Query 011296
Match_columns 489
No_of_seqs 234 out of 1997
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 23:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 7.9E-59 1.7E-63 457.3 53.0 436 31-470 12-451 (455)
2 PRK10189 MATE family multidrug 100.0 4.7E-54 1E-58 427.6 54.7 431 34-467 27-467 (478)
3 PRK00187 multidrug efflux prot 100.0 2.4E-53 5.2E-58 422.7 54.9 428 32-462 6-444 (464)
4 PRK01766 multidrug efflux prot 100.0 4.2E-51 9.1E-56 408.2 55.0 433 31-466 7-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 1.9E-51 4.2E-56 408.5 51.6 428 32-465 8-438 (453)
6 PRK10367 DNA-damage-inducible 100.0 5.7E-51 1.2E-55 401.8 51.7 424 32-466 5-434 (441)
7 KOG1347 Uncharacterized membra 100.0 1.1E-39 2.3E-44 318.4 34.9 448 31-480 23-470 (473)
8 TIGR01695 mviN integral membra 100.0 1.5E-36 3.2E-41 308.0 50.9 413 38-462 2-428 (502)
9 TIGR00797 matE putative efflux 100.0 1E-36 2.3E-41 293.7 41.7 338 44-384 1-341 (342)
10 TIGR02900 spore_V_B stage V sp 100.0 1.8E-36 3.9E-41 306.5 45.0 414 39-461 2-433 (488)
11 PRK15099 O-antigen translocase 100.0 1.2E-33 2.5E-38 279.2 43.3 404 38-460 3-410 (416)
12 PF03023 MVIN: MviN-like prote 100.0 5.1E-29 1.1E-33 246.1 48.6 386 66-462 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 2.5E-28 5.5E-33 236.4 49.5 420 35-462 6-437 (518)
14 PRK10459 colanic acid exporter 100.0 3.3E-26 7.2E-31 231.3 44.9 398 35-461 4-404 (492)
15 COG2244 RfbX Membrane protein 99.9 4.6E-24 1E-28 215.2 39.2 391 33-446 3-396 (480)
16 PRK10367 DNA-damage-inducible 99.9 1.2E-21 2.6E-26 193.6 27.1 206 254-461 6-211 (441)
17 PRK00187 multidrug efflux prot 99.9 2E-21 4.2E-26 193.9 26.8 206 253-462 6-215 (464)
18 COG0534 NorM Na+-driven multid 99.9 2.9E-21 6.2E-26 190.9 27.7 207 254-463 14-222 (455)
19 PRK10189 MATE family multidrug 99.9 1.5E-21 3.3E-26 194.7 25.0 204 254-460 26-235 (478)
20 PRK09575 vmrA multidrug efflux 99.9 5.9E-21 1.3E-25 190.1 25.7 207 254-462 9-215 (453)
21 PRK01766 multidrug efflux prot 99.9 2.6E-20 5.7E-25 186.3 27.8 207 253-462 8-218 (456)
22 TIGR01695 mviN integral membra 99.8 1.2E-17 2.5E-22 169.8 29.6 206 31-238 218-428 (502)
23 TIGR00797 matE putative efflux 99.8 8.5E-17 1.8E-21 155.1 25.5 194 265-461 1-196 (342)
24 PF01554 MatE: MatE; InterPro 99.8 9.5E-19 2.1E-23 149.3 9.9 162 265-428 1-162 (162)
25 PF01943 Polysacc_synt: Polysa 99.8 2.5E-15 5.5E-20 139.9 30.8 271 39-326 2-273 (273)
26 PF03023 MVIN: MviN-like prote 99.8 1.6E-15 3.4E-20 150.3 29.9 207 32-240 194-405 (451)
27 PF01554 MatE: MatE; InterPro 99.7 3.2E-18 6.8E-23 146.1 6.5 160 44-204 1-162 (162)
28 TIGR02900 spore_V_B stage V sp 99.7 1.3E-15 2.9E-20 154.2 25.4 204 30-238 219-434 (488)
29 COG0728 MviN Uncharacterized m 99.7 5.1E-14 1.1E-18 137.4 33.5 214 25-240 221-439 (518)
30 PRK10459 colanic acid exporter 99.7 6.5E-14 1.4E-18 141.8 34.2 200 32-237 203-404 (492)
31 PRK15099 O-antigen translocase 99.7 1.6E-14 3.5E-19 142.8 24.5 203 29-238 208-412 (416)
32 COG2244 RfbX Membrane protein 99.6 6.9E-13 1.5E-17 134.0 25.8 197 31-234 208-406 (480)
33 PF13440 Polysacc_synt_3: Poly 99.6 6.8E-12 1.5E-16 115.2 28.8 247 54-324 2-250 (251)
34 KOG1347 Uncharacterized membra 99.3 9.9E-11 2.2E-15 115.3 20.0 206 253-462 24-230 (473)
35 PF04506 Rft-1: Rft protein; 99.3 1.9E-08 4E-13 100.8 32.1 420 40-461 5-469 (549)
36 KOG2864 Nuclear division RFT1 99.0 8E-06 1.7E-10 76.9 33.3 416 34-461 6-448 (530)
37 PF07260 ANKH: Progressive ank 98.9 3.5E-06 7.6E-11 75.8 28.0 316 33-357 8-343 (345)
38 PF04506 Rft-1: Rft protein; 98.5 2.6E-05 5.6E-10 78.5 20.5 205 34-239 251-471 (549)
39 PF14667 Polysacc_synt_C: Poly 98.3 1.3E-05 2.8E-10 66.6 12.8 80 158-239 2-81 (146)
40 PF01943 Polysacc_synt: Polysa 98.2 0.00037 8E-09 64.5 20.4 187 261-461 3-190 (273)
41 KOG2864 Nuclear division RFT1 98.1 0.00019 4.2E-09 67.8 15.3 203 36-240 239-451 (530)
42 PF14667 Polysacc_synt_C: Poly 98.0 5.6E-05 1.2E-09 62.8 10.0 79 381-462 2-80 (146)
43 PF07260 ANKH: Progressive ank 97.9 0.0093 2E-07 54.3 21.9 158 254-417 8-168 (345)
44 PF13440 Polysacc_synt_3: Poly 97.8 0.0064 1.4E-07 55.4 20.4 162 282-460 9-171 (251)
45 COG4267 Predicted membrane pro 97.3 0.15 3.3E-06 47.6 32.0 318 86-431 74-414 (467)
46 COG4267 Predicted membrane pro 76.6 74 0.0016 30.6 19.7 136 308-460 74-209 (467)
47 PF05975 EcsB: Bacterial ABC t 70.6 1.1E+02 0.0024 29.9 15.9 37 329-365 88-124 (386)
48 PF05977 MFS_3: Transmembrane 66.8 1.6E+02 0.0034 30.2 37.9 43 42-84 16-60 (524)
49 PF04505 Dispanin: Interferon- 65.9 41 0.00089 24.4 6.9 39 313-351 35-73 (82)
50 PF14184 YrvL: Regulatory prot 65.7 69 0.0015 25.7 12.2 103 118-222 6-109 (132)
51 PF10337 DUF2422: Protein of u 45.3 3.1E+02 0.0067 27.6 11.7 30 31-60 12-41 (459)
52 PF06609 TRI12: Fungal trichot 40.7 4.5E+02 0.0098 27.5 34.0 49 32-80 40-89 (599)
53 TIGR00822 EII-Sor PTS system, 32.6 4E+02 0.0086 24.5 16.0 89 308-399 110-199 (265)
54 PRK01637 hypothetical protein; 31.0 4.4E+02 0.0094 24.4 18.7 15 317-331 111-125 (286)
55 PF10160 Tmemb_40: Predicted m 30.9 4.1E+02 0.009 24.2 10.9 83 329-414 109-191 (261)
56 TIGR03141 cytochro_ccmD heme e 28.0 1.6E+02 0.0034 18.4 4.6 21 440-460 8-28 (45)
57 PF00689 Cation_ATPase_C: Cati 27.8 3.7E+02 0.008 22.6 10.1 24 32-55 48-71 (182)
58 COG5393 Predicted membrane pro 26.2 3.2E+02 0.0069 21.3 6.3 28 439-466 84-111 (131)
59 PF05684 DUF819: Protein of un 24.6 6.6E+02 0.014 24.5 12.8 36 302-343 51-86 (378)
60 COG3715 ManY Phosphotransferas 23.1 5.9E+02 0.013 23.3 13.5 88 310-400 112-200 (265)
61 PTZ00370 STEVOR; Provisional 22.7 1.4E+02 0.003 27.5 4.2 35 436-470 255-292 (296)
62 TIGR00383 corA magnesium Mg(2+ 22.2 2.2E+02 0.0048 26.8 6.0 56 406-464 254-317 (318)
63 PF03547 Mem_trans: Membrane t 21.9 5.1E+02 0.011 25.0 8.7 16 342-357 34-49 (385)
64 KOG2468 Dolichol kinase [Lipid 21.6 8.2E+02 0.018 24.4 11.2 51 303-353 410-460 (510)
65 PRK09546 zntB zinc transporter 21.2 2.6E+02 0.0057 26.5 6.2 21 444-464 303-323 (324)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=7.9e-59 Score=457.34 Aligned_cols=436 Identities=22% Similarity=0.336 Sum_probs=413.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccc
Q 011296 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (489)
Q Consensus 31 ~~~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 110 (489)
.++..|+++++++|++++++++.+++++|+.++||+|++++|+.+++.++..+. ..+..|++.|+++.+||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 467999999999999999999999999999999999999999999999999987 9999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHH
Q 011296 111 RIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (489)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (489)
++++..++++.++++++++..++ +.+.++++.+++.++|+.+.+.+|+++..++.|+..++..+.+.+|+.|++|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999777776 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhHhhcc-cC-CCcchhHHHHHHHHHHHHHHHHHHHHhccc-cccccCCCChHhHhcHHHHHHHHhhH
Q 011296 190 SSCAALCLHIPICWSLVYK-SG-LGNLGGALAIGISNWLNVTFLAIYMKFSTA-CAESRVPISMELFQGIGEFFHFAIPS 266 (489)
Q Consensus 190 ~~i~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~l~~~~~p~ 266 (489)
.++.++++|+++|++|+++ ++ +|+.|+++||++++.+.+++...+++++++ ......+..+.+++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 999999999999999999999999988775 22333444455668899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 011296 267 AVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAV 346 (489)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 346 (489)
++++......+...+.+++++|++ ++|+|+++.++.++.++++.|++++..|+++|++|+||++++++..+.+.++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGTV--ALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999964 679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhHhHH
Q 011296 347 TETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTA 426 (489)
Q Consensus 347 ~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~ 426 (489)
.+++..+++++++++++.++|++|+|+.+.+..++++.+...++++.+.+..+++||.||+|.++..++.+.|++.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHhhcCHHHHHHH
Q 011296 427 AILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASK 470 (489)
Q Consensus 427 ~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (489)
|++.+.. +|..|+|++...++.++.++..+++++.+|+++..+
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVA 451 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 9998876 999999999999999999999999999988877553
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=4.7e-54 Score=427.57 Aligned_cols=431 Identities=16% Similarity=0.190 Sum_probs=397.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchHH
Q 011296 34 EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIG 113 (489)
Q Consensus 34 ~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~ 113 (489)
..|+++++++|.++++++..+.+.+|+.+++++|++++|+++++.++..+. ..+..|++++.++++||++|+||+++++
T Consensus 27 ~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~~ 105 (478)
T PRK10189 27 FWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRAR 105 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 489999999999999999999999999999999999999999999999886 8899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHHH
Q 011296 114 TQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIG--QDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS 190 (489)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (489)
+..++++.++..++++.+++ +.+.++++.++. .|+|+.+.+.+|+++..++.|+..+...+.+.+|+.|+++.++..
