Query 011304
Match_columns 489
No_of_seqs 65 out of 67
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 05:23:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lrt_A Ribose-phosphate pyroph 57.0 6.1 0.00021 37.9 3.0 67 309-382 45-113 (286)
2 3s5j_B Ribose-phosphate pyroph 53.3 10 0.00035 37.3 3.9 51 309-361 50-101 (326)
3 2ji4_A Phosphoribosyl pyrophos 52.1 9.6 0.00033 37.8 3.6 71 308-386 78-149 (379)
4 3dah_A Ribose-phosphate pyroph 45.9 11 0.00039 36.7 3.0 71 309-387 54-127 (319)
5 1u9y_A RPPK;, ribose-phosphate 45.2 16 0.00054 34.6 3.7 67 309-383 47-115 (284)
6 1dku_A Protein (phosphoribosyl 25.6 87 0.003 30.1 5.4 70 309-386 56-127 (317)
7 2xvc_A ESCRT-III, SSO0910; cel 25.5 54 0.0019 26.0 3.2 34 216-250 13-52 (59)
8 3fro_A GLGA glycogen synthase; 21.5 84 0.0029 28.2 4.1 45 310-355 3-48 (439)
9 2wnw_A Activated by transcript 20.8 1.3E+02 0.0043 30.1 5.6 70 325-397 159-240 (447)
10 2gek_A Phosphatidylinositol ma 19.2 88 0.003 27.9 3.7 45 308-353 19-63 (406)
No 1
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP analog binding, ATP-binding, metal-binding, nucleotide biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium} PDB: 3lpn_A* 3nag_A* 3mbi_A*
Probab=57.03 E-value=6.1 Score=37.90 Aligned_cols=67 Identities=9% Similarity=0.128 Sum_probs=43.8
Q ss_pred CceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCcccc-CCcccCChHHHHHHHHHHHHH
Q 011304 309 KRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWLEE 382 (489)
Q Consensus 309 ~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVY-pn~tF~sPeEQE~yIR~Wl~e 382 (489)
+++|.||-|.+-| .-...-.||..+.-++.. -++||+|+|++.-+-|.... |...+. -.++.+.|..
T Consensus 45 g~dV~iiqs~~~p--~nd~lmeLl~~ida~k~~~A~~it~ViPY~~YaRQDr~~~~~e~is-----ak~vA~ll~~ 113 (286)
T 3lrt_A 45 LTGHNIFIIGNTH--SDAEVMEMILTLSAIQDYRTKSVNIIAPYYGYARQHQRYKNGEPIS-----SQILTEIYSS 113 (286)
T ss_dssp CTTSEEEEECCCC--SHHHHHHHHHHHHHGGGSCCSEEEEEESSCTTTTCCSCSSTTCCCH-----HHHHHHHHHH
T ss_pred CCcEEEEEeCCCC--CcHHHHHHHHHHHHHHHcCCCEEEEEecCcccccCcccCCCCCccc-----HHHHHHHHHH
Confidence 7899998876544 122333577777777765 36999999999987777654 332221 3456666643
No 2
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=53.33 E-value=10 Score=37.25 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=36.9
Q ss_pred CceEEEEEccCCCCccccchhHHHHHHhhccC-CCccEEEEeeccCCCCCcccc
Q 011304 309 KRNVAIVTTASLPWMTGTAVNPLFRAAYLAKT-EQQNVTLLVPWLCKSDQELVY 361 (489)
Q Consensus 309 ~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~-g~~~VTLVVPWL~~~DQ~lVY 361 (489)
+++|.||-|.+-| +-...-.||..+.-++. +-++||+|+|++.-+-|....
T Consensus 50 g~dV~iiqs~~~p--~nd~lmeLl~~idA~k~asA~rIt~ViPY~~YaRQDr~~ 101 (326)
T 3s5j_B 50 GEDVYIVQSGCGE--INDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKD 101 (326)
T ss_dssp TCEEEEECCCCSC--HHHHHHHHHHHHHHHHHTTCSEEEEEESSCTTTTCCSCT
T ss_pred CCcEEEEecCCCC--ccHHHHHHHHHHHHHHhcCCcEEEEeccCccccccCCcC
Confidence 6899999886544 22234467888777764 447999999999987776544
No 3
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=52.11 E-value=9.6 Score=37.80 Aligned_cols=71 Identities=18% Similarity=0.293 Sum_probs=43.5
Q ss_pred CCceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCccccCCcccCChHHHHHHHHHHHHHhcCC
Q 011304 308 KKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEERVGF 386 (489)
Q Consensus 308 ~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVYpn~tF~sPeEQE~yIR~Wl~eR~Gf 386 (489)
.+++|.||-|.+=| ....+-.||..+.-++.. -.+||+|||++.-+-|....+...+ -...|.+-|. .+|.
