Query 011303
Match_columns 489
No_of_seqs 325 out of 1665
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 23:51:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 99.9 8.8E-27 1.9E-31 220.2 13.5 119 366-489 86-205 (205)
2 PF03066 Nucleoplasmin: Nucleo 99.9 1.1E-26 2.4E-31 213.0 12.5 98 2-100 5-111 (149)
3 KOG0544 FKBP-type peptidyl-pro 99.9 4.9E-25 1.1E-29 183.3 12.2 105 382-489 2-108 (108)
4 KOG0552 FKBP-type peptidyl-pro 99.9 1.7E-24 3.7E-29 209.0 13.3 112 375-489 114-226 (226)
5 PRK11570 peptidyl-prolyl cis-t 99.9 7.4E-23 1.6E-27 197.4 14.6 119 366-489 87-206 (206)
6 KOG0549 FKBP-type peptidyl-pro 99.9 1.2E-22 2.6E-27 188.5 13.5 110 379-489 66-176 (188)
7 TIGR03516 ppisom_GldI peptidyl 99.9 3.1E-22 6.7E-27 188.8 14.0 115 374-489 62-176 (177)
8 PRK10902 FKBP-type peptidyl-pr 99.8 2.1E-20 4.6E-25 186.8 14.7 117 367-489 132-249 (269)
9 PF00254 FKBP_C: FKBP-type pep 99.8 2.5E-18 5.3E-23 144.9 10.9 90 396-486 3-94 (94)
10 PRK15095 FKBP-type peptidyl-pr 99.6 1.3E-14 2.7E-19 134.6 9.5 72 396-468 3-75 (156)
11 KOG0543 FKBP-type peptidyl-pro 99.5 5.1E-14 1.1E-18 145.5 13.3 105 380-488 83-189 (397)
12 COG1047 SlpA FKBP-type peptidy 99.5 1.8E-13 4E-18 127.7 10.1 72 396-468 1-73 (174)
13 PRK10737 FKBP-type peptidyl-pr 99.5 1.6E-13 3.6E-18 131.2 9.6 72 396-468 1-72 (196)
14 TIGR00115 tig trigger factor. 98.8 3.9E-08 8.4E-13 104.2 11.4 86 396-489 145-230 (408)
15 KOG0543 FKBP-type peptidyl-pro 98.8 1.5E-08 3.2E-13 105.4 7.3 78 395-487 6-83 (397)
16 PRK01490 tig trigger factor; P 98.7 1.1E-07 2.3E-12 101.8 11.5 86 396-489 156-241 (435)
17 COG0544 Tig FKBP-type peptidyl 98.4 7.5E-07 1.6E-11 95.4 9.2 84 398-489 158-241 (441)
18 KOG0545 Aryl-hydrocarbon recep 97.6 8.4E-06 1.8E-10 80.4 -0.7 82 379-460 8-91 (329)
19 KOG0549 FKBP-type peptidyl-pro 96.5 0.0016 3.5E-08 61.6 2.7 41 430-470 1-41 (188)
20 PF10446 DUF2457: Protein of u 85.2 0.48 1E-05 50.7 1.9 8 426-433 387-394 (458)
21 PF06524 NOA36: NOA36 protein; 77.7 2.1 4.6E-05 42.9 3.3 7 89-95 232-238 (314)
22 PF10446 DUF2457: Protein of u 71.9 3.6 7.7E-05 44.3 3.4 6 437-442 391-396 (458)
23 PF02724 CDC45: CDC45-like pro 70.8 3 6.5E-05 47.2 2.7 19 76-94 74-93 (622)
24 PF06524 NOA36: NOA36 protein; 66.4 5.5 0.00012 40.1 3.2 11 63-73 212-222 (314)
25 KOG4264 Nucleo-cytoplasmic pro 59.9 8.1 0.00018 42.4 3.2 14 85-98 54-67 (694)
26 KOG3064 RNA-binding nuclear pr 59.9 6 0.00013 39.7 2.1 11 38-48 57-67 (303)
27 PF04147 Nop14: Nop14-like fam 49.1 13 0.00028 43.7 2.9 16 397-412 537-552 (840)
28 PF01346 FKBP_N: Domain amino 44.2 18 0.0004 31.6 2.5 22 366-387 103-124 (124)
29 KOG0943 Predicted ubiquitin-pr 42.8 19 0.00041 43.4 2.9 8 89-96 1707-1714(3015)
30 PRK00226 greA transcription el 41.5 62 0.0013 29.9 5.7 25 436-460 121-145 (157)
31 PF03115 Astro_capsid: Astrovi 38.9 16 0.00036 42.4 1.7 6 77-82 635-640 (787)
32 KOG1189 Global transcriptional 37.1 26 0.00056 40.3 2.8 8 68-75 835-842 (960)
33 TIGR01461 greB transcription e 36.8 1.1E+02 0.0023 28.5 6.5 24 437-460 119-142 (156)
34 KOG0526 Nucleosome-binding fac 33.1 1.6E+02 0.0034 32.9 7.7 32 52-83 375-411 (615)
35 PF02724 CDC45: CDC45-like pro 31.5 35 0.00077 38.7 2.8 11 381-391 498-508 (622)
36 PRK01885 greB transcription el 27.4 1.7E+02 0.0036 27.3 6.1 24 437-460 121-144 (157)
37 KOG1991 Nuclear transport rece 26.5 42 0.00092 39.7 2.3 50 98-147 885-949 (1010)
38 PRK05892 nucleoside diphosphat 26.4 1.3E+02 0.0028 28.1 5.2 25 436-460 120-144 (158)
39 KOG1999 RNA polymerase II tran 26.0 42 0.00091 39.6 2.1 9 398-406 408-416 (1024)
40 TIGR01462 greA transcription e 25.1 81 0.0018 29.0 3.5 25 436-460 116-140 (151)
41 KOG3064 RNA-binding nuclear pr 24.7 45 0.00097 33.7 1.8 6 26-31 33-38 (303)
42 KOG2141 Protein involved in hi 23.9 89 0.0019 36.0 4.1 26 427-452 624-649 (822)
43 KOG2023 Nuclear transport rece 21.0 30 0.00065 39.4 -0.2 7 87-93 302-308 (885)
44 PRK05753 nucleoside diphosphat 20.3 3.3E+02 0.0071 24.7 6.4 25 436-460 90-114 (137)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.8e-27 Score=220.21 Aligned_cols=119 Identities=50% Similarity=0.914 Sum_probs=112.1
