BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011305
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 276 bits (705), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 152/351 (43%), Positives = 212/351 (60%), Gaps = 33/351 (9%)
Query: 165 GVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEA 224
G +N N+++ + + + + L +L I+ P+VKWE + GLE AK LKEA
Sbjct: 7 GSGSNGGNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEA 66
Query: 225 VVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG 284
V++P+K+P F G P GILL+GPPGTGK+ LAKAVATE +TFF++S+S +VSKW G
Sbjct: 67 VILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 126
Query: 285 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 344
+SEKL+K LF +AR + PS IF+D++DA+ RGE E EASRR+KTELL+QM+G+
Sbjct: 127 ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGND 184
Query: 345 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE---SLLPSQTGEESLPY 401
+ V VL ATN+PW+LD+A+ RR E+RI +PLPD AR MFE PS +E Y
Sbjct: 185 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKED--Y 242
Query: 402 DLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED---V 458
L TEGYSGSDI +V K+A MQP+R++ + DDE ++ P P D +
Sbjct: 243 RTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAI 302
Query: 459 EI----------------------ALKNTRPSAHLHA-HRYEKFNADYGSE 486
E+ A+K+TRP+ + + E+F D+G E
Sbjct: 303 EMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 272 bits (695), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 148/329 (44%), Positives = 202/329 (61%), Gaps = 33/329 (10%)
Query: 187 ETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGIL 246
+ + L +L I+ P+VKWE + GLE AK LKEAV++P+K+P F G P GIL
Sbjct: 14 DNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGIL 73
Query: 247 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIF 306
L+GPPGTGK+ LAKAVATE +TFF++S+S +VSKW G+SEKL+K LF +AR + PS IF
Sbjct: 74 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIF 133
Query: 307 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR 366
+D++DA+ RGE E EASRR+KTELL+QM+G+ + V VL ATN+PW+LD+A+ R
Sbjct: 134 IDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR 191
Query: 367 RLEKRILVPLPDTEARRAMFE---SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 423
R E+RI +PLPD AR MFE P +E Y L TEGYSGSDI +V K+A
Sbjct: 192 RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKED--YRTLGAMTEGYSGSDIAVVVKDA 249
Query: 424 AMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED---VEI-------------------- 460
MQP+R++ + DDE ++ P P D +E+
Sbjct: 250 LMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDF 309
Query: 461 --ALKNTRPSAHLHA-HRYEKFNADYGSE 486
A+K+TRP+ + + E+F D+G E
Sbjct: 310 LKAIKSTRPTVNEDDLLKQEQFTRDFGQE 338
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/319 (46%), Positives = 198/319 (62%), Gaps = 37/319 (11%)
Query: 201 RGS----PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKT 256
RGS P+VKWE + GLE AK LKEAV++P+K+P F G P GILL+GPPGTGK+
Sbjct: 15 RGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS 74
Query: 257 MLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 316
LAKAVATE +TFF++S+S +VSKW G+SEKL+K LF +AR + PS IF+DE+DA+
Sbjct: 75 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGT 134
Query: 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL 376
RGE E EASRR+KTELL+QM+G+ + V VL ATN+PW+LD+A+ RR E+RI +PL
Sbjct: 135 RGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPL 192
Query: 377 PDTEARRAMFE---SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 433
PD AR MFE P +E Y L TEGYSGSDI +V K+A MQP+R++
Sbjct: 193 PDLAARTTMFEINVGDTPCVLTKED--YRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 250
Query: 434 LLEGRQEVAPDDELPQIGPIRPED---VEI----------------------ALKNTRPS 468
+ DDE ++ P P D +E+ A+K+TRP+
Sbjct: 251 ATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPT 310
Query: 469 AHLHA-HRYEKFNADYGSE 486
+ + E+F D+G E
Sbjct: 311 VNEDDLLKQEQFTRDFGQE 329
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/317 (46%), Positives = 198/317 (62%), Gaps = 33/317 (10%)
Query: 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML 258
I+ P+VKWE + GLE AK LKEAV++P+K+P F G P GILL+GPPGTGK+ L
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67
Query: 259 AKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 318
AKAVATE +TFF++S+S +VSKW G+SEKL+K LF +AR + PS IF+D++DA+ RG
