Query 011304
Match_columns 489
No_of_seqs 65 out of 67
Neff 2.3
Searched_HMMs 46136
Date Thu Mar 28 23:52:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02501 digalactosyldiacylgly 100.0 5E-197 1E-201 1541.4 32.5 481 4-489 3-503 (794)
2 PLN02846 digalactosyldiacylgly 100.0 2.3E-47 5E-52 386.4 8.0 183 307-489 2-185 (462)
3 cd03817 GT1_UGDG_like This fam 94.8 0.095 2.1E-06 46.5 6.8 45 311-356 1-45 (374)
4 cd03814 GT1_like_2 This family 92.4 0.5 1.1E-05 42.3 7.1 41 311-352 1-41 (364)
5 cd03794 GT1_wbuB_like This fam 86.3 2 4.4E-05 38.1 6.0 44 311-355 1-44 (394)
6 cd03801 GT1_YqgM_like This fam 82.3 2.7 5.8E-05 36.6 4.9 43 311-354 1-43 (374)
7 PRK02812 ribose-phosphate pyro 81.1 1.9 4.2E-05 43.7 4.2 122 258-387 14-140 (330)
8 cd03820 GT1_amsD_like This fam 71.8 4.8 0.0001 35.2 3.6 119 311-460 1-120 (348)
9 PF13793 Pribosyltran_N: N-ter 69.7 6.9 0.00015 34.3 4.1 53 309-363 47-100 (116)
10 TIGR01251 ribP_PPkin ribose-ph 68.3 7.1 0.00015 38.8 4.4 72 308-387 46-120 (308)
11 PRK04923 ribose-phosphate pyro 66.8 8.3 0.00018 39.0 4.6 72 308-387 52-126 (319)
12 PRK03092 ribose-phosphate pyro 65.4 9.7 0.00021 38.1 4.7 72 308-387 35-108 (304)
13 PRK01259 ribose-phosphate pyro 62.6 9.4 0.0002 38.2 4.0 72 308-387 46-119 (309)
14 PLN02369 ribose-phosphate pyro 59.9 14 0.00029 37.1 4.6 71 309-387 38-110 (302)
15 PRK00553 ribose-phosphate pyro 58.4 11 0.00024 38.3 3.8 51 309-361 56-107 (332)
16 PLN02297 ribose-phosphate pyro 57.8 14 0.00029 38.0 4.2 71 308-387 65-141 (326)
17 PRK02458 ribose-phosphate pyro 56.0 16 0.00034 37.1 4.3 72 308-387 55-128 (323)
18 cd02024 NRK1 Nicotinamide ribo 55.1 5.4 0.00012 37.4 0.9 29 275-303 139-167 (187)
19 PRK02269 ribose-phosphate pyro 54.9 17 0.00038 36.6 4.4 51 309-361 52-103 (320)
20 PRK00934 ribose-phosphate pyro 54.5 19 0.0004 35.6 4.5 66 309-382 46-113 (285)
21 PTZ00145 phosphoribosylpyropho 53.0 14 0.00031 39.5 3.6 72 308-387 165-238 (439)
22 PRK07199 phosphoribosylpyropho 47.0 27 0.00058 35.0 4.3 66 308-381 48-115 (301)
23 PF08824 Serine_rich: Serine r 44.9 17 0.00038 34.2 2.5 86 11-101 22-110 (159)
24 PRK03979 ADP-specific phosphof 33.9 6.9 0.00015 42.1 -2.2 99 323-427 101-229 (463)
25 PF08822 DUF1804: Protein of u 31.9 96 0.0021 29.7 5.2 92 147-251 38-143 (165)
26 cd03809 GT1_mtfB_like This fam 29.5 4.3E+02 0.0094 23.9 8.9 42 311-353 1-43 (365)
27 PF06570 DUF1129: Protein of u 27.1 23 0.00049 33.2 0.2 61 185-249 5-68 (206)
28 COG5016 Pyruvate/oxaloacetate 26.0 63 0.0014 35.4 3.2 148 142-290 43-241 (472)
29 PRK06827 phosphoribosylpyropho 25.7 1.1E+02 0.0023 32.4 4.8 72 308-387 76-161 (382)
30 PRK01642 cls cardiolipin synth 24.9 1.9E+02 0.0042 30.6 6.5 77 305-403 327-403 (483)
31 PF02780 Transketolase_C: Tran 22.3 76 0.0017 26.8 2.5 46 307-359 7-53 (124)
32 PF08747 DUF1788: Domain of un 20.6 54 0.0012 29.5 1.3 20 388-407 92-111 (126)
No 1
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=5.3e-197 Score=1541.39 Aligned_cols=481 Identities=81% Similarity=1.287 Sum_probs=466.9
Q ss_pred CCCCCCCCcchhhhhhhhHHhhcchhhhHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCCC----------CCchhhhHHH
Q 011304 4 ETQATSSSKAFSFISRSWREVRDSADADIQLMKNRANSFKNLATSFDRELENFLNSANRS----------SAPAEIDFVK 73 (489)
Q Consensus 4 ~~~~~~~~~afsf~skg~revrdsa~adl~lmr~ra~s~~~la~~~drele~~~~sas~~----------~~~~e~~f~~ 73 (489)
.+++.++++||||||||||||||||||||||||+|||||||||++|||||||||||||++ +||+|+|||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~v~~sa~~~~~l~~~~~~s~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (794)
T PLN02501 3 LSMTLSSTNAFSFLSKGWREVRDSADADLQLMRARANSFKNLASSFDREIENFFNSASRSSFPVGSPSASSFPTEIDFVK 82 (794)
T ss_pred cceeccCcchHHHHHhhHHHhhhcchhhHHHHHHHhhhhhhhhhhhHHHHHHHhhhccccccCCCCcccCCCccchHHHH
Confidence 456677788999999999999999999999999999999999999999999999999983 8999999999
Q ss_pred hhchhhhhhhhhcCchhhhHHHhhhcCCCcceeeehhhhhhhhhcccccccccCCCCccccccCccc---cccccccccc
Q 011304 74 KLQPKISEFRRVYSAPEISKRVLEKWGPRARIRIDLSAIRNAIVSDVDVDAERDGGGIIEFDRGKRG---RVGFRELWGE 150 (489)
Q Consensus 74 ~lqpki~e~rr~ys~~~~~~~vl~~w~~~~~~~~dlsai~~a~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~r~~w~~ 150 (489)
+||||||||||+||+|+|++||||+|+|++++||||||||||||++++. ++++|+|+|+|++++ |.||++||++
T Consensus 83 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~lsai~~a~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 159 (794)
T PLN02501 83 KLQPKISEFRRVYSAPEISRKVLEKWGPRAKLGIDLSAIKNAIVAEMEL---DDRGGIVEFDRVRRRRNSRVRFTEFWGE 159 (794)
T ss_pred HhchhHHHHhhhccCchhhhhhhhccCCcccccccHHHHhhhhcccccc---ccccCcccccccccccccccchhhhhhh
Confidence 9999999999999999999999999999999999999999999998664 568999999877643 4588899985
Q ss_pred ------cccCcchhHHHHHHHHHHHHHhhchhhhhHhcCCCchhHHHHHHhhhhhhccCCCCCCCCCCCChHHHHHHHHH
Q 011304 151 ------REVGEWEPIRTLKMRLREFERKRELSVEEIFGGFKSSDFVEKVKSSWKAICKEPEESKDVPPLDPTELLAHLVR 224 (489)
Q Consensus 151 ------~~~~ewe~ir~~k~~l~e~e~r~~~~~~e~~~gf~~~efvek~k~slk~~~~~~~~skevppld~~ella~lvr 224 (489)
++.+|||||||||++|||||||++++ |||+||||+|||||||+||||||||||+||||||||||||||||||
T Consensus 160 ~~~~~~~~~~~~~~~r~~~~~~~e~e~~~~~~--~~~~~~~~~~~~~k~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (794)
T PLN02501 160 AKEEGEGQFGEWEPIRALKTRFRELEKRSESL--EIFGGFKNSEFVEKLKSSLKAIYKEPQESKDVPPLDVPELLAYLVR 237 (794)
T ss_pred hhhcccccccchhhHHHHHHHHHHHHhhcchH--HHhcccchHHHHHHHHHHHHhhhcCccccccCCCcchHHHHHHHHh
Confidence 38999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccchhhhHHHHHHHhhhhhhhhhhhhcccCCCccccccCCCccccchhhhccccCcccccCCccccCCCCC
Q 011304 225 QSGPFLDHLGVKRDLCDKIVESLCSKRKEQLLLRSIAGGECSVLENDNINDELDLRIASVLQSTGHHYEGGFWTDFGKDD 304 (489)
Q Consensus 225 qs~p~ldqlgvrrd~cdk~ve~l~~k~~~~~~~~~~s~~~~~~~~~~~~~d~ldlriasvlqstg~~~~~g~w~~~~~~~ 304 (489)