Q ss_pred hhhhhhcCCCeEECCCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEeeCCeEEeccCCC-CCeEEEcCccccccchHHH
Q 011303 366 QVQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVG 444 (489)
Q Consensus 366 ~~~~~~~~~~~~~~~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~g~~~~dG~v~dst~~~-~p~~f~lG~g~li~Gleea 444 (489)
..+.+++...+.++++||.|++++.| .|..|..++.|++||+|++ .||++||+++.+ .|+.|.|| .+|+||.+|
T Consensus 86 f~~~~~k~~~v~~~~sgl~y~~~~~G--~G~~~~~~~~V~vhY~G~l-~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~eg 160 (205)
T COG0545 86 FLEKNAKEKGVKTLPSGLQYKVLKAG--DGAAPKKGDTVTVHYTGTL-IDGTVFDSSYDRGQPAEFPLG--GVIPGWDEG 160 (205)
T ss_pred HHhhhcccCCceECCCCcEEEEEecc--CCCCCCCCCEEEEEEEEec-CCCCccccccccCCCceeecC--CeeehHHHH
Confidence 34567778899999999999999999 7999999999999999999 899999999887 89999997 999999999
Q ss_pred hcCCccCcEEEEEECCCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011303 445 VNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489 (489)
Q Consensus 445 L~gMkvGek~~i~IPp~laYG~~g~~~~IPp~s~LvfeVeLl~Vk 489 (489)
|.+|++|++|+|+|||.+|||..|.+..||||++|+|+|+|++|+
T Consensus 161 l~~M~vG~k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 161 LQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred HhhCCCCceEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 999999999999999999999999777799999999999999985
No 2
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=99.94 E-value=1.1e-26 Score=212.97 Aligned_cols=98 Identities=23% Similarity=0.354 Sum_probs=79.3
Q ss_pred ceEEEEEcCCC-ceeeec-CCCCC--eEEEEEEEeCCCCCCCeEEEEEEe----CCCcceEEEeeCCCCccceeceeeeC
Q 011303 2 GFWGIEVKPGK-AHPYHS-DNVPG--KLHVTQATLGLGSSTEKSILQCSV----GDRSPIFLCSLLPNKNESCPLKLEFD 73 (489)
Q Consensus 2 ~FwG~eVkpgk-~~~~~~-~~~~~--~LhLsqa~Lg~~~~~e~~~v~~~v----~~~~~~~L~tL~~~~~eq~~LdL~F~ 73 (489)
+||||+|++++ .|+|.+ +++.. +|||+|||||+++++++++|++.. +...+|+||||.+++++||+|++.|
T Consensus 5 ~~wGceL~~~k~~~~f~~~~~d~~~h~L~L~~v~Lga~AKdE~~vVe~e~~~~eg~~~kv~lAtLk~s~~~~vsL~~~~- 83 (149)
T PF03066_consen 5 YFWGCELKADKKDYTFKVDDNDENEHQLSLRQVCLGAGAKDELNVVEVEAMNYEGKPIKVPLATLKMSVQPMVSLDGFE- 83 (149)
T ss_dssp EEEEEEEBSTB-EEEE-TTSSSSSCEEEEEEEEEE-TTS-SSEEEEEEEEEBTTSCEEEEEEEEEBTTTBSEEEEEEEE-
T ss_pred EEEEEEEcCCCceEEEeCCCCCCcccEEEEEEeecCCCccCceeEEEEEeccCCCCeeEEEEEEecCCccceEEcCCcc-
Confidence 79999999997 899999 33332 999999999999999999999987 2335899999999999999999755
Q ss_pred CCCcEEEEE-ecCccEEEeeeeeccCCC
Q 011303 74 EDDVVVFSV-KGPQSIHLAGYFEAESGD 100 (489)
Q Consensus 74 ~~~~V~f~v-~G~~~VHlsGy~~~~~~~ 100 (489)
.+.+|+|+| .|+|||||||||++...+
T Consensus 84 ~~ppVtf~L~~GsGPVhisG~~~~~~~~ 111 (149)
T PF03066_consen 84 ITPPVTFRLKCGSGPVHISGQHLVAMEE 111 (149)
T ss_dssp ESSSEEEEEEESSS-EEEEEEEEEE---
T ss_pred cCCCEEEEEEecCCCEEeeCcccccccc
Confidence 455899997 799999999999877644
No 3
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.9e-25 Score=183.26 Aligned_cols=105 Identities=52% Similarity=0.939 Sum_probs=100.6
Q ss_pred ceEEEEEEcCCCCC-CCCCCCCeEEEEEEEEEeeCCeEEeccCCC-CCeEEEcCccccccchHHHhcCCccCcEEEEEEC
Q 011303 382 GLVIEEVAMGKPDG-KRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIP 459 (489)
Q Consensus 382 Gl~~~il~~G~~~G-~~~~~Gd~V~i~Y~g~~~~dG~v~dst~~~-~p~~f~lG~g~li~GleeaL~gMkvGek~~i~IP 459 (489)
|+.+++|..| +| ..+..|+.|++||++.+ .||+.|||+..+ .||.|.||.+.+|.||++++..|.+|++++++|+
T Consensus 2 Gv~~~~i~~G--dg~tfpK~Gqtvt~hYtg~L-~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~ 78 (108)
T KOG0544|consen 2 GVEKQVISPG--DGRTFPKKGQTVTVHYTGTL-QDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTIS 78 (108)
T ss_pred CceeEEeeCC--CCcccCCCCCEEEEEEEeEe-cCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeec
Confidence 6889999999 66 78999999999999999 899999999987 8999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011303 460 PSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489 (489)
Q Consensus 460 p~laYG~~g~~~~IPp~s~LvfeVeLl~Vk 489 (489)
|.+|||..|.+..||||++|+|+||||+|.
