Query 011304
Match_columns 489
No_of_seqs 65 out of 67
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 05:23:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011304.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011304hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c4ka1 c.61.1.2 (A:7-166) PRP 67.2 2.1 0.00015 36.1 3.8 52 308-361 50-102 (160)
2 d1dkua1 c.61.1.2 (A:8-166) Pho 63.7 2 0.00014 36.2 2.9 52 308-361 47-99 (159)
3 d1u9ya1 c.61.1.2 (A:1-155) Pho 55.3 4.7 0.00034 33.7 3.9 65 308-380 46-112 (155)
4 d1vgya2 d.58.19.1 (A:181-293) 41.3 2.7 0.0002 32.2 0.1 73 318-394 16-108 (113)
5 d1ysja2 d.58.19.1 (A:178-292) 37.8 14 0.001 27.8 3.8 77 318-397 16-113 (115)
6 d1no1a_ a.179.1.1 (A:) Repliso 26.1 7.3 0.00053 29.1 0.2 10 393-402 15-24 (67)
7 d1z21a1 a.243.1.2 (A:42-145) Y 25.4 6 0.00044 32.3 -0.4 39 204-262 41-79 (104)
8 d1vsra_ c.52.1.15 (A:) Very sh 18.6 14 0.0011 30.6 0.6 43 277-319 2-44 (134)
9 d1c4ka3 d.125.1.1 (A:570-730) 17.2 43 0.0031 28.5 3.3 46 215-261 3-48 (161)
10 d1pn3a_ c.87.1.5 (A:) TDP-epi- 15.0 52 0.0038 26.7 3.2 26 324-350 8-36 (391)
No 1
>d2c4ka1 c.61.1.2 (A:7-166) PRPP synthetase-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.18 E-value=2.1 Score=36.09 Aligned_cols=52 Identities=27% Similarity=0.333 Sum_probs=35.4
Q ss_pred CCceEEEEEccCCCCccccchhHHHHHHhhccC-CCccEEEEeeccCCCCCcccc
Q 011304 308 KKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKT-EQQNVTLLVPWLCKSDQELVY 361 (489)
Q Consensus 308 ~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~-g~~~VTLVVPWL~~~DQ~lVY 361 (489)
.+++|.||.|..-| .-..+-.||-++.-++. +-.+||+|+|+++=+-|...+
T Consensus 50 rg~~V~ivqs~~~~--~n~~lmeLll~~da~k~~~a~~It~ViPY~~YaRQDk~~ 102 (160)
T d2c4ka1 50 RGQDIFIIQTIPRD--VNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMR 102 (160)
T ss_dssp TTCCEEEECCCCSC--HHHHHHHHHHHHHHHHHTTCSCEEEEESSCTTTTTTSCC
T ss_pred cCCceEEEeccCcc--hHHHHHHHHHHHHHHHHhCcccceeecccchhhhccccc
Confidence 36889999776543 22333455555555544 346999999999988887755
No 2
>d1dkua1 c.61.1.2 (A:8-166) Phosphoribosylpyrophosphate synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=63.67 E-value=2 Score=36.23 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCceEEEEEccCCCCccccchhHHHHHHhhccC-CCccEEEEeeccCCCCCcccc
Q 011304 308 KKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKT-EQQNVTLLVPWLCKSDQELVY 361 (489)
Q Consensus 308 ~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~-g~~~VTLVVPWL~~~DQ~lVY 361 (489)
.+++|.||-+.+-| ..-.+-.||-++.-++. +-.+||+|+|+|+=+-|...+
