BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011303
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 78/116 (67%), Gaps = 4/116 (3%)
Query: 374 SQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRL 432
S V T +GL E++ G G A G+ VSV Y G L +G+ FDS+ R PF+F L
Sbjct: 97 STVVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFEFVL 153
Query: 433 GVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
G G VIKGWD GV GM+VG RRLTIPP +GYG GAGG IPPN+ LVF+VEL+DV
Sbjct: 154 GGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 77/116 (66%), Gaps = 4/116 (3%)
Query: 374 SQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRL 432
S V T +GL E++ G G A G+ VSV Y G L +G+ FDS+ R PF F L
Sbjct: 97 STVVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVL 153
Query: 433 GVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
G G VIKGWD GV GM+VG RRLTIPP +GYG GAGG IPPN+ LVF+VEL+DV
Sbjct: 154 GGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 77/116 (66%), Gaps = 4/116 (3%)
Query: 374 SQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRL 432
S + T +GL E++ G G A G+ VSV Y G L +G+ FDS+ R PF F L
Sbjct: 97 STIVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVL 153
Query: 433 GVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
G G VIKGWD GV GM+VG RRLTIPP +GYG GAGG IPPN+ LVF+VEL+DV
Sbjct: 154 GGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 77/116 (66%), Gaps = 4/116 (3%)
Query: 374 SQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRL 432
S V T +GL E++ G G A G+ VSV Y G L +G+ FDS+ R PF F L
Sbjct: 1 STVVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVL 57
Query: 433 GVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
G G VIKGWD GV GM+VG RRLTIPP +GYG GAGG IPPN+ LVF+VEL+DV
Sbjct: 58 GGGHVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 113
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 76/116 (65%), Gaps = 4/116 (3%)
Query: 374 SQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRL 432
S V T +GL E++ G G A G+ VSV Y G L +G+ FDS+ R PF F L
Sbjct: 97 STVVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVL 153
Query: 433 GVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
G G VIKGWD GV GM+VG RRLTIPP +GYG GA G IPPN+ LVF+VEL+DV
Sbjct: 154 GGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLDV 209
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 374 SQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLG 433
S V T +GL E++ G G A G+ VSV Y G L K S PF F LG
Sbjct: 97 STVVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLG 154
Query: 434 VGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
G VIKGWD GV GM+VG RRLTIPP +GYG GAGG IPPN+ LVF+VEL+DV
Sbjct: 155 GGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 209
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 77/117 (65%), Gaps = 4/117 (3%)
Query: 373 SSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFR 431
S V T +GL E++ G G A G+ VSV Y G L +G+ FDS+ R PF F
Sbjct: 4 SMTVVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFV 60
Query: 432 LGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
LG G VIKGWD GV GM+VG RRLTIPP +GYG GAGG IPPN+ LVF+VEL+DV
Sbjct: 61 LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 117
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 76/114 (66%), Gaps = 4/114 (3%)
Query: 376 VRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRLGV 434
V T +GL E++ G G A G+ VSV Y G L +G+ FDS+ R PF F LG
Sbjct: 23 VVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVLGG 79
Query: 435 GEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
G VIKGWD GV GM+VG RRLTIPP +GYG GAGG IPPN+ LVF+VEL+DV
Sbjct: 80 GMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV 133