T Consensus 79 pd~aYG~~G~p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 79 PDYAYGPRGHPGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred cccccCCCCCCCccCCCcEEEEEEEEEecC
Confidence 999999999999999999999999999874
No 4
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.7e-24 Score=208.95 Aligned_cols=112 Identities=66% Similarity=1.157 Sum_probs=107.1
Q ss_pred CeEECCCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEeeCCeEEeccCCCCCeE-EEcCccccccchHHHhcCCccCcE
Q 011303 375 QVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFK-FRLGVGEVIKGWDVGVNGMRVGDK 453 (489)
Q Consensus 375 ~~~~~~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~g~~~~dG~v~dst~~~~p~~-f~lG~g~li~GleeaL~gMkvGek 453 (489)
..+++++||+|+.++.| +|..+..|+.|.|||.+++..+|++|++++...|+. |+||.+.+|+||+.+|.||++|++
T Consensus 114 ~~~tl~~Gl~y~D~~vG--~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGk 191 (226)
T KOG0552|consen 114 KSRTLPGGLRYEDLRVG--SGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGK 191 (226)
T ss_pred cceecCCCcEEEEEEec--CCCCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCe
Confidence 33899999999999999 699999999999999999955999999999999999 999999999999999999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011303 454 RRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489 (489)
Q Consensus 454 ~~i~IPp~laYG~~g~~~~IPp~s~LvfeVeLl~Vk 489 (489)
|+|+|||+||||..+.+. ||||+||+|+|+|+.|+
T Consensus 192 RrviIPp~lgYg~~g~~~-IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 192 RRVIIPPELGYGKKGVPE-IPPNSTLVFDVELLSVK 226 (226)
T ss_pred eEEEeCccccccccCcCc-CCCCCcEEEEEEEEecC
Confidence 999999999999999997 99999999999999985
No 5
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.89 E-value=7.4e-23 Score=197.38 Aligned_cols=119 Identities=40% Similarity=0.693 Sum_probs=110.6
Q ss_pred hhhhhhcCCCeEECCCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEeeCCeEEeccCCC-CCeEEEcCccccccchHHH
Q 011303 366 QVQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVG 444 (489)
Q Consensus 366 ~~~~~~~~~~~~~~~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~g~~~~dG~v~dst~~~-~p~~f~lG~g~li~Gleea 444 (489)
--..+++...+.++++||+|+|++.| +|..|..|+.|.|||++++ .+|++|++++.+ .|+.|.+| .+|+||.++
T Consensus 87 fl~~~~k~~gv~~t~sGl~y~vi~~G--~G~~p~~~d~V~v~Y~g~l-~dG~vfdss~~~g~P~~f~l~--~vipG~~ea 161 (206)
T PRK11570 87 FLEENAKKEGVNSTESGLQFRVLTQG--EGAIPARTDRVRVHYTGKL-IDGTVFDSSVARGEPAEFPVN--GVIPGWIEA 161 (206)
T ss_pred HHHHhhhcCCcEECCCCcEEEEEeCC--CCCCCCCCCEEEEEEEEEE-CCCCEEEeccCCCCCeEEEee--chhhHHHHH
Confidence 33556778899999999999999999 7899999999999999999 799999999865 79999995 699999999
Q ss_pred hcCCccCcEEEEEECCCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011303 445 VNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489 (489)
Q Consensus 445 L~gMkvGek~~i~IPp~laYG~~g~~~~IPp~s~LvfeVeLl~Vk 489 (489)
|.+|++|++++|+|||.+|||..+.++.||||++|+|+|+|++|+
T Consensus 162 L~~M~~G~k~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 162 LTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred HcCCCCCCEEEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEEC
Confidence 999999999999999999999999887899999999999999984
No 6
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.2e-22 Score=188.51 Aligned_cols=110 Identities=45% Similarity=0.832 Sum_probs=100.1
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEeeCCeEEeccCCC-CCeEEEcCccccccchHHHhcCCccCcEEEEE
Q 011303 379 FPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLT 457 (489)
Q Consensus 379 ~~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~g~~~~dG~v~dst~~~-~p~~f~lG~g~li~GleeaL~gMkvGek~~i~ 457 (489)
...+|.+.++..-..+..++..||+|.+||++.+ .||++|||||.+ .|+.|.||.+++|+||+.+|.+|++|++|+++
T Consensus 66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~l-eDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~ 144 (188)
T KOG0549|consen 66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSL-EDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLI 144 (188)
T ss_pred CCCceeEEEEECCccccccccCCCEEEEEEEEEe-cCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEe
Confidence 3456777777774336788999999999999988 999999999998 69999999999999999999999999999999
Q ss_pred ECCCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011303 458 IPPSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489 (489)
Q Consensus 458 IPp~laYG~~g~~~~IPp~s~LvfeVeLl~Vk 489 (489)
|||+++||.+|.++.||++++|+|+|+|+.+.
T Consensus 145 IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~ 176 (188)
T KOG0549|consen 145 IPPHLGYGERGAPPKIPGDAVLIFDIELVKIE 176 (188)
T ss_pred cCccccCccCCCCCCCCCCeeEEEEEEEEEee
Confidence 99999999999888899999999999999873
No 7
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.88 E-value=3.1e-22 Score=188.84 Aligned_cols=115 Identities=21% Similarity=0.341 Sum_probs=107.3
Q ss_pred CCeEECCCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEeeCCeEEeccCCCCCeEEEcCccccccchHHHhcCCccCcE
Q 011303 374 SQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDK 453 (489)
Q Consensus 374 ~~~~~~~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~g~~~~dG~v~dst~~~~p~~f~lG~g~li~GleeaL~gMkvGek 453 (489)
..+.++++|++|.++..+.++|..|..||.|++||++++ .+|.+|++++...|+.|.+|.+.+++||+++|.+|++|++
T Consensus 62 ~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~-~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~ 140 (177)
T TIGR03516 62 VKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRA-LDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGET 140 (177)
T ss_pred CCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEe-CCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCE
Confidence 566889999999999875447889999999999999999 7999999998778999999999999999999999999999
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011303 454 RRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489 (489)