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i 185 (478)
T PRK10189 106 AAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLI 185 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHH
Confidence 99999999999999988876 778899999884 689999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhHhhcc----cCCCcchhHHHHHHHHHHHHHHHHHHHHhccc--cccccCC-CChHhHhcHHHHHHHH
Q 011296 191 SCAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTA--CAESRVP-ISMELFQGIGEFFHFA 263 (489)
Q Consensus 191 ~i~~~~~~i~~~~~li~~----~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~k~l~~~~ 263 (489)
++...++|++++++++++ +++|+.|+++|+.+++.+..++..+++.++++ .+...++ +++.+++.+|+++++|
T Consensus 186 ~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG 265 (478)
T PRK10189 186 NGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIG 265 (478)
T ss_pred HHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHh
Confidence 999999999999999975 37999999999999999998887666654321 1111111 2223557899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 011296 264 IPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIF 343 (489)
Q Consensus 264 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~ 343 (489)
+|.+++...........+.+++.+++. ++|+++++.++.++.+++..|++++..|.++|++|+||++++|+..+.+.+
T Consensus 266 ~P~~~~~~~~~~~~~~~~~~~~~~G~~--~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~ 343 (478)
T PRK10189 266 IPASIESVLFNGGKLLTQMFVAGMGTS--VIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFW 343 (478)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999888888888888888864 679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhH
Q 011296 344 MAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGI 423 (489)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i 423 (489)
+++.++..++++++++++++..+|++|+|+.+.+..++++.+...++++++.+..+.++|.||++.++..++.+.|++.+
T Consensus 344 ~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~i 423 (478)
T PRK10189 344 LSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRV 423 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHhhcCHHHH
Q 011296 424 PTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQ 467 (489)
Q Consensus 424 ~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 467 (489)
|+.|++....++|..|+|++..+++.+.+++..+++++.+|+++
T Consensus 424 p~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 424 VAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 99999988778999999999999999999999999999999983
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=2.4e-53 Score=422.65 Aligned_cols=428 Identities=21% Similarity=0.313 Sum_probs=392.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccch
Q 011296 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (489)
Q Consensus 32 ~~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 111 (489)
++..|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++..+. ..+..|+++|.++.+||++|+||+++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 66899999999999999999999999999999999999999999999999987 78899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHHHH
Q 011296 112 IGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSS 191 (489)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 191 (489)
+++..++++.+.++++++..++..+.++++.+++.|+|+.+.+.+|+++..++.|+..+...+++++|+.|+++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999998887775578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhHhhcc----cCCCcchhHHHHHHHHHHHHHHHHHHHHhcccccc--ccCCCChHhHhcHHHHHHHHhh
Q 011296 192 CAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAE--SRVPISMELFQGIGEFFHFAIP 265 (489)
Q Consensus 192 i~~~~~~i~~~~~li~~----~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~l~~~~~p 265 (489)
+...++|+++|++++++ +++|+.|+++|+.+++....+....+++++++.++ .++++.+.+++.+|++++.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 99999999999999975 36899999999999999888777666665433211 1222223455678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 011296 266 SAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMA 345 (489)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 345 (489)
.+++++.+.....++..+++++++. ++|+++++.++..+...+..|++++..+.++|++|+||++++++..+.++.++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G~~--alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALGST--QLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999864 67999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhchhhhhcccCC--cH---HHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHH
Q 011296 346 VTETIVVSATLFASRRVFGYVFSN--EK---QVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYL 420 (489)
Q Consensus 346 ~~~~~~~~~~~~~~~~~i~~l~~~--d~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i 420 (489)
+.++++++++++++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+.+++.||++.++..++++.|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~ 402 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWL 402 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHH
Confidence 999999999999999999999964 44 7889999999999999999999999999999999999999999999899
Q ss_pred hhHhHHHHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHhhc
Q 011296 421 CGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 462 (489)
Q Consensus 421 ~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 462 (489)
+++|+.|++.+.+++|+.|+|+++.+++.+..++...+++.+
T Consensus 403 ~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 403 VGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred HHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988889999999999999999988877766443
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=4.2e-51 Score=408.17 Aligned_cols=433 Identities=20% Similarity=0.324 Sum_probs=398.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccc
Q 011296 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (489)
Q Consensus 31 ~~~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 110 (489)
.++.+|++++.++|.+++++...+.+.+|+.+++++|++++++++.+.++.... ..+..|++.+..+.+||++|++|++
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChH
Confidence 377899999999999999999999999999999999999999999999987765 7788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHH
Q 011296 111 RIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (489)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (489)
+.++..+.++.+.+.++++..++ +.+.++++.+++.++|+.+.+..|+++..++.++..+...+.+++|+.|+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999888777 67788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhHhhcc----cCCCcchhHHHHHHHHHHHHHHHHHHHHhccccc--cccCCCChHhHhcHHHHHHHH
Q 011296 190 SSCAALCLHIPICWSLVYK----SGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA--ESRVPISMELFQGIGEFFHFA 263 (489)
Q Consensus 190 ~~i~~~~~~i~~~~~li~~----~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~l~~~~ 263 (489)
.+++..++|++++++++++ +++|+.|+++|+.+++++..++..++++++++.+ +.+.++.+.+++..|++++.+
T Consensus 166 ~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~ 245 (456)
T PRK01766 166 IGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLG 245 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHcc
Confidence 9999999999999999864 4689999999999999999999888887654321 112222233456789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 011296 264 IPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIF 343 (489)
Q Consensus 264 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~ 343 (489)
+|.++++..+...+..+..+++++++. ++++++++.++.++..++..|++.+..+.++|++|+||++++++..+.+++
T Consensus 246 ~P~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~ 323 (456)
T PRK01766 246 LPIGLAIFFEVSLFAVVTLLVSPLGTV--TVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLA 323 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998754 579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhH
Q 011296 344 MAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGI 423 (489)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i 423 (489)
+++.++++.+++++.+++++..+|++|+|+.+.+..++++..+..++++++.+..+.++|.||++.++..++++.|++++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i 403 (456)
T PRK01766 324 VGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGL 403 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred hHHHHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHhhcCHHH
Q 011296 424 PTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEK 466 (489)
Q Consensus 424 ~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 466 (489)
|+.+++.+.+++|..|+|+++.+++.+.+++..+++++.+|+.
T Consensus 404 ~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 404 PLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888899999999999999999999888888776654
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.9e-51 Score=408.46 Aligned_cols=428 Identities=14% Similarity=0.130 Sum_probs=390.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccc
Q 011296 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (489)
Q Consensus 32 ~~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 110 (489)
++..|++++.++|.+++++...+++++|+.+++++ |++++++++.+.++..+. ..+..+++.+.+++++|++|+||+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 45789999999999999999999999999999996 999999999999999886 7788899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHH
Q 011296 111 RIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (489)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (489)
++++.+++++.++.+++++..++ +.++++++.+++.++|+.+.+.+|+++..++.|+..+.....+.+|+.|+++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999988877 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHhHhcHHHHHHHHhhHHHH
Q 011296 190 SSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVM 269 (489)
Q Consensus 190 ~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~~~ 269 (489)
.++...++|+++++++++.+++|+.|+++|+.+++.+..++.++++++++...+...+..+.+++.+|+++++|.|.+++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHH
Confidence 99999999999999999888999999999999999999998877776544322222222234556789999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHH
Q 011296 270 ICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTET 349 (489)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 349 (489)
+............+++.+++.+ ++|+++++.++..+..++..|++++..|.+||++|+||+|++++..+.++++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~-~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYGSAL-TVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 9998888888888888888643 679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchhhhhcccCC-cHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhHhHHHH
Q 011296 350 IVVSATLFASRRVFGYVFSN-EKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAI 428 (489)
Q Consensus 350 ~~~~~~~~~~~~~i~~l~~~-d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~ 428 (489)
++.+++++.+++++..+|+. |||+.+.+.+++++.+++.++++++.+..+.+||.||++.++..++.. +++++|..|+
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~l 404 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFI 404 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHH
Confidence 99999999999999999995 799999999999999999999999999999999999999999999886 6789999999
Q ss_pred HHhhcCCCcchhhHHHHHhHHHHHHHHHHHHhhcCHH
Q 011296 429 LGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWE 465 (489)
Q Consensus 429 l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 465 (489)
+... +|..|+|+++.+++.+..++..+++++ +|+
T Consensus 405 l~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~-~~~ 438 (453)
T PRK09575 405 LPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR-DVK 438 (453)
T ss_pred HHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH-HHH
Confidence 8654 799999999999999988887766653 444
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=5.7e-51 Score=401.79 Aligned_cols=424 Identities=15% Similarity=0.119 Sum_probs=373.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccc
Q 011296 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (489)
Q Consensus 32 ~~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 110 (489)
++..|+++++++|.++++++..+++.+|+.+++|+ |++++++++++.++..+. ..+..+++.+.++.+||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45689999999999999999999999999999999 788999999999999987 8889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHH
Q 011296 111 RIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (489)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (489)
++++..++++.++++++++..++ ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+...+.+.+|+.|+++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999888776 77889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHh-HhcHHHHHHHHhhHHH
Q 011296 190 SSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMEL-FQGIGEFFHFAIPSAV 268 (489)
Q Consensus 190 ~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~l~~~~~p~~~ 268 (489)
.+++..++|+++++++++++++|+.|+++||.+++.+..++..++++++++.++...+..+++ ++.+|+++++|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 999999999999999999889999999999999999999888777765432211111111112 2468999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHH
Q 011296 269 MICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTE 348 (489)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 348 (489)
++......+...+.+++++++. ++|+|+++.++.++.+++..|++++..|.++|++|+||+|++|+..+.+.+++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G~~--alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLGSD--IIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999864 67999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccC---cchhhHHHHHHHHHHhhHhH
Q 011296 349 TIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCG---WQNIAAFVNLGAFYLCGIPT 425 (489)
Q Consensus 349 ~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~i~~i~~ 425 (489)
+..++++++.+++++..+|++|+|+.+.+..++++.+...+......+..+.+++.+ |++.++..++++.|+..++.
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~ 401 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL 401 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876443334444444455555 59999999999866422222
Q ss_pred HHHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHhhcCHHH
Q 011296 426 AAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEK 466 (489)
Q Consensus 426 ~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 466 (489)
+++|..|+|++..+++.++.++..++++++ |+|
T Consensus 402 -------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 402 -------PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred -------HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 247999999999999999999988877654 743
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=318.45 Aligned_cols=448 Identities=45% Similarity=0.760 Sum_probs=426.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccc
Q 011296 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (489)
Q Consensus 31 ~~~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 110 (489)
.....|++++++.|.++....+.+.+.+++.++||+|+.++++.+++.+..+..+..+..|+..+..+.++|++|+++++
T Consensus 23 ~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~ 102 (473)
T KOG1347|consen 23 LVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFT 102 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccc
Confidence 36789999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHHH
Q 011296 111 RIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS 190 (489)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (489)
......+++.......+++...++.+.++++..++.++++...+..|.++..+..+.+.....+..++|+++...+..+.
T Consensus 103 ~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 103 ALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHhHhcHHHHHHHHhhHHHHH
Q 011296 191 SCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMI 270 (489)
Q Consensus 191 ~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~~~~ 270 (489)
.....++|+++++++++.+++|..|++++..+++.+.......|..... ....|..++.+ ++.++++++.++|.+++.
T Consensus 183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~mi 260 (473)
T KOG1347|consen 183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMI 260 (473)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchhee
Confidence 9999999999999999999999999999999999999999988887655 45566666666 789999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHH
Q 011296 271 CLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETI 350 (489)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 350 (489)
..+++.+.+..+..+.++++...+++.++..++....++++.+++.+...++++.+|++|++++|.....+...++.++.
T Consensus 261 clE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~ 340 (473)
T KOG1347|consen 261 CLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGA 340 (473)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999997778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhHhHHHHHH
Q 011296 351 VVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILG 430 (489)
Q Consensus 351 ~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~ 430 (489)
..+..+...++.+..+|++|+|+.+...+..++++.+.+.++.+.+..+..++.|+++...+.++.+..++++|+...+.
T Consensus 341 ~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~ 420 (473)
T KOG1347|consen 341 SLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLG 420 (473)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchhhHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhcCCC
Q 011296 431 FWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGRS 480 (489)
Q Consensus 431 ~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (489)
+..++|..|+|.+...+..+..........+++|++...+++++......
T Consensus 421 ~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~ 470 (473)
T KOG1347|consen 421 FFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLV 470 (473)
T ss_pred EEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhcc
Confidence 88999999999999999888889999999999999999999888765443
No 8
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.5e-36 Score=308.04 Aligned_cols=413 Identities=12% Similarity=0.049 Sum_probs=346.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhc-cChHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhCCcccchHHH
Q 011296 38 QGYIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLAL-SSTAMAISLASVTGFSVL-LGMASALETLCGQAYGAQQYQRIGT 114 (489)
Q Consensus 38 l~~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~-~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~ 114 (489)
+.|.+.-..++++++.+.+++|..+++| +|++++ ++++.+.++...+..... .|++++..+...++.+++ +++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5678889999999999999999999999 599999 899999999876523333 468888777777664332 57777
Q ss_pred HHHHHHHHHHHHHH-HHHHH-HHhHHHHHHHc--CCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHHH
Q 011296 115 QTYTAIFCLFLVCF-PLSFL-WIYAGKLLVLI--GQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS 190 (489)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (489)
.+.++.......+. +..++ +.+++++..++ +.+++..+.+.+|+++..++.++..+....++.+|+.++++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77776665554444 34444 67788888877 4567777889999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhHhhcccCCCcchhH--HHHHHHHHHHHHHHHHHHHhccccccccCCCChHhHhcHHHHHHHHhhHHH
Q 011296 191 SCAALCLHIPICWSLVYKSGLGNLGGA--LAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAV 268 (489)
Q Consensus 191 ~i~~~~~~i~~~~~li~~~~~g~~g~a--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~~ 268 (489)
++..+++++...+++. .++|..|++ +++++++.+..++.+.+.+|++...+. ++ +.+++.+|++++++.|..+
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~k~~l~~~~p~~~ 234 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKP--RF-NFRDPGLKRFLKLFLPTTL 234 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccC--cC-CCCChhHHHHHHHHHHHHH
Confidence 9999888877544443 578999988 999999999998887777654421111 11 1133578999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHH
Q 011296 269 MICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYA-IPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVT 347 (489)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~-~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 347 (489)
++....+....|..+.+.+++. ++++|+.+.++.++... +..+++++..|.+++++|+||++++++..+++.++...
