Query 011293
Match_columns 489
No_of_seqs 180 out of 1533
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:09:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 5.8E-45 2E-49 368.1 27.8 286 33-434 5-300 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 2.3E-40 7.9E-45 338.8 29.2 285 36-435 24-319 (337)
3 2bon_A Lipid kinase; DAG kinas 100.0 4.2E-40 1.5E-44 336.4 26.3 284 36-434 29-319 (332)
4 2an1_A Putative kinase; struct 99.4 3.2E-12 1.1E-16 127.6 15.0 114 36-175 5-121 (292)
5 1yt5_A Inorganic polyphosphate 99.3 8.7E-12 3E-16 122.7 9.9 96 38-175 2-98 (258)
6 1u0t_A Inorganic polyphosphate 99.1 4.3E-10 1.5E-14 113.3 14.9 125 36-176 4-134 (307)
7 2i2c_A Probable inorganic poly 99.0 1.4E-09 4.9E-14 107.6 12.4 94 38-176 2-96 (272)
8 3afo_A NADH kinase POS5; alpha 97.9 3.4E-05 1.1E-09 79.9 10.2 150 11-178 15-176 (388)
9 1z0s_A Probable inorganic poly 94.7 0.045 1.5E-06 54.0 6.6 75 38-146 31-106 (278)
10 3pfn_A NAD kinase; structural 92.7 0.73 2.5E-05 47.0 11.5 140 19-180 22-171 (365)
11 3hl0_A Maleylacetate reductase 81.7 1.8 6.3E-05 43.6 6.1 105 14-139 7-119 (353)
12 3jzd_A Iron-containing alcohol 81.6 1.7 5.7E-05 44.1 5.7 105 14-139 9-121 (358)
13 1o2d_A Alcohol dehydrogenase, 81.6 8.7 0.0003 38.8 11.1 119 12-146 13-157 (371)
14 1oj7_A Hypothetical oxidoreduc 79.9 7.9 0.00027 39.6 10.2 121 14-148 26-170 (408)
15 3ox4_A Alcohol dehydrogenase 2 77.0 5.8 0.0002 40.3 8.1 117 14-146 5-147 (383)
16 3uhj_A Probable glycerol dehyd 76.8 3.5 0.00012 42.2 6.4 106 13-140 26-139 (387)
17 2gru_A 2-deoxy-scyllo-inosose 74.0 4.5 0.00015 41.0 6.3 93 35-139 33-128 (368)
18 1jq5_A Glycerol dehydrogenase; 69.8 16 0.00056 36.6 9.3 106 13-139 5-118 (370)
19 3okf_A 3-dehydroquinate syntha 68.2 11 0.00036 38.7 7.5 93 35-139 61-157 (390)
20 3ce9_A Glycerol dehydrogenase; 65.4 16 0.00053 36.5 8.1 110 14-143 8-124 (354)
21 4grd_A N5-CAIR mutase, phospho 65.2 75 0.0026 28.7 11.6 89 36-142 12-101 (173)
22 1pfk_A Phosphofructokinase; tr 64.6 13 0.00046 36.9 7.2 38 104-146 95-132 (320)
23 1vlj_A NADH-dependent butanol 64.4 31 0.0011 35.1 10.2 119 14-146 17-160 (407)
24 3iv7_A Alcohol dehydrogenase I 63.5 9.1 0.00031 38.7 5.9 103 17-139 13-120 (364)
25 3clh_A 3-dehydroquinate syntha 63.3 12 0.00042 37.2 6.8 93 36-140 26-120 (343)
26 3bfj_A 1,3-propanediol oxidore 61.6 26 0.00089 35.3 9.0 120 14-147 7-152 (387)
27 1sg6_A Pentafunctional AROM po 58.6 5 0.00017 41.0 2.9 41 104-146 106-148 (393)
28 1zxx_A 6-phosphofructokinase; 58.2 14 0.00049 36.7 6.1 38 104-146 94-131 (319)
29 3qbe_A 3-dehydroquinate syntha 54.6 15 0.00053 37.2 5.8 90 37-139 44-137 (368)
30 1ta9_A Glycerol dehydrogenase; 53.3 28 0.00097 36.1 7.7 107 13-139 64-177 (450)
31 1ujn_A Dehydroquinate synthase 53.1 22 0.00074 35.5 6.6 90 36-139 28-118 (348)
32 1xah_A Sadhqs, 3-dehydroquinat 51.3 37 0.0013 33.8 8.0 90 37-139 32-124 (354)
33 4a3s_A 6-phosphofructokinase; 50.9 22 0.00076 35.3 6.1 44 104-152 94-140 (319)
34 3kuu_A Phosphoribosylaminoimid 47.4 1E+02 0.0035 27.9 9.3 91 31-138 6-98 (174)
35 2hig_A 6-phospho-1-fructokinas 46.2 24 0.00082 37.2 5.7 41 104-146 190-233 (487)
36 3hbm_A UDP-sugar hydrolase; PS 45.0 54 0.0018 31.7 7.8 36 95-139 217-252 (282)
37 3lp6_A Phosphoribosylaminoimid 44.6 1.4E+02 0.005 26.8 9.9 85 37-143 8-97 (174)
38 3oow_A Phosphoribosylaminoimid 43.3 1.4E+02 0.0049 26.7 9.5 86 39-142 8-94 (166)
39 1xmp_A PURE, phosphoribosylami 42.8 83 0.0028 28.3 7.9 78 48-142 19-100 (170)
40 3ors_A N5-carboxyaminoimidazol 41.6 1E+02 0.0034 27.6 8.2 87 38-142 5-92 (163)
41 2ywx_A Phosphoribosylaminoimid 41.5 60 0.002 28.9 6.7 72 52-140 11-83 (157)
42 4hf7_A Putative acylhydrolase; 39.8 16 0.00053 33.0 2.8 61 108-172 56-116 (209)
43 3rf7_A Iron-containing alcohol 39.4 81 0.0028 31.8 8.3 35 104-139 110-159 (375)
44 1rrm_A Lactaldehyde reductase; 38.8 59 0.002 32.6 7.2 117 14-146 5-149 (386)
45 1o4v_A Phosphoribosylaminoimid 37.3 1.1E+02 0.0037 27.9 7.9 81 48-142 21-102 (183)
46 3hno_A Pyrophosphate-dependent 34.4 61 0.0021 33.4 6.5 42 104-146 105-148 (419)
47 1u11_A PURE (N5-carboxyaminoim 33.1 1.5E+02 0.0052 26.9 8.1 85 37-142 22-110 (182)
48 2f48_A Diphosphate--fructose-6 32.9 41 0.0014 36.0 5.0 47 104-152 167-221 (555)
49 3o8l_A 6-phosphofructokinase, 29.7 59 0.002 36.2 5.7 42 104-146 490-534 (762)
50 4b4k_A N5-carboxyaminoimidazol 29.7 2E+02 0.007 26.0 8.3 89 34-140 19-109 (181)
51 3dc7_A Putative uncharacterize 29.4 32 0.0011 31.0 3.1 66 105-173 55-126 (232)
52 3trh_A Phosphoribosylaminoimid 29.1 2.9E+02 0.01 24.7 9.2 81 38-140 8-93 (169)
53 3lhl_A Putative agmatinase; pr 28.9 1.4E+02 0.0048 28.7 7.8 42 103-148 87-129 (287)
54 3gw6_A Endo-N-acetylneuraminid 27.4 19 0.00065 34.9 1.1 13 105-117 47-59 (275)
55 2x9a_A Attachment protein G3P; 26.8 16 0.00054 27.5 0.4 11 106-116 40-50 (65)
56 2q0q_A ARYL esterase; SGNH hyd 24.4 47 0.0016 29.2 3.3 39 132-174 84-122 (216)
57 3nio_A Guanidinobutyrase; PA14 24.3 1.5E+02 0.005 29.0 7.1 41 103-147 118-159 (319)
58 3m1r_A Formimidoylglutamase; s 24.3 1.8E+02 0.006 28.5 7.7 38 106-147 122-160 (322)
59 3dci_A Arylesterase; SGNH_hydr 23.9 88 0.003 28.2 5.1 37 133-173 103-139 (232)
60 2h31_A Multifunctional protein 23.6 3E+02 0.01 28.2 9.4 81 37-139 266-352 (425)
61 3niq_A 3-guanidinopropionase; 21.4 2.4E+02 0.0081 27.7 8.0 41 103-148 115-156 (326)
62 1ivn_A Thioesterase I; hydrola 20.9 64 0.0022 27.9 3.3 58 109-173 41-98 (190)
63 2lnd_A De novo designed protei 20.8 1.7E+02 0.0059 23.0 5.3 58 19-81 29-93 (112)
64 3rg8_A Phosphoribosylaminoimid 20.7 4.4E+02 0.015 23.3 8.8 65 52-124 14-80 (159)
65 3o8l_A 6-phosphofructokinase, 20.6 1.7E+02 0.0058 32.5 7.2 43 104-146 110-170 (762)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=100.00 E-value=5.8e-45 Score=368.12 Aligned_cols=286 Identities=18% Similarity=0.169 Sum_probs=207.8
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEE
Q 011293 33 DVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVA 110 (489)
Q Consensus 33 ~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~ 110 (489)
..++++++||+||+||++++.+.++.++..|....+ +++.. +.++++.+ +++.+. .+.+.||++
T Consensus 5 ~~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~-~~~~~~-------------~~~d~vv~~ 70 (304)
T 3s40_A 5 KTKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATK-YCQEFA-------------SKVDLIIVF 70 (304)
T ss_dssp CCSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHH-HHHHHT-------------TTCSEEEEE
T ss_pred cCCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHH-HHHHhh-------------cCCCEEEEE
Confidence 346789999999999999999999999999987655 55544 56777654 544331 245789999
Q ss_pred cCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCC
Q 011293 111 GGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAP 190 (489)
Q Consensus 111 GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~ 190 (489)
|||||||+|++++... ..++|||+||+||||||||+|||+. ++.++++.|.+++.+.+|+|++.
T Consensus 71 GGDGTl~~v~~~l~~~--~~~~~l~iiP~Gt~N~~ar~lg~~~--------~~~~a~~~i~~g~~~~iDlg~v~------ 134 (304)
T 3s40_A 71 GGDGTVFECTNGLAPL--EIRPTLAIIPGGTCNDFSRTLGVPQ--------NIAEAAKLITKEHVKPVDVAKAN------ 134 (304)
T ss_dssp ECHHHHHHHHHHHTTC--SSCCEEEEEECSSCCHHHHHTTCCS--------SHHHHHHHHTTCCEEEEEEEEET------
T ss_pred ccchHHHHHHHHHhhC--CCCCcEEEecCCcHHHHHHHcCCCc--------cHHHHHHHHHhCCeEEEEEEEEC------
Confidence 9999999999999742 3679999999999999999999995 36778889999999999999872
Q ss_pred CCCCCCCCCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHH
Q 011293 191 KEGSCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAK 270 (489)
Q Consensus 191 ~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~ 270 (489)
.+||+|++|+||||+|++.+++.++ +..|+++|++
T Consensus 135 -------------------------------------~~~F~~~~~~G~da~v~~~~~~~~k--------~~~G~~~Y~~ 169 (304)
T 3s40_A 135 -------------------------------------GQHFLNFWGIGLVSEVSNNIDAEEK--------AKLGKIGYYL 169 (304)
T ss_dssp -------------------------------------TEEESSEEEEC--------------------------CHHHHT
T ss_pred -------------------------------------CEEEEEEEeehHHHHHHHhcCHHHh--------hcCCchHHHH
Confidence 2589999999999999998875432 3457899999
Q ss_pred HhhhcccccccccCCCCcCccceEEEEEEecCCeEEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCc
Q 011293 271 LGCTQGWFFASLVHPSSHNIAQLAKVKVMKKCGQWRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYV 350 (489)
Q Consensus 271 ~g~~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg~~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~ 350 (489)
.++++ |+. ++++ .+++++ ||+. ++ ..+.+++|+|++|||||+.+ +|.+++
T Consensus 170 ~~l~~------l~~--~~~~--~~~i~~---dg~~--~~--~~~~~v~v~N~~~~Ggg~~~-------------~p~a~~ 219 (304)
T 3s40_A 170 STIRT------VKN--AETF--PVKITY---DGQV--YE--DEAVLVMVGNGEYLGGIPSF-------------IPNVKC 219 (304)
T ss_dssp TTC--------------CCE--EEEEEE---TTEE--EE--EEEEEEEEECSSEETTEECS-------------STTCCT
T ss_pred HHHHH------Hhh--cCCc--eEEEEE---CCEE--EE--eEEEEEEEECCCcCCCCccc-------------CCCCcC
Confidence 99987 542 2332 344555 7863 22 24568999999999999988 788999
Q ss_pred CCCcEEEEEecchhH--HHHHH--ccC----CCceeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEEEE
Q 011293 351 DDGLLEVVGFRDAWH--GLVLY--APS----GHGTRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVEIS 422 (489)
Q Consensus 351 dDG~LeVv~~~~~~~--~~~l~--~~~----g~~~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~ 422 (489)
+||+|||+++++... +..++ ... ...+++.++++++|+..+ ++++|+|||++... |++|+|.
T Consensus 220 ~DG~Ldv~~v~~~~~~~l~~l~~~~~~g~~~~~~v~~~~~~~v~i~~~~----~~~~~~DGE~~~~~------p~~i~v~ 289 (304)
T 3s40_A 220 DDGTLDIFVVKSTGIQAFKDYIGKKLFEDSNENDIFHVKAKSIHIETEE----EKEVDTDGESSLHT------PCQIELL 289 (304)
T ss_dssp TSSCEEEEEEETTCHHHHHHHTTCCCSSCCCTTTEEEEEESEEEEEESS----CCEEEEC--CCEES------SEEEEEE
T ss_pred CCCEEEEEEEccCCHHHHHHHHHHHhcCCCCCCcEEEEEccEEEEEeCC----CcEEEeCCCCCCCc------eEEEEEE
Confidence 999999999998743 22221 111 245788999999999875 89999999998753 7999999
Q ss_pred eCCeeeEEecCC
Q 011293 423 HHGQVNILATRD 434 (489)
Q Consensus 423 ~~~~v~~L~~~~ 434 (489)
+ ++++|++++.
T Consensus 290 p-~al~v~~p~~ 300 (304)
T 3s40_A 290 Q-GHFTMIYNPA 300 (304)
T ss_dssp E-EEEEEECCTT
T ss_pred C-CeEEEEechh
Confidence 7 6999999753
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=100.00 E-value=2.3e-40 Score=338.80 Aligned_cols=285 Identities=19% Similarity=0.147 Sum_probs=212.7
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCc
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGD 113 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGD 113 (489)
+++++||+||+||++++.++++.+++.|...++ +.+.. +.++++.+ +.+.+. ..+.+.|||+|||
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~-~~~~~~------------~~~~d~vvv~GGD 90 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATL-EAERAM------------HENYDVLIAAGGD 90 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHH-HHHHHT------------TTTCSEEEEEECH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHH-HHHHHh------------hcCCCEEEEEcCc
Confidence 568999999999999999999999999988776 55544 45556543 433221 1245799999999
Q ss_pred hHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCCC
Q 011293 114 GTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKEG 193 (489)
Q Consensus 114 GTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~g 193 (489)
|||++|++++.. ....+|||+||+||+|||||+||++. ++.++++.|.+++.+.+|+|++.