||||||||||||||+||||||+||||||+|++||++|++++++++|+|++||||||||||||||||||+||||||+.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (794)
T PLN02501 238 QSEPFLDQLGVRKDICDKIVESLCSKRKNQLLLRSLSAGESSLLESDNHNDELDLRIASVLQSTGHCYDGGFWTDSSKHE 317 (794)
T ss_pred hccchhhhhhhhHHHHHHHHHHHHhhccccccccccccccccccccccccccchhhhhhhhhccCccccCCcccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEccCCCCccccchhHHHHHHhhccCCCccEEEEeeccCCCCCccccCC-cccCChHHHHHHHHHHHHHh
Q 011304 305 LSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPN-VTFCSPEEQENYMRNWLEER 383 (489)
Q Consensus 305 l~d~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g~~~VTLVVPWL~~~DQ~lVYpn-~tF~sPeEQE~yIR~Wl~eR 383 (489)
++|++|||||||||||||||||||||||||||||++|+++|||||||||++||++|||| ++|+||||||+|||+||++|
T Consensus 318 ~~~~~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~r 397 (794)
T PLN02501 318 LSDGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEER 397 (794)
T ss_pred cccCCCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999997 99999999999999999999
Q ss_pred cCCCCCceEeeecCCccCCCcceeecCcccccCCCCCCcEEEecCCcccccccCCCcccccCCcEEEEeecChHHHHhhh
Q 011304 384 VGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKRE 463 (489)
Q Consensus 384 ~Gf~~~fkI~FYPgry~~~~~SI~P~GDit~~IP~~eADVaILEEPEHLNWY~hG~rWT~KF~HVVGIVHTNYleYarre 463 (489)
+||+++|+|.||||||+++++||||||||++.||+.++||++|++|+||+|||||.+|++||++|||++||||.+|++++
T Consensus 398 ~g~~~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y 477 (794)
T PLN02501 398 IGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKRE 477 (794)
T ss_pred cCCCCCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHHHhhccccC
Q 011304 464 KNGALQAFFVKHINNWVTRAYCDKVC 489 (489)
Q Consensus 464 ~~G~~~a~~lk~in~wv~RayCHKVI 489 (489)
++|.+++++++++|+|+.++|||+||
T Consensus 478 ~~g~L~~~llk~l~~~v~r~hcD~VI 503 (794)
T PLN02501 478 KNGALQAFFVKHINNWVTRAYCHKVL 503 (794)
T ss_pred cchhHHHHHHHHHHHHHHHhhCCEEE
Confidence 99999999999999999999999986
No 2
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=2.3e-47 Score=386.39 Aligned_cols=183 Identities=67% Similarity=1.215 Sum_probs=178.1
Q ss_pred CCCceEEEEEccCCCCccccchhHHHHHHhhccCCCccEEEEeeccCCCCCccccCC-cccCChHHHHHHHHHHHHHhcC
Q 011304 307 DKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPN-VTFCSPEEQENYMRNWLEERVG 385 (489)
Q Consensus 307 d~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g~~~VTLVVPWL~~~DQ~lVYpn-~tF~sPeEQE~yIR~Wl~eR~G 385 (489)
+++++||||||+++|||||+|+||+++|+||++.|.++||+|+||+++.+|++|||| ++|++|++||+|||+|+.++++
T Consensus 2 ~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~ 81 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERIS 81 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEE
Confidence 467999999999999999999999999999999997899999999999999999997 9999999999999999999999
Q ss_pred CCCCceEeeecCCccCCCcceeecCcccccCCCCCCcEEEecCCcccccccCCCcccccCCcEEEEeecChHHHHhhhcC
Q 011304 386 FKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKN 465 (489)
Q Consensus 386 f~~~fkI~FYPgry~~~~~SI~P~GDit~~IP~~eADVaILEEPEHLNWY~hG~rWT~KF~HVVGIVHTNYleYarre~~ 465 (489)
+.+.+.|.|||+||+.++++|+|++||.+.|++..+||+.+++|+||+||+||.+|.+||++|||++||||++|++.+++
T Consensus 82 r~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~y~~Y~~~~~~ 161 (462)
T PLN02846 82 FLPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIVHTNYLEYVKREKN 161 (462)
T ss_pred EecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCcEEEEECCChHHHHHHhcc
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhccccC
Q 011304 466 GALQAFFVKHINNWVTRAYCDKVC 489 (489)
Q Consensus 466 G~~~a~~lk~in~wv~RayCHKVI 489 (489)
|.+.+++.+++|+|+.|.|||+||
T Consensus 162 g~~~~~l~~~~~~~~~r~~~d~vi 185 (462)
T PLN02846 162 GRVKAFLLKYINSWVVDIYCHKVI 185 (462)
T ss_pred chHHHHHHHHHHHHHHHHhcCEEE
Confidence 999999999999999999999985
No 3
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=94.82 E-value=0.095 Score=46.48 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=37.9
Q ss_pred eEEEEEccCCCCccccchhHHHHHHhhccCCCccEEEEeeccCCCC
Q 011304 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSD 356 (489)
Q Consensus 311 ~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g~~~VTLVVPWL~~~D 356 (489)
+|.|+|+..+|..+|.+.-..--|-+|++.|. +|+++.|--...+
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~-~v~v~~~~~~~~~ 45 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGH-EVYVVAPSYPGAP 45 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCC-eEEEEeCCCCCCC
Confidence 58999999999999999998888999988765 9999988655433
No 4
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=92.44 E-value=0.5 Score=42.28 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=33.5
Q ss_pred eEEEEEccCCCCccccchhHHHHHHhhccCCCccEEEEeecc
Q 011304 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWL 352 (489)
Q Consensus 311 ~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g~~~VTLVVPWL 352 (489)
+|+|||.+.+|..+|++.--.--|.+|++.|. +|+++.+--
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~-~v~~~~~~~ 41 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGH-EVLVIAPGP 41 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 68999999999998888777667778887664 899988753
No 5
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=86.27 E-value=2 Score=38.08 Aligned_cols=44 Identities=20% Similarity=0.128 Sum_probs=36.1
Q ss_pred eEEEEEccCCCCccccchhHHHHHHhhccCCCccEEEEeeccCCC
Q 011304 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKS 355 (489)
Q Consensus 311 ~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g~~~VTLVVPWL~~~ 355 (489)
+|.|||+...|-.+|...--.--|-+|++.|. +|+++.+--...
