Query 011301
Match_columns 489
No_of_seqs 338 out of 1220
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 23:50:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1338 Uncharacterized conser 100.0 2.6E-34 5.6E-39 284.1 17.9 291 7-368 7-314 (466)
2 KOG1337 N-methyltransferase [G 100.0 6.2E-30 1.3E-34 272.9 21.8 288 6-364 3-321 (472)
3 PF00856 SET: SET domain; Int 99.6 3.5E-15 7.5E-20 134.2 8.0 49 262-318 112-162 (162)
4 smart00317 SET SET (Su(var)3-9 98.0 4.3E-06 9.3E-11 71.1 3.9 48 264-317 69-116 (116)
5 PF09273 Rubis-subs-bind: Rubi 97.6 0.00012 2.7E-09 63.9 5.9 86 350-476 2-111 (128)
6 KOG1085 Predicted methyltransf 94.3 0.034 7.5E-07 54.5 3.0 51 270-327 335-386 (392)
7 KOG2589 Histone tail methylase 93.2 0.091 2E-06 53.4 3.8 55 264-338 193-247 (453)
8 KOG1079 Transcriptional repres 90.2 0.26 5.6E-06 53.8 3.6 41 269-318 666-709 (739)
9 KOG4442 Clathrin coat binding 89.5 0.34 7.4E-06 53.2 3.8 41 269-318 194-237 (729)
10 smart00317 SET SET (Su(var)3-9 81.3 2 4.4E-05 35.7 3.9 34 27-61 3-37 (116)
11 KOG1080 Histone H3 (Lys4) meth 79.8 1.4 3.1E-05 51.3 3.1 44 268-318 939-983 (1005)
12 COG2940 Proteins containing SE 78.1 1.3 2.8E-05 48.0 2.1 44 269-319 406-450 (480)
13 KOG1082 Histone H3 (Lys9) meth 71.3 3.5 7.6E-05 42.9 3.2 51 270-322 274-324 (364)
14 KOG1083 Putative transcription 70.2 3.9 8.5E-05 47.2 3.4 44 269-321 1251-1297(1306)
15 PHA01735 hypothetical protein 37.8 39 0.00086 26.3 3.0 40 437-477 6-46 (76)
16 KOG2084 Predicted histone tail 29.5 71 0.0015 33.7 4.6 60 262-331 199-265 (482)
17 KOG1338 Uncharacterized conser 26.5 7.7 0.00017 40.3 -3.2 71 262-343 269-343 (466)
18 KOG2461 Transcription factor B 25.7 55 0.0012 34.5 2.8 32 299-330 124-155 (396)
No 1
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.6e-34 Score=284.10 Aligned_cols=291 Identities=18% Similarity=0.233 Sum_probs=220.8
Q ss_pred hCHHHHHHHHHHCC-ccccC-eeEEEec---CCcceEEEEcCCC-CCCeEEEecccccccccccccCCCCChHHhhhhcC
Q 011301 7 AKLEPFLQWLQVNK-VELRG-CKIKYSD---ESKGFGIFSSNEF-SDGVLLVVPLDLAITPMRVLQDPLIGPECRAMFED 80 (489)
Q Consensus 7 ~~~~~fl~Wl~~~G-~~~~~-v~i~~~~---~~~GrGl~A~~~I-~ge~llsIP~~~~lt~~~~~~~~~~g~~~~~~l~~ 80 (489)
...+.|+.|++..+ .++++ |.+.+.+ +..|+|++|+++| +|+.||++|++++|++.+...-..+....+..+
T Consensus 7 d~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~L-- 84 (466)
T KOG1338|consen 7 DLAKRFLLWGKLTLELETSPKIDNNDLPWVERIAGAGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVLL-- 84 (466)
T ss_pred cHHHHHHHHHHHhhheeecccccccccchhhhhcccceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHHh--
Confidence 34789999999987 78887 7777542 2359999999999 999999999999999988643221223334445
Q ss_pred CCCChhHHHHHHHHHHhhcCC-CCcHHHHhhCCC--CCCCCCCCCHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 011301 81 GEVDDRFLMILFLTVERLRKN-SSWKPYLDMLPT--TFGNPLWFTDDELLELKGTTLYRATELQKQNLLTLYDDKVKDLV 157 (489)
Q Consensus 81 ~~l~~~~~Lal~Ll~E~~~~~-S~w~pYl~~LP~--~~~~Pl~Ws~~el~~L~gt~l~~~~~~~~~~~~~~y~~~~~~l~ 157 (489)
..++.|..|++.|++|..-++ |+|+|||+.+|+ ..++|+||+++|++.|..+.+++.+.++++++.++|...++++.