T Consensus 91 GTv~~v~~~l~~--~~~~~pl~iIP~GT~N~lAr~Lg~~~--------~~~~al~~i~~g~~~~iD~g~v~--------- 151 (337)
T 2qv7_A 91 GTLNEVVNGIAE--KPNRPKLGVIPMGTVNDFGRALHIPN--------DIMGALDVIIEGHSTKVDIGKMN--------- 151 (337)
T ss_dssp HHHHHHHHHHTT--CSSCCEEEEEECSSCCHHHHHTTCCS--------SHHHHHHHHHHTCEEEEEEEEET---------
T ss_pred hHHHHHHHHHHh--CCCCCcEEEecCCcHhHHHHHcCCCC--------CHHHHHHHHHcCCcEEEEEEEEC---------
Confidence 999999999954 24689999999999999999999995 36678888999999999999872
Q ss_pred CCCCCCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHhh
Q 011293 194 SCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLGC 273 (489)
Q Consensus 194 ~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g~ 273 (489)
.++|+|++++|+||+|++.++..++ +..++++|...++
T Consensus 152 ----------------------------------~r~fl~~~~~G~~a~v~~~~~~~~k--------~~~G~~~Y~~~~l 189 (337)
T 2qv7_A 152 ----------------------------------NRYFINLAAGGQLTQVSYETPSKLK--------SIVGPFAYYIKGF 189 (337)
T ss_dssp ----------------------------------TEEESSEEEEECBCC---------------------CGGGSCCCTT
T ss_pred ----------------------------------CEEEEEEeeecccHHHHHHhhHHHH--------hccChHHHHHHHH
Confidence 2589999999999999988775432 3456899999888
Q ss_pred hcccccccccCCCCcCccceEEEEEEecCCeEEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCCC
Q 011293 274 TQGWFFASLVHPSSHNIAQLAKVKVMKKCGQWRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDDG 353 (489)
Q Consensus 274 ~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg~~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dDG 353 (489)
+. ++. .+.+ .+++.+ ||+. ++ ....++++.|++++|||+.+ +|.++++||
T Consensus 190 ~~------l~~--~~~~--~~~i~~---dg~~--~~--~~~~~v~v~n~~~~gGg~~i-------------~P~a~~~DG 239 (337)
T 2qv7_A 190 EM------LPQ--MKAV--DLRIEY---DGNV--FQ--GEALLFFLGLTNSMAGFEKL-------------VPDAKLDDG 239 (337)
T ss_dssp TT------GGG--BCCE--EEEEEE---TTEE--EE--EEEEEEEEESSCCCSSCSCS-------------STTCCSSSS
T ss_pred HH------HHh--CCCc--cEEEEE---CCEE--EE--eeEEEEEEECCCCCCCCCcc-------------CCCCcCCCC
Confidence 87 432 2222 344544 7874 22 24567999999999999988 688999999
Q ss_pred cEEEEEecchh--HHHHH--HccCC-----CceeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEEEEeC
Q 011293 354 LLEVVGFRDAW--HGLVL--YAPSG-----HGTRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVEISHH 424 (489)
Q Consensus 354 ~LeVv~~~~~~--~~~~l--~~~~g-----~~~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~~ 424 (489)
.|+|+++++.. .++.+ .+..| ..+++.++++++|+..+ ++++++|||.+... |+.|++.+
T Consensus 240 ~ldv~~v~~~~~~~l~~~~~~v~~g~~~~~~~v~~~~~~~i~i~~~~----~~~~~iDGE~~~~~------~i~i~v~p- 308 (337)
T 2qv7_A 240 YFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFT----DLQLNVDGEYGGKL------PANFLNLE- 308 (337)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEEESEEEEECSS----CCEEEETTEEEEES------CEEEEEEE-
T ss_pred eEEEEEEccCCHHHHHHHHHHHhcCCccCCCCEEEEEeeEEEEEECC----CCeEEECCCcCCCC------cEEEEEEc-
Confidence 99999999873 23222 23333 45788999999988654 78999999998753 79999997
Q ss_pred CeeeEEecCCC
Q 011293 425 GQVNILATRDC 435 (489)
Q Consensus 425 ~~v~~L~~~~~ 435 (489)
+.++|+++...
T Consensus 309 ~~l~v~~p~~~ 319 (337)
T 2qv7_A 309 RHIDVFAPNDI 319 (337)
T ss_dssp EEEEEECCTTS
T ss_pred CeEEEEecCcc
Confidence 59999997543
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=100.00 E-value=4.2e-40 Score=336.41 Aligned_cols=284 Identities=18% Similarity=0.172 Sum_probs=208.2
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCc
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGD 113 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGD 113 (489)
+++++||+||.||++ +.++.+.+.|....+ +.+.. +.++++.+ +.+.+. ..+.+.|||+|||
T Consensus 29 ~~~~~vi~Np~sg~~---~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~-~~~~~~------------~~~~d~vvv~GGD 92 (332)
T 2bon_A 29 FPASLLILNGKSTDN---LPLREAIMLLREEGMTIHVRVTWEKGDAAR-YVEEAR------------KFGVATVIAGGGD 92 (332)
T ss_dssp -CCEEEEECSSSTTC---HHHHHHHHHHHTTTCCEEEEECCSTTHHHH-HHHHHH------------HHTCSEEEEEESH
T ss_pred cceEEEEECCCCCCC---chHHHHHHHHHHcCCcEEEEEecCcchHHH-HHHHHH------------hcCCCEEEEEccc
Confidence 578999999999977 567788888877665 55544 44566543 333221 0245799999999
Q ss_pred hHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCceeeEeEEEEEeeccCCCCC
Q 011293 114 GTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEMKIDNWHILMRLRAPKEG 193 (489)
Q Consensus 114 GTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~~iD~w~i~~~~~~~~~g 193 (489)
|||++|++++........+|||+||+||+|||||+|||+. ++.++++.|.+++.+.+|+|+++
T Consensus 93 GTl~~v~~~l~~~~~~~~~plgiiP~Gt~N~fa~~l~i~~--------~~~~al~~i~~g~~~~iDlg~v~--------- 155 (332)
T 2bon_A 93 GTINEVSTALIQCEGDDIPALGILPLGTANDFATSVGIPE--------ALDKALKLAIAGDAIAIDMAQVN--------- 155 (332)
T ss_dssp HHHHHHHHHHHHCCSSCCCEEEEEECSSSCHHHHHTTCCS--------SHHHHHHHHHHSEEEEEEEEEET---------
T ss_pred hHHHHHHHHHhhcccCCCCeEEEecCcCHHHHHHhcCCCC--------CHHHHHHHHHcCCeEEeeEEEEC---------
Confidence 9999999999743223678999999999999999999984 36677888899999999999872
Q ss_pred CCCCCCCCCCCccccccccccccccccccCCcceeceEEEEeeccchHHHhhHHHhhhccCchhhhccccchhhHHHHhh
Q 011293 194 SCDPIAPLELPHSLHAFGRVSATDELNKEGYHTFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLVNQSTYAKLGC 273 (489)
Q Consensus 194 ~~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~F~N~fsiG~DA~V~~~~~~~R~~~p~~~k~rl~nkl~Y~~~g~ 273 (489)
+ +++|+|++|+|+||+|++.+++.+ | +..|+++|++.++
T Consensus 156 -----------------------------~----r~~fl~~~~~G~da~v~~~~~~~~-------k-~~~G~~~Y~~~~l 194 (332)
T 2bon_A 156 -----------------------------K----QTCFINMATGGFGTRITTETPEKL-------K-AALGSVSYIIHGL 194 (332)
T ss_dssp -----------------------------T----SCEESSEEEEEEEEEC------------------CCHHHHHHHHHT
T ss_pred -----------------------------C----ceEEEEEEeECccHHHHHHhhHHh-------H-hcccHHHHHHHHH
Confidence 0 138999999999999998766433 2 3447999999998
Q ss_pred hcccccccccCCCCcCccceEEEEEEecCCeEEEEeccCceeEEEEEcCCCCCCCcCCCCCCCCCCCCCCCCCCCCcCCC
Q 011293 274 TQGWFFASLVHPSSHNIAQLAKVKVMKKCGQWRDLEIPSSIRSIVCLNLPSFSGGLNPWGTPNTKKSQYKDFTPPYVDDG 353 (489)
Q Consensus 274 ~~~~~~~~l~~~~~k~~~~~~~i~v~~~dg~~~~l~~~~~~~~i~v~N~~s~gGG~~~w~~~~~~~~~~~~~p~a~~dDG 353 (489)
+. ++. .+.+ .+++++ ||+. ++ ....+++++|++|+|||+.+ +|.++++||
T Consensus 195 ~~------l~~--~~~~--~~~i~~---dg~~--~~--~~~~~v~v~N~~~~ggg~~i-------------~P~a~~~DG 244 (332)
T 2bon_A 195 MR------MDT--LQPD--RCEIRG---ENFH--WQ--GDALVIGIGNGRQAGGGQQL-------------CPNALINDG 244 (332)
T ss_dssp SC------EEE--EECE--EEEEEE---TTEE--EE--EEESEEEEESSSCBTTTBCS-------------CTTCCTTSS
T ss_pred HH------Hhh--CCCe--eEEEEE---CCEE--EE--EEEEEEEEECCCccCCCccc-------------CCCCCCCCC
Confidence 87 331 2222 334444 7763 22 24567899999999999988 688999999
Q ss_pred cEEEEEecchhHHHHH--HccCC---CceeEEEeeEEEEEEecCCCCccccccCCcccCCCCCCCCCcEEEEEEeCCeee
Q 011293 354 LLEVVGFRDAWHGLVL--YAPSG---HGTRLAQAHRICFEFHKGGADHTFMRIDGEPWKQPLPVDDDTVVVEISHHGQVN 428 (489)
Q Consensus 354 ~LeVv~~~~~~~~~~l--~~~~g---~~~~l~q~~~i~I~~~~~~~~~~~~qiDGE~~~~~~~~~~~p~~ieI~~~~~v~ 428 (489)
+|||+++++..+++.+ .+..| ..+++.++++|+|+..+ ++++|+|||++... |++|++.+ ++++
T Consensus 245 ~Ldv~iv~~~~~~l~~~~~~~~g~~~~~v~~~~~~~i~I~~~~----~~~~~iDGE~~~~~------~~~i~v~p-~al~ 313 (332)
T 2bon_A 245 LLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWFDIQAPH----DITFNLDGEPLSGQ------NFHIEILP-AALR 313 (332)
T ss_dssp CEEEEEECCSSCCHHHHHHHHTTCCCTTEEEEEESEEEEEEEE----EEEEEETTEEEEEE------EEEEEEEE-EEEE
T ss_pred eEEEEEECCHHHHHHHHHHHHcCCCCCcEEEEEeeEEEEEECC----CCeEEecCCCCCCc------eEEEEEEC-CeeE
Confidence 9999999987322221 12233 55788999999998865 78999999998753 79999997 5999
Q ss_pred EEecCC
Q 011293 429 ILATRD 434 (489)
Q Consensus 429 ~L~~~~ 434 (489)
|+++..
T Consensus 314 vl~p~~ 319 (332)
T 2bon_A 314 CRLPPD 319 (332)
T ss_dssp EEECTT
T ss_pred EEeCCC
Confidence 999754
No 4
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=99.39 E-value=3.2e-12 Score=127.64 Aligned_cols=114 Identities=16% Similarity=0.011 Sum_probs=67.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhh--hhcCCcEEEEEcC
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYAT--QIQERLRIIVAGG 112 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~--~~~~~~~IIv~GG 112 (489)
+++++||+||.++ ...+.+..+.+.|...++ +.+..+. + ..+. ... ...++. ...+.+.||++||
T Consensus 5 mkki~ii~np~~~--~~~~~~~~i~~~l~~~g~~v~~~~~~---~-----~~~~-~~~-~~~~~~~~~~~~~D~vi~~GG 72 (292)
T 2an1_A 5 FKCIGIVGHPRHP--TALTTHEMLYRWLCDQGYEVIVEQQI---A-----HELQ-LKN-VPTGTLAEIGQQADLAVVVGG 72 (292)
T ss_dssp CCEEEEECC---------CHHHHHHHHHHHTTCEEEEEHHH---H-----HHTT-CSS-CCEECHHHHHHHCSEEEECSC
T ss_pred CcEEEEEEcCCCH--HHHHHHHHHHHHHHHCCCEEEEecch---h-----hhcc-ccc-ccccchhhcccCCCEEEEEcC
Confidence 5789999999864 445678888888877655 3333211 0 0000 000 000000 0123579999999
Q ss_pred chHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCce
Q 011293 113 DGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKE 175 (489)
Q Consensus 113 DGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~ 175 (489)
|||++++++.+... ..|.||| |+||.|+|++ ++ +. .+.++++.+.+++.
T Consensus 73 DGT~l~a~~~~~~~---~~P~lGI-~~Gt~gfla~-~~-~~--------~~~~al~~i~~g~~ 121 (292)
T 2an1_A 73 DGNMLGAARTLARY---DINVIGI-NRGNLGFLTD-LD-PD--------NALQQLSDVLEGRY 121 (292)
T ss_dssp HHHHHHHHHHHTTS---SCEEEEB-CSSSCCSSCC-BC-TT--------SHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHhhcC---CCCEEEE-ECCCcccCCc-CC-HH--------HHHHHHHHHHcCCC
Confidence 99999999998741 2344776 8999888886 44 42 47778888887765
No 5
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=99.27 E-value=8.7e-12 Score=122.67 Aligned_cols=96 Identities=21% Similarity=0.224 Sum_probs=67.8
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhccCCeEEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHHH
Q 011293 38 PVLVFINSKSGGQLGGDLLVTYRSLLNKNQVFDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTAG 117 (489)
Q Consensus 38 ~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~ 117 (489)
+++||+||.||.+ +.+++..+.+.|. -+++.. . + + .+ ..+.+.||++|||||++
T Consensus 2 ki~ii~Np~~~~~-~~~~~~~i~~~l~---~~~~~~-~--~--~----~~-------------~~~~D~vv~~GGDGTll 55 (258)
T 1yt5_A 2 KIAILYREEREKE-GEFLKEKISKEHE---VIEFGE-A--N--A----PG-------------RVTADLIVVVGGDGTVL 55 (258)
T ss_dssp EEEEEECGGGHHH-HHHHHHHHTTTSE---EEEEEE-S--S--S----CS-------------CBCCSEEEEEECHHHHH
T ss_pred EEEEEEeCCCchH-HHHHHHHHHHHhc---CCceec-c--c--c----cc-------------cCCCCEEEEEeCcHHHH
Confidence 5899999999987 7778888887776 233321 1 1 0 00 12458999999999999
Q ss_pred HHHHHHhhccCCCCCc-EEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCce
Q 011293 118 WLLGVVCDLKLSHPPP-IATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKE 175 (489)
Q Consensus 118 ~vl~~l~~~~~~~~~p-lgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~ 175 (489)
++++.+.. .+| ||| ++||.+.|+ .+. + +++.++++.+.+++.
T Consensus 56 ~~a~~~~~-----~~PilGI-n~G~~Gfl~-~~~-~--------~~~~~al~~i~~g~~ 98 (258)
T 1yt5_A 56 KAAKKAAD-----GTPMVGF-KAGRLGFLT-SYT-L--------DEIDRFLEDLRNWNF 98 (258)
T ss_dssp HHHTTBCT-----TCEEEEE-ESSSCCSSC-CBC-G--------GGHHHHHHHHHTTCC
T ss_pred HHHHHhCC-----CCCEEEE-ECCCCCccC-cCC-H--------HHHHHHHHHHHcCCc
Confidence 99988752 445 777 599996655 465 4 257788888887765
No 6
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=99.14 E-value=4.3e-10 Score=113.28 Aligned_cols=125 Identities=16% Similarity=0.171 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHH-HH-HHHHHHhhhccchhhh---hhcCCcEEEE
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALR-RI-YLNLETLKANGDAYAT---QIQERLRIIV 109 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~-~l-~~~l~~l~~~~~~~a~---~~~~~~~IIv 109 (489)
+++++||+||.++ .+.+.+..+.+.|...++ +.+.........+ .+ ...+.+.......+++ ...+.+.||+
T Consensus 4 m~ki~iI~n~~~~--~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~ 81 (307)
T 1u0t_A 4 HRSVLLVVHTGRD--EATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLV 81 (307)
T ss_dssp -CEEEEEESSSGG--GGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEE
T ss_pred CCEEEEEEeCCCH--HHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEE
Confidence 5789999999986 445678888888887665 4443321111000 00 0000000000000000 0124578999
Q ss_pred EcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCcee
Q 011293 110 AGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEM 176 (489)
Q Consensus 110 ~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~ 176 (489)
+|||||++.+++.+... ..|.|| |++||.|.|+. +. + .++.++++.+.+++..