Q Consensus 454 ~~i~IPp~laYG~~g~~~~IPp~s~LvfeVeLl~Vk 489 (489)
++|+|||.+|||..|.+..||||++|+|+|+|++|+
T Consensus 141 ~~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 141 ATFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 999999999999999887899999999999999985
No 8
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.84 E-value=2.1e-20 Score=186.82 Aligned_cols=117 Identities=43% Similarity=0.740 Sum_probs=108.2
Q ss_pred hhhhhcCCCeEECCCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEeeCCeEEeccCCC-CCeEEEcCccccccchHHHh
Q 011303 367 VQSEAKSSQVRTFPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGV 445 (489)
Q Consensus 367 ~~~~~~~~~~~~~~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~g~~~~dG~v~dst~~~-~p~~f~lG~g~li~GleeaL 445 (489)
-..+++...+.++++||+|+|+..| +|..|..||.|.|||++++ .+|++|++++.+ .|+.|.++ .+|+||.++|
T Consensus 132 l~~~~k~~gv~~t~sGl~y~Vi~~G--~G~~p~~gD~V~V~Y~g~l-~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL 206 (269)
T PRK10902 132 REKFAKEKGVKTTSTGLLYKVEKEG--TGEAPKDSDTVVVNYKGTL-IDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGL 206 (269)
T ss_pred HHHhccCCCcEECCCccEEEEEeCC--CCCCCCCCCEEEEEEEEEe-CCCCEeeccccCCCceEEecC--CcchHHHHHH
Confidence 3667778899999999999999999 7899999999999999998 799999999865 78999884 6999999999
Q ss_pred cCCccCcEEEEEECCCCCCCCCCCCCCCCCCCeEEEEEEEEEeC
Q 011303 446 NGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNSWLVFDVELIDVR 489 (489)
Q Consensus 446 ~gMkvGek~~i~IPp~laYG~~g~~~~IPp~s~LvfeVeLl~Vk 489 (489)
.+|++|++++|+||+.++||..+.+. ||||++|+|+|+|++|+
T Consensus 207 ~~Mk~Gek~~l~IP~~laYG~~g~~g-Ippns~LvfeVeLl~V~ 249 (269)
T PRK10902 207 KNIKKGGKIKLVIPPELAYGKAGVPG-IPANSTLVFDVELLDVK 249 (269)
T ss_pred hcCCCCcEEEEEECchhhCCCCCCCC-CCCCCcEEEEEEEEEec
Confidence 99999999999999999999999875 99999999999999874
No 9
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.77 E-value=2.5e-18 Score=144.91 Aligned_cols=90 Identities=47% Similarity=0.948 Sum_probs=83.9
Q ss_pred CCCCCCCeEEEEEEEEEeeCCeEEeccCCC-CCeEEEcCccccccchHHHhcCCccCcEEEEEECCCCCCCCCCC-CCCC
Q 011303 396 KRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGA-GGKI 473 (489)
Q Consensus 396 ~~~~~Gd~V~i~Y~g~~~~dG~v~dst~~~-~p~~f~lG~g~li~GleeaL~gMkvGek~~i~IPp~laYG~~g~-~~~I 473 (489)
..|+.||.|+|||.+++ .+|++|++++.. .|+.|.+|.+.+++||+.||.+|++|++++|+||+.++||..+. +..|
T Consensus 3 ~~~~~gd~V~i~y~~~~-~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~i 81 (94)
T PF00254_consen 3 RTPKEGDTVTIHYTGRL-EDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKI 81 (94)
T ss_dssp SSBSTTSEEEEEEEEEE-TTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTB
T ss_pred ccCCCCCEEEEEEEEEE-CCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCc
Confidence 56899999999999999 599999999754 79999999999999999999999999999999999999999986 4459
Q ss_pred CCCCeEEEEEEEE
Q 011303 474 PPNSWLVFDVELI 486 (489)
Q Consensus 474 Pp~s~LvfeVeLl 486 (489)
||+++|+|+|+|+
T Consensus 82 p~~~~l~f~Iell 94 (94)
T PF00254_consen 82 PPNSTLVFEIELL 94 (94)
T ss_dssp TTTSEEEEEEEEE
T ss_pred CCCCeEEEEEEEC
Confidence 9999999999997
No 10
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.56 E-value=1.3e-14 Score=134.60 Aligned_cols=72 Identities=28% Similarity=0.546 Sum_probs=67.8
Q ss_pred CCCCCCCeEEEEEEEEEeeCCeEEeccCCC-CCeEEEcCccccccchHHHhcCCccCcEEEEEECCCCCCCCCC
Q 011303 396 KRASPGKQVSVRYIGKLKKNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEG 468 (489)
Q Consensus 396 ~~~~~Gd~V~i~Y~g~~~~dG~v~dst~~~-~p~~f~lG~g~li~GleeaL~gMkvGek~~i~IPp~laYG~~g 468 (489)
+.++.|+.|++||++++ .+|++|++|+.+ .|+.|.+|.+.+++||++||.+|++|+++.|.|||.+|||.+.
T Consensus 3 m~i~~~~~V~v~Y~~~~-~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 3 ESVQSNSAVLVHFTLKL-DDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred cccCCCCEEEEEEEEEe-CCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 46889999999999999 899999999974 8999999999999999999999999999999999999999765
No 11
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5.1e-14 Score=145.49 Aligned_cols=105 Identities=34% Similarity=0.620 Sum_probs=91.7
Q ss_pred CCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEeeCCeEEeccCCCCCeEEEcCc-cccccchHHHhcCCccCcEEEEEE
Q 011303 380 PNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGV-GEVIKGWDVGVNGMRVGDKRRLTI 458 (489)
Q Consensus 380 ~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~g~~~~dG~v~dst~~~~p~~f~lG~-g~li~GleeaL~gMkvGek~~i~I 458 (489)
..+|+.+|++.|.++-..|..|..|.+||.|++ .++ +|+... ..|.|.+|. ..+|.||+.||..|++|+++.|+|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~-~~~-~f~~~~--~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i 158 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGEL-EDG-VFDQRE--LRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTI 158 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEE-CCc-ceeccc--cceEEecCCccchhHHHHHHHHhcCccceEEEEe
Confidence 888999999999532388999999999999999 566 776653 347888887 479999999999999999999999
Q ss_pred CCCCCCC-CCCCCCCCCCCCeEEEEEEEEEe
Q 011303 459 PPSMGYG-TEGAGGKIPPNSWLVFDVELIDV 488 (489)
Q Consensus 459 Pp~laYG-~~g~~~~IPp~s~LvfeVeLl~V 488 (489)
+|.|+|| ..+.++.||||++|.|+|+|+++
T Consensus 159 ~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f 189 (397)
T KOG0543|consen 159 DPKYAYGEEGGEPPLIPPNATLLYEVELLDF 189 (397)
T ss_pred CcccccCCCCCCCCCCCCCceEEEEEEEEee
Confidence 9999999 44577789999999999999987
No 12
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.8e-13 Score=127.69 Aligned_cols=72 Identities=28% Similarity=0.573 Sum_probs=68.1
Q ss_pred CCCCCCCeEEEEEEEEEeeCCeEEeccCC-CCCeEEEcCccccccchHHHhcCCccCcEEEEEECCCCCCCCCC
Q 011303 396 KRASPGKQVSVRYIGKLKKNGKIFDSNVG-RAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEG 468 (489)
Q Consensus 396 ~~~~~Gd~V~i~Y~g~~~~dG~v~dst~~-~~p~~f~lG~g~li~GleeaL~gMkvGek~~i~IPp~laYG~~g 468 (489)
+.+..|+.|+|+|++++ .+|.+|++|.. ..|+.|++|.+++|+||++||.+|.+|+++.|.|||..|||.+.
