLILCRTKSRFLFIGFLVRSARNERQFDFLFVEAYLVDGVLHLSLI 470 (516)
T ss_pred ccccccCCCCCc-----------CCccccCCCccceeeeecccchHHHHHHHHHhhcccccCceeeeeeeeeeEEEEeec
Confidence 888753222111 5778999999999999988643322 1 111 1 12344556665544432
Q ss_pred C---CCCccccccCCcccCCCCCCCCCcEEEEEEeCCeeeEEe
Q 011293 392 G---GADHTFMRIDGEPWKQPLPVDDDTVVVEISHHGQVNILA 431 (489)
Q Consensus 392 ~---~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~~~~v~~L~ 431 (489)
. -.++....+|||.+.+|. |+.|++.+. =++++.
T Consensus 471 ~d~~~~d~~eWN~DGeile~p~-----~lh~rlHpq-LIslfg 507 (516)
T KOG1115|consen 471 KDCSRPDYLEWNLDGEILEQPK-----PLHFRLHPQ-LISLFG 507 (516)
T ss_pred CCCCCCCcceeccCcchhcCCc-----ceEEEechh-hHhHhc
Confidence 1 134567899999999873 688888753 444443
No 23
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=98.85 E-value=2.6e-08 Score=101.86 Aligned_cols=133 Identities=19% Similarity=0.175 Sum_probs=83.4
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHHH-HHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEE
Q 011293 33 DVPRCPVLVFINSKSGGQLGGDLLVT-YRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIV 109 (489)
Q Consensus 33 ~~~~~~vlvivNP~SG~~~g~~~l~~-~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv 109 (489)
+...++++|++||.+..+.......+ ...+|+-.++ +++.. .+.+++.. ++..++ ...+.|+|
T Consensus 57 ~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~-l~e~~~-------------t~~Dii~V 122 (535)
T KOG4435|consen 57 ETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKA-LAEAVD-------------TQEDIIYV 122 (535)
T ss_pred ccccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHH-HHHHhc-------------cCCCeEEE
Confidence 45568999999999987655544433 3445554444 44433 44455432 333332 12489999
Q ss_pred EcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCce---eeEeE
Q 011293 110 AGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKE---MKIDN 180 (489)
Q Consensus 110 ~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~---~~iD~ 180 (489)
+|||||+++|+.++.+-. ....|++++|.|--|--..+.-..-.-..++-+.+.+....+.+++. ..+|+
T Consensus 123 aGGDGT~~eVVTGi~Rrr-~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~ksv~~fdv 195 (535)
T KOG4435|consen 123 AGGDGTIGEVVTGIFRRR-KAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKKSVYAFDV 195 (535)
T ss_pred ecCCCcHHHhhHHHHhcc-cccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhcccccceEEEEe
Confidence 999999999999987532 46789999999988765554433221123444555566666766665 55565
No 24
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.19 E-value=9.3e-06 Score=81.90 Aligned_cols=112 Identities=15% Similarity=0.079 Sum_probs=73.1
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHH-HHHHHhhhccchhhhhhcCCcEEEEEcCchH
Q 011293 38 PVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIY-LNLETLKANGDAYATQIQERLRIIVAGGDGT 115 (489)
Q Consensus 38 ~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~-~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGT 115 (489)
++.|++|+ |...+.++++++.+.|...++ +.+....... ..... ..+.. . ...+.+.||++|||||
T Consensus 2 ~v~iv~~~--~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~-~~~~~~~~~~~-------~--~~~~~d~vi~iGGDGT 69 (277)
T PRK03708 2 RFGIVARR--DKEEALKLAYRVYDFLKVSGYEVVVDSETYEH-LPEFSEEDVLP-------L--EEMDVDFIIAIGGDGT 69 (277)
T ss_pred EEEEEecC--CCHHHHHHHHHHHHHHHHCCCEEEEecchhhh-cCccccccccc-------c--cccCCCEEEEEeCcHH
Confidence 47788886 446778889999998876654 4443110000 00000 00000 0 0023578999999999
Q ss_pred HHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCcee
Q 011293 116 AGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEM 176 (489)
Q Consensus 116 v~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~ 176 (489)
+.++++ +.. ..+||..||+||. +|...+... .+.++++++.++...
T Consensus 70 lL~a~~-~~~----~~~pi~gIn~G~l-GFl~~~~~~---------~~~~~l~~i~~g~~~ 115 (277)
T PRK03708 70 ILRIEH-KTK----KDIPILGINMGTL-GFLTEVEPE---------ETFFALSRLLEGDYF 115 (277)
T ss_pred HHHHHH-hcC----CCCeEEEEeCCCC-CccccCCHH---------HHHHHHHHHHcCCce
Confidence 999999 652 5789999999998 888877632 577888899888743
No 25
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.14 E-value=1.6e-05 Score=81.22 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=74.7
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEcc-CchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcC
Q 011293 35 PRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEE-APDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGG 112 (489)
Q Consensus 35 ~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~-~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GG 112 (489)
.+++++||+|| |...+.+.+..+.+.|....+ +.+... ........+... .....+.||++||
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~-------------~~~~~d~vi~~GG 66 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLAS-------------ASELIDLAIVLGG 66 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhc-------------cccCcCEEEEECC
Confidence 45789999998 545666778888888865543 223221 111111100000 0123578999999
Q ss_pred chHHHHHHHHHhhccCCCCCcEEEeeC-CCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEe
Q 011293 113 DGTAGWLLGVVCDLKLSHPPPIATVPL-GTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILM 185 (489)
Q Consensus 113 DGTv~~vl~~l~~~~~~~~~plgiIP~-GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~ 185 (489)
|||++.+++.+.. ..+|+..|.+ |+-.=|+..-... .. .++++.+.++...--.+..+.+
T Consensus 67 DGT~l~~~~~~~~----~~~pv~gin~~G~lGFL~~~~~~~--------~~-~~~l~~i~~g~~~i~~r~~L~~ 127 (305)
T PRK02645 67 DGTVLAAARHLAP----HDIPILSVNVGGHLGFLTHPRDLL--------QD-ESVWDRLQEDRYAIERRMMLQA 127 (305)
T ss_pred cHHHHHHHHHhcc----CCCCEEEEecCCcceEecCchhhc--------ch-HHHHHHHHcCCceEEEeeEEEE
Confidence 9999999998863 5788999998 7654444211111 12 5688899888865444444443
No 26
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.75 E-value=0.0002 Score=72.77 Aligned_cols=123 Identities=16% Similarity=0.145 Sum_probs=75.1
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhh-cCCcEEEEEcC
Q 011293 35 PRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQI-QERLRIIVAGG 112 (489)
Q Consensus 35 ~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~-~~~~~IIv~GG 112 (489)
.++.+.||.|+.. ..+.+++..+.+.|....+ +.+... ....+. .. ... .. .+ ... .+.+.||++||
T Consensus 4 ~~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~g~~v~~~~~-~~~~~~-~~-~~~----~~-~~-~~~~~~~d~vi~lGG 72 (292)
T PRK03378 4 HFKCIGIVGHPRH--PTALTTHEMLYHWLTSKGYEVIVEQQ-IAHELQ-LK-NVK----TG-TL-AEIGQQADLAIVVGG 72 (292)
T ss_pred cCCEEEEEEeCCC--HHHHHHHHHHHHHHHHCCCEEEEecc-hhhhcC-cc-ccc----cc-ch-hhcCCCCCEEEEECC
Confidence 3667999999755 5677788888888876654 323211 111000 00 000 00 00 011 23578999999
Q ss_pred chHHHHHHHHHhhccCCCCCcEEEeeCCCCC-chhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEE
Q 011293 113 DGTAGWLLGVVCDLKLSHPPPIATVPLGTGN-NLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHI 183 (489)
Q Consensus 113 DGTv~~vl~~l~~~~~~~~~plgiIP~GTGN-DfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i 183 (489)
|||+..++..+.. .. +.+||.++|| .|...+.. +.+...++.+.++....-.+..+
T Consensus 73 DGT~L~aa~~~~~----~~--~Pilgin~G~lGFl~~~~~---------~~~~~~l~~i~~g~~~i~~r~~L 129 (292)
T PRK03378 73 DGNMLGAARVLAR----YD--IKVIGINRGNLGFLTDLDP---------DNALQQLSDVLEGHYISEKRFLL 129 (292)
T ss_pred cHHHHHHHHHhcC----CC--CeEEEEECCCCCcccccCH---------HHHHHHHHHHHcCCceEEEEEEE
Confidence 9999999987753 23 4578888888 77776653 25778888998887543344444
No 27
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.55 E-value=0.036 Score=55.37 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=37.8
Q ss_pred CCCceeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEEEEeCCeeeEEec
Q 011293 373 SGHGTRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVEISHHGQVNILAT 432 (489)
Q Consensus 373 ~g~~~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~~~~v~~L~~ 432 (489)
.+.++.+.+.++|+|++.+ +..+++|||..... +++.|++++ .+++++.+
T Consensus 187 ~~rpiVlp~~~~I~I~~~~----~~~l~iDGe~~~~~-----~~I~I~~s~-~~l~li~~ 236 (256)
T PRK14075 187 ATRSIVIPSNEKVTVESQR----DINLIVDGVLVGKT-----NRITVKKSR-RYVRILRP 236 (256)
T ss_pred CCCceEcCCCCEEEEEECC----ceEEEECCCCcCCC-----cEEEEEECC-CEEEEEEc
Confidence 3455556677888888764 78899999986542 479999996 59999984
No 28
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=97.49 E-value=0.00044 Score=70.64 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=43.8
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcC
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNA 173 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a 173 (489)
+-+.|+.+|||||+-.|++++. .++|+=-||+||-|-++ .+-+. +++..+++..+.++
T Consensus 100 gVdlIvfaGGDGTarDVa~av~-----~~vPvLGipaGvk~~Sg-vfA~~-------P~~aa~l~~~~lkg 157 (355)
T COG3199 100 GVDLIVFAGGDGTARDVAEAVG-----ADVPVLGIPAGVKNYSG-VFALS-------PEDAARLLGAFLKG 157 (355)
T ss_pred CceEEEEeCCCccHHHHHhhcc-----CCCceEeeccccceecc-ccccC-------hHHHHHHHHHHhcc
Confidence 3578999999999999999873 57899999999966543 22222 24677788888877
No 29
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.41 E-value=0.0018 Score=66.08 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=71.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEcc-C---chhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEE
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEE-A---PDKALRRIYLNLETLKANGDAYATQIQERLRIIVA 110 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~-~---p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~ 110 (489)
++.+.||+|+.. ..+.++++.+.+.|.+..+ +.+... . +.+... .. ..+. + ..+.+.||++
T Consensus 4 ~~~v~iv~~~~k--~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~-~~-~~~~-------~---~~~~d~vi~~ 69 (295)
T PRK01231 4 FRNIGLIGRLGS--SSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQ-TV-SRKL-------L---GEVCDLVIVV 69 (295)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccc-cc-chhh-------c---ccCCCEEEEE
Confidence 346999999776 4677788888888866544 333211 1 110000 00 0000 0 1235789999
Q ss_pred cCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEE
Q 011293 111 GGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHIL 184 (489)
Q Consensus 111 GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~ 184 (489)
|||||+..++..+. ...+||--|.+|+- |.-.. .+.+.+.++|+.+.++....-.+..+.
T Consensus 70 GGDGt~l~~~~~~~----~~~~Pvlgin~G~l-------GFl~~---~~~~~~~~~l~~~~~g~~~i~~r~~L~ 129 (295)
T PRK01231 70 GGDGSLLGAARALA----RHNVPVLGINRGRL-------GFLTD---IRPDELEFKLAEVLDGHYQEEERFLLE 129 (295)
T ss_pred eCcHHHHHHHHHhc----CCCCCEEEEeCCcc-------ccccc---CCHHHHHHHHHHHHcCCceEEEEEEEE
Confidence 99999999998775 24677666777752 32221 123468888999998875444444444
No 30
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.11 E-value=0.0036 Score=63.41 Aligned_cols=69 Identities=23% Similarity=0.213 Sum_probs=49.3
Q ss_pred cCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEE
Q 011293 102 QERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNW 181 (489)
Q Consensus 102 ~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w 181 (489)
++.+.||++|||||+-.++..+.. ..+||--|++|| +.|.-.+... ++..+++.+.++....-.+.
T Consensus 75 ~~~D~ii~lGGDGT~L~~~~~~~~----~~~Pilgin~G~-lgfl~~~~~~---------~~~~~l~~~~~g~~~~~~r~ 140 (285)
T PF01513_consen 75 EGVDLIIVLGGDGTFLRAARLFGD----YDIPILGINTGT-LGFLTEFEPE---------DIEEALEKILAGEYSIEERM 140 (285)
T ss_dssp CCSSEEEEEESHHHHHHHHHHCTT----ST-EEEEEESSS-STSSSSEEGC---------GHHHHHHHHHHTHCEEEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHhcc----CCCcEEeecCCC-ccccccCCHH---------HHHHHHHHHhcCCeEEEEee
Confidence 356899999999999999987652 578999999999 4554444333 57778888888776544444
Q ss_pred EEE
Q 011293 182 HIL 184 (489)
Q Consensus 182 ~i~ 184 (489)
.+.
T Consensus 141 ~l~ 143 (285)
T PF01513_consen 141 RLE 143 (285)
T ss_dssp EEE
T ss_pred eEE
Confidence 444
No 31
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.91 E-value=0.013 Score=59.50 Aligned_cols=117 Identities=13% Similarity=0.112 Sum_probs=69.6
Q ss_pred CCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEE
Q 011293 32 PDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVA 110 (489)
Q Consensus 32 ~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~ 110 (489)
++..++++.||+|+. . .+.++++.+.+.|...++ +.+.. ..... + . .. +-.+....++.+.||+.
T Consensus 6 ~~~~~~~i~ii~~~~--~-~~~~~~~~i~~~l~~~g~~~~~~~-~~~~~---~-~-~~-----~~~~~~~~~~~Dlvi~i 71 (287)
T PRK14077 6 DHKNIKKIGLVTRPN--V-SLDKEILKLQKILSIYKVEILLEK-ESAEI---L-D-LP-----GYGLDELFKISDFLISL 71 (287)
T ss_pred ccccCCEEEEEeCCc--H-HHHHHHHHHHHHHHHCCCEEEEec-chhhh---h-c-cc-----ccchhhcccCCCEEEEE
Confidence 345577899999986 3 677888899988876655 33321 11110 0 0 00 00000001235789999
Q ss_pred cCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCcee
Q 011293 111 GGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEM 176 (489)
Q Consensus 111 GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~ 176 (489)
|||||+-.++..+.. ..+||--|-+|+ ||.=.. -..+.+.++++.+.++...
T Consensus 72 GGDGT~L~aa~~~~~----~~~PilGIN~G~-------lGFLt~---~~~~~~~~~l~~i~~g~y~ 123 (287)
T PRK14077 72 GGDGTLISLCRKAAE----YDKFVLGIHAGH-------LGFLTD---ITVDEAEKFFQAFFQGEFE 123 (287)
T ss_pred CCCHHHHHHHHHhcC----CCCcEEEEeCCC-------cccCCc---CCHHHHHHHHHHHHcCCCe
Confidence 999999888876642 356655567776 333221 1234688889999888744
No 32
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.84 E-value=0.018 Score=58.80 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=72.4
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEcc-Cc-hhHHHHHH-HHHHHhhhccchhhhhh-cCCcEEE
Q 011293 34 VPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEE-AP-DKALRRIY-LNLETLKANGDAYATQI-QERLRII 108 (489)
Q Consensus 34 ~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~-~p-~~~l~~l~-~~l~~l~~~~~~~a~~~-~~~~~II 108 (489)
.+++++.||+|+.. ..+.+++..+.+.|...++ +.+... .. ..... +. ..... . .. ... ...+.||
T Consensus 3 ~~~~~i~ii~~~~~--~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~----~-~~-~~~~~~~D~vi 73 (296)
T PRK04539 3 SPFHNIGIVTRPNT--PDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYT-QDTVGCHI----V-NK-TELGQYCDLVA 73 (296)
T ss_pred CCCCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecccccccchhc-cccccccc----c-ch-hhcCcCCCEEE
Confidence 45778999999855 4677788888888876554 323211 00 00000 00 00000 0 00 011 2357899
Q ss_pred EEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEE
Q 011293 109 VAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHI 183 (489)
Q Consensus 109 v~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i 183 (489)
++|||||+-.++..+.. ..+||--|-+|+ ||.=.. -..+.+...++.+.++....-.+..+
T Consensus 74 ~lGGDGT~L~aa~~~~~----~~~PilGIN~G~-------lGFL~~---~~~~~~~~~l~~i~~g~~~~~~r~~l 134 (296)
T PRK04539 74 VLGGDGTFLSVAREIAP----RAVPIIGINQGH-------LGFLTQ---IPREYMTDKLLPVLEGKYLAEERILI 134 (296)
T ss_pred EECCcHHHHHHHHHhcc----cCCCEEEEecCC-------CeEeec---cCHHHHHHHHHHHHcCCceEEEeeeE
Confidence 99999999988877652 356665577776 444321 12346788888998887543333333
No 33
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.80 E-value=0.019 Score=58.85 Aligned_cols=125 Identities=13% Similarity=0.130 Sum_probs=71.0
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhcc---chhh--hhh-cCCcE
Q 011293 34 VPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANG---DAYA--TQI-QERLR 106 (489)
Q Consensus 34 ~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~---~~~a--~~~-~~~~~ 106 (489)
.+++++.||.|+.. ..+.+++..+.+.|...++ +.+.... ... +....... ..+ ..+. ... +..+.
T Consensus 3 ~~~~~I~iv~~~~~--~~~~~~~~~l~~~L~~~g~~v~~~~~~-~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~ 75 (306)
T PRK03372 3 TASRRVLLVAHTGR--DEATEAARRVAKQLGDAGIGVRVLDAE-AVD---LGATHPAP-DDFRAMEVVDADPDAADGCEL 75 (306)
T ss_pred CCccEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEeech-hhh---hccccccc-ccccccccccchhhcccCCCE
Confidence 35677999988744 5667788888888876554 2222111 110 00000000 000 0000 011 23578
Q ss_pred EEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEe
Q 011293 107 IIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKID 179 (489)
Q Consensus 107 IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD 179 (489)
||++|||||+-.++..+. ...+||--|.+|+- |.=.. ...+.+..+|+.+.++...--.
T Consensus 76 vi~lGGDGT~L~aar~~~----~~~~PilGIN~G~l-------GFL~~---~~~~~~~~~l~~i~~g~y~i~~ 134 (306)
T PRK03372 76 VLVLGGDGTILRAAELAR----AADVPVLGVNLGHV-------GFLAE---AEAEDLDEAVERVVDRDYRVEE 134 (306)
T ss_pred EEEEcCCHHHHHHHHHhc----cCCCcEEEEecCCC-------ceecc---CCHHHHHHHHHHHHcCCceEEE
Confidence 999999999998887764 24677777888873 33221 1234678889999988854333
No 34
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=96.67 E-value=0.021 Score=58.09 Aligned_cols=123 Identities=12% Similarity=0.084 Sum_probs=71.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhh-hhh-cCCcEEEEEcC
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYA-TQI-QERLRIIVAGG 112 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a-~~~-~~~~~IIv~GG 112 (489)
++.+.||.|+.+ ..+.+++..+.+.|....+ +.+....... .. . ..+. .+. ... ...+.||++||
T Consensus 5 ~~~v~iv~~~~~--~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~-~~-~-~~~~-------~~~~~~~~~~~d~vi~~GG 72 (291)
T PRK02155 5 FKTVALIGRYQT--PGIAEPLESLAAFLAKRGFEVVFEADTARN-IG-L-TGYP-------ALTPEEIGARADLAVVLGG 72 (291)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEecchhhh-cC-c-cccc-------ccChhHhccCCCEEEEECC
Confidence 456888988755 4667778888888876554 2232111000 00 0 0000 000 011 23578999999
Q ss_pred chHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEE
Q 011293 113 DGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHIL 184 (489)
Q Consensus 113 DGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~ 184 (489)
|||+..++..+.. ..+|+--|-+|+-.=|+ .+. .+.+.++|+.+.++....-.++.+.
T Consensus 73 DGt~l~~~~~~~~----~~~pilGIn~G~lGFL~---~~~-------~~~~~~~l~~~~~g~~~i~~r~~L~ 130 (291)
T PRK02155 73 DGTMLGIGRQLAP----YGVPLIGINHGRLGFIT---DIP-------LDDMQETLPPMLAGNYEEEERMLLE 130 (291)
T ss_pred cHHHHHHHHHhcC----CCCCEEEEcCCCccccc---cCC-------HHHHHHHHHHHHcCCceEEEeEEEE
Confidence 9999999988752 45665557777642222 222 3468888999988885444444443
No 35
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.66 E-value=0.034 Score=57.03 Aligned_cols=123 Identities=14% Similarity=0.075 Sum_probs=66.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHH-HHhhhccchh-hhhh-cCCcEEEEEc
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNL-ETLKANGDAY-ATQI-QERLRIIVAG 111 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l-~~l~~~~~~~-a~~~-~~~~~IIv~G 111 (489)
|+++.||+|+.. ..+.+++..+.+.|...++ +.+... ....+. ..... ...+..-++. .... +..+.||++|
T Consensus 1 m~~igiv~n~~~--~~~~~~~~~l~~~L~~~g~~v~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iG 76 (305)
T PRK02649 1 MPKAGIIYNDGK--PLAVRTAEELQDKLEAAGWEVVRASS-SGGILG-YANPDQPVCHTGIDQLVPPGFDSSMKFAIVLG 76 (305)
T ss_pred CCEEEEEEcCCC--HHHHHHHHHHHHHHHHCCCEEEEecc-hhhhcC-ccccccccccccccccChhhcccCcCEEEEEe
Confidence 456889999743 4577788888888876654 333221 011000 00000 0000000000 0011 2357899999
Q ss_pred CchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCcee
Q 011293 112 GDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEM 176 (489)
Q Consensus 112 GDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~ 176 (489)
||||+-.++..+.. ..+||--|-+|+ ||.=.. -..+.+.++|+.+.++...