Sbjct: 68 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 127
Query: 319 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPD 378
E E EASRR+KTELL+QM+G+ + V VL ATN+PW+LD+A+ RR E+RI +PLPD
Sbjct: 128 EG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPD 185
Query: 379 TEARRAMFESLL---PSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435
AR MFE + P +E Y L TEGYSGSDI +V K+A MQP+R++
Sbjct: 186 LAARTTMFEINVGDTPCVLTKED--YRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 243
Query: 436 EGRQEVAPDDELPQIGPIRPED---VEI----------------------ALKNTRPSAH 470
+ DDE ++ P P D +E+ A+K+TRP+ +
Sbjct: 244 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303
Query: 471 LHA-HRYEKFNADYGSE 486
+ E+F D+G E
Sbjct: 304 EDDLLKQEQFTRDFGQE 320
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 262 bits (669), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 131/250 (52%), Positives = 176/250 (70%), Gaps = 4/250 (1%)
Query: 184 DSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK 243
D E + L L I+ P+VKW + GLE AK LKEAV++PIK+P FTG +PW+
Sbjct: 109 DDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWR 168
Query: 244 GILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAP 302
GILLFGPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+SEKL+K LF+LAR + P
Sbjct: 169 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKP 228
Query: 303 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362
S IF+DEID++ R E +E EA+RR+KTE L+QM G+ ++ + VL ATN+PW LD+
Sbjct: 229 SIIFIDEIDSLCGSRSE--NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 286
Query: 363 AMLRRLEKRILVPLPDTEARRAMFESLLPS-QTGEESLPYDLLVERTEGYSGSDIRLVSK 421
A+ RR EKRI +PLP+ AR AMF L S Q + L +T+GYSG+DI ++ +
Sbjct: 287 AIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR 346
Query: 422 EAAMQPLRRL 431
+A MQP+R++
Sbjct: 347 DALMQPVRKV 356
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 261 bits (667), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 143/322 (44%), Positives = 200/322 (62%), Gaps = 36/322 (11%)
Query: 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML 258
I+ P+VKW + GLE AK LKEAV++PIK+P FTG +PW+GILLFGPPGTGK+ L
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61
Query: 259 AKAVATEC-KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 317
AKAVATE +TFF+IS+S +VSKW G+SEKL+K LF+LAR + PS IF+DEID++ R
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121
Query: 318 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 377
E +E EA+RR+KTE L+QM G+ ++ + VL ATN+PW LD+A+ RR EKRI +PLP
Sbjct: 122 SE--NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLP 179
Query: 378 DTEARRAMFE-SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436
+ AR AMF+ L +Q + L +T+GYSG+DI ++ ++A MQP+R++
Sbjct: 180 EPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATH 239
Query: 437 GRQEVAP---------DDELPQIGPIRPEDVEI----------------------ALKNT 465
++ P DD L P P +E+ +L NT
Sbjct: 240 FKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNT 299
Query: 466 RPSAHLH-AHRYEKFNADYGSE 486
+P+ + H + +KF D+G E
Sbjct: 300 KPTVNEHDLLKLKKFTEDFGQE 321
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 235 bits (599), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 198/322 (61%), Gaps = 24/322 (7%)
Query: 168 ANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVM 227
A+ ++ERL K L P + E + +I+ P V WE I G+E AK +KE VV
Sbjct: 52 AHPVDERL-KNLEPK--------MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVW 102
Query: 228 PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE 287
P+ P FTGL P KGILLFGPPGTGKT++ K +A++ TFF+ISASS+ SKW G+ E
Sbjct: 103 PMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGE 162
Query: 288 KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE- 346
K+++ LF +AR P+ IF+DEID+++SQRG+ EHE+SRR+KTE L+Q+DG T S E
Sbjct: 163 KMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSED 220
Query: 347 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT---GEESLPYDL 403
+ V+ ATN P E+D A RRL KR+ +PLP+ AR+ + +L+ + EE + +
Sbjct: 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEI--EQ 278
Query: 404 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463
+V++++ +SG+D+ + +EA++ P+R L + PD Q+ PI D E A +
Sbjct: 279 IVQQSDAFSGADMTQLCREASLGPIRSLQT--ADIATITPD----QVRPIAYIDFENAFR 332
Query: 464 NTRPSAH-LHAHRYEKFNADYG 484
RPS YE +N +G