T Consensus 1 m~i~k~~~V~i~Y~~~~-~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 1 MKIEKGDVVSLHYTLKV-EDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred CcccCCCEEEEEEEEEe-cCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 35789999999999999 78999999988 68999999999999999999999999999999999999999875
No 13
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.47 E-value=1.6e-13 Score=131.16 Aligned_cols=72 Identities=25% Similarity=0.455 Sum_probs=68.2
Q ss_pred CCCCCCCeEEEEEEEEEeeCCeEEeccCCCCCeEEEcCccccccchHHHhcCCccCcEEEEEECCCCCCCCCC
Q 011303 396 KRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEG 468 (489)
Q Consensus 396 ~~~~~Gd~V~i~Y~g~~~~dG~v~dst~~~~p~~f~lG~g~li~GleeaL~gMkvGek~~i~IPp~laYG~~g 468 (489)
+.|..++.|+|+|++++ .+|.+|++|+...|+.|++|.++++++|+.||.+|.+|+++.|.|||..|||.+.
T Consensus 1 MkI~~~~vV~l~Y~l~~-~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 1 MKVAKDLVVSLAYQVRT-EDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred CccCCCCEEEEEEEEEe-CCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 35788999999999999 7999999998889999999999999999999999999999999999999999876
No 14
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.77 E-value=3.9e-08 Score=104.25 Aligned_cols=86 Identities=23% Similarity=0.533 Sum_probs=76.7
Q ss_pred CCCCCCCeEEEEEEEEEeeCCeEEeccCCCCCeEEEcCccccccchHHHhcCCccCcEEEEEECCCCCCCCCCCCCCCCC
Q 011303 396 KRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPP 475 (489)
Q Consensus 396 ~~~~~Gd~V~i~Y~g~~~~dG~v~dst~~~~p~~f~lG~g~li~GleeaL~gMkvGek~~i~IPp~laYG~~g~~~~IPp 475 (489)
.++..||.|+++|+++. +|..|+++. ..++.|.+|.+.+++||+.+|.||++|+++.|.+|+...|+.... +
T Consensus 145 ~~~~~gD~V~v~~~~~~--dg~~~~~~~-~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~ 216 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI--DGEAFEGGK-AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----A 216 (408)
T ss_pred cccCCCCEEEEEEEEEE--CCEECcCCC-CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----C
Confidence 35889999999999987 899998764 378999999999999999999999999999999999999987653 6
Q ss_pred CCeEEEEEEEEEeC
Q 011303 476 NSWLVFDVELIDVR 489 (489)
Q Consensus 476 ~s~LvfeVeLl~Vk 489 (489)
|.++.|.|+|.+|+
T Consensus 217 gk~~~f~v~i~~I~ 230 (408)
T TIGR00115 217 GKEATFKVTVKEVK 230 (408)
T ss_pred CCeEEEEEEEEEec
Confidence 78999999999884
No 15
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.5e-08 Score=105.40 Aligned_cols=78 Identities=49% Similarity=0.867 Sum_probs=72.2
Q ss_pred CCCCCCCCeEEEEEEEEEeeCCeEEeccCCCCCeEEEcCccccccchHHHhcCCccCcEEEEEECCCCCCCCCCCCCCCC
Q 011303 395 GKRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIP 474 (489)
Q Consensus 395 G~~~~~Gd~V~i~Y~g~~~~dG~v~dst~~~~p~~f~lG~g~li~GleeaL~gMkvGek~~i~IPp~laYG~~g~~~~IP 474 (489)
...|..|+.|.+||++++ .||+.|+++....||.|.+|.+.+|.||..++..|+. |..+.++.||
T Consensus 6 ~~~p~~g~~v~~hytg~l-~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~pp~ip 70 (397)
T KOG0543|consen 6 TETPMTGDKVEVHYTGTL-LDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSPPKIP 70 (397)
T ss_pred ccCCCCCceeEEEEeEEe-cCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCCCCCCC
Confidence 367889999999999999 9999999998888999999999999999999999987 7778888899
Q ss_pred CCCeEEEEEEEEE
Q 011303 475 PNSWLVFDVELID 487 (489)
Q Consensus 475 p~s~LvfeVeLl~ 487 (489)
++++|+|+|+|++
T Consensus 71 ~~a~l~fe~el~D 83 (397)
T KOG0543|consen 71 SNATLLFEVELLD 83 (397)
T ss_pred CCcceeeeecccC
Confidence 9999999999853
No 16
>PRK01490 tig trigger factor; Provisional
Probab=98.68 E-value=1.1e-07 Score=101.76 Aligned_cols=86 Identities=23% Similarity=0.559 Sum_probs=76.0
Q ss_pred CCCCCCCeEEEEEEEEEeeCCeEEeccCCCCCeEEEcCccccccchHHHhcCCccCcEEEEEECCCCCCCCCCCCCCCCC
Q 011303 396 KRASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPP 475 (489)
Q Consensus 396 ~~~~~Gd~V~i~Y~g~~~~dG~v~dst~~~~p~~f~lG~g~li~GleeaL~gMkvGek~~i~IPp~laYG~~g~~~~IPp 475 (489)
.+++.||.|+|+|.++. +|..|+.+.. .++.|.+|.+.+++||+++|.||++|+++.|.+++...|+.... +
T Consensus 156 ~~~~~gD~V~vd~~~~~--~g~~~~~~~~-~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----a 227 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI--DGEEFEGGKA-EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----A 227 (435)
T ss_pred ccCCCCCEEEEEEEEEE--CCEECcCCCC-CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----C
Confidence 35899999999999998 8999887643 68999999999999999999999999999999998888877543 5
Q ss_pred CCeEEEEEEEEEeC
Q 011303 476 NSWLVFDVELIDVR 489 (489)
Q Consensus 476 ~s~LvfeVeLl~Vk 489 (489)
|.++.|.|+|..|+
T Consensus 228 gk~~~f~v~v~~V~ 241 (435)
T PRK01490 228 GKEATFKVTVKEVK 241 (435)
T ss_pred CCeEEEEEEEEEec
Confidence 68999999999884
No 17
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=7.5e-07 Score=95.45 Aligned_cols=84 Identities=24% Similarity=0.535 Sum_probs=73.2
Q ss_pred CCCCCeEEEEEEEEEeeCCeEEeccCCCCCeEEEcCccccccchHHHhcCCccCcEEEEEECCCCCCCCCCCCCCCCCCC
Q 011303 398 ASPGKQVSVRYIGKLKKNGKIFDSNVGRAPFKFRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAGGKIPPNS 477 (489)
Q Consensus 398 ~~~Gd~V~i~Y~g~~~~dG~v~dst~~~~p~~f~lG~g~li~GleeaL~gMkvGek~~i~IPp~laYG~~g~~~~IPp~s 477 (489)
++.||.|+|.|.|+. ||..|..... ..+.|.||.+.|||||+.+|.||++|+...|.|.+...|....+ +|.