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~-~v~~~~~~~~~~ 44 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGH-EVTVITGSPNYP 44 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCc-eEEEEecCCCcc
Confidence 58999999888779999888888889998765 999998764433
No 6
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=82.28 E-value=2.7 Score=36.60 Aligned_cols=43 Identities=28% Similarity=0.230 Sum_probs=34.9
Q ss_pred eEEEEEccCCCCccccchhHHHHHHhhccCCCccEEEEeeccCC
Q 011304 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCK 354 (489)
Q Consensus 311 ~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g~~~VTLVVPWL~~ 354 (489)
+|+|+|+...|...|.+.--.--+.+|.+.|. +|+++.+--..
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~-~v~i~~~~~~~ 43 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGH-EVTVLTPGDGG 43 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCc-eEEEEecCCCC
Confidence 58999999999978888777777888887654 89999887554
No 7
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=81.10 E-value=1.9 Score=43.73 Aligned_cols=122 Identities=11% Similarity=0.110 Sum_probs=71.8
Q ss_pred hhcccCCCccccccCCCccccchhhhccccCcccccCCccccCCC-CCCC--CCCceEEEEEccCCCCccccchhHHHHH
Q 011304 258 RSIAGGECSVLENDNINDELDLRIASVLQSTGHHYEGGFWTDFGK-DDLS--DKKRNVAIVTTASLPWMTGTAVNPLFRA 334 (489)
Q Consensus 258 ~~~s~~~~~~~~~~~~~d~ldlriasvlqstg~~~~~g~w~~~~~-~~l~--d~~R~IaIVTTASLPWMTGTAVNPLlRA 334 (489)
+.+|....-.+-..+.+.+|--+||..|.-.=...+-.-..|+.. ..+. -.+++|.||-|.+-| ....+-.||.+
T Consensus 14 ~~~~~~~~~~i~~g~~~~~la~~ia~~lg~~l~~~~~~~FpDGE~~v~i~~~vrg~~V~ivqs~~~p--~nd~l~eLll~ 91 (330)
T PRK02812 14 PLLSDNNRLRLFSGSSNPALAQEVARYLGMDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPTCAP--VNDHLMELLIM 91 (330)
T ss_pred ccccCCCCEEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCC--ccHHHHHHHHH
Confidence 555554443444455666777777777652222222111222221 1111 135899999986655 24445568888
Q ss_pred HhhccCC-CccEEEEeeccCCCCCccccC-CcccCChHHHHHHHHHHHHHhcCCC
Q 011304 335 AYLAKTE-QQNVTLLVPWLCKSDQELVYP-NVTFCSPEEQENYMRNWLEERVGFK 387 (489)
Q Consensus 335 AYLAr~g-~~~VTLVVPWL~~~DQ~lVYp-n~tF~sPeEQE~yIR~Wl~eR~Gf~ 387 (489)
+.-++.. -.+||+|+|||+=+-|...+. ...+. -.++.+.| +.+|+.
T Consensus 92 ~~alr~~ga~ri~~ViPYl~YaRQDr~~~~~e~is-----ak~vA~lL-~~~g~d 140 (330)
T PRK02812 92 VDACRRASARQITAVIPYYGYARADRKTAGRESIT-----AKLVANLI-TKAGAD 140 (330)
T ss_pred HHHHHHhCCceEEEEEecccccccccccCCCCCch-----HHHHHHHH-HhcCCC
Confidence 8877654 468999999999988887653 22222 24677888 556764
No 8
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=71.77 E-value=4.8 Score=35.18 Aligned_cols=119 Identities=14% Similarity=0.031 Sum_probs=65.1
Q ss_pred eEEEEEccCCCCccccchhHHHHHHhhccCCCccEEEEeeccCCCCCccccCCcccCChHHHHHHHHHHHHHhcCCCCCc
Q 011304 311 NVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGFKADF 390 (489)
Q Consensus 311 ~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g~~~VTLVVPWL~~~DQ~lVYpn~tF~sPeEQE~yIR~Wl~eR~Gf~~~f 390 (489)
+|+|++..-.| ..|+..-=+--|.+|++.|. +|+++.+.-.......+.++ +
T Consensus 1 kI~i~~~~~~~-~gG~~~~~~~l~~~L~~~g~-~v~v~~~~~~~~~~~~~~~~--------------------------~ 52 (348)
T cd03820 1 KILFVIPSLGN-AGGAERVLSNLANALAEKGH-EVTIISLDKGEPPFYELDPK--------------------------I 52 (348)
T ss_pred CeEEEeccccC-CCChHHHHHHHHHHHHhCCC-eEEEEecCCCCCCccccCCc--------------------------c
Confidence 48888887766 77776666667778887654 99999875332011111111 1
Q ss_pred eEeeecCCcc-CCCcceeecCcccccCCCCCCcEEEecCCcccccccCCCcccccCCcEEEEeecChHHHH
Q 011304 391 KISFYPGKFS-KERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYI 460 (489)
Q Consensus 391 kI~FYPgry~-~~~~SI~P~GDit~~IP~~eADVaILEEPEHLNWY~hG~rWT~KF~HVVGIVHTNYleYa 460 (489)
.+...+..+. .....+..+..+..++-....|+++...+.-+.+.. . +..+..++|..+|..+..+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~~~~~--~-~~~~~~~~i~~~~~~~~~~~ 120 (348)
T cd03820 53 KVIDLGDKRDSKLLARFKKLRRLRKLLKNNKPDVVISFLTSLLTFLA--S-LGLKIVKLIVSEHNSPDAYK 120 (348)
T ss_pred ceeecccccccchhccccchHHHHHhhcccCCCEEEEcCchHHHHHH--H-HhhccccEEEecCCCccchh
Confidence 1111111110 222233444556666776788999998877111111 1 11121477888888775543
No 9
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=69.72 E-value=6.9 Score=34.28 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=35.6
Q ss_pred CceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCccccCC
Q 011304 309 KRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVYPN 363 (489)
Q Consensus 309 ~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVYpn 363 (489)
+++|.||.|.+-| .-..+-.||..+.-++.. -.+||+|+|+|.=+.|...-|.