T Consensus 77 GDGTlL~aar~~~~----~~iPilGIN~G~-------lGFLt~---~~~~~~~~~l~~l~~g~y~ 127 (305)
T PRK02649 77 GDGTVLSAARQLAP----CGIPLLTINTGH-------LGFLTE---AYLNQLDEAIDQVLAGQYT 127 (305)
T ss_pred CcHHHHHHHHHhcC----CCCcEEEEeCCC-------Cccccc---CCHHHHHHHHHHHHcCCcE
Confidence 99999988877652 456655566665 342211 1234688899999988754
No 36
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.19 E-value=0.081 Score=53.92 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=68.7
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHH--H-HHHHHHhhhccchhhhhh-cCCcEEEEEcC
Q 011293 38 PVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRR--I-YLNLETLKANGDAYATQI-QERLRIIVAGG 112 (489)
Q Consensus 38 ~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~--l-~~~l~~l~~~~~~~a~~~-~~~~~IIv~GG 112 (489)
++.||+|+.. ..+.++++.+.+.|...++ +.+... ....+.. . ...+... +.. ... ++.+.||+.||
T Consensus 2 ~igii~~~~~--~~~~~~~~~i~~~l~~~g~~v~~~~~-~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~dlvi~lGG 73 (292)
T PRK01911 2 KIAIFGQTYQ--ESASPYIQELFDELEERGAEVLIEEK-FLDFLKQDLKFHPSYDTF----SDN-EELDGSADMVISIGG 73 (292)
T ss_pred EEEEEeCCCC--HHHHHHHHHHHHHHHHCCCEEEEecc-hhhhhccccccccccccc----cch-hhcccCCCEEEEECC
Confidence 3778888744 5667788888888876654 333221 0000000 0 0000000 000 011 23578999999
Q ss_pred chHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEE
Q 011293 113 DGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHI 183 (489)
Q Consensus 113 DGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i 183 (489)
|||+-.++..+.. ..+||--|-+|+ ||.=.. -..+.+.++|+.+.++...--.+..+
T Consensus 74 DGT~L~aa~~~~~----~~~PilGIN~G~-------lGFLt~---~~~~~~~~~l~~i~~g~~~i~~r~~L 130 (292)
T PRK01911 74 DGTFLRTATYVGN----SNIPILGINTGR-------LGFLAT---VSKEEIEETIDELLNGDYTIEERSLL 130 (292)
T ss_pred cHHHHHHHHHhcC----CCCCEEEEecCC-------CCcccc---cCHHHHHHHHHHHHcCCceEEEEeeE
Confidence 9999888876652 356655577776 343321 12346788899999888543333333
No 37
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.14 E-value=0.069 Score=53.63 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=61.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCeEEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchH
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQVFDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGT 115 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGT 115 (489)
+..+.+|+|+.. .+.++++.++++|...++-... . ..+.+.||+.|||||
T Consensus 2 ~~~i~iv~~~~~---~a~~~~~~l~~~l~~~g~~~~~-~--------------------------~~~~D~vi~lGGDGT 51 (264)
T PRK03501 2 RRNLFFFYKRDK---ELVEKVKPLKKIAEEYGFTVVD-H--------------------------PKNANIIVSIGGDGT 51 (264)
T ss_pred CcEEEEEECCCH---HHHHHHHHHHHHHHHCCCEEEc-C--------------------------CCCccEEEEECCcHH
Confidence 346778888666 6667888888888765541110 0 012468999999999
Q ss_pred HHHHHHHHhhccCCCCCcEEEeeC-CCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCcee
Q 011293 116 AGWLLGVVCDLKLSHPPPIATVPL-GTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEM 176 (489)
Q Consensus 116 v~~vl~~l~~~~~~~~~plgiIP~-GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~ 176 (489)
+-.++..+.. ...+|+--|.+ |+ ||.=.. -..+.+.++++.+.++...
T Consensus 52 ~L~a~~~~~~---~~~~pilgIn~~G~-------lGFL~~---~~~~~~~~~l~~i~~g~~~ 100 (264)
T PRK03501 52 FLQAVRKTGF---REDCLYAGISTKDQ-------LGFYCD---FHIDDLDKMIQAITKEEIE 100 (264)
T ss_pred HHHHHHHhcc---cCCCeEEeEecCCC-------CeEccc---CCHHHHHHHHHHHHcCCcE
Confidence 9888776542 12456433555 53 333221 1234688889999888754
No 38
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=95.42 E-value=0.17 Score=54.85 Aligned_cols=127 Identities=17% Similarity=0.234 Sum_probs=67.5
Q ss_pred CCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhcc-CCe-EEEEccCchhHHH--HHHHHHHHhhhccchhhhhh-cCCcE
Q 011293 32 PDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNK-NQV-FDVGEEAPDKALR--RIYLNLETLKANGDAYATQI-QERLR 106 (489)
Q Consensus 32 ~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~-~~V-~dl~~~~p~~~l~--~l~~~l~~l~~~~~~~a~~~-~~~~~ 106 (489)
-..+.+.++||.||.. ..+..++..+...|.. ..+ +.+... ....+. ...............+ ... .+.+.
T Consensus 190 w~~~p~~VgIV~n~~k--~~a~el~~~I~~~L~~~~gi~V~ve~~-~a~~l~~~~~~~~~~~~~~~~~~~-~~l~~~~Dl 265 (508)
T PLN02935 190 WESDPQTVLIITKPNS--TSVRVLCAEMVRWLREQKGLNIYVEPR-VKKELLSESSYFNFVQTWEDEKEI-LLLHTKVDL 265 (508)
T ss_pred ecCCCCEEEEEecCCC--HHHHHHHHHHHHHHHhcCCCEEEEech-hhhhhccccccccccccccccchh-hhcccCCCE
Confidence 3555788999999865 4566778888887762 333 222211 000000 0000000000000000 001 23579
Q ss_pred EEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCcee
Q 011293 107 IIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEM 176 (489)
Q Consensus 107 IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~ 176 (489)
||++|||||+-.++..+.. ..+||--|.+|+ ||.=.. -..+.+.++|+.|.++...
T Consensus 266 VIsiGGDGTlL~Aar~~~~----~~iPILGIN~G~-------LGFLt~---i~~~e~~~~Le~il~G~y~ 321 (508)
T PLN02935 266 VITLGGDGTVLWAASMFKG----PVPPVVPFSMGS-------LGFMTP---FHSEQYRDCLDAILKGPIS 321 (508)
T ss_pred EEEECCcHHHHHHHHHhcc----CCCcEEEEeCCC-------cceecc---cCHHHHHHHHHHHHcCCce
Confidence 9999999999998887653 345655566665 222111 1234688889999888753
No 39
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.04 E-value=0.3 Score=48.91 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=37.1
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHH-HHHHHHcCc
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQ-FLRHVMNAK 174 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~-~l~~i~~a~ 174 (489)
..+.||+.|||||+-.++..+. ...+|+--|-+|+ +|.=.. -..+.+.+ +++.+.+.+
T Consensus 33 ~~D~vi~iGGDGT~L~a~~~~~----~~~iPilGIN~G~-------lGFL~~---~~~~~~~~~~~~~l~~~~ 91 (259)
T PRK00561 33 GADYLFVLGGDGFFVSTAANYN----CAGCKVVGINTGH-------LGFYTS---FNETDLDQNFANKLDQLK 91 (259)
T ss_pred CCCEEEEECCcHHHHHHHHHhc----CCCCcEEEEecCC-------Cccccc---cCHHHHHHHHHHHHhhCC
Confidence 3578999999999988887654 2467766677775 333221 11235666 677776533
No 40
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.85 E-value=0.41 Score=53.31 Aligned_cols=121 Identities=16% Similarity=0.203 Sum_probs=67.1
Q ss_pred cCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEE
Q 011293 31 VPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIV 109 (489)
Q Consensus 31 ~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv 109 (489)
+...|+ ++.||.|+. ...+.++++.+.+.|...++ +.+... .... +...+.+ ..+ ......+.+.||+
T Consensus 286 w~~~~~-~i~iv~~~~--~~~~~~~~~~i~~~l~~~~~~v~~~~~-~~~~---~~~~~~~---~~~-~~~~~~~~dlvi~ 354 (569)
T PRK14076 286 WRIKPT-KFGIVSRID--NEEAINLALKIIKYLDSKGIPYELESF-LYNK---LKNRLNE---ECN-LIDDIEEISHIIS 354 (569)
T ss_pred cccCCc-EEEEEcCCC--CHHHHHHHHHHHHHHHHCCCEEEEech-hhhh---hcccccc---ccc-ccccccCCCEEEE
Confidence 333444 477777764 34666778888887765554 323211 0000 1000000 000 0000123478999
Q ss_pred EcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCcee
Q 011293 110 AGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEM 176 (489)
Q Consensus 110 ~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~ 176 (489)
.|||||+-.++..+.. ..+||--|-+|+ ||.=.. ...+.+.+.|+.+.++...
T Consensus 355 lGGDGT~L~aa~~~~~----~~~PilGin~G~-------lGFL~~---~~~~~~~~~l~~~~~g~~~ 407 (569)
T PRK14076 355 IGGDGTVLRASKLVNG----EEIPIICINMGT-------VGFLTE---FSKEEIFKAIDSIISGEYE 407 (569)
T ss_pred ECCcHHHHHHHHHhcC----CCCCEEEEcCCC-------CCcCcc---cCHHHHHHHHHHHHcCCce
Confidence 9999999888876642 466766688887 333221 1234688889999988754
No 41
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.85 E-value=0.24 Score=49.79 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=58.5
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHhccCCeEEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHHHH
Q 011293 39 VLVFINSKSGGQLGGDLLVTYRSLLNKNQVFDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTAGW 118 (489)
Q Consensus 39 vlvivNP~SG~~~g~~~l~~~~~~L~~~~V~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~ 118 (489)
+.||.|+ ..++.++.+.+.+.|...++ .+. .++.+.||+.|||||+-.
T Consensus 3 i~Ii~~~---~~~~~~~~~~l~~~l~~~g~-~~~----------------------------~~~~Dlvi~iGGDGT~L~ 50 (265)
T PRK04885 3 VAIISNG---DPKSKRVASKLKKYLKDFGF-ILD----------------------------EKNPDIVISVGGDGTLLS 50 (265)
T ss_pred EEEEeCC---CHHHHHHHHHHHHHHHHcCC-ccC----------------------------CcCCCEEEEECCcHHHHH
Confidence 5667663 34566777777777765432 110 013578999999999988
Q ss_pred HHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceee
Q 011293 119 LLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMK 177 (489)
Q Consensus 119 vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~ 177 (489)
.+..+... ..++|+--|.+|+-.=|+ .+. .+.+.++++.+.++....
T Consensus 51 a~~~~~~~--~~~iPilGIN~G~lGFL~---~~~-------~~~~~~~l~~i~~g~y~i 97 (265)
T PRK04885 51 AFHRYENQ--LDKVRFVGVHTGHLGFYT---DWR-------PFEVDKLVIALAKDPGQV 97 (265)
T ss_pred HHHHhccc--CCCCeEEEEeCCCceecc---cCC-------HHHHHHHHHHHHcCCceE
Confidence 88766421 135666557777632222 122 236788899999887543
No 42
>PLN02727 NAD kinase
Probab=93.92 E-value=0.43 Score=55.10 Aligned_cols=125 Identities=16% Similarity=0.177 Sum_probs=68.9
Q ss_pred cCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccC-Ce-EEEEccCchhHHHHHHHHHHHhhh-ccchhhhhh-cCCcE
Q 011293 31 VPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKN-QV-FDVGEEAPDKALRRIYLNLETLKA-NGDAYATQI-QERLR 106 (489)
Q Consensus 31 ~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~-~V-~dl~~~~p~~~l~~l~~~l~~l~~-~~~~~a~~~-~~~~~ 106 (489)
.-..|.+.|+||.++.. .....+..+.+.|... .+ +-+.. ...+.+... ..+..... .... .... ...+.
T Consensus 673 ~W~~p~rtVgIV~K~~~---ea~~~~~eL~~~L~~~~gi~V~VE~-~~a~~l~~~-~~~~~~~~~~~~~-~~el~~~~DL 746 (986)
T PLN02727 673 MWKSTPKTVLLLKKLGQ---ELMEEAKEVASFLYHQEKMNVLVEP-DVHDIFARI-PGFGFVQTFYSQD-TSDLHERVDF 746 (986)
T ss_pred ecCCCCCEEEEEcCCcH---HHHHHHHHHHHHHHhCCCeEEEEec-chHHHhhcc-ccccccceecccc-hhhcccCCCE
Confidence 34567889999999876 4666777778877764 44 22221 111111000 00000000 0000 0011 23578
Q ss_pred EEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCce
Q 011293 107 IIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKE 175 (489)
Q Consensus 107 IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~ 175 (489)
||++|||||+-.++..+.. ..+||--|-+|+ ||.=.. .+.+.+.+.|+.|.++..
T Consensus 747 VIvLGGDGTlLrAar~~~~----~~iPILGINlGr-------LGFLTd---i~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 747 VACLGGDGVILHASNLFRG----AVPPVVSFNLGS-------LGFLTS---HYFEDFRQDLRQVIHGNN 801 (986)
T ss_pred EEEECCcHHHHHHHHHhcC----CCCCEEEEeCCC-------cccccc---CCHHHHHHHHHHHHcCCc
Confidence 9999999999988887653 456766677775 343221 123457778888877763
No 43
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.40 E-value=0.63 Score=46.96 Aligned_cols=111 Identities=18% Similarity=0.157 Sum_probs=60.2
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHHH
Q 011293 39 VLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTAG 117 (489)
Q Consensus 39 vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~ 117 (489)
+.|++|+.. ..+.++++.+.+.|. .++ +.+... .... + . ... . .. .. .+.+.||++|||||+-
T Consensus 3 i~iv~~~~~--~~~~~~~~~i~~~l~-~g~~~~~~~~-~~~~---~-~-~~~----~-~~-~~-~~~D~vi~lGGDGT~L 66 (271)
T PRK01185 3 VAFVIRKDC--KRCIKIAKSIIELLP-PDWEIIYEME-AAKA---L-G-MDG----L-DI-EE-INADVIITIGGDGTIL 66 (271)
T ss_pred EEEEecCCC--HHHHHHHHHHHHHHh-cCCEEEEech-hhhh---c-C-ccc----C-cc-cc-cCCCEEEEEcCcHHHH
Confidence 778888744 466777888888773 343 222211 1110 0 0 000 0 00 01 1357999999999987
Q ss_pred HHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEE
Q 011293 118 WLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWH 182 (489)
Q Consensus 118 ~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~ 182 (489)
.++..+. +||--|-+|+- |.=.. -..+.+.++|+.+.++...--.+..
T Consensus 67 ~a~~~~~-------~PilGIN~G~l-------GFL~~---~~~~~~~~~l~~i~~g~~~i~~r~~ 114 (271)
T PRK01185 67 RTLQRAK-------GPILGINMGGL-------GFLTE---IEIDEVGSAIKKLIRGEYFIDERMK 114 (271)
T ss_pred HHHHHcC-------CCEEEEECCCC-------ccCcc---cCHHHHHHHHHHHHcCCcEEEEeeE
Confidence 6665431 24444577763 33221 1234688889999988754333333
No 44
>PLN02929 NADH kinase
Probab=91.39 E-value=1.1 Score=45.79 Aligned_cols=70 Identities=19% Similarity=0.178 Sum_probs=45.2
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCC---------Cch--hhhccCCCCCCCCChHHHHHHHHHHH
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTG---------NNL--PFAFGWGKKNPGTDRHAVEQFLRHVM 171 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTG---------NDf--ArsLG~~~~~~~~~~~~l~~~l~~i~ 171 (489)
..+.||++|||||+-.++..+ . ..+||--|-.|+. |.| .|++|.=.. ...+++.++|+.+.
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~-~----~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~---~~~~~~~~~L~~il 135 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFL-D----DSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCA---ATAEDFEQVLDDVL 135 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHc-C----CCCcEEEEECCCcccccccccccccccccCcccccc---CCHHHHHHHHHHHH
Confidence 457999999999998877765 2 3456544666741 223 345665432 23457888999999
Q ss_pred cCceeeEeE
Q 011293 172 NAKEMKIDN 180 (489)
Q Consensus 172 ~a~~~~iD~ 180 (489)
+|....-.+
T Consensus 136 ~g~~~~~~r 144 (301)
T PLN02929 136 FGRLKPTEL 144 (301)
T ss_pred cCCceEEEe
Confidence 887543333
No 45
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.25 E-value=1.3 Score=44.85 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=36.6
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHc-Cce
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMN-AKE 175 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~-a~~ 175 (489)
+.+.||++|||||+-.++..+.. ..+||--|-+|+ +|.=.. ...+.+.+.++.+.+ +..
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~~----~~~PilgIn~G~-------lGFL~~---~~~~~~~~~l~~~~~~g~~ 101 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLAK----YDIPLIGINRGN-------LGFLTD---IDPKNAYEQLEACLERGEF 101 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhcc----CCCcEEEEeCCC-------Cccccc---CCHHHHHHHHHHHHhcCCc
Confidence 35789999999999888876642 355654467777 343221 112345566666665 553
No 46
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=89.21 E-value=0.54 Score=46.80 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=26.6
Q ss_pred cCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCC
Q 011293 102 QERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGT 141 (489)
Q Consensus 102 ~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GT 141 (489)
.+.+.||++|||||+-.++..... ..+|+--|-+|+
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~----~~~PvlGIN~G~ 59 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMN----SGKPVYGMNRGS 59 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcC----CCCeEEEEeCCC
Confidence 345799999999999888876542 456655577775
No 47
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=86.58 E-value=3.3 Score=44.13 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=36.6
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhccCC------CCCcEEEeeCCCCCchhhhccC
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLKLS------HPPPIATVPLGTGNNLPFAFGW 151 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~~~------~~~plgiIP~GTGNDfArsLG~ 151 (489)
...+|+|+|||-=++.||.....+-.. .-.-+-+||+|+ |-+||.||-
T Consensus 75 ~~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl~~~rFlvIPlGs-~~varyLgs 128 (414)
T PF10254_consen 75 PPVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWLNYLRFLVIPLGS-HPVARYLGS 128 (414)
T ss_pred CceEEEEEccHHHHHHHHHHHHHHhccCCcccccceeEEEecCCC-CHHHHHHhc
Confidence 356899999999999999776542111 233478999999 999999974
No 48
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=85.12 E-value=4.4 Score=42.83 Aligned_cols=124 Identities=13% Similarity=0.160 Sum_probs=65.3
Q ss_pred cccccceeecCCCC-Cc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCchhHHHHHHH
Q 011293 14 EFYIPSYVLLPDSE-SE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPDKALRRIYL 85 (489)
Q Consensus 14 ~~~~~~~~~~~~~~-~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~~~l~~l~~ 85 (489)
.|++|++|...... .+ .......++++|+.-+.. ....++..+.+.|....+ +.+.. ..|.. +.+.+
T Consensus 5 ~~~~p~~i~~G~g~~~~l~~~~~~~g~~~~livt~~~~---~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~--~~v~~ 79 (383)
T PRK09860 5 TFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDNML---TKLGMAGDVQKALEERNIFSVIYDGTQPNPTT--ENVAA 79 (383)
T ss_pred ccccCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEeCCCCCCcCH--HHHHH
Confidence 47789886644332 22 223334467777754211 223356677887876544 33322 12322 21222
Q ss_pred HHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhh----------c-----cCCCCCcEEEeeC--CCCCchhhh
Q 011293 86 NLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCD----------L-----KLSHPPPIATVPL--GTGNNLPFA 148 (489)
Q Consensus 86 ~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~----------~-----~~~~~~plgiIP~--GTGNDfArs 148 (489)
.++. +++ .+.+.||++|| |++..+...+.- + .....+|+..||. |||-...+.
T Consensus 80 ~~~~--------~~~-~~~D~IiaiGG-GS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~~ 149 (383)
T PRK09860 80 GLKL--------LKE-NNCDSVISLGG-GSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRF 149 (383)
T ss_pred HHHH--------HHH-cCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCce
Confidence 2221 122 35678999998 444444433221 0 0124579999997 999887776
Q ss_pred ccCC
Q 011293 149 FGWG 152 (489)
Q Consensus 149 LG~~ 152 (489)
--+.
T Consensus 150 avi~ 153 (383)
T PRK09860 150 CIIT 153 (383)
T ss_pred EEEE
Confidence 6654
No 49
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=84.95 E-value=3.2 Score=42.86 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=27.6
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhc----cCCCCCcEEEeeC--CCCCchhh
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDL----KLSHPPPIATVPL--GTGNNLPF 147 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~----~~~~~~plgiIP~--GTGNDfAr 147 (489)
+.+.||++|| |++..+...+.-+ .....+|+..||. |||--...
T Consensus 78 ~~d~IiaiGG-Gs~~D~aKa~a~~~~~~~~~~~~p~i~VPTtagtgse~t~ 127 (332)
T cd08180 78 KPDIVIALGG-GSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTSGTGSEVTS 127 (332)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHhCCCCCCCCCEEEeCCCCcchHhhCC
Confidence 4578999998 6666666543211 1124579999996 77755444
No 50
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=84.69 E-value=3.4 Score=43.33 Aligned_cols=93 Identities=17% Similarity=0.159 Sum_probs=50.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCCe----EEEEcc--Cc-hhHHHHHHHHHHHhhhccchhhhhhcCCcEEEE
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV----FDVGEE--AP-DKALRRIYLNLETLKANGDAYATQIQERLRIIV 109 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V----~dl~~~--~p-~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv 109 (489)
++++|+..+..- ..+...+.+.|....+ +.+... .| -+.+++++..+. +. ...+...||+
T Consensus 24 ~rvlvVtd~~v~----~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~---~~------~~dr~~~IIA 90 (355)
T cd08197 24 DKYLLVTDSNVE----DLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERAL---AL------GATRRSVIVA 90 (355)
T ss_pred CeEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHH---Hc------CCCCCcEEEE
Confidence 678888875532 2255667777754322 222221 22 122333333221 10 1122346777
Q ss_pred EcCchHHHHHHHHHhhccCCCCCcEEEeeC--CCCCc
Q 011293 110 AGGDGTAGWLLGVVCDLKLSHPPPIATVPL--GTGNN 144 (489)
Q Consensus 110 ~GGDGTv~~vl~~l~~~~~~~~~plgiIP~--GTGND 144 (489)
+|| |++..+...+... ....+|+..||. |++.|
T Consensus 91 vGG-Gsv~D~ak~~A~~-~~rgip~I~IPTTlla~~d 125 (355)
T cd08197 91 LGG-GVVGNIAGLLAAL-LFRGIRLVHIPTTLLAQSD 125 (355)
T ss_pred ECC-cHHHHHHHHHHHH-hccCCCEEEecCccccccc
Confidence 776 8998888776532 124689999998 66666
No 51
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=84.36 E-value=5.7 Score=40.23 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=46.3
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEE
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWH 182 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~ 182 (489)
..+.|++.|||||+-.++..+.. ..+|+--|-+|+ +.+-..|. .+.++++++.+.+++....-+..