T Consensus 158 a~~gD~v~IDf~g~i--Dg~~fegg~a-e~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aGK 229 (441)
T COG0544 158 AENGDRVTIDFEGSV--DGEEFEGGKA-ENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AGK 229 (441)
T ss_pred cccCCEEEEEEEEEE--cCeeccCccc-cCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CCC
Confidence 889999999999987 9998877533 67999999999999999999999999999988887777876554 457
Q ss_pred eEEEEEEEEEeC
Q 011303 478 WLVFDVELIDVR 489 (489)
Q Consensus 478 ~LvfeVeLl~Vk 489 (489)
+..|.|+|..|+
T Consensus 230 ~a~F~V~vkeVk 241 (441)
T COG0544 230 EATFKVKVKEVK 241 (441)
T ss_pred ceEEEEEEEEEe
Confidence 889999998874
No 18
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=8.4e-06 Score=80.36 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=67.8
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCCeEEEEEEEEEe-eCCeEEeccCCC-CCeEEEcCccccccchHHHhcCCccCcEEEE
Q 011303 379 FPNGLVIEEVAMGKPDGKRASPGKQVSVRYIGKLK-KNGKIFDSNVGR-APFKFRLGVGEVIKGWDVGVNGMRVGDKRRL 456 (489)
Q Consensus 379 ~~sGl~~~il~~G~~~G~~~~~Gd~V~i~Y~g~~~-~dG~v~dst~~~-~p~~f~lG~g~li~GleeaL~gMkvGek~~i 456 (489)
.-.|+..+||..|++.-.....|..|.+||..... ..++++|.++.. .|+.+++|.-.-++-|+..|..|++++.+.|
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~EvaqF 87 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQF 87 (329)
T ss_pred cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHHh
Confidence 45689999999995323556799999999999873 236789998876 8999999998899999999999999999887
Q ss_pred EECC
Q 011303 457 TIPP 460 (489)
Q Consensus 457 ~IPp 460 (489)
++..
T Consensus 88 ~~d~ 91 (329)
T KOG0545|consen 88 WCDT 91 (329)
T ss_pred hhhh
Confidence 6643
No 19
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0016 Score=61.57 Aligned_cols=41 Identities=49% Similarity=0.954 Sum_probs=36.9
Q ss_pred EEcCccccccchHHHhcCCccCcEEEEEECCCCCCCCCCCC
Q 011303 430 FRLGVGEVIKGWDVGVNGMRVGDKRRLTIPPSMGYGTEGAG 470 (489)
Q Consensus 430 f~lG~g~li~GleeaL~gMkvGek~~i~IPp~laYG~~g~~ 470 (489)
|.+|.+.+|+|++.+|.+|+.|+++++++||.++||..+..
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~ 41 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG 41 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc
Confidence 46788999999999999999999999999999999965543
No 20
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=85.24 E-value=0.48 Score=50.68 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=4.5
Q ss_pred CCeEEEcC
Q 011303 426 APFKFRLG 433 (489)
Q Consensus 426 ~p~~f~lG 433 (489)
+++-|+.|
T Consensus 387 gaIDIVkG 394 (458)
T PF10446_consen 387 GAIDIVKG 394 (458)
T ss_pred ccccceec
Confidence 45555555
No 21
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=77.74 E-value=2.1 Score=42.91 Aligned_cols=7 Identities=29% Similarity=0.150 Sum_probs=3.0
Q ss_pred EEeeeee
Q 011303 89 HLAGYFE 95 (489)
Q Consensus 89 HlsGy~~ 95 (489)
|--|...
T Consensus 232 hkyGRQ~ 238 (314)
T PF06524_consen 232 HKYGRQG 238 (314)
T ss_pred chhcccc
Confidence 4444433
No 22
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=71.86 E-value=3.6 Score=44.26 Aligned_cols=6 Identities=33% Similarity=0.999 Sum_probs=2.4
Q ss_pred cccchH
Q 011303 437 VIKGWD 442 (489)
Q Consensus 437 li~Gle 442 (489)
++.||+
T Consensus 391 IVkGLE 396 (458)
T PF10446_consen 391 IVKGLE 396 (458)
T ss_pred ceechh
Confidence 344443
No 23
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=70.76 E-value=3 Score=47.19 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=11.2
Q ss_pred CcEEEEEe-cCccEEEeeee
Q 011303 76 DVVVFSVK-GPQSIHLAGYF 94 (489)
Q Consensus 76 ~~V~f~v~-G~~~VHlsGy~ 94 (489)
..++|.|+ +.+|+||.=.|
T Consensus 74 ~~~~iyViDshRP~~L~Nv~ 93 (622)
T PF02724_consen 74 EDVTIYVIDSHRPWNLDNVF 93 (622)
T ss_pred CceEEEEEeCCCCccHhhcc
Confidence 34666654 67777775433
No 24
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=66.36 E-value=5.5 Score=40.06 Aligned_cols=11 Identities=9% Similarity=0.166 Sum_probs=4.3
Q ss_pred ccceeceeeeC
Q 011303 63 NESCPLKLEFD 73 (489)
Q Consensus 63 ~eq~~LdL~F~ 73 (489)
+|-|...+.-+
T Consensus 212 CPKCg~et~eT 222 (314)
T PF06524_consen 212 CPKCGYETQET 222 (314)
T ss_pred CCCCCCccccc
Confidence 34444443333
No 25
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=59.92 E-value=8.1 Score=42.38 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=8.7
Q ss_pred CccEEEeeeeeccC
Q 011303 85 PQSIHLAGYFEAES 98 (489)
Q Consensus 85 ~~~VHlsGy~~~~~ 98 (489)
.+..||+=|-....