T Consensus 82 ~GGDGT~l~a~~~~~~~---~~pvlg-i~~G~~gfl~~-~~-~--------~~~~~~~~~i~~g~~~ 134 (307)
T 1u0t_A 82 LGGDGTFLRAAELARNA---SIPVLG-VNLGRIGFLAE-AE-A--------EAIDAVLEHVVAQDYR 134 (307)
T ss_dssp EECHHHHHHHHHHHHHH---TCCEEE-EECSSCCSSCS-EE-G--------GGHHHHHHHHHHTCCE
T ss_pred EeCCHHHHHHHHHhccC---CCCEEE-EeCCCCccCcc-cC-H--------HHHHHHHHHHHcCCcE
Confidence 99999999999998642 234466 58999998885 43 3 2577788888877653
No 7
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=99.02 E-value=1.4e-09 Score=107.59 Aligned_cols=94 Identities=11% Similarity=0.064 Sum_probs=66.9
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhccCCeEEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHHH
Q 011293 38 PVLVFINSKSGGQLGGDLLVTYRSLLNKNQVFDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTAG 117 (489)
Q Consensus 38 ~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~ 117 (489)
++.||+||+ ..+.+.++.+.+.|...++ ++. ..+.+.||++|||||+.
T Consensus 2 ki~ii~n~~---~~~~~~~~~l~~~l~~~g~-~v~----------------------------~~~~D~vv~lGGDGT~l 49 (272)
T 2i2c_A 2 KYMITSKGD---EKSDLLRLNMIAGFGEYDM-EYD----------------------------DVEPEIVISIGGDGTFL 49 (272)
T ss_dssp EEEEEECCS---HHHHHHHHHHHHHHTTSSC-EEC----------------------------SSSCSEEEEEESHHHHH
T ss_pred EEEEEECCC---HHHHHHHHHHHHHHHHCCC-EeC----------------------------CCCCCEEEEEcCcHHHH
Confidence 578999963 3566778888888876543 110 02357999999999999
Q ss_pred HHHHHHhhccCCCCCc-EEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCcee
Q 011293 118 WLLGVVCDLKLSHPPP-IATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAKEM 176 (489)
Q Consensus 118 ~vl~~l~~~~~~~~~p-lgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~~~ 176 (489)
.++..+... ...+| ||+ |+|| |+|+..+. + +.+.++++.+.++...
T Consensus 50 ~aa~~~~~~--~~~~PilGI-n~G~-lgfl~~~~-~--------~~~~~~l~~l~~g~~~ 96 (272)
T 2i2c_A 50 SAFHQYEER--LDEIAFIGI-HTGH-LGFYADWR-P--------AEADKLVKLLAKGEYQ 96 (272)
T ss_dssp HHHHHTGGG--TTTCEEEEE-ESSS-CCSSCCBC-G--------GGHHHHHHHHHTTCCE
T ss_pred HHHHHHhhc--CCCCCEEEE-eCCC-CCcCCcCC-H--------HHHHHHHHHHHcCCCE
Confidence 999988631 02566 666 9999 66888775 4 2577888888888754
No 8
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=97.91 E-value=3.4e-05 Score=79.93 Aligned_cols=150 Identities=19% Similarity=0.275 Sum_probs=82.3
Q ss_pred ccccccccceeecCCCCCc-ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccC--CeEEEEccCchhHHHHHHHHH
Q 011293 11 SLKEFYIPSYVLLPDSESE-TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKN--QVFDVGEEAPDKALRRIYLNL 87 (489)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~--~V~dl~~~~p~~~l~~l~~~l 87 (489)
.|+.-..|.|+-+|.+... ..-+.+++.++||+||.. ....+.+..+.+.|... ++ .+..+ +..+ +.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~w~~~~k~V~II~n~~~--~~~~~~~~~l~~~L~~~~~gi-~V~ve-~~~a-~~l~~~~ 89 (388)
T 3afo_A 15 NLRSSSSADFVSPPNSKLQSLIWQNPLQNVYITKKPWT--PSTREAMVEFITHLHESYPEV-NVIVQ-PDVA-EEISQDF 89 (388)
T ss_dssp GSCCCCCCEEEC----CCEEEECSSCCCEEEEEECTTC--HHHHHHHHHHHHHHHHHCTTC-EEECC-HHHH-HHHHTTC
T ss_pred hcCcccCcceEeCcchhheeeEccCCCcEEEEEEeCCC--HHHHHHHHHHHHHHHHhCCCe-EEEEe-Cchh-hhhhhhc
Confidence 4566568999999988633 222367889999999874 45566777777777654 33 22111 1111 1011000
Q ss_pred HHh-hh----c----cchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCC
Q 011293 88 ETL-KA----N----GDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGT 158 (489)
Q Consensus 88 ~~l-~~----~----~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~ 158 (489)
..- .. . .........+.+.||++|||||+..++..+... ..+|.||| ++||.+-|+ .+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvlGGDGTlL~aa~~~~~~--~vpPiLGI-N~G~lGFLt-~~~~------- 158 (388)
T 3afo_A 90 KSPLENDPNRPHILYTGPEQDIVNRTDLLVTLGGDGTILHGVSMFGNT--QVPPVLAF-ALGTLGFLS-PFDF------- 158 (388)
T ss_dssp CSCGGGCTTSCEEEEECCHHHHHHHCSEEEEEESHHHHHHHHHTTTTS--CCCCEEEE-ECSSCCSSC-CEEG-------
T ss_pred cccccccccccccccccchhhcccCCCEEEEEeCcHHHHHHHHHhccc--CCCeEEEE-ECCCcccCC-cCCh-------
Confidence 000 00 0 000000012357999999999999999877531 11234555 999985554 3443
Q ss_pred ChHHHHHHHHHHHcCceeeE
Q 011293 159 DRHAVEQFLRHVMNAKEMKI 178 (489)
Q Consensus 159 ~~~~l~~~l~~i~~a~~~~i 178 (489)
+.+.++++.+.++.....
T Consensus 159 --~~~~~al~~il~g~~~~~ 176 (388)
T 3afo_A 159 --KEHKKVFQEVISSRAKCL 176 (388)
T ss_dssp --GGHHHHHHHHHTTCCEEE
T ss_pred --HHHHHHHHHHhcCCceEE
Confidence 257788889988875433
No 9
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=94.72 E-value=0.045 Score=53.98 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=47.5
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHH
Q 011293 38 PVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTA 116 (489)
Q Consensus 38 ~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv 116 (489)
++.|+.|+..- .+.+.+.|....+ +.+.... .. . ....+.||++|||||+
T Consensus 31 ki~iv~~~~~~-------~~~l~~~L~~~g~~v~~~~~~-~~-------~--------------~~~~DlvIvlGGDGT~ 81 (278)
T 1z0s_A 31 RAAVVYKTDGH-------VKRIEEALKRLEVEVELFNQP-SE-------E--------------LENFDFIVSVGGDGTI 81 (278)
T ss_dssp EEEEEESSSTT-------HHHHHHHHHHTTCEEEEESSC-CG-------G--------------GGGSSEEEEEECHHHH
T ss_pred EEEEEeCCcHH-------HHHHHHHHHHCCCEEEEcccc-cc-------c--------------cCCCCEEEEECCCHHH
Confidence 48999997654 5566666766655 3333211 11 0 1245799999999999
Q ss_pred HHHHHHHhhccCCCCCcEEEeeCCCCCchh
Q 011293 117 GWLLGVVCDLKLSHPPPIATVPLGTGNNLP 146 (489)
Q Consensus 117 ~~vl~~l~~~~~~~~~plgiIP~GTGNDfA 146 (489)
-.++..+. .. +||--|.+||-+=|+
T Consensus 82 L~aa~~~~----~~-~PilGIN~G~lGFLt 106 (278)
T 1z0s_A 82 LRILQKLK----RC-PPIFGINTGRVGLLT 106 (278)
T ss_dssp HHHHTTCS----SC-CCEEEEECSSSCTTC
T ss_pred HHHHHHhC----CC-CcEEEECCCCCcccc
Confidence 88776543 23 777778888644444
No 10
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=92.74 E-value=0.73 Score=47.03 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=75.1
Q ss_pred ceeecCCCCCcccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHH--HH----Hh-
Q 011293 19 SYVLLPDSESETVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLN--LE----TL- 90 (489)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~--l~----~l- 90 (489)
.|+-.|.+....+.. +.+.++||--|.. ......+..+.+.|...++ +-+...-..+ +. +... +. +.
T Consensus 22 ~~~~~~~~~~l~w~~-~~k~I~iv~K~~~--~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~-~~-~~~~~~~~~~~~~~~ 96 (365)
T 3pfn_A 22 MHIQDPASQRLTWNK-SPKSVLVIKKMRD--ASLLQPFKELCTHLMEENMIVYVEKKVLED-PA-IASDESFGAVKKKFC 96 (365)
T ss_dssp EEEECTTTCBEEESS-CCCEEEEEECTTC--GGGHHHHHHHHHHHHHTSCEEEEEHHHHHS-HH-HHHCSTTHHHHHHCE
T ss_pred eeecCccccccccCC-CCCEEEEEecCCC--HHHHHHHHHHHHHHHHCCCEEEEehHHhhh-hc-ccccccccccccccc
Confidence 367777775555554 5677888877654 3455667777777776654 3332210000 00 1000 00 00
Q ss_pred --hhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHH
Q 011293 91 --KANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLR 168 (489)
Q Consensus 91 --~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~ 168 (489)
....+.+ ....+.||++|||||+-.++..+.. ..+||--|-+| .||.=... ..+.+.+.|+
T Consensus 97 ~~~~~~~~~---~~~~DlvI~lGGDGT~L~aa~~~~~----~~~PvlGiN~G-------~LGFLt~~---~~~~~~~~l~ 159 (365)
T 3pfn_A 97 TFREDYDDI---SNQIDFIICLGGDGTLLYASSLFQG----SVPPVMAFHLG-------SLGFLTPF---SFENFQSQVT 159 (365)
T ss_dssp EECTTTCCC---TTTCSEEEEESSTTHHHHHHHHCSS----SCCCEEEEESS-------SCTTTCCE---ESTTHHHHHH
T ss_pred ccccChhhc---ccCCCEEEEEcChHHHHHHHHHhcc----CCCCEEEEcCC-------CCccceee---cHHHHHHHHH
Confidence 0000111 1245789999999999888876642 45665444455 23432211 1235778888
Q ss_pred HHHcCceeeEeE
Q 011293 169 HVMNAKEMKIDN 180 (489)
Q Consensus 169 ~i~~a~~~~iD~ 180 (489)
.+.++...--.+
T Consensus 160 ~vl~g~~~v~~R 171 (365)
T 3pfn_A 160 QVIEGNAAVVLR 171 (365)
T ss_dssp HHHHSCCBEEEE
T ss_pred HHHcCCCeEEEE
Confidence 888887543333
No 11
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=81.72 E-value=1.8 Score=43.64 Aligned_cols=105 Identities=13% Similarity=0.123 Sum_probs=58.5
Q ss_pred ccc-ccce-eecCCCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCeEEEEc---cCchhHHHHHHH
Q 011293 14 EFY-IPSY-VLLPDSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQVFDVGE---EAPDKALRRIYL 85 (489)
Q Consensus 14 ~~~-~~~~-~~~~~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V~dl~~---~~p~~~l~~l~~ 85 (489)
.|+ .|+. ++-++.-.. .......++++|+..+.. ..+.+.+.+.|....+ .+.. ..|. .+.+.+
T Consensus 7 ~~~~~p~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~-----~~~~~~v~~~L~~~~~-~v~~~v~~~p~--~~~v~~ 78 (353)
T 3hl0_A 7 VYMAAPARIVFSAGSSADVAEEIRRLGLSRALVLSTPQQ-----KGDAEALASRLGRLAA-GVFSEAAMHTP--VEVTKT 78 (353)
T ss_dssp CCCCCCCCEEECTTGGGGHHHHHHHTTCCCEEEECCGGG-----HHHHHHHHHHHGGGEE-EEECCCCTTCB--HHHHHH
T ss_pred eeecCCceEEECcCHHHHHHHHHHHhCCCEEEEEecCch-----hhHHHHHHHHHhhCCc-EEecCcCCCCc--HHHHHH
Confidence 455 7854 444433322 122233467888887642 2357778888876433 2222 2222 121222
Q ss_pred HHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 86 NLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 86 ~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
.++.+ ++ .+.+.||++|| |++..+...+.. ...+|+..||.
T Consensus 79 ~~~~~--------~~-~~~D~IIavGG-Gs~iD~aK~iA~---~~~~p~i~IPT 119 (353)
T 3hl0_A 79 AVEAY--------RA-AGADCVVSLGG-GSTTGLGKAIAL---RTDAAQIVIPT 119 (353)
T ss_dssp HHHHH--------HH-TTCSEEEEEES-HHHHHHHHHHHH---HHCCEEEEEEC
T ss_pred HHHHH--------hc-cCCCEEEEeCC-cHHHHHHHHHHh---ccCCCEEEEeC
Confidence 22211 11 34578999999 999888877653 24688999996
No 12
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=81.63 E-value=1.7 Score=44.07 Aligned_cols=105 Identities=15% Similarity=0.072 Sum_probs=58.2
Q ss_pred ccc-cccee-ecCCCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCeEEEEc--cCc-hhHHHHHHH
Q 011293 14 EFY-IPSYV-LLPDSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQVFDVGE--EAP-DKALRRIYL 85 (489)
Q Consensus 14 ~~~-~~~~~-~~~~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V~dl~~--~~p-~~~l~~l~~ 85 (489)
.|+ .|+.| +-++.-.. .......++++|+..+.. ..+.+.+.+.|....+..... ..| .+.++++.+
T Consensus 9 ~~~~~p~~i~~G~g~~~~l~~~l~~~g~~r~liVtd~~~-----~~~~~~v~~~L~~~~~~~f~~v~~~p~~~~v~~~~~ 83 (358)
T 3jzd_A 9 IYEAHAARVVFGAGSSSQVAAEVERLGAKRALVLCTPNQ-----QAEAERIADLLGPLSAGVYAGAVMHVPIESARDATA 83 (358)
T ss_dssp EEEECCEEEEESTTGGGGHHHHHHHTTCSCEEEECCGGG-----HHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHH
T ss_pred eeecCCceEEECCCHHHHHHHHHHHhCCCeEEEEeCCcH-----HHHHHHHHHHhccCCEEEecCCcCCCCHHHHHHHHH
Confidence 354 78544 44433322 122233468888887642 235677788887654321221 222 222222222
Q ss_pred HHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 86 NLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 86 ~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
.+ ++ .+.+.||++|| |++..+...+.. ...+|+..||.