T Consensus 85 ne~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i~~i~pf~ 164 (466)
T KOG1338|consen 85 NEVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPARMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFIFVIQPFK 164 (466)
T ss_pred hcCCcHHHHHHHHHHHhhcccccccccHHHhCCChhhcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHHHHHHHHH
Confidence 368899999999999987654 999999999998 47899999999999887666777688999999999999999999
Q ss_pred HHhhccCCCCCCCCCHHHHHHHHHHHHhhCCCCCCCCCCCCCccccccccccccccccccccCcCCcccccccccchhhh
Q 011301 158 KKLLVLDGDSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNSAELSNDHNSRGELINGLNDIKNE 237 (489)
Q Consensus 158 ~~~~~~~~~~~~~~t~e~f~wA~siv~SRaf~i~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (489)
+.+|.++ ..+++++|+++++++++++|.++...+ ..+ .
T Consensus 165 ~~~p~vf----s~~slEdF~y~~Al~laysfdve~~~s------~~~-----------------------------~--- 202 (466)
T KOG1338|consen 165 QHCPIVF----SRPSLEDFMYAYALGLAYSFDVEFLLS------LDN-----------------------------L--- 202 (466)
T ss_pred HhCcchh----cccCHHHHHHHHHHHHHHheeeehhcc------hhh-----------------------------h---
Confidence 9888765 458999999999999999999986532 000 0
Q ss_pred hhhhccccCCCCccccccCCccccceeeeeeecccCCCCC-CCceEEEcCCCcccccccceeEEEeeccccCCCCeEeec
Q 011301 238 AQRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLK-AAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISIS 316 (489)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~~~~~~LvPl~DmlNH~~~-~~~~~~~d~~g~~~g~~~~~~l~~~a~r~i~~GeEIfis 316 (489)
.++. +.......|+|++||+||+.. +|+...++.+ ++.|+|.|+|.+|+||+++
T Consensus 203 ----------eee~-----e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~N----------cL~mva~r~iekgdev~n~ 257 (466)
T KOG1338|consen 203 ----------EEES-----EIECNGKLMTPIADFLNHDGLKANANLRYEDN----------CLEMVADRNIEKGDEVDNS 257 (466)
T ss_pred ----------hhhh-----ccccCcccccchhhhhccchhhcccceeccCc----------ceeeeecCCCCCccccccc
Confidence 0000 111124699999999999976 6777766432 5899999999999999999
Q ss_pred cCCCChHHHHHhCCcccCC-CCCceEEeecc------ccccCCCCChHHHHHHHHHhcc
Q 011301 317 YGNKGNEELLYLYGFVIDN-NPDDYLMIHYP------AEAIHSIPLSDSKALLLEEQKA 368 (489)
Q Consensus 317 YG~~sN~eLL~~YGFv~~~-Np~D~v~i~l~------~~~~~~~~~~~~k~~ll~~~~~ 368 (489)
||-|+|. |++||.+.-. -..+.-.+.++ .++..+++....|.-++..|+.