T Consensus 54 tgalHlrrvesa~~ 67 (694)
T KOG4264|consen 54 TGALHLRRVESAKP 67 (694)
T ss_pred cCccchhcccccCc
Confidence 46678777755443
No 26
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=59.87 E-value=6 Score=39.71 Aligned_cols=11 Identities=9% Similarity=-0.233 Sum_probs=7.6
Q ss_pred CCeEEEEEEeC
Q 011303 38 TEKSILQCSVG 48 (489)
Q Consensus 38 ~e~~~v~~~v~ 48 (489)
+|.++||+.+-
T Consensus 57 ~g~~yLymKt~ 67 (303)
T KOG3064|consen 57 NGVLYLYMKTI 67 (303)
T ss_pred CCEEEEEEech
Confidence 56678887753
No 27
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=49.07 E-value=13 Score=43.73 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=8.9
Q ss_pred CCCCCCeEEEEEEEEE
Q 011303 397 RASPGKQVSVRYIGKL 412 (489)
Q Consensus 397 ~~~~Gd~V~i~Y~g~~ 412 (489)
-|..++.|.+..++.+
T Consensus 537 ~P~l~~Lvllklv~~l 552 (840)
T PF04147_consen 537 WPSLSDLVLLKLVGTL 552 (840)
T ss_pred CCChhHHHHHHHHHHh
Confidence 4555666665554443
No 28
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=44.19 E-value=18 Score=31.63 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=16.6
Q ss_pred hhhhhhcCCCeEECCCceEEEE
Q 011303 366 QVQSEAKSSQVRTFPNGLVIEE 387 (489)
Q Consensus 366 ~~~~~~~~~~~~~~~sGl~~~i 387 (489)
--..+++...+++++|||+|+|
T Consensus 103 fla~n~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 103 FLAENAKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHHHHTSTTEEE-TTS-EEEE
T ss_pred HHHHHcCCCCCEECCCCCeeeC
Confidence 3366778899999999999987
No 29
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=42.82 E-value=19 Score=43.41 Aligned_cols=8 Identities=25% Similarity=0.243 Sum_probs=4.3
Q ss_pred EEeeeeec
Q 011303 89 HLAGYFEA 96 (489)
Q Consensus 89 HlsGy~~~ 96 (489)
.|+|...-
T Consensus 1707 llsgnttn 1714 (3015)
T KOG0943|consen 1707 LLSGNTTN 1714 (3015)
T ss_pred hccCCccC
Confidence 56666543
No 30
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=41.48 E-value=62 Score=29.90 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.0
Q ss_pred ccccchHHHhcCCccCcEEEEEECC
Q 011303 436 EVIKGWDVGVNGMRVGDKRRLTIPP 460 (489)
Q Consensus 436 ~li~GleeaL~gMkvGek~~i~IPp 460 (489)
++..-|-.||.|.++|+.+.|.+|.
T Consensus 121 S~~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 121 SIESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred ccCChHHHHHhCCCCCCEEEEEcCC
Confidence 4556788999999999999998764
No 31
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=38.92 E-value=16 Score=42.37 Aligned_cols=6 Identities=17% Similarity=0.445 Sum_probs=3.2
Q ss_pred cEEEEE
Q 011303 77 VVVFSV 82 (489)
Q Consensus 77 ~V~f~v 82 (489)
.+.|..
T Consensus 635 ~~~~~~ 640 (787)
T PF03115_consen 635 QLYFEM 640 (787)
T ss_dssp EEEEEE
T ss_pred eEeEee
Confidence 455554
No 32
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=37.08 E-value=26 Score=40.33 Aligned_cols=8 Identities=13% Similarity=0.493 Sum_probs=3.8
Q ss_pred ceeeeCCC
Q 011303 68 LKLEFDED 75 (489)
Q Consensus 68 LdL~F~~~ 75 (489)
.||-|.++
T Consensus 835 cDI~y~Eg 842 (960)
T KOG1189|consen 835 CDIKYTEG 842 (960)
T ss_pred ccceeecc
Confidence 34555543
No 33
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=36.80 E-value=1.1e+02 Score=28.52 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.5
Q ss_pred cccchHHHhcCCccCcEEEEEECC
Q 011303 437 VIKGWDVGVNGMRVGDKRRLTIPP 460 (489)
Q Consensus 437 li~GleeaL~gMkvGek~~i~IPp 460 (489)
+..-|-.||.|.++|+.+.+.+|.
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~ 142 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPA 142 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCC
Confidence 456689999999999999998765
No 34
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=33.13 E-value=1.6e+02 Score=32.94 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=14.1
Q ss_pred ceEEEeeCCC-----CccceeceeeeCCCCcEEEEEe
Q 011303 52 PIFLCSLLPN-----KNESCPLKLEFDEDDVVVFSVK 83 (489)
Q Consensus 52 ~~~L~tL~~~-----~~eq~~LdL~F~~~~~V~f~v~ 83 (489)
.|..|++... ...+.-|.|.+..+-+.+|+.+
T Consensus 375 EIS~V~fsR~~~s~t~trtFD~ei~lk~g~~~tFs~i 411 (615)
T KOG0526|consen 375 EISSVNFSRSGLSGTSTRTFDFEITLKSGTSYTFSNI 411 (615)
T ss_pred ceeeEEEEeccCCccceeeEEEEEEEcCCCeeeeccc
Confidence 3566666432 2223333333333334666654
No 35
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=31.48 E-value=35 Score=38.74 Aligned_cols=11 Identities=9% Similarity=-0.052 Sum_probs=5.9
Q ss_pred CceEEEEEEcC
Q 011303 381 NGLVIEEVAMG 391 (489)
Q Consensus 381 sGl~~~il~~G 391 (489)
..++|-+|..|
T Consensus 498 ~~fr~~~l~dg 508 (622)
T PF02724_consen 498 GPFRYCVLKDG 508 (622)
T ss_pred CCeEEEEeCCc
Confidence 34555555555
No 36
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=27.41 E-value=1.7e+02 Score=27.28 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.5
Q ss_pred cccchHHHhcCCccCcEEEEEECC
Q 011303 437 VIKGWDVGVNGMRVGDKRRLTIPP 460 (489)
Q Consensus 437 li~GleeaL~gMkvGek~~i~IPp 460 (489)
+..-|-.||.|.++|+.+.+.+|.