T Consensus 84 ~~-----------~~-~~~D~IIavGG-GsviD~aK~iA~---~~~~p~i~IPT 121 (358)
T 3jzd_A 84 RA-----------RE-AGADCAVAVGG-GSTTGLGKAIAL---ETGMPIVAIPT 121 (358)
T ss_dssp HH-----------HH-HTCSEEEEEES-HHHHHHHHHHHH---HHCCCEEEEEC
T ss_pred Hh-----------hc-cCCCEEEEeCC-cHHHHHHHHHHh---ccCCCEEEEeC
Confidence 21 11 24578999999 999888877653 24688889986
No 13
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=81.60 E-value=8.7 Score=38.76 Aligned_cols=119 Identities=23% Similarity=0.340 Sum_probs=63.5
Q ss_pred cccccccceeecCCCC----CcccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe----EEEEccCch-hHHHH
Q 011293 12 LKEFYIPSYVLLPDSE----SETVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV----FDVGEEAPD-KALRR 82 (489)
Q Consensus 12 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V----~dl~~~~p~-~~l~~ 82 (489)
.-.|..|..|...... ........ ++++|+..+.+-... .+++.+.+.|....+ |+-.+..|. +.+++
T Consensus 13 ~~~~~~p~~i~~G~g~~~~l~~~l~~~g-~~~liVtd~~~~~~~--g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~ 89 (371)
T 1o2d_A 13 VWEFYMPTDVFFGEKILEKRGNIIDLLG-KRALVVTGKSSSKKN--GSLDDLKKLLDETEISYEIFDEVEENPSFDNVMK 89 (371)
T ss_dssp CCCCCCCCEEEESTTHHHHHGGGGGGTC-SEEEEEEESSGGGTS--SHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHH
T ss_pred eEEecCCceEEECcCHHHHHHHHHHHcC-CEEEEEECchHHhhc--cHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHH
Confidence 3567788655544332 11222222 789999987553222 256666666654332 332222332 22222
Q ss_pred HHHHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCC---------------CCCcEEEeeC--CCCCch
Q 011293 83 IYLNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLS---------------HPPPIATVPL--GTGNNL 145 (489)
Q Consensus 83 l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~---------------~~~plgiIP~--GTGNDf 145 (489)
+.+.+ + + .+.+.||++|| |++..+...+...... ..+|+..||. |||--.
T Consensus 90 ~~~~~---~--------~-~~~d~IIavGG-Gsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgse~ 156 (371)
T 1o2d_A 90 AVERY---R--------N-DSFDFVVGLGG-GSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGSEV 156 (371)
T ss_dssp HHHHH---T--------T-SCCSEEEEEES-HHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCGGG
T ss_pred HHHHH---H--------h-cCCCEEEEeCC-hHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCchhhhh
Confidence 22221 1 1 24578888888 7888777666432111 5789999995 455444
Q ss_pred h
Q 011293 146 P 146 (489)
Q Consensus 146 A 146 (489)
.
T Consensus 157 t 157 (371)
T 1o2d_A 157 T 157 (371)
T ss_dssp C
T ss_pred c
Confidence 3
No 14
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=79.93 E-value=7.9 Score=39.59 Aligned_cols=121 Identities=16% Similarity=0.180 Sum_probs=61.5
Q ss_pred cccccce-eecCCCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCeEEEEccCchhHHHHHHHHHHH
Q 011293 14 EFYIPSY-VLLPDSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQVFDVGEEAPDKALRRIYLNLET 89 (489)
Q Consensus 14 ~~~~~~~-~~~~~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V~dl~~~~p~~~l~~l~~~l~~ 89 (489)
.|..|+. ++-++.-.. ... . .++++|+..+.+- ....+.+.+.+.|....++.+....+..-++.+.+.++.
T Consensus 26 ~~~~p~~i~~G~g~l~~l~~~l~-~-g~r~liVtd~~~~--~~~g~~~~v~~~L~g~~~~~f~~v~~~p~~~~v~~~~~~ 101 (408)
T 1oj7_A 26 NLHTPTRILFGKGAIAGLREQIP-H-DARVLITYGGGSV--KKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKL 101 (408)
T ss_dssp EEEEEEEEEESTTGGGGHHHHSC-T-TCEEEEEECSSHH--HHHSHHHHHHHHTTTSEEEEECCCCSSCBHHHHHHHHHH
T ss_pred eecCCCeEEECCCHHHHHHHHHh-c-CCEEEEEECCchh--hhccHHHHHHHHhCCCEEEEeCCcCCCcCHHHHHHHHHH
Confidence 3567864 454433222 222 2 3789988865431 111256777777762222222211111111212222221
Q ss_pred hhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccC------------------CCCCcEEEeeC--CCCCchhhh
Q 011293 90 LKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKL------------------SHPPPIATVPL--GTGNNLPFA 148 (489)
Q Consensus 90 l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~------------------~~~~plgiIP~--GTGNDfArs 148 (489)
+ ++ .+.+.||++|| |++..+...+..... ...+|+..||. |||-.....
T Consensus 102 ~--------~~-~~~D~IIavGG-GsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagtgSevt~~ 170 (408)
T 1oj7_A 102 V--------RE-QKVTFLLAVGG-GSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAG 170 (408)
T ss_dssp H--------HH-HTCCEEEEEES-HHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSSCGGGSSE
T ss_pred H--------HH-cCCCEEEEeCC-chHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCchhHHhCCC
Confidence 1 11 24578998988 788877766543211 14689999997 666554443
No 15
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=77.02 E-value=5.8 Score=40.30 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=64.0
Q ss_pred cccccceeecCCCC-Cc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe----EEEEccCch-hHHHHHH
Q 011293 14 EFYIPSYVLLPDSE-SE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV----FDVGEEAPD-KALRRIY 84 (489)
Q Consensus 14 ~~~~~~~~~~~~~~-~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V----~dl~~~~p~-~~l~~l~ 84 (489)
.|+.|+.|...... .. .......++++|+..+.- ....+.+.+.+.|....+ |+-....|. +.++++.
T Consensus 5 ~f~~p~~i~~G~g~~~~l~~~~~~~g~~~~liVtd~~~---~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~ 81 (383)
T 3ox4_A 5 TFYIPFVNEMGEGSLEKAIKDLNGSGFKNALIVSDAFM---NKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGL 81 (383)
T ss_dssp EEECCSEEEESTTHHHHHHHTTTTSCCCEEEEEEEHHH---HHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHH
T ss_pred eecCCCeEEECCCHHHHHHHHHHHcCCCEEEEEECCch---hhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHH
Confidence 57889765544332 11 233334578888887532 112257777888876543 322222332 2222222
Q ss_pred HHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhcc---------------CCCCCcEEEeeC--CCCCchh
Q 011293 85 LNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLK---------------LSHPPPIATVPL--GTGNNLP 146 (489)
Q Consensus 85 ~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~---------------~~~~~plgiIP~--GTGNDfA 146 (489)
+.+ ++ .+.+.||++|| |++..+...+.-.. ....+|+..||. |||-...
T Consensus 82 ~~~-----------~~-~~~D~IIavGG-Gsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgSe~t 147 (383)
T 3ox4_A 82 KIL-----------KD-NNSDFVISLGG-GSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGTASEMT 147 (383)
T ss_dssp HHH-----------HH-HTCSEEEEEES-HHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSCCTTTC
T ss_pred HHH-----------Hh-cCcCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCchhhcC
Confidence 221 11 24578999999 88888776653211 024789999997 5544433
No 16
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=76.84 E-value=3.5 Score=42.16 Aligned_cols=106 Identities=13% Similarity=0.051 Sum_probs=57.5
Q ss_pred cccccccee-ecCCCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe---EEEEccCc-hhHHHHHH
Q 011293 13 KEFYIPSYV-LLPDSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV---FDVGEEAP-DKALRRIY 84 (489)
Q Consensus 13 ~~~~~~~~~-~~~~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V---~dl~~~~p-~~~l~~l~ 84 (489)
..|+.|+.+ +-++.-.. ...... ++++||..+..- ..+.+.+.+.|.. .+ |+.....| .+.++++.
T Consensus 26 ~~f~~p~~i~~G~g~l~~l~~~l~~~g-~r~liVtd~~~~----~~~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~ 99 (387)
T 3uhj_A 26 RAFGGPNKYIQRAGEIDKLAAYLAPLG-KRALVLIDRVLF----DALSERIGKSCGD-SLDIRFERFGGECCTSEIERVR 99 (387)
T ss_dssp EEEECCSEEEECTTTTTTTHHHHGGGC-SEEEEEECTTTH----HHHHHHC-------CCEEEEEECCSSCSHHHHHHHH
T ss_pred hHhcCCCeEEEcCCHHHHHHHHHHHcC-CEEEEEECchHH----HHHHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHH
Confidence 567889555 44433322 122223 789999887653 2367777777776 44 33322233 22222222
Q ss_pred HHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCC
Q 011293 85 LNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLG 140 (489)
Q Consensus 85 ~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~G 140 (489)
+.+ ++ .+.+.||++|| |++..+...+.-+ ..+|+..||.=
T Consensus 100 ~~~-----------~~-~~~d~IIavGG-Gs~~D~AK~iA~~---~~~p~i~IPTT 139 (387)
T 3uhj_A 100 KVA-----------IE-HGSDILVGVGG-GKTADTAKIVAID---TGARIVIAPTI 139 (387)
T ss_dssp HHH-----------HH-HTCSEEEEESS-HHHHHHHHHHHHH---TTCEEEECCSS
T ss_pred HHH-----------hh-cCCCEEEEeCC-cHHHHHHHHHHHh---cCCCEEEecCc
Confidence 221 11 24578999999 9998888777632 47899999973
No 17
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=74.04 E-value=4.5 Score=40.95 Aligned_cols=93 Identities=18% Similarity=0.184 Sum_probs=53.8
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhccC-Ce--EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEc
Q 011293 35 PRCPVLVFINSKSGGQLGGDLLVTYRSLLNKN-QV--FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAG 111 (489)
Q Consensus 35 ~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~-~V--~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~G 111 (489)
..++++|+.++... ..+.+.+.+.|... .+ +.+....+...++.+.+.++.+.+. ...+.+.||++|
T Consensus 33 ~~~k~liVtd~~v~----~~~~~~v~~~L~~~~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~------~~~r~d~iIalG 102 (368)
T 2gru_A 33 EFDQYIMISDSGVP----DSIVHYAAEYFGKLAPVHILRFQGGEEYKTLSTVTNLQERAIAL------GANRRTAIVAVG 102 (368)
T ss_dssp SCSEEEEEEETTSC----HHHHHHHHHHHTTTSCEEEEEECCSGGGCSHHHHHHHHHHHHHT------TCCTTEEEEEEE
T ss_pred CCCEEEEEECCcHH----HHHHHHHHHHHHhccceeEEEeCCCCCCCCHHHHHHHHHHHHhc------CCCCCcEEEEEC
Confidence 35789999997664 22577777777654 33 2222222222222233322222211 112357888888
Q ss_pred CchHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 112 GDGTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 112 GDGTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
| |++..+...+... ....+|+..||.
T Consensus 103 G-Gsv~D~ak~~Aa~-~~rgip~i~IPT 128 (368)
T 2gru_A 103 G-GLTGNVAGVAAGM-MFRGIALIHVPT 128 (368)
T ss_dssp S-HHHHHHHHHHHHH-BTTCCEEEEEEC
T ss_pred C-hHHHHHHHHHHHH-hcCCCCEEEECC
Confidence 8 8999888877632 135789999998
No 18
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=69.76 E-value=16 Score=36.57 Aligned_cols=106 Identities=20% Similarity=0.118 Sum_probs=60.6
Q ss_pred ccccccc-eeecCCCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-E--EEEccCc-hhHHHHHH
Q 011293 13 KEFYIPS-YVLLPDSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-F--DVGEEAP-DKALRRIY 84 (489)
Q Consensus 13 ~~~~~~~-~~~~~~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~--dl~~~~p-~~~l~~l~ 84 (489)
..|..|+ +++-++.-.. ...... ++++|+..+.+-. .+.+.+.+.|....+ + .+....| .+.++++.
T Consensus 5 ~~~~~p~~i~~G~g~~~~l~~~l~~~g-~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~ 79 (370)
T 1jq5_A 5 RVFISPAKYVQGKNVITKIANYLEGIG-NKTVVIADEIVWK----IAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIA 79 (370)
T ss_dssp BCCCCCSEEEEETTGGGGHHHHHTTTC-SEEEEEECHHHHH----HTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHH
T ss_pred eEecCCCeEEECcCHHHHHHHHHHHcC-CeEEEEEChHHHH----HHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHH
Confidence 4577885 4454443222 222223 7899998765532 356777777765443 3 3322222 22233232
Q ss_pred HHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 85 LNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 85 ~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
+.+ ++ .+.+.||++|| |++..+...+..+ ..+|+..||.
T Consensus 80 ~~~-----------~~-~~~d~IIavGG-Gsv~D~aK~iA~~---~~~p~i~IPT 118 (370)
T 1jq5_A 80 NIA-----------RK-AEAAIVIGVGG-GKTLDTAKAVADE---LDAYIVIVPT 118 (370)
T ss_dssp HHH-----------HH-TTCSEEEEEES-HHHHHHHHHHHHH---HTCEEEEEES
T ss_pred HHH-----------Hh-cCCCEEEEeCC-hHHHHHHHHHHHh---cCCCEEEecc
Confidence 221 11 24578888888 8888888776532 3689999997
No 19
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=68.16 E-value=11 Score=38.69 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=52.6
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-E---EEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEE
Q 011293 35 PRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-F---DVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVA 110 (489)
Q Consensus 35 ~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~---dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~ 110 (489)
..++++|+.++... ..+.+.+.+.|....+ + .+....+...++.+.+.++.+++. ...+.+.||++
T Consensus 61 ~~~rvlIVtd~~v~----~~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~------~~~R~d~IIAv 130 (390)
T 3okf_A 61 AKQKVVIVTNHTVA----PLYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEH------NYSRDVVVIAL 130 (390)
T ss_dssp TTCEEEEEEETTTH----HHHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHT------TCCTTCEEEEE
T ss_pred CCCEEEEEECCcHH----HHHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhc------CCCcCcEEEEE
Confidence 45789999997663 3367777777765433 2 222211211122122222222111 12234688888
Q ss_pred cCchHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 111 GGDGTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 111 GGDGTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
|| |++..+...+... ....+|+..||.
T Consensus 131 GG-Gsv~D~ak~~Aa~-~~rgip~I~IPT 157 (390)
T 3okf_A 131 GG-GVIGDLVGFAAAC-YQRGVDFIQIPT 157 (390)
T ss_dssp ES-HHHHHHHHHHHHH-BTTCCEEEEEEC
T ss_pred CC-cHHhhHHHHHHHH-hcCCCCEEEeCC
Confidence 88 8888888776421 235789999997
No 20
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=65.42 E-value=16 Score=36.46 Aligned_cols=110 Identities=17% Similarity=0.104 Sum_probs=60.3
Q ss_pred cccccc-eeecCCCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEE-E-ccCchhHHHHHHHH
Q 011293 14 EFYIPS-YVLLPDSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDV-G-EEAPDKALRRIYLN 86 (489)
Q Consensus 14 ~~~~~~-~~~~~~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl-~-~~~p~~~l~~l~~~ 86 (489)
.|+.|. +++-++.-.. .......++++|+..+..-. .+.+.+.+.|....+ +.+ . ...|. ++.+.+.