T Consensus 235 ~~~~~~~~~~id~~~~~~~~~~--~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~ 312 (502)
T TIGR01695 235 GSSASQITLLINTALASFLEIG--SVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLL 312 (502)
T ss_pred HHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999887766543 56899999999988765 67799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhhhhcccCC----cHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhH
Q 011296 348 ETIVVSATLFASRRVFGYVFSN----EKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGI 423 (489)
Q Consensus 348 ~~~~~~~~~~~~~~~i~~l~~~----d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i 423 (489)
++.|+++++..+++++..+|.+ |+|..+.+..++++++++.++.+++.+..+.+++.||+|.++..++.+ .++++
T Consensus 313 ~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i 391 (502)
T TIGR01695 313 LTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNA 391 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHH
Confidence 9999999999999999999865 567888899999999999999999999999999999999999999997 67899
Q ss_pred hHHHHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHhhc
Q 011296 424 PTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 462 (489)
Q Consensus 424 ~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 462 (489)
++.+++... +|..|+|+++.+++.+..++..++++|+
T Consensus 392 ~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 392 LLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988654 8999999999999999988887777654
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1e-36 Score=293.73 Aligned_cols=338 Identities=26% Similarity=0.421 Sum_probs=307.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchHHHHHHHHHHHH
Q 011296 44 PMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCL 123 (489)
Q Consensus 44 p~~~~~~~~~~~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 123 (489)
|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++++..+.++++.|++|+++.++..+..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988876 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhhhhhh
Q 011296 124 FLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPIC 202 (489)
Q Consensus 124 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 202 (489)
...+++.+++ +.+.+++..+++.+++..+.+..++++..++.++.+......+.+|+.|+++.....++.+.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998887 788999998888788888899999999999999999999999999999999999999999999999999
Q ss_pred hHhhc-ccC-CCcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHhHhcHHHHHHHHhhHHHHHHHHHHHHHHH
Q 011296 203 WSLVY-KSG-LGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELL 280 (489)
Q Consensus 203 ~~li~-~~~-~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~~~~~~~~~~~~~~ 280 (489)
+++++ .++ +|+.|+++++.+++++..++..++.+++++.+..+++..+.+++..|+++++++|.+++++..++...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99887 566 7899999999999999999888777764433222222233345678999999999999999999999999
Q ss_pred HHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 011296 281 ILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASR 360 (489)
Q Consensus 281 ~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (489)
..+++.++++ ++++|+++.++.++...++.+++++..|.+++++|+||+++.++..++++++.+.++++.++++.+++
T Consensus 240 ~~i~~~~g~~--~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLGSI--ALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888643 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCcHHHHHHHHHHHHHH
Q 011296 361 RVFGYVFSNEKQVVDYVTTMAPLV 384 (489)
Q Consensus 361 ~~i~~l~~~d~~~~~~~~~~l~~~ 384 (489)
+++.++|++|||+.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999998888764
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=1.8e-36 Score=306.46 Aligned_cols=414 Identities=13% Similarity=0.090 Sum_probs=347.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchHHHHHH
Q 011296 39 GYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTY 117 (489)
Q Consensus 39 ~~~~~p~~~~~~~~~~~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 117 (489)
.+.+.|.+++++...+.+++|+.+++|+ |++++|+++.+.++..+.......|++++..+.++|..|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 4678999999999999999999999995 999999999999998876444567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhh
Q 011296 118 TAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALC 196 (489)
Q Consensus 118 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 196 (489)
+++.+..+.+++..++ +.+.+++...++.+++. ..++++..+..++..+.....+.+|+.++.+.....++.+.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999888776 66677777666655543 246788889999999999999999999999999999999999
Q ss_pred hhhhhhhHhhc-----ccCCCcchhHHHHHHHHHHHHHHHHHHHHhccccc--cccCCCChHhHhcHHHHHHHHhhHHHH
Q 011296 197 LHIPICWSLVY-----KSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACA--ESRVPISMELFQGIGEFFHFAIPSAVM 269 (489)
Q Consensus 197 ~~i~~~~~li~-----~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~l~~~~~p~~~~ 269 (489)
+|+.++..++. ..+.|+.|+++++.+++.+..++.+.+.+++++.+ ..+.+.++.+++.+|+++++++|.+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 99877665543 23467888889999999999998776665543311 111112233456789999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCc-----h---hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHH
Q 011296 270 ICLEWWSFELLILMSGLLPNP-----Q---LETSVL-SVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYA 340 (489)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~-----~---~~~a~~-~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~ 340 (489)
++...+....|..++++..+. . ...+.| +++.++.++...+..+++++..|.+++++|+||.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998887654211 1 112223 4566778888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHH
Q 011296 341 VIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYL 420 (489)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i 420 (489)
+.+++..++.|+++++..+++++..+|.++++ +.++++++++..++.+++.+..+.+++.||+|.+++.++.+ .+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AI 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HH
Confidence 99999999999999999999999998876543 46789999999999999999999999999999999999998 68
Q ss_pred hhHhHHHHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHhh
Q 011296 421 CGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 461 (489)
Q Consensus 421 ~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 461 (489)
+++++.+.+...+++|..|+|+++.+++.+..++..+..+|
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988864467999999999999999999988887765
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=1.2e-33 Score=279.15 Aligned_cols=404 Identities=11% Similarity=-0.007 Sum_probs=339.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchHHHHH
Q 011296 38 QGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQT 116 (489)
Q Consensus 38 l~~~~~p~~~~~~~~~~~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 116 (489)
+.|.+.....+++...+.+++-..+++|+ |++++|.++...++..++......|++++.++.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 56788899999999999999999999996 9999999999999998775666889999999999988 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHh
Q 011296 117 YTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAAL 195 (489)
Q Consensus 117 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 195 (489)
++++.+.+..+++.+++ +.+.+|+...++.+++. ..+..+..+..++..+.....+.+|+.++.+.+....+.+.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877 88889998877766642 24556666666677888899999999999999999999999
Q ss_pred hhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHhHhcHHHHHHHHhhHHHHHHHHHH
Q 011296 196 CLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWW 275 (489)
Q Consensus 196 ~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~~~~~~~~~ 275 (489)
++|+.+ +++.+. ..|+.|+++|+++++.+..+...++++|+++....+.++ +.+++.+|+++++|.|..+++...++
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 444432 249999999999999999888777776544321111111 22446789999999999999999999
Q ss_pred HHHHHHHHhc-cCCCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 011296 276 SFELLILMSG-LLPNPQLETSVLSVCLNTIQT-LYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVS 353 (489)
Q Consensus 276 ~~~~~~~~~~-~~~~~~~~~a~~~~~~~i~~~-~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (489)
....++.+++ .+++ + ++|.|+++.++.+. ...+..+++++..|.+++. +|.++.++..++..++...++.+.+
T Consensus 234 ~~~~~~~~l~~~~g~-~-~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYSW-D-EVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCCH-H-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998886 6653 3 78999999999874 5889999999999999995 6789999999999999999999999
Q ss_pred HHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhHhHHHHHHhhc
Q 011296 354 ATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWL 433 (489)
Q Consensus 354 ~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~~ 433 (489)
++++++++++..++.+|+ ++.+.+++++++.+.++...+......+.+.++++.....++.. .++++++.+++...
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~- 384 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPL- 384 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-
Confidence 999999999999998875 45567899999999999888888887777888888888777775 78899999998654
Q ss_pred CCCcchhhHHHHHhHHHHHHHHHHHHh
Q 011296 434 KFRGRGLWIGIQAGAFTQTLLLGIITT 460 (489)
Q Consensus 434 ~~g~~g~~~a~~~~~~~~~~~~~~~~~ 460 (489)
+|..|+++++.+++.+...+......
T Consensus 385 -~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 385 -HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988776555
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=5.1e-29 Score=246.11 Aligned_cols=386 Identities=13% Similarity=0.111 Sum_probs=334.6
Q ss_pred cCh-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhCCcccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Q 011296 66 LGQ-LALSSTAMAISLASVTGFSVL-LGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLV 142 (489)
Q Consensus 66 ~g~-~~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 142 (489)
+|. ++..++..+.++..++...+. .+++++..|..++.. ++++++.++..+....+..+.+++++++ +++++++.+
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454 456789999999998744454 468999999999999 8889999999999988888888887777 888999998
Q ss_pred Hc--CCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhhhhhhhHhhcccCCC---cchhH
Q 011296 143 LI--GQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLG---NLGGA 217 (489)
Q Consensus 143 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g---~~g~a 217 (489)
.+ +.+++..+.+.+++++..+..++..+..++.+++|+++|...+....+..++.-++...++. ...| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHH
Confidence 87 55678889999999999999999999999999999999999999988888877665444443 3356 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCCChHhHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCchhhhHHH
Q 011296 218 LAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVL 297 (489)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 297 (489)
+|..++.++..++.+...+|.....+...+.+. +..|++++...|..+.....++...++..+.+.++++ +++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l 236 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRD---PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG--SVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHH
Confidence 999999999999988888876543222222222 3589999999999999999999999999999988754 67999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccC----CcHH
Q 011296 298 SVCLNTIQTLY-AIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFS----NEKQ 372 (489)
Q Consensus 298 ~~~~~i~~~~~-~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~d~~ 372 (489)
+.+.++.+++. .+..+++++..|.++++..+||.++.++..++.++....+++|+++++..++++++++.. .|.|
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 99999999977 556699999999999999999999999999999999999999999999999999997773 4777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhHhHHHHHHhhcCCCcchhhHHHHHhHHHHH
Q 011296 373 VVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQT 452 (489)
Q Consensus 373 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~ 452 (489)
..+.....+.+++++.++.+++.++...+++.+|+|.++..++++ .++++.+.+.+.. .+|..|+++++.++..+..
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~ 393 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLVP--FFGVAGLALATSLSAIISA 393 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999997 7899999988755 5999999999999999999
Q ss_pred HHHHHHHhhc
Q 011296 453 LLLGIITTCT 462 (489)
Q Consensus 453 ~~~~~~~~~~ 462 (489)
++.++.++|+
T Consensus 394 ~~l~~~l~r~ 403 (451)
T PF03023_consen 394 LLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHH
Confidence 9988888765
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=2.5e-28 Score=236.43 Aligned_cols=420 Identities=14% Similarity=0.056 Sum_probs=353.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-Ch-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhCCcccch
Q 011296 35 VKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQ-LALSSTAMAISLASVTGFSVLLG-MASALETLCGQAYGAQQYQR 111 (489)
Q Consensus 35 ~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~-g~-~~~~~~~~~~~~~~~~~~~~~~g-l~~~~~~~~s~~~g~~~~~~ 111 (489)
.+.+++.+.-....++++.+.+++...+++.+ |. ..-.++.++..+.+++--.+..| ++++..|...++..++++++
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 34566667788888889999999999999996 87 56679999999999875666555 68999999999998887888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc-CC--ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHH
Q 011296 112 IGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLI-GQ--DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPM 187 (489)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 187 (489)
.++..+........+.+..+++ .++++++...+ +. +++....+....++..+..++.++.....+.+++.++...+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 8888888876777777777776 66677777454 32 23333367788899999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHhHhcHHHHHHHHhhHH
Q 011296 188 FLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSA 267 (489)
Q Consensus 188 ~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~ 267 (489)
.++.+..++.-+.....+....+....+.++|+.++-+++.++.+..++|.+...+..++++. +.+|++.+...|..