T Consensus 258 dg~~p~~--l~~l~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~il~ql~nt 314 (466)
T KOG1338|consen 258 DGLKPMG--LLKLTKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLILLQLHNT 314 (466)
T ss_pred cccCcch--hhhhhhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHHHHHhccc
Confidence 9999999 8888887642 11111111111 3455566767777665555554
No 2
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=99.97 E-value=6.2e-30 Score=272.93 Aligned_cols=288 Identities=26% Similarity=0.373 Sum_probs=198.8
Q ss_pred hhCHHHHHHHHHHCCccccC-eeEEEecCCcceEEEEc-CCC-CCCeEEEecccccccccccccCCCCChH---------
Q 011301 6 EAKLEPFLQWLQVNKVELRG-CKIKYSDESKGFGIFSS-NEF-SDGVLLVVPLDLAITPMRVLQDPLIGPE--------- 73 (489)
Q Consensus 6 ~~~~~~fl~Wl~~~G~~~~~-v~i~~~~~~~GrGl~A~-~~I-~ge~llsIP~~~~lt~~~~~~~~~~g~~--------- 73 (489)
.+++.+|++|.+.+|+..+. +.++... ..|.++.+. +.+ ..+.+..+..........+...+..+..
T Consensus 3 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 81 (472)
T KOG1337|consen 3 VDVLSALLRWAQCNGISLSSSLDLRPDE-LKGLVRWAASESIASSENIKSLKFWLTGNGLSSSKSSLPGNDIDEWPLLVS 81 (472)
T ss_pred hhHHHHhhhHHhccCccCCcccccCccc-cCcceeeeecccCCCccccccceeccccCCcchhhhccccccccccchhhh
Confidence 46789999999999999876 6555544 367777777 333 4433333333322222222111111100
Q ss_pred Hhh--------------hhcC--CCCChh-HHHHHHHHHHhhcC-CCCcHHHHhhCCCCCCCCCCCCHHHHhcCCCCChH
Q 011301 74 CRA--------------MFED--GEVDDR-FLMILFLTVERLRK-NSSWKPYLDMLPTTFGNPLWFTDDELLELKGTTLY 135 (489)
Q Consensus 74 ~~~--------------~l~~--~~l~~~-~~Lal~Ll~E~~~~-~S~w~pYl~~LP~~~~~Pl~Ws~~el~~L~gt~l~ 135 (489)
++. .... -..+.. ..+++++++++... .|.|+||+..||+.+++|++|..+++..|.++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~~~p~~~~~~~v~~l~~~~~~ 161 (472)
T KOG1337|consen 82 IRLIKGEKLLLVPPLLLLIAKRKPYNDLLPIALALFLLLEWAHGEISKWKPYISTLPSQYNSPLLWSEDEVKSLLSTPLF 161 (472)
T ss_pred hhhhhhhhhccCCchhhhccccccCccccHHHHHHHHHHhhhccccccchhhhhhchhhcCCccccCHHHHHHhhcchhh
Confidence 000 0000 011223 77899999999865 49999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCCCCCHHHHHHHHHHHHhhCCCCCCCCCCCCCccccccccccccccc
Q 011301 136 RATELQKQNLLTLYDDKVKDLVKKLLVLDG-DSESEVSFEDFLWANSIFWTRALNIPLPHSYVFPQNQEDLNKYDSINNS 214 (489)
Q Consensus 136 ~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~-~~~~~~t~e~f~wA~siv~SRaf~i~~~~~~~~P~~~~~~~~~~~~~~~ 214 (489)
..+..+++.++..+..+. .+...++..++ .....+++++|.|++++|+||+|+.+.... ..
T Consensus 162 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~------~~----------- 223 (472)
T KOG1337|consen 162 EIVASRRQNLVNKSAELL-EVLQSHPSLFGSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQR------LT----------- 223 (472)
T ss_pred HHHHHHHHHhhhhHHHHH-HHHHhccccccccccCccchHHHHHHHHHHhhhhhccccccc------cc-----------
Confidence 988887777777555443 44445544431 223348999999999999999999876421 00
Q ss_pred cccccCcCCcccccccccchhhhhhhhccccCCCCccccccCCccccceeeeeeecccCCCCCCCceEEEcCCCcccccc
Q 011301 215 AELSNDHNSRGELINGLNDIKNEAQRVNSQVNGATSTLTSTQGETLWIEGLVPGIDFCNHDLKAAATWEVDGTGLITGVP 294 (489)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~LvPl~DmlNH~~~~~~~~~~d~~g~~~g~~ 294 (489)
. .+. ....+|+|++||+||+++. +.+.++....