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query: 367 VQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASP--GKQVSVRYIGKLKKNGKIFDSNVG 424
+ +E + +V +G VI+ + +G+ P G +V+V Y+GKL+ GK+FDS+
Sbjct: 1 MTTEQEFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD 60
Query: 425 R-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDV 483
R PFKF L GEVIKGWD+ V+ MR +K + I GYG EG G IP NS L+F++
Sbjct: 61 RNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEI 120
Query: 484 ELIDVR 489
EL+ R
Sbjct: 121 ELLSFR 126
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query: 367 VQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASP--GKQVSVRYIGKLKKNGKIFDSNVG 424
+ +E + +V +G VI+ + +G+ P G +V+V Y+GKL+ GK+FDS+
Sbjct: 1 MTTEQEFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD 60
Query: 425 R-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDV 483
R PFKF L GEVIKGWD+ V+ MR +K + I GYG EG G IP NS L+F++
Sbjct: 61 RNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEI 120
Query: 484 ELIDVR 489
EL+ R
Sbjct: 121 ELLSFR 126
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 375 QVRTFPNGLVIEEVAMGKPDGKRASP--GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFR 431
QV +G V++ + G+ +P G +V+V Y+GKL+ +GK+FDS+ R PFKF
Sbjct: 8 QVHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFH 67
Query: 432 LGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489
LG GEVIKGWD+ V M +K + + GYG EG G IP NS L+F++ELI R
Sbjct: 68 LGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISFR 125
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 73/129 (56%), Gaps = 15/129 (11%)
Query: 370 EAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRA-PF 428
E S + P+GL + +G G A G+ + Y+GKL+ NGK+FDS+ R P
Sbjct: 1 ETTSCEFSVSPSGLAFCDKVVGY--GPEAVKGQLIKAHYVGKLE-NGKVFDSSYNRGKPL 57
Query: 429 KFRLGVGEVIKGWDVGVNG------MRVGDKRRLTIPPSMGYGTEGAGGK-----IPPNS 477
FR+GVGEVIKGWD G+ G M G KR L IPP + YG GAG K IPP S
Sbjct: 58 TFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPAS 117
Query: 478 WLVFDVELI 486
L+FD+E I
Sbjct: 118 VLLFDIEYI 126
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 2/89 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G V++ Y G L+ NG+ FDS+V R +PF+ +GVG+VIKGWDVG+ + VG+K RLTIP
Sbjct: 25 GDLVTIHYTGTLE-NGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIP 83
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
YG G G IPPNS LVFDVEL+ V
Sbjct: 84 GPYAYGPRGFPGLIPPNSTLVFDVELLKV 112
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 77/116 (66%), Gaps = 4/116 (3%)
Query: 374 SQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRL 432
S V T +GL E++ G G A G+ VSV Y G L +G+ FDS+ R PF F L
Sbjct: 1 STVVTTESGLKYEDLTEGS--GAEARAGQTVSVHYTGWLT-DGQKFDSSKDRNDPFAFVL 57
Query: 433 GVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
G G VIKGWD GV GM+VG RRLTIPP +GYG GAGG IPPN+ LVF+VEL+DV
Sbjct: 58 GGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGAGGAGGVIPPNATLVFEVELLDV 113
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 89.7 bits (221), Expect = 3e-18, Method: Composition-based stats.
Identities = 46/98 (46%), Positives = 67/98 (68%), Gaps = 6/98 (6%)
Query: 396 KRASPGKQVSVRYIGKLKKNGKIFDS----NVGRAPFKFRLGVGEVIKGWDVGVNGMRVG 451
++ G + V Y G L+K+G +F S N G+ P F LG+ E +KGWD G+ GM VG
Sbjct: 27 RKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQ-PIWFTLGILEALKGWDQGLKGMCVG 85
Query: 452 DKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489
+KR+L IPP++GYG EG GKIPP S L+F+++L+++R
Sbjct: 86 EKRKLIIPPALGYGKEGK-GKIPPESTLIFNIDLLEIR 122
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
GK+V+V Y G+ +GK FDS+ R PF+F LG GEVIKGWD GV M +G+K TIP