Sbjct: 333 TVRPSVSPKDLELYENWNKTFG 354
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 233 bits (594), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/302 (45%), Positives = 191/302 (63%), Gaps = 20/302 (6%)
Query: 191 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 250
L + + +I+ G V+W I G + AK+ L+E V++P P+ FTGL +P KG+LLFGP
Sbjct: 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGP 62
Query: 251 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEI 310
PG GKT+LA+AVATEC TF NISA+S+ SK+ GD EKL++ LF +ARH PS IF+DE+
Sbjct: 63 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122
Query: 311 DAIISQRGEARSEHEASRRLKTELLIQMDGL--TQSDELVFVLAATNLPWELDAAMLRRL 368
D+++S+ + SEHEASRRLKTE L++ DGL + + VLAATN P ELD A LRR
Sbjct: 123 DSLLSE--RSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRF 180
Query: 369 EKRILVPLPDTEARRAMFESLLPSQTGEESLPYDL-----LVERTEGYSGSDIRLVSKEA 423
KR+ V LPD + R + LL Q P D L + T+GYSGSD+ ++K+A
Sbjct: 181 TKRVYVSLPDEQTRELLLNRLLQKQGS----PLDTEALRRLAKITDGYSGSDLTALAKDA 236
Query: 424 AMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNAD 482
A++P+R L V ++V D + + I +D +LK R S A + YEK++ D
Sbjct: 237 ALEPIRELNV-----EQVKCLD-ISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQD 290
Query: 483 YG 484
YG
Sbjct: 291 YG 292
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 221 bits (562), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 133/313 (42%), Positives = 194/313 (61%), Gaps = 14/313 (4%)
Query: 176 QKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF 235
+K L NF + ++ LA + +I+ VK++ I G + AK+ L+E V++P P+ F
Sbjct: 83 KKKDLKNFRNVDSN-LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELF 141
Query: 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFE 295
TGL +P +G+LLFGPPG GKTMLAKAVA E TFFNISA+S+ SK+ G+ EKL++ LF
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFA 201
Query: 296 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAAT 354
+AR PS IF+D++D+++ +R E EH+ASRRLKTE LI+ DG+ + D+ V V+ AT
Sbjct: 202 VARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGAT 259
Query: 355 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDL--LVERTEGYS 412
N P ELD A+LRR KR+ V LP+ E R + ++LL Q G +L L T+GYS
Sbjct: 260 NRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQ-GSPLTQKELAQLARMTDGYS 318
Query: 413 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 472
GSD+ ++K+AA+ P+R L + E + ++ IR D +LK + S
Sbjct: 319 GSDLTALAKDAALGPIREL------KPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQ 372
Query: 473 A-HRYEKFNADYG 484
Y ++N D+G
Sbjct: 373 TLEAYIRWNKDFG 385
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 143/234 (61%), Gaps = 5/234 (2%)
Query: 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 252
S R+ + P V WE I GLE+ KR L+E V P+++P F ++P KG+L +GPPG
Sbjct: 462 SALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521
Query: 253 TGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 312
GKT+LAKA+A EC+ F +I +++ W G+SE ++ +F+ AR AP +F DE+D+
Sbjct: 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581
Query: 313 IISQR-GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLE 369
I R G A+ R+ ++L +MDG++ + + VF++ ATN P +D A+LR RL+
Sbjct: 582 IAKARGGNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLD 640
Query: 370 KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 423
+ I +PLPD ++R A+ ++ L + + + L + T G+SG+D+ + + A
Sbjct: 641 QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 151/268 (56%), Gaps = 7/268 (2%)
Query: 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 263
+V ++ I G +KE V +P+++P F + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323
E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI +R ++
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEA 381
E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ + + +PD
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 382 RRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEV 441
R + + + + + + + T G+ G+D+ + EAA+Q +R+ M L++ E
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 442 APDDELPQIGPIRPEDVEIALKNTRPSA 469
D E+ + +D AL + PSA
Sbjct: 437 I-DAEVMNSLAVTMDDFRWALSQSNPSA 463
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 143/234 (61%), Gaps = 5/234 (2%)
Query: 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 252
S R+ + P V WE I GLE+ KR L+E V P+++P F ++P KG+L +GPPG