T Consensus 224 ~------------------------------~~~-----------~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~----- 256 (472)
T KOG1337|consen 224 A------------------------------GDP-----------DDNEALAPLIDLLNHSPEV-IKAGYNQEDE----- 256 (472)
T ss_pred c------------------------------CCC-----------CcchhhhhhHHhhccCchh-ccccccCCCC-----
Confidence 0 000 0136999999999999988 4444433221
Q ss_pred cceeEEEeeccccCCCCeEeeccCCCChHHHHHhCCcccCCCCCceEEeeccccccCCCCChHHHHHHHH
Q 011301 295 FSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPDDYLMIHYPAEAIHSIPLSDSKALLLE 364 (489)
Q Consensus 295 ~~~~l~~~a~r~i~~GeEIfisYG~~sN~eLL~~YGFv~~~Np~D~v~i~l~~~~~~~~~~~~~k~~ll~ 364 (489)
.+.+++.++|++||||||+||+++|++||.+||||.++||+|.|.+. ..+...++....|...+.
T Consensus 257 ---~~~l~~~~~v~~geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~--~~l~~~~~~~~~~~~~~~ 321 (472)
T KOG1337|consen 257 ---AVELVAERDVSAGEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLK--LALPPEDVSYLDKSDVLK 321 (472)
T ss_pred ---cEEEEEeeeecCCCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEe--ecccccccchhHHHHHHh
Confidence 25788999999999999999999999999999999999999999876 566666766666654333
No 3
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.58 E-value=3.5e-15 Score=134.22 Aligned_cols=49 Identities=31% Similarity=0.365 Sum_probs=40.5
Q ss_pred ceeeeeeecccCCCCCCCceEEEc--CCCcccccccceeEEEeeccccCCCCeEeeccC
Q 011301 262 IEGLVPGIDFCNHDLKAAATWEVD--GTGLITGVPFSMYLLSVERSSFHSEKEISISYG 318 (489)
Q Consensus 262 ~~~LvPl~DmlNH~~~~~~~~~~d--~~g~~~g~~~~~~l~~~a~r~i~~GeEIfisYG 318 (489)
..+|+|++||+||+..+||.+.++ ..+. .+.++|.|+|++|||||++||
T Consensus 112 ~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~--------~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 112 GIALYPFADMLNHSCDPNCEVSFDFDGDGG--------CLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEETGGGGSEEESSTSEEEEEEEETTTT--------EEEEEESS-B-TTSBEEEEST
T ss_pred ccccCcHhHheccccccccceeeEeecccc--------eEEEEECCccCCCCEEEEEEC
Confidence 469999999999999999988876 2221 478999999999999999999
No 4
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=98.03 E-value=4.3e-06 Score=71.13 Aligned_cols=48 Identities=13% Similarity=0.064 Sum_probs=38.8
Q ss_pred eeeeeecccCCCCCCCceEEEcCCCcccccccceeEEEeeccccCCCCeEeecc
Q 011301 264 GLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISY 317 (489)
Q Consensus 264 ~LvPl~DmlNH~~~~~~~~~~d~~g~~~g~~~~~~l~~~a~r~i~~GeEIfisY 317 (489)
.+.|+++|+||+..+|+.+.....+.. ..+.++|.|+|++||||+++|
T Consensus 69 ~~~~~~~~iNHsc~pN~~~~~~~~~~~------~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIARFINHSCEPNCELLFVEVNGD------SRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHHeeCCCCCCCEEEEEEEECCC------cEEEEEECCCcCCCCEEeecC