Sbjct: 43 GKKVTVHYDGRFP-DGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIP 101
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
+ YG G IPP + LVF+VEL+ V
Sbjct: 102 YQLAYGERGYPPVIPPKATLVFEVELLAV 130
>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator
(Tcmip)
Length = 167
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 7/125 (5%)
Query: 367 VQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRA-SPGKQVSVRYIGKLKKNGKIFDSNVGR 425
++ +A P+GLV + +A G GKRA + + V Y G+L+ +G +FDS+ R
Sbjct: 23 MEQKAAQPDAVKLPSGLVFQRIARGS--GKRAPAIDDKCEVHYTGRLR-DGTVFDSSRER 79
Query: 426 A-PFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVE 484
P FR EVIKGW + MR GD+ RL IP + YG G GG IPP S L FDVE
Sbjct: 80 GKPTTFR--PNEVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVE 137
Query: 485 LIDVR 489
LI ++
Sbjct: 138 LISIK 142
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 83.2 bits (204), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G+ V Y G L +GK+FDS+ R PF+F +G GEVI+GWD GV M VG + +L
Sbjct: 20 GQVAVVHYTGTLA-DGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLVCS 78
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
P YG+ G G IPPN+ L FDVEL+ V
Sbjct: 79 PDYAYGSRGHPGVIPPNATLTFDVELLRV 107
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 69/110 (62%), Gaps = 7/110 (6%)
Query: 382 GLVIEEVAMGKPDGKRASP--GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVI 438
G+ IE ++ G DG R P G+ V Y G L+ NGK FDS+ R PFKFR+G EVI
Sbjct: 1 GVEIETISPG--DG-RTFPKKGQTCVVHYTGMLQ-NGKKFDSSRDRNKPFKFRIGKQEVI 56
Query: 439 KGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
KG++ G M +G + +LT P + YG G G IPPN+ L+FDVEL+++
Sbjct: 57 KGFEEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNL 106
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 68/110 (61%), Gaps = 7/110 (6%)
Query: 382 GLVIEEVAMGKPDGKRASP--GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVI 438
G+ +E ++ G DG R P G+ V Y G L+ +GK FDS+ R PFKF LG EVI
Sbjct: 1 GVQVETISPG--DG-RTFPKRGQTCVVHYTGMLE-DGKKFDSSRDRNKPFKFVLGKQEVI 56
Query: 439 KGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
+GW+ GV M VG + +LTI P YG G G IPPN+ L+FDVEL+ +
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPNATLIFDVELLKL 106
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 382 GLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKG 440
G+ +E ++ G DG+ Q V + + ++GK FDS+ R PFKF LG EVI+G
Sbjct: 1 GVQVETISPG--DGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 58
Query: 441 WDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
W+ GV M VG + +LTI P YG G G IPP++ LVFDVEL+ +
Sbjct: 59 WEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 68/110 (61%), Gaps = 7/110 (6%)
Query: 382 GLVIEEVAMGKPDGKRASP--GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVI 438
G+ +E ++ G DG R P G+ V Y G L+ +GK FDS+ R PFKF LG EVI
Sbjct: 3 GVQVETISPG--DG-RTFPKRGQTCVVHYTGMLE-DGKKFDSSRDRNKPFKFMLGKQEVI 58
Query: 439 KGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
+GW+ GV M VG + +LTI P YG G G IPP++ LVFDVEL+ +
Sbjct: 59 RGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 108
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 68/110 (61%), Gaps = 7/110 (6%)
Query: 382 GLVIEEVAMGKPDGKRASP--GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVI 438
G+ +E ++ G DG R P G+ V Y G L+ +GK FDS+ R PFKF LG EVI
Sbjct: 1 GVQVETISPG--DG-RTFPKRGQTCVVHYTGMLE-DGKKFDSSRDRNKPFKFMLGKQEVI 56
Query: 439 KGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
+GW+ GV M VG + +LTI P YG G G IPP++ LVFDVEL+ +
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G+ V Y G L+ +GK FDS+ R PFKF LG EVI+GW+ GV M VG + +LTI
Sbjct: 19 GQTCVVHYTGMLE-DGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTIS 77