T Consensus 47 g~dv~iiqs~~~~--~nd~lmeLll~i~a~r~~~a~~i~~ViPYl~YaRQDr~~~g 100 (116)
T PF13793_consen 47 GKDVFIIQSTSPP--VNDNLMELLLLIDALRRAGAKRITLVIPYLPYARQDRRKPG 100 (116)
T ss_dssp TSEEEEE---SSS--HHHHHHHHHHHHHHHHHTTBSEEEEEESS-TTTTSSSSSTT
T ss_pred CCceEEEEecCCc--hhHHHHHHHHHHHHHHHcCCcEEEEeccchhhhhhccCCCC
Confidence 6889998887643 234555788888877754 3699999999998888766443
No 10
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=68.27 E-value=7.1 Score=38.75 Aligned_cols=72 Identities=18% Similarity=0.318 Sum_probs=50.3
Q ss_pred CCceEEEE-EccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCcccc-CCcccCChHHHHHHHHHHHHHhc
Q 011304 308 KKRNVAIV-TTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERV 384 (489)
Q Consensus 308 ~~R~IaIV-TTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVY-pn~tF~sPeEQE~yIR~Wl~eR~ 384 (489)
.+++|.|| -|..-| ....+-.|+..+.-++.. -++||+|+|||+=+-|...+ |.-.+. -.++.+.| +.+
T Consensus 46 ~g~~v~iv~~s~~~~--~~~~l~el~~~~~a~r~~ga~~i~~v~PYl~Y~RqDr~~~~ge~is-----~~~~a~ll-~~~ 117 (308)
T TIGR01251 46 RGKDVFIIQQSTSAP--VNDNLMELLIMIDALKRASAKSITAVIPYYGYARQDKKFKSREPIS-----AKLVANLL-ETA 117 (308)
T ss_pred CCCeEEEEeCCCCCC--ccHHHHHHHHHHHHHHHcCCCeEEEEEEecccchhccccCCCCCch-----HHHHHHHH-HHc
Confidence 35789998 775544 355666888888777654 46899999999988888764 432232 45777888 446
Q ss_pred CCC
Q 011304 385 GFK 387 (489)
Q Consensus 385 Gf~ 387 (489)
|+.
T Consensus 118 g~d 120 (308)
T TIGR01251 118 GAD 120 (308)
T ss_pred CCC
Confidence 664
No 11
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=66.77 E-value=8.3 Score=39.02 Aligned_cols=72 Identities=15% Similarity=0.269 Sum_probs=51.3
Q ss_pred CCceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCcccc-CC-cccCChHHHHHHHHHHHHHhc
Q 011304 308 KKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVY-PN-VTFCSPEEQENYMRNWLEERV 384 (489)
Q Consensus 308 ~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVY-pn-~tF~sPeEQE~yIR~Wl~eR~ 384 (489)
.+++|.||-|.+.| .-..+-.||..+.-+|.. -.+||+|+|||+=+.|...+ +. ..+. -.++.+.| +.+
T Consensus 52 ~g~~V~iiqs~~~p--~nd~lmeLl~~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~~~~is-----ak~va~ll-~~~ 123 (319)
T PRK04923 52 RRQEVFVIQPTCAP--SAENLMELLVLIDALKRASAASVTAVIPYFGYSRQDRRMRSSRVPIT-----AKVAAKMI-SAM 123 (319)
T ss_pred CCCeEEEEecCCCC--CchHHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccCCCCCcc-----HHHHHHHH-Hhc
Confidence 36899999887766 344566888888887654 46899999999998888765 32 2222 45777777 446
Q ss_pred CCC
Q 011304 385 GFK 387 (489)
Q Consensus 385 Gf~ 387 (489)
|+.
T Consensus 124 g~d 126 (319)
T PRK04923 124 GAD 126 (319)
T ss_pred CCC
Confidence 664
No 12
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=65.39 E-value=9.7 Score=38.14 Aligned_cols=72 Identities=8% Similarity=0.141 Sum_probs=45.8
Q ss_pred CCceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCcccc-CCcccCChHHHHHHHHHHHHHhcC
Q 011304 308 KKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERVG 385 (489)
Q Consensus 308 ~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVY-pn~tF~sPeEQE~yIR~Wl~eR~G 385 (489)
.+++|.||-|-+-| ....+-.||-.+.-++.. -.+||+|+|+|+=+-|...+ |...+. -.++.+.| +.+|
T Consensus 35 ~g~~v~ii~s~~~p--~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~YaRQDr~~~~~e~is-----ak~va~lL-~~~g 106 (304)
T PRK03092 35 RGCDAFVLQSHTAP--INKWLMEQLIMIDALKRASAKRITVVLPFYPYARQDKKHRGREPIS-----ARLVADLF-KTAG 106 (304)
T ss_pred CCCEEEEEeCCCCC--CcHHHHHHHHHHHHHHHcCCCeEEEEEecccccccccccCCCCCcc-----HHHHHHHH-HhcC
Confidence 36889998875444 233444677766666554 46899999999988888765 332222 24666666 3355
Q ss_pred CC
Q 011304 386 FK 387 (489)
Q Consensus 386 f~ 387 (489)
+.
T Consensus 107 ~d 108 (304)
T PRK03092 107 AD 108 (304)
T ss_pred CC
Confidence 43
No 13
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=62.64 E-value=9.4 Score=38.24 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=47.6
Q ss_pred CCceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCcccc-CCcccCChHHHHHHHHHHHHHhcC
Q 011304 308 KKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERVG 385 (489)
Q Consensus 308 ~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVY-pn~tF~sPeEQE~yIR~Wl~eR~G 385 (489)
.+++|.||-|.+-| ....+-.|+.++.-+|.. -.+||+|+|||+=+-|...+ |.-.+. -.++.+.| +.+|
T Consensus 46 ~g~~V~ii~s~~~~--~nd~l~eLll~~~alr~~ga~~i~lViPYl~YsRQDr~~~~ge~is-----ak~~a~lL-~~~g 117 (309)
T PRK01259 46 RGKDVFIIQSTCAP--TNDNLMELLIMIDALKRASAGRITAVIPYFGYARQDRKARSRVPIT-----AKLVANLL-ETAG 117 (309)
T ss_pred CCCEEEEECCCCCC--CcHHHHHHHHHHHHHHHcCCceEEEEeeccccchhhhhhccCCCch-----HHHHHHHH-hhcC
Confidence 35789999764333 344566788888777654 45899999999998887765 332222 24666777 3355
Q ss_pred CC
Q 011304 386 FK 387 (489)
Q Consensus 386 f~ 387 (489)
+.