T Consensus 8 ~~~~p~~i~~G~g~~~~l~~~l~~~g~~~~livtd~~~~~----~~~~~v~~~L~~~g~~~~~~~~~~~~~--~~~v~~~ 81 (354)
T 3ce9_A 8 RIAIPLILEVGNNKIYNIGQIIKKGNFKRVSLYFGEGIYE----LFGETIEKSIKSSNIEIEAVETVKNID--FDEIGTN 81 (354)
T ss_dssp CCCCCSEEEEESSCGGGHHHHHGGGTCSEEEEEEETTHHH----HHHHHHHHHHHTTTCEEEEEEEECCCB--HHHHHHH
T ss_pred EEeCCcEEEECCCHHHHHHHHHHhcCCCeEEEEECccHHH----HHHHHHHHHHHHcCCeEEEEecCCCCC--HHHHHHH
Confidence 466785 4554443322 12222336899999865532 356777777765433 221 1 22332 1212222
Q ss_pred HHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCC
Q 011293 87 LETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGN 143 (489)
Q Consensus 87 l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGN 143 (489)
+.++ + .+.+.||++|| |++..+...+.-+ ..+|+..||.=.|.
T Consensus 82 -~~~~--------~-~~~d~IIavGG-Gsv~D~aK~vA~~---~~~p~i~IPTT~~t 124 (354)
T 3ce9_A 82 -AFKI--------P-AEVDALIGIGG-GKAIDAVKYMAFL---RKLPFISVPTSTSN 124 (354)
T ss_dssp -HTTS--------C-TTCCEEEEEES-HHHHHHHHHHHHH---HTCCEEEEESCCSS
T ss_pred -HHhh--------h-cCCCEEEEECC-hHHHHHHHHHHhh---cCCCEEEecCcccC
Confidence 2111 1 24578888887 8888888776532 47899999975444
No 21
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=65.25 E-value=75 Score=28.69 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCch
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDG 114 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDG 114 (489)
.-.+.||.=..| -....+.....|...+| |++..-..+...+++.+-.++.. ...-...|.++||.|
T Consensus 12 ~P~V~IimGS~S----D~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~--------~~g~~ViIa~AG~aa 79 (173)
T 4grd_A 12 APLVGVLMGSSS----DWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKAR--------ERGLRAIIAGAGGAA 79 (173)
T ss_dssp SCSEEEEESSGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHT--------TTTCSEEEEEEESSC
T ss_pred CCeEEEEeCcHh----HHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHH--------hcCCeEEEEeccccc
Confidence 335777765444 34567777777887778 88765333222222222111100 001124577899999
Q ss_pred HHHHHHHHHhhccCCCCCcEEEeeCCCC
Q 011293 115 TAGWLLGVVCDLKLSHPPPIATVPLGTG 142 (489)
Q Consensus 115 Tv~~vl~~l~~~~~~~~~plgiIP~GTG 142 (489)
-|--|+.++. ..|.||+ |.-++
T Consensus 80 hLpgvvA~~t-----~~PVIgV-Pv~~~ 101 (173)
T 4grd_A 80 HLPGMLAAKT-----TVPVLGV-PVASK 101 (173)
T ss_dssp CHHHHHHHHC-----CSCEEEE-EECCT
T ss_pred cchhhheecC-----CCCEEEE-EcCCC
Confidence 9999999875 3455665 65443
No 22
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=64.59 E-value=13 Score=36.92 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=29.9
Q ss_pred CcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchh
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLP 146 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfA 146 (489)
=+.+|++|||||+.-+.. |.+ ..+++--||-==-||++
T Consensus 95 Id~LvvIGGdgS~~~a~~-L~~----~~i~vvgiPkTIDNDl~ 132 (320)
T 1pfk_A 95 IDALVVIGGDGSYMGAMR-LTE----MGFPCIGLPGTIDNDIK 132 (320)
T ss_dssp CCEEEEEECHHHHHHHHH-HHH----TTCCEEEEEBCTTCCCT
T ss_pred CCEEEEECCCchHHHHHH-HHh----hCCCEEEEeccccCCCC
Confidence 468999999999876543 333 36888889999999997
No 23
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=64.40 E-value=31 Score=35.09 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=60.8
Q ss_pred ccccccee-ecCCCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEcc---CchhHHHHHHH
Q 011293 14 EFYIPSYV-LLPDSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEE---APDKALRRIYL 85 (489)
Q Consensus 14 ~~~~~~~~-~~~~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~---~p~~~l~~l~~ 85 (489)
.|+.|+.| +-++.-.. .......++++|+..+.+-. ...+.+.+.+.|....+ +.+... .|.. +.+.+
T Consensus 17 ~~~~p~~i~~G~g~l~~l~~~l~~~g~~r~liVtd~~~~~--~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~--~~v~~ 92 (407)
T 1vlj_A 17 VFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIK--KNGVYDQVVDSLKKHGIEWVEVSGVKPNPVL--SKVHE 92 (407)
T ss_dssp EECCCCEEEESTTCGGGHHHHHHHTTCCEEEEEECSSHHH--HSSHHHHHHHHHHHTTCEEEEECCCCSSCBH--HHHHH
T ss_pred eEecCCeEEECcCHHHHHHHHHHHcCCCeEEEEECchHHh--hccHHHHHHHHHHHcCCeEEEecCccCCCCH--HHHHH
Confidence 35678654 44443222 11122336888888643211 11256677777765444 333321 2321 21222
Q ss_pred HHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhcc---------------CCCCCcEEEeeC--CCCCchh
Q 011293 86 NLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLK---------------LSHPPPIATVPL--GTGNNLP 146 (489)
Q Consensus 86 ~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~---------------~~~~~plgiIP~--GTGNDfA 146 (489)
.++.++ + .+.+.||++|| |++..+...+.... ....+|+..||. |||--..
T Consensus 93 ~~~~~~--------~-~~~D~IIavGG-GsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtgSevt 160 (407)
T 1vlj_A 93 AVEVAK--------K-EKVEAVLGVGG-GSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISATGTEMN 160 (407)
T ss_dssp HHHHHH--------H-TTCSEEEEEES-HHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSCGGGS
T ss_pred HHHHHH--------h-cCCCEEEEeCC-hhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCcchhhc
Confidence 222111 1 24578888888 78887776654321 015789999996 4544433
No 24
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=63.46 E-value=9.1 Score=38.70 Aligned_cols=103 Identities=15% Similarity=0.100 Sum_probs=56.2
Q ss_pred cc-ceeecCCCC-C---cccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCeEEEEccCchhHHHHHHHHHHHhh
Q 011293 17 IP-SYVLLPDSE-S---ETVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQVFDVGEEAPDKALRRIYLNLETLK 91 (489)
Q Consensus 17 ~~-~~~~~~~~~-~---~~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V~dl~~~~p~~~l~~l~~~l~~l~ 91 (489)
.| .+++-++.- . ........++++|+..+.. ..+.+.+.+.|....+|+-....|.. +.+.+.++..
T Consensus 13 ~P~~i~~G~g~~~~~l~~~l~~~g~~rvliVtd~~~-----~~~~~~v~~~L~~~~~f~~v~~~p~~--~~v~~~~~~~- 84 (364)
T 3iv7_A 13 LPQKVMFGYGKSSAFLKQEVERRGSAKVMVIAGERE-----MSIAHKVASEIEVAIWHDEVVMHVPI--EVAERARAVA- 84 (364)
T ss_dssp CCEEEEEETTCHHHHHHHHHHHHTCSSEEEECCGGG-----HHHHHHHTTTSCCSEEECCCCTTCBH--HHHHHHHHHH-
T ss_pred CCceEEEeCChHHHHHHHHHHHcCCCEEEEEECCCH-----HHHHHHHHHHcCCCEEEcceecCCCH--HHHHHHHHHH-
Confidence 78 455544432 1 1222223467888877642 23556677777643334322222321 1122222211
Q ss_pred hccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 92 ANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 92 ~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
++ .+.+.||++|| |++..+...+... ..+|+..||.
T Consensus 85 -------~~-~~~D~IIavGG-Gs~iD~aK~iA~~---~~~P~i~IPT 120 (364)
T 3iv7_A 85 -------TD-NEIDLLVCVGG-GSTIGLAKAIAMT---TALPIVAIPT 120 (364)
T ss_dssp -------HH-TTCCEEEEEES-HHHHHHHHHHHHH---HCCCEEEEEC
T ss_pred -------Hh-cCCCEEEEeCC-cHHHHHHHHHHhc---cCCCEEEEcC
Confidence 11 34578999999 8988888776532 4688999996
No 25
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=63.30 E-value=12 Score=37.23 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=51.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCc
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGD 113 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGD 113 (489)
.++++|+.++..... +.+.+.+.|....+ +.+.. ..+...++.+.+.++.+++. ...+.+.||++||
T Consensus 26 ~~~~livtd~~v~~~----~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~------~~~r~d~iIavGG- 94 (343)
T 3clh_A 26 KQKALIISDSIVAGL----HLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEM------QLNRHSLMIALGG- 94 (343)
T ss_dssp SSCEEEEEEHHHHTT----THHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHHT------TCCTTCEEEEEES-
T ss_pred CCEEEEEECCcHHHH----HHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHhc------CCCCCceEEEECC-
Confidence 478999998765432 46777777765555 22222 22211122222222221111 1233478888888
Q ss_pred hHHHHHHHHHhhccCCCCCcEEEeeCC
Q 011293 114 GTAGWLLGVVCDLKLSHPPPIATVPLG 140 (489)
Q Consensus 114 GTv~~vl~~l~~~~~~~~~plgiIP~G 140 (489)
|++..+...+... ....+|+..||.=
T Consensus 95 Gsv~D~ak~~A~~-~~rgip~i~IPTT 120 (343)
T 3clh_A 95 GVISDMVGFASSI-YFRGIDFINIPTT 120 (343)
T ss_dssp HHHHHHHHHHHHH-BTTCCEEEEEECS
T ss_pred hHHHHHHHHHHHH-hccCCCEEEeCCc
Confidence 8888888776532 2357899999953
No 26
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=61.62 E-value=26 Score=35.31 Aligned_cols=120 Identities=14% Similarity=0.172 Sum_probs=61.0
Q ss_pred cccccceeec-CCCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCch-hHHHHHH
Q 011293 14 EFYIPSYVLL-PDSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPD-KALRRIY 84 (489)
Q Consensus 14 ~~~~~~~~~~-~~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~-~~l~~l~ 84 (489)
.|++|+.|.. ++.-.. .......++++|+..+..-... ..+++.+.+.|....+ +.+.. ..|. +.++++.
T Consensus 7 ~~~~p~~i~~G~g~~~~l~~~l~~~g~~~~livtd~~~~~~~-~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~ 85 (387)
T 3bfj_A 7 DYLVPNVNFFGPNAISVVGERCQLLGGKKALLVTDKGLRAIK-DGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGL 85 (387)
T ss_dssp EEECCSEEEESTTGGGGHHHHHHHTTCSEEEEECCTTTC--C-CSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHH
T ss_pred eeeCCCeEEECCCHHHHHHHHHHHcCCCEEEEEECcchhhcc-chHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHH
Confidence 4778865544 332222 1122233789999887654320 0145566666654443 32222 2332 2222222
Q ss_pred HHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhc---------cC------CCCCcEEEeeC--CCCCchhh
Q 011293 85 LNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDL---------KL------SHPPPIATVPL--GTGNNLPF 147 (489)
Q Consensus 85 ~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~---------~~------~~~~plgiIP~--GTGNDfAr 147 (489)
+.+ + + .+.+.||++|| |++..+...+.-. .. ...+|+..||. |||--...
T Consensus 86 ~~~---~--------~-~~~d~IIavGG-Gsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgSevt~ 152 (387)
T 3bfj_A 86 AVF---R--------R-EQCDIIVTVGG-GSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGTASEVTR 152 (387)
T ss_dssp HHH---H--------H-TTCCEEEEEES-HHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTCCGGGCS
T ss_pred HHH---H--------h-cCCCEEEEeCC-cchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCccccccC
Confidence 222 1 1 24578888888 7888777665431 00 14789999996 55544433
No 27
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=58.57 E-value=5 Score=40.97 Aligned_cols=41 Identities=24% Similarity=0.248 Sum_probs=31.4
Q ss_pred CcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeC--CCCCchh
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPL--GTGNNLP 146 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~--GTGNDfA 146 (489)
.+.||++|| |++..+...+... ....+|+..||. ||+.|-+
T Consensus 106 ~d~iIalGG-Gsv~D~ak~~Aa~-~~rgip~i~IPTTlla~~das 148 (393)
T 1sg6_A 106 DTVVIALGG-GVIGDLTGFVAST-YMRGVRYVQVPTTLLAMVDSS 148 (393)
T ss_dssp TCEEEEEES-HHHHHHHHHHHHH-GGGCCEEEEEECSHHHHHTTT
T ss_pred CCEEEEECC-cHHHHHHHHHHHH-hcCCCCEEEECCchhhhhhcC
Confidence 378888887 8888888776532 125789999999 8999974
No 28
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=58.17 E-value=14 Score=36.68 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=29.6
Q ss_pred CcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchh
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLP 146 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfA 146 (489)
=+.+|++|||||+.-+.. |.+ ..+++--||-==-||++
T Consensus 94 Id~LvvIGGdgS~~~a~~-L~~----~~i~vvgiPkTIDNDl~ 131 (319)
T 1zxx_A 94 IDAVVVIGGDGSYHGALQ-LTR----HGFNSIGLPGTIDNDIP 131 (319)
T ss_dssp CCEEEEEECHHHHHHHHH-HHH----TTCCEEEEEEETTCCCT
T ss_pred CCEEEEECCchHHHHHHH-HHH----hCCCEEEEeecccCCCC
Confidence 368999999999876543 333 26888889998899987
No 29
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=54.57 E-value=15 Score=37.17 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=50.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEE---EccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcC
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDV---GEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGG 112 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl---~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GG 112 (489)
++++|+.++.... +...+.+.|....+ +.. ....+...++.+.+.++.+.+ ....+.+.||++||
T Consensus 44 ~rvlIVtd~~v~~-----~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~------~~~~r~d~IIavGG 112 (368)
T 3qbe_A 44 HKVAVVHQPGLAE-----TAEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGR------IGIGRKDALVSLGG 112 (368)
T ss_dssp SEEEEEECGGGHH-----HHHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHH------HTCCTTCEEEEEES
T ss_pred CEEEEEECccHHH-----HHHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHH------cCCCCCcEEEEECC
Confidence 7899999876532 35677777766543 222 122222112212222221111 11224578888888
Q ss_pred chHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 113 DGTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 113 DGTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
|++..+...+... ....+|+..||.
T Consensus 113 -Gsv~D~ak~~Aa~-~~rgip~i~IPT 137 (368)
T 3qbe_A 113 -GAATDVAGFAAAT-WLRGVSIVHLPT 137 (368)
T ss_dssp -HHHHHHHHHHHHH-GGGCCEEEEEEC
T ss_pred -hHHHHHHHHHHHH-hccCCcEEEECC
Confidence 8888888776532 125789999996
No 30
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=53.34 E-value=28 Score=36.09 Aligned_cols=107 Identities=13% Similarity=0.007 Sum_probs=60.0
Q ss_pred cccccccee-ecCCCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-E--EEEccCchhHHHHHHH
Q 011293 13 KEFYIPSYV-LLPDSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-F--DVGEEAPDKALRRIYL 85 (489)
Q Consensus 13 ~~~~~~~~~-~~~~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~--dl~~~~p~~~l~~l~~ 85 (489)
..|..|+.| +-++.-.. .......++++|+..+.+-. .+.+.+.+.|....+ + .+....|.. +.+.+
T Consensus 64 ~~f~~p~~i~~G~g~l~~l~~~l~~~g~~rvlIVtd~~~~~----~~~~~v~~~L~~~gi~~~~~~~~ge~~~--~~v~~ 137 (450)
T 1ta9_A 64 RIFTSPQKYVQGRHAFTRSYMYVKKWATKSAVVLADQNVWN----ICANKIVDSLSQNGMTVTKLVFGGEASL--VELDK 137 (450)
T ss_dssp EEEECCSEEEEETTGGGGHHHHHTTTCSSEEEEEEEHHHHH----HTHHHHHHHHHHTTCEEEEEEECSCCCH--HHHHH
T ss_pred eEEeCCceEEECcCHHHHHHHHHHhcCCCEEEEEECccHHH----HHHHHHHHHHHHCCCeEEEEeeCCCCCH--HHHHH
Confidence 567788644 44433222 22222334899998765532 256667777765443 2 333333322 11222
Q ss_pred HHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 86 NLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 86 ~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
.++ ++++ +.+.||++|| |++..+...+..+ ..+|+..||.