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
P YG G G IPP++ LVFDVEL+ +
Sbjct: 78 PDYAYGATGHPGIIPPHATLVFDVELLKL 106
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G +V V Y GKL NGK FDS+ R PF F LG G+VIK WD+GV M+ G+ L
Sbjct: 50 GDKVYVHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK 108
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489
P YG+ G+ KIP N+ L F++EL+D +
Sbjct: 109 PEYAYGSAGSLPKIPSNATLFFEIELLDFK 138
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Query: 382 GLVIEEVAMGKPDGKRASP--GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVI 438
G+ +E ++ G DG R P G+ V Y G L+ +GK FDS+ R PFKF LG EVI
Sbjct: 1 GVQVETISPG--DG-RTFPKRGQTCVVHYTGMLE-DGKKFDSSRDRNKPFKFMLGKQEVI 56
Query: 439 KGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
+GW GV M VG + +LTI P YG G G IPP++ LVFDVEL+ +
Sbjct: 57 RGWQEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
Query: 397 RASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRR 455
++ G + + Y GKL+ +G FDS++ + PF F LG G+VIKGWD G+ GM G+KR+
Sbjct: 5 KSRKGDVLHMHYTGKLE-DGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRK 63
Query: 456 LTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
L IP +GYG GA KIP + LVF+VEL+ +
Sbjct: 64 LVIPSELGYGERGAPPKIPGGATLVFEVELLKI 96
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Query: 382 GLVIEEVAMGKPDGKRASP--GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVI 438
G+ +E ++ G DG R P G+ V Y G L+ +GK FDS+ R PFKF LG EVI
Sbjct: 1 GVQVETISPG--DG-RTFPKRGQTCVVHYTGMLE-DGKKFDSSRDRNKPFKFMLGKQEVI 56
Query: 439 KGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
+GW GV M VG + +LTI P YG G G IPP++ LVFDVEL+ +
Sbjct: 57 RGWAEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 68/110 (61%), Gaps = 7/110 (6%)
Query: 382 GLVIEEVAMGKPDGKRASP--GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVI 438
G+ +E ++ G DG R P G+ V Y G L+ +GK FDS+ + PFKF LG EVI
Sbjct: 1 GVQVETISPG--DG-RTFPKRGQTCVVHYTGMLE-DGKKFDSSRDKNKPFKFMLGKQEVI 56
Query: 439 KGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
+GW+ GV M VG + +LTI P YG G G IPP++ LVFDVEL+ +
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYAYGATGVPGIIPPHATLVFDVELLKL 106
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G +V V Y G L +G FDS++ R F F LG GEVIK WD+ V M+VG+ R+T
Sbjct: 49 GDRVFVHYTGWLL-DGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCRITCK 107
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489
P YG+ G+ KIPPN+ LVF+VEL + +
Sbjct: 108 PEYAYGSAGSPPKIPPNATLVFEVELFEFK 137
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G +V V Y GKL NGK FDS+ R PF F LG G+VIK WD+GV M+ G+ L
Sbjct: 54 GDKVYVHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK 112
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489
P YG+ G+ KIP N+ L F++EL+D +
Sbjct: 113 PEYAYGSAGSLPKIPSNATLFFEIELLDFK 142
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G +V V Y GKL NGK FDS+ R PF F +G G+VIK WD+GV M+ G+ L
Sbjct: 50 GDRVYVHYNGKLA-NGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCK 108
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489
P YG G+ KIP N+ L F+VEL+D +
Sbjct: 109 PEYAYGATGSLPKIPSNATLFFEVELLDFK 138
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G +V V Y G L +GK FDS+ R FKF+LG G+VIKGWD G+ M+ G+ TIP
Sbjct: 30 GDEVEVHYTGTLL-DGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIP 88
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELI 486
P + YG G+ IP N+ L FDVEL+
Sbjct: 89 PELAYGESGSPPTIPANATLQFDVELL 115
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 396 KRASPGKQVSVRYIGKLKKNGKIF--DSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDK 453
+R + G V+V+ GKL+ +G +F + + PF+F+ VI+G D V M+ G+