T Consensus 55 ~~d~ivvlGGDGtlL~~~~~~~~----~~~pilgin~G~---lGFLt~~~-------~~~~~~~~~~~~~~~~~~~~r~~ 120 (281)
T COG0061 55 KADLIVVLGGDGTLLRAARLLAR----LDIPVLGINLGH---LGFLTDFE-------PDELEKALDALLEGEYRIEERLL 120 (281)
T ss_pred CceEEEEeCCcHHHHHHHHHhcc----CCCCEEEEeCCC---cccccccC-------HHHHHHHHHHHhcCceEEEEeEE
Confidence 45789999999999998887763 345555555553 22322233 34788888888887766566666
Q ss_pred EEee
Q 011293 183 ILMR 186 (489)
Q Consensus 183 i~~~ 186 (489)
+.+.
T Consensus 121 l~~~ 124 (281)
T COG0061 121 LEVS 124 (281)
T ss_pred EEEE
Confidence 5543
No 52
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=83.79 E-value=4.4 Score=42.73 Aligned_cols=124 Identities=17% Similarity=0.168 Sum_probs=64.5
Q ss_pred cccccceeecCCCC-Cc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCchhHHHHHHH
Q 011293 14 EFYIPSYVLLPDSE-SE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPDKALRRIYL 85 (489)
Q Consensus 14 ~~~~~~~~~~~~~~-~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~~~l~~l~~ 85 (489)
+|+.|+.|.-.... .. ..... .++++|+.-+.+... ..+++.+.+.|....+ +.+.. ..|.. +.+.+
T Consensus 3 ~~~~p~~i~~G~g~~~~l~~~~~~~-~~r~livt~~~~~~~--~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~--~~v~~ 77 (382)
T cd08187 3 TFYNPTKIIFGKGTESELGKELKKY-GKKVLLVYGGGSIKK--NGLYDRVIASLKEAGIEVVELGGVEPNPRL--ETVRE 77 (382)
T ss_pred eecCCCEEEECCCHHHHHHHHHHHh-CCEEEEEeCCcHHHh--cCcHHHHHHHHHHcCCeEEEECCccCCCCH--HHHHH
Confidence 56788665544332 21 22222 367888866555432 2345667777765433 22221 22321 11222
Q ss_pred HHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhcc---------------CCCCCcEEEeeC--CCCCchhhh
Q 011293 86 NLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLK---------------LSHPPPIATVPL--GTGNNLPFA 148 (489)
Q Consensus 86 ~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~---------------~~~~~plgiIP~--GTGNDfArs 148 (489)
.++. +++ .+.+.||++|| |++..+...+.-+. ....+|+-.||. |||--..+.
T Consensus 78 ~~~~--------~~~-~~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE~t~~ 147 (382)
T cd08187 78 GIEL--------CKE-EKVDFILAVGG-GSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSEMNGG 147 (382)
T ss_pred HHHH--------HHH-cCCCEEEEeCC-hHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhccCCC
Confidence 2221 111 34678999998 77776665542210 023579999996 788766665
Q ss_pred ccCC
Q 011293 149 FGWG 152 (489)
Q Consensus 149 LG~~ 152 (489)
--+.
T Consensus 148 avi~ 151 (382)
T cd08187 148 AVIT 151 (382)
T ss_pred EEEe
Confidence 5443
No 53
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=83.50 E-value=4.2 Score=42.71 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=59.1
Q ss_pred ccccceeecC-CCCCcccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCchhHHHHHHHHHHH
Q 011293 15 FYIPSYVLLP-DSESETVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPDKALRRIYLNLET 89 (489)
Q Consensus 15 ~~~~~~~~~~-~~~~~~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~~~l~~l~~~l~~ 89 (489)
|+.|+.|... .+-... .....++++|+.-+.+-. ...++..+.+.|+...+ +.+.. ..|.. +.+.+.++.
T Consensus 2 ~~~p~~i~~G~g~l~~l-~~~~~~r~livt~~~~~~--~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~--~~v~~~~~~ 76 (375)
T cd08179 2 FTLPRDIYFGKGSLEYL-KTLKGKKAFIVTGGGSMK--KFGFLDKVEAYLKEAGIEVEVFEGVEPDPSV--ETVLKGAEA 76 (375)
T ss_pred ccCCceEEECcCHHHHH-HHhcCCeEEEEeCchHHH--hCChHHHHHHHHHHcCCeEEEeCCCCCCcCH--HHHHHHHHH
Confidence 5678655433 332222 112236777776544322 22356667777765433 22221 23322 112222211
Q ss_pred hhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHh---hc---------------cCCCCCcEEEeeC--CCCCchhhhc
Q 011293 90 LKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVC---DL---------------KLSHPPPIATVPL--GTGNNLPFAF 149 (489)
Q Consensus 90 l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~---~~---------------~~~~~~plgiIP~--GTGNDfArsL 149 (489)
+++ .+.+.||++|| |++..+...+. .. .....+|+..||. |||--..+.-
T Consensus 77 --------~~~-~~~D~IIavGG-GSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t~~a 146 (375)
T cd08179 77 --------MRE-FEPDWIIALGG-GSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVTAFS 146 (375)
T ss_pred --------HHh-cCCCEEEEeCC-ccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhCCeE
Confidence 111 24578888888 55555544332 10 0013468999996 7877665544
Q ss_pred cC
Q 011293 150 GW 151 (489)
Q Consensus 150 G~ 151 (489)
-+
T Consensus 147 vi 148 (375)
T cd08179 147 VI 148 (375)
T ss_pred EE
Confidence 43
No 54
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=83.10 E-value=4.3 Score=42.91 Aligned_cols=125 Identities=18% Similarity=0.221 Sum_probs=71.3
Q ss_pred ccccccceeecCCCC-Cc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCchhHHHHHH
Q 011293 13 KEFYIPSYVLLPDSE-SE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPDKALRRIY 84 (489)
Q Consensus 13 ~~~~~~~~~~~~~~~-~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~~~l~~l~ 84 (489)
..|++|+.|+-.... .+ .+..-.-++++|+.-|.- ....+++.+.+.|+...| |.+.. ..|.. +.+.
T Consensus 2 ~~~~~p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~~---~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~--~~v~ 76 (377)
T COG1454 2 NWFYLPTEILFGRGSLKELGEEVKRLGAKRALIVTDRGL---AKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTI--ETVE 76 (377)
T ss_pred cccccCceEEecCChHHHHHHHHHhcCCCceEEEECCcc---ccchhHHHHHHHHHhcCCeEEEecCCCCCCCH--HHHH
Confidence 346778666655444 22 222333478888877652 334578888888887764 44433 23322 2233
Q ss_pred HHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHh---hcc------------CCCCCcEEEee--CCCCCchhh
Q 011293 85 LNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVC---DLK------------LSHPPPIATVP--LGTGNNLPF 147 (489)
Q Consensus 85 ~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~---~~~------------~~~~~plgiIP--~GTGNDfAr 147 (489)
+.++..+ ..+.+.||+.|| |++..+...+. ... ...++||-.|| .|||..-.+
T Consensus 77 ~~~~~~~---------~~~~D~iIalGG-GS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~ 146 (377)
T COG1454 77 AGAEVAR---------EFGPDTIIALGG-GSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTP 146 (377)
T ss_pred HHHHHHH---------hcCCCEEEEeCC-ccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcC
Confidence 3333211 135688999988 66655554432 100 11237888888 588888887
Q ss_pred hccCC
Q 011293 148 AFGWG 152 (489)
Q Consensus 148 sLG~~ 152 (489)
.--+.
T Consensus 147 ~aVit 151 (377)
T COG1454 147 FAVIT 151 (377)
T ss_pred eEEEE
Confidence 76665
No 55
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=82.52 E-value=4.5 Score=42.27 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCch-hHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEc
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPD-KALRRIYLNLETLKANGDAYATQIQERLRIIVAG 111 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~-~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~G 111 (489)
++++|+.-+.+-...| ++..+.+.|....+ +.+.. ..|. +.+.++.+.+ ++ .+.+.||++|
T Consensus 26 ~r~lvVt~~~~~~~~g--~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~-~~~D~IIavG 91 (357)
T cd08181 26 KRALIVTGKSSAKKNG--SLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIA-----------KK-FNADFVIGIG 91 (357)
T ss_pred CEEEEEeCCchHhhcC--cHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH-----------Hh-cCCCEEEEeC
Confidence 7888887766543322 34556666654433 33221 2232 2222222221 11 2457888888
Q ss_pred CchHHHHHHHHHhhc--------------cCCCCCcEEEeeC--CCCCchhhhccC
Q 011293 112 GDGTAGWLLGVVCDL--------------KLSHPPPIATVPL--GTGNNLPFAFGW 151 (489)
Q Consensus 112 GDGTv~~vl~~l~~~--------------~~~~~~plgiIP~--GTGNDfArsLG~ 151 (489)
| |++..+...+.-+ .....+|+..||. |||....+.--+
T Consensus 92 G-GSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~~avi 146 (357)
T cd08181 92 G-GSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQYSVL 146 (357)
T ss_pred C-chHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCCeEEE
Confidence 8 7777666543210 0124689999997 888877764443
No 56
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=82.38 E-value=1.4 Score=45.78 Aligned_cols=109 Identities=20% Similarity=0.203 Sum_probs=59.8
Q ss_pred ccceeecCCCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe----EEEEccCch-hHHHHHHHHHH
Q 011293 17 IPSYVLLPDSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV----FDVGEEAPD-KALRRIYLNLE 88 (489)
Q Consensus 17 ~~~~~~~~~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V----~dl~~~~p~-~~l~~l~~~l~ 88 (489)
+|.|++-++.-.. .... ..++++||..+.+- ......+.+.|+...+ |+.....|. +.++++.+.
T Consensus 1 ~~~y~~G~g~~~~l~~~~~~-~~~r~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~-- 73 (345)
T cd08171 1 LPSYSIGEDAYKKIPEVCEK-YGKKVVVIGGKTAL----AAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKN-- 73 (345)
T ss_pred CCCeEeCcCHHHHHHHHHHh-cCCEEEEEeCHHHH----HHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHH--
Confidence 3788887665322 1122 22678888765442 2346677777765443 332222232 222212111
Q ss_pred HhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeC--CCCCchh
Q 011293 89 TLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPL--GTGNNLP 146 (489)
Q Consensus 89 ~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~--GTGNDfA 146 (489)
+++ .+.+.||++|| |++..+...+... ..+|+..||. |||--..
T Consensus 74 ---------~~~-~~~d~iiavGG-Gs~~D~aK~ia~~---~~~p~i~VPTt~gtgse~t 119 (345)
T cd08171 74 ---------PAV-QEADMIFAVGG-GKAIDTVKVLADK---LGKPVFTFPTIASNCAAVT 119 (345)
T ss_pred ---------Hhh-cCCCEEEEeCC-cHHHHHHHHHHHH---cCCCEEEecCccccCcccc
Confidence 111 24578998988 8888888776532 2578999997 5554433
No 57
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=82.16 E-value=4.4 Score=42.65 Aligned_cols=123 Identities=14% Similarity=0.204 Sum_probs=63.9
Q ss_pred cccccceeecC-CCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCch-hHHHHHH
Q 011293 14 EFYIPSYVLLP-DSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPD-KALRRIY 84 (489)
Q Consensus 14 ~~~~~~~~~~~-~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~-~~l~~l~ 84 (489)
.|+.|+.|... +.-.. .......++++|+..+..-. ..++..+++.|....+ +.+.. ..|. +.++++.
T Consensus 2 ~~~~p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~ 78 (377)
T cd08176 2 RFYLPPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVK---IGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGL 78 (377)
T ss_pred cccCCCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhh---cCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHH
Confidence 36788655433 33222 22222336777776544321 2356667777765433 33322 1232 2222222
Q ss_pred HHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhc---------------cCCCCCcEEEeeC--CCCCchhh
Q 011293 85 LNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDL---------------KLSHPPPIATVPL--GTGNNLPF 147 (489)
Q Consensus 85 ~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~---------------~~~~~~plgiIP~--GTGNDfAr 147 (489)
+.+ ++ .+.+.||++|| |++..+...+.-+ .....+|+..||. |||--..+
T Consensus 79 ~~~-----------~~-~~~D~IIavGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~ 145 (377)
T cd08176 79 AVF-----------KK-EGCDFIISIGG-GSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTI 145 (377)
T ss_pred HHH-----------Hh-cCCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCC
Confidence 221 11 24578888888 6776655443210 0124579999997 88887766
Q ss_pred hccCC
Q 011293 148 AFGWG 152 (489)
Q Consensus 148 sLG~~ 152 (489)
.--+.
T Consensus 146 ~avi~ 150 (377)
T cd08176 146 NYVIT 150 (377)
T ss_pred cEEEE
Confidence 55554
No 58
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=80.45 E-value=6.5 Score=41.39 Aligned_cols=124 Identities=12% Similarity=0.117 Sum_probs=62.9
Q ss_pred cccccceeecCCC-CCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCchhHHHHHHH
Q 011293 14 EFYIPSYVLLPDS-ESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPDKALRRIYL 85 (489)
Q Consensus 14 ~~~~~~~~~~~~~-~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~~~l~~l~~ 85 (489)
.|++|+.|..... -.. .......++++|+.-+..- ...++..+++.|....+ +.+.. ..|. ++.+.+
T Consensus 3 ~~~~p~~i~fG~g~l~~l~~~l~~~g~~r~lvvt~~~~~---~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~--~~~v~~ 77 (379)
T TIGR02638 3 RLILNETSYFGAGAIEDIVDEVKRRGFKKALVVTDKDLI---KFGVADKVTDLLDEAGIAYELFDEVKPNPT--ITVVKA 77 (379)
T ss_pred cccCCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchh---hccchHHHHHHHHHCCCeEEEECCCCCCcC--HHHHHH
Confidence 5778866554433 222 2223344688888764321 12256667777765443 33322 2232 121222
Q ss_pred HHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhh---cc--------------CCCCCcEEEeeC--CCCCchh
Q 011293 86 NLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCD---LK--------------LSHPPPIATVPL--GTGNNLP 146 (489)
Q Consensus 86 ~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~---~~--------------~~~~~plgiIP~--GTGNDfA 146 (489)
.++. +++ .+.+.||++|| |++..+...+.- .. ....+|+..||. |||--..
T Consensus 78 ~~~~--------~~~-~~~D~IiaiGG-GSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t 147 (379)
T TIGR02638 78 GVAA--------FKA-SGADYLIAIGG-GSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVT 147 (379)
T ss_pred HHHH--------HHh-cCCCEEEEeCC-hHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhC
Confidence 2211 111 24578888888 666655543321 00 013578999997 7776666
Q ss_pred hhccCC
Q 011293 147 FAFGWG 152 (489)
Q Consensus 147 rsLG~~ 152 (489)
+..-+.
T Consensus 148 ~~avi~ 153 (379)
T TIGR02638 148 INYVIT 153 (379)
T ss_pred CEEEEE
Confidence 554433
No 59
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=79.85 E-value=7.9 Score=40.83 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=54.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCch-hHHHHHHHHHHHhhhccchhhhhhcCCcEEEEE
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPD-KALRRIYLNLETLKANGDAYATQIQERLRIIVA 110 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~-~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~ 110 (489)
.++++|+..+.+-... .+++.+.+.|....+ +.+.. ..|. +.++++.+.+ ++ .+.+.||++
T Consensus 26 ~kr~livtd~~~~~~~--g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~-----------~~-~~~D~IIai 91 (383)
T cd08186 26 ISKVLLVTGKSAYKKS--GAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLG-----------RE-FGAQAVIAI 91 (383)
T ss_pred CCEEEEEcCccHHhhc--ChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHH-----------HH-cCCCEEEEe
Confidence 3678888776654322 345566666654443 32222 2222 2222222221 11 245788989
Q ss_pred cCchHHHHHHHHHhhcc----------------CCCCCcEEEeeC--CCCCchhhhccCC
Q 011293 111 GGDGTAGWLLGVVCDLK----------------LSHPPPIATVPL--GTGNNLPFAFGWG 152 (489)
Q Consensus 111 GGDGTv~~vl~~l~~~~----------------~~~~~plgiIP~--GTGNDfArsLG~~ 152 (489)
|| |++..+...+.-+. ....+|+..||. |||....+.--+.
T Consensus 92 GG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~~avi~ 150 (383)
T cd08186 92 GG-GSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDRFAVAS 150 (383)
T ss_pred CC-ccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCCeEEEE
Confidence 88 66666554432110 013578999997 8988777655443
No 60
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=79.30 E-value=8.1 Score=40.24 Aligned_cols=94 Identities=20% Similarity=0.170 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhcc-CCe--EEEEc--cCc-hhHHHHHHHHHHHhhhccchhhhhhcCCcEEEE
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNK-NQV--FDVGE--EAP-DKALRRIYLNLETLKANGDAYATQIQERLRIIV 109 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~-~~V--~dl~~--~~p-~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv 109 (489)
.++++|+..+..-. .+.+.+.+.|.. ..+ +.+.. ..| .+.++++...+. +. ...+.+.||+
T Consensus 23 ~~k~livtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~---~~------~~~r~d~IIa 89 (344)
T cd08169 23 FDQYFFISDSGVAD----LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAI---AL------GANRRTAIVA 89 (344)
T ss_pred CCeEEEEECccHHH----HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHH---Hc------CCCCCcEEEE
Confidence 36788887754432 356667777754 333 22222 122 222222333221 10 0123567887
Q ss_pred EcCchHHHHHHHHHhhccCCCCCcEEEeeC--CCCCc
Q 011293 110 AGGDGTAGWLLGVVCDLKLSHPPPIATVPL--GTGNN 144 (489)
Q Consensus 110 ~GGDGTv~~vl~~l~~~~~~~~~plgiIP~--GTGND 144 (489)
+|| |++..+...+... ....+|+-.||. ++++|
T Consensus 90 iGG-Gsv~D~ak~vA~~-~~rgip~i~VPTTlla~~d 124 (344)
T cd08169 90 VGG-GATGDVAGFVAST-LFRGIAFIRVPTTLLAQSD 124 (344)
T ss_pred ECC-cHHHHHHHHHHHH-hccCCcEEEecCCcccccc
Confidence 776 8888888776532 124789999998 67777
No 61
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=79.16 E-value=12 Score=38.89 Aligned_cols=92 Identities=17% Similarity=0.082 Sum_probs=54.7
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCc-hhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCc
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAP-DKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGD 113 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p-~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGD 113 (489)
.++++|+..+.+ ...+.+.+++.|....+ +.+..+.| .+.++++...+ ++ .+.+.||++||
T Consensus 23 ~~~~liv~d~~~----~~~~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~-----------~~-~~~D~iIavGG- 85 (347)
T cd08172 23 GKRPLIVTGPRS----WAAAKPYLPESLAAGEAFVLRYDGECSEENIERLAAQA-----------KE-NGADVIIGIGG- 85 (347)
T ss_pred CCeEEEEECHHH----HHHHHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHH-----------Hh-cCCCEEEEeCC-
Confidence 368888887766 23567777777754444 32332223 22222222221 11 24578888887
Q ss_pred hHHHHHHHHHhhccCCCCCcEEEeeC--CCCCchhh
Q 011293 114 GTAGWLLGVVCDLKLSHPPPIATVPL--GTGNNLPF 147 (489)
Q Consensus 114 GTv~~vl~~l~~~~~~~~~plgiIP~--GTGNDfAr 147 (489)
|++..+...+... ..+|+..||. |||-..++
T Consensus 86 Gs~~D~aK~ia~~---~~~p~i~VPTT~gtgse~t~ 118 (347)
T cd08172 86 GKVLDTAKAVADR---LGVPVITVPTLAATCAAWTP 118 (347)
T ss_pred cHHHHHHHHHHHH---hCCCEEEecCccccCcccce
Confidence 8888888777532 2678999996 67666554
No 62
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=78.93 E-value=7.3 Score=41.00 Aligned_cols=102 Identities=17% Similarity=0.109 Sum_probs=55.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcC
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGG 112 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GG 112 (489)
++++|+.-+.+- +...++..+.+.|....+ +.+.. ..|.. +.+.+.++. +++ .+.+.||++||
T Consensus 26 ~r~livt~~~~~--~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~--~~v~~~~~~--------~~~-~~~D~IiavGG 92 (380)
T cd08185 26 KKALIVTGNGSS--KKTGYLDRVIELLKQAGVEVVVFDKVEPNPTT--TTVMEGAAL--------ARE-EGCDFVVGLGG 92 (380)
T ss_pred CeEEEEeCCCch--hhccHHHHHHHHHHHcCCeEEEeCCccCCCCH--HHHHHHHHH--------HHH-cCCCEEEEeCC
Confidence 788989876552 123456677777765443 32221 22321 112222211 121 24578888888
Q ss_pred chHHHHHHHHHhhc-------------------c-CCCCCcEEEeeC--CCCCchhhhccCC
Q 011293 113 DGTAGWLLGVVCDL-------------------K-LSHPPPIATVPL--GTGNNLPFAFGWG 152 (489)
Q Consensus 113 DGTv~~vl~~l~~~-------------------~-~~~~~plgiIP~--GTGNDfArsLG~~ 152 (489)
|++..+...+.-+ . ....+|+..||. |||.-..+.--+.