Confidence 589999999999999998865432211 136788999999999999999
No 5
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=97.59 E-value=0.00012 Score=63.89 Aligned_cols=86 Identities=26% Similarity=0.293 Sum_probs=63.5
Q ss_pred cCCCCChHHHHHHHHHhcccccccCchhhhcccccccCCCCCCCCCccccccccccccccccccCccccccCCCchhHHH
Q 011301 350 IHSIPLSDSKALLLEEQKAQLRCLLPKSLLEHGFFAAGHPKDGNNDNKLEVDRISSFSWSGQRRMPSYLNKLVFPENFLT 429 (489)
Q Consensus 350 ~~~~~~~~~k~~ll~~~~~~~~~~lp~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (489)
.++||+++.|.++|+.+|+... +.|. +.+. +. +|+++++
T Consensus 2 ~~~D~l~~~K~~lL~~~gl~~~----------~~f~--------------------l~~~----------~~-~~~~Ll~ 40 (128)
T PF09273_consen 2 SPSDPLFEEKKQLLEEHGLSGD----------QTFD--------------------LRAD----------GP-LPPELLA 40 (128)
T ss_dssp -TTSTTHHHHHHHHHHTTS-SE----------EEEE--------------------EECC----------SS-SHHHHHH
T ss_pred CchhhhHHHHHHHHHHCCCCCC----------ceee--------------------eeCC----------CC-CCHHHHH
Confidence 3678999999999998876311 1110 1111 12 7999999
Q ss_pred HHHHHhCCHHHHHHH------------------------HHHHHHHhcCCCCCCCChHHHHHHHHHHhcCc
Q 011301 430 ALRTIAMQEDEISKV------------------------SSLLEELVGSGGERQPSDAEVRAAVWETCGDS 476 (489)
Q Consensus 430 ~lR~l~~~~~e~~~~------------------------~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 476 (489)
++|+++|+++|+..+ ...|..++..++++|||++|++.++.+-....
T Consensus 41 ~lRv~~~~~~e~~~~~~~~~~~~~~~~~~~ls~~nE~~~l~~L~~~~~~~L~~y~TtleeD~~~L~~~~~~ 111 (128)
T PF09273_consen 41 ALRVLLMTEEELRALKSLADSSEWSDRSEPLSPENEIAALQFLIDLCEARLSAYPTTLEEDEELLQSNDLS 111 (128)
T ss_dssp HHHHHHSCHHHHHHHHHCGTTTHCCHCCC-SBHHHHHHHHHHHHHHHHHHHTTSSS-HHHHHHHCHTCCCH
T ss_pred HHHHHHcChHHHHHHHHhhcccccccccCCCchhhHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHhcCCCc
Confidence 999999999999987 24788888999999999999999887764433
No 6
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=94.27 E-value=0.034 Score=54.52 Aligned_cols=51 Identities=24% Similarity=0.417 Sum_probs=39.2
Q ss_pred cccCCCCCCCceEEEcC-CCcccccccceeEEEeeccccCCCCeEeeccCCCChHHHHH
Q 011301 270 DFCNHDLKAAATWEVDG-TGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLY 327 (489)
Q Consensus 270 DmlNH~~~~~~~~~~d~-~g~~~g~~~~~~l~~~a~r~i~~GeEIfisYG~~sN~eLL~ 327 (489)
-++||+...|+.-.+-. +|. | .|++.|.++|.+|||+...||++|-+.++.
T Consensus 335 RLINHS~~gNl~TKvv~Idg~----p---HLiLvA~rdIa~GEELlYDYGDRSkesi~~ 386 (392)
T KOG1085|consen 335 RLINHSVRGNLKTKVVEIDGS----P---HLILVARRDIAQGEELLYDYGDRSKESIAK 386 (392)
T ss_pred hhhcccccCcceeeEEEecCC----c---eEEEEeccccccchhhhhhccccchhHHhh
Confidence 37999988776543321 332 3 388999999999999999999999887764