Sbjct: 258 ERPNEGAVVTVKITGKLQ-DGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEV 316
Query: 454 RRLTIPPSMGYGTEGA--GGKIPPNSWLVFDVELI 486
+TIPP YG+ + +PPNS ++++VEL+
Sbjct: 317 ALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELV 351
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 403 QVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSM 462
+V V+Y +L+ +G + + G +F + G + V M+ G+K L + P
Sbjct: 148 EVFVKYEARLE-DGTVVSKSEG---VEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQY 203
Query: 463 GYG-----TEGAGGKIPPNSWLVFDVELI 486
G+G G GG +PPN+ LV D+EL+
Sbjct: 204 GFGEMGRPAAGEGGAVPPNASLVIDLELV 232
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G +V V Y GKL NGK FDS+ R PF F LG G+VIK WD+GV M+ G+ L
Sbjct: 54 GDKVYVHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK 112
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489
P YG+ G+ KIP N+ L F++EL+D +
Sbjct: 113 PEYAYGSAGSLPKIPSNATLFFEIELLDFK 142
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G +V V Y G L +GK FDS+ R FKF+LG G+VIKGWD G+ M+ G+ TIP
Sbjct: 46 GDEVEVHYTGTLL-DGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIP 104
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELI 486
P + YG G+ IP N+ L FDVEL+
Sbjct: 105 PELAYGESGSPPTIPANATLQFDVELL 131
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 396 KRASPGKQVSVRYIGKLKKNGKIF--DSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDK 453
+R + G V+V+ GKL+ +G +F + + PF+F+ VI+G D V M+ G+
Sbjct: 274 ERPNEGAVVTVKITGKLQ-DGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEV 332
Query: 454 RRLTIPPSMGYGTEGA--GGKIPPNSWLVFDVELI 486
+TIPP YG+ + +PPNS ++++VEL+
Sbjct: 333 ALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELV 367
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 403 QVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSM 462
+V V+Y +L+ +G + + G +F + G + V M+ G+K L + P
Sbjct: 164 EVFVKYEARLE-DGTVVSKSEG---VEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQY 219
Query: 463 GYG-----TEGAGGKIPPNSWLVFDVELI 486
G+G G GG +PPN+ LV D+EL+
Sbjct: 220 GFGEMGRPAAGEGGAVPPNASLVIDLELV 248
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Query: 382 GLVIEEVAMGKPDGKRASP--GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVI 438
G+ +E ++ G DG R P G+ V Y G L+ +GK DS+ R PFKF LG EVI
Sbjct: 1 GVQVETISPG--DG-RTFPKRGQTCVVHYTGMLE-DGKKMDSSRDRNKPFKFMLGKQEVI 56
Query: 439 KGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
+GW+ GV M VG + +LTI P YG G G IPP++ LVFDVEL+ +
Sbjct: 57 RGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G +V V Y GKL NGK FDS+ R PF F LG G+VIK WD+GV M+ G+ L
Sbjct: 54 GDKVYVHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK 112
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489
P YG+ G+ KIP N+ L F++EL+D +
Sbjct: 113 PEYAYGSAGSLPKIPSNATLFFEIELLDFK 142
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 68/110 (61%), Gaps = 7/110 (6%)
Query: 382 GLVIEEVAMGKPDGKRASP--GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVI 438
G+ +E ++ G DG R P G+ V Y G L+ +GK FDS+ R PFKF LG EVI
Sbjct: 1 GVQVETISPG--DG-RTFPKRGQTCVVHYTGMLE-DGKKFDSSRDRNKPFKFMLGKQEVI 56
Query: 439 KGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
+G++ GV M VG + +LTI P YG G G IPP++ LVFDVEL+ +
Sbjct: 57 RGFEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 63/109 (57%), Gaps = 5/109 (4%)
Query: 382 GLVIEEVAMGKPDGKRASP--GKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIK 439
G+ +E ++ G DG R P G+ V Y G L+ K+ S PFKF LG EVI+
Sbjct: 1 GVQVETISPG--DG-RTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIR 57
Query: 440 GWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
GW+ GV M VG + +LTI P YG G G IPP++ LVFDVEL+ +