T Consensus 93 -GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~avi~ 153 (380)
T cd08185 93 -GSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADPWAVIT 153 (380)
T ss_pred -ccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCCeEEEE
Confidence 6666655443211 0 113578999995 8888777755554
No 63
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=78.83 E-value=7.9 Score=40.41 Aligned_cols=99 Identities=20% Similarity=0.167 Sum_probs=52.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCCeEEEE--ccCch-hHHHHHHHHHHHhhhccchhhhhh-cCCcEEEEEcC
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQVFDVG--EEAPD-KALRRIYLNLETLKANGDAYATQI-QERLRIIVAGG 112 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V~dl~--~~~p~-~~l~~l~~~l~~l~~~~~~~a~~~-~~~~~IIv~GG 112 (489)
++++|+..+.. ....++..+...|....++... +..|. +.++++.+.+ ++. .+.+.||++||
T Consensus 24 ~r~lvVtd~~~---~~~g~~~~v~~~L~~~~~~~~~~v~~~pt~~~v~~~~~~~-----------~~~~~~~D~IIaiGG 89 (355)
T TIGR03405 24 RRVVVVTFPEA---RALGLARRLEALLGGRLAALIDDVAPNPDVAQLDGLYARL-----------WGDEGACDLVIALGG 89 (355)
T ss_pred CeEEEEECcch---hhcchHHHHHHHhccCcEEEeCCCCCCcCHHHHHHHHHHH-----------HhcCCCCCEEEEeCC
Confidence 78888876533 2224566777777544332221 12332 2222222221 111 12578888888
Q ss_pred chHHHHHHHHHhhc---------------c----CCCCCcEEEeeC--CCCCchhhhcc
Q 011293 113 DGTAGWLLGVVCDL---------------K----LSHPPPIATVPL--GTGNNLPFAFG 150 (489)
Q Consensus 113 DGTv~~vl~~l~~~---------------~----~~~~~plgiIP~--GTGNDfArsLG 150 (489)
|++..+...+.-+ . ....+|+..||. |||-...+.--
T Consensus 90 -GSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~~av 147 (355)
T TIGR03405 90 -GSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTPWAT 147 (355)
T ss_pred -ccHHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcCeEE
Confidence 6766655443211 0 113578999996 88877666543
No 64
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=78.62 E-value=8.3 Score=35.52 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=43.3
Q ss_pred CCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhc
Q 011293 48 GGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDL 126 (489)
Q Consensus 48 G~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~ 126 (489)
|+..-....++.+..|...++ |++..-..+...+++.+-++++.. ..-...|.++|+++-|--|+.++.
T Consensus 8 gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~--------~~~~viIa~AG~~a~Lpgvva~~t-- 77 (150)
T PF00731_consen 8 GSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEA--------RGADVIIAVAGMSAALPGVVASLT-- 77 (150)
T ss_dssp SSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTT--------TTESEEEEEEESS--HHHHHHHHS--
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhcc--------CCCEEEEEECCCcccchhhheecc--
Confidence 433445677888888888777 877652222222222222221110 011356779999999999998876
Q ss_pred cCCCCCcEEEeeCCCC
Q 011293 127 KLSHPPPIATVPLGTG 142 (489)
Q Consensus 127 ~~~~~~plgiIP~GTG 142 (489)
..|.||+ |.-++
T Consensus 78 ---~~PVIgv-P~~~~ 89 (150)
T PF00731_consen 78 ---TLPVIGV-PVSSG 89 (150)
T ss_dssp ---SS-EEEE-EE-ST
T ss_pred ---CCCEEEe-ecCcc
Confidence 3566776 77654
No 65
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=78.01 E-value=8.7 Score=40.83 Aligned_cols=125 Identities=16% Similarity=0.127 Sum_probs=62.7
Q ss_pred ccccccceeecC-CCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCchhHHHHHH
Q 011293 13 KEFYIPSYVLLP-DSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPDKALRRIY 84 (489)
Q Consensus 13 ~~~~~~~~~~~~-~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~~~l~~l~ 84 (489)
..|+.|+.|... ++-.. .......++++|+.-+. -....++..+.+.|....+ +.+.. ..|.. +.+.
T Consensus 22 ~~f~~P~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~~~---~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~--~~v~ 96 (395)
T PRK15454 22 KTFSVPPVTLCGPGAVSSCGQQAQTRGLKHLFVMADSF---LHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCI--TDVC 96 (395)
T ss_pred ceeecCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcc---hhhCccHHHHHHHHHHcCCeEEEECCCCCCcCH--HHHH
Confidence 468899766544 33222 22233335555553211 1223456778888876554 33332 23322 1122
Q ss_pred HHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHH---hhcc------------CCCCCcEEEeeC--CCCCchhh
Q 011293 85 LNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVV---CDLK------------LSHPPPIATVPL--GTGNNLPF 147 (489)
Q Consensus 85 ~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l---~~~~------------~~~~~plgiIP~--GTGNDfAr 147 (489)
+.++ ++++ .+.+.||++|| |++..+...+ .... ....+|+..||. |||-...+
T Consensus 97 ~~~~--------~~r~-~~~D~IiavGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~ 166 (395)
T PRK15454 97 AAVA--------QLRE-SGCDGVIAFGG-GSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTN 166 (395)
T ss_pred HHHH--------HHHh-cCcCEEEEeCC-hHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCCcchhhhCC
Confidence 2221 1222 35678999998 4544444332 1100 013578999996 88887776
Q ss_pred hccCC
Q 011293 148 AFGWG 152 (489)
Q Consensus 148 sLG~~ 152 (489)
.--+.
T Consensus 167 ~avi~ 171 (395)
T PRK15454 167 VTVII 171 (395)
T ss_pred eEEEE
Confidence 55554
No 66
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=77.26 E-value=11 Score=38.67 Aligned_cols=88 Identities=25% Similarity=0.216 Sum_probs=48.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccC-Ce--EEEEccCc-hhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcC
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKN-QV--FDVGEEAP-DKALRRIYLNLETLKANGDAYATQIQERLRIIVAGG 112 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~-~V--~dl~~~~p-~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GG 112 (489)
++++|+..+..-. .+...+.+.|... .+ |+.....| .+.++++...+ ++ .+.+.||++||
T Consensus 24 ~~~liv~~~~~~~----~~~~~v~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~-----------~~-~~~d~IIaiGG 87 (332)
T cd07766 24 DRALVVSDEGVVK----GVGEKVADSLKKLIAVHIFDGVGPNPTFEEVKEAVERA-----------RA-AEVDAVIAVGG 87 (332)
T ss_pred CeEEEEeCCchhh----hHHHHHHHHHHhcCcEEEeCCcCCCcCHHHHHHHHHHH-----------Hh-cCcCEEEEeCC
Confidence 6788887655533 4555666666542 22 33221212 22222232222 11 24577888876
Q ss_pred chHHHHHHHHHhhccCCCCCcEEEeeC--CCC
Q 011293 113 DGTAGWLLGVVCDLKLSHPPPIATVPL--GTG 142 (489)
Q Consensus 113 DGTv~~vl~~l~~~~~~~~~plgiIP~--GTG 142 (489)
|++..+...+... ....+|+..||. |||
T Consensus 88 -Gs~~D~aK~ia~~-~~~~~p~i~iPTt~~tg 117 (332)
T cd07766 88 -GSTLDTAKAVAAL-LNRGLPIIIVPTTAATG 117 (332)
T ss_pred -chHHHHHHHHHHH-hcCCCCEEEEeCCCchh
Confidence 8888888766432 124789999997 555
No 67
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=76.38 E-value=9.9 Score=39.99 Aligned_cols=125 Identities=15% Similarity=0.171 Sum_probs=62.6
Q ss_pred cccccccceeecCCCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCchhHHHHHH
Q 011293 12 LKEFYIPSYVLLPDSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPDKALRRIY 84 (489)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~~~l~~l~ 84 (489)
|+.|.-|.+++-+++-.+ .......++++|+.-+.. ....+++.+.+.|....+ +.+.. ..|.. +.+.
T Consensus 1 ~~~~~~~~i~~G~g~l~~l~~~l~~~g~~~~livt~~~~---~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~--~~v~ 75 (377)
T cd08188 1 LRKFVAPEIIFGRGALKLAGRYARRLGAKKVLLVSDPGV---IKAGWVDRVIESLEEAGLEYVVFSDVSPNPRD--EEVM 75 (377)
T ss_pred CCCccCCceEECcCHHHHHHHHHHHcCCCeEEEEeCcch---hhCccHHHHHHHHHHcCCeEEEeCCCCCCCCH--HHHH
Confidence 355666677776554322 222333467887765322 112245666777765433 22221 23322 1122
Q ss_pred HHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHH---hhc--------c---C-CCCCcEEEeeC--CCCCchhh
Q 011293 85 LNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVV---CDL--------K---L-SHPPPIATVPL--GTGNNLPF 147 (489)
Q Consensus 85 ~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l---~~~--------~---~-~~~~plgiIP~--GTGNDfAr 147 (489)
+.++. +++ .+.+.||++|| |++..+...+ ... . . ...+|+..||. |||--.++
T Consensus 76 ~~~~~--------~~~-~~~d~IIaiGG-GsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~ 145 (377)
T cd08188 76 AGAEL--------YLE-NGCDVIIAVGG-GSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQ 145 (377)
T ss_pred HHHHH--------HHh-cCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 32221 111 34678888888 6666555332 110 0 0 12468999997 88876666
Q ss_pred hccC
Q 011293 148 AFGW 151 (489)
Q Consensus 148 sLG~ 151 (489)
.--+
T Consensus 146 ~avi 149 (377)
T cd08188 146 FAII 149 (377)
T ss_pred eEEE
Confidence 4433
No 68
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=76.04 E-value=15 Score=38.59 Aligned_cols=96 Identities=19% Similarity=0.155 Sum_probs=52.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCCe----EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcC
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV----FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGG 112 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V----~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GG 112 (489)
++++|+.-+.+. .++.+...|....+ |++. ..|.. +.+.+.++. +++ .+.+.||++||
T Consensus 23 ~r~livtd~~~~------~~~~v~~~L~~~g~~~~~~~~~-~~p~~--~~v~~~~~~--------~~~-~~~D~IIaiGG 84 (374)
T cd08183 23 RRVLLVTGASSL------RAAWLIEALRAAGIEVTHVVVA-GEPSV--ELVDAAVAE--------ARN-AGCDVVIAIGG 84 (374)
T ss_pred CcEEEEECCchH------HHHHHHHHHHHcCCeEEEecCC-CCcCH--HHHHHHHHH--------HHh-cCCCEEEEecC
Confidence 688888776553 56667777765433 3322 23321 212222221 111 34678998888
Q ss_pred chHHHHHHHHHhhc------------c-------CCCCCcEEEeeC--CCCCchhhhccC
Q 011293 113 DGTAGWLLGVVCDL------------K-------LSHPPPIATVPL--GTGNNLPFAFGW 151 (489)
Q Consensus 113 DGTv~~vl~~l~~~------------~-------~~~~~plgiIP~--GTGNDfArsLG~ 151 (489)
|++..+...+.-+ . ....+|+..||. |||.-..+.--+
T Consensus 85 -GS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t~~avi 143 (374)
T cd08183 85 -GSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVTKNAVI 143 (374)
T ss_pred -chHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhCCeEEE
Confidence 6766665443211 0 013578999995 677665554433
No 69
>PRK15138 aldehyde reductase; Provisional
Probab=75.60 E-value=12 Score=39.75 Aligned_cols=122 Identities=16% Similarity=0.174 Sum_probs=60.6
Q ss_pred cccccceeecCCC-CCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe--EEEEccCch-hHHHHHHHH
Q 011293 14 EFYIPSYVLLPDS-ESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV--FDVGEEAPD-KALRRIYLN 86 (489)
Q Consensus 14 ~~~~~~~~~~~~~-~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V--~dl~~~~p~-~~l~~l~~~ 86 (489)
.|..|+.|..... -.+ .+.. .++++|+.-+.+= +...++..+.+.|....+ |+-....|. +.++++.+.
T Consensus 5 ~~~~P~~i~~G~g~~~~l~~~l~~--~~~~livt~~~~~--~~~g~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~~~~ 80 (387)
T PRK15138 5 NLHTPTRILFGKGAIAGLREQIPA--DARVLITYGGGSV--KKTGVLDQVLDALKGMDVLEFGGIEPNPTYETLMKAVKL 80 (387)
T ss_pred EEeCCceEEECcCHHHHHHHHHhc--CCeEEEECCCchH--HhcCcHHHHHHHhcCCeEEEECCccCCCCHHHHHHHHHH
Confidence 5678866654433 222 2222 2677777543332 223456677777764333 321112232 222222221
Q ss_pred HHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhc------------------cCCCCCcEEEeeC--CCCCchh
Q 011293 87 LETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDL------------------KLSHPPPIATVPL--GTGNNLP 146 (489)
Q Consensus 87 l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~------------------~~~~~~plgiIP~--GTGNDfA 146 (489)
+++ .+.+.||++|| |++..+...+.-+ .....+|+..||. |||-...
T Consensus 81 -----------~~~-~~~D~IIaiGG-GS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t 147 (387)
T PRK15138 81 -----------VRE-EKITFLLAVGG-GSVLDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESN 147 (387)
T ss_pred -----------HHH-cCCCEEEEeCC-hHHHHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccC
Confidence 111 35688999998 4554444332100 0113468999997 8888766
Q ss_pred hhccCC
Q 011293 147 FAFGWG 152 (489)
Q Consensus 147 rsLG~~ 152 (489)
..--+.
T Consensus 148 ~~avit 153 (387)
T PRK15138 148 AGAVIS 153 (387)
T ss_pred CCEEEE
Confidence 655443
No 70
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=75.59 E-value=17 Score=38.19 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEc
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAG 111 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~G 111 (489)
.++++|+..+.+- . ..+++.+.+.|....+ +.+.. ..|.. +.+.+.++. +++ .+.+.||++|
T Consensus 23 ~~r~livt~~~~~-~--~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~--~~v~~~~~~--------~~~-~~~D~IIaiG 88 (375)
T cd08194 23 GKRPLIVTDKVMV-K--LGLVDKLTDSLKKEGIESAIFDDVVSEPTD--ESVEEGVKL--------AKE-GGCDVIIALG 88 (375)
T ss_pred CCeEEEEcCcchh-h--cchHHHHHHHHHHCCCeEEEECCCCCCcCH--HHHHHHHHH--------HHh-cCCCEEEEeC
Confidence 3678888765543 1 2256667777765443 33221 23321 212222221 111 3457888888
Q ss_pred CchHHHHHHHHHhhc--------------c-CCCCCcEEEeeC--CCCCchhhh
Q 011293 112 GDGTAGWLLGVVCDL--------------K-LSHPPPIATVPL--GTGNNLPFA 148 (489)
Q Consensus 112 GDGTv~~vl~~l~~~--------------~-~~~~~plgiIP~--GTGNDfArs 148 (489)
| |++..+...+.-+ . ....+|+..||. |||--..+.
T Consensus 89 G-GS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagtGsE~t~~ 141 (375)
T cd08194 89 G-GSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAGTGSEVTRF 141 (375)
T ss_pred C-chHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCCccccccCCe
Confidence 8 6777666544210 0 123578999996 666655443
No 71
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=74.21 E-value=10 Score=39.35 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=49.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCC--e--EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEc
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQ--V--FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAG 111 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~--V--~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~G 111 (489)
.++++|+..+..-. .+.+.+.+.|.... + +.+....+...++.+.+.++.+++. ...+.+.||++|
T Consensus 24 ~~~~livtd~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~------~~~r~d~IIaiG 93 (345)
T cd08195 24 GSKILIVTDENVAP----LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEA------GLDRKSLIIALG 93 (345)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHc------CCCCCCeEEEEC
Confidence 36788888766642 35667777776532 2 3332211221122222222222111 112346788887
Q ss_pred CchHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 112 GDGTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 112 GDGTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
| |++..+...+... ....+|+..||.
T Consensus 94 G-Gsv~D~ak~vA~~-~~rgip~i~VPT 119 (345)
T cd08195 94 G-GVVGDLAGFVAAT-YMRGIDFIQIPT 119 (345)
T ss_pred C-hHHHhHHHHHHHH-HhcCCCeEEcch
Confidence 7 8888888766531 124688999996
No 72
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=73.39 E-value=13 Score=38.83 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=51.8
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EE---EEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEE
Q 011293 35 PRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FD---VGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVA 110 (489)
Q Consensus 35 ~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~d---l~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~ 110 (489)
..++++|+..+... ..+.+.+.+.|....+ +. +....+...++.+.+.++.+++. ...+.+.||++
T Consensus 30 ~~~~~livtd~~~~----~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~------~~~r~d~IIav 99 (358)
T PRK00002 30 KGKKVAIVTDETVA----PLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEA------GLDRSDTLIAL 99 (358)
T ss_pred CCCeEEEEECCchH----HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHc------CCCCCCEEEEE
Confidence 44688888875552 2367777777765433 22 22211111122122222211110 11234678888
Q ss_pred cCchHHHHHHHHHhhccCCCCCcEEEeeC--CCCCc
Q 011293 111 GGDGTAGWLLGVVCDLKLSHPPPIATVPL--GTGNN 144 (489)
Q Consensus 111 GGDGTv~~vl~~l~~~~~~~~~plgiIP~--GTGND 144 (489)
|| |++..+...+... ....+|+..||. ++.+|
T Consensus 100 GG-Gsv~D~aK~iA~~-~~~gip~i~IPTT~~s~~d 133 (358)
T PRK00002 100 GG-GVIGDLAGFAAAT-YMRGIRFIQVPTTLLAQVD 133 (358)
T ss_pred cC-cHHHHHHHHHHHH-hcCCCCEEEcCchhhhccc
Confidence 77 8888888776521 124789999997 44444
No 73
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=72.56 E-value=15 Score=37.94 Aligned_cols=89 Identities=18% Similarity=0.107 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCC-eEEEEccCc-hhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCc
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQ-VFDVGEEAP-DKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGD 113 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~-V~dl~~~~p-~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGD 113 (489)
.++++|+..+.... .+.+.+.+.|.... +.......| .+.++++.+.+. + .+.+.||++||
T Consensus 25 ~~~~liv~d~~~~~----~~~~~v~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~-~~~d~iIaiGG- 87 (339)
T cd08173 25 GGRVLVVTGPTTKS----IAGKKVEALLEDEGEVDVVIVEDATYEEVEKVESSAR-----------D-IGADFVIGVGG- 87 (339)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhh-----------h-cCCCEEEEeCC-
Confidence 36788888765532 46667777775432 311122222 222222332221 1 24578888887
Q ss_pred hHHHHHHHHHhhccCCCCCcEEEeeCCCCCc
Q 011293 114 GTAGWLLGVVCDLKLSHPPPIATVPLGTGNN 144 (489)
Q Consensus 114 GTv~~vl~~l~~~~~~~~~plgiIP~GTGND 144 (489)
|++..+...+.- ...+|+..||.=.++|
T Consensus 88 Gs~~D~aK~~a~---~~~~p~i~iPTT~~t~ 115 (339)
T cd08173 88 GRVIDVAKVAAY---KLGIPFISVPTAASHD 115 (339)
T ss_pred chHHHHHHHHHH---hcCCCEEEecCcccCC
Confidence 898888877752 2468999999755443
No 74
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=71.06 E-value=18 Score=37.86 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=52.6
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEE---ccCch-hHHHHHHHHHHHhhhccchhhhhhcCCcEEEE
Q 011293 35 PRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVG---EEAPD-KALRRIYLNLETLKANGDAYATQIQERLRIIV 109 (489)
Q Consensus 35 ~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~---~~~p~-~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv 109 (489)
..++++|+.-+.+-. ..++..+.+.|....+ +.+. ...|. +.+.++.+.+ ++ .+.+.||+
T Consensus 22 ~~~~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~-----------~~-~~~d~Iia 86 (370)
T cd08551 22 GGRKALIVTDPGLVK---TGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAY-----------RE-EGCDGVIA 86 (370)
T ss_pred CCCeEEEEeCcchhh---CccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHH-----------Hh-cCCCEEEE
Confidence 346788887766543 2345556666654333 2222 12232 2222222221 11 24578888
Q ss_pred EcCchHHHHHHHHHhhcc---------------CCCCCcEEEeeC--CCCCchhhhccC
Q 011293 110 AGGDGTAGWLLGVVCDLK---------------LSHPPPIATVPL--GTGNNLPFAFGW 151 (489)
Q Consensus 110 ~GGDGTv~~vl~~l~~~~---------------~~~~~plgiIP~--GTGNDfArsLG~ 151 (489)
+|| |++..+...+.-+. ....+|+..||. |||--..+...+
T Consensus 87 iGG-Gs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~t~~avi 144 (370)
T cd08551 87 VGG-GSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEVTPFAVI 144 (370)
T ss_pred eCC-chHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhcCCeEEE
Confidence 888 66666665442110 013678999997 677555554444
No 75
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=70.38 E-value=22 Score=37.29 Aligned_cols=102 Identities=19% Similarity=0.195 Sum_probs=51.8
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEE
Q 011293 35 PRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVA 110 (489)
Q Consensus 35 ~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~ 110 (489)
..++++|+..+..-. ..++..+.+.|....+ +.+.. ..|.. +.+.+.++. +++ .+.+.||++
T Consensus 25 g~~~~lvvt~~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~--~~v~~~~~~--------~~~-~~~d~IIai 90 (374)
T cd08189 25 GVKKVLIVTDKGLVK---LGLLDKVLEALEGAGIEYAVYDGVPPDPTI--ENVEAGLAL--------YRE-NGCDAILAV 90 (374)
T ss_pred CCCeEEEEeCcchhh---cccHHHHHHHHHhcCCeEEEeCCCCCCcCH--HHHHHHHHH--------HHh-cCCCEEEEe
Confidence 346888887654321 2245667777765443 33222 22321 112222221 111 245788888
Q ss_pred cCchHHHHHHHHHhhccC----------------CCCCcEEEeeC--CCCCchhhhccC
Q 011293 111 GGDGTAGWLLGVVCDLKL----------------SHPPPIATVPL--GTGNNLPFAFGW 151 (489)
Q Consensus 111 GGDGTv~~vl~~l~~~~~----------------~~~~plgiIP~--GTGNDfArsLG~ 151 (489)
|| |++..+...+.-+.. ...+|+..||. |||-...+.--+
T Consensus 91 GG-GS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~t~~avi 148 (374)
T cd08189 91 GG-GSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEVTIAAVI 148 (374)
T ss_pred CC-ccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccccCCeEEE
Confidence 88 666665544321100 12368999986 777766554443
No 76
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=70.08 E-value=19 Score=37.31 Aligned_cols=96 Identities=18% Similarity=0.069 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCCe---EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCc
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV---FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGD 113 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V---~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGD 113 (489)
++++|+.-+.+ ...++..+.+.|....+ |+.....|.. +.+.+.++. +++ .+.+.||++||
T Consensus 23 ~r~livt~~~~----~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~--~~v~~~~~~--------~~~-~~~D~IIavGG- 86 (351)
T cd08170 23 KRALIIADEFV----LDLVGAKIEESLAAAGIDARFEVFGGECTR--AEIERLAEI--------ARD-NGADVVIGIGG- 86 (351)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHHhCCCeEEEEEeCCcCCH--HHHHHHHHH--------Hhh-cCCCEEEEecC-
Confidence 67777763322 22567778888876543 3322233322 112222211 111 34578999998
Q ss_pred hHHHHHHHHHhhccCCCCCcEEEeeC--CCCCchhhhccC
Q 011293 114 GTAGWLLGVVCDLKLSHPPPIATVPL--GTGNNLPFAFGW 151 (489)
Q Consensus 114 GTv~~vl~~l~~~~~~~~~plgiIP~--GTGNDfArsLG~ 151 (489)
|++..+...+.-+ ..+|+..||. |||--....-.+
T Consensus 87 GS~iD~aK~ia~~---~~~P~iaIPTTagTgse~t~~avi 123 (351)
T cd08170 87 GKTLDTAKAVADY---LGAPVVIVPTIASTDAPTSALSVI 123 (351)
T ss_pred chhhHHHHHHHHH---cCCCEEEeCCccccCcccccceEE
Confidence 7777777666432 3688999997 777665554443
No 77
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=68.78 E-value=13 Score=38.61 Aligned_cols=91 Identities=22% Similarity=0.133 Sum_probs=51.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EE--EEccCch-hHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcC
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FD--VGEEAPD-KALRRIYLNLETLKANGDAYATQIQERLRIIVAGG 112 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~d--l~~~~p~-~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GG 112 (489)
++++|+..+.+-. ...+.+.+.|....+ +. +....|. +.+.++.+.+ ++ .+.+.||++||
T Consensus 23 ~~~liv~~~~~~~----~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~-----------~~-~~~d~IIavGG 86 (349)
T cd08550 23 SKVAVVGGKTVLK----KSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGA-----------EE-QEADVIIGVGG 86 (349)
T ss_pred CeEEEEEChHHHH----HHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHH-----------Hh-cCCCEEEEecC
Confidence 5677777655432 345677777765443 22 2222222 2222222221 11 24578888887
Q ss_pred chHHHHHHHHHhhccCCCCCcEEEeeC--CCCCchhh
Q 011293 113 DGTAGWLLGVVCDLKLSHPPPIATVPL--GTGNNLPF 147 (489)
Q Consensus 113 DGTv~~vl~~l~~~~~~~~~plgiIP~--GTGNDfAr 147 (489)
|++..+...+... ..+|+..||. |||-...+
T Consensus 87 -Gs~~D~aK~ia~~---~~~p~i~VPTtagtgse~t~ 119 (349)
T cd08550 87 -GKTLDTAKAVADR---LDKPIVIVPTIASTCAASSN 119 (349)
T ss_pred -cHHHHHHHHHHHH---cCCCEEEeCCccccCccccc
Confidence 8888888776532 3678999997 66655444
No 78
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=68.19 E-value=19 Score=37.27 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCCe----EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcC
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV----FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGG 112 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V----~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GG 112 (489)
++++|+..+..- ..+.+.+.+.|....+ +.+....+..-++.+.+.++.+++. ...+.+.||++||
T Consensus 21 ~~~livtd~~~~----~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~------~~~r~d~IIavGG 90 (344)
T TIGR01357 21 SKLVIITDETVA----DLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEA------GLDRSSTIIALGG 90 (344)
T ss_pred CeEEEEECCchH----HHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHc------CCCCCCEEEEEcC
Confidence 678888865542 2356677777765432 2222211111112122222221110 1122467888887
Q ss_pred chHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 113 DGTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 113 DGTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
|++..+...+... ....+|+..||.