T Consensus 166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~---~~lk~~~~~~~p~~ 242 (518)
T COG0728 166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKD---PGLKRFLKLMLPAL 242 (518)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCc---hhHHHHHHHHHHHH
Confidence 998888887766455544543333467889999999999999999999887643333333322 47899999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHH
Q 011296 268 VMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLY-AIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAV 346 (489)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 346 (489)
+.....+++..+++.+.+.+.++ +++.++.+.++++++. .+..+++++..|.+|++..++|.++.++..+.++++++
T Consensus 243 l~~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~l 320 (518)
T COG0728 243 LGVSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTL 320 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 99999999999999999998654 6689999999999987 77889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchhhhhccc----CCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhh
Q 011296 347 TETIVVSATLFASRRVFGYVF----SNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCG 422 (489)
Q Consensus 347 ~~~~~~~~~~~~~~~~i~~l~----~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~ 422 (489)
++++|.++++.+++++++++. ..+++........+..++++.++..+..++...+++.+|+|.|+.+++++ .+++
T Consensus 321 ll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n 399 (518)
T COG0728 321 LLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVN 399 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHH
Confidence 999999999999999999777 24567788889999999999999999999999999999999999999998 7899
Q ss_pred HhHHHHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHhhc
Q 011296 423 IPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 462 (489)
Q Consensus 423 i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 462 (489)
+.+++.+. +.+|..|+++++.++.++...++++..+|+
T Consensus 400 ~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 400 ILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99996664 458899999999999988888888877765
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.97 E-value=3.3e-26 Score=231.34 Aligned_cols=398 Identities=12% Similarity=0.072 Sum_probs=315.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchHH
Q 011296 35 VKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIG 113 (489)
Q Consensus 35 ~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~ 113 (489)
-|+..+.+.+..++++...+.+++...+++|+ |++++|.++.+..+..+.......|++++.. |. +|.+ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccCC--H
Confidence 46788889999999999999999999999996 9999999999999999875677778887653 21 1211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 011296 114 TQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSC 192 (489)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 192 (489)
+..++.+.+....+++..++ +.+++++...++ +++. ...+++..+..++..+.....+.++...+.+.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 34455666666677666665 445555554444 4432 24567777778888888888999999999998888888
Q ss_pred HHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHhHhcHHHHHHHHhhHHHHHHH
Q 011296 193 AALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICL 272 (489)
Q Consensus 193 ~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~~~~~~ 272 (489)
...+...+..+.+.. .+.|+.+.++++.+++.+..+......+++.+ ...++ +++..|++++++.|...++..
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~---~~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKIYR---PALHF---SLASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcccCC---cccee---cHHHHHHHHhhhHHHHHHHHH
Confidence 887777766665554 46899999999999988877654433322211 11112 235679999999999999999
Q ss_pred HHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011296 273 EWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYA-IPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIV 351 (489)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~-~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 351 (489)
..+..+.|.++++.+.+.+ +++.|+.+.++.+.+.. +...++++..|.+++. ++|.++.++.+++..++...+++|
T Consensus 223 ~~~~~~~d~~~lg~~lg~~-~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRILGAE-VLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhhchH-hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887665 78999999999987654 4556888999999886 578899999999999999999999
Q ss_pred HHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhHhHHHHHHh
Q 011296 352 VSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGF 431 (489)
Q Consensus 352 ~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~ 431 (489)
+.+++..+++++..++.+|+ ++.+...++++++..++..+..+....+++.||+|..+..+++. .++.+|..+.+..
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~~ 376 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGGQ 376 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHHh
Confidence 99999999999998887654 66788999999999999999999999999999999999999886 6778888777654
Q ss_pred hcCCCcchhhHHHHHhHHHHHHHHHHHHhh
Q 011296 432 WLKFRGRGLWIGIQAGAFTQTLLLGIITTC 461 (489)
Q Consensus 432 ~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 461 (489)
.+|..|+++++.+++.+......+..+|
T Consensus 377 --~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 377 --LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred --hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999988887776633
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.95 E-value=4.6e-24 Score=215.22 Aligned_cols=391 Identities=15% Similarity=0.150 Sum_probs=309.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccch
Q 011296 33 GEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (489)
Q Consensus 33 ~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 111 (489)
...+++.+.+.....+++.+.+.+++-...++|+ |++++|.++.+.++.+++......|+..+.++.++++.+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 4567889999999999999999999999999995 999999999999999988677779999999999999876555555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHHH
Q 011296 112 IGTQ-TYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLS 190 (489)
Q Consensus 112 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (489)
.... ...........+.+.........+. + +.....+++..+..+.........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------D----PVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------C----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4444 4444444444433333333222222 1 223345678889999999999999999999999998887
Q ss_pred HHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhccc-cccccCCCChHhHhcHHHHHHHHhhHHHH
Q 011296 191 SCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTA-CAESRVPISMELFQGIGEFFHFAIPSAVM 269 (489)
Q Consensus 191 ~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~l~~~~~p~~~~ 269 (489)
.+.. ..-+.....+.. .......++...+..........+..++++ ..+... +..++..|++++.++|....
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~p~~~~ 225 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPIL---RFSLALLKELLRFGLPLLLS 225 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc---CchhHHHHHHHHHhhHHHHH
Confidence 4444 121222222221 345566777777777766666665542222 111111 11346789999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHH
Q 011296 270 ICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTET 349 (489)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 349 (489)
+....+..+.|.++++.+.+++ .+|.|+.+.++......+..+++.+..|.+++.+.++|.++.++..+++.++...++
T Consensus 226 ~~~~~l~~~~D~~~i~~~l~~~-~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (480)
T COG2244 226 SLLNFLFTNIDTLLLGLFLGPA-QVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLIS 304 (480)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-HheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887655 779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhHhHHHHH
Q 011296 350 IVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAIL 429 (489)
Q Consensus 350 ~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l 429 (489)
.|..+++..+++++..++.+++ +..+...+.+++++.++.++.......+++.|+++..+..+.++ .++++.+.+++
T Consensus 305 ~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~l 381 (480)
T COG2244 305 IPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLL 381 (480)
T ss_pred HHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHH
Confidence 9999999999999998887665 33377899999999999999999999999999999999999998 67888888888
Q ss_pred HhhcCCCcchhhHHHHH
Q 011296 430 GFWLKFRGRGLWIGIQA 446 (489)
Q Consensus 430 ~~~~~~g~~g~~~a~~~ 446 (489)
.. .+|..|+..++..
T Consensus 382 i~--~~g~~g~~~a~~~ 396 (480)
T COG2244 382 IP--RFGLIGAAIATAS 396 (480)
T ss_pred HH--hhhhhhHHHHHHH
Confidence 54 4888999988833
No 16
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.90 E-value=1.2e-21 Score=193.61 Aligned_cols=206 Identities=12% Similarity=0.064 Sum_probs=192.3
Q ss_pred hcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHH
Q 011296 254 QGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQK 333 (489)
Q Consensus 254 ~~~k~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~ 333 (489)
+..|+++++++|.+++++.......+|+.+++++++++ ++|+.+++.++.++...+..+++.+..+.++|++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~-alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPV-YLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 45789999999999999999999999999999986543 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHH
Q 011296 334 ARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFV 413 (489)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 413 (489)
+++..++++.++++++++..++...+.+++..+++.|+|+.+.+.+|+++..++.++..+..++.+.+++.||+|.++..
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHhHHHHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHhh
Q 011296 414 NLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 461 (489)
Q Consensus 414 ~~~~~~i~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 461 (489)
++++ .++++++.+++.+.+++|+.|+++|+.+++.+..++..+++++
T Consensus 165 ~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 7899999999988888999999999999999988877666554
No 17
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.90 E-value=2e-21 Score=193.87 Aligned_cols=206 Identities=16% Similarity=0.068 Sum_probs=187.9
Q ss_pred HhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChH
Q 011296 253 FQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQ 332 (489)
Q Consensus 253 ~~~~k~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~ 332 (489)
++.+|++++.++|.+++++.+.+....|..+++++++. ++++++++.++..+...+..+++++..|.++|++|+||++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~--alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPE--ALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 35789999999999999999999999999999998754 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHH
Q 011296 333 KARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAF 412 (489)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 412 (489)
++++..+.++.+...++++..++++ +.+++..+|+.|+|+.+.+.+|+++..++.++..+.....+++++.||++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999998877765 568899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhHHHHHHhh----cCCCcchhhHHHHHhHHHHHHHHHHHHhhc
Q 011296 413 VNLGAFYLCGIPTAAILGFW----LKFRGRGLWIGIQAGAFTQTLLLGIITTCT 462 (489)
Q Consensus 413 ~~~~~~~i~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 462 (489)
.++++ .+++++++|++.+. +++|+.|+++|+.+++....+.+.++++++
T Consensus 163 ~~~~~-~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 163 ISLAG-AVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHH-HHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 99997 78899999987653 358999999999999888777666655543
No 18
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.90 E-value=2.9e-21 Score=190.91 Aligned_cols=207 Identities=19% Similarity=0.195 Sum_probs=197.7
Q ss_pred hcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHH
Q 011296 254 QGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQK 333 (489)
Q Consensus 254 ~~~k~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~ 333 (489)
+..|+++++++|.+++++.+.....+|++++++++. .++++-++++++..+...+..+++.+..+.++|++|+||+++
T Consensus 14 ~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~--~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 14 KILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGA--EALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 467999999999999999999999999999999983 377999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHH
Q 011296 334 ARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFV 413 (489)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 413 (489)
+++..++++..+++++++..++...+++++..++..++|+.+.+.+|+++..++.++..++.++.+++++.||+|.+++.
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~ 171 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI 171 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHhHHHHHHhh-cC-CCcchhhHHHHHhHHHHHHHHHHHHhhcC
Q 011296 414 NLGAFYLCGIPTAAILGFW-LK-FRGRGLWIGIQAGAFTQTLLLGIITTCTN 463 (489)
Q Consensus 414 ~~~~~~i~~i~~~~~l~~~-~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 463 (489)
++++ .++|+.+.|++.+. ++ +|+.|+++|+.+++.+..++..+++++++
T Consensus 172 ~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 172 LLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9998 79999999999888 46 99999999999999999999988888765
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=1.5e-21 Score=194.72 Aligned_cols=204 Identities=14% Similarity=0.100 Sum_probs=190.1
Q ss_pred hcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHH
Q 011296 254 QGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQK 333 (489)
Q Consensus 254 ~~~k~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~ 333 (489)
+..|+++++++|.+++++.......+|+.+++++++. ++|+++++.++..+...+..+++++..+.++|++|+||+|+
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~--alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKE--AMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4589999999999999999999999999999998754 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccC--CcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhH
Q 011296 334 ARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFS--NEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAA 411 (489)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 411 (489)
+++..+.++.+++.++++.+++.+.+++++..+|. .|+|+.+.+..|+++..++.++..+..+..+++++.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHhHHHHHHhh----cCCCcchhhHHHHHhHHHHHHHHHHHHh
Q 011296 412 FVNLGAFYLCGIPTAAILGFW----LKFRGRGLWIGIQAGAFTQTLLLGIITT 460 (489)
Q Consensus 412 ~~~~~~~~i~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 460 (489)
..++++ +++++++.+++.+. +++|+.|+|+|+.+++.+..++..+++.