Sbjct: 58 GWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G +V V Y GKL NGK FDS+ R PF F LG G+VIK WD+GV M+ G+ L
Sbjct: 38 GDKVYVHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK 96
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489
P YG+ G+ KIP N+ L F++EL+D +
Sbjct: 97 PEYAYGSAGSLPKIPSNATLFFEIELLDFK 126
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G +V V Y GKL NGK FDS+ R PF F LG G+VIK WD+GV M+ G+ L
Sbjct: 38 GDKVYVHYKGKLS-NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK 96
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489
P YG+ G+ KIP N+ L F++EL+D +
Sbjct: 97 PEYAYGSAGSLPKIPSNATLFFEIELLDFK 126
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G +V V Y G L +G FDS++ R F F LG GEVIK WD+ + M+VG+ +T
Sbjct: 50 GDRVFVHYTGWLL-DGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK 108
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489
P YG+ G+ KIPPN+ LVF+VEL + +
Sbjct: 109 PEYAYGSAGSPPKIPPNATLVFEVELFEFK 138
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Query: 382 GLVIEEVAMGKPDGKRASP--GKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVI 438
G+ +E ++ G DG R P G+ V Y G L+ +GK FDS+ R PFKF LG EVI
Sbjct: 1 GVQVETISPG--DG-RTFPKRGQTCVVHYTGMLE-DGKKFDSSRDRNKPFKFMLGKQEVI 56
Query: 439 KGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
+G + GV M VG + +LTI P YG G G IPP++ LVFDVEL+ +
Sbjct: 57 RGLEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G +V V Y G L +G FDS++ R F F LG GEVIK WD+ + M+VG+ +T
Sbjct: 70 GDRVFVHYTGWLL-DGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK 128
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489
P YG+ G+ KIPPN+ LVF+VEL + +
Sbjct: 129 PEYAYGSAGSPPKIPPNATLVFEVELFEFK 158
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459
G +V V Y G L +G FDS++ R F F LG GEVIK WD+ + M+VG+ +T
Sbjct: 54 GDRVFVHYTGWLL-DGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK 112
Query: 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489
P YG+ G+ KIPPN+ LVF+VEL + +
Sbjct: 113 PEYAYGSAGSPPKIPPNATLVFEVELFEFK 142
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 376 VRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVG 435
V+ +G+++ E+ G G + +V VRY+G+L +GKIFD + P FRL
Sbjct: 112 VKELADGILMTELTPGT--GPKPDANGRVEVRYVGRLP-DGKIFDQST--QPQWFRLD-- 164
Query: 436 EVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDV 488
VI GW + M G K RL IP YG EGAG I P + LVF++ELI V
Sbjct: 165 SVISGWTSALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIAV 217
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 361 ASATEQVQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFD 420
A E + AK V+T GLV + V GK + + S V V Y G L +GK FD
Sbjct: 101 AKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEAPKDS--DTVVVNYKGTLI-DGKEFD 157
Query: 421 SNVGRA-PFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWL 479
++ R P FRL VI GW G+ ++ G K +L IPP + YG G G IPPNS L
Sbjct: 158 NSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTL 214
Query: 480 VFDVELIDVR 489
VFDVEL+DV+
Sbjct: 215 VFDVELLDVK 224
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 10/97 (10%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGRA--------PFKFRLGVGEVIKGWDVGVNGMRVGD 452
G V Y G L+ +G +FD+N+ + P F++GVG+VI+GWD + M G+
Sbjct: 20 GDVVHCWYTGTLQ-DGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE 78
Query: 453 KRRLTIPPSMGYGTEGA-GGKIPPNSWLVFDVELIDV 488
K RL I P YG +G KIPPN+ L F+VEL+D+
Sbjct: 79 KARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI 115
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 361 ASATEQVQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFD 420
A E + AK V+T GLV + V GK + + S V V Y G L +GK FD