T Consensus 78 rg~dV~iiqs~~~~--~nd~lmeLl~~idA~k~asA~rit~ViPY~~YaRQdr~~~r~~i-----~ak~vA~lL~-~aGa 149 (379)
T 2ji4_A 78 RGKDVFIIQTVSKD--VNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSI-----VSKLLASMMC-KAGL 149 (379)
T ss_dssp TTCEEEEECCCCSC--HHHHHHHHHHHHHHHHHTTCSEEEEECSSCSSCCC-------CC-----HHHHHHHHHH-HTTC
T ss_pred CCCEEEEEeCCCCC--ccHHHHHHHHHHHHHHhcCCceEEEEEeccCccccccccCCCcH-----HHHHHHHHHH-HcCC
Confidence 36899999875433 122333788888887654 4689999999999888775443111 1345677773 4665
No 4
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=45.90 E-value=11 Score=36.68 Aligned_cols=71 Identities=18% Similarity=0.269 Sum_probs=45.0
Q ss_pred CceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCcccc-C-CcccCChHHHHHHHHHHHHHhcC
Q 011304 309 KRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVY-P-NVTFCSPEEQENYMRNWLEERVG 385 (489)
Q Consensus 309 ~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVY-p-n~tF~sPeEQE~yIR~Wl~eR~G 385 (489)
+++|.||-+.+-| .-...-.||..+.-++.. -++||+|+|+++-+-|.... | ...+. -..+.+-| +.+|
T Consensus 54 g~dV~iiqs~~~p--~nd~lmeLl~~idA~k~asA~rIt~ViPY~~YaRQDr~~~~~r~pis-----ak~vA~ll-~~~G 125 (319)
T 3dah_A 54 GKDVFVLQSTCAP--TNDNLMELMIMVDALKRASAGRITAAIPYFGYARQDRRPRSARVAIS-----AKVVANML-EIAG 125 (319)
T ss_dssp TCEEEEECCCCSS--HHHHHHHHHHHHHHHHHTTBSEEEEEESSCTTTTCCSCCTTCCCCCH-----HHHHHHHH-HHHT
T ss_pred CCeEEEEccCCCC--CcHHHHHHHHHHHHHHHcCCcEEEEEccCccccccccccCCCCCCcc-----HHHHHHHH-HhcC
Confidence 6899999665544 122333588888777554 46999999999988777654 4 32221 34566666 3356
Q ss_pred CC
Q 011304 386 FK 387 (489)
Q Consensus 386 f~ 387 (489)
+.
T Consensus 126 ~d 127 (319)
T 3dah_A 126 VE 127 (319)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 5
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Probab=45.19 E-value=16 Score=34.58 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=49.0
Q ss_pred CceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCccccC-CcccCChHHHHHHHHHHHHHh
Q 011304 309 KRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVYP-NVTFCSPEEQENYMRNWLEER 383 (489)
Q Consensus 309 ~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVYp-n~tF~sPeEQE~yIR~Wl~eR 383 (489)
+++|.|+-|.+-| -...-.||..+.-++.. -.+||+|+|++.-+-|...+- ...+ --.++.++|..-
T Consensus 47 g~dv~iiqs~~~p---n~~lmell~~~~a~~~~~a~~i~~v~Py~~yaRqdr~~~~~~~i-----~ak~vA~ll~~~ 115 (284)
T 1u9y_A 47 DDEAVIINTQKNQ---NDAIVETILLCDALRDEGVKKITLVAPYLAYARQDKKFNPGEAI-----SIRALAKIYSNI 115 (284)
T ss_dssp SSEEEEECCCSSH---HHHHHHHHHHHHHHHTTTCCEEEEECSSCTTCSCSSCSSTTBCC-----HHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCC---cHHHHHHHHHHHHHHHcCCceEEEEecccccceeeccccCCCch-----HHHHHHHHHhhc
Confidence 6899999876655 44566788888888754 469999999999888876543 2222 356888898664
No 6
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Probab=25.64 E-value=87 Score=30.09 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=47.2
Q ss_pred CceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCccccCCcccCChHHH-HHHHHHHHHHhcCC
Q 011304 309 KRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVYPNVTFCSPEEQ-ENYMRNWLEERVGF 386 (489)
Q Consensus 309 ~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVYpn~tF~sPeEQ-E~yIR~Wl~eR~Gf 386 (489)
+++|.||-|.+-| .-..+-.||..+.-++.. -.+||.|+|++....|..-|.+ -+.- -.++.+||.. +|.