T Consensus 184 ~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 184 LINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999996 78999999988764 4789999999999999998887665554
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.89 E-value=5.9e-21 Score=190.12 Aligned_cols=207 Identities=14% Similarity=0.111 Sum_probs=193.2
Q ss_pred hcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHH
Q 011296 254 QGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQK 333 (489)
Q Consensus 254 ~~~k~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~ 333 (489)
+..|++++.++|.+++++...+....|+.+++++.+++ ++++++++.++..+...+..+++.+..+.++|++|+||+|+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~-~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAE-GLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 46799999999999999999999999999999973333 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHH
Q 011296 334 ARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFV 413 (489)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 413 (489)
+++..+.++.++++++++++++...+++++..+++.|+|+.+.+.+|+++..++.++..+.....+.+++.||++.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHhHHHHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHhhc
Q 011296 414 NLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 462 (489)
Q Consensus 414 ~~~~~~i~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 462 (489)
++.+ .++++++.+++.+.+++|..|+++|+.+++.+..++..++++++
T Consensus 168 ~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 168 MVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9998 68999999999888889999999999999999988877666543
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.88 E-value=2.6e-20 Score=186.32 Aligned_cols=207 Identities=14% Similarity=0.120 Sum_probs=191.3
Q ss_pred HhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChH
Q 011296 253 FQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQ 332 (489)
Q Consensus 253 ~~~~k~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~ 332 (489)
++.+|+++++++|.+++++........|..+++++++. ++++++++.++..+...+..+++.+..|.+++++|+||++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~--~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSAT--DLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 45789999999999999999999999999999998754 6789999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHH
Q 011296 333 KARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAF 412 (489)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 412 (489)
++++..+.++.+++.+++++++++.++++++..++..|+|+.+.+.+++++..++.++..+.....+.+++.||++.++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhHHHHHHhh----cCCCcchhhHHHHHhHHHHHHHHHHHHhhc
Q 011296 413 VNLGAFYLCGIPTAAILGFW----LKFRGRGLWIGIQAGAFTQTLLLGIITTCT 462 (489)
Q Consensus 413 ~~~~~~~i~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 462 (489)
.++++ .++++++.+++.+. +++|..|+++++.+++.+..++..++.+++
T Consensus 166 ~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 166 IGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99998 68899999888643 468999999999999999998887776654
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.82 E-value=1.2e-17 Score=169.78 Aligned_cols=206 Identities=14% Similarity=0.135 Sum_probs=186.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccc
Q 011296 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (489)
Q Consensus 31 ~~~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 110 (489)
.++..|++++.+.|..+++....+...+|+.+.+++|++++++|+.+.++..+....+..+++++..|.+|++.|+||++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 35688999999999999999999999999988666799999999999999987634467899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChh
Q 011296 111 RIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQ----DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLII 185 (489)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 185 (489)
+.++..+++..+...++++.+++ ..+++++..++.+ ++|....+..++++.+++.++.++...+.+.+++.||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 99999999999999999998887 7889999988755 456778889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 011296 186 PMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 238 (489)
Q Consensus 186 ~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~ 238 (489)
.+.+.++...++|++++++++. .+|..|+++|+.+++.+..++..++.+|+
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999874 48999999999999999999887777654
No 23
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.78 E-value=8.5e-17 Score=155.08 Aligned_cols=194 Identities=19% Similarity=0.163 Sum_probs=178.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 011296 265 PSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFM 344 (489)
Q Consensus 265 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~ 344 (489)
|.++++....+....+..++++++++ ++++++++.++..+...+..+++++..|.+++++|+||+|++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPV--DLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 77888899999999999999998743 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhHh
Q 011296 345 AVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIP 424 (489)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~ 424 (489)
...++++.+++++++++++..+++.|++..+.+..++++++++.++.+++....+.+++.||++.++..++++ .+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999987888899999999999999999999999999999999999999999997 678889
Q ss_pred HHHHHHh-hcC-CCcchhhHHHHHhHHHHHHHHHHHHhh
Q 011296 425 TAAILGF-WLK-FRGRGLWIGIQAGAFTQTLLLGIITTC 461 (489)
Q Consensus 425 ~~~~l~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~ 461 (489)
..+.+.+ .++ +|..|+++++.+++.+..++..++.++
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888876 556 779999999999999988887766664
No 24
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.78 E-value=9.5e-19 Score=149.30 Aligned_cols=162 Identities=22% Similarity=0.410 Sum_probs=156.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Q 011296 265 PSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFM 344 (489)
Q Consensus 265 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~ 344 (489)
|.+++++.+......+..+++++++. ++++++++.++.++...+..+++++..+.++|++|+||++++++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~--~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPE--ALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTC--CCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 88999999999999999999999654 6799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhHh
Q 011296 345 AVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIP 424 (489)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~ 424 (489)
+..+++++++++..+++++..+|+.|+|+.+.+..++++..++.++..+.....+++++.||++.++..++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 011296 425 TAAI 428 (489)
Q Consensus 425 ~~~~ 428 (489)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9885
No 25
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.76 E-value=2.5e-15 Score=139.87 Aligned_cols=271 Identities=14% Similarity=0.179 Sum_probs=207.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchHHHHHH
Q 011296 39 GYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTY 117 (489)
Q Consensus 39 ~~~~~p~~~~~~~~~~~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 117 (489)
.|.+.....+++...+.+++-..+++|+ |++++|.++...++.++.......|++++..+.+++...+ +++.+....
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 5678889999999999999999999996 9999999999999999875666899999999999987533 344455555
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhh
Q 011296 118 TAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCL 197 (489)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ 197 (489)
.......+.+++......... ..+.++. . ..+........++.........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~----~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS----FFGNPSL-S---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HcCCchH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444333333322212 3333321 1 1122222222257788888999999999999999999999888
Q ss_pred hhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHhHhcHHHHHHHHhhHHHHHHHHHHHH
Q 011296 198 HIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSF 277 (489)
Q Consensus 198 ~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~~~~~~~~~~~ 277 (489)
..+...++... +.+..+..++..++..+...+...+.+|+.+ .+.++.+++..|++++.+.|..+++....+..
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYS 225 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776666653 3458899999999999998888888776543 22222224678999999999999999999999
Q ss_pred HHHHHHhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011296 278 ELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNEL 326 (489)
Q Consensus 278 ~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~ 326 (489)
..|.++++.+.+.+ ++|.|+++.++......+..++.++..|.+++.+
T Consensus 226 ~~d~~ii~~~~g~~-~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 226 QIDRLIIGYFLGPE-AVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HhHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999998776 7899999999999999999999999999999863
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.75 E-value=1.6e-15 Score=150.31 Aligned_cols=207 Identities=16% Similarity=0.123 Sum_probs=191.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccch
Q 011296 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQR 111 (489)
Q Consensus 32 ~~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 111 (489)
++..|++++...|..++.....+...+|+.+.+.+++.++++++.+.++.++....+..++++...|.+|+...+||.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 56799999999999999999999999999999999999999999999999998677888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhH
Q 011296 112 IGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIG----QDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIP 186 (489)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (489)
.++.+++.+...+.+.++.++. ..+++|++..+. .+.|..+.....+++..++.|+.++...+.+.+.+.+++|.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 9999999999999999999887 888999998763 34555677889999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhccc
Q 011296 187 MFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTA 240 (489)
Q Consensus 187 ~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~ 240 (489)
+...++.+.++|++++.++.. .+|..|.++|+.++..+..+..+..++|+..
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999988884 5899999999999999999999888876643
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.73 E-value=3.2e-18 Score=146.08 Aligned_cols=160 Identities=23% Similarity=0.387 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchHHHHHHHHHHHH
Q 011296 44 PMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCL 123 (489)
Q Consensus 44 p~~~~~~~~~~~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 123 (489)
|.++++++..+...+|+.+++++|++++++++++.++..+. ..+..|++.|..+.+||++|++|++++++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999997 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHh-hhhhhh
Q 011296 124 FLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAAL-CLHIPI 201 (489)
Q Consensus 124 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~~ 201 (489)
..++++..++ ..+.+++..+++.|+|+.+.+..|+++..++.++........+++++.|+++...+.++... ++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999988 88899999999999999999999999999999999999999999999999999999999999 999998
Q ss_pred hhH
Q 011296 202 CWS 204 (489)
Q Consensus 202 ~~~ 204 (489)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.73 E-value=1.3e-15 Score=154.20 Aligned_cols=204 Identities=16% Similarity=0.136 Sum_probs=175.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-Ch------H---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 011296 30 VLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQ------L---ALSST-AMAISLASVTGFSVLLGMASALET 98 (489)
Q Consensus 30 ~~~~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~-g~------~---~~~~~-~~~~~~~~~~~~~~~~gl~~~~~~ 98 (489)
..++.+|++++.++|.+++++...+...+|+.+++++ ++ + .+|.+ +.+.++..+. ..+..+++.+..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999874 22 2 22333 3555666766 6778899999999
Q ss_pred HHHhhhCCcccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 011296 99 LCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRY 177 (489)
Q Consensus 99 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~ 177 (489)
.++++.|+||+++.++..++...+....+++.++. ..++++++.++..++ .+.+++++.++..++........+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988876 788899988876543 3567899999999999999999999
Q ss_pred HhhcCChhHHHHHHHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 011296 178 FQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 238 (489)
Q Consensus 178 l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~ 238 (489)
+++.||++...+.++...++|++++++++..+.+|+.|+++++.+++.+..++..+..+|.
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988755678999999999999999999888777653
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.72 E-value=5.1e-14 Score=137.38 Aligned_cols=214 Identities=14% Similarity=0.115 Sum_probs=193.1
Q ss_pred ccccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011296 25 STTWGVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAY 104 (489)
Q Consensus 25 ~~~~~~~~~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~ 104 (489)
++++....+..|++.+...|..++...+++..++|+.+-+.+.+.+.+.+.++.++.++..-.+..++++...|.+||..
T Consensus 221 ~p~~~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~ 300 (518)
T COG0728 221 KPRFGFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHA 300 (518)
T ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34454445799999999999999999999999999999999999999999999999999977899999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 011296 105 GAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIG----QDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQ 179 (489)
Q Consensus 105 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~ 179 (489)
.++|.++.++..+.++.+..+.+++.++. ..+++|+...+. .+++....+.+.+....++.+++.+..++...+.
T Consensus 301 ~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FY 380 (518)
T COG0728 301 ANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFY 380 (518)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 888999998763 2344456677889999999999999999999999
Q ss_pred hcCChhHHHHHHHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhccc
Q 011296 180 SQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTA 240 (489)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~ 240 (489)
+++++|.|+.+.+++.++|+.+++.+. +.+|..|.+.++.++.++++.+.++.++|+..
T Consensus 381 Ar~d~ktP~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~ 439 (518)
T COG0728 381 AREDTKTPMKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLV 439 (518)
T ss_pred HccCCCcChHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999997777 45888899999999999999998888877653
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.70 E-value=6.5e-14 Score=141.79 Aligned_cols=200 Identities=15% Similarity=0.111 Sum_probs=173.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccc
Q 011296 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQ 110 (489)
Q Consensus 32 ~~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 110 (489)
++..|++++++.|...+++...+...+|+.+++++ |++++|.|+.+.++..+....+...++....|.+++. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 56789999999999999999999999999999996 9999999999999988764555556778888999886 56788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHH
Q 011296 111 RIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (489)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (489)
+.++.+++...+...++++..+. ...++|++..+.+++ +..+...++++++...+..........+++.|+.|....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 89999999999999999998886 788999988876654 567788999999999999999999999999999999998
Q ss_pred HHHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 011296 190 SSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKF 237 (489)
Q Consensus 190 ~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~ 237 (489)
.++...+++++..+++. ..+|+.|+++++.+++.+......++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89988888887766666 34799999999999999988888777744
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.67 E-value=1.6e-14 Score=142.81 Aligned_cols=203 Identities=11% Similarity=0.046 Sum_probs=172.4
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCc
Q 011296 29 GVLSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVG-HLGQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQ 107 (489)
Q Consensus 29 ~~~~~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~ 107 (489)
+.+++.+|++++++.|..+++....+...+|+.+++ ++|++++|.|+.+.++.......+..+++++..|.+++. +
T Consensus 208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 334678999999999999999999999999999997 579999999999999977433778899999999999995 5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhH
Q 011296 108 QYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIP 186 (489)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (489)
|+++.++..++........+.+.+++ .+++++++.++.+++ ++.+.+++++++++.++...+..+...+-..++.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888999998888888887776 788999999887765 344677888888888887777766666667778888
Q ss_pred HHHHHHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 011296 187 MFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFS 238 (489)
Q Consensus 187 ~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~ 238 (489)
.....+...+++++++++++. .+|..|+++++.+++.+..++..+...++
T Consensus 363 ~~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~~~ 412 (416)
T PRK15099 363 YILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFLLY 412 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999884 48999999999999999999887666543
No 32
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.58 E-value=6.9e-13 Score=133.98 Aligned_cols=197 Identities=16% Similarity=0.209 Sum_probs=174.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccc
Q 011296 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY 109 (489)
Q Consensus 31 ~~~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 109 (489)
.++..|++++.++|...+.+...+.+.+|+.+++++ |++++|.|+.+.++.... ..+...++....|.+++...++|.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 478999999999999999999999999999999996 999999999888888876 888999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHH
Q 011296 110 QRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMF 188 (489)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (489)
++.++..++...+....+++..++ ..+++|+...+.+++. ..+...++++++..++..+.......+++.|+.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999887 8889899988766653 2367788999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHH
Q 011296 189 LSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIY 234 (489)
Q Consensus 189 ~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~ 234 (489)
..+..+.++|++++++++ +.+|..|++.++ .+ .........+
T Consensus 365 ~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~-~~~~~~~~~~ 406 (480)
T COG2244 365 LISLISALLNLILNLLLI--PRFGLIGAAIAT-AS-VIALALLLFY 406 (480)
T ss_pred HHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HH-HHHHHHHHHH
Confidence 999999999999999999 558999999999 44 3333333333
No 33
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.57 E-value=6.8e-12 Score=115.22 Aligned_cols=247 Identities=17% Similarity=0.224 Sum_probs=176.0
Q ss_pred HHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchHHHHHHHHHHHHHHHHHHHHH
Q 011296 54 LLQVVSMMMVGHL-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSF 132 (489)
Q Consensus 54 ~~~~i~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (489)
+.+++-..+++|+ |++++|.++....+..+.......|+...... . .++++++.++..+.......+.+.+..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777889995 99999999999999998745456777766554 2 2345555666666655444444433333
Q ss_pred HHHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhhhhhhhHhhcccCCC
Q 011296 133 LWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLG 212 (489)
Q Consensus 133 ~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g 212 (489)
+ ...+..++ .+++. ..++....+..++........+.++++++.+......+...+........+.. .+.+
T Consensus 77 ~---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLN 147 (251)
T ss_pred H---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 2 11112223 23322 23455667778888999999999999999999999999888888544444444 3348
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCChHhHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCchh
Q 011296 213 NLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQL 292 (489)
Q Consensus 213 ~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (489)
..+..++..++..+..++.+...+++.+ .+. +.+..| .++.+.|....+...+.....|.++++.+.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~- 217 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRKLR-----LSF---KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPE- 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccC-----CCc---hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-
Confidence 8888899888888888776664432211 111 112224 799999999999999999999999999944544
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 011296 293 ETSVLSVCLNTIQTLY-AIPYGLGAAVSTRVSN 324 (489)
Q Consensus 293 ~~a~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~ 324 (489)
++|.|+++.++..... .+..++++...|.+++
T Consensus 218 ~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 218 AVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7899999999999888 9999999999999986
No 34
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.34 E-value=9.9e-11 Score=115.33 Aligned_cols=206 Identities=13% Similarity=0.072 Sum_probs=186.9
Q ss_pred HhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCCh
Q 011296 253 FQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQT-LYAIPYGLGAAVSTRVSNELGAGNV 331 (489)
Q Consensus 253 ~~~~k~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~-~~~~~~~~~~a~~~~~~~~~g~~~~ 331 (489)
....|++++++.|.++....+.....++..+++++++. ..++.++++...+. .+.+..++..+..|..+|.+|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~l--eLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNL--ELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccch--HHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 46779999999999999999999999999999999876 45888888888776 5677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhH
Q 011296 332 QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAA 411 (489)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 411 (489)
+......+++.......+.|.+.. +.+.+++...+..||++...+..+.++.....+.......+...+|+.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999998888888888754 5555888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHhHHHHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHhhc
Q 011296 412 FVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 462 (489)
Q Consensus 412 ~~~~~~~~i~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 462 (489)
++...+ ..+++++.+++.+..++|..|++++..+++.+...+...+....