T Consensus 47 rg~dv~ivqs~~~~--~nd~lmelll~~~a~k~~~A~~i~~ViPY~~YsRQDr~~ 99 (159)
T d1dkua1 47 RGCDCYIIQSTSDP--VNEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKA 99 (159)
T ss_dssp TTCEEEEECCCCSS--HHHHHHHHHHHHHHHHHTTCSEEEEEESSCTTTTCCSCS
T ss_pred CCCceEEEecCCCC--cHHHHHHHHHHHHHHHHcCCcceEEeecccchhhhcccc
Confidence 36889999765432 11112234444444444 457999999999988888764
No 3
>d1u9ya1 c.61.1.2 (A:1-155) Phosphoribosylpyrophosphate synthetase {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=55.27 E-value=4.7 Score=33.73 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=39.6
Q ss_pred CCceEEEEEccCCCCccccchhHHHHHHhhccCC-CccEEEEeeccCCCCCcccc-CCcccCChHHHHHHHHHHH
Q 011304 308 KKRNVAIVTTASLPWMTGTAVNPLFRAAYLAKTE-QQNVTLLVPWLCKSDQELVY-PNVTFCSPEEQENYMRNWL 380 (489)
Q Consensus 308 ~~R~IaIVTTASLPWMTGTAVNPLlRAAYLAr~g-~~~VTLVVPWL~~~DQ~lVY-pn~tF~sPeEQE~yIR~Wl 380 (489)
.+++|.|+.|-. | .-..+-.||-.+.-++.. -.+||+|+|+++=+.|..++ |.-... -..+.+=|
T Consensus 46 rg~~vvvi~s~~-~--~~d~lmelll~~da~~~~~a~~I~~ViPY~~YaRQDr~~~~ge~iS-----ak~va~ll 112 (155)
T d1u9ya1 46 NDDEAVIINTQK-N--QNDAIVETILLCDALRDEGVKKITLVAPYLAYARQDKKFNPGEAIS-----IRALAKIY 112 (155)
T ss_dssp CSSEEEEECCCS-S--HHHHHHHHHHHHHHHHTTTCCEEEEECSSCTTCSCSSCSSTTBCCH-----HHHHHHHH
T ss_pred CCceeEEEeccc-c--cchHHHHHHHHHHHHHHhCCcceEEecccchhhccccccCCCCccc-----HHHHHHHH
Confidence 368899887621 2 111122455555555543 47999999999999998876 443332 23455655
No 4
>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]}
Probab=41.30 E-value=2.7 Score=32.16 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=39.8
Q ss_pred cCCCCccccchhHHHHHHhhcc--------CC---CccEEEEeeccCCC-CCccccCC-------cccCChHHHHHHHHH
Q 011304 318 ASLPWMTGTAVNPLFRAAYLAK--------TE---QQNVTLLVPWLCKS-DQELVYPN-------VTFCSPEEQENYMRN 378 (489)
Q Consensus 318 ASLPWMTGTAVNPLlRAAYLAr--------~g---~~~VTLVVPWL~~~-DQ~lVYpn-------~tF~sPeEQE~yIR~ 378 (489)
||.||+ ++||+.-|+.+.. .. ....++.+-=+.-. .+..|-|+ ++|. |++..+.|++
T Consensus 16 aa~P~~---g~NpI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~t~i~~G~~~~NvIP~~a~~~~~iR~~-~~~~~~~i~~ 91 (113)
T d1vgya2 16 IAYPHL---AINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNINGGTGATNVIPGELNVKFNFRFS-TESTEAGLKQ 91 (113)
T ss_dssp TTCGGG---CBCHHHHHHHHHHHHHHCCCCCCCSSCCCCEEEEEEEEECCSCTTEECSEEEEEEEEEEC-TTSCHHHHHH
T ss_pred ccCccc---CCCcHHHHHHHHHHHHhhhcccCcccCCCcEEEEEEEEecccccccCCCceEEEEEEEeC-CHHHHHHHHH
Confidence 789998 5888877776421 11 12344444444433 23345554 4443 5666667777
Q ss_pred HHHHhc-CCCCCceEee
Q 011304 379 WLEERV-GFKADFKISF 394 (489)