No 7
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=93.16 E-value=0.091 Score=53.36 Aligned_cols=55 Identities=31% Similarity=0.414 Sum_probs=40.2
Q ss_pred eeeeeecccCCCCCCCceEEEcCCCcccccccceeEEEeeccccCCCCeEeeccCCCChHHHHHhCCcccCCCCC
Q 011301 264 GLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYGFVIDNNPD 338 (489)
Q Consensus 264 ~LvPl~DmlNH~~~~~~~~~~d~~g~~~g~~~~~~l~~~a~r~i~~GeEIfisYG~~sN~eLL~~YGFv~~~Np~ 338 (489)
-|=|- =|+||+..+||++.. .|..+ ..++..|+|++||||.--||. ||.-++|.+
T Consensus 193 wLGPa-afINHDCrpnCkFvs--~g~~t-------acvkvlRDIePGeEITcFYgs----------~fFG~~N~~ 247 (453)
T KOG2589|consen 193 WLGPA-AFINHDCRPNCKFVS--TGRDT-------ACVKVLRDIEPGEEITCFYGS----------GFFGENNEE 247 (453)
T ss_pred eeccH-HhhcCCCCCCceeec--CCCce-------eeeehhhcCCCCceeEEeecc----------cccCCCCce
Confidence 44453 489999999998754 34211 346678999999999999997 666666654
No 8
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=90.23 E-value=0.26 Score=53.82 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=32.0
Q ss_pred ecccCCCCCCCceEEE---cCCCcccccccceeEEEeeccccCCCCeEeeccC
Q 011301 269 IDFCNHDLKAAATWEV---DGTGLITGVPFSMYLLSVERSSFHSEKEISISYG 318 (489)
Q Consensus 269 ~DmlNH~~~~~~~~~~---d~~g~~~g~~~~~~l~~~a~r~i~~GeEIfisYG 318 (489)
+=|+||+..+||...+ .+++. +-+.|.|.|.+|||+|..|+
T Consensus 666 ~rFANHS~nPNCYAkvm~V~GdhR---------IGifAkRaIeagEELffDYr 709 (739)
T KOG1079|consen 666 IRFANHSFNPNCYAKVMMVAGDHR---------IGIFAKRAIEAGEELFFDYR 709 (739)
T ss_pred hhhccCCCCCCcEEEEEEecCCcc---------eeeeehhhcccCceeeeeec
Confidence 4489999999998754 33332 34668999999999999997
No 9
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.47 E-value=0.34 Score=53.16 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=29.9
Q ss_pred ecccCCCCCCCce---EEEcCCCcccccccceeEEEeeccccCCCCeEeeccC
Q 011301 269 IDFCNHDLKAAAT---WEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYG 318 (489)
Q Consensus 269 ~DmlNH~~~~~~~---~~~d~~g~~~g~~~~~~l~~~a~r~i~~GeEIfisYG 318 (489)
+=|+||+.++||. |.|.+. . .+=+-+.+.|++||||...|+
T Consensus 194 aRFiNHSC~PNa~~~KWtV~~~-l--------RvGiFakk~I~~GEEITFDYq 237 (729)
T KOG4442|consen 194 ARFINHSCDPNAEVQKWTVPDE-L--------RVGIFAKKVIKPGEEITFDYQ 237 (729)
T ss_pred HHhhcCCCCCCceeeeeeeCCe-e--------EEEEeEecccCCCceeeEecc
Confidence 3489999999974 766532 1 122336899999999998887
No 10
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=81.32 E-value=2 Score=35.74 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=26.2
Q ss_pred eEEEecCCcceEEEEcCCC-CCCeEEEecccccccc
Q 011301 27 KIKYSDESKGFGIFSSNEF-SDGVLLVVPLDLAITP 61 (489)
Q Consensus 27 ~i~~~~~~~GrGl~A~~~I-~ge~llsIP~~~~lt~ 61 (489)
.+...+ +.|+|++|+++| +|+.|+..|-..+...