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 999997 78999999999999999999999999999999998887776653
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.28 E-value=1.9e-08 Score=100.76 Aligned_cols=420 Identities=11% Similarity=0.020 Sum_probs=239.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhCCcccchHHHHHH
Q 011296 40 YIAAPMVAVTLSQYLLQVVSMMMVGH-LGQLALSSTAMAISLASVT-GFSVLLGMASALETLCGQAYGAQQYQRIGTQTY 117 (489)
Q Consensus 40 ~~~~p~~~~~~~~~~~~~i~~~~i~~-~g~~~~~~~~~~~~~~~~~-~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 117 (489)
+.+.-+++.+++..+.+++-+.++-| ++++.+|..+.=..+..-. .+..=.++-.+..+.-.+...+++.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 44566788888888888877777777 4999998886554444321 133345666665543333211112222323222
Q ss_pred HHHHHHHHHHHHHHHHHH--hHHHH----HHHcCCC-hh---HHHHHHHHHHHHhhHHHHHHHHHH----HHHHHhhcCC
Q 011296 118 TAIFCLFLVCFPLSFLWI--YAGKL----LVLIGQD-PQ---ISHEVGKFMIWLLPALFAYATMQP----LIRYFQSQSL 183 (489)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~--~~~~i----~~~~~~~-~~---~~~~~~~~l~i~~~~~~~~~~~~~----~~~~l~~~~~ 183 (489)
....+..+.+.+.+.+++ ...|+ ..+...+ ++ ..+.....+.+...+...-.+... .+..+.-.-|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 333333333332222211 11111 1111111 11 111122222333333333333333 3333333334
Q ss_pred hhHHHHHHHHHhhhhhhhhhHhhcc-cCCCc-----ch-hHHHHHHHHHHHHHHHHHHHH--hccccccc---cCCCCh-
Q 011296 184 IIPMFLSSCAALCLHIPICWSLVYK-SGLGN-----LG-GALAIGISNWLNVTFLAIYMK--FSTACAES---RVPISM- 250 (489)
Q Consensus 184 ~~~~~~~~i~~~~~~i~~~~~li~~-~~~g~-----~g-~a~a~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~- 250 (489)
.+.-........+++.......... .+++. .+ +.++..+++....+....... ...+.+.. ..+...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 4444444444444444433333211 01111 11 234455555555443322111 11111100 011111
Q ss_pred --HhHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--CCCchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 011296 251 --ELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGL--LPNPQLETSVLSVCLNTIQTLY-AIPYGLGAAVSTRVSNE 325 (489)
Q Consensus 251 --~~~~~~k~l~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~~ 325 (489)
.....-+++++.....+.+...-.+...-|.+++.. +.+.+ +.|.|++++++.++.. .+..++-.+.....++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~-~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFE-DQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHH-HhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 011123788999999999999999999999998888 66655 6799999999998764 55558888888888888
Q ss_pred hcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 011296 326 LGAGNV---------QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGV 396 (489)
Q Consensus 326 ~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 396 (489)
..+++. ++..+.....++....+++.+..+-...++.+..++.++.-....+...++.++...|+.+++.+
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 765433 34556666677777777766666666667777777755432233456799999999999999999
Q ss_pred HhHHhhccCcchhhHHHHHH--HHHHhhHhHHHHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHhh
Q 011296 397 FSGVARGCGWQNIAAFVNLG--AFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 461 (489)
Q Consensus 397 ~~~~l~~~g~~~~~~~~~~~--~~~i~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 461 (489)
...+.++..+.+.....+-. ...++.+..+|++... ++|..|..+|.++.+.++-+.+..+.++
T Consensus 404 ~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 404 TEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887665543322 1234566677777665 7999999999999999999888877764
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=8e-06 Score=76.85 Aligned_cols=416 Identities=12% Similarity=0.006 Sum_probs=218.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhCCcccch
Q 011296 34 EVKKQGYIAAPMVAVTLSQYLLQVVSMMM-VGHLGQLALSSTAMAISLASVT-GFSVLLGMASALETLCGQAYGAQQYQR 111 (489)
Q Consensus 34 ~~k~l~~~~~p~~~~~~~~~~~~~i~~~~-i~~~g~~~~~~~~~~~~~~~~~-~~~~~~gl~~~~~~~~s~~~g~~~~~~ 111 (489)
...+..+.+.-.+..+++..+.++.-+.+ +.+++++.+|..++-..+.+-. .+..=.++.-+..+.-++. +++.++
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~te 83 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWTE 83 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHHH
Confidence 34445555666777777777777755554 4446999999998776665522 0222233444332222221 122234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHH
Q 011296 112 IGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQI--SHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFL 189 (489)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 189 (489)
..+..+.+.-+..+......-+|+. +....+++ .+.-..-+.+...+...--+...+.-..|..-+.+.-..
T Consensus 84 ~~n~~wlS~~L~~~i~~~~i~~wl~------~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i 157 (530)
T KOG2864|consen 84 FINLLWLSVPLQTAINVACIYFWLG------FLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAI 157 (530)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHH------HhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4444444444444444333322221 11111111 111111122222333333333333333333333333333
Q ss_pred HHHHHhhhhhhhhhHh-hccc-CCCcchhHHHHHHHHHHHHHH-HHHHHHhcccc------ccc---cCCCChH-h-Hhc
Q 011296 190 SSCAALCLHIPICWSL-VYKS-GLGNLGGALAIGISNWLNVTF-LAIYMKFSTAC------AES---RVPISME-L-FQG 255 (489)
Q Consensus 190 ~~i~~~~~~i~~~~~l-i~~~-~~g~~g~a~a~~~~~~~~~~~-~~~~~~~~~~~------~~~---~~~~~~~-~-~~~ 255 (489)
..-...++..+..+.. +.++ +.++.--|+|.......-.+. .+.|.+.++.. .+. .++.... + ...
T Consensus 158 ~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ff 237 (530)
T KOG2864|consen 158 AEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFF 237 (530)
T ss_pred HhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccc
Confidence 3444444442222222 2222 233444444444433333331 22233333200 000 0000000 0 001
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC--CCchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCChH
Q 011296 256 IGEFFHFAIPSAVMICLEWWSFELLILMSGLL--PNPQLETSVLSVCLNTIQTLY-AIPYGLGAAVSTRVSNELGAGNVQ 332 (489)
Q Consensus 256 ~k~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~~~g~~~~~ 332 (489)
-++..+.......+.+.-.+...-+..++... .+-. +.|.|.++++..++.. ++..++-.......++...+++.|
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~-~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFG-DQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcc-hhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 24555555555555555555555555555432 1111 3488999999987754 566688888888899988888888
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchh
Q 011296 333 KARVAVYA---VIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNI 409 (489)
Q Consensus 333 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 409 (489)
+.|+.... .++....+++....+-...++.+..++.++.-.-..+...+++++...++.+++.+..++.++.++.+-
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 77766544 444444444444444445566677777654322333557999999999999999999999999887665
Q ss_pred hHHHH---HHHHHHhhHhHHHHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHhh
Q 011296 410 AAFVN---LGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 461 (489)
Q Consensus 410 ~~~~~---~~~~~i~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 461 (489)
.-..+ ++. -++.+..+|++... +|..|..+|.++.+.++-+....++++
T Consensus 397 i~~~n~~mlaf-SviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 397 IDKHNKFMLAF-SVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHhcccchhHH-HHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44322 222 34667788888766 788999999999998887766555543
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.95 E-value=3.5e-06 Score=75.80 Aligned_cols=316 Identities=13% Similarity=0.051 Sum_probs=184.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc-c-Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccc
Q 011296 33 GEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGH-L-GQ-LALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY 109 (489)
Q Consensus 33 ~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~-~-g~-~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 109 (489)
..++++.++-.|+.++.....+...+-+.-++| - .+ +.+|+|+++..+.-++ ..+...+-.....++ ++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cchh
Confidence 467899999999999999999999888888887 4 33 5599999999998876 666666665544443 3333
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-H-HhHHHHH-HHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhH
Q 011296 110 QRIGTQTYTAIFCLFLVCFPLSFL-W-IYAGKLL-VLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIP 186 (489)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 186 (489)
++. +........+.+...+..++ + .....++ ...+.++++.+.++..+.++.+.-++.++....++++--+++...
T Consensus 82 srr-~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRR-KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 322 22222222222222222222 2 2233333 346889999999999999888888888999999988876677776
Q ss_pred HHHHHHHHhhhhhhhhhHhhcccCCCc-chhH---HHHHHHHHHHH-HHHHHHHHhccccccccCCCChHhHhcHHHHHH
Q 011296 187 MFLSSCAALCLHIPICWSLVYKSGLGN-LGGA---LAIGISNWLNV-TFLAIYMKFSTACAESRVPISMELFQGIGEFFH 261 (489)
Q Consensus 187 ~~~~~i~~~~~~i~~~~~li~~~~~g~-~g~a---~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~ 261 (489)
....++...+..+++..+++.. ++.. ..+. .|...+..+-+ .+.+-|+.+-.+......+..+.+...++++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~ 239 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLK 239 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHH
Confidence 6666666666655555455532 1111 1111 22222222221 111222222222222222223334457899999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhcc-CCCch---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChHH----
Q 011296 262 FAIPSAVMICLEWWSFELLILMSGL-LPNPQ---LETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQK---- 333 (489)
Q Consensus 262 ~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~---- 333 (489)
+.+|++.....+..+-.+.+.++++ +++.+ .++++..+.++..-..+....-+ .+..|..-++--+++..+
T Consensus 240 F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~~~~~~~~~~~~~~ 318 (345)
T PF07260_consen 240 FWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDKNNPQNKLRNCGNP 318 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhccCcccccccccCc
Confidence 9999999999999999999999988 44432 23444444444333332222211 233344433322222222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
Q 011296 334 -ARVAVYAVIFMAVTETIVVSATLF 357 (489)
Q Consensus 334 -~~~~~~~~~~~~~~~~~~~~~~~~ 357 (489)
.+..+++....+..+++.++..++
T Consensus 319 v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 319 VTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233666666667777666665543
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.45 E-value=2.6e-05 Score=78.49 Aligned_cols=205 Identities=11% Similarity=0.021 Sum_probs=160.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc--c-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCccc-
Q 011296 34 EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGH--L-GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQY- 109 (489)
Q Consensus 34 ~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~--~-g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~- 109 (489)
.-+++++.+.......++..+.+--|++++.. + ..++.|.|+++..+-++..=.+..-+--+.-.+.++...+++.