Q Consensus 379 Wl~eR~-Gf~~~fkI~F 394 (489)
.+++-+ .+..+++|.|
T Consensus 92 ~i~~i~~~~~~~~~i~~ 108 (113)
T d1vgya2 92 RVHAILDKHGVQYDLQW 108 (113)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHcCCeEEEEE
Confidence 776543 2334555554
No 5
>d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis [TaxId: 1423]}
Probab=37.80 E-value=14 Score=27.82 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=41.6
Q ss_pred cCCCCccccchhHHHHHHhhc--------cCC--CccEEEEeeccCCCCCccccCC-cccC-----ChHHHHHHHHHHHH
Q 011304 318 ASLPWMTGTAVNPLFRAAYLA--------KTE--QQNVTLLVPWLCKSDQELVYPN-VTFC-----SPEEQENYMRNWLE 381 (489)
Q Consensus 318 ASLPWMTGTAVNPLlRAAYLA--------r~g--~~~VTLVVPWL~~~DQ~lVYpn-~tF~-----sPeEQE~yIR~Wl~ 381 (489)
||.||. .+||+.-|+.+. +.. ....++-+-.+.-.....+-|+ ++|. .+.+....|.+.++
T Consensus 16 aa~P~~---g~nai~~a~~~i~~l~~~~~~~~~~~~~~~~~~~~i~~G~~~NvIP~~~~~~~~iR~~~~~~~~~i~~~i~ 92 (115)
T d1ysja2 16 ASIPNN---SIDPIAAAGQIISGLQSVVSRNISSLQNAVVSITRVQAGTSWNVIPDQAEMEGTVRTFQKEARQAVPEHMR 92 (115)
T ss_dssp -----C---CCCHHHHHHHHHHHHC-----------CCEEEEEEEEECSCSSSCCSEEEEEEEEECSSHHHHHHHHHHHH
T ss_pred ccCccc---CcCHHHHHHHHHHHhcccchhcccccccccceeeEEecCccccccCcceEEEEEeccCCHHHHHHHHHHHH
Confidence 578984 479999887763 111 1234555555555556677776 3332 25667677888876
Q ss_pred Hhc-----CCCCCceEeeecC
Q 011304 382 ERV-----GFKADFKISFYPG 397 (489)
Q Consensus 382 eR~-----Gf~~~fkI~FYPg 397 (489)
+-+ .+.+..+|.|+|+
T Consensus 93 ~~~~~~a~~~g~~~ei~~~~~ 113 (115)
T d1ysja2 93 RVAEGIAAGYGAQAEFKWFPY 113 (115)
T ss_dssp HHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHHHhCCEEEEEEEcC
Confidence 654 2235677777765
No 6
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=26.15 E-value=7.3 Score=29.14 Aligned_cols=10 Identities=50% Similarity=1.371 Sum_probs=8.0
Q ss_pred eeecCCccCC
Q 011304 393 SFYPGKFSKE 402 (489)
Q Consensus 393 ~FYPgry~~~ 402 (489)
-||||||..+
T Consensus 15 efypgrfqpd 24 (67)
T d1no1a_ 15 EFYPGRFQPD 24 (67)
T ss_dssp HHSTTTCCCT
T ss_pred HHCCCCCCcc
Confidence 3899999764
No 7
>d1z21a1 a.243.1.2 (A:42-145) Yop proteins translocation protein H, YscH (IcrP) {Yersinia pestis [TaxId: 632]}
Probab=25.40 E-value=6 Score=32.30 Aligned_cols=39 Identities=36% Similarity=0.590 Sum_probs=27.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHhhcccccccccchhhhHHHHHHHhhhhhhhhhhhhccc
Q 011304 204 PEESKDVPPLDPTELLAHLVRQSGPFLDHLGVKRDLCDKIVESLCSKRKEQLLLRSIAG 262 (489)
Q Consensus 204 ~~~skevppld~~ella~lvrqs~p~ldqlgvrrd~cdk~ve~l~~k~~~~~~~~~~s~ 262 (489)
-...--+||+|.|||- .+|||.-|| | +|+.+.|++.++.