T Consensus 118 ~d 119 (309)
T PRK01259 118 AD 119 (309)
T ss_pred CC
Confidence 53
No 14
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=59.89 E-value=14 Score=37.10 Aligned_cols=71 Identities=11% Similarity=0.214 Sum_probs=46.3
Q ss_pred CceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCccccC-CcccCChHHHHHHHHHHHHHhcCC
Q 011304 309 KRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVYP-NVTFCSPEEQENYMRNWLEERVGF 386 (489)
Q Consensus 309 ~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVYp-n~tF~sPeEQE~yIR~Wl~eR~Gf 386 (489)
+++|.||-|.+-| .....-.||..+.-++.. -.+||+|+|||+=+-|...+- .-.+. -.++.+.| +.+|+
T Consensus 38 g~~V~iv~s~~~p--~nd~l~eLl~~~~a~r~~~a~~i~~ViPYl~YsRQDr~~~~~e~is-----ak~va~lL-~~~g~ 109 (302)
T PLN02369 38 GCDVFLVQPTCPP--ANENLMELLIMIDACRRASAKRITAVIPYFGYARADRKTQGRESIA-----AKLVANLI-TEAGA 109 (302)
T ss_pred CCeEEEEecCCCC--cchHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCch-----HHHHHHHH-HhcCC
Confidence 5789999986555 223334566666666554 358999999999888887653 22222 25677777 44666
Q ss_pred C
Q 011304 387 K 387 (489)
Q Consensus 387 ~ 387 (489)
.
T Consensus 110 d 110 (302)
T PLN02369 110 D 110 (302)
T ss_pred C
Confidence 4
No 15
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=58.37 E-value=11 Score=38.33 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=36.3
Q ss_pred CceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCcccc
Q 011304 309 KRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVY 361 (489)
Q Consensus 309 ~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVY 361 (489)
+++|.||-|.+-| ....+-.||-.+.-++.. -.+||+|+|+|+=+-|...+
T Consensus 56 g~dV~ivqs~~~p--~nd~l~eLll~~~alr~~~a~~i~~ViPYl~YaRQDr~~ 107 (332)
T PRK00553 56 NKDVVIFQSTCSP--VNDSLMELLIAIDALKRGSAKSITAILPYYGYARQDRKT 107 (332)
T ss_pred CCEEEEEcCCCCC--CchHHHHHHHHHHHHHHcCCCeEEEEeeccccchhhccc
Confidence 6889999875433 223344577776666554 46899999999988888765
No 16
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=57.76 E-value=14 Score=38.00 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=49.6
Q ss_pred CCceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCcccc-CCcccCChHHHHHHHHHHHHH---
Q 011304 308 KKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEE--- 382 (489)
Q Consensus 308 ~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVY-pn~tF~sPeEQE~yIR~Wl~e--- 382 (489)
.+++|.||-|.+-| -.+-.||.++.-++.. -.+||+|+|+|+-+-|...+ |.-.. =-.++.+.|+.
T Consensus 65 rg~~V~ivqs~~~p----d~lmELLl~~dAlr~~ga~~i~~ViPY~~YaRQDr~~~~ge~i-----sak~vA~ll~~~~~ 135 (326)
T PLN02297 65 RGQHVAFLASFSSP----AVIFEQLSVIYALPKLFVASFTLVLPFFPTGTSERVEREGDVA-----TAFTLARILSNIPI 135 (326)
T ss_pred CCCeEEEECCCCCC----hHHHHHHHHHHHHHHcCCCEEEEEeeCChhhcCCCCCCCCCCc-----hHHHHHHHHhcccc
Confidence 36899999987767 5677888888888654 46999999999988887665 33111 13456666644
Q ss_pred -hcCCC
Q 011304 383 -RVGFK 387 (489)
Q Consensus 383 -R~Gf~ 387 (489)
|+|+.
T Consensus 136 ~~~g~d 141 (326)
T PLN02297 136 SRGGPT 141 (326)
T ss_pred cccCCC
Confidence 25654
No 17
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=55.99 E-value=16 Score=37.14 Aligned_cols=72 Identities=17% Similarity=0.337 Sum_probs=47.9
Q ss_pred CCceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCcccc-CCcccCChHHHHHHHHHHHHHhcC
Q 011304 308 KKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERVG 385 (489)
Q Consensus 308 ~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVY-pn~tF~sPeEQE~yIR~Wl~eR~G 385 (489)
.+.+|.||-|.+.| .-..+-.||..+.-++.. -.+||+|+|||+=+-|...+ |.-.+. -..+.+.| +.+|
T Consensus 55 ~g~dV~ii~s~~~~--~nd~l~eLll~~~alr~~~a~~i~lViPYl~YaRQDr~~~~ge~is-----ak~~a~lL-~~~g 126 (323)
T PRK02458 55 RGDDIYIIQSTSFP--VNDHLWELLIMIDACKRASANTVNVVLPYFGYARQDRIAKPREPIT-----AKLVANML-VKAG 126 (323)
T ss_pred CCCeEEEEecCCCC--CchHHHHHHHHHHHHHHcCCceEEEEEeccccchhhcccCCCCCch-----HHHHHHHH-hhcC
Confidence 35789888775544 334455788877777654 46899999999988888765 322332 34666777 4466
Q ss_pred CC
Q 011304 386 FK 387 (489)
Q Consensus 386 f~ 387 (489)
+.
T Consensus 127 ~d 128 (323)
T PRK02458 127 VD 128 (323)
T ss_pred CC
Confidence 64
No 18
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=55.14 E-value=5.4 Score=37.36 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=26.2
Q ss_pred ccccchhhhccccCcccccCCccccCCCC
Q 011304 275 DELDLRIASVLQSTGHHYEGGFWTDFGKD 303 (489)
Q Consensus 275 d~ldlriasvlqstg~~~~~g~w~~~~~~ 303 (489)
-..|+|+.+-++..||-..||||.|++.|
T Consensus 139 ~~~d~~~~Rr~~R~~~~~~~~~w~Dp~~y 167 (187)
T cd02024 139 VPYETCKRRREARTGYVTLEGFWPDPPGY 167 (187)
T ss_pred CCHHHHHHHHHHcCCccccCcccCCCCcc
Confidence 45788999999999999999999999886
No 19
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=54.87 E-value=17 Score=36.63 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=35.7
Q ss_pred CceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCcccc
Q 011304 309 KRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVY 361 (489)
Q Consensus 309 ~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVY 361 (489)
+++|.||-|.+-| .-..+-.||-++.-+|.. -.+||+|+|||+=+-|...+
T Consensus 52 g~dV~iv~s~~~~--~nd~lmelll~~~alr~~~a~~i~~V~PYl~YaRQDr~~ 103 (320)
T PRK02269 52 GHHVFILQSTSSP--VNDNLMEILIMVDALKRASAESINVVMPYYGYARQDRKA 103 (320)
T ss_pred CCEEEEEecCCCC--ccchHHHHHHHHHHHHHhCCCeEEEEEeccccchhhccc
Confidence 5789999775544 223445677777666554 46899999999987777553
No 20
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=54.47 E-value=19 Score=35.58 Aligned_cols=66 Identities=17% Similarity=0.327 Sum_probs=43.1
Q ss_pred CceEEEEEccCCCCccccchhHHHHHHhhccC-CCccEEEEeeccCCCCCcccc-CCcccCChHHHHHHHHHHHHH
Q 011304 309 KRNVAIVTTASLPWMTGTAVNPLFRAAYLAKT-EQQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEE 382 (489)
Q Consensus 309 ~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~-g~~~VTLVVPWL~~~DQ~lVY-pn~tF~sPeEQE~yIR~Wl~e 382 (489)
+++|.|+.+.. | -...+-.||..+.-++. +-.+||+|+|||+=+.|...+ |.-.+. ..++.+.|+.