T Consensus 91 -Gsv~D~aK~iA~~-~~~~~p~i~VPT 115 (344)
T TIGR01357 91 -GVVGDLAGFVAAT-YMRGIRFIQVPT 115 (344)
T ss_pred -hHHHHHHHHHHHH-HccCCCEEEecC
Confidence 7888877766421 125689999997
No 79
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=67.78 E-value=13 Score=38.87 Aligned_cols=118 Identities=18% Similarity=0.106 Sum_probs=64.0
Q ss_pred ccccccceee-cCCCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe---EEEEccCc-hhHHHHHH
Q 011293 13 KEFYIPSYVL-LPDSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV---FDVGEEAP-DKALRRIY 84 (489)
Q Consensus 13 ~~~~~~~~~~-~~~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V---~dl~~~~p-~~~l~~l~ 84 (489)
..|++|+.+. -++.-.. ...... ++++||.-+.+- ..+.+.+.+.|....+ |+.....| ...++++.
T Consensus 3 ~~f~~p~~i~~G~g~~~~l~~~l~~~g-~~~livtd~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~ 77 (366)
T PRK09423 3 RIFISPSKYVQGKGALARLGEYLKPLG-KRALVIADEFVL----GIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLV 77 (366)
T ss_pred ccccCCceEEECCCHHHHHHHHHHHcC-CEEEEEEChhHH----HHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHH
Confidence 4577885544 4433222 222223 678888754432 2366777777765432 43332223 22222222
Q ss_pred HHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeC--CCCCchhhhccC
Q 011293 85 LNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPL--GTGNNLPFAFGW 151 (489)
Q Consensus 85 ~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~--GTGNDfArsLG~ 151 (489)
..+ ++ .+.+.||++|| |++..+...+.-+ ..+|+..||. |||--....-.+
T Consensus 78 ~~~-----------~~-~~~d~IIavGG-Gsv~D~aK~iA~~---~~~p~i~IPTtagtgSe~t~~avi 130 (366)
T PRK09423 78 AIA-----------EE-NGCDVVIGIGG-GKTLDTAKAVADY---LGVPVVIVPTIASTDAPTSALSVI 130 (366)
T ss_pred HHH-----------Hh-cCCCEEEEecC-hHHHHHHHHHHHH---cCCCEEEeCCccccCccccCceEE
Confidence 211 11 24578999988 7888877766531 3688999997 555554443333
No 80
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=67.37 E-value=2.9 Score=43.00 Aligned_cols=62 Identities=24% Similarity=0.247 Sum_probs=36.4
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEe--eCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCce
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATV--PLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKE 175 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiI--P~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~ 175 (489)
..+.||-+|||||+--...-+.+ .+.|.||+= |.|+--- +-++.++|. +...+|..+..|.-
T Consensus 105 waD~VisvGGDGTfL~Aasrv~~---~~~PViGvNtDP~~Seg~----lcL~~~~~~----n~~~al~k~~sgnF 168 (395)
T KOG4180|consen 105 WADMVISVGGDGTFLLAASRVID---DSKPVIGVNTDPTGSEGH----LCLPDKYPS----NPAGALCKLTSGNF 168 (395)
T ss_pred hhhEEEEecCccceeehhhhhhc---cCCceeeecCCCCcCcce----EeccccCCC----CcHHHHHHHHhccH
Confidence 35789999999998666653332 356667764 5554332 335555443 34445555555553
No 81
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=66.84 E-value=20 Score=37.81 Aligned_cols=124 Identities=11% Similarity=0.176 Sum_probs=62.5
Q ss_pred cccccceeecCCCC-Cc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCchhHHHHHHH
Q 011293 14 EFYIPSYVLLPDSE-SE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPDKALRRIYL 85 (489)
Q Consensus 14 ~~~~~~~~~~~~~~-~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~~~l~~l~~ 85 (489)
.|+.|+.+...... .. .......++++|+.-+..- ...+++.+...|....+ +.+.. ..|. .+.+.+
T Consensus 4 ~~~~~~~i~~G~g~l~~l~~~~~~~g~~~~lvvtd~~~~---~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~--~~~v~~ 78 (382)
T PRK10624 4 RMILNETAYFGRGAIGALTDEVKRRGFKKALIVTDKTLV---KCGVVAKVTDVLDAAGLAYEIYDGVKPNPT--IEVVKE 78 (382)
T ss_pred cccCCCeEEECcCHHHHHHHHHHhcCCCEEEEEeCcchh---hCcchHHHHHHHHHCCCeEEEeCCCCCCcC--HHHHHH
Confidence 46777666543222 21 2223344688888764322 12256667777765433 33221 2332 121222
Q ss_pred HHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHh---hc--------------cCCCCCcEEEeeC--CCCCchh
Q 011293 86 NLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVC---DL--------------KLSHPPPIATVPL--GTGNNLP 146 (489)
Q Consensus 86 ~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~---~~--------------~~~~~~plgiIP~--GTGNDfA 146 (489)
.++. +++ .+.+.||++|| |++..+...+. .. .....+|+..||. |||--..
T Consensus 79 ~~~~--------~~~-~~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t 148 (382)
T PRK10624 79 GVEV--------FKA-SGADYLIAIGG-GSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVT 148 (382)
T ss_pred HHHH--------HHh-cCCCEEEEeCC-hHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhc
Confidence 2221 111 24578888888 66666654332 10 0113578999996 7877766
Q ss_pred hhccCC
Q 011293 147 FAFGWG 152 (489)
Q Consensus 147 rsLG~~ 152 (489)
+..-+.
T Consensus 149 ~~avi~ 154 (382)
T PRK10624 149 INYVIT 154 (382)
T ss_pred ceeeee
Confidence 655544
No 82
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=66.14 E-value=28 Score=36.45 Aligned_cols=98 Identities=19% Similarity=0.206 Sum_probs=49.0
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEE---ccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEE
Q 011293 35 PRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVG---EEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVA 110 (489)
Q Consensus 35 ~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~---~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~ 110 (489)
..++++|+..+..- ...+++.+.+.|....+ +.+. ...|.. +.+.+.++. +++ .+.+.||++
T Consensus 23 g~~~~liv~~~~~~---~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~--~~v~~~~~~--------~~~-~~~d~IIai 88 (370)
T cd08192 23 GIKRPLIVTDPGLA---ALGLVARVLALLEDAGLAAALFDEVPPNPTE--AAVEAGLAA--------YRA-GGCDGVIAF 88 (370)
T ss_pred CCCeEEEEcCcchh---hCccHHHHHHHHHHcCCeEEEeCCCCCCCCH--HHHHHHHHH--------HHh-cCCCEEEEe
Confidence 33577777654431 12245667777765332 2222 122322 112222221 111 345788888
Q ss_pred cCchHHHHHHHHHhhcc-------------------CCCCCcEEEeeC--CCCCchhh
Q 011293 111 GGDGTAGWLLGVVCDLK-------------------LSHPPPIATVPL--GTGNNLPF 147 (489)
Q Consensus 111 GGDGTv~~vl~~l~~~~-------------------~~~~~plgiIP~--GTGNDfAr 147 (489)
|| |++..+...+.-+. ....+|+..||. |||--..+
T Consensus 89 GG-GSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t~ 145 (370)
T cd08192 89 GG-GSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTGSEVGR 145 (370)
T ss_pred CC-chHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchhhhhCC
Confidence 88 67776665442110 012478888886 66655444
No 83
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=64.13 E-value=39 Score=35.25 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=27.3
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcc-------------------CCCCCcEEEeeC--CCCCchhhh
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLK-------------------LSHPPPIATVPL--GTGNNLPFA 148 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~-------------------~~~~~plgiIP~--GTGNDfArs 148 (489)
+.+.||++|| |++..+...+.-+. ....+|+..||. |||--.+..
T Consensus 77 ~~D~IIavGG-Gs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t~~ 142 (367)
T cd08182 77 GPDAVLAVGG-GSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEVTPF 142 (367)
T ss_pred CcCEEEEeCC-cHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchhhhCCE
Confidence 4578888887 67766665443210 114578999997 566554443
No 84
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=63.84 E-value=20 Score=39.02 Aligned_cols=57 Identities=25% Similarity=0.347 Sum_probs=39.3
Q ss_pred cEEEEEcCchHHHHHHH---HHhhccCCCCCcEEEeeCCCCCchh---hhccCCCCCCCCChHHHHHHHHHHH
Q 011293 105 LRIIVAGGDGTAGWLLG---VVCDLKLSHPPPIATVPLGTGNNLP---FAFGWGKKNPGTDRHAVEQFLRHVM 171 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl~---~l~~~~~~~~~plgiIP~GTGNDfA---rsLG~~~~~~~~~~~~l~~~l~~i~ 171 (489)
..++++|||||+.-+.. .+.+. ..++++--||-==-||+. +++|..+ +++.+.+.|.
T Consensus 178 ~~L~vIGGdgT~~~A~~L~ee~~~~--g~~I~VIGIPKTIDNDI~~td~S~GFdT--------Av~~~~~aI~ 240 (459)
T PTZ00286 178 NILFTLGGDGTHRGALAIYKELRRR--KLNISVVGIPKTIDNDIPIIDESFGFQT--------AVEEAQNAIR 240 (459)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHh--CCCceEEEeccccCCCCCCcccCcCchH--------HHHHHHHHHH
Confidence 57999999999875443 33322 246889999999999987 5666663 5555555443
No 85
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=63.55 E-value=29 Score=36.17 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=59.3
Q ss_pred ccccccceeecCCCC-Cc---ccCCCC-CCcEEEEEcCCCCCCChhhHHHHHHHHhccC-CeEEEEccCc-hhHHHHHHH
Q 011293 13 KEFYIPSYVLLPDSE-SE---TVPDVP-RCPVLVFINSKSGGQLGGDLLVTYRSLLNKN-QVFDVGEEAP-DKALRRIYL 85 (489)
Q Consensus 13 ~~~~~~~~~~~~~~~-~~---~~~~~~-~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~-~V~dl~~~~p-~~~l~~l~~ 85 (489)
+.|..|..+.....- .+ ...... .++++||..+.+... ..+.+++.|... .++......+ .+.++++..
T Consensus 6 ~~~~~p~~i~~G~g~l~~l~~~l~~~~~~~~~livtd~~~~~~----~~~~l~~~l~~~~~~~~~~~~~~t~~~v~~~~~ 81 (350)
T PRK00843 6 HWIQLPRDVVVGHGVLDDIGDVCSDLKLTGRALIVTGPTTKKI----AGDRVEENLEDAGDVEVVIVDEATMEEVEKVEE 81 (350)
T ss_pred eEEeCCCeEEECCCHHHHHHHHHHHhCCCCeEEEEECCcHHHH----HHHHHHHHHHhcCCeeEEeCCCCCHHHHHHHHH
Confidence 456788666544332 21 111112 368888988776432 334555555432 2322222222 222222322
Q ss_pred HHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCc
Q 011293 86 NLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNN 144 (489)
Q Consensus 86 ~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGND 144 (489)
.+. + .+.+.||++|| |++..+...+.. ...+|+-.||.=-++|
T Consensus 82 ~~~-----------~-~~~d~IIaiGG-Gsv~D~ak~vA~---~rgip~I~IPTT~~td 124 (350)
T PRK00843 82 KAK-----------D-VNAGFLIGVGG-GKVIDVAKLAAY---RLGIPFISVPTAASHD 124 (350)
T ss_pred Hhh-----------c-cCCCEEEEeCC-chHHHHHHHHHH---hcCCCEEEeCCCccCC
Confidence 221 1 23567888887 899988887752 2468999999654444
No 86
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=63.05 E-value=56 Score=34.53 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=52.1
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhccCC----eE----EEEc-c--Cch-hHHHHHHHHHHHhhhccchhhhhhc
Q 011293 35 PRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQ----VF----DVGE-E--APD-KALRRIYLNLETLKANGDAYATQIQ 102 (489)
Q Consensus 35 ~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~----V~----dl~~-~--~p~-~~l~~l~~~l~~l~~~~~~~a~~~~ 102 (489)
+.++++|+.++.-.. ....+...+.+.|.... +| .+.. + .+. +.++.+.+.+.+ ....
T Consensus 29 ~~~r~lvVtD~~v~~-~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~---------~~~~ 98 (369)
T cd08198 29 ARPKVLVVIDSGVAQ-ANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINR---------HGID 98 (369)
T ss_pred CCCeEEEEECcchHH-hhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHH---------cCCC
Confidence 346789998876543 21235667777775433 12 1112 1 221 222223333321 1123
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCC
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLG 140 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~G 140 (489)
+...||++|| |++..+...+... ....+|+-.||.=
T Consensus 99 r~~~IIalGG-G~v~D~ag~vA~~-~~rGip~I~IPTT 134 (369)
T cd08198 99 RHSYVIAIGG-GAVLDAVGYAAAT-AHRGVRLIRIPTT 134 (369)
T ss_pred cCcEEEEECC-hHHHHHHHHHHHH-hcCCCCEEEECCC
Confidence 3457888887 9999988877543 2357899999965
No 87
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=61.54 E-value=32 Score=35.30 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=30.2
Q ss_pred CcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhh
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPF 147 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfAr 147 (489)
=+.+|++|||||+.-+... .+ ...+++--||.=--||++-
T Consensus 92 Id~Li~IGGdgs~~~a~~L-~e---~~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 92 IEGLVVIGGDGSYTGAQKL-YE---EGGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred CCEEEEeCCchHHHHHHHH-HH---hhCCCEEeecccccCCCcC
Confidence 4689999999999765533 22 1357888899999999874
No 88
>PLN02564 6-phosphofructokinase
Probab=60.20 E-value=21 Score=38.96 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=37.4
Q ss_pred CcEEEEEcCchHHHHHHH---HHhhccCCCCCcEEEeeCCCCCchh---hhccCCCCCCCCChHHHHHHHHHHH
Q 011293 104 RLRIIVAGGDGTAGWLLG---VVCDLKLSHPPPIATVPLGTGNNLP---FAFGWGKKNPGTDRHAVEQFLRHVM 171 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~---~l~~~~~~~~~plgiIP~GTGNDfA---rsLG~~~~~~~~~~~~l~~~l~~i~ 171 (489)
=..++++|||||+.-+.. .+.+. ..++++.-||-==-||+. +++|.. .++..+.+.|.
T Consensus 177 Id~LivIGGDGS~~gA~~L~e~~~~~--g~~i~VIGIPKTIDNDI~~tD~T~GFd--------TAv~~~~~aI~ 240 (484)
T PLN02564 177 INQVYIIGGDGTQKGASVIYEEIRRR--GLKVAVAGIPKTIDNDIPVIDKSFGFD--------TAVEEAQRAIN 240 (484)
T ss_pred CCEEEEECCchHHHHHHHHHHHHHHc--CCCceEEEecccccCCCcCcccCCCHH--------HHHHHHHHHHH
Confidence 357999999999875443 33322 235668888988899987 345554 25555555543
No 89
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=59.69 E-value=31 Score=35.76 Aligned_cols=44 Identities=34% Similarity=0.589 Sum_probs=32.1
Q ss_pred CcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchh---hhccCC
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLP---FAFGWG 152 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfA---rsLG~~ 152 (489)
=+.+|++|||||+.-+. .|.+ ..+++--||.==-||++ .++|..
T Consensus 95 Id~LivIGGdgS~~~a~-~L~~----~gi~vigiPkTIDNDl~gtd~tiGfd 141 (324)
T TIGR02483 95 LDALIAIGGDGTLGIAR-RLAD----KGLPVVGVPKTIDNDLEATDYTFGFD 141 (324)
T ss_pred CCEEEEECCchHHHHHH-HHHh----cCCCEEeeccccCCCCcCCccCcCHH
Confidence 45899999999997554 3443 34888889988899997 345555
No 90
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=59.58 E-value=57 Score=34.64 Aligned_cols=97 Identities=16% Similarity=0.172 Sum_probs=52.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe----EEEE----c---cCch-hHHHHHHHHHHHhhhccchhhhhhcC
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV----FDVG----E---EAPD-KALRRIYLNLETLKANGDAYATQIQE 103 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V----~dl~----~---~~p~-~~l~~l~~~l~~l~~~~~~~a~~~~~ 103 (489)
.++++||..+.--.- ...++..+.+.|+...+ |+.. . ..|. +.+..+.+.+.+ ....+
T Consensus 42 ~~r~liVtD~~v~~~-~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~---------~~~dr 111 (389)
T PRK06203 42 PKKVLVVIDSGVLRA-HPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINR---------HGIDR 111 (389)
T ss_pred CCeEEEEECchHHHh-hhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHH---------cCCCC
Confidence 467888887554421 12356777787764332 3311 1 1232 323334443321 11223
Q ss_pred CcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeC--CCCCc
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPL--GTGNN 144 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~--GTGND 144 (489)
.+.||++|| |++..+...+..+ ....+|+-.||. |+..|
T Consensus 112 ~d~IIaiGG-Gsv~D~ak~iA~~-~~rgip~I~IPTTlla~vd 152 (389)
T PRK06203 112 HSYVLAIGG-GAVLDMVGYAAAT-AHRGVRLIRIPTTVLAQND 152 (389)
T ss_pred CceEEEeCC-cHHHHHHHHHHHH-hcCCCCEEEEcCCCccccC
Confidence 457888887 8888887766432 124689999996 34444
No 91
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=58.92 E-value=59 Score=33.42 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=27.7
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCC
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGN 143 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGN 143 (489)
+.+.||++|| |++..+...+.. ...+|+..||.=.++
T Consensus 75 ~~d~iIaiGG-Gsv~D~aK~vA~---~~~~p~i~vPTt~~t 111 (331)
T cd08174 75 NVDAVVGIGG-GKVIDVAKYAAF---LRGIPLSVPTTNLND 111 (331)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHh---hcCCCEEEecCcccc
Confidence 3577888887 899988887753 357899999974444
No 92
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=58.90 E-value=44 Score=35.42 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=29.7
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhc----------------c----------CCCCCcEEEeeC--CCCCchhhhccCC
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDL----------------K----------LSHPPPIATVPL--GTGNNLPFAFGWG 152 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~----------------~----------~~~~~plgiIP~--GTGNDfArsLG~~ 152 (489)
+.+.||++|| |++..+...+.-+ . ....+|+..||. |||-...+..-+.