T Consensus 251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~ 330 (549)
T PF04506_consen 251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSK 330 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCch
Confidence 34678888999999999999999999999999 6 8999999999999999877777777888888888888765433
Q ss_pred --------chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 011296 110 --------QRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQS 180 (489)
Q Consensus 110 --------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 180 (489)
++..+.+...+.+...+++++..+ ...++.++..++++.=....+...++..+..+|+.+++.+..++.++
T Consensus 331 ~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s 410 (549)
T PF04506_consen 331 KKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFS 410 (549)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 234566777777777777766665 66677777776544322233456788999999999999999999987
Q ss_pred cC---ChhHHHHHHHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhcc
Q 011296 181 QS---LIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFST 239 (489)
Q Consensus 181 ~~---~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~ 239 (489)
.. +.+..........++.+..+++++.. ++|..|..+|+.+...+.....+.+.++.-
T Consensus 411 ~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~ 471 (549)
T PF04506_consen 411 VASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYF 471 (549)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 34444445566667777888888876 799999999999999999999988887654
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.33 E-value=1.3e-05 Score=66.63 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=73.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 011296 158 MIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKF 237 (489)
Q Consensus 158 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~ 237 (489)
+++++++.++.++.......+++.||++.....++.+.++|++++++++ +++|..|+++|+.+++.....+...+.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999999999999999999999999997 56999999999999999999988888876
Q ss_pred cc
Q 011296 238 ST 239 (489)
Q Consensus 238 ~~ 239 (489)
+-
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 54
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.18 E-value=0.00037 Score=64.49 Aligned_cols=187 Identities=16% Similarity=0.158 Sum_probs=111.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhccCCCchhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCChHHHHHHHH
Q 011296 261 HFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAI-PYGLGAAVSTRVSNELGAGNVQKARVAVY 339 (489)
Q Consensus 261 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~-~~~~~~a~~~~~~~~~g~~~~~~~~~~~~ 339 (489)
|.+......+............++.+..+++ +.|.|+....+..+...+ ..|++++..-..++...+ .+..++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~-~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLGPE-EYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 3444444555555444444444444444444 668899999999888776 559999998888876543 233333433
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHH
Q 011296 340 AVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFY 419 (489)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 419 (489)
..........+.......... . .++++... .+........++..........+++.++.+.....++.. .
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~-----~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 149 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS-----F-FGNPSLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIIS-S 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----H-cCCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 333333333222222222222 3 33333222 122222222257888888999999999999999888887 4
Q ss_pred HhhHhHHHHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHhh
Q 011296 420 LCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 461 (489)
Q Consensus 420 i~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 461 (489)
++.+.....+... ..+..+..++..++..+..++..+..+|
T Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555443 2347888889999888887777776664
No 41
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.00019 Score=67.83 Aligned_cols=203 Identities=9% Similarity=0.001 Sum_probs=142.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcccchH
Q 011296 36 KKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL---GQLALSSTAMAISLASVTGFSVLLGMASALETLCGQAYGAQQYQRI 112 (489)
Q Consensus 36 k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~---g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 112 (489)
++..+......-..++..+.+=-|.++++.+ +-++.|.|.+..++-++..-.+..-+--..-.+.+|...++++|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 4455556666677778888888899999864 6678888988877777666666667777777888888777766655
Q ss_pred HH---HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChh---
Q 011296 113 GT---QTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLII--- 185 (489)
Q Consensus 113 ~~---~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~--- 185 (489)
++ ++...+.+...+++++... ...+++.+.+.+++.=....+...+++.+..+|+.+++.+..++..+....+
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 54 5555666666666555554 5566777776665432222344678999999999999999999888643222
Q ss_pred HHHHHHHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhccc
Q 011296 186 PMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTA 240 (489)
Q Consensus 186 ~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~ 240 (489)
..-....+..+..++.+++++-. +|..|..+|.++...+.-+..+.+.++..+
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~yr 451 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYYR 451 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11222344555566778888865 777999999999888888888777765543
No 42
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.00 E-value=5.6e-05 Score=62.79 Aligned_cols=79 Identities=15% Similarity=0.128 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhHhHHHHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHh
Q 011296 381 APLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITT 460 (489)
Q Consensus 381 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 460 (489)
+++++++.++..+.....+.+++.||+|..+..++++ .++++++.+.+ .+++|..|+++++.+++.+...+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999998 78999999999 45699999999999999999998888877
Q ss_pred hc
Q 011296 461 CT 462 (489)
Q Consensus 461 ~~ 462 (489)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 64
No 43
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.86 E-value=0.0093 Score=54.32 Aligned_cols=158 Identities=9% Similarity=0.023 Sum_probs=110.6
Q ss_pred hcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChH
Q 011296 254 QGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQ-LETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQ 332 (489)
Q Consensus 254 ~~~k~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~ 332 (489)
....++.++-+|+++++....++-++.+.-+++-.+++ ...|+|+++..+.-++..+...+-+....++.+. ++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s~---rs-- 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNSK---RS-- 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcch---hh--
Confidence 35678999999999999999888888888777643433 3579999999999999999998888877776542 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhchhh-hhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhh
Q 011296 333 KARVAVYAVIFMAVTETIVVSAT-LFASRRV-FGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIA 410 (489)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 410 (489)
+ ++........+........++ .-.+.+. +..++.-||++.+.+...+.++..-.+++++.....+++-=.+++...
T Consensus 83 r-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 R-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 1 112222111111111111111 1123333 446778899999999999999999999999999999988755666666
Q ss_pred HHHHHHH
Q 011296 411 AFVNLGA 417 (489)
Q Consensus 411 ~~~~~~~ 417 (489)
...++..
T Consensus 162 ~~aSI~~ 168 (345)
T PF07260_consen 162 GSASIAD 168 (345)
T ss_pred ehHHHHH
Confidence 6666654
No 44
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.76 E-value=0.0064 Score=55.41 Aligned_cols=162 Identities=12% Similarity=0.211 Sum_probs=102.9
Q ss_pred HHhccCCCchhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 011296 282 LMSGLLPNPQLETSVLSVCLNTIQTLYAIP-YGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASR 360 (489)
Q Consensus 282 ~~~~~~~~~~~~~a~~~~~~~i~~~~~~~~-~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (489)
.++.+..+.+ +.|.|+....+..+...+. .|+.+...- ..++|.++.++..+..........+...++.....
T Consensus 9 ~~lar~l~~~-~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T PF13440_consen 9 ILLARYLGPE-DFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAILIA 82 (251)
T ss_pred HHHHHHCCHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 5688999988888877764 355554433 23466777777766666555554444433322222
Q ss_pred hhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhHhHHHHHHhhcCCCcchh
Q 011296 361 RVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGL 440 (489)
Q Consensus 361 ~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~g~ 440 (489)
. .+ ++++. ..++.......++..+.....+.+++.+|.+......+.. .+..+.....+... +.+..+.
T Consensus 83 ~----~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~ 151 (251)
T PF13440_consen 83 Y----FF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVR-SLLRLLLLVLLLYL-GLNLWSI 151 (251)
T ss_pred H----Hh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHHHHHHHHH-HhhHHHH
Confidence 2 33 33332 2356667778888899999999999999999999988887 34443333333332 3378888
Q ss_pred hHHHHHhHHHHHHHHHHHHh
Q 011296 441 WIGIQAGAFTQTLLLGIITT 460 (489)
Q Consensus 441 ~~a~~~~~~~~~~~~~~~~~ 460 (489)
.++..++..+..+......+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 152 LLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 88888888877766555443
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.30 E-value=0.15 Score=47.64 Aligned_cols=318 Identities=10% Similarity=0.042 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHHHHHhhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHhhHH
Q 011296 86 FSVLLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPAL 165 (489)
Q Consensus 86 ~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~ 165 (489)
..+..|+....++++|...=++|.+++.........+....+..+..+.. ...++... .|=...+..+
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf-------~~~~~~si-----~yk~l~~~~F 141 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF-------FVNNQYSI-----VYKILACALF 141 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh-------hhcCchhH-----HHHHHHHHHH
Confidence 55678899999999999888888888877666665555544444432211 11112111 1111223334
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhhhhhhhHhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 011296 166 FAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESR 245 (489)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~~g~~g~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (489)
...+..=+....+.+.++.+....+-.++.++.+.+..++-. .+..|..++..++..+.......+..|.-+-++ .
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~-~ 217 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSR-R 217 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc-c
Confidence 444455555566678889999998888898888877766664 589999999999999988888777765433211 1
Q ss_pred CCCChHh-HhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCchhh------hHHHHHHHHHHHHHHHHHH-----H
Q 011296 246 VPISMEL-FQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLE------TSVLSVCLNTIQTLYAIPY-----G 313 (489)
Q Consensus 246 ~~~~~~~-~~~~k~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~i~~~~~~~~~-----~ 313 (489)
..++..+ .+....+ .+-.+...++..++.++-=.-++.+.. -.-|-+..-...+...|.. .
T Consensus 218 i~FdFL~~~~~y~SL-------llIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~ 290 (467)
T COG4267 218 IGFDFLLYRRKYPSL-------LLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLIS 290 (467)
T ss_pred cceehhhhhhcchHH-------HHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeee
Confidence 2222111 1111122 233344455555565543222211111 1113333333333333332 2
Q ss_pred HHHHHHHHHHhhh----cCC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHH
Q 011296 314 LGAAVSTRVSNEL----GAG-------NVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAP 382 (489)
Q Consensus 314 ~~~a~~~~~~~~~----g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~ 382 (489)
+-+...+.--+.+ |.+ +.++.....++.+.-.+-+-...++.++.+++.+...+.-|+.. .+...
T Consensus 291 lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~----l~lF~ 366 (467)
T COG4267 291 LETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYY----LDLFY 366 (467)
T ss_pred eeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHHH
Confidence 2333333222222 222 22333344455555555666777888889999998887765422 23444
Q ss_pred HHHHHHHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhHhHHHHHHh
Q 011296 383 LVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGF 431 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~ 431 (489)
+-..+.-.......+-++.--..+-+..+-.+..- .+.|-.+.++...
T Consensus 367 vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l~ 414 (467)
T COG4267 367 VDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFLE 414 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHHH
Confidence 44444444444444444444456666666666553 5566666666544
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=76.57 E-value=74 Score=30.57 Aligned_cols=136 Identities=17% Similarity=0.159 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHH
Q 011296 308 YAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLS 387 (489)
Q Consensus 308 ~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~ 387 (489)
..+..+++....-.+|+..=+||++.+...+.-...+....+...+.++++. .+|... .+=...+..
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~--------~~~~si-----~yk~l~~~~ 140 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFV--------NNQYSI-----VYKILACAL 140 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhh--------cCchhH-----HHHHHHHHH
Confidence 3444588888888888888888888888877777776666665555322211 122211 122333455
Q ss_pred HHHHhHHhHHhHHhhccCcchhhHHHHHHHHHHhhHhHHHHHHhhcCCCcchhhHHHHHhHHHHHHHHHHHHh
Q 011296 388 VIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITT 460 (489)
Q Consensus 388 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 460 (489)
.+..+..-+....+.+++|-+.....-+++ ..+...+++++-. .+..|..++.-++..+...+...+..
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Il 209 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYIL 209 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566666777788889999999888877776 6677777776644 58899999999988877666555444
No 47
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=70.56 E-value=1.1e+02 Score=29.90 Aligned_cols=37 Identities=3% Similarity=-0.048 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhc
Q 011296 329 GNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGY 365 (489)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 365 (489)
.+.++.+++.+++.++++.......+++....-|+..
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999888888777776665
No 48
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=66.77 E-value=1.6e+02 Score=30.25 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc--ChHHHHHHHHHHHHHHHH
Q 011296 42 AAPMVAVTLSQYLLQVVSMMMVGHL--GQLALSSTAMAISLASVT 84 (489)
Q Consensus 42 ~~p~~~~~~~~~~~~~i~~~~i~~~--g~~~~~~~~~~~~~~~~~ 84 (489)
-.-..++++...+....-..++..+ ++..+|....+..+..++
T Consensus 16 w~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~L 60 (524)
T PF05977_consen 16 WIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILL 60 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777776 566677777777766654
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=65.92 E-value=41 Score=24.40 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 011296 313 GLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIV 351 (489)
Q Consensus 313 ~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 351 (489)
-++......+...+.+||++++++..+++.+++.+-.+.