T Consensus 138 ~~~--------~~~~--~~D~IIAvGG-GSviD~AK~iA~~---~giP~I~IPT 177 (450)
T 1ta9_A 138 LRK--------QCPD--DTQVIIGVGG-GKTMDSAKYIAHS---MNLPSIICPT 177 (450)
T ss_dssp HHT--------TSCT--TCCEEEEEES-HHHHHHHHHHHHH---TTCCEEEEES
T ss_pred HHH--------HHhh--CCCEEEEeCC-cHHHHHHHHHHHh---cCCCEEEEeC
Confidence 221 1222 4578888888 8888888777632 4789999997
No 31
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=53.05 E-value=22 Score=35.54 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCch
Q 011293 36 RCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDG 114 (489)
Q Consensus 36 ~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDG 114 (489)
.++++|+.++... . +.+.+.+.|. ..+ +.+....+...++.+.+.++.+++ ....+.+.||++|| |
T Consensus 28 ~~kvliVtd~~v~----~-~~~~v~~~L~-~~~~~~~~~ge~~~~~~~v~~~~~~~~~------~~~~r~d~IIavGG-G 94 (348)
T 1ujn_A 28 AGPAALLFDRRVE----G-FAQEVAKALG-VRHLLGLPGGEAAKSLEVYGKVLSWLAE------KGLPRNATLLVVGG-G 94 (348)
T ss_dssp SSCEEEEEEGGGH----H-HHHHHHHHHT-CCCEEEECCSGGGSSHHHHHHHHHHHHH------HTCCTTCEEEEEES-H
T ss_pred CCEEEEEECCcHH----H-HHHHHHHHhc-cCeEEEECCCCCCCCHHHHHHHHHHHHH------cCCCCCCEEEEECC-c
Confidence 4789999986542 3 6777777775 333 222221222212222222221111 01123478888888 8
Q ss_pred HHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 115 TAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 115 Tv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
++..+...+... ....+|+..||.
T Consensus 95 sv~D~ak~~A~~-~~rgip~i~IPT 118 (348)
T 1ujn_A 95 TLTDLGGFVAAT-YLRGVAYLAFPT 118 (348)
T ss_dssp HHHHHHHHHHHH-BTTCCEEEEEEC
T ss_pred HHHHHHHHHHHH-hccCCCEEEecC
Confidence 888888777532 235789999996
No 32
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=51.32 E-value=37 Score=33.77 Aligned_cols=90 Identities=19% Similarity=0.259 Sum_probs=46.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCC-e-EEEEc-cCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCc
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQ-V-FDVGE-EAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGD 113 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~-V-~dl~~-~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGD 113 (489)
++++|+.++.. ...+.+.+.+.| ... + +.+.. ..+...++.+.+.++.+++. ...+.+.||++||
T Consensus 32 ~~~liVtd~~~----~~~~~~~v~~~L-~~g~~~~~~~~~~e~~p~~~~v~~~~~~~~~~------~~~r~d~iIavGG- 99 (354)
T 1xah_A 32 DQSFLLIDEYV----NQYFANKFDDIL-SYENVHKVIIPAGEKTKTFEQYQETLEYILSH------HVTRNTAIIAVGG- 99 (354)
T ss_dssp SCEEEEEEHHH----HHHHHHHHC-------CEEEEEECSGGGGCSHHHHHHHHHHHHTT------CCCTTCEEEEEES-
T ss_pred CeEEEEECCcH----HHHHHHHHHHHH-hcCCeEEEEECCCCCCCCHHHHHHHHHHHHHc------CCCCCceEEEECC-
Confidence 78999988543 222566677777 443 4 22222 22211122222222222211 1123378888888
Q ss_pred hHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 114 GTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 114 GTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
|++..+...+... ....+|+..||.
T Consensus 100 Gsv~D~ak~vA~~-~~rgip~i~IPT 124 (354)
T 1xah_A 100 GATGDFAGFVAAT-LLRGVHFIQVPT 124 (354)
T ss_dssp HHHHHHHHHHHHH-BTTCCEEEEEEC
T ss_pred hHHHHHHHHHHHH-hccCCCEEEECC
Confidence 8888888776532 236789999997
No 33
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=50.87 E-value=22 Score=35.25 Aligned_cols=44 Identities=30% Similarity=0.486 Sum_probs=32.5
Q ss_pred CcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchh---hhccCC
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLP---FAFGWG 152 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfA---rsLG~~ 152 (489)
=+.++++|||||+.-+. .+.+ ..+|+--||-==-||++ .++|..
T Consensus 94 Id~L~~IGGdgS~~~a~-~l~~----~~i~vigiPkTIDNDl~~td~t~Gfd 140 (319)
T 4a3s_A 94 IEGLVVIGGDGSYMGAK-KLTE----HGFPCVGVPGTIDNDIPGTDFTIGFD 140 (319)
T ss_dssp CCEEEEEECTTHHHHHH-HHHH----TTCCEEEEEEETTCCCTTCSCCEEHH
T ss_pred CCEEEEeCCcHHHHHHH-HHhc----cCCcEEEeeccccCCCCCCCCCCCHH
Confidence 45799999999987644 3443 36788889998899987 355554
No 34
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=47.35 E-value=1e+02 Score=27.86 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=50.8
Q ss_pred cCCCCCCc-EEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEE
Q 011293 31 VPDVPRCP-VLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRII 108 (489)
Q Consensus 31 ~~~~~~~~-vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~II 108 (489)
.+-+++.| +.||.=..| -....++....|....+ |++..-..+...+++.+-.++.. ...-...|.
T Consensus 6 ~~~~~m~~~V~IimGS~S----D~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~--------~~g~~ViIa 73 (174)
T 3kuu_A 6 NSAYAAGVKIAIVMGSKS----DWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAE--------ANGLHVIIA 73 (174)
T ss_dssp CCSSCCCCCEEEEESSGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTT--------TTTCSEEEE
T ss_pred cccccCCCcEEEEECcHH----HHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHH--------hCCCcEEEE
Confidence 45556665 666654333 34567777778887777 88765332222222222111100 001135677
Q ss_pred EEcCchHHHHHHHHHhhccCCCCCcEEEee
Q 011293 109 VAGGDGTAGWLLGVVCDLKLSHPPPIATVP 138 (489)
Q Consensus 109 v~GGDGTv~~vl~~l~~~~~~~~~plgiIP 138 (489)
++|+.+-|--|+.++. ..|.||+=+
T Consensus 74 ~AG~aa~LpgvvA~~t-----~~PVIgVP~ 98 (174)
T 3kuu_A 74 GNGGAAHLPGMLAAKT-----LVPVLGVPV 98 (174)
T ss_dssp EEESSCCHHHHHHHTC-----SSCEEEEEE
T ss_pred ECChhhhhHHHHHhcc-----CCCEEEeeC
Confidence 9999999999998875 345566533
No 35
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=46.15 E-value=24 Score=37.19 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=30.2
Q ss_pred CcEEEEEcCchHHHHHH---HHHhhccCCCCCcEEEeeCCCCCchh
Q 011293 104 RLRIIVAGGDGTAGWLL---GVVCDLKLSHPPPIATVPLGTGNNLP 146 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl---~~l~~~~~~~~~plgiIP~GTGNDfA 146 (489)
=+.+|++|||||+.-+. ..+.+. ...+++--||-==-||++
T Consensus 190 Id~LvvIGGdgS~~~A~~L~e~~~~~--g~~i~vVGIPkTIDNDl~ 233 (487)
T 2hig_A 190 VNILFTVGGDGTQRGALVISQEAKRR--GVDISVFGVPKTIDNDLS 233 (487)
T ss_dssp CSEEEEEECHHHHHHHHHHHHHHHHH--TCCCEEEEEECCTTSSCC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHh--CCCceEEeccccccCCCC
Confidence 35899999999987433 333222 246889999999999996
No 36
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=44.98 E-value=54 Score=31.67 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=26.1
Q ss_pred chhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 95 DAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 95 ~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
++++.-....+.+|..|| +|+.|++. ...|.-+||+
T Consensus 217 ~~m~~~m~~aDlvI~~gG-~T~~E~~~--------~g~P~i~ip~ 252 (282)
T 3hbm_A 217 ENIAKLMNESNKLIISAS-SLVNEALL--------LKANFKAICY 252 (282)
T ss_dssp SCHHHHHHTEEEEEEESS-HHHHHHHH--------TTCCEEEECC
T ss_pred HHHHHHHHHCCEEEECCc-HHHHHHHH--------cCCCEEEEeC
Confidence 345444456778888999 99999875 2567778885
No 37
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=44.64 E-value=1.4e+02 Score=26.84 Aligned_cols=85 Identities=19% Similarity=0.182 Sum_probs=50.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccC----chhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEc
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEA----PDKALRRIYLNLETLKANGDAYATQIQERLRIIVAG 111 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~----p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~G 111 (489)
..+.||.=..| -....++....|....+ |++..-. |+...+ +.+..+ +..-...|.++|
T Consensus 8 ~~V~IimgS~S----D~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~-~~~~a~-----------~~g~~ViIa~AG 71 (174)
T 3lp6_A 8 PRVGVIMGSDS----DWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFS-YARGAA-----------ARGLEVIIAGAG 71 (174)
T ss_dssp CSEEEEESCGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHH-HHHHHH-----------HHTCCEEEEEEE
T ss_pred CeEEEEECcHH----hHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHH-HHHHHH-----------hCCCCEEEEecC
Confidence 34666664443 34567777777877777 8876532 333222 322221 111235677999
Q ss_pred CchHHHHHHHHHhhccCCCCCcEEEeeCCCCC
Q 011293 112 GDGTAGWLLGVVCDLKLSHPPPIATVPLGTGN 143 (489)
Q Consensus 112 GDGTv~~vl~~l~~~~~~~~~plgiIP~GTGN 143 (489)
+.+-|--|+.++. ..|.|| +|.-+++
T Consensus 72 ~aa~LpgvvA~~t-----~~PVIg-VP~~~~~ 97 (174)
T 3lp6_A 72 GAAHLPGMVAAAT-----PLPVIG-VPVPLGR 97 (174)
T ss_dssp SSCCHHHHHHHHC-----SSCEEE-EEECCSS
T ss_pred chhhhHHHHHhcc-----CCCEEE-eeCCCCC
Confidence 9999999998875 234455 4655553
No 38
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=43.26 E-value=1.4e+02 Score=26.68 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=48.0
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHHH
Q 011293 39 VLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTAG 117 (489)
Q Consensus 39 vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~ 117 (489)
+.||.=.. .-....++....|....+ |++..-..+...+++.+-+++.. +..-...|.++|+.+-|-
T Consensus 8 V~IimgS~----SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~--------~~g~~ViIa~AG~aa~Lp 75 (166)
T 3oow_A 8 VGVIMGSK----SDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAK--------ERGLKVIIAGAGGAAHLP 75 (166)
T ss_dssp EEEEESSG----GGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTT--------TTTCCEEEEEECSSCCHH
T ss_pred EEEEECcH----HhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHH--------hCCCcEEEEECCcchhhH
Confidence 55554333 334567777778887777 88765332222222222221111 001134677999999999
Q ss_pred HHHHHHhhccCCCCCcEEEeeCCCC
Q 011293 118 WLLGVVCDLKLSHPPPIATVPLGTG 142 (489)
Q Consensus 118 ~vl~~l~~~~~~~~~plgiIP~GTG 142 (489)
-++.++. ..|+--+|.-++
T Consensus 76 gvvA~~t------~~PVIgVP~~~~ 94 (166)
T 3oow_A 76 GMVAAKT------TLPVLGVPVKSS 94 (166)
T ss_dssp HHHHHTC------SSCEEEEECCCT
T ss_pred HHHHhcc------CCCEEEeecCcC
Confidence 9998865 344444566554
No 39
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=42.75 E-value=83 Score=28.34 Aligned_cols=78 Identities=14% Similarity=0.212 Sum_probs=44.2
Q ss_pred CCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhc---CCcEEEEEcCchHHHHHHHHH
Q 011293 48 GGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQ---ERLRIIVAGGDGTAGWLLGVV 123 (489)
Q Consensus 48 G~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~---~~~~IIv~GGDGTv~~vl~~l 123 (489)
|+..-....++....|...++ |++..-......+++.+- +++.. -...|.++||.+-|--|+.++
T Consensus 19 GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~-----------~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 87 (170)
T 1xmp_A 19 GSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEY-----------AETARERGLKVIIAGAGGAAHLPGMVAAK 87 (170)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHH-----------HHHTTTTTCCEEEEEEESSCCHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHH-----------HHHHHhCCCcEEEEECCchhhhHHHHHhc
Confidence 333345567777778887777 887653322222212111 11111 134677999999999999876
Q ss_pred hhccCCCCCcEEEeeCCCC
Q 011293 124 CDLKLSHPPPIATVPLGTG 142 (489)
Q Consensus 124 ~~~~~~~~~plgiIP~GTG 142 (489)
. ..|.|| +|.-++
T Consensus 88 t-----~~PVIg-VP~~~~ 100 (170)
T 1xmp_A 88 T-----NLPVIG-VPVQSK 100 (170)
T ss_dssp C-----CSCEEE-EEECCT
T ss_pred c-----CCCEEE-eeCCCC
Confidence 4 234455 555444
No 40
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=41.58 E-value=1e+02 Score=27.62 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=47.8
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHH
Q 011293 38 PVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTA 116 (489)
Q Consensus 38 ~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv 116 (489)
.+.||.=..| -....++....|....+ |++..-..+...+++.+-.++.. +..-...|.++||.+-|
T Consensus 5 ~V~Iimgs~S----D~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~--------~~g~~ViIa~AG~aa~L 72 (163)
T 3ors_A 5 KVAVIMGSSS----DWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEAR--------ERGINIIIAGAGGAAHL 72 (163)
T ss_dssp CEEEEESCGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTT--------TTTCCEEEEEEESSCCH
T ss_pred eEEEEECcHH----HHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHH--------hCCCcEEEEECCchhhh
Confidence 3555553333 34567777777877777 88765332222222221111100 00113467799999999
Q ss_pred HHHHHHHhhccCCCCCcEEEeeCCCC
Q 011293 117 GWLLGVVCDLKLSHPPPIATVPLGTG 142 (489)
Q Consensus 117 ~~vl~~l~~~~~~~~~plgiIP~GTG 142 (489)
--++.++. ..|.|| +|.-++
T Consensus 73 pgvvA~~t-----~~PVIg-VP~~~~ 92 (163)
T 3ors_A 73 PGMVASLT-----TLPVIG-VPIETK 92 (163)
T ss_dssp HHHHHHHC-----SSCEEE-EEECCT
T ss_pred HHHHHhcc-----CCCEEE-eeCCCC
Confidence 99998875 234455 455554
No 41
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=41.51 E-value=60 Score=28.89 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhccCCC
Q 011293 52 GGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLKLSH 130 (489)
Q Consensus 52 g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~~~~ 130 (489)
-....++....|...++ |++..-..+...+++.+ ++++......|.++||.|-|--|+.++. .