T Consensus 46 g~~v~i~~~~~-~--~~d~l~ell~~~~alr~~ga~~i~~v~PY~~YaRqDr~~~~ge~is-----ak~~a~ll~~ 113 (285)
T PRK00934 46 GEDVVIISTTY-P--QDENLVELLLLIDALRDEGAKSITLVIPYLGYARQDKRFKPGEPIS-----ARAIAKIISA 113 (285)
T ss_pred CCEEEEEeCCC-C--CcHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccccccCCCCCcc-----HHHHHHHHHH
Confidence 57898888742 1 12234456666666654 346999999999988887765 333333 3677777844
No 21
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=53.00 E-value=14 Score=39.53 Aligned_cols=72 Identities=14% Similarity=0.279 Sum_probs=48.3
Q ss_pred CCceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCcccc-CCcccCChHHHHHHHHHHHHHhcC
Q 011304 308 KKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEERVG 385 (489)
Q Consensus 308 ~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVY-pn~tF~sPeEQE~yIR~Wl~eR~G 385 (489)
.+++|.||-|-+-| .-..+-.||.++.-++.. -.+||+|+|+|.=+-|...+ |.... =-..+.+.| +.+|
T Consensus 165 rG~dV~IVqS~~~p--vNd~LmELLllidAlr~agAkrItlViPYl~YaRQDR~~~~gepI-----sak~vA~lL-~~~G 236 (439)
T PTZ00145 165 RGKDVYIIQPTCPP--VNENLIELLLMISTCRRASAKKITAVIPYYGYARQDRKLSSRVPI-----SAADVARMI-EAMG 236 (439)
T ss_pred CCCeEEEEecCCCC--CcHHHHHHHHHHHHHHHhccCeEEEEeecccchheecccCCCCCh-----hHHHHHHHH-HHcC
Confidence 36899999986554 233455688877777654 46999999999988887654 22111 134577778 4567
Q ss_pred CC
Q 011304 386 FK 387 (489)
Q Consensus 386 f~ 387 (489)
+.
T Consensus 237 ~d 238 (439)
T PTZ00145 237 VD 238 (439)
T ss_pred CC
Confidence 65
No 22
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=46.99 E-value=27 Score=35.05 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=45.9
Q ss_pred CCceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCccccC-CcccCChHHHHHHHHHHHH
Q 011304 308 KKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVYP-NVTFCSPEEQENYMRNWLE 381 (489)
Q Consensus 308 ~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVYp-n~tF~sPeEQE~yIR~Wl~ 381 (489)
.+++|.||-+.+-| -..+-.||-.+.-++.. -.+||+|+|+|.=+-|...+. .-.+.. ..+...|+
T Consensus 48 ~g~~V~ivqs~~~~---n~~l~elll~~~alr~~~a~~i~~ViPY~~YaRqDr~~~~ge~isa-----k~vA~ll~ 115 (301)
T PRK07199 48 AGRTVVLVCSLDRP---DEKLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAFHPGEAISQ-----RHFARLLS 115 (301)
T ss_pred CCCEEEEECCCCCC---cHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCccH-----HHHHHHHH
Confidence 36789999886655 44455677766666554 358999999999988887764 344442 46777774
No 23
>PF08824 Serine_rich: Serine rich protein interaction domain; InterPro: IPR014928 This is a serine rich protein that is found in the docking protein p130(cas) (Crk-associated substrate). The protein folds into a four helix bundle which is associated with protein-protein interactions []. ; PDB: 2L81_A 1Z23_A.
Probab=44.91 E-value=17 Score=34.22 Aligned_cols=86 Identities=22% Similarity=0.441 Sum_probs=55.4
Q ss_pred CcchhhhhhhhHHhhcchhhhHHHHHHhhhhhhhhhhhhhHHHHHHHhhcCC-CCCchhhhHHHhhchhhhhhhhhcCch
Q 011304 11 SKAFSFISRSWREVRDSADADIQLMKNRANSFKNLATSFDRELENFLNSANR-SSAPAEIDFVKKLQPKISEFRRVYSAP 89 (489)
Q Consensus 11 ~~afsf~skg~revrdsa~adl~lmr~ra~s~~~la~~~drele~~~~sas~-~~~~~e~~f~~~lqpki~e~rr~ys~~ 89 (489)
++=++|.|.+||- +++-+..+..+|.-++.++. ++ +|+-+|-..|.. ++-..+-.+-.+|++-+..++..|..=
T Consensus 22 s~L~~fvs~~WR~-~~~le~~i~~Ir~a~~~v~~---sl-~~fl~FArga~~NA~~~~D~~L~~kL~~qLq~l~ds~qiL 96 (159)
T PF08824_consen 22 SNLMSFVSSNWRS-PESLERHINEIRAAVDRVRA---SL-REFLDFARGALANASNLSDRNLQAKLRRQLQPLEDSYQIL 96 (159)
T ss_dssp HHHHHHHCSSTT--CCCHHTTCCHHHHHHHHHHH---HH-HHHHHHHHHHHCCHTTTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCC-hHHHhhhHHHHHHHHHHHHH---HH-HHHHHHHhHHHHHHccccchhHHHHHHHHHHHHHHHHHHH
Confidence 3457899999998 78888888888887755543 33 566666443333 345567777778888777777776655
Q ss_pred hhhHHHhh--hcCC
Q 011304 90 EISKRVLE--KWGP 101 (489)
Q Consensus 90 ~~~~~vl~--~w~~ 101 (489)
-=.+..|| +|..