T Consensus 78 ~~D~IIaiGG-GS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~I~VPTTagTGSE~t~~avi~ 154 (398)
T cd08178 78 KPDTIIALGG-GSPMDAAKIMWLFYEHPEVDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTSGTGSEVTPFAVIT 154 (398)
T ss_pred CCCEEEEeCC-ccHHHHHHHHHHHHhCCCcchhHhhhhhcccccccccccccCCCCCEEEeCCCCcccccccCeEEEE
Confidence 4578999998 5555555443210 0 013568999996 7887665554443
No 93
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=58.40 E-value=24 Score=38.14 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=37.9
Q ss_pred cEEEEEcCchHHHHHHH---HHhhccCCCCCcEEEeeCCCCCchh---hhccCCCCCCCCChHHHHHHHHHHH
Q 011293 105 LRIIVAGGDGTAGWLLG---VVCDLKLSHPPPIATVPLGTGNNLP---FAFGWGKKNPGTDRHAVEQFLRHVM 171 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl~---~l~~~~~~~~~plgiIP~GTGNDfA---rsLG~~~~~~~~~~~~l~~~l~~i~ 171 (489)
..++++|||||+.-+.. .+.+. ...+++--||-==-||+. +++|..+ ++..+.+.|.
T Consensus 174 ~~L~vIGGdgT~~gA~~l~ee~~~~--g~~I~VIGIPKTIDNDi~~td~S~GFdT--------Av~~a~~aI~ 236 (443)
T PRK06830 174 NILFVIGGDGTLRGASAIAEEIERR--GLKISVIGIPKTIDNDINFIQKSFGFET--------AVEKATEAIR 236 (443)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHh--CCCceEEEeccccCCCCcCcccCCCHHH--------HHHHHHHHHH
Confidence 57999999999965543 22221 235888889988899987 4555553 5555555443
No 94
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=57.40 E-value=36 Score=35.16 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=30.0
Q ss_pred CcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchh
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLP 146 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfA 146 (489)
=..+|++|||||+.-+.. |.+ ..+++--||-==-||+.
T Consensus 93 Id~Li~IGGdgs~~~a~~-L~e----~~i~vigiPkTIDNDi~ 130 (317)
T cd00763 93 IDALVVIGGDGSYMGAMR-LTE----HGFPCVGLPGTIDNDIP 130 (317)
T ss_pred CCEEEEECCchHHHHHHH-HHH----cCCCEEEecccccCCCC
Confidence 358999999999976653 333 25889999998899987
No 95
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=55.97 E-value=43 Score=35.06 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=23.8
Q ss_pred cEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 105 LRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
+.||++|| |++..+...+..+ ....+|+-.||.
T Consensus 90 d~IVaiGG-G~v~D~ak~~A~~-~~rg~p~i~VPT 122 (354)
T cd08199 90 EPVLAIGG-GVLTDVAGLAASL-YRRGTPYVRIPT 122 (354)
T ss_pred CEEEEECC-cHHHHHHHHHHHH-hcCCCCEEEEcC
Confidence 66777766 8888888777532 124789999997
No 96
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=54.19 E-value=49 Score=34.16 Aligned_cols=89 Identities=18% Similarity=0.157 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe--EEEEccCc-hhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcC
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV--FDVGEEAP-DKALRRIYLNLETLKANGDAYATQIQERLRIIVAGG 112 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V--~dl~~~~p-~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GG 112 (489)
.++++|+..+.. ...+++.+.+.|....+ |+-....| .+.++++.+.+ ++ .+.+.||++||
T Consensus 23 ~~~~livt~~~~----~~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~~~~~-----------~~-~~~d~IIaiGG 86 (337)
T cd08177 23 ASRALVLTTPSL----ATKLAERVASALGDRVAGTFDGAVMHTPVEVTEAAVAAA-----------RE-AGADGIVAIGG 86 (337)
T ss_pred CCeEEEEcChHH----HHHHHHHHHHHhccCCcEEeCCCCCCCCHHHHHHHHHHH-----------Hh-cCCCEEEEeCC
Confidence 357777764322 22367778888876533 33222222 22222222211 11 24578888887
Q ss_pred chHHHHHHHHHhhccCCCCCcEEEeeC-CCCCc
Q 011293 113 DGTAGWLLGVVCDLKLSHPPPIATVPL-GTGNN 144 (489)
Q Consensus 113 DGTv~~vl~~l~~~~~~~~~plgiIP~-GTGND 144 (489)
|++..+...+.-+ ..+|+..||. -||--
T Consensus 87 -Gs~iD~aK~ia~~---~~~p~i~IPTtatgse 115 (337)
T cd08177 87 -GSTIDLAKAIALR---TGLPIIAIPTTLSGSE 115 (337)
T ss_pred -cHHHHHHHHHHHH---hcCCEEEEcCCchhhh
Confidence 8988888776532 2678999994 25443
No 97
>PRK14072 6-phosphofructokinase; Provisional
Probab=53.30 E-value=43 Score=36.01 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=32.0
Q ss_pred CcEEEEEcCchHHHHHHH---HHhhccCCCCCcEEEeeCCCCCchh---hhccCC
Q 011293 104 RLRIIVAGGDGTAGWLLG---VVCDLKLSHPPPIATVPLGTGNNLP---FAFGWG 152 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~---~l~~~~~~~~~plgiIP~GTGNDfA---rsLG~~ 152 (489)
=+.+|++|||||+.-+.. .+.+ ....+++--||-==-||+. .++|..
T Consensus 104 Id~LivIGGdgS~~~a~~L~e~~~~--~g~~i~vIgIPkTIDNDl~gtD~t~GF~ 156 (416)
T PRK14072 104 IGYFFYNGGNDSMDTALKVSQLAKK--MGYPIRCIGIPKTIDNDLPGTDHCPGFG 156 (416)
T ss_pred CCEEEEECChHHHHHHHHHHHHHHH--hCCCceEEEeeecccCCCCCCCCCCChH
Confidence 368999999999975442 2221 1245889999977799988 344444
No 98
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=53.16 E-value=72 Score=33.33 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=29.3
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhc-----------c----CCCCCcEEEeeC--CCCCchhhhccCC
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDL-----------K----LSHPPPIATVPL--GTGNNLPFAFGWG 152 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~-----------~----~~~~~plgiIP~--GTGNDfArsLG~~ 152 (489)
+.+.||++|| |++..+...+.-+ . ....+|+..||. |||--..+.--+.
T Consensus 81 ~~D~IIaiGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~~aVit 146 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASRTAVLM 146 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCCcEEEE
Confidence 4578998988 5555554433210 0 012468999995 8887766654443
No 99
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=53.15 E-value=43 Score=34.86 Aligned_cols=99 Identities=19% Similarity=0.142 Sum_probs=52.5
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhccCCe----EEEEccCc-hhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcC
Q 011293 38 PVLVFINSKSGGQLGGDLLVTYRSLLNKNQV----FDVGEEAP-DKALRRIYLNLETLKANGDAYATQIQERLRIIVAGG 112 (489)
Q Consensus 38 ~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V----~dl~~~~p-~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GG 112 (489)
+++||..+ +- ....+++.+...|....+ |+-....| ...++++...+ + + .+.+.||++||
T Consensus 23 r~lvVt~~-~~--~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~---~--------~-~~~D~IIaiGG 87 (366)
T PF00465_consen 23 RVLVVTDP-SL--SKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQA---R--------K-FGADCIIAIGG 87 (366)
T ss_dssp EEEEEEEH-HH--HHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHH---H--------H-TTSSEEEEEES
T ss_pred CEEEEECc-hH--HhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHH---H--------h-cCCCEEEEcCC
Confidence 89999987 43 223367888888854333 44222233 23222222222 1 1 35678999998
Q ss_pred chHHHHHHHH---Hhhcc-------------CCCCCcEEEeeC--CCCCchhhhccCC
Q 011293 113 DGTAGWLLGV---VCDLK-------------LSHPPPIATVPL--GTGNNLPFAFGWG 152 (489)
Q Consensus 113 DGTv~~vl~~---l~~~~-------------~~~~~plgiIP~--GTGNDfArsLG~~ 152 (489)
|++..+... +.... ....+|+..||. |||-.+.+...+.
T Consensus 88 -GS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE~t~~avi~ 144 (366)
T PF00465_consen 88 -GSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSEVTPYAVIY 144 (366)
T ss_dssp -HHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGCCSSEEEEE
T ss_pred -CCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcccccccccccccc
Confidence 454444433 33210 012379999997 6666666555444
No 100
>PLN02834 3-dehydroquinate synthase
Probab=52.15 E-value=52 Score=35.50 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=24.3
Q ss_pred CcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCC
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLG 140 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~G 140 (489)
...||++|| |++..+...+... ....+|+-.||.-
T Consensus 164 ~~~VIAiGG-Gsv~D~ak~~A~~-y~rgiplI~VPTT 198 (433)
T PLN02834 164 RCTFVALGG-GVIGDMCGFAAAS-YQRGVNFVQIPTT 198 (433)
T ss_pred CcEEEEECC-hHHHHHHHHHHHH-hcCCCCEEEECCc
Confidence 446777777 8888888765421 1247899999983
No 101
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=52.08 E-value=54 Score=34.38 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=57.4
Q ss_pred cccccee-ecCCCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCc-hhHHHHHHH
Q 011293 15 FYIPSYV-LLPDSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAP-DKALRRIYL 85 (489)
Q Consensus 15 ~~~~~~~-~~~~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p-~~~l~~l~~ 85 (489)
|+.|+.| +-++.-.+ .......++++|+.-+.- ....+++.+...|....+ +.+.. ..| .+.+.++.+
T Consensus 1 f~~p~~i~~G~g~l~~l~~~l~~~~~~~~livt~~~~---~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~ 77 (376)
T cd08193 1 FQTPPRIVFGAGSLARLGELLAALGAKRVLVVTDPGI---LKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVE 77 (376)
T ss_pred CCCCCeEEECcCHHHHHHHHHHHcCCCeEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHH
Confidence 4567444 44433322 222333467777754321 112345667777765443 22222 223 222222222
Q ss_pred HHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhcc---------------CCCCCcEEEeeC--CCCCchhhh
Q 011293 86 NLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLK---------------LSHPPPIATVPL--GTGNNLPFA 148 (489)
Q Consensus 86 ~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~---------------~~~~~plgiIP~--GTGNDfArs 148 (489)
.+ ++ .+.+.||++|| |++..+...+.-+. ....+|+-.||. |||-.....
T Consensus 78 ~~-----------~~-~~~D~IIaiGG-Gs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgSe~t~~ 144 (376)
T cd08193 78 AA-----------RA-AGADGVIGFGG-GSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGTGSEVTPI 144 (376)
T ss_pred HH-----------Hh-cCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcchHhhCCe
Confidence 22 11 24578888888 77766665442210 013578999996 566554443
No 102
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=50.89 E-value=48 Score=34.54 Aligned_cols=41 Identities=17% Similarity=0.091 Sum_probs=29.8
Q ss_pred CcEEEEEcCchHHHHHHHH---HhhccCCCCCcEEEeeCCCCCchh
Q 011293 104 RLRIIVAGGDGTAGWLLGV---VCDLKLSHPPPIATVPLGTGNNLP 146 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~---l~~~~~~~~~plgiIP~GTGNDfA 146 (489)
=+.+|++|||||+.-+... +.+ ....+++--||-=--||+.
T Consensus 93 I~~Lv~IGGd~s~~~a~~L~e~~~~--~~~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 93 IDALVVIGGDGSYTGADLLTEEWPS--KYQGFNVIGLPGTIDNDIK 136 (338)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHHh--cCCCccEEEeeecccCCCc
Confidence 3589999999999755432 222 2346889999976689987
No 103
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=50.61 E-value=1e+02 Score=32.49 Aligned_cols=99 Identities=20% Similarity=0.226 Sum_probs=53.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc----cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEc
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE----EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAG 111 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~----~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~G 111 (489)
++++|+..+.... ..++..+.+.|....+ +.+.. ..+... +.+.++. +++ .+.+.||++|
T Consensus 23 ~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~---v~~~~~~--------~~~-~~~D~IIaiG 87 (386)
T cd08191 23 SRALIVTDERMAG---TPVFAELVQALAAAGVEVEVFDGVLPDLPRSE---LCDAASA--------AAR-AGPDVIIGLG 87 (386)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHcCCeEEEECCCCCCcCHHH---HHHHHHH--------HHh-cCCCEEEEeC
Confidence 6788888644432 3456667777765443 33322 112222 2222221 111 3457888888
Q ss_pred CchHHHHHHHHHhhcc---------------CCCCCcEEEeeC--CCCCchhhhccC
Q 011293 112 GDGTAGWLLGVVCDLK---------------LSHPPPIATVPL--GTGNNLPFAFGW 151 (489)
Q Consensus 112 GDGTv~~vl~~l~~~~---------------~~~~~plgiIP~--GTGNDfArsLG~ 151 (489)
| |++..+...+.-+. ....+|+..||. |||-...+.--+
T Consensus 88 G-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~avi 143 (386)
T cd08191 88 G-GSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVTPVAVL 143 (386)
T ss_pred C-chHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhCCeEEE
Confidence 8 77776665543110 012578999985 677766665443
No 104
>PRK03202 6-phosphofructokinase; Provisional
Probab=49.49 E-value=54 Score=33.97 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=30.3
Q ss_pred CcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhh
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPF 147 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfAr 147 (489)
=+.+|++|||||+.-+.. |.+ ..+++--||.==-||+.-
T Consensus 94 Id~Li~IGGd~s~~~a~~-L~e----~~i~vigiPkTIDNDl~g 132 (320)
T PRK03202 94 IDALVVIGGDGSYMGAKR-LTE----HGIPVIGLPGTIDNDIAG 132 (320)
T ss_pred CCEEEEeCChHHHHHHHH-HHh----cCCcEEEecccccCCCCC
Confidence 468999999999986554 332 367888899888999883
No 105
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=48.97 E-value=3.7 Score=37.63 Aligned_cols=13 Identities=46% Similarity=0.966 Sum_probs=11.0
Q ss_pred EEcCchHHHHHHH
Q 011293 109 VAGGDGTAGWLLG 121 (489)
Q Consensus 109 v~GGDGTv~~vl~ 121 (489)
-.|||||.||+-.
T Consensus 130 gdGGDGT~hW~Yd 142 (180)
T PLN00180 130 GDGGDGTGHWVYE 142 (180)
T ss_pred ccCCCCceeeEee
Confidence 5699999999864
No 106
>PRK10586 putative oxidoreductase; Provisional
Probab=48.34 E-value=1.3e+02 Score=31.47 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=26.0
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCc
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNN 144 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGND 144 (489)
+.+.||++|| |++..+...+.. ...+|+..||.=-+++
T Consensus 86 ~~d~iiavGG-Gs~iD~aK~~a~---~~~~p~i~vPT~a~t~ 123 (362)
T PRK10586 86 DRQVVIGVGG-GALLDTAKALAR---RLGLPFVAIPTIAATC 123 (362)
T ss_pred CCCEEEEecC-cHHHHHHHHHHh---hcCCCEEEEeCCcccc
Confidence 3467888887 777777766653 2468999999744443
No 107
>PLN02884 6-phosphofructokinase
Probab=47.48 E-value=58 Score=34.95 Aligned_cols=57 Identities=25% Similarity=0.302 Sum_probs=37.1
Q ss_pred cEEEEEcCchHHHHHHH---HHhhccCCCCCcEEEeeCCCCCchh---hhccCCCCCCCCChHHHHHHHHHHH
Q 011293 105 LRIIVAGGDGTAGWLLG---VVCDLKLSHPPPIATVPLGTGNNLP---FAFGWGKKNPGTDRHAVEQFLRHVM 171 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl~---~l~~~~~~~~~plgiIP~GTGNDfA---rsLG~~~~~~~~~~~~l~~~l~~i~ 171 (489)
..+|++|||||+.-+.. .+.+ ....+++--||-==-||+. .++|..+ +++.+.+.|.
T Consensus 145 d~LivIGGdgS~~~a~~L~~~~~~--~g~~i~vIGIPkTIDNDi~~tD~TiGFdT--------Av~~~~~ai~ 207 (411)
T PLN02884 145 NMLFVLGGNGTHAGANAIHNECRK--RKMKVSVVGVPKTIDNDILLMDKTFGFDT--------AVEEAQRAIN 207 (411)
T ss_pred CEEEEECCchHHHHHHHHHHHHHH--cCCCceEEeccccccCCCcCcccCCCHHH--------HHHHHHHHHH
Confidence 58999999999975443 2221 1235889999988889986 3445542 5555555543
No 108
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=46.06 E-value=53 Score=35.14 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=29.6
Q ss_pred CcEEEEEcCchHHHHHHHH---HhhccCCCCCcEEEeeCCCCCchh
Q 011293 104 RLRIIVAGGDGTAGWLLGV---VCDLKLSHPPPIATVPLGTGNNLP 146 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~---l~~~~~~~~~plgiIP~GTGNDfA 146 (489)
=+.+|++|||||+.-+... +.+. ...+++--||-==-||+.
T Consensus 113 Id~Li~IGGdgS~~~a~~L~~~~~~~--g~~i~vvgIPkTIDNDl~ 156 (403)
T PRK06555 113 VDILHTIGGDDTNTTAADLAAYLAEN--GYDLTVVGLPKTIDNDVV 156 (403)
T ss_pred CCEEEEECChhHHHHHHHHHHHHHHh--CCCceEEEeeeeeeCCCC
Confidence 4689999999998755432 2211 236889999988899986
No 109
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=46.06 E-value=68 Score=37.71 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=45.5
Q ss_pred ccccccceeecCCC-CCcccCC-CCCCcEEEEEcCCCCCCChhhHHHHHHHHhc--cCCe-EEEEc---cCch-hHHHHH
Q 011293 13 KEFYIPSYVLLPDS-ESETVPD-VPRCPVLVFINSKSGGQLGGDLLVTYRSLLN--KNQV-FDVGE---EAPD-KALRRI 83 (489)
Q Consensus 13 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~--~~~V-~dl~~---~~p~-~~l~~l 83 (489)
+-|++|+.|..... -...... ...++++|+..+..- ...++..+.+.|. ...+ +.+.. ..|. +.++++
T Consensus 455 ~~~~~P~~i~~G~g~l~~l~~~l~~~~~~lvVtd~~~~---~~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~ 531 (862)
T PRK13805 455 QWFKVPKKIYFERGSLPYLLDELDGKKRAFIVTDRFMV---ELGYVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKG 531 (862)
T ss_pred eeeecCCeEEECCCHHHHHHHHhcCCCEEEEEECcchh---hcchHHHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHH
Confidence 44778865554433 2211100 134678888754331 1225667777776 3333 22221 2232 222222
Q ss_pred HHHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHH
Q 011293 84 YLNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVV 123 (489)
Q Consensus 84 ~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l 123 (489)
...+ ++ .+.+.||++|| |++..+...+
T Consensus 532 ~~~~-----------~~-~~~D~IIaiGG-GSviD~AK~i 558 (862)
T PRK13805 532 AELM-----------RS-FKPDTIIALGG-GSPMDAAKIM 558 (862)
T ss_pred HHHH-----------Hh-cCCCEEEEeCC-chHHHHHHHH
Confidence 2221 11 24578888888 6666655444
No 110
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=45.84 E-value=98 Score=32.37 Aligned_cols=88 Identities=17% Similarity=0.290 Sum_probs=55.6
Q ss_pred cccccceeecCCCCC-cccCCCCC-CcEEEEEcCCCCCCChhhHHHHHHHHhccCCeEEEEccCchhHHHHHHHHHHHhh
Q 011293 14 EFYIPSYVLLPDSES-ETVPDVPR-CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQVFDVGEEAPDKALRRIYLNLETLK 91 (489)
Q Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~~~-~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V~dl~~~~p~~~l~~l~~~l~~l~ 91 (489)
.|..|+.|+-.+..- ......|. .+++|.|--.|= +-.-+..++.+.|+..+++++..-.|...++.+.++++
T Consensus 5 ~y~nPTki~FGkg~i~~l~~ei~~~~kVLi~YGGGSI--KrnGvydqV~~~Lkg~~~~E~~GVEPNP~~~Tv~kaV~--- 79 (384)
T COG1979 5 TYHNPTKILFGKGQIAELREEIPKDAKVLIVYGGGSI--KKNGVYDQVVEALKGIEVIEFGGVEPNPRLETLMKAVE--- 79 (384)
T ss_pred cccCCceEEecCchHHHHHhhccccCeEEEEecCccc--cccchHHHHHHHhcCceEEEecCCCCCchHHHHHHHHH---
Confidence 578999998887762 23333333 678888853222 33446788888888888888876455555555777664
Q ss_pred hccchhhhhhcCCcEEEEEcC
Q 011293 92 ANGDAYATQIQERLRIIVAGG 112 (489)
Q Consensus 92 ~~~~~~a~~~~~~~~IIv~GG 112 (489)
+.++ ++-+-|+++||
T Consensus 80 -----i~ke-e~idflLAVGG 94 (384)
T COG1979 80 -----ICKE-ENIDFLLAVGG 94 (384)
T ss_pred -----HHHH-cCceEEEEecC
Confidence 2221 23356778877
No 111
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=45.55 E-value=1.2e+02 Score=31.62 Aligned_cols=91 Identities=14% Similarity=0.193 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCCeEEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHH
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQVFDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTA 116 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv 116 (489)
++++|+..+.-. ..+.+.+++.|....++.+....+...++.+.+.++.+.+. ...+.+.||++|| |++
T Consensus 20 ~r~lIVtD~~v~----~l~~~~l~~~L~~~~~~~~~~~e~~k~l~~v~~~~~~~~~~------~~~r~d~iIaiGG-Gsv 88 (346)
T cd08196 20 ENDVFIVDANVA----ELYRDRLDLPLDAAPVIAIDATEENKSLEAVSSVIESLRQN------GARRNTHLVAIGG-GII 88 (346)
T ss_pred CeEEEEECccHH----HHHHHHHHHHhcCCeEEEeCCCCCCCCHHHHHHHHHHHHHc------CCCCCcEEEEECC-hHH
Confidence 678888876552 22666777777543333222211221122122222222211 1123467777777 777
Q ss_pred HHHHHHHhhccCCCCCcEEEeeC
Q 011293 117 GWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 117 ~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
..+...+..+ ....+++-.||.