T Consensus 11 D~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~-----------~~~~a~~~ViIa~AG~aa~Lpgvva~~t-----~ 74 (157)
T 2ywx_A 11 DLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEE-----------IVKNSKADVFIAIAGLAAHLPGVVASLT-----T 74 (157)
T ss_dssp GHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHH-----------HHHHCCCSEEEEEEESSCCHHHHHHTTC-----S
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHH-----------HHHhcCCCEEEEEcCchhhhHHHHHhcc-----C
Confidence 34566777777877777 88765333222221211 1222223557889999999999998764 2
Q ss_pred CCcEEEeeCC
Q 011293 131 PPPIATVPLG 140 (489)
Q Consensus 131 ~~plgiIP~G 140 (489)
.|.|| +|.|
T Consensus 75 ~PVIg-VP~~ 83 (157)
T 2ywx_A 75 KPVIA-VPVD 83 (157)
T ss_dssp SCEEE-EEEC
T ss_pred CCEEE-ecCC
Confidence 34455 4553
No 42
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=39.78 E-value=16 Score=32.98 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=33.8
Q ss_pred EEEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHc
Q 011293 108 IVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMN 172 (489)
Q Consensus 108 Iv~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~ 172 (489)
..+|||-|-+ ++.-+...-+..+|-+-+|=+|| ||+++..+-.. +......+.++++.+..
T Consensus 56 ~Gi~G~tt~~-~l~r~~~~v~~~~Pd~vvi~~G~-ND~~~~~~~~~--~~~~~~~l~~ii~~~~~ 116 (209)
T 4hf7_A 56 RGISGQTSYQ-FLLRFREDVINLSPALVVINAGT-NDVAENTGAYN--EDYTFGNIASMAELAKA 116 (209)
T ss_dssp EECTTCCHHH-HHHHHHHHTGGGCCSEEEECCCH-HHHTTSSSSCC--HHHHHHHHHHHHHHHHH
T ss_pred eccCcccHHH-HHHHHHHHHHhcCCCEEEEEeCC-CcCcccccccc--HHHHHHHHHHhhHHHhc
Confidence 3678997754 34333321123467899999999 99987543321 00012345556655543
No 43
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=39.38 E-value=81 Score=31.79 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=24.7
Q ss_pred CcEEEEEcCchHHHHHHHHHhhcc---------------CCCCCcEEEeeC
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDLK---------------LSHPPPIATVPL 139 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~~---------------~~~~~plgiIP~ 139 (489)
.+.||++|| |++..+...+.-.. ....+|+..||.
T Consensus 110 ~D~IIavGG-GS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 159 (375)
T 3rf7_A 110 PVSVVGLGG-GSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPT 159 (375)
T ss_dssp CSEEEEEES-HHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEES
T ss_pred CCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcC
Confidence 678999999 88888776654211 013688999995
No 44
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=38.75 E-value=59 Score=32.59 Aligned_cols=117 Identities=10% Similarity=0.141 Sum_probs=60.7
Q ss_pred cccccceeecC-CCCCc---ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc---cCch-hHHHHHH
Q 011293 14 EFYIPSYVLLP-DSESE---TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE---EAPD-KALRRIY 84 (489)
Q Consensus 14 ~~~~~~~~~~~-~~~~~---~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~---~~p~-~~l~~l~ 84 (489)
.|+.|+.|... +.-.. .......++++|+..+..- ...+++.+.+.|....+ +.+.. ..|. +.++++.
T Consensus 5 ~f~~p~~i~~G~g~~~~l~~~l~~~g~~~~livtd~~~~---~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~ 81 (386)
T 1rrm_A 5 RMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLV---QCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGL 81 (386)
T ss_dssp EEECCSEEEESTTGGGGHHHHHHHHTCCEEEEECBHHHH---HTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHH
T ss_pred cccCCceEEECcCHHHHHHHHHHHcCCCEEEEEECcchh---hchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHH
Confidence 47788655443 32222 1111124688888765431 11256777777765443 32222 2232 2222222
Q ss_pred HHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhcc---C--------------CCCCcEEEeeC--CCCCch
Q 011293 85 LNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDLK---L--------------SHPPPIATVPL--GTGNNL 145 (489)
Q Consensus 85 ~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~~---~--------------~~~~plgiIP~--GTGNDf 145 (489)
+.+ ++ .+.+.||++|| |++..+...+.... . ...+|+..||. |||--.
T Consensus 82 ~~~-----------~~-~~~d~IIavGG-Gsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gtgSev 148 (386)
T 1rrm_A 82 GVF-----------QN-SGADYLIAIGG-GSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAAEV 148 (386)
T ss_dssp HHH-----------HH-HTCSEEEEEES-HHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSCCTTT
T ss_pred HHH-----------Hh-cCcCEEEEeCC-hHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCchhhh
Confidence 222 11 24578998988 78887776553211 0 24789999997 555443
Q ss_pred h
Q 011293 146 P 146 (489)
Q Consensus 146 A 146 (489)
.
T Consensus 149 t 149 (386)
T 1rrm_A 149 T 149 (386)
T ss_dssp C
T ss_pred C
Confidence 3
No 45
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=37.27 E-value=1.1e+02 Score=27.87 Aligned_cols=81 Identities=14% Similarity=0.232 Sum_probs=45.4
Q ss_pred CCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcCchHHHHHHHHHhhc
Q 011293 48 GGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGGDGTAGWLLGVVCDL 126 (489)
Q Consensus 48 G~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GGDGTv~~vl~~l~~~ 126 (489)
|+..-....++....|...++ |++..-......+++.+-.++.. ...-...|.++||.+-|--|+.++.
T Consensus 21 GS~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~--------~~g~~ViIa~AG~aa~LpgvvA~~t-- 90 (183)
T 1o4v_A 21 GSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAE--------ERGIEVIIAGAGGAAHLPGMVASIT-- 90 (183)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTT--------TTTCCEEEEEEESSCCHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHH--------hCCCcEEEEecCcccccHHHHHhcc--
Confidence 443345667777888887777 88765332222221211111000 0011346779999999999998875
Q ss_pred cCCCCCcEEEeeCCCC
Q 011293 127 KLSHPPPIATVPLGTG 142 (489)
Q Consensus 127 ~~~~~~plgiIP~GTG 142 (489)
..|+--+|.-++
T Consensus 91 ----~~PVIgVP~~~~ 102 (183)
T 1o4v_A 91 ----HLPVIGVPVKTS 102 (183)
T ss_dssp ----SSCEEEEEECCT
T ss_pred ----CCCEEEeeCCCC
Confidence 344444565554
No 46
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=34.41 E-value=61 Score=33.38 Aligned_cols=42 Identities=31% Similarity=0.370 Sum_probs=29.0
Q ss_pred CcEEEEEcCchHHHHHHHHHhhc--cCCCCCcEEEeeCCCCCchh
Q 011293 104 RLRIIVAGGDGTAGWLLGVVCDL--KLSHPPPIATVPLGTGNNLP 146 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~l~~~--~~~~~~plgiIP~GTGNDfA 146 (489)
=+.+|++|||||+.-+.. |.+. +....+++--||-==-||++
T Consensus 105 Id~Lv~IGGdgS~~~A~~-L~~~~~~~g~~i~vIGiPkTIDNDl~ 148 (419)
T 3hno_A 105 IGYFFYNGGGDSADTCLK-VSQLSGTLGYPIQAIHVPKTVDNDLP 148 (419)
T ss_dssp EEEEEEEESHHHHHHHHH-HHHHHHHTTCCCEEEEEECCTTCCCS
T ss_pred CCEEEEeCCchHHHHHHH-HHHHHHHhCCCccEEEecccccCCCc
Confidence 357999999999864432 2210 11246888889988889995
No 47
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=33.08 E-value=1.5e+02 Score=26.92 Aligned_cols=85 Identities=16% Similarity=0.145 Sum_probs=49.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhc---CCcEEEEEcC
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQ---ERLRIIVAGG 112 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~---~~~~IIv~GG 112 (489)
..+.||.=..| -....+.....|...++ |++..-..+...+++.+- +++.. -...|.++||
T Consensus 22 ~~V~IimGS~S----D~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~-----------~~~a~~~g~~ViIa~AG~ 86 (182)
T 1u11_A 22 PVVGIIMGSQS----DWETMRHADALLTELEIPHETLIVSAHRTPDRLADY-----------ARTAAERGLNVIIAGAGG 86 (182)
T ss_dssp CSEEEEESSGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHH-----------HHHTTTTTCCEEEEEEES
T ss_pred CEEEEEECcHH----HHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHH-----------HHHHHhCCCcEEEEecCc
Confidence 35777765444 34567777777877777 887653322222222111 11111 1346779999
Q ss_pred chHHHHHHHHHhhccCCCCCcEEEeeCCCC
Q 011293 113 DGTAGWLLGVVCDLKLSHPPPIATVPLGTG 142 (489)
Q Consensus 113 DGTv~~vl~~l~~~~~~~~~plgiIP~GTG 142 (489)
.+-|--|+.++. ..|.|| +|.-++
T Consensus 87 aa~LpgvvA~~t-----~~PVIg-VP~~~~ 110 (182)
T 1u11_A 87 AAHLPGMCAAWT-----RLPVLG-VPVESR 110 (182)
T ss_dssp SCCHHHHHHHHC-----SSCEEE-EEECCT
T ss_pred hhhhHHHHHhcc-----CCCEEE-eeCCCC
Confidence 999999998875 244455 455444
No 48
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=32.93 E-value=41 Score=36.03 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=32.6
Q ss_pred CcEEEEEcCchHHHHHH---HHHhhccCCCCCcEEEeeCCCCCchh-----hhccCC
Q 011293 104 RLRIIVAGGDGTAGWLL---GVVCDLKLSHPPPIATVPLGTGNNLP-----FAFGWG 152 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl---~~l~~~~~~~~~plgiIP~GTGNDfA-----rsLG~~ 152 (489)
=+.+|++|||||+.-+. ..+.+ ....+++--||-==-||++ .++|..
T Consensus 167 Id~LvvIGGdgS~~~A~~L~e~~~~--~~~~i~vIGiPkTIDNDl~~t~id~tiGFd 221 (555)
T 2f48_A 167 LNAIIIIGGDDSNTNAAILAEYFKK--NGENIQVIGVPKTIDADLRNDHIEISFGFD 221 (555)
T ss_dssp CSEEEEEESHHHHHHHHHHHHHHHH--TTCCCEEEEEEEETTCCCCCSSCCCCEEHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHHH--hCCCCcEEEeccccCCCCCCCcCCCCCChh
Confidence 35899999999976433 22222 2346899999988899995 355555
No 49
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=29.71 E-value=59 Score=36.17 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=30.0
Q ss_pred CcEEEEEcCchHHHHHHHH---HhhccCCCCCcEEEeeCCCCCchh
Q 011293 104 RLRIIVAGGDGTAGWLLGV---VCDLKLSHPPPIATVPLGTGNNLP 146 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~~---l~~~~~~~~~plgiIP~GTGNDfA 146 (489)
=+.+|++|||||+.-+... ..... ...+|+--||-==-||++
T Consensus 490 Id~LvvIGGdgS~~~a~~L~~~~~~~~-~~~i~vvgiPkTIDNDl~ 534 (762)
T 3o8l_A 490 IQGLVIIGGFEAYTGGLELMEGRKQFD-ELCIPFVVIPATVSNNVP 534 (762)
T ss_dssp CCCEEEEESHHHHHHHHHHHHHHHHCS-TTCSCEEEEEBCTTCCCT
T ss_pred CCEEEEeCCchHHHHHHHHHHHHHhcc-ccCCCEEeeccccCCCCC
Confidence 3579999999998755432 22111 136889999999999997
No 50
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=29.67 E-value=2e+02 Score=26.01 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=47.8
Q ss_pred CCCCc-EEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEc
Q 011293 34 VPRCP-VLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQERLRIIVAG 111 (489)
Q Consensus 34 ~~~~~-vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~G 111 (489)
..++| +-||.=+.| -....+...+.|...+| |++..-......+++.+-++.. ....-...|.++|
T Consensus 19 ~~mkp~V~IimGS~S----D~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a--------~~~g~~ViIa~AG 86 (181)
T 4b4k_A 19 SHMKSLVGVIMGSTS----DWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETA--------RERGLKVIIAGAG 86 (181)
T ss_dssp ---CCSEEEEESSGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHT--------TTTTCCEEEEEEC
T ss_pred CCCCccEEEEECCHh----HHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHH--------HhcCceEEEEecc
Confidence 34455 556665444 34567778888888888 8876532222222222211110 0001124577899
Q ss_pred CchHHHHHHHHHhhccCCCCCcEEEeeCC
Q 011293 112 GDGTAGWLLGVVCDLKLSHPPPIATVPLG 140 (489)
Q Consensus 112 GDGTv~~vl~~l~~~~~~~~~plgiIP~G 140 (489)
|.+-|--++..+. ..|+--+|.-
T Consensus 87 ~aahLpGvvAa~T------~~PVIGVPv~ 109 (181)
T 4b4k_A 87 GAAHLPGMVAAKT------NLPVIGVPVQ 109 (181)
T ss_dssp SSCCHHHHHHTTC------CSCEEEEECC
T ss_pred ccccchhhHHhcC------CCCEEEEecC
Confidence 9999998887653 3444445553
No 51
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=29.35 E-value=32 Score=31.03 Aligned_cols=66 Identities=12% Similarity=-0.025 Sum_probs=39.9
Q ss_pred cEEEEEcCchHHH---HHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCC---CCCChHHHHHHHHHHHcC
Q 011293 105 LRIIVAGGDGTAG---WLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKN---PGTDRHAVEQFLRHVMNA 173 (489)
Q Consensus 105 ~~IIv~GGDGTv~---~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~---~~~~~~~l~~~l~~i~~a 173 (489)
..-..++|+.|.. +++..+.. +..++-+-+|=+|| ||+.+........ ......++.++++.+.+.
T Consensus 55 v~N~g~~G~t~~~~~~~~~~~~~~--~~~~pd~Vii~~G~-ND~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~ 126 (232)
T 3dc7_A 55 SDNLGISGSTIGSRYDAMAVRYQA--IPEDADFIAVFGGV-NDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTN 126 (232)
T ss_dssp CEEEECTTCCSSTTSSCHHHHGGG--SCTTCSEEEEECCH-HHHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHH
T ss_pred eEEeeeCCcccccChHHHHHHHHh--cCCCCCEEEEEEec-cccccCcCCccccccchHHHHHHHHHHHHHHHHh
Confidence 3455778887775 45555544 33577899999998 9988733222100 001112788888888654
No 52
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=29.15 E-value=2.9e+02 Score=24.71 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=46.6
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccC----chhHHHHHHHHHHHhhhccchhhhhhcCCcEEEEEcC
Q 011293 38 PVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEA----PDKALRRIYLNLETLKANGDAYATQIQERLRIIVAGG 112 (489)
Q Consensus 38 ~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~----p~~~l~~l~~~l~~l~~~~~~~a~~~~~~~~IIv~GG 112 (489)
.+.||.=..| -....++....|....+ |++..-. |+...+ +.+..+ +..-...|.++|+
T Consensus 8 ~V~IimgS~S----D~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~-~~~~a~-----------~~g~~ViIa~AG~ 71 (169)
T 3trh_A 8 FVAILMGSDS----DLSTMETAFTELKSLGIPFEAHILSAHRTPKETVE-FVENAD-----------NRGCAVFIAAAGL 71 (169)
T ss_dssp EEEEEESCGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHH-HHHHHH-----------HTTEEEEEEEECS
T ss_pred cEEEEECcHH----hHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHH-HHHHHH-----------hCCCcEEEEECCh
Confidence 3555553333 34567777778887777 8876532 333222 222221 0011245779999
Q ss_pred chHHHHHHHHHhhccCCCCCcEEEeeCC
Q 011293 113 DGTAGWLLGVVCDLKLSHPPPIATVPLG 140 (489)
Q Consensus 113 DGTv~~vl~~l~~~~~~~~~plgiIP~G 140 (489)
.+-|--++.++. ..|.||+ |.-
T Consensus 72 aa~LpgvvA~~t-----~~PVIgV-P~~ 93 (169)
T 3trh_A 72 AAHLAGTIAAHT-----LKPVIGV-PMA 93 (169)
T ss_dssp SCCHHHHHHHTC-----SSCEEEE-ECC
T ss_pred hhhhHHHHHhcC-----CCCEEEe-ecC
Confidence 999999998875 2445554 543
No 53
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), nysgxrc structural genomics, NEW YORK SGX research center for struc genomics; 2.30A {Clostridium difficile}
Probab=28.94 E-value=1.4e+02 Score=28.74 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=30.7
Q ss_pred CCcEEEEEcCchHHHH-HHHHHhhccCCCCCcEEEeeCCCCCchhhh
Q 011293 103 ERLRIIVAGGDGTAGW-LLGVVCDLKLSHPPPIATVPLGTGNNLPFA 148 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~-vl~~l~~~~~~~~~plgiIP~GTGNDfArs 148 (489)
.....|+.|||-++.. .+.++.+. ..++++|=+-.--||-..