Sbjct: 101 AKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEAPKDS--DTVVVNYKGTLI-DGKEFD 157
Query: 421 SNVGRA-PFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWL 479
++ R P FRL VI GW G+ ++ G K +L IPP + YG G G IPPNS L
Sbjct: 158 NSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTL 214
Query: 480 VFDVELIDVR 489
VFDVEL+DV+
Sbjct: 215 VFDVELLDVK 224
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 10/97 (10%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGRA--------PFKFRLGVGEVIKGWDVGVNGMRVGD 452
G V Y G L +G +FD+N+ + P F++GVG+VI+GWD + M G+
Sbjct: 23 GDVVHCWYTGTLP-DGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE 81
Query: 453 KRRLTIPPSMGYGTEG-AGGKIPPNSWLVFDVELIDV 488
K RL I P YG +G KIPPN+ L+F+VEL+D+
Sbjct: 82 KARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 397 RASPGKQVSVRYIGKLKKNGKIFDSNVGRA-PFKFRLGVGEVIKGWDVGVNGMRVGDKRR 455
+ + G V V Y+G L+ NG FDS+ R F F LG G VIKGWD+GV M G+
Sbjct: 29 KPTTGTTVKVHYVGTLE-NGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAE 87
Query: 456 LTIPPSMGYGTEGAGGKIPPNSWLVFDVELID 487
TI GYG G+ KIP + L+F+VEL +
Sbjct: 88 FTIRSDYGYGDAGSPPKIPGGATLIFEVELFE 119
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 395 GKRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDK 453
G +P V V+Y G L+ + FDSN R P +LG + G ++G+ MR G+
Sbjct: 38 GDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGEL 97
Query: 454 RRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELID 487
R P+ YGT G IPPN+ ++F++EL+D
Sbjct: 98 ARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLD 131
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 376 VRTFPNGLVIEEVAMGKPDGKRASPGKQ--VSVRYIGKLKKNGKIFDSN--VGRAPFKFR 431
V P+GL + + G PGK V+V Y G+L +G +FDS G+ P F+
Sbjct: 101 VVVLPSGLQYKVIN----SGNGVKPGKSDTVTVEYTGRLI-DGTVFDSTEKTGK-PATFQ 154
Query: 432 LGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489
V +VI GW + M G + +P + YG GG I PN L+F + LI V+
Sbjct: 155 --VSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVK 210
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 376 VRTFPNGLVIEEVAMGKPDGKRASPGKQ--VSVRYIGKLKKNGKIFDSN--VGRAPFKFR 431
V P+GL + + G PGK V+V Y G+L +G +FDS G+ P F+
Sbjct: 25 VVVLPSGLQYKVIN----SGNGVKPGKSDTVTVEYTGRLI-DGTVFDSTEKTGK-PATFQ 78
Query: 432 LGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489
V +VI GW + M G + +P + YG GG I PN L+F + LI V+
Sbjct: 79 --VSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVK 134
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSNVGRA--------------PFKFRLGVGEVIKGWDVGVN 446
G ++ V YIGKL+ +G +FD+++ P +F +G G++I+G++ V
Sbjct: 5 GVKIKVDYIGKLE-SGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVL 63
Query: 447 GMRVGDKRRLTIPPSMGYG--TEGAGGKIPPNSW 478
M VGD++ + IP YG E KIP +++
Sbjct: 64 DMEVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAF 97
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 381 NGLVIEEVAM-GKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIK 439
NGL+ ++ + G P R G+ V+V L+ ++ + F LG +VI+
Sbjct: 12 NGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE----EPELVFTLGDCDVIQ 67
Query: 440 GWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVEL 485
D+ V M VG+ +T YG +G IPP++ L +V L
Sbjct: 68 ALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTL 113
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 418 IFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGT 466
+ DSN+ + P +F +G ++I G + V ++G+ + I P YG
Sbjct: 27 VLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGV 75
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 381 NGLVIEEVAM-GKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIK 439
NGL+ ++ + G P R G+ V+V L+ ++ + F LG +VI+
