Query 011296
Match_columns 489
No_of_seqs 234 out of 1997
Neff 10.5
Searched_HMMs 13730
Date Mon Mar 25 05:13:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011296.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011296hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 57.2 57 0.0042 28.1 18.3 28 210-237 406-433 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 27.0 1.7E+02 0.013 24.6 37.5 25 434-458 406-430 (447)
3 d1m56d_ f.23.8.1 (D:) Bacteria 7.8 1.8E+02 0.013 15.6 4.3 33 326-358 4-36 (42)
4 d1nkzb_ f.3.1.1 (B:) Light-har 6.4 2.1E+02 0.015 15.1 4.1 33 330-362 7-39 (41)
5 d2iuba2 f.17.3.1 (A:286-349) M 5.8 2.9E+02 0.021 16.1 3.6 8 421-428 15-22 (64)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 4.7 4.4E+02 0.032 16.9 8.6 18 255-272 69-86 (100)
7 d1j1va_ a.4.12.2 (A:) Chromoso 4.7 3.2E+02 0.023 17.5 3.4 36 306-341 36-71 (94)
8 d2fyuk1 f.23.15.1 (K:1-53) Sub 4.1 2.7E+02 0.02 15.9 2.1 27 100-126 2-28 (53)
9 d3dhwa1 f.58.1.1 (A:6-208) D-m 4.1 4.6E+02 0.033 19.1 4.5 33 34-66 129-161 (203)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 3.0 4.1E+02 0.03 16.8 2.7 18 255-272 60-77 (91)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=57.18 E-value=57 Score=28.05 Aligned_cols=28 Identities=25% Similarity=0.160 Sum_probs=14.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 011296 210 GLGNLGGALAIGISNWLNVTFLAIYMKF 237 (489)
Q Consensus 210 ~~g~~g~a~a~~~~~~~~~~~~~~~~~~ 237 (489)
+.|..+..+.......+..++......+
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566665555555555555555444433
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=27.00 E-value=1.7e+02 Score=24.60 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=13.2
Q ss_pred CCCcchhhHHHHHhHHHHHHHHHHH
Q 011296 434 KFRGRGLWIGIQAGAFTQTLLLGII 458 (489)
Q Consensus 434 ~~g~~g~~~a~~~~~~~~~~~~~~~ 458 (489)
+.|..+..+.......+..++....
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666655555555444444433
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.75 E-value=1.8e+02 Score=15.64 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=18.8
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011296 326 LGAGNVQKARVAVYAVIFMAVTETIVVSATLFA 358 (489)
Q Consensus 326 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (489)
.|+=|.+.-.|.+.-.+++..-.++.+.+++++
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i~~lif 36 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIVAALIF 36 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666555544444443
No 4
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=6.43 E-value=2.1e+02 Score=15.14 Aligned_cols=33 Identities=9% Similarity=-0.018 Sum_probs=24.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 011296 330 NVQKARVAVYAVIFMAVTETIVVSATLFASRRV 362 (489)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (489)
+.|++.+.+..+.+....+.+..=++.+...++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 457888888888888888777766666655554
No 5
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.76 E-value=2.9e+02 Score=16.07 Aligned_cols=8 Identities=25% Similarity=0.202 Sum_probs=3.3
Q ss_pred hhHhHHHH
Q 011296 421 CGIPTAAI 428 (489)
Q Consensus 421 ~~i~~~~~ 428 (489)
+-+|..++
T Consensus 15 iflP~t~i 22 (64)
T d2iuba2 15 IFMPLTFI 22 (64)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.69 E-value=4.4e+02 Score=16.87 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=12.9
Q ss_pred cHHHHHHHHhhHHHHHHH
Q 011296 255 GIGEFFHFAIPSAVMICL 272 (489)
Q Consensus 255 ~~k~l~~~~~p~~~~~~~ 272 (489)
..-|+....+|..+-...
T Consensus 69 ~~LEiiWTviP~lILi~l 86 (100)
T d3dtub2 69 SPLEIAWTIVPIVILVAI 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 347888889998775444
No 7
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=4.65 E-value=3.2e+02 Score=17.46 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCChHHHHHHHHHH
Q 011296 306 TLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAV 341 (489)
Q Consensus 306 ~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~~~~ 341 (489)
+...++--......+-+|+.+|.+|+.-+.+.+++.
T Consensus 36 va~yL~r~~~~~sl~~Ig~~fg~rdHsTV~~a~kki 71 (94)
T d1j1va_ 36 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 71 (94)
T ss_dssp HHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHhCCCCchHHHHHHHHH
Confidence 344455566667788899999989998888877763
No 8
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.10 E-value=2.7e+02 Score=15.85 Aligned_cols=27 Identities=15% Similarity=-0.111 Sum_probs=16.4
Q ss_pred HHhhhCCcccchHHHHHHHHHHHHHHH
Q 011296 100 CGQAYGAQQYQRIGTQTYTAIFCLFLV 126 (489)
Q Consensus 100 ~s~~~g~~~~~~~~~~~~~~~~~~~~~ 126 (489)
+++.+|.+..+.++..+.+....+..-
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~ 28 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVG 28 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhh
Confidence 456677666666666666665544443
No 9
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=4.09 E-value=4.6e+02 Score=19.08 Aligned_cols=33 Identities=18% Similarity=0.039 Sum_probs=17.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 011296 34 EVKKQGYIAAPMVAVTLSQYLLQVVSMMMVGHL 66 (489)
Q Consensus 34 ~~k~l~~~~~p~~~~~~~~~~~~~i~~~~i~~~ 66 (489)
..|-++-.+.|..++.........+....+..+
T Consensus 129 ~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ 161 (203)
T d3dhwa1 129 VRKVLLPEALPGLVNAATITLITLVGYSAMGGA 161 (203)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred hHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555543
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.05 E-value=4.1e+02 Score=16.80 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=12.5
Q ss_pred cHHHHHHHHhhHHHHHHH
Q 011296 255 GIGEFFHFAIPSAVMICL 272 (489)
Q Consensus 255 ~~k~l~~~~~p~~~~~~~ 272 (489)
...|+.-..+|..+-..+
T Consensus 60 ~~lEi~WtiIP~iil~~i 77 (91)
T d1fftb2 60 NKVEAVVWTVPILIIIFL 77 (91)
T ss_dssp SHHHHHTTHHHHHHHHHH
T ss_pred ceehhhHHHHHHHHHHHH
Confidence 346888888998774443
Done!