T Consensus 87 ~g~~pi~lGGdHsit~~~~~a~~~~----~~~l~vI~~DAH~Dl~~~ 129 (287)
T 3lhl_A 87 DSKVPFMIGGEHLVTLPAFKAVHEK----YNDIYVIHFDAHTDLREE 129 (287)
T ss_dssp TTCEEEEEESSGGGHHHHHHHHHHH----CSSEEEEEECSBCCCCSC
T ss_pred CCCeEEEeCCcchhhHHHHHHHHHh----cCCcEEEEecCCcccCcc
Confidence 4567889999999876 45666541 247999998888887543
No 54
>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F}
Probab=27.35 E-value=19 Score=34.88 Aligned_cols=13 Identities=54% Similarity=0.979 Sum_probs=11.5
Q ss_pred cEEEEEcCchHHH
Q 011293 105 LRIIVAGGDGTAG 117 (489)
Q Consensus 105 ~~IIv~GGDGTv~ 117 (489)
.+||||||+||-+
T Consensus 47 q~~i~~g~~~t~~ 59 (275)
T 3gw6_A 47 QRIIFCGGEGTSS 59 (275)
T ss_dssp CEEEEESSSSSST
T ss_pred cEEEEecCCCCCC
Confidence 5999999999965
No 55
>2x9a_A Attachment protein G3P; transmembrane, phage infection, phage recognition, HOST-VIRU interaction, virion; 2.47A {Enterobacteria phage IF1} PDB: 2x9b_A
Probab=26.81 E-value=16 Score=27.50 Aligned_cols=11 Identities=18% Similarity=0.126 Sum_probs=9.9
Q ss_pred EEEEEcCchHH
Q 011293 106 RIIVAGGDGTA 116 (489)
Q Consensus 106 ~IIv~GGDGTv 116 (489)
=|+|++||||+
T Consensus 40 GViVg~~dgtv 50 (65)
T 2x9a_A 40 GIGIGYDNDTS 50 (65)
T ss_dssp EEEEEETTTTE
T ss_pred eEEEECCCCCE
Confidence 49999999997
No 56
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=24.38 E-value=47 Score=29.22 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=26.7
Q ss_pred CcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcCc
Q 011293 132 PPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNAK 174 (489)
Q Consensus 132 ~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a~ 174 (489)
+-+-+|=+|| ||+.+..+++. ....+++.++++.+.+..
T Consensus 84 ~d~vvi~~G~-ND~~~~~~~~~---~~~~~~l~~li~~~~~~~ 122 (216)
T 2q0q_A 84 LDLVIIMLGT-NDTKAYFRRTP---LDIALGMSVLVTQVLTSA 122 (216)
T ss_dssp CSEEEEECCT-GGGSGGGCCCH---HHHHHHHHHHHHHHHTCT
T ss_pred CCEEEEEecC-cccchhcCCCH---HHHHHHHHHHHHHHHHhc
Confidence 3799999998 99987655552 122346777787776543
No 57
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A {Pseudomonas aeruginosa} SCOP: c.42.1.0
Probab=24.27 E-value=1.5e+02 Score=29.05 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=29.9
Q ss_pred CCcEEEEEcCchHHHH-HHHHHhhccCCCCCcEEEeeCCCCCchhh
Q 011293 103 ERLRIIVAGGDGTAGW-LLGVVCDLKLSHPPPIATVPLGTGNNLPF 147 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~-vl~~l~~~~~~~~~plgiIP~GTGNDfAr 147 (489)
.....|+.|||-++.+ .+.++.+. ..++++|=+-.--|+-.
T Consensus 118 ~g~~pi~lGGdHsit~~~~~al~~~----~~~l~vI~~DAH~Dl~~ 159 (319)
T 3nio_A 118 HGILPLTLGGDHTITLPILRAIXKX----HGXVGLVHVDAHADVND 159 (319)
T ss_dssp TTCEEEEECCCGGGHHHHHHHHHHH----HCSEEEEEECSSCCCCS
T ss_pred CCCEEEEECCcchhhHHHHHHHHhh----cCceEEEEEecCcccCC
Confidence 4567899999999886 45666531 24799998888888744
No 58
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Probab=24.26 E-value=1.8e+02 Score=28.52 Aligned_cols=38 Identities=11% Similarity=0.295 Sum_probs=29.2
Q ss_pred EEEEEcCchHHHH-HHHHHhhccCCCCCcEEEeeCCCCCchhh
Q 011293 106 RIIVAGGDGTAGW-LLGVVCDLKLSHPPPIATVPLGTGNNLPF 147 (489)
Q Consensus 106 ~IIv~GGDGTv~~-vl~~l~~~~~~~~~plgiIP~GTGNDfAr 147 (489)
..|+.|||-++.. .+.++.+ ...++++|=+-.--||-.
T Consensus 122 ~pi~lGGdHsit~~~~~al~~----~~~~~~vI~~DAH~Dl~~ 160 (322)
T 3m1r_A 122 VPLILGGDNSISYSTIKAIAQ----TKGTTAVIQFDAHHDVRN 160 (322)
T ss_dssp EEEEEESCTTHHHHHHHHHHH----HHCSEEEEEECSSCCCCC
T ss_pred eeEEeCCCccccHHHHHHHHH----hCCCeEEEEccCCccccC
Confidence 8899999999986 5566653 134799999988888855
No 59
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=23.92 E-value=88 Score=28.19 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=26.3
Q ss_pred cEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcC
Q 011293 133 PIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNA 173 (489)
Q Consensus 133 plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a 173 (489)
-+.+|=+|| ||+.+..+++. ....+++.++|+.+.+.
T Consensus 103 d~VvI~~Gt-ND~~~~~~~~~---~~~~~~l~~li~~ir~~ 139 (232)
T 3dci_A 103 DLVIIMLGT-NDIKPVHGGRA---EAAVSGMRRLAQIVETF 139 (232)
T ss_dssp SEEEEECCT-TTTSGGGTSSH---HHHHHHHHHHHHHHHHC
T ss_pred CEEEEEecc-CCCccccCCCH---HHHHHHHHHHHHHHHHh
Confidence 799999998 99988765442 12235677778777664
No 60
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=23.64 E-value=3e+02 Score=28.23 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=47.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEccC----chhHHHHHHHHHHHhhhccchhhhhhcC-CcEEEEE
Q 011293 37 CPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGEEA----PDKALRRIYLNLETLKANGDAYATQIQE-RLRIIVA 110 (489)
Q Consensus 37 ~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~~~----p~~~l~~l~~~l~~l~~~~~~~a~~~~~-~~~IIv~ 110 (489)
..+.||.=..| -....+.....|...++ |++..-. |....+ +.+..+ ...- ...|.++
T Consensus 266 ~~V~Ii~gs~S----D~~~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~-~~~~~~-----------~~g~~~viIa~A 329 (425)
T 2h31_A 266 CRVVVLMGSTS----DLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLR-IKAEYE-----------GDGIPTVFVAVA 329 (425)
T ss_dssp CEEEEEESCGG----GHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHH-HHHHHH-----------TTCCCEEEEEEC
T ss_pred CeEEEEecCcc----cHHHHHHHHHHHHHcCCceEEeeeeccCCHHHHHH-HHHHHH-----------HCCCCeEEEEEc
Confidence 34666654433 34566777777777777 8876532 333222 222221 0011 2467789
Q ss_pred cCchHHHHHHHHHhhccCCCCCcEEEeeC
Q 011293 111 GGDGTAGWLLGVVCDLKLSHPPPIATVPL 139 (489)
Q Consensus 111 GGDGTv~~vl~~l~~~~~~~~~plgiIP~ 139 (489)
||.|.|--|+.++. ..|+--+|.
T Consensus 330 G~~a~Lpgvva~~t------~~PVIgvP~ 352 (425)
T 2h31_A 330 GRSNGLGPVMSGNT------AYPVISCPP 352 (425)
T ss_dssp CSSCCHHHHHHHHC------SSCEEECCC
T ss_pred CcccchHhHHhccC------CCCEEEeeC
Confidence 99999999999885 344444564
No 61
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas aeruginosa} PDB: 3nip_A
Probab=21.35 E-value=2.4e+02 Score=27.66 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=30.6
Q ss_pred CCcEEEEEcCchHHHH-HHHHHhhccCCCCCcEEEeeCCCCCchhhh
Q 011293 103 ERLRIIVAGGDGTAGW-LLGVVCDLKLSHPPPIATVPLGTGNNLPFA 148 (489)
Q Consensus 103 ~~~~IIv~GGDGTv~~-vl~~l~~~~~~~~~plgiIP~GTGNDfArs 148 (489)
.....|+.|||-++.. .+.++.+ .. ++++|=+-.--|+-..
T Consensus 115 ~g~~pi~lGGdHsit~~~~~al~~----~~-~l~vI~~DAH~Dl~~~ 156 (326)
T 3niq_A 115 AGTLPLSVGGDHLVTLPIFRALGR----ER-PLGMVHFDAHSDTNDR 156 (326)
T ss_dssp TTCEEEEEESSGGGHHHHHHHHTS----SS-CEEEEEECSSCCCCCC
T ss_pred CCCEEEEeCCcchhhHHHHHHHHh----hC-CeeEEEccCcccccCC
Confidence 4567899999999986 4566653 23 8999998888887543
No 62
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=20.91 E-value=64 Score=27.93 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=32.0
Q ss_pred EEcCchHHHHHHHHHhhccCCCCCcEEEeeCCCCCchhhhccCCCCCCCCChHHHHHHHHHHHcC
Q 011293 109 VAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDRHAVEQFLRHVMNA 173 (489)
Q Consensus 109 v~GGDGTv~~vl~~l~~~~~~~~~plgiIP~GTGNDfArsLG~~~~~~~~~~~~l~~~l~~i~~a 173 (489)
.+||+.|... +..+...-...++-+.+|=+|| ||+.+ +++. ....+++.++++.+.+.
T Consensus 41 g~~G~~~~~~-~~~~~~~~~~~~pd~Vii~~G~-ND~~~--~~~~---~~~~~~l~~li~~~~~~ 98 (190)
T 1ivn_A 41 SISGDTSQQG-LARLPALLKQHQPRWVLVELGG-NDGLR--GFQP---QQTEQTLRQILQDVKAA 98 (190)
T ss_dssp CCTTCCHHHH-HHHHHHHHHHHCCSEEEEECCT-TTTSS--SCCH---HHHHHHHHHHHHHHHHT
T ss_pred CCCCchHHHH-HHHHHHHHHhcCCCEEEEEeec-ccccc--CCCH---HHHHHHHHHHHHHHHHc
Confidence 5566666432 2222211001256899999998 99875 3321 11234677778777654
No 63
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.81 E-value=1.7e+02 Score=23.00 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=34.1
Q ss_pred ceeecCCCCCc-----ccCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhccCCe-EEEEc-cCchhHHH
Q 011293 19 SYVLLPDSESE-----TVPDVPRCPVLVFINSKSGGQLGGDLLVTYRSLLNKNQV-FDVGE-EAPDKALR 81 (489)
Q Consensus 19 ~~~~~~~~~~~-----~~~~~~~~~vlvivNP~SG~~~g~~~l~~~~~~L~~~~V-~dl~~-~~p~~~l~ 81 (489)
.||-...|.+. -.-....+|+.||+|-.| ..-...++..-....| ||+.. ++|.+..+
T Consensus 29 ryirtatssqdirdiiksmkdngkplvvfvngas-----qndvnefqneakkegvsydvlkstdpeeltq 93 (112)
T 2lnd_A 29 RYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGAS-----QNDVNEFQNEAKKEGVSYDVLKSTDPEELTQ 93 (112)
T ss_dssp TTEEEECSHHHHHHHHHHHTTCCSCEEEEECSCC-----HHHHHHHHHHHHHHTCEEEEEECCCHHHHHH
T ss_pred ceeeeccchhhHHHHHHHHHhcCCeEEEEecCcc-----cccHHHHHHHHHhcCcchhhhccCCHHHHHH
Confidence 56655554422 111345689999999544 2334455555555567 88765 67776544
No 64
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=20.72 E-value=4.4e+02 Score=23.27 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHhccCCe-EEEEccCchhHHHHHHHHHHHhhhccchhhhhhc-CCcEEEEEcCchHHHHHHHHHh
Q 011293 52 GGDLLVTYRSLLNKNQV-FDVGEEAPDKALRRIYLNLETLKANGDAYATQIQ-ERLRIIVAGGDGTAGWLLGVVC 124 (489)
Q Consensus 52 g~~~l~~~~~~L~~~~V-~dl~~~~p~~~l~~l~~~l~~l~~~~~~~a~~~~-~~~~IIv~GGDGTv~~vl~~l~ 124 (489)
-....++....|....+ |++..-..+...+++.+-.++. .... -...|.++|+.+-|--++.++.
T Consensus 14 D~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a--------~~~~~~~ViIa~AG~aa~LpgvvA~~t 80 (159)
T 3rg8_A 14 DMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEY--------EALDRPKLYITIAGRSNALSGFVDGFV 80 (159)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHH--------HTSCSCEEEEEECCSSCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHh--------hhcCCCcEEEEECCchhhhHHHHHhcc
Confidence 34567777778887777 8876533222222122111100 0000 1345778999999999999875
No 65
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=20.65 E-value=1.7e+02 Score=32.50 Aligned_cols=43 Identities=19% Similarity=0.057 Sum_probs=28.8
Q ss_pred CcEEEEEcCchHHHHHHH----------HHhhc--------cCCCCCcEEEeeCCCCCchh
Q 011293 104 RLRIIVAGGDGTAGWLLG----------VVCDL--------KLSHPPPIATVPLGTGNNLP 146 (489)
Q Consensus 104 ~~~IIv~GGDGTv~~vl~----------~l~~~--------~~~~~~plgiIP~GTGNDfA 146 (489)
=+.+|++|||||+.-+.- .|.+. +....+++--||-==-||++
T Consensus 110 Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~ 170 (762)
T 3o8l_A 110 ITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFC 170 (762)
T ss_dssp CCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCS
T ss_pred CCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCC
Confidence 468999999999875431 11110 01236788889988889987
Done!