Sbjct: 462 SALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521
Query: 253 TGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 312
GKT+LAKA+A EC+ F +I +++ W G+SE ++ +F+ AR AP +F DE+D+
Sbjct: 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581
Query: 313 IISQR-GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLE 369
I R G A+ R+ ++L +MDG++ + + VF++ ATN P +D A+LR RL+
Sbjct: 582 IAKARGGNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLD 640
Query: 370 KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 423
+ I +PLPD ++R A+ ++ L + + + L + T G+SG+D+ + + A
Sbjct: 641 QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 151/268 (56%), Gaps = 7/268 (2%)
Query: 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 263
+V ++ + G +KE V +P+++P F + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323
E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI +R ++
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEA 381
E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ + + +PD
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 382 RRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEV 441
R + + + + + + + T G+ G+D+ + EAA+Q +R+ M L++ E
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 442 APDDELPQIGPIRPEDVEIALKNTRPSA 469
D E+ + +D AL + PSA
Sbjct: 437 I-DAEVMNSLAVTMDDFRWALSQSNPSA 463
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 142/232 (61%), Gaps = 5/232 (2%)
Query: 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGK 255
R+ + P V WE I GLE+ KR L+E V P+++P F ++P KG+L +GPPG GK
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 256 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 315
T+LAKA+A EC+ F +I +++ W G+SE ++ +F+ AR AP +F DE+D+I
Sbjct: 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122
Query: 316 QR-GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRI 372
R G A+ R+ ++L +MDG++ + + VF++ ATN P +D A+LR RL++ I
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLDQLI 181
Query: 373 LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAA 424
+PLPD ++R A+ ++ L + + + L + T G+SG+D+ + + A
Sbjct: 182 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 233
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 143/233 (61%), Gaps = 7/233 (3%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 262
P+V++E I GLE + ++E V +P+K+P+ F + + P KGILL+GPPGTGKT+LAKAV
Sbjct: 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71
Query: 263 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322
ATE TF + S +V K+ G+ L+K +F+LA+ APS IF+DEIDAI ++R +A +
Sbjct: 72 ATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALT 131
Query: 323 --EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 378
+ E R L +LL +MDG + V ++ ATN P LD A+LR R ++ I VP PD
Sbjct: 132 GGDREVQRTL-MQLLAEMDGFDARGD-VKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 189
Query: 379 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 431
+ R + + E + + + + TEG G++++ + EA M +R L
Sbjct: 190 EKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 143/247 (57%), Gaps = 15/247 (6%)
Query: 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 263
++ ++ I GL R L+E + +P+K P+ F + + P KG+LL+GPPGTGKT+LAKAVA
Sbjct: 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR-GEARS 322
F AS +V K+ G+S ++I+ +F A+ H P IF+DE+DAI +R E S
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 323 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 380
+R ELL QMDG + ++ ATN P LD A+LR RL++++ +PLP+
Sbjct: 297 ADREIQRTLMELLTQMDGFDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPLPNEA 355
Query: 381 ARRAMFE--SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438
R +F+ + +TGE ++ V+ ++G++G+DIR + EA +R + R
Sbjct: 356 GRLEIFKIHTAKVKKTGE--FDFEAAVKMSDGFNGADIRNCATEAGFFAIR------DDR 407
Query: 439 QEVAPDD 445
+ PDD
Sbjct: 408 DHINPDD 414
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 151/268 (56%), Gaps = 7/268 (2%)
Query: 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 263
+V ++ I G +KE V +P+++P F + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323
E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI +R ++
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEA 381
E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ + + +PD
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 382 RRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEV 441