Sbjct: 10 NGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE----EPELVFTLGDCDVIQ 65
Query: 440 GWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVEL 485
D+ V M VG+ +T YG +G IPP++ L +V L
Sbjct: 66 ALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTL 111
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 381 NGLVIEEVAM-GKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIK 439
NGL+ ++ + G P R G+ V+V L+ ++ + F LG +VI+
Sbjct: 16 NGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE----EPELVFTLGDCDVIQ 71
Query: 440 GWDVGVNGMRVGDKRRLTIPPSMGYGTEGA-GGKIPPNSWLVFDVEL 485
D+ V M VG+ +T YG +G+ IPP++ L +V L
Sbjct: 72 ALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 118
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSN--------------VGRAPFKFRLGVGEVIKGWDVGVN 446
GK V + Y G + +GK+FD+ + P G G+V+ G D +
Sbjct: 5 GKMVKISYDGYV--DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAIL 62
Query: 447 GMRVGDKRRLTIPPSMGYG 465
M VG++R + +PP +G
Sbjct: 63 EMDVGEEREVVLPPEKAFG 81
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 381 NGLVIEEVAM-GKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIK 439
NGL+ ++ + G P R G+ V+V L+ ++ + F LG +VI+
Sbjct: 42 NGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE----EPELVFTLGDCDVIQ 97
Query: 440 GWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGK-IPPNSWLVFDVEL 485
D+ V M VG+ +T YG +G+ IPP++ L +V L
Sbjct: 98 ALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 144
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
Query: 401 GKQVSVRYIGKLKKNGKIFDSN--------------VGRAPFKFRLGVGEVIKGWDVGVN 446
GK V + Y G + +GK+FD+ + P G G+V+ G D +
Sbjct: 5 GKMVKISYDGYV--DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAIL 62
Query: 447 GMRVGDKRRLTIPPSMGYG 465
M VG++R + +PP +G
Sbjct: 63 EMDVGEEREVVLPPEKAFG 81
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 438 IKGWDVGVNGMRVGDKRRLTIPPSMGYGTEG--AGGKIPPNSWLVFDVELI 486
+ G +GV M+ G++ + + + YG EG + +PP + L+++VE+I
Sbjct: 106 LAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVI 156
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 438 IKGWDVGVNGMRVGDKRRLTIPPSMGYGTEG--AGGKIPPNSWLVFDVELI 486
+ G +GV M+ G++ + + + YG EG + +PP + L+++VE+I
Sbjct: 106 LAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVI 156
>pdb|2K8I|A Chain A, Solution Structure Of E.Coli Slyd
Length = 171
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 414 KNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGT--EGAGG 471
++G + D + AP + G G +I G + + G VGDK + + + YG E
Sbjct: 18 EDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLVQ 77
Query: 472 KIPPNSWLVFD 482
++P + ++ D
Sbjct: 78 RVPKDVFMGVD 88
>pdb|2KFW|A Chain A, Solution Structure Of Full-Length Slyd From E.Coli
Length = 196
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 414 KNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGT--EGAGG 471
++G + D + AP + G G +I G + + G VGDK + + + YG E
Sbjct: 18 EDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENLVQ 77
Query: 472 KIPPNSWLVFD 482
++P + ++ D
Sbjct: 78 RVPKDVFMGVD 88
>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The
Chaperone Binding Site Occupied By The Linker Of The
Purification Tag
Length = 169
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 427 PFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGT 466
P FRLG + +G + + G++VGDK ++ P +G
Sbjct: 54 PALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGV 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,934,782
Number of Sequences: 62578
Number of extensions: 475860
Number of successful extensions: 877
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 72
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (25.0 bits)