BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011301
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
Length = 444
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 100/224 (44%), Gaps = 21/224 (9%)
Query: 5 TEAKLEP----FLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEFS-DGVLLVVPLDLAI 59
TE L P F +WLQ V +K S ++G G+ + + S + V+L VP L I
Sbjct: 2 TEPSLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWI 61
Query: 60 TPMRVLQDPLIGPECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPL 119
P V IG C E+ +ILFL ER R++S WK Y +LP + +
Sbjct: 62 NPDAVAASE-IGRVC------SELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTI 114
Query: 120 WFTDDELLELKGTTLYRATELQKQNXXXXXXXXXXXXXXXXXXXXGDSESEVSFEDFLWA 179
+++++EL EL+G+ L + T K+ D V+ +DF WA
Sbjct: 115 YWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDP---VTLDDFFWA 171
Query: 180 NSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNS 223
I +RA S + +N + D IN+SA ++ + ++
Sbjct: 172 FGILRSRAF------SRLRNENLVVVPMADLINHSAGVTTEDHA 209
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
Length = 440
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 17/221 (7%)
Query: 4 STEAKLEPFLQWLQVNKVELRGCKIKYSDESKGFGIFSSNEFS-DGVLLVVPLDLAITPM 62
S ++ F +WLQ V +K S ++G G+ + + S + V+L VP L I P
Sbjct: 1 SLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPD 60
Query: 63 RVLQDPLIGPECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPLWFT 122
V IG C E+ +ILFL ER R++S WK Y +LP + ++++
Sbjct: 61 AVAASE-IGRVC------SELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWS 113
Query: 123 DDELLELKGTTLYRATELQKQNXXXXXXXXXXXXXXXXXXXXGDSESEVSFEDFLWANSI 182
++EL EL+G+ L + T K+ D V+ +DF WA I
Sbjct: 114 EEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDP---VTLDDFFWAFGI 170
Query: 183 FWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNS 223
+RA S + +N + D IN+SA ++ + ++
Sbjct: 171 LRSRAF------SRLRNENLVVVPMADLINHSAGVTTEDHA 205
>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3
Length = 497
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 12/183 (6%)
Query: 14 QWLQVNKVELRGCK-IKYSDESKGFGIFSSNEF-SDGVLLVVPLDLAITPMRVLQDPLIG 71
+W N + G + + + +E GFG+ ++ + ++ + L VP L T + ++ ++G
Sbjct: 83 KWASENGASVEGFEXVNFKEE--GFGLRATRDIKAEELFLWVPRKLLXT-VESAKNSVLG 139
Query: 72 P---ECRAMFEDGEVDDRFLMILFLTVERLRKNSSWKPYLDMLPTTFGNPLWFTDDELLE 128
P + R + G + + L ER NS W+PY+ LP+ + PL+F +DE+
Sbjct: 140 PLYSQDRILQAXGNI----ALAFHLLCERASPNSFWQPYIQTLPSEYDTPLYFEEDEVRY 195
Query: 129 LKGTTLYRATELQKQNXXXXXXXXXXXXXXXXXXXXGDSESEVSFEDFLWANSIFWTRAL 188
L+ T Q +N + ++ED+ WA S TR
Sbjct: 196 LQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVXTRQN 255
Query: 189 NIP 191
IP
Sbjct: 256 QIP 258
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 21/86 (24%)
Query: 264 GLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSS------FHSEKEISISY 317
L+P D CNH GLIT + Y L +R F + ++I I Y
Sbjct: 268 ALIPLWDXCNHT-----------NGLIT----TGYNLEDDRCECVALQDFRAGEQIYIFY 312
Query: 318 GNKGNEELLYLYGFVIDNNPDDYLMI 343
G + N E + GF DNN D + I
Sbjct: 313 GTRSNAEFVIHSGFFFDNNSHDRVKI 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,468,557
Number of Sequences: 62578
Number of extensions: 592615
Number of successful extensions: 1326
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1315
Number of HSP's gapped (non-prelim): 8
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)