T Consensus 56 g~dv~iiqs~~~~--~nd~lmell~~~~a~~~~~a~~i~av~pY~~yaRqd~K~~~-----r~~i~a~~~a~ll~~-~g~ 127 (317)
T 1dku_A 56 GCDCYIIQSTSDP--VNEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARS-----REPITAKLFANLLET-AGA 127 (317)
T ss_dssp TCEEEEECCCCSS--HHHHHHHHHHHHHHHHHTTCSEEEEEESSCTTTTCCSCSST-----TCCCHHHHHHHHHHH-HTC
T ss_pred CCEEEEEcCCCCC--CcHHHHHHHHHHHHhhccCcceEEEEEEcchHhhhhhhhcC-----CCchHHHHHHHHHHH-cCC
Confidence 6899999875432 112233788877777644 4699999999999888655421 1222 5788899954 554
No 7
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=25.48 E-value=54 Score=26.02 Aligned_cols=34 Identities=38% Similarity=0.561 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhccccc------ccccchhhhHHHHHHHhhh
Q 011304 216 TELLAHLVRQSGPFLD------HLGVKRDLCDKIVESLCSK 250 (489)
Q Consensus 216 ~ella~lvrqs~p~ld------qlgvrrd~cdk~ve~l~~k 250 (489)
.+||+| +|+||-||| .+||.||..-++...|-+|
T Consensus 13 ~~lL~y-Ir~sGGildI~~~a~kygV~kdeV~~~LrrLe~K 52 (59)
T 2xvc_A 13 RELLDY-IVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNK 52 (59)
T ss_dssp HHHHHH-HHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 467777 578888998 5899888766666666544
No 8
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=21.46 E-value=84 Score=28.19 Aligned_cols=45 Identities=20% Similarity=0.130 Sum_probs=34.2
Q ss_pred ceEEEEEccCCC-CccccchhHHHHHHhhccCCCccEEEEeeccCCC
Q 011304 310 RNVAIVTTASLP-WMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLCKS 355 (489)
Q Consensus 310 R~IaIVTTASLP-WMTGTAVNPLlRAAYLAr~g~~~VTLVVPWL~~~ 355 (489)
-+|++||+-..| -..|.+.--.-=|.+|++.|. +|+++.|.-...
T Consensus 3 MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~-~V~v~~~~~~~~ 48 (439)
T 3fro_A 3 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGH-EVLVFTPSHGRF 48 (439)
T ss_dssp CEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTC-EEEEEEECTTCS
T ss_pred eEEEEEecccCCcccCCHHHHHHHHHHHHHHCCC-eEEEEecCCCCc
Confidence 479999998888 566666655556778888875 999999875543
No 9
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp}
Probab=20.76 E-value=1.3e+02 Score=30.14 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=43.9
Q ss_pred ccchhHHHH---HHhhccC------CCccEEEEeeccCCCCCccccCCcccCChHHHHHHHHHHHHH---hcCCCCCceE
Q 011304 325 GTAVNPLFR---AAYLAKT------EQQNVTLLVPWLCKSDQELVYPNVTFCSPEEQENYMRNWLEE---RVGFKADFKI 392 (489)
Q Consensus 325 GTAVNPLlR---AAYLAr~------g~~~VTLVVPWL~~~DQ~lVYpn~tF~sPeEQE~yIR~Wl~e---R~Gf~~~fkI 392 (489)
|...+|=.. |.||++- ..=.|..|-|+=||.-- .-||.+.| +|++|..||++-|.. +.|+. +.+|
T Consensus 159 gg~L~~~~y~~yA~Ylvk~i~~y~~~Gi~i~~is~qNEP~~~-~~~~s~~~-t~~~~~~fik~~L~p~l~~~gl~-~~kI 235 (447)
T 2wnw_A 159 GGKLRRECYADWADIIINYLLEYRRHGINVQALSVQNEPVAV-KTWDSCLY-SVEEETAFAVQYLRPRLARQGMD-EMEI 235 (447)
T ss_dssp CCBBCGGGHHHHHHHHHHHHHHHHHTTCCCCEEESCSSTTCC-CSSBCCBC-CHHHHHHHHHHTHHHHHHHTTCT-TCEE
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCeeEEeeeccCCCC-CCCCcCCC-CHHHHHHHHHHHHHHHHHhcCCC-CceE
Confidence 555555444 4566542 12278999999887321 23777554 799999999876643 34663 5677
Q ss_pred eeecC
Q 011304 393 SFYPG 397 (489)
Q Consensus 393 ~FYPg 397 (489)
.-+..
T Consensus 236 ~~~D~ 240 (447)
T 2wnw_A 236 YIWDH 240 (447)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 76554
No 10
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=19.22 E-value=88 Score=27.92 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=33.5
Q ss_pred CCceEEEEEccCCCCccccchhHHHHHHhhccCCCccEEEEeeccC
Q 011304 308 KKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTEQQNVTLLVPWLC 353 (489)
Q Consensus 308 ~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g~~~VTLVVPWL~ 353 (489)
+.-+|++|++...|...|...--+--|.+|++.|. +|+++.+--.
T Consensus 19 ~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~-~V~v~~~~~~ 63 (406)
T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGH-EVSVLAPASP 63 (406)
T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTC-EEEEEESCCT
T ss_pred CcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCC-eEEEEecCCc
Confidence 35689999987778878876666667778888765 8999887543
Done!