T Consensus 121 ~~SPlG~ALlGk~vGd~v~v~~p~ 144 (157)
T PRK01885 121 IDSPMARALLKKEVGDEVTVNTPA 144 (157)
T ss_pred ccCHHHHHHhCCCCCCEEEEEcCC
Confidence 355688999999999999998765
No 37
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.55 E-value=42 Score=39.66 Aligned_cols=50 Identities=18% Similarity=0.146 Sum_probs=0.0
Q ss_pred CCCCCCCccCcCcccCCccCcccccCCCCC---------------CCCcCCCCCCCCCCcccccC
Q 011303 98 SGDHLRDEYDSDSYGEDIAETETDESSGFD---------------TEDEYGDDFIDDDDNEEFYS 147 (489)
Q Consensus 98 ~~~~~~dd~e~es~~ed~~~~eede~~~~d---------------ddd~~dDd~~dd~d~e~~~~ 147 (489)
..++..++++.+.+++++-.++++++++++ +..+.+||+++++.++...+
T Consensus 885 ~ee~~~e~~~~~~~~~e~~~~d~dD~d~~d~d~~~~~~~~~~~~~~~~~~ddd~d~~~~~~~ed~ 949 (1010)
T KOG1991|consen 885 EEEDSEEGEEEDDDEEEDFIDDEDDIDEDDQDYLDEYGELALEKEDSLDDDDDFDEDELDLEEDE 949 (1010)
T ss_pred hccccccccCCCCcchhhccCccccccccchhHHHhhccccccccccccccccccchhccccccc
No 38
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=26.44 E-value=1.3e+02 Score=28.07 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=20.7
Q ss_pred ccccchHHHhcCCccCcEEEEEECC
Q 011303 436 EVIKGWDVGVNGMRVGDKRRLTIPP 460 (489)
Q Consensus 436 ~li~GleeaL~gMkvGek~~i~IPp 460 (489)
++..-|-.||.|.++|+.+.|.+|.
T Consensus 120 S~~SPlG~ALlGk~vGD~v~v~~p~ 144 (158)
T PRK05892 120 TADSPLGQALAGHQAGDTVTYSTPQ 144 (158)
T ss_pred ccCCHHHHHHhCCCCCCEEEEEcCC
Confidence 3445689999999999999998764
No 39
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=26.00 E-value=42 Score=39.65 Aligned_cols=9 Identities=56% Similarity=0.792 Sum_probs=4.9
Q ss_pred CCCCCeEEE
Q 011303 398 ASPGKQVSV 406 (489)
Q Consensus 398 ~~~Gd~V~i 406 (489)
.++||.|.|
T Consensus 408 F~~GD~VeV 416 (1024)
T KOG1999|consen 408 FSPGDAVEV 416 (1024)
T ss_pred cCCCCeEEE
Confidence 455666554
No 40
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=25.15 E-value=81 Score=28.96 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.2
Q ss_pred ccccchHHHhcCCccCcEEEEEECC
Q 011303 436 EVIKGWDVGVNGMRVGDKRRLTIPP 460 (489)
Q Consensus 436 ~li~GleeaL~gMkvGek~~i~IPp 460 (489)
++...|-.||.|.++|+.+.+.+|.
T Consensus 116 S~~SPlG~ALlG~~~Gd~v~v~~p~ 140 (151)
T TIGR01462 116 SIDSPLGKALIGKKVGDVVEVQTPK 140 (151)
T ss_pred cCCCHHHHHHcCCCCCCEEEEEeCC
Confidence 4556789999999999999998765
No 41
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=24.72 E-value=45 Score=33.75 Aligned_cols=6 Identities=33% Similarity=0.246 Sum_probs=2.3
Q ss_pred EEEEEE
Q 011303 26 HVTQAT 31 (489)
Q Consensus 26 hLsqa~ 31 (489)
.||.+|
T Consensus 33 NvTGLC 38 (303)
T KOG3064|consen 33 NVTGLC 38 (303)
T ss_pred ccceee
Confidence 344433
No 42
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=23.89 E-value=89 Score=36.02 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=17.1
Q ss_pred CeEEEcCccccccchHHHhcCCccCc
Q 011303 427 PFKFRLGVGEVIKGWDVGVNGMRVGD 452 (489)
Q Consensus 427 p~~f~lG~g~li~GleeaL~gMkvGe 452 (489)
-|-.+++....+.+|+..|..--.|.
T Consensus 624 IFcsImsaeDyiDAFEklLkL~LK~~ 649 (822)
T KOG2141|consen 624 IFCSIMSAEDYIDAFEKLLKLSLKGK 649 (822)
T ss_pred heeeeecchHHHHHHHHHHhccCCCc
Confidence 45556677777888887776555554
No 43
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.03 E-value=30 Score=39.44 Aligned_cols=7 Identities=29% Similarity=0.624 Sum_probs=3.9
Q ss_pred cEEEeee
Q 011303 87 SIHLAGY 93 (489)
Q Consensus 87 ~VHlsGy 93 (489)
||-|.|-
T Consensus 302 PvLl~~M 308 (885)
T KOG2023|consen 302 PVLLSGM 308 (885)
T ss_pred HHHHccC
Confidence 5556663
No 44
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=20.29 E-value=3.3e+02 Score=24.71 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=20.8
Q ss_pred ccccchHHHhcCCccCcEEEEEECC
Q 011303 436 EVIKGWDVGVNGMRVGDKRRLTIPP 460 (489)
Q Consensus 436 ~li~GleeaL~gMkvGek~~i~IPp 460 (489)
.+..-+-.||.|.++|+.+.+..|.
T Consensus 90 Si~SPlG~ALlG~~~Gd~v~v~~p~ 114 (137)
T PRK05753 90 SVLAPVGAALLGLSVGQSIDWPLPG 114 (137)
T ss_pred cccCHHHHHHcCCCCCCEEEEECCC
Confidence 3456789999999999999988654
Done!