T Consensus 97 ~~~~q~Ld~~~Wsl 110 (159)
T PF08824_consen 97 LQTSQALDSCNWSL 110 (159)
T ss_dssp HHHHHHHHHTTTSH
T ss_pred HHHHHHHHcCCCCH
Confidence 44455565 5643
No 24
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=33.85 E-value=6.9 Score=42.14 Aligned_cols=99 Identities=28% Similarity=0.378 Sum_probs=60.6
Q ss_pred ccccchhHHHHHHhhccCCCccEEEEeeccCCCCCccc--cCCcccCChHHHH--------HHH------HHHHHHhcCC
Q 011304 323 MTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELV--YPNVTFCSPEEQE--------NYM------RNWLEERVGF 386 (489)
Q Consensus 323 MTGTAVNPLlRAAYLAr~g~~~VTLVVPWL~~~DQ~lV--Ypn~tF~sPeEQE--------~yI------R~Wl~eR~Gf 386 (489)
|-|+|..= |--||+.|-..|.+++|||++...++. ++++.+...+.++ +|= -.|+ +-|
T Consensus 101 mGGqAgim---An~la~lg~~~vV~~~p~lsk~qa~lf~~~~~i~~P~~e~g~l~l~~p~e~~~~~d~~~IH~I---~Ey 174 (463)
T PRK03979 101 MGGQAGII---SNLLAILDLKKVIAYTPWLSKKQAEMFVDSDNLLYPVVENGKLVLKKPREAYKPNDPLKINRI---FEF 174 (463)
T ss_pred eCChHHHH---HHHHHhcCCceEEEeCCCCCHHHHHHhCCCCCeeeccccCCceeeccchhhccCCCCcceEEE---EEe
Confidence 67887643 445667777789999999997655544 4456655433322 220 1222 235
Q ss_pred CCCceEeeecCCccCCC--c----------ceeecCcccccCCC--CCCcEEEec
Q 011304 387 KADFKISFYPGKFSKER--R----------SIIPAGDTSQFIPS--KDADIAILE 427 (489)
Q Consensus 387 ~~~fkI~FYPgry~~~~--~----------SI~P~GDit~~IP~--~eADVaILE 427 (489)
+.++++.++-|.|.... | .|.-+.++..+++. ..+|++||-
T Consensus 175 ~~G~~~~l~~~~~~aPRaNRfI~s~D~~n~~l~~~eef~~~L~ei~~~~D~avlS 229 (463)
T PRK03979 175 KKGLEFKLGGEKIIVPRSNRFIVSSRPEWLRIEIKDELKEFLPEIGKMVDGAILS 229 (463)
T ss_pred CCCCEEEecCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEe
Confidence 67777777766665433 2 23345566667777 788988874
No 25
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=31.88 E-value=96 Score=29.75 Aligned_cols=92 Identities=21% Similarity=0.360 Sum_probs=64.1
Q ss_pred cccc---cccCcchhHHHHHHHH-HHHHHhhchhhhhHhcCCCchhHHHHHHhhhhhhccCCCCCCCCCCCChHHHHHHH
Q 011304 147 LWGE---REVGEWEPIRTLKMRL-REFERKRELSVEEIFGGFKSSDFVEKVKSSWKAICKEPEESKDVPPLDPTELLAHL 222 (489)
Q Consensus 147 ~w~~---~~~~ewe~ir~~k~~l-~e~e~r~~~~~~e~~~gf~~~efvek~k~slk~~~~~~~~skevppld~~ella~l 222 (489)
.|+. +..+||..+|.-+.-- ..+|.-+..- =++|+..++..|..++ +..++||-+=.++|+-|
T Consensus 38 rWK~~Ak~~GDDWDk~RaA~~laggg~e~v~~~~---------l~~f~~Q~~~tmeel~----~~~~~~~~~k~~~LasL 104 (165)
T PF08822_consen 38 RWKREAKAKGDDWDKARAAHTLAGGGIEDVARQM---------LEDFVVQYQATMEELK----ENEDMPPQEKVELLASL 104 (165)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCcHHHHHHHH---------HHHHHHHHHHHHHHHh----cccCCCHHHHHHHHHHH
Confidence 4555 3789999999776521 1122222221 1568888888888777 66789999999999887
Q ss_pred H----------HhhcccccccccchhhhHHHHHHHhhhh
Q 011304 223 V----------RQSGPFLDHLGVKRDLCDKIVESLCSKR 251 (489)
Q Consensus 223 v----------rqs~p~ldqlgvrrd~cdk~ve~l~~k~ 251 (489)
- |+--|=.+.|+|=.++..++.+-+..+-
T Consensus 105 aDsf~K~vaaskr~lPets~LavA~~vl~~l~~fv~e~~ 143 (165)
T PF08822_consen 105 ADSFSKMVAASKRVLPETSELAVAMEVLELLAAFVQERY 143 (165)
T ss_pred HHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 3 6677888999988888887776665433
No 26
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=29.47 E-value=4.3e+02 Score=23.95 Aligned_cols=42 Identities=17% Similarity=-0.054 Sum_probs=32.5
Q ss_pred eEEEEEccCCC-CccccchhHHHHHHhhccCCCccEEEEeeccC
Q 011304 311 NVAIVTTASLP-WMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLC 353 (489)
Q Consensus 311 ~IaIVTTASLP-WMTGTAVNPLlRAAYLAr~g~~~VTLVVPWL~ 353 (489)
+|+|+++-..| +++|+..--.-=|-+|++.+. .|+++++--.
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~-~v~~~~~~~~ 43 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDP-EEVLLLLPGA 43 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCC-ceEEEEecCc
Confidence 58899999999 999998776666777887665 7777776543
No 27
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=27.06 E-value=23 Score=33.22 Aligned_cols=61 Identities=16% Similarity=0.352 Sum_probs=47.0
Q ss_pred CchhHHHHHHhhhhhhccCCCCCCCCCCCChHHHHHHHHH---hhcccccccccchhhhHHHHHHHhh
Q 011304 185 KSSDFVEKVKSSWKAICKEPEESKDVPPLDPTELLAHLVR---QSGPFLDHLGVKRDLCDKIVESLCS 249 (489)
Q Consensus 185 ~~~efvek~k~slk~~~~~~~~skevppld~~ella~lvr---qs~p~ldqlgvrrd~cdk~ve~l~~ 249 (489)
||.||+++++..|++.++..++.+++ +.|+|.+|+- +--+--|=+|=-+.-||.+++.+-.
T Consensus 5 kN~~y~~~l~~~L~~~~~~e~~~e~~----L~eil~~LleaQk~G~tA~~lfG~P~~~a~eli~~~~k 68 (206)
T PF06570_consen 5 KNQEYIFDLRKYLRSSGVSEEEIEEL----LEEILPHLLEAQKKGKTARQLFGDPKEYADELIKPLPK 68 (206)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHH----HHHHHHHHHHHHhCCCcHHHHcCCHHHHHHHHhccccC
Confidence 57999999999999888877777765 7888888873 3334556677667889998887754
No 28
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=25.97 E-value=63 Score=35.36 Aligned_cols=148 Identities=20% Similarity=0.260 Sum_probs=80.9
Q ss_pred cccccccccc---------ccCcchhHHHHHHHHH-----HHH--------------------HhhchhhhhHhcCCCch
Q 011304 142 VGFRELWGER---------EVGEWEPIRTLKMRLR-----EFE--------------------RKRELSVEEIFGGFKSS 187 (489)
Q Consensus 142 ~~~r~~w~~~---------~~~ewe~ir~~k~~l~-----e~e--------------------~r~~~~~~e~~~gf~~~ 187 (489)
|.+ +.|++. +++-||-+|.||++++ -|= +++.-.+-++|.-|-.-
T Consensus 43 ~sl-E~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAl 121 (472)
T COG5016 43 WSL-EVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDAL 121 (472)
T ss_pred eEE-EecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhc
Confidence 344 789985 8899999999998543 222 22222222444444443
Q ss_pred hHHHHHHhhhhhhccCCCC-----CCCCCCCChHHHHHHHHHhhccc-ccccccc-------hhhhHHHHHHHhhhhhhh
Q 011304 188 DFVEKVKSSWKAICKEPEE-----SKDVPPLDPTELLAHLVRQSGPF-LDHLGVK-------RDLCDKIVESLCSKRKEQ 254 (489)
Q Consensus 188 efvek~k~slk~~~~~~~~-----skevppld~~ella~lvrqs~p~-ldqlgvr-------rd~cdk~ve~l~~k~~~~ 254 (489)
.=+.+++.|+|...+---. |-..+|..--|..-.+.+|-.-+ .|-+.|+ --.|-.+|..|-..-.=.