R + + + + + + + T G+ G+D+ + EAA+Q +R+ M L++ E
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 442 APDDELPQIGPIRPEDVEIALKNTRPSA 469
D E+ + +D AL + PSA
Sbjct: 437 I-DAEVMNSLAVTMDDFRWALSQSNPSA 463
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 151/268 (56%), Gaps = 7/268 (2%)
Query: 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 263
+V ++ I G +KE V +P+++P F + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323
E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI +R ++
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEA 381
E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ + + +PD
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 382 RRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEV 441
R + + + + + + + T G+ G+D+ + EAA+Q +R+ M L++ E
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 442 APDDELPQIGPIRPEDVEIALKNTRPSA 469
D E+ + +D AL + PSA
Sbjct: 437 I-DAEVMNSLAVTMDDFRWALSQSNPSA 463
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 151/268 (56%), Gaps = 7/268 (2%)
Query: 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 263
+V ++ I G +KE V +P+++P F + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323
E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI +R ++
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEA 381
E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ + + +PD
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 382 RRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEV 441
R + + + + + + + T G+ G+D+ + EAA+Q +R+ M L++ E
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 442 APDDELPQIGPIRPEDVEIALKNTRPSA 469
D E+ + +D AL + PSA
Sbjct: 437 I-DAEVMNSLAVTMDDFRWALSQSNPSA 463
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 140/233 (60%), Gaps = 8/233 (3%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 262
PDV + + GL+ K+ ++EAV +P+ + + + P +G+LL+GPPGTGKTML KAV
Sbjct: 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226
Query: 263 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR- 321
A K F ++ S V K+ G+ ++++ +F LAR +APS IF+DE+D+I ++R +A+
Sbjct: 227 ANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 286
Query: 322 -SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVP-LP 377
S+ E R L ELL QMDG QS V V+ ATN LD A+LR RL+++I P L
Sbjct: 287 GSDREVQRIL-IELLTQMDGFDQSTN-VKVIMATNRADTLDPALLRPGRLDRKIEFPSLR 344
Query: 378 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 430
D RR +F ++ + D L+ R + SG+ I + +EA ++ +R+
Sbjct: 345 DRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 139/239 (58%), Gaps = 6/239 (2%)
Query: 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 263
+V ++ + G +KE V +P+++P F + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323
E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI +R ++
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEA 381
E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ + + +PD
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 382 RRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 440
R + + + + + + + T G+ G+D+ + EAA+Q +R+ M L++ E
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 145/241 (60%), Gaps = 19/241 (7%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLAKA 261
P+V W I LE+ + L A++ P++ P F GL++P G+LL GPPG GKT+LAKA
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTP-AGVLLAGPPGCGKTLLAKA 63
Query: 262 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321
VA E F ++ +++ + G+SE+ ++ +F+ A++ AP IF DE+DA+ +R +
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD-- 121
Query: 322 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 379
E AS R+ +LL +MDGL ++ + VF++AATN P +D A+LR RL+K + V LP
Sbjct: 122 RETGASVRVVNQLLTEMDGL-EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPP 180
Query: 380 EARRAMFESL--------LPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 431
R A+ +++ L + E++ DL R + Y+G+D+ + +EA++ LR+
Sbjct: 181 ADRLAILKTITKNGTKPPLDADVNLEAIAGDL---RCDCYTGADLSALVREASICALRQE 237
Query: 432 M 432
M
Sbjct: 238 M 238
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 147/266 (55%), Gaps = 17/266 (6%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 262
PD ++ + GL + +KE + +P+K+P+ F L ++ KG++L+GPPGTGKT+LA+AV
Sbjct: 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAV 202