T Consensus 41 g~ql~v~p~~D~pELr-a~lrEf~P~----g---------------~q~E~vLl~~l~e 79 (104)
T d1z21a1 41 QHQGSVVPAIDLPELR-SVLQQFDSF----G---------------KRWEAILLQVLEG 79 (104)
T ss_dssp TCCSCCCHHHHHHHHH-HHHHHHSCS----S---------------HHHHHHHHHHHHT
T ss_pred ccccCCCCccchHHHH-HHHHHhCcc----h---------------hHHHHHHHHHHHH
Confidence 3345568999999964 578998885 4 4556667777665
No 8
>d1vsra_ c.52.1.15 (A:) Very short patch repair (VSR) endonuclease {Escherichia coli [TaxId: 562]}
Probab=18.56 E-value=14 Score=30.60 Aligned_cols=43 Identities=21% Similarity=0.242 Sum_probs=35.8
Q ss_pred ccchhhhccccCcccccCCccccCCCCCCCCCCceEEEEEccC
Q 011304 277 LDLRIASVLQSTGHHYEGGFWTDFGKDDLSDKKRNVAIVTTAS 319 (489)
Q Consensus 277 ldlriasvlqstg~~~~~g~w~~~~~~~l~d~~R~IaIVTTAS 319 (489)
+.+.+++.|.+.||+|.-.-=.-+.+.|+--++.++||+-=-.
T Consensus 2 ~E~~lr~~L~~~G~RyR~~~k~lpG~PDiv~~~~k~aIfvdGc 44 (134)
T d1vsra_ 2 IEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGC 44 (134)
T ss_dssp CCHHHHHHHHHTTCCCEESCTTSTTCCSEEEGGGTEEEEEECT
T ss_pred HHHHHHHHHHHCCCeEEecCCCCCCCCCEeecCccEEEEEcCc
Confidence 5678899999999999887777777888888899999987543
No 9
>d1c4ka3 d.125.1.1 (A:570-730) Ornithine decarboxylase C-terminal domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Probab=17.22 E-value=43 Score=28.49 Aligned_cols=46 Identities=11% Similarity=0.185 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhhcccccccccchhhhHHHHHHHhhhhhhhhhhhhcc
Q 011304 215 PTELLAHLVRQSGPFLDHLGVKRDLCDKIVESLCSKRKEQLLLRSIA 261 (489)
Q Consensus 215 ~~ella~lvrqs~p~ldqlgvrrd~cdk~ve~l~~k~~~~~~~~~~s 261 (489)
|.+.|=.|+.++..+...+|+ ||+|+++-+.+++-.-..++.+..+
T Consensus 3 l~~vLP~l~~~~p~rY~~~~L-rdLc~~mH~~~~~~~~~~l~~~~f~ 48 (161)
T d1c4ka3 3 LKQVLPSIYAANEERYNGYTI-RELCQELHDFYKNNNTFTYQKRLFL 48 (161)
T ss_dssp HHHHCHHHHTTSTTTSTTCBH-HHHHHHHHHHHHTTTHHHHHHHTTS
T ss_pred hHHHCHHHHHhChHhHcCCCH-HHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 467777789999889999999 6999999998876444444444443
No 10
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}
Probab=15.04 E-value=52 Score=26.74 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=18.9
Q ss_pred cccc--hhHHHHHH-hhccCCCccEEEEee
Q 011304 324 TGTA--VNPLFRAA-YLAKTEQQNVTLLVP 350 (489)
Q Consensus 324 TGTA--VNPLlRAA-YLAr~g~~~VTLVVP 350 (489)
+||. |||++.-| .|++.| ++||++.|
T Consensus 8 ~gt~Ghi~P~laLA~~L~~rG-h~V~~~~~ 36 (391)
T d1pn3a_ 8 CGSRGDTEPLVALAARLRELG-ADARMCLP 36 (391)
T ss_dssp ESSHHHHHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred CCChhHHHHHHHHHHHHHHCC-CEEEEEEC
Confidence 5555 99998844 566666 59999874
Done!