T Consensus 35 i~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 35 IVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 344445566778888999999999999998888654433
No 50
>PF14184 YrvL: Regulatory protein YrvL
Probab=65.74 E-value=69 Score=25.74 Aligned_cols=103 Identities=12% Similarity=0.143 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCChh-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhh
Q 011296 118 TAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQ-ISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALC 196 (489)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 196 (489)
..........++.+........+++++|.+=| ......-.+.....+.|+......+...+.-.+.++.... .....
T Consensus 6 ~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~--~l~~~ 83 (132)
T PF14184_consen 6 IFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFI--LLAFI 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHH--HHHHH
Confidence 34444444545555556667777888876532 2233333344556777888877777776665544444443 56667
Q ss_pred hhhhhhhHhhcccCCCcchhHHHHHH
Q 011296 197 LHIPICWSLVYKSGLGNLGGALAIGI 222 (489)
Q Consensus 197 ~~i~~~~~li~~~~~g~~g~a~a~~~ 222 (489)
+....++..++..+.=+.++.+.+..
T Consensus 84 id~~~t~~~i~~aD~~m~sI~is~~~ 109 (132)
T PF14184_consen 84 IDFLFTWITIYTADELMESISISTLS 109 (132)
T ss_pred HHHHHHHHHHHHHHHHhcceeeCcHH
Confidence 77777777777544334444444333
No 51
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=45.35 E-value=3.1e+02 Score=27.56 Aligned_cols=30 Identities=7% Similarity=-0.257 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 011296 31 LSGEVKKQGYIAAPMVAVTLSQYLLQVVSM 60 (489)
Q Consensus 31 ~~~~~k~l~~~~~p~~~~~~~~~~~~~i~~ 60 (489)
+.+.+|.++|-++|..++.++..+-...+.
T Consensus 12 d~~~~k~~~k~~i~~~i~~~l~~i~~~~~~ 41 (459)
T PF10337_consen 12 DRRSLKIMFKCWIAPWIALILCQIPPVARW 41 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 478899999999999998888766554433
No 52
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=40.68 E-value=4.5e+02 Score=27.51 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCh-HHHHHHHHHHHH
Q 011296 32 SGEVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHLGQ-LALSSTAMAISL 80 (489)
Q Consensus 32 ~~~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~g~-~~~~~~~~~~~~ 80 (489)
++.+-.+...++-.....+...+...+...+...+|+ +..+-++.+..+
T Consensus 40 ~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l 89 (599)
T PF06609_consen 40 PRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTL 89 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHH
Confidence 4555555556666665666666656666666666754 444444444333
No 53
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=32.61 E-value=4e+02 Score=24.48 Aligned_cols=89 Identities=9% Similarity=0.001 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHH-HHHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHH
Q 011296 308 YAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVI-FMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCL 386 (489)
Q Consensus 308 ~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~ 386 (489)
..+...+........-+...++|++++++...... ...+...++..+.+++.++.+-.+...=|+.. ..-+....-
T Consensus 110 ~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~fla~~~G~~~v~~il~~iP~~v---~~Gl~vagg 186 (265)
T TIGR00822 110 TIFVRTITVLFQHAADKAAKEANTAAISRLHVTAMLIQALRVAIPALIVALVSQSAVQAMLKAIPEVV---THGLQIAGG 186 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHCHHHH---HHHHHHHHh
Confidence 34444556666666777778889888865543322 22333344443333333444434433334322 234445555
Q ss_pred HHHHHhHHhHHhH
Q 011296 387 SVIMDSLQGVFSG 399 (489)
Q Consensus 387 ~~~~~~~~~~~~~ 399 (489)
-.|..++...+..
T Consensus 187 mLPAvGfAmLl~~ 199 (265)
T TIGR00822 187 IIVVVGYAMVLRM 199 (265)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555543
No 54
>PRK01637 hypothetical protein; Reviewed
Probab=30.97 E-value=4.4e+02 Score=24.45 Aligned_cols=15 Identities=0% Similarity=0.038 Sum_probs=7.0
Q ss_pred HHHHHHHhhhcCCCh
Q 011296 317 AVSTRVSNELGAGNV 331 (489)
Q Consensus 317 a~~~~~~~~~g~~~~ 331 (489)
+..--+.+.++.++.
T Consensus 111 ~l~~a~N~i~~~~~~ 125 (286)
T PRK01637 111 SIDKALNTIWRSKRK 125 (286)
T ss_pred HHHHHHHHHhCCCCC
Confidence 334444555554443
No 55
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=30.86 E-value=4.1e+02 Score=24.16 Aligned_cols=83 Identities=6% Similarity=-0.026 Sum_probs=46.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHhhccCcch
Q 011296 329 GNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQN 408 (489)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 408 (489)
+..+.+++....+..++...++.=++..+.+++ ..++.+|.+....+...++.. -+.++..++......-....+.+
T Consensus 109 ds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~~fW~~-~s~~f~~vY~~I~~L~~~r~r~~ 185 (261)
T PF10160_consen 109 DSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGWGFWFI-SSLVFALVYGFILILTPLRWRDR 185 (261)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCeehHHH-HHHHHHHHHHHHHHHHhcccccc
Confidence 455666676666666677777666777777776 556665555555554444443 33333333333333345555555
Q ss_pred hhHHHH
Q 011296 409 IAAFVN 414 (489)
Q Consensus 409 ~~~~~~ 414 (489)
.|..-+
T Consensus 186 LPar~S 191 (261)
T PF10160_consen 186 LPARPS 191 (261)
T ss_pred CCCCcc
Confidence 554433
No 56
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=28.00 E-value=1.6e+02 Score=18.44 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=12.1
Q ss_pred hhHHHHHhHHHHHHHHHHHHh
Q 011296 440 LWIGIQAGAFTQTLLLGIITT 460 (489)
Q Consensus 440 ~~~a~~~~~~~~~~~~~~~~~ 460 (489)
+|.|+.++.++...+......
T Consensus 8 VW~sYg~t~l~l~~li~~~~~ 28 (45)
T TIGR03141 8 VWLAYGITALVLAGLILWSLL 28 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777766665555444443
No 57
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=27.82 E-value=3.7e+02 Score=22.59 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 011296 32 SGEVKKQGYIAAPMVAVTLSQYLL 55 (489)
Q Consensus 32 ~~~~k~l~~~~~p~~~~~~~~~~~ 55 (489)
++.++++...+....+..+.....
T Consensus 48 ~~~~~~i~~~g~~~~~~~~~~f~~ 71 (182)
T PF00689_consen 48 KRLLRRILIQGLIMAAACFFAFFL 71 (182)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHH
Confidence 556777777776666555554443
No 58
>COG5393 Predicted membrane protein [Function unknown]
Probab=26.20 E-value=3.2e+02 Score=21.31 Aligned_cols=28 Identities=0% Similarity=-0.295 Sum_probs=17.3
Q ss_pred hhhHHHHHhHHHHHHHHHHHHhhcCHHH
Q 011296 439 GLWIGIQAGAFTQTLLLGIITTCTNWEK 466 (489)
Q Consensus 439 g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 466 (489)
.....+++-..+..+.+.|.+++.....
T Consensus 84 a~~a~~~vl~vl~~i~ciW~lrks~~s~ 111 (131)
T COG5393 84 AMIATTAVLLVLALIGCIWTLRKSRKST 111 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3444566666667777778777654433
No 59
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=24.65 E-value=6.6e+02 Score=24.49 Aligned_cols=36 Identities=3% Similarity=0.006 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHH
Q 011296 302 NTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIF 343 (489)
Q Consensus 302 ~i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~ 343 (489)
+.+.........++....-+ +=|.+++.|..++.+.
T Consensus 51 ~~y~~v~~~~vPlai~LlLl------~~Dlr~i~~~g~~~l~ 86 (378)
T PF05684_consen 51 PVYDFVWTYLVPLAIPLLLL------SADLRRILRLGGRLLL 86 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHH------HccHHHHHHhhHHHHH
Confidence 55555544444443333222 1355666655555443
No 60
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=23.06 E-value=5.9e+02 Score=23.32 Aligned_cols=88 Identities=5% Similarity=-0.010 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHhchhhhhcccCCcHHHHHHHHHHHHHHHHHH
Q 011296 310 IPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVT-ETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSV 388 (489)
Q Consensus 310 ~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~~~~~~~ 388 (489)
+...+........=++-.++|.+.+.+.-..+...-.. ..+|..+...+..+.+-.+...-|+... +-+.+..--.
T Consensus 112 ~~rt~~~~f~h~aDk~ae~gn~~~i~~~h~~~~~~~~~~~~ipaf~~~~~g~~~V~~~l~aiP~~l~---~GL~vaGgml 188 (265)
T COG3715 112 FVRTITVGFVHRADKAAEEGNTRGIERLHIGALLLQALRIAIPAFLVAYFGSSAVQSLLDAIPEWLT---NGLAVAGGML 188 (265)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhchHHHh---hhhhHhcchh
Confidence 33345555555566666788998888887777754443 3334444444445555555444454443 3355555555
Q ss_pred HHHhHHhHHhHH
Q 011296 389 IMDSLQGVFSGV 400 (489)
Q Consensus 389 ~~~~~~~~~~~~ 400 (489)
|..++..++...
T Consensus 189 pavGfAmll~~M 200 (265)
T COG3715 189 PAVGFAMLLNMM 200 (265)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 61
>PTZ00370 STEVOR; Provisional
Probab=22.70 E-value=1.4e+02 Score=27.47 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=15.9
Q ss_pred CcchhhHHHHHhHHHHHHH-HHHHHhhc--CHHHHHHH
Q 011296 436 RGRGLWIGIQAGAFTQTLL-LGIITTCT--NWEKQASK 470 (489)
Q Consensus 436 g~~g~~~a~~~~~~~~~~~-~~~~~~~~--~~~~~~~~ 470 (489)
+..|++.-..+--.+..++ +.|+++|+ .|++..+|
T Consensus 255 ~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 255 YPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 3344443333333333444 44555444 47766544
No 62
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=22.16 E-value=2.2e+02 Score=26.76 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=27.5
Q ss_pred cchhhHHHHHHHHHHhhHhHHHHHHhhcCCCc--------chhhHHHHHhHHHHHHHHHHHHhhcCH
Q 011296 406 WQNIAAFVNLGAFYLCGIPTAAILGFWLKFRG--------RGLWIGIQAGAFTQTLLLGIITTCTNW 464 (489)
Q Consensus 406 ~~~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~--------~g~~~a~~~~~~~~~~~~~~~~~~~~~ 464 (489)
..+..-..++++ ++..|..++-+.+ ++.. ...++......++.+++.+++++|++|
T Consensus 254 ~N~~mk~LTvvt--~IflP~t~IaGiy-GMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 254 MNEIMKILTVVS--TIFIPLTFIAGIY-GMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHH-hCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444455554 3455555554432 1211 112333333444555567778888777
No 63
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=21.94 E-value=5.1e+02 Score=25.03 Aligned_cols=16 Identities=0% Similarity=-0.301 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 011296 342 IFMAVTETIVVSATLF 357 (489)
Q Consensus 342 ~~~~~~~~~~~~~~~~ 357 (489)
.++.+.+.+|+.++--
T Consensus 34 s~lv~~~~lP~liF~~ 49 (385)
T PF03547_consen 34 SKLVFNVFLPALIFSS 49 (385)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555554433
No 64
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=21.57 E-value=8.2e+02 Score=24.41 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 011296 303 TIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVS 353 (489)
Q Consensus 303 i~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (489)
+.-+.-.+..|+|.++...+|+.+|+.+..+-+|...-++....-..+.+.
T Consensus 410 l~~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~Afivs~~iv~~ 460 (510)
T KOG2468|consen 410 LALLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTLAFIVSSFIVCL 460 (510)
T ss_pred hhhhhhheeeccchHHHHHHhhhhcceecCCCcceeehhhHHHHHHHHHHH
Confidence 344566778899999999999999999999988887776655554444333
No 65
>PRK09546 zntB zinc transporter; Reviewed
Probab=21.19 E-value=2.6e+02 Score=26.47 Aligned_cols=21 Identities=5% Similarity=-0.113 Sum_probs=12.8
Q ss_pred HHHhHHHHHHHHHHHHhhcCH
Q 011296 444 IQAGAFTQTLLLGIITTCTNW 464 (489)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~ 464 (489)
..+..++.++..+++++|++|
T Consensus 303 ~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 303 FCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 333344555566777887777
Done!