Query: 263 A--TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR--G 318
A T+CK F +S + +V K+ G+ ++++ LF +AR HAPS IF+DEID+I S R G
Sbjct: 203 AHHTDCK--FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEG 260
Query: 319 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 376
+ E R + ELL Q+DG S + ++A L LD A+LR R++++I P
Sbjct: 261 SGGGDSEVQRTM-LELLNQLDGFETSKNIKIIMATNRLDI-LDPALLRPGRIDRKIEFPP 318
Query: 377 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436
P AR + + + E+ G SG+D++ V EA M LR E
Sbjct: 319 PSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALR------E 372
Query: 437 GRQEVAPDDELPQIGPIRPEDVEIAL 462
R V +D +G + ++ E A+
Sbjct: 373 RRIHVTQEDFELAVGKVMNKNQETAI 398
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 138/249 (55%), Gaps = 14/249 (5%)
Query: 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLA 259
G+ V ++ + G E A LKE VV +K P F G P KGILL GPPGTGKT+LA
Sbjct: 9 GNKRVTFKDVGGAEEAIEELKE-VVEFLKDPSKFNRIGARMP-KGILLVGPPGTGKTLLA 66
Query: 260 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319
+AVA E FF+IS S V + G ++ LF A+ HAP +F+DEIDA+ RG
Sbjct: 67 RAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126
Query: 320 A-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 376
H+ + +LL++MDG S E + V+AATN P LD A+LR R +K+I+V
Sbjct: 127 GLGGGHDEREQTLNQLLVEMDGF-DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDP 185
Query: 377 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436
PD R+ + E ++ E + +++ +RT G+ G+D+ + EAA+ R E
Sbjct: 186 PDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAR------E 239
Query: 437 GRQEVAPDD 445
GR ++ D
Sbjct: 240 GRDKITMKD 248
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 138/231 (59%), Gaps = 7/231 (3%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLAKA 261
P + + GL+ L EA+V+P+K F G+ +P KG L++GPPGTGKT+LA+A
Sbjct: 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTLLARA 234
Query: 262 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA- 320
A + TF ++A +V + G+ KL++ F LA+ AP+ IF+DE+DAI ++R ++
Sbjct: 235 CAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE 294
Query: 321 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 378
+S +R ELL Q+DG + SD+ V VLAATN LD A+LR RL+++I PLP
Sbjct: 295 KSGDREVQRTMLELLNQLDGFS-SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS 353
Query: 379 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 429
++R + + T ++ + + L T+ ++G+ ++ V+ EA M LR
Sbjct: 354 EDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 141/247 (57%), Gaps = 11/247 (4%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 261
SP + I GLE+ + +KE+V +P+ +P+ + + + P KG++L+G PGTGKT+LAKA
Sbjct: 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKA 235
Query: 262 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321
VA + TF I S ++ K+ GD +L + +F++A +APS +F+DEIDAI ++R ++
Sbjct: 236 VANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN 295
Query: 322 SEHEAS-RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 378
S E +R ELL Q+DG + V V+ ATN LD A++R R++++IL PD
Sbjct: 296 SGGEREIQRTMLELLNQLDGFDDRGD-VKVIMATNKIETLDPALIRPGRIDRKILFENPD 354
Query: 379 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438
++ + E + + LV + SG+DI+ + EA + LR E R
Sbjct: 355 LSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALR------ERR 408
Query: 439 QEVAPDD 445
+V +D
Sbjct: 409 MQVTAED 415
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 141 bits (356), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 139/260 (53%), Gaps = 15/260 (5%)
Query: 175 LQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKY 234
++ PL P D + T E PDV + + G ++ L+E V +P+ P+
Sbjct: 183 IELPLPPRIDPSVTMMTVEE--------KPDVTYSDVGGCKDQIEKLREVVELPLLSPER 234
Query: 235 FTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVL 293
F L + P KGILL+GPPGTGKT+ A+AVA TF + S +V K+ G+ ++++ L
Sbjct: 235 FATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVREL 294
Query: 294 FELARHHAPSTIFLDEIDAIISQRGE--ARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351
FE+AR IF DEIDA+ R + A ++E R + EL+ Q+DG + V+
Sbjct: 295 FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTM-LELITQLDGFDPRGN-IKVM 352
Query: 352 AATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTE 409
ATN P LD A+LR R+++++ LPD E R +F S + E + ++L+
Sbjct: 353 FATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCP 412