T Consensus 3 ~~~~~~-~~G~gl~a~~~i~~g~~i~~~~g~~~~~~ 37 (116)
T smart00317 3 EVFKSP-GKGWGVRATEDIPKGEFIGEYVGEIITSE 37 (116)
T ss_pred EEEecC-CCcEEEEECCccCCCCEEEEEEeEEECHH
Confidence 344445 599999999999 9998888887766543
No 11
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=79.84 E-value=1.4 Score=51.29 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=33.5
Q ss_pred eecccCCCCCCCceEEEcC-CCcccccccceeEEEeeccccCCCCeEeeccC
Q 011301 268 GIDFCNHDLKAAATWEVDG-TGLITGVPFSMYLLSVERSSFHSEKEISISYG 318 (489)
Q Consensus 268 l~DmlNH~~~~~~~~~~d~-~g~~~g~~~~~~l~~~a~r~i~~GeEIfisYG 318 (489)
++=|+||+..+||+..+-. +|.. .+++.|.|+|.+||||+-+|-
T Consensus 939 iAr~InHsC~PNCyakvi~V~g~~-------~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 939 IARFINHSCNPNCYAKVITVEGDK-------RIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred hhheeecccCCCceeeEEEecCee-------EEEEEEecccccCceeeeecc
Confidence 4558999999999765422 2321 367889999999999998875
No 12
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=78.12 E-value=1.3 Score=47.96 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=33.6
Q ss_pred ecccCCCCCCCceEEEcC-CCcccccccceeEEEeeccccCCCCeEeeccCC
Q 011301 269 IDFCNHDLKAAATWEVDG-TGLITGVPFSMYLLSVERSSFHSEKEISISYGN 319 (489)
Q Consensus 269 ~DmlNH~~~~~~~~~~d~-~g~~~g~~~~~~l~~~a~r~i~~GeEIfisYG~ 319 (489)
.=++||+..+|+.+.... .|.+ .+...+.++|++||||.++||.
T Consensus 406 ~r~~nHS~~pN~~~~~~~~~g~~-------~~~~~~~rDI~~geEl~~dy~~ 450 (480)
T COG2940 406 ARFINHSCTPNCEASPIEVNGIF-------KISIYAIRDIKAGEELTYDYGP 450 (480)
T ss_pred cceeecCCCCCcceecccccccc-------eeeecccccchhhhhhcccccc
Confidence 338999999998876432 3311 3567789999999999999986
No 13
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=71.34 E-value=3.5 Score=42.93 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=34.8
Q ss_pred cccCCCCCCCceEEEcCCCcccccccceeEEEeeccccCCCCeEeeccCCCCh
Q 011301 270 DFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGN 322 (489)
Q Consensus 270 DmlNH~~~~~~~~~~d~~g~~~g~~~~~~l~~~a~r~i~~GeEIfisYG~~sN 322 (489)
=|+||+..+|+.|..--.+.. .+.-..+.+.|.++|.+|+|+...||..-+
T Consensus 274 RfinHSC~PN~~~~~v~~~~~--~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~ 324 (364)
T KOG1082|consen 274 RFINHSCSPNLLYQAVFQDEF--VLLYLRIGFFALRDISPGEELTLDYGKAYK 324 (364)
T ss_pred ccccCCCCccceeeeeeecCC--ccchheeeeeeccccCCCcccchhhccccc
Confidence 379999999987743111111 111124566789999999999999997544
No 14
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=70.25 E-value=3.9 Score=47.16 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=32.9
Q ss_pred ecccCCCCCCCce---EEEcCCCcccccccceeEEEeeccccCCCCeEeeccCCCC
Q 011301 269 IDFCNHDLKAAAT---WEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKG 321 (489)
Q Consensus 269 ~DmlNH~~~~~~~---~~~d~~g~~~g~~~~~~l~~~a~r~i~~GeEIfisYG~~s 321 (489)
+-+.||+.++||. |.++ |.. .+.+.|.|+|.+||||+..|.-++
T Consensus 1251 ~RfinhscKPNc~~qkwSVN--G~~-------Rv~L~A~rDi~kGEELtYDYN~ks 1297 (1306)
T KOG1083|consen 1251 ARFINHSCKPNCEMQKWSVN--GEY-------RVGLFALRDLPKGEELTYDYNFKS 1297 (1306)
T ss_pred ccccccccCCCCcccccccc--cee-------eeeeeecCCCCCCceEEEeccccc
Confidence 3467999998874 5554 432 356779999999999999997643
No 15
>PHA01735 hypothetical protein