T Consensus 122 ND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~p 201 (472)
T COG5016 122 NDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVP 201 (472)
T ss_pred cchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCe
Confidence 3345667777776643221 33478877666655555552110 1333332 224556666665544434
Q ss_pred hhhhhcccCCCc----cccccCCCccccchhhhccccCcc
Q 011304 255 LLLRSIAGGECS----VLENDNINDELDLRIASVLQSTGH 290 (489)
Q Consensus 255 ~~~~~~s~~~~~----~~~~~~~~d~ldlriasvlqstg~ 290 (489)
..+|+-..+.-+ +-.-+.-.|-+|.=|+|+-.-|+|
T Consensus 202 v~lHtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S~gtsq 241 (472)
T COG5016 202 VELHTHATSGMAEMTYLKAVEAGVDGIDTAISPLSGGTSQ 241 (472)
T ss_pred eEEecccccchHHHHHHHHHHhCcchhhhhhccccCCCCC
Confidence 444443332222 333466678888888886544443
No 29
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=25.69 E-value=1.1e+02 Score=32.37 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=45.9
Q ss_pred CCceEEEEEccC--------------CCCccccchhHHHHHHhhccCCCccEEEEeeccCCCCCccccCCcccCChHHHH
Q 011304 308 KKRNVAIVTTAS--------------LPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQE 373 (489)
Q Consensus 308 ~~R~IaIVTTAS--------------LPWMTGTAVNPLlRAAYLAr~g~~~VTLVVPWL~~~DQ~lVYpn~tF~sPeEQE 373 (489)
.+++|.||-|.+ .| .-..+-.||.++.-++.+-.+||+|+|||+=+-|...-|...+. .
T Consensus 76 rg~dV~ivqs~~~~~v~~~~~~~~~~~p--~nd~lmeLll~idalragA~rIt~ViPY~~YaRQDr~~~~e~it-----a 148 (382)
T PRK06827 76 RGKDIYILQDVGNYSVTYNMFGEKNHMS--PDDHFQDLKRTIDAIRGKARRITVIMPFLYESRQHKRKGRESLD-----C 148 (382)
T ss_pred CCCeEEEEecCCcccccccccccccCCC--CcHHHHHHHHHHHHHhcCCCeEEEEeecccccccccccCCCCcc-----H
Confidence 357888887733 12 12234467777777774456999999999987777654442222 3
Q ss_pred HHHHHHHHHhcCCC
Q 011304 374 NYMRNWLEERVGFK 387 (489)
Q Consensus 374 ~yIR~Wl~eR~Gf~ 387 (489)
..+.+.| +.+|+.
T Consensus 149 k~vA~lL-~~~G~d 161 (382)
T PRK06827 149 ALALQEL-EELGVD 161 (382)
T ss_pred HHHHHHH-HHcCCC
Confidence 4677777 446664
No 30
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=24.87 E-value=1.9e+02 Score=30.57 Aligned_cols=77 Identities=25% Similarity=0.394 Sum_probs=47.3
Q ss_pred CCCCCceEEEEEccCCCCccccchhHHHHHHhhccCCCccEEEEeeccCCCCCccccCCcccCChHHHHHHHHHHHHHhc
Q 011304 305 LSDKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERV 384 (489)
Q Consensus 305 l~d~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g~~~VTLVVPWL~~~DQ~lVYpn~tF~sPeEQE~yIR~Wl~eR~ 384 (489)
+..-+++|.|.| |++.-+ .+++.|.-.|..+.-+|++|+|- ..|+..++ .....|++.=+ +
T Consensus 327 I~~A~~~I~I~t----pYfip~--~~i~~aL~~Aa~rGV~Vril~p~--~~d~~~~~--------~~~~~~~~~L~-~-- 387 (483)
T PRK01642 327 IYSARERLWITT----PYFVPD--EDLLAALKTAALRGVDVRIIIPS--KNDSLLVF--------WASRAFFTELL-E-- 387 (483)
T ss_pred HHHhccEEEEEc----CCcCCC--HHHHHHHHHHHHcCCEEEEEeCC--CCCcHHHH--------HHHHHHHHHHH-H--
Confidence 344578899988 444322 47888887776666799999995 44554332 22344554433 2
Q ss_pred CCCCCceEeeecCCccCCC
Q 011304 385 GFKADFKISFYPGKFSKER 403 (489)
Q Consensus 385 Gf~~~fkI~FYPgry~~~~ 403 (489)
...+|..|.+.|-+.|
T Consensus 388 ---~Gv~I~~y~~~~~HaK 403 (483)
T PRK01642 388 ---AGVKIYRYEGGLLHTK 403 (483)
T ss_pred ---cCCEEEEeCCCceEeE
Confidence 4578888866554444
No 31
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=22.27 E-value=76 Score=26.78 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=33.9
Q ss_pred CCCceEEEEEccCCCCccccchhHHHHHHhhccCCCccEEEE-eeccCCCCCcc
Q 011304 307 DKKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLL-VPWLCKSDQEL 359 (489)
Q Consensus 307 d~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g~~~VTLV-VPWL~~~DQ~l 359 (489)
.++.+|+|||+ |+.++..+.||-.-+...-+|+++ ++|+.|-|.+.
T Consensus 7 ~~g~di~iia~-------G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~ 53 (124)
T PF02780_consen 7 REGADITIIAY-------GSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEA 53 (124)
T ss_dssp ESSSSEEEEEE-------TTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHH
T ss_pred eCCCCEEEEee-------hHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccc
Confidence 45789999995 889999999997655444466665 67777766543
No 32
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=20.60 E-value=54 Score=29.52 Aligned_cols=20 Identities=20% Similarity=0.497 Sum_probs=14.9
Q ss_pred CCceEeeecCCccCCCccee
Q 011304 388 ADFKISFYPGKFSKERRSII 407 (489)
Q Consensus 388 ~~fkI~FYPgry~~~~~SI~ 407 (489)
..+-+.||||.|....-+.|
T Consensus 92 ~~plv~FyPG~y~g~~l~lf 111 (126)
T PF08747_consen 92 NVPLVVFYPGEYDGNSLRLF 111 (126)
T ss_pred CCeEEEECCceecCceeEec
Confidence 55689999999995555544
Done!