T Consensus 89 ~D~ak~vA~~-~~rgi~~i~iPT 110 (346)
T cd08196 89 QDVTTFVASI-YMRGVSWSFVPT 110 (346)
T ss_pred HHHHHHHHHH-HHcCCCeEEecc
Confidence 7777666421 124567777775
No 112
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=44.54 E-value=12 Score=39.66 Aligned_cols=58 Identities=26% Similarity=0.391 Sum_probs=37.4
Q ss_pred CcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCce
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKE 175 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~ 175 (489)
-+.||..||||||--+.....+ .-||+--.-+|| ||.=.- .+.++..+.+..+.+++.
T Consensus 169 ~D~iItLGGDGTvL~aS~LFq~----~VPPV~sFslGs-------lGFLtp---f~f~~f~~~l~~v~~~~~ 226 (409)
T KOG2178|consen 169 FDLIITLGGDGTVLYASSLFQR----SVPPVLSFSLGS-------LGFLTP---FPFANFQEQLARVLNGRA 226 (409)
T ss_pred eeEEEEecCCccEEEehhhhcC----CCCCeEEeecCC-------cccccc---ccHHHHHHHHHHHhcCcc
Confidence 3679999999998665555442 346666566664 333221 123567788888888874
No 113
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.77 E-value=40 Score=31.04 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=39.1
Q ss_pred cEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHc
Q 011293 105 LRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMN 172 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~ 172 (489)
..-+.++|+-| ..++..+..+ ...++-+-+|=+|| ||+.+.... ....+++.++++.+.+
T Consensus 43 ~~n~g~~G~t~-~~~~~~l~~~-~~~~pd~Vii~~G~-ND~~~~~~~-----~~~~~~l~~li~~i~~ 102 (191)
T cd01836 43 WRLFAKTGATS-ADLLRQLAPL-PETRFDVAVISIGV-NDVTHLTSI-----ARWRKQLAELVDALRA 102 (191)
T ss_pred EEEEecCCcCH-HHHHHHHHhc-ccCCCCEEEEEecc-cCcCCCCCH-----HHHHHHHHHHHHHHHh
Confidence 35668888854 5556655431 23577899999999 998763221 1234577888888865
No 114
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=43.67 E-value=23 Score=32.06 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=35.7
Q ss_pred EEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcC
Q 011293 107 IIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNA 173 (489)
Q Consensus 107 IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a 173 (489)
-..++|+.|- +++..+.+.-...+|.+.+|=+|| ||+.+. .+. ....+.+.++++.+.+.
T Consensus 27 N~Gi~G~~~~-~~~~~~~~~~~~~~p~~vvi~~G~-ND~~~~--~~~---~~~~~~~~~lv~~i~~~ 86 (171)
T cd04502 27 NRGFGGSTLA-DCLHYFDRLVLPYQPRRVVLYAGD-NDLASG--RTP---EEVLRDFRELVNRIRAK 86 (171)
T ss_pred ecCcccchHH-HHHHHHHhhhccCCCCEEEEEEec-CcccCC--CCH---HHHHHHHHHHHHHHHHH
Confidence 3467788543 444444332223467899999999 998652 221 22345677777777643
No 115
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=42.71 E-value=12 Score=33.61 Aligned_cols=13 Identities=54% Similarity=1.048 Sum_probs=10.9
Q ss_pred cEEEEEcCchHHH
Q 011293 105 LRIIVAGGDGTAG 117 (489)
Q Consensus 105 ~~IIv~GGDGTv~ 117 (489)
.|+|+||||||-+
T Consensus 86 QRlIvsGGegtss 98 (160)
T PF12219_consen 86 QRLIVSGGEGTSS 98 (160)
T ss_dssp -EEEEESSSSSSG
T ss_pred cEEEEeCCCCccc
Confidence 5999999999964
No 116
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=40.17 E-value=77 Score=32.80 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=25.6
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCC
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLG 140 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~G 140 (489)
+.+.||++|| |++..+...+.- ...+|+-.||.=
T Consensus 80 ~~d~IIaIGG-Gs~~D~aK~vA~---~~~~p~i~IPTT 113 (348)
T cd08175 80 DTDLIIAVGS-GTINDITKYVSY---KTGIPYISVPTA 113 (348)
T ss_pred cCCEEEEECC-cHHHHHHHHHHH---hcCCCEEEecCc
Confidence 4678998988 788888877653 246799999964
No 117
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=39.49 E-value=42 Score=30.44 Aligned_cols=51 Identities=22% Similarity=0.282 Sum_probs=33.1
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCc
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAK 174 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~ 174 (489)
....++.++|.| +-+.+|=+|| ||+.+..+.+. .....++.++++.+.+..
T Consensus 44 ~~~~~~~~~g~~-----------------pd~vii~~G~-ND~~~~~~~~~---~~~~~~~~~li~~i~~~~ 94 (169)
T cd01831 44 AEYSIIAYSGIG-----------------PDLVVINLGT-NDFSTGNNPPG---EDFTNAYVEFIEELRKRY 94 (169)
T ss_pred CcEEEEEecCCC-----------------CCEEEEECCc-CCCCCCCCCCH---HHHHHHHHHHHHHHHHHC
Confidence 346788999998 5689999999 99865332111 122346667777776533
No 118
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=39.42 E-value=1.6e+02 Score=29.47 Aligned_cols=35 Identities=23% Similarity=0.031 Sum_probs=25.5
Q ss_pred hhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 96 AYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 96 ~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
+++.-....+.+|.+|| +|+.|++. ..+|.-++|.
T Consensus 234 ~m~~lm~~aDl~Is~~G-~T~~E~~a--------~g~P~i~i~~ 268 (279)
T TIGR03590 234 NMAELMNEADLAIGAAG-STSWERCC--------LGLPSLAICL 268 (279)
T ss_pred HHHHHHHHCCEEEECCc-hHHHHHHH--------cCCCEEEEEe
Confidence 44444556788888999 99999875 2567777776
No 119
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=39.33 E-value=96 Score=31.98 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=47.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEE--c--cCc-hhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEE
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVG--E--EAP-DKALRRIYLNLETLKANGDAYATQIQERLRIIVA 110 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~--~--~~p-~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~ 110 (489)
++++||..+.+-.. ..+.+.+.|....+ +.+. . ..| .+.+++++..+ ++ +.+.||++
T Consensus 25 ~kvlivtd~~~~~~----~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~-----------~~--~~d~IIai 87 (332)
T cd08549 25 SKIMIVCGNNTYKV----AGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKL-----------DK--DTEFLLGI 87 (332)
T ss_pred CcEEEEECCcHHHH----HHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHh-----------hc--CCCEEEEE
Confidence 67888887665322 23566666655432 2222 1 112 22222222221 12 45788888
Q ss_pred cCchHHHHHHHHHhhccCCCCCcEEEeeCC
Q 011293 111 GGDGTAGWLLGVVCDLKLSHPPPIATVPLG 140 (489)
Q Consensus 111 GGDGTv~~vl~~l~~~~~~~~~plgiIP~G 140 (489)
|| |++..+...+.- ...+|+-.||.=
T Consensus 88 GG-Gsv~D~aK~iA~---~~gip~I~VPTT 113 (332)
T cd08549 88 GS-GTIIDLVKFVSF---KVGKPFISVPTA 113 (332)
T ss_pred CC-cHHHHHHHHHHH---HcCCCEEEeCCC
Confidence 88 888888877652 246899999964
No 120
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=38.83 E-value=57 Score=33.06 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=29.5
Q ss_pred CcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhh
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPF 147 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfAr 147 (489)
=+.+|++|||||+..+. .|.+ ...+++-.||-=--||++-
T Consensus 93 Id~Li~IGG~gs~~~a~-~L~~---~~~i~vigiPkTIDNDi~g 132 (282)
T PF00365_consen 93 IDALIVIGGDGSMKGAH-KLSE---EFGIPVIGIPKTIDNDIPG 132 (282)
T ss_dssp ESEEEEEESHHHHHHHH-HHHH---HHHSEEEEEEEETTSSCTT
T ss_pred CCEEEEecCCCHHHHHH-HHHh---cCceEEEEEeccccCCcCC
Confidence 35899999999987654 3331 1137899999988899885
No 121
>PRK14071 6-phosphofructokinase; Provisional
Probab=38.60 E-value=1.2e+02 Score=32.05 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=31.9
Q ss_pred CcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchh---hhccCC
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLP---FAFGWG 152 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfA---rsLG~~ 152 (489)
=+.+|++|||||+.-+ ..|.+ ...+++--||-==-||+. +++|..
T Consensus 108 Id~Li~IGGdgS~~~a-~~L~~---~~~i~vIgiPkTIDNDl~~td~t~Gf~ 155 (360)
T PRK14071 108 LDALIGIGGDGSLAIL-RRLAQ---QGGINLVGIPKTIDNDVGATEVSIGFD 155 (360)
T ss_pred CCEEEEECChhHHHHH-HHHHH---hcCCcEEEecccccCCCcCcccCcChh
Confidence 4689999999998643 33432 126888999988799986 345555
No 122
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=37.20 E-value=54 Score=32.35 Aligned_cols=57 Identities=30% Similarity=0.505 Sum_probs=37.2
Q ss_pred eEEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCC
Q 011293 68 VFDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTG 142 (489)
Q Consensus 68 V~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTG 142 (489)
+||+..-+ ++|+...+.+++. -.....|+++|=||+|-.|+++|. .+|+--+|.-+|
T Consensus 150 ~~DvGVAG----iHRLl~~l~r~~~--------~~~~~lIVvAGMEGaLPsvvagLv------D~PVIavPTsVG 206 (254)
T COG1691 150 VYDVGVAG----IHRLLSALKRLKI--------EDADVLIVVAGMEGALPSVVAGLV------DVPVIAVPTSVG 206 (254)
T ss_pred EEeeccch----HHhhhhHHHHHHh--------hCCCeEEEEcccccchHHHHHhcc------CCCeEecccccc
Confidence 36664432 3456665544331 123457889999999999999997 356666777665
No 123
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=35.03 E-value=49 Score=33.02 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=25.2
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCc
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNN 144 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGND 144 (489)
+.+.||++|| ||++.+...+.. ....|+..+|.=--||
T Consensus 75 ~~d~ii~vGg-G~i~D~~K~~A~---~~~~p~isVPTa~S~D 112 (250)
T PF13685_consen 75 DADLIIGVGG-GTIIDIAKYAAF---ELGIPFISVPTAASHD 112 (250)
T ss_dssp T--EEEEEES-HHHHHHHHHHHH---HHT--EEEEES--SSG
T ss_pred CCCEEEEeCC-cHHHHHHHHHHH---hcCCCEEEeccccccc
Confidence 3457777777 999999987753 2478999999888888
No 124
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=34.67 E-value=1.6e+02 Score=32.64 Aligned_cols=43 Identities=21% Similarity=0.125 Sum_probs=29.5
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeC--CCCCchhh
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPL--GTGNNLPF 147 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~--GTGNDfAr 147 (489)
+.+.||++|| |++..++..+... ....+|+..||. -..+|-+-
T Consensus 269 r~D~IIAIGG-Gsv~D~AKfvA~~-y~rGi~~i~vPTTllA~vDss~ 313 (542)
T PRK14021 269 RSDAIVGLGG-GAATDLAGFVAAT-WMRGIRYVNCPTSLLAMVDAST 313 (542)
T ss_pred CCcEEEEEcC-hHHHHHHHHHHHH-HHcCCCEEEeCChHHhhhcccc
Confidence 4567888877 8999888777531 125789999998 44555433
No 125
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=34.35 E-value=1.8e+02 Score=30.94 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=58.1
Q ss_pred EEcCCCCCCChhhHHHHHHHHhccCC-eEEEEccCchhHHHHHHHHHHHhhhc--------------cc-hhhhhh-cCC
Q 011293 42 FINSKSGGQLGGDLLVTYRSLLNKNQ-VFDVGEEAPDKALRRIYLNLETLKAN--------------GD-AYATQI-QER 104 (489)
Q Consensus 42 ivNP~SG~~~g~~~l~~~~~~L~~~~-V~dl~~~~p~~~l~~l~~~l~~l~~~--------------~~-~~a~~~-~~~ 104 (489)
++--.+|+--+.-+...+..+|.... ++.+....+..+.. +.+.|.++..+ +| .+.... +..
T Consensus 91 v~Hi~agNvp~~~~~S~~~~lL~gn~nivK~ss~d~~~~~~-l~~~l~~~~~~~~l~~~i~v~~~~~~d~~~~~~~~~~~ 169 (399)
T PF05893_consen 91 VFHIAAGNVPLVGFYSLVRGLLSGNANIVKLSSRDPFLAPA-LLRSLAEIDPEHPLADSIAVVYWPGGDEELEEALSQQA 169 (399)
T ss_pred EEEEcCCCccchHHHHHHHHHHhCCceEEECCCCchhHHHH-HHHHHHhhCccchhhhcEEEEEecCCchHHHHHHHHHC
Confidence 33336787777778888888887653 47676555544433 55555443321 11 222223 456
Q ss_pred cEEEEEcCchHHHHHHHHHhh----ccCCCCCcEEEeeCC
Q 011293 105 LRIIVAGGDGTAGWLLGVVCD----LKLSHPPPIATVPLG 140 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl~~l~~----~~~~~~~plgiIP~G 140 (489)
+.||+-|||-|+.++-..+.. +...++..+++|-.-
T Consensus 170 D~vv~wGgd~ti~~ir~~~~~~~~~i~fg~k~S~avi~~~ 209 (399)
T PF05893_consen 170 DAVVAWGGDETIRAIRQPLPPGARLIEFGPKYSFAVIDAE 209 (399)
T ss_pred CEEEEeCCHHHHHHHHHHcCCCCcEeeeCCceEEEEEcCc
Confidence 799999999999998874321 112355566666443
No 126
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=34.15 E-value=46 Score=33.25 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=27.0
Q ss_pred ccccceeecCC-C--CCcc---cCCCCCCcEEEEEcCCCCCCCh
Q 011293 15 FYIPSYVLLPD-S--ESET---VPDVPRCPVLVFINSKSGGQLG 52 (489)
Q Consensus 15 ~~~~~~~~~~~-~--~~~~---~~~~~~~~vlvivNP~SG~~~g 52 (489)
..||-|+--.. . |..+ ....|..++++|+||.||-|.+
T Consensus 3 ilvPlY~yP~~~~~~W~~l~~a~~~~p~~~f~vIiNP~sGPG~~ 46 (253)
T PF12138_consen 3 ILVPLYIYPLPGAAAWDPLYDAIAAHPSVPFTVIINPNSGPGSA 46 (253)
T ss_pred eEEEEeeCCCCCCcchHHHHHHHhcCCCCcEEEEEcCCCCCCCC
Confidence 45788885321 1 3333 5677889999999999998854
No 127
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=33.22 E-value=9.9 Score=32.25 Aligned_cols=9 Identities=33% Similarity=0.442 Sum_probs=2.9
Q ss_pred ccccccccc
Q 011293 466 EEHRKFGAA 474 (489)
Q Consensus 466 ~~~~~~~~~ 474 (489)
.-+-+||+|
T Consensus 41 ~p~p~fgea 49 (101)
T PF09026_consen 41 VPVPEFGEA 49 (101)
T ss_dssp -----HHHH
T ss_pred ccchhHHHH
Confidence 445678776
No 128
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=32.90 E-value=1.1e+02 Score=35.42 Aligned_cols=43 Identities=23% Similarity=0.310 Sum_probs=30.2
Q ss_pred CcEEEEEcCchHHHHHHHHHhh-ccC-CCCCcEEEeeCCCCCchh
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCD-LKL-SHPPPIATVPLGTGNNLP 146 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~-~~~-~~~~plgiIP~GTGNDfA 146 (489)
=+.+|++|||||+.-+...... ... ...+|+-.||.==-||++
T Consensus 479 Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~ 523 (745)
T TIGR02478 479 IDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVP 523 (745)
T ss_pred CCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCC
Confidence 3579999999999755432210 001 136899999999999997
No 129
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=32.16 E-value=1.2e+02 Score=34.24 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=32.8
Q ss_pred cEEEEEcCchHHHHHH---HHHhhccCCCCCcEEEeeCCCCCchh-----hhccCCC
Q 011293 105 LRIIVAGGDGTAGWLL---GVVCDLKLSHPPPIATVPLGTGNNLP-----FAFGWGK 153 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl---~~l~~~~~~~~~plgiIP~GTGNDfA-----rsLG~~~ 153 (489)
+.+|++|||||..-+. ..+.+ ....+++--||-==-||+. .++|..+
T Consensus 175 d~LvvIGGddS~~~A~~Lae~~~~--~~~~i~VIGIPKTIDNDL~~~~td~s~GFdT 229 (610)
T PLN03028 175 DGLVIIGGVTSNTDAAQLAETFAE--AKCKTKVVGVPVTLNGDLKNQFVETNVGFDT 229 (610)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHH--cCCCceEEEeceeeeCCCCCCCCCCCcCHHH
Confidence 5799999999986543 22322 1236888888987799997 5666653
No 130
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=31.92 E-value=1.2e+02 Score=33.95 Aligned_cols=75 Identities=16% Similarity=0.326 Sum_probs=44.0
Q ss_pred cEEEEEcCchHHHHHHH---HHhhccCCCCCcEEEeeCCCCCchh-----hhccCCCCCCCCChHHHHHHHHHH-HcCce
Q 011293 105 LRIIVAGGDGTAGWLLG---VVCDLKLSHPPPIATVPLGTGNNLP-----FAFGWGKKNPGTDRHAVEQFLRHV-MNAKE 175 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl~---~l~~~~~~~~~plgiIP~GTGNDfA-----rsLG~~~~~~~~~~~~l~~~l~~i-~~a~~ 175 (489)
+.+|++|||||+.-+.. .+.+ ....+++--||-==-||+. .++|..+ ..+.+.+++..| ..+..
T Consensus 166 d~LviIGGd~S~~~A~~Lae~~~~--~~~~i~VIGIPkTIDNDl~~~~id~s~GFdT-----A~~~~~~~I~~i~~Da~s 238 (555)
T PRK07085 166 DGLVIIGGDDSNTNAAILAEYFAK--HGCKTQVIGVPKTIDGDLKNEFIETSFGFDT-----ATKTYSEMIGNISRDALS 238 (555)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHH--hCCCccEEEEeeeecCCCCCCcccccCCHHH-----HHHHHHHHHHHHHHHHHh
Confidence 57999999999865442 2222 1247888889987789996 4566653 112233445555 22332
Q ss_pred eeEeEEEEEeec
Q 011293 176 MKIDNWHILMRL 187 (489)
Q Consensus 176 ~~iD~w~i~~~~ 187 (489)
.. ..|.+.-.|
T Consensus 239 ~~-~~~~~VevM 249 (555)
T PRK07085 239 AK-KYWHFIKLM 249 (555)
T ss_pred cC-CcEEEEEEC
Confidence 22 346654444
No 131
>PRK06756 flavodoxin; Provisional
Probab=31.20 E-value=2.8e+02 Score=24.59 Aligned_cols=29 Identities=3% Similarity=0.119 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCC
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQ 67 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~ 67 (489)
.+++|||=+. .|...++.+.+.+.|....
T Consensus 2 mkv~IiY~S~--tGnTe~vA~~ia~~l~~~g 30 (148)
T PRK06756 2 SKLVMIFASM--SGNTEEMADHIAGVIRETE 30 (148)
T ss_pred ceEEEEEECC--CchHHHHHHHHHHHHhhcC
Confidence 4688888654 4577778888888776544
No 132
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=30.80 E-value=1.2e+02 Score=33.73 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=31.8
Q ss_pred cEEEEEcCchHHHHHHH---HHhhccCCCCCcEEEeeCCCCCchhh-----hccCC
Q 011293 105 LRIIVAGGDGTAGWLLG---VVCDLKLSHPPPIATVPLGTGNNLPF-----AFGWG 152 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl~---~l~~~~~~~~~plgiIP~GTGNDfAr-----sLG~~ 152 (489)
+.+|++|||||+.-+.- .+.+ ...++++--||-==-||+.. ++|..
T Consensus 163 d~LviIGGdgS~~~A~~Lae~~~~--~g~~i~VIGIPkTIDNDl~~~~td~s~GFd 216 (539)
T TIGR02477 163 DGLVIIGGDDSNTNAALLAEYFAK--HGLKTQVIGVPKTIDGDLKNQFIETSFGFD 216 (539)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHh--cCCCceEEEEeeeecCCCCCCCCCCCcCHH
Confidence 57999999999865442 2222 12457888889877899974 55555
No 133
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=28.91 E-value=1.6e+02 Score=34.10 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=27.8
Q ss_pred CcEEEEEcCchHHHHHHH----------HHhh--------ccCCCCCcEEEeeCCCCCchh
Q 011293 104 RLRIIVAGGDGTAGWLLG----------VVCD--------LKLSHPPPIATVPLGTGNNLP 146 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~----------~l~~--------~~~~~~~plgiIP~GTGNDfA 146 (489)
=+.+|++|||||+.-+.. .+.+ .+....+++--||-==-||++
T Consensus 95 Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~ 155 (745)
T TIGR02478 95 IDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMC 155 (745)
T ss_pred CCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCC
Confidence 468999999999864431 1110 011246788889944489988
No 134
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.19 E-value=1e+02 Score=28.85 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=26.5
Q ss_pred CCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcC
Q 011293 130 HPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNA 173 (489)
Q Consensus 130 ~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a 173 (489)
.++-+-+|=+|| ||..+.++++. ....+.+.++++.+.+.
T Consensus 78 ~~pd~vii~lGt-ND~~~~~~~~~---~~~~~~l~~lv~~i~~~ 117 (208)
T cd01839 78 SPLDLVIIMLGT-NDLKSYFNLSA---AEIAQGLGALVDIIRTA 117 (208)
T ss_pred CCCCEEEEeccc-cccccccCCCH---HHHHHHHHHHHHHHHhc
Confidence 467799999999 99877555442 12234566677777653
No 135
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=25.92 E-value=1.8e+02 Score=33.80 Aligned_cols=43 Identities=16% Similarity=0.054 Sum_probs=28.6
Q ss_pred CcEEEEEcCchHHHHHH----------HHHhhc--------cCCCCCcEEEeeCCCCCchh
Q 011293 104 RLRIIVAGGDGTAGWLL----------GVVCDL--------KLSHPPPIATVPLGTGNNLP 146 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl----------~~l~~~--------~~~~~~plgiIP~GTGNDfA 146 (489)
=+.+|++|||||+.-+. ..|.+- .....+++--||-==-||++
T Consensus 98 Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~ 158 (762)
T cd00764 98 ITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFC 158 (762)
T ss_pred CCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCC
Confidence 46899999999986433 112110 01235788888877799987
No 136
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=25.57 E-value=2.6e+02 Score=29.51 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=51.4
Q ss_pred cccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe----EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCC
Q 011293 29 ETVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV----FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQER 104 (489)
Q Consensus 29 ~~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V----~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~ 104 (489)
+..+....++++|+.|+.= +..++..+...|....+ +.+-.....+.++.+.+-+..|. .....+.