Probab=37.77 E-value=39 Score=26.29 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=29.1
Q ss_pred CHHHHHHH-HHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcc
Q 011301 437 QEDEISKV-SSLLEELVGSGGERQPSDAEVRAAVWETCGDSG 477 (489)
Q Consensus 437 ~~~e~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 477 (489)
+++.+..+ ..+..|++.+--....|++|+|+|+ .|+-|++
T Consensus 6 ~ee~fs~LH~~lt~El~~RiksgeATtaDL~AA~-d~Lk~Nd 46 (76)
T PHA01735 6 TEEQFDELHQLLTNELLSRIKSGEATTADLRAAC-DWLKSND 46 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH-HHHHHCC
Confidence 56777776 5566677777778999999999986 4554443
No 16
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=29.51 E-value=71 Score=33.74 Aligned_cols=60 Identities=27% Similarity=0.373 Sum_probs=42.4
Q ss_pred ceeeeeeecccCCCCCCCceEEEcCCCcccccccceeEEEeeccccCCCC-eEeeccCC--CC----hHHHHHhCCc
Q 011301 262 IEGLVPGIDFCNHDLKAAATWEVDGTGLITGVPFSMYLLSVERSSFHSEK-EISISYGN--KG----NEELLYLYGF 331 (489)
Q Consensus 262 ~~~LvPl~DmlNH~~~~~~~~~~d~~g~~~g~~~~~~l~~~a~r~i~~Ge-EIfisYG~--~s----N~eLL~~YGF 331 (489)
..+|.|..=++||+..+|+...+++.+ ..+.....+.+++ +++++|-. .+ ...|-..|.|
T Consensus 199 ~~~l~~~~~~~~hsC~pn~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f 265 (482)
T KOG2084|consen 199 GRGLFPGSSLFNHSCFPNISVIFDGRG----------LALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLF 265 (482)
T ss_pred eeeecccchhcccCCCCCeEEEECCce----------eEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccce
Confidence 358889888999999999886665443 2344556677665 99999975 22 3556666666
No 17
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.49 E-value=7.7 Score=40.34 Aligned_cols=71 Identities=14% Similarity=0.022 Sum_probs=52.3
Q ss_pred ceeeeeeecccCCCCCC-C-ceEEEcCCCcccccccceeEEEeeccccCCCCeEeeccCCCChHHHHHhCC-cccC-CCC
Q 011301 262 IEGLVPGIDFCNHDLKA-A-ATWEVDGTGLITGVPFSMYLLSVERSSFHSEKEISISYGNKGNEELLYLYG-FVID-NNP 337 (489)
Q Consensus 262 ~~~LvPl~DmlNH~~~~-~-~~~~~d~~g~~~g~~~~~~l~~~a~r~i~~GeEIfisYG~~sN~eLL~~YG-Fv~~-~Np 337 (489)
..+|+|+++|.|-.... + +..-.|-.+. ..|++.|.| |.|..++|+.+.+.++...|| |+.. --|
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D~~~d---------~tm~~~R~i--l~ql~nt~teld~~e~~~syd~ftkkE~~p 337 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMDVPND---------DTMRNMRLI--LLQLHNTRTELDINEFHSSYDTFTKKEVKP 337 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhcCCCc---------chHHHHHHH--HHHhccchhhhhhHHHHHhhhhhhhccccc
Confidence 47999999999998653 2 3222222221 367778888 999999999999999999999 5544 478
Q ss_pred CceEEe
Q 011301 338 DDYLMI 343 (489)
Q Consensus 338 ~D~v~i 343 (489)
++.+-+
T Consensus 338 ~~g~lv 343 (466)
T KOG1338|consen 338 AIGKLV 343 (466)
T ss_pred cceeee
Confidence 887654
No 18
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=25.72 E-value=55 Score=34.55 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=28.8
Q ss_pred EEEeeccccCCCCeEeeccCCCChHHHHHhCC
Q 011301 299 LLSVERSSFHSEKEISISYGNKGNEELLYLYG 330 (489)
Q Consensus 299 l~~~a~r~i~~GeEIfisYG~~sN~eLL~~YG 330 (489)
+..++.|+|++|||+.+-||.--+.+|...+|
T Consensus 124 Ifyrt~r~I~p~eELlVWY~~e~~~~L~~~~~ 155 (396)
T KOG2461|consen 124 IFYRTIRDIRPNEELLVWYGSEYAEELAYGHG 155 (396)
T ss_pred eEEEecccCCCCCeEEEEeccchHhHhcccCC
Confidence 55678999999999999999988899988888
Done!