T Consensus 26 ~l~~~~~~~k~~ivtd~~v----~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll------~~~~~R~ 95 (360)
T COG0337 26 ELAELLAGRKVAIVTDETV----APLYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALL------EAGLDRK 95 (360)
T ss_pred hhhhhccCCeEEEEECchh----HHHHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHH------HcCCCCC
Confidence 3444555568999998654 33356677777765443 22222112222221222222111 1122345
Q ss_pred cEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 105 LRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
..||+.|| |++..+++-.... ....+++--||.
T Consensus 96 s~iialGG-GvigDlaGF~Aat-y~RGv~fiqiPT 128 (360)
T COG0337 96 STLIALGG-GVIGDLAGFAAAT-YMRGVRFIQIPT 128 (360)
T ss_pred cEEEEECC-hHHHHHHHHHHHH-HHcCCCeEeccc
Confidence 67888887 8998888765431 124566666664
No 137
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=25.49 E-value=1.7e+02 Score=32.65 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=29.1
Q ss_pred cEEEEEcCchHHHHHHH---HHhhccCCCCCcEEEeeCCCCCchhh
Q 011293 105 LRIIVAGGDGTAGWLLG---VVCDLKLSHPPPIATVPLGTGNNLPF 147 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl~---~l~~~~~~~~~plgiIP~GTGNDfAr 147 (489)
..+|++|||||..-+.. .+.+ ...++++--||-==-||+.-
T Consensus 168 d~LviIGGddS~~~A~~Lae~~~~--~g~~i~VIGVPKTIDNDl~~ 211 (550)
T cd00765 168 DALVVIGGDDSNTNAALLAENFRS--KGLKTRVIGVPKTIDGDLKN 211 (550)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHh--cCCCceEEEEeeeecCCCCC
Confidence 57999999999865432 2222 12357888889877999985
No 138
>PTZ00287 6-phosphofructokinase; Provisional
Probab=24.93 E-value=1.5e+02 Score=36.67 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=31.1
Q ss_pred CcEEEEEcCchHHHHHH---HHHhhccCCCCCcEEEeeCCCCCchhh-----hccCCC
Q 011293 104 RLRIIVAGGDGTAGWLL---GVVCDLKLSHPPPIATVPLGTGNNLPF-----AFGWGK 153 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl---~~l~~~~~~~~~plgiIP~GTGNDfAr-----sLG~~~ 153 (489)
=+.+||+|||||+.-+. ..+... .-++.+--||-==-||+.. ++|..+
T Consensus 929 ID~LVvIGGDgS~t~A~~LaE~f~~~--gi~i~VIGVPkTIDNDL~~~~tD~TiGFDT 984 (1419)
T PTZ00287 929 LNGLVMPGSNVTITEAALLAEYFLEK--KIPTSVVGIPLTGSNNLIHELIETCVGFDS 984 (1419)
T ss_pred CCEEEEECCchHHHHHHHHHHHHHhc--CCCccEEEeCceeeCCCCCCCCcCCCCHHH
Confidence 35799999999986543 222211 1233377788777899986 666653
No 139
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=24.21 E-value=3.1e+02 Score=25.44 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=41.7
Q ss_pred hhHHHHHHHHhccCCe-EEEEcc----CchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhcc
Q 011293 53 GDLLVTYRSLLNKNQV-FDVGEE----APDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLK 127 (489)
Q Consensus 53 ~~~l~~~~~~L~~~~V-~dl~~~----~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~ 127 (489)
....++....|....| |++..- .|+...+ +.+..++ ..-...|.++|+.+-|--|+.++.
T Consensus 11 ~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~-~~~~a~~-----------~g~~viIa~AG~aa~Lpgvva~~t--- 75 (156)
T TIGR01162 11 LPTMKKAADILEEFGIPYELRVVSAHRTPELMLE-YAKEAEE-----------RGIKVIIAGAGGAAHLPGMVAALT--- 75 (156)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHH-HHHHHHH-----------CCCeEEEEeCCccchhHHHHHhcc---
Confidence 4566777777877777 777542 3343322 3333210 011235668899888888887764
Q ss_pred CCCCCcEEEeeCCCC
Q 011293 128 LSHPPPIATVPLGTG 142 (489)
Q Consensus 128 ~~~~~plgiIP~GTG 142 (489)
..|+--+|.-++
T Consensus 76 ---~~PVIgvP~~~~ 87 (156)
T TIGR01162 76 ---PLPVIGVPVPSK 87 (156)
T ss_pred ---CCCEEEecCCcc
Confidence 445555666554
No 140
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=24.10 E-value=6.9e+02 Score=24.53 Aligned_cols=48 Identities=21% Similarity=0.141 Sum_probs=28.4
Q ss_pred CCcEEEEEcCc----hHHHHHHHHHhhccCCCCCcEEEeeCCC-CCchhhhccCC
Q 011293 103 ERLRIIVAGGD----GTAGWLLGVVCDLKLSHPPPIATVPLGT-GNNLPFAFGWG 152 (489)
Q Consensus 103 ~~~~IIv~GGD----GTv~~vl~~l~~~~~~~~~plgiIP~GT-GNDfArsLG~~ 152 (489)
+...+++..|| ||..+++..+... ...+++=+||-=| .+-.|-.+|++
T Consensus 92 g~~v~~l~~GDp~~ys~~~~l~~~l~~~--~~~~~veivPGIss~~a~aa~~g~p 144 (238)
T PRK05948 92 GEDVAFACEGDVSFYSTFTYLAQTLQEL--YPQVAIQTIPGVCSPLAAAAALGIP 144 (238)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHhc--CCCCCEEEECChhHHHHHHHHhCCC
Confidence 45688999999 5556666666531 1357788888322 23333444444
No 141
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=23.55 E-value=76 Score=28.64 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=36.5
Q ss_pred cEEEEEcCchHHHHHHHHH-hhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHc
Q 011293 105 LRIIVAGGDGTAGWLLGVV-CDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMN 172 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl~~l-~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~ 172 (489)
.....++|+.|-. ++..+ ..+ ...++-+.+|=+|| ||+.+.. +. ....+.+.++++.+.+
T Consensus 26 v~n~g~~G~t~~~-~~~~~~~~~-~~~~pd~v~i~~G~-ND~~~~~--~~---~~~~~~~~~l~~~~~~ 86 (174)
T cd01841 26 VNNLGIAGISSRQ-YLEHIEPQL-IQKNPSKVFLFLGT-NDIGKEV--SS---NQFIKWYRDIIEQIRE 86 (174)
T ss_pred EEecccccccHHH-HHHHHHHHH-HhcCCCEEEEEecc-ccCCCCC--CH---HHHHHHHHHHHHHHHH
Confidence 3456889997653 44444 222 23567899999999 9986532 21 1234567777777754
No 142
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=23.22 E-value=1.8e+02 Score=27.60 Aligned_cols=63 Identities=24% Similarity=0.306 Sum_probs=35.9
Q ss_pred CcEEEEEcCchHHH-----HHHHHHhhccCCCCCcEEEe----------eCCCCCchhhhccCCCCC--CCCChHHHHHH
Q 011293 104 RLRIIVAGGDGTAG-----WLLGVVCDLKLSHPPPIATV----------PLGTGNNLPFAFGWGKKN--PGTDRHAVEQF 166 (489)
Q Consensus 104 ~~~IIv~GGDGTv~-----~vl~~l~~~~~~~~~plgiI----------P~GTGNDfArsLG~~~~~--~~~~~~~l~~~ 166 (489)
..+|+++=|||+++ |.++..... ..|+-+| |.+...+.++++||.-.. .+.+.+++.+.
T Consensus 97 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~----~~~li~vvdnN~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~a 172 (195)
T cd02007 97 KRKVIAVIGDGALTGGMAFEALNNAGYL----KSNMIVILNDNEMSISPNVGTPGNLFEELGFRYIGPVDGHNIEALIKV 172 (195)
T ss_pred CCeEEEEEcccccccChHHHHHHHHHHh----CCCEEEEEECCCcccCCCCCCHHHHHHhcCCCccceECCCCHHHHHHH
Confidence 46899999999987 334333321 2222221 333456678889997542 34455556655
Q ss_pred HHHH
Q 011293 167 LRHV 170 (489)
Q Consensus 167 l~~i 170 (489)
++..
T Consensus 173 ~~~a 176 (195)
T cd02007 173 LKEV 176 (195)
T ss_pred HHHH
Confidence 5544
No 143
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=23.09 E-value=83 Score=27.95 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=22.9
Q ss_pred CcEEEEEcCchHHHHHHHHHhhc--cCCCCCcEEEee
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDL--KLSHPPPIATVP 138 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~--~~~~~~plgiIP 138 (489)
+..|+.-||=||+-|+...+.-. ....+.|+.++=
T Consensus 55 da~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~ 91 (133)
T PF03641_consen 55 DAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLN 91 (133)
T ss_dssp SEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEE
T ss_pred CEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeC
Confidence 45677889999999999887533 333444777663
No 144
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=22.77 E-value=2.1e+02 Score=25.38 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=33.0
Q ss_pred EEEcCchHHHHHHHHHhhcc-CCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHH
Q 011293 108 IVAGGDGTAGWLLGVVCDLK-LSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVM 171 (489)
Q Consensus 108 Iv~GGDGTv~~vl~~l~~~~-~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~ 171 (489)
|-++..+|..+.+..+.++. ....+.+-+|-+|| ||.. . .+++.++++.+.
T Consensus 26 i~a~~g~~~~~~~~~l~~~~~~~~~~d~vvi~lGt-Nd~~-----~-------~~nl~~ii~~~~ 77 (150)
T cd01840 26 IDAKVGRQMSEAPDLIRQLKDSGKLRKTVVIGLGT-NGPF-----T-------KDQLDELLDALG 77 (150)
T ss_pred EEeeecccHHHHHHHHHHHHHcCCCCCeEEEEecC-CCCC-----C-------HHHHHHHHHHcC
Confidence 33444456677776664432 22467899999999 9972 1 357888888774
No 145
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.70 E-value=1.3e+02 Score=27.41 Aligned_cols=58 Identities=9% Similarity=0.065 Sum_probs=37.0
Q ss_pred cEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCc
Q 011293 105 LRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAK 174 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~ 174 (489)
..=..+|||+++...+..+. ...++-+-+|=+|| ||+.... ...+++..+++.+.+..
T Consensus 34 v~N~g~~G~~~~~~~~~~~~---~~~~pd~vii~~G~-ND~~~~~--------~~~~~~~~~i~~i~~~~ 91 (177)
T cd01844 34 VINLGFSGNARLEPEVAELL---RDVPADLYIIDCGP-NIVGAEA--------MVRERLGPLVKGLRETH 91 (177)
T ss_pred eEEeeecccccchHHHHHHH---HhcCCCEEEEEecc-CCCccHH--------HHHHHHHHHHHHHHHHC
Confidence 45568899988654333222 12467899999999 8864321 12457778888886543
No 146
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=22.46 E-value=1.8e+02 Score=35.82 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=32.8
Q ss_pred cEEEEEcCchHHHHHHH---HHhhccCCCCCcEEEeeCCCCCchh-----hhccCCC
Q 011293 105 LRIIVAGGDGTAGWLLG---VVCDLKLSHPPPIATVPLGTGNNLP-----FAFGWGK 153 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl~---~l~~~~~~~~~plgiIP~GTGNDfA-----rsLG~~~ 153 (489)
+.+|++|||||+.-+.. .+.. ...++++--||-==-||+. .++|.++
T Consensus 198 d~LVvIGGDgS~t~A~~LaEy~~~--~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdT 252 (1328)
T PTZ00468 198 HGLVVIGGDDSNTNAAVLAEYFKR--NSSSTVVVGCPKTIDGDLKNEVIETSFGYDT 252 (1328)
T ss_pred CEEEEECCchHHHHHHHHHHHHHh--cCCCeeEEEEeEEEcCCCCCCcCCCCCCHHH
Confidence 57999999999864432 2222 1245888889987799998 3666663
No 147
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=22.18 E-value=2.4e+02 Score=31.63 Aligned_cols=42 Identities=14% Similarity=0.088 Sum_probs=28.5
Q ss_pred cEEEEEcCchHHHHHHH---HHhhccCCCCCcEEEeeCCCCCchhhh
Q 011293 105 LRIIVAGGDGTAGWLLG---VVCDLKLSHPPPIATVPLGTGNNLPFA 148 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl~---~l~~~~~~~~~plgiIP~GTGNDfArs 148 (489)
+.+|++|||||..-+.. .+.. ...++++--||-==-||+.-.
T Consensus 192 d~LViIGGddS~~~A~~Lae~~~~--~g~~i~VIGVPKTIDNDL~~t 236 (568)
T PLN02251 192 DGLVVIGGDDSNTNACLLAEYFRA--KNLKTRVIGCPKTIDGDLKSK 236 (568)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHh--cCCCeeEEEeCceEeCCCCCC
Confidence 57999999999865442 2222 123577777887668998753
No 148
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=21.91 E-value=42 Score=35.81 Aligned_cols=18 Identities=28% Similarity=0.206 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCCccc
Q 011293 449 QHGSEDCQSDDDSSHGGE 466 (489)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~ 466 (489)
.++.+||+|+.|||+|.|
T Consensus 501 ysdseDdssefDe~dW~d 518 (518)
T KOG1830|consen 501 YSDSEDDSSEFDEDDWSD 518 (518)
T ss_pred hccCcccccccccccccC
Confidence 344455566888888975
No 149
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=21.48 E-value=1.5e+02 Score=36.51 Aligned_cols=79 Identities=11% Similarity=0.289 Sum_probs=44.8
Q ss_pred cEEEEEcCchHHHHHHH---HHhhcc---CCCCCcEEEeeCCCCCchhh-----hccCCCCCCCCChHHHHHHHHHHHcC
Q 011293 105 LRIIVAGGDGTAGWLLG---VVCDLK---LSHPPPIATVPLGTGNNLPF-----AFGWGKKNPGTDRHAVEQFLRHVMNA 173 (489)
Q Consensus 105 ~~IIv~GGDGTv~~vl~---~l~~~~---~~~~~plgiIP~GTGNDfAr-----sLG~~~~~~~~~~~~l~~~l~~i~~a 173 (489)
+.+|++|||||+.-..- .+.+.+ ....+++--||-==-||+.. ++|..+ ......+++..+..-
T Consensus 802 d~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDT-----A~~~~se~Ign~l~D 876 (1328)
T PTZ00468 802 RAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDS-----VTKSISTLVGNLLTD 876 (1328)
T ss_pred CEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHh-----HHHHHHHHHHHHHHH
Confidence 57999999999874332 222111 12468899999888999986 444442 112222344233332
Q ss_pred ceeeEeEEEEEeecc
Q 011293 174 KEMKIDNWHILMRLR 188 (489)
Q Consensus 174 ~~~~iD~w~i~~~~~ 188 (489)
.......|.+.-.|.
T Consensus 877 tass~kr~~fVevMG 891 (1328)
T PTZ00468 877 SASATKYWYFMKMIG 891 (1328)
T ss_pred HHhcCCcEEEEEECC
Confidence 223345677755553
No 150
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=21.19 E-value=4.8e+02 Score=27.43 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=27.9
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchh
Q 011293 103 ERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLP 146 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfA 146 (489)
+=+.+|++|||||..-..- |.+ .-..++-=||-==-||++
T Consensus 94 gId~LvvIGGDgS~~gA~~-Lae---~~~i~vVGvPkTIDNDi~ 133 (347)
T COG0205 94 GIDALVVIGGDGSYTGAAL-LAE---EGGIPVVGVPKTIDNDIS 133 (347)
T ss_pred CCCEEEEECCCChHHHHHH-HHH---hcCCcEEecCCCccCCCc
Confidence 3468999999999875442 222 123677778877789988
No 151
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=21.11 E-value=4.8e+02 Score=30.50 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=30.4
Q ss_pred CcEEEEEcCchHHHHHHHHH---hhccCCCCCcEEEeeCCCCCchh
Q 011293 104 RLRIIVAGGDGTAGWLLGVV---CDLKLSHPPPIATVPLGTGNNLP 146 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l---~~~~~~~~~plgiIP~GTGNDfA 146 (489)
=+.+|++|||||+.-+...- ..+ ....+|+-.||.==-||++
T Consensus 479 Id~LivIGGdgs~~~a~~L~~~~~~y-~~~~i~vVgIPkTIDNDv~ 523 (762)
T cd00764 479 IDGLIIVGGFEAYKGLLQLREAREQY-EEFCIPMVLIPATVSNNVP 523 (762)
T ss_pred CCEEEEECChhHHHHHHHHHHHHhhC-CCCCccEEEecccccCCCC
Confidence 35899999999987654322 111 1246899999999999986
No 152
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=20.69 E-value=3.4e+02 Score=28.54 Aligned_cols=86 Identities=22% Similarity=0.232 Sum_probs=48.9
Q ss_pred CCCChhhHHHH-HHHHhccC--CeEEEEccCchhHHHHHHHHHHHh-----hhccchhhhhhcCCcEEEEEcCchHHHHH
Q 011293 48 GGQLGGDLLVT-YRSLLNKN--QVFDVGEEAPDKALRRIYLNLETL-----KANGDAYATQIQERLRIIVAGGDGTAGWL 119 (489)
Q Consensus 48 G~~~g~~~l~~-~~~~L~~~--~V~dl~~~~p~~~l~~l~~~l~~l-----~~~~~~~a~~~~~~~~IIv~GGDGTv~~v 119 (489)
||.+|.+.+.. +.+.+... ++.-+...++.+ ++++...+.++ ....++++.-....+.||.=.|=.||.|+
T Consensus 190 GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~-~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADLvIsRaGa~Ti~E~ 268 (357)
T COG0707 190 GGSQGAKALNDLVPEALAKLANRIQVIHQTGKND-LEELKSAYNELGVVRVLPFIDDMAALLAAADLVISRAGALTIAEL 268 (357)
T ss_pred CCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcch-HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccEEEeCCcccHHHHH
Confidence 88888776555 33333211 232222244444 33344443222 11123444444566889999999999998
Q ss_pred HHHHhhccCCCCCcEEEeeCCCC
Q 011293 120 LGVVCDLKLSHPPPIATVPLGTG 142 (489)
Q Consensus 120 l~~l~~~~~~~~~plgiIP~GTG 142 (489)
+.. ..|.-+||+.-+
T Consensus 269 ~a~--------g~P~IliP~p~~ 283 (357)
T COG0707 269 LAL--------GVPAILVPYPPG 283 (357)
T ss_pred HHh--------CCCEEEeCCCCC
Confidence 852 578888888766
No 153
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=20.43 E-value=1.1e+02 Score=28.72 Aligned_cols=33 Identities=33% Similarity=0.376 Sum_probs=23.3
Q ss_pred CcEEEEEcCchHHHHHHHHHhh--ccCCCCCcEEEe
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCD--LKLSHPPPIATV 137 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~--~~~~~~~plgiI 137 (489)
+..|+.-||=||+.|++..+.- +.. +..|+.++
T Consensus 98 da~I~lPGG~GTL~El~e~~~~~qlg~-~~kPiil~ 132 (178)
T TIGR00730 98 DAFIAMPGGFGTLEELFEVLTWAQLGI-HQKPIILF 132 (178)
T ss_pred CEEEEcCCCcchHHHHHHHHHHHHcCC-CCCCEEEE
Confidence 4467788999999999988742 333 34566666
No 154
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=20.42 E-value=1e+02 Score=27.61 Aligned_cols=59 Identities=24% Similarity=0.255 Sum_probs=32.5
Q ss_pred EEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcC
Q 011293 108 IVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNA 173 (489)
Q Consensus 108 Iv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a 173 (489)
..++|+.|-+ ++..+...-...++.+-+|=+|| ||+.+. ++. ......+.++++.+.+.
T Consensus 42 ~g~~G~~~~~-~~~~l~~~~~~~~pd~v~i~~G~-ND~~~~--~~~---~~~~~~l~~li~~~~~~ 100 (177)
T cd01822 42 AGVSGDTTAG-GLARLPALLAQHKPDLVILELGG-NDGLRG--IPP---DQTRANLRQMIETAQAR 100 (177)
T ss_pred cCcCCcccHH-HHHHHHHHHHhcCCCEEEEeccC-cccccC--CCH---HHHHHHHHHHHHHHHHC
Confidence 3667776654 23322211112467899999995 997542 221 12234667777776543
No 155
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=20.33 E-value=3.4e+02 Score=25.34 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=39.8
Q ss_pred CcEEEEEcCchHHHHHHHHHhhccCCCC-CcEEEe------------eCCC--CCc---hhhhccCCCCCCCCChHHHHH
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDLKLSHP-PPIATV------------PLGT--GNN---LPFAFGWGKKNPGTDRHAVEQ 165 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~~~~~~-~plgiI------------P~GT--GND---fArsLG~~~~~~~~~~~~l~~ 165 (489)
...||++-|||++..-++.|........ +.+-+| +..+ .-| +|+++||.....-...+.++.
T Consensus 59 ~~~Vv~i~GDG~f~m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~G~~~~~~v~~~~~l~~ 138 (181)
T TIGR03846 59 DRTVIVIDGDGSLLMNLGVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAAGIRNVEKVADEEELRD 138 (181)
T ss_pred CCcEEEEEcchHHHhhhhHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHCCCCeEEEeCCHHHHHH
Confidence 4579999999998855555432111111 222222 2222 113 678999874220133556777
Q ss_pred HHHHHHcCceeeEeE
Q 011293 166 FLRHVMNAKEMKIDN 180 (489)
Q Consensus 166 ~l~~i~~a~~~~iD~ 180 (489)
+++.+......-|++
T Consensus 139 al~a~~~~~p~li~v 153 (181)
T TIGR03846 139 ALKALAMKGPTFIHV 153 (181)
T ss_pred HHHHHcCCCCEEEEE
Confidence 776333333444554
Done!