Query: 410 GYSGSDIRLVSKEAAMQPLR 429
+G+++R V EA M +R
Sbjct: 413 NSTGAELRSVCTEAGMFAIR 432
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 137/249 (55%), Gaps = 14/249 (5%)
Query: 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLA 259
G+ V ++ + G E A LKE VV +K P F G P KGILL GPPGTG T+LA
Sbjct: 9 GNKRVTFKDVGGAEEAIEELKE-VVEFLKDPSKFNRIGARMP-KGILLVGPPGTGATLLA 66
Query: 260 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319
+AVA E FF+IS S V + G ++ LF A+ HAP +F+DEIDA+ RG
Sbjct: 67 RAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126
Query: 320 A-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 376
H+ + +LL++MDG S E + V+AATN P LD A+LR R +K+I+V
Sbjct: 127 GLGGGHDEREQTLNQLLVEMDGF-DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDP 185
Query: 377 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436
PD R+ + E ++ E + +++ +RT G+ G+D+ + EAA+ R E
Sbjct: 186 PDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAR------E 239
Query: 437 GRQEVAPDD 445
GR ++ D
Sbjct: 240 GRDKITMKD 248
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 128/227 (56%), Gaps = 6/227 (2%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAV 262
P+V+++ + G E AK + E +V +KYP+ + L + KG+LL GPPGTGKT+LAKAV
Sbjct: 6 PNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 64
Query: 263 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR--GEA 320
A E FF++ SS + + G ++ LFE A+ APS IF+DEIDAI R G
Sbjct: 65 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 124
Query: 321 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 378
S ++ + +LL +MDG + V VLAATN P LD A++R R ++++LV PD
Sbjct: 125 VSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184
Query: 379 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAM 425
R + + + + + + T G +G+D+ + EAA+
Sbjct: 185 FNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAAL 231
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 132 bits (331), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 6/222 (2%)
Query: 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAVATEC 266
+ + G + AK + E +V ++ P F L KG+L+ GPPGTGKT+LAKA+A E
Sbjct: 11 FADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 267 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHE 325
K FF IS S V + G ++ +FE A+ AP IF+DEIDA+ QRG H+
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 326 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARR 383
+ ++L++MDG + +E + V+AATN P LD A+LR R +++++V LPD R
Sbjct: 130 EREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 188
Query: 384 AMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAM 425
+ + + + ++ T G+SG+D+ + EAA+
Sbjct: 189 QILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAAL 230
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 129/231 (55%), Gaps = 9/231 (3%)
Query: 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAVAT 264
V ++ + G+ AK ++E V +K P+ F L + KG LL GPPG GKT+LAKAVAT
Sbjct: 3 VSFKDVAGMHEAKLEVRE-FVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 265 ECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEH 324
E + F ++ + V G ++ LF+ AR AP +++DEIDA+ +R S
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 325 EASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 380
+ +T +LL++MDG+ +D V VLA+TN LD A++R RL++ + + LP +
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDH-VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180
Query: 381 ARRAMFESLLPSQTGEESLPY--DLLVERTEGYSGSDIRLVSKEAAMQPLR 429
RR +FE L S +S + L E T G+SG+DI + EAA+ R
Sbjct: 181 ERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAR 231
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 8/218 (3%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF--TGLLSPWKGILLFGPPGTGKTMLAK 260
+P V ++ + G E AK + +V +K P F G P KG+LL GPPG GKT LA+
Sbjct: 34 APKVTFKDVAGAEEAK-EELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 91
Query: 261 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 320
AVA E + F S S V + G ++ LFE A+ HAP +F+DEIDA+ +RG
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151
Query: 321 RSEHEASR-RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 377
R + +LL++MDG + D + V+AATN P LD A+LR R +++I + P
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210
Query: 378 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 415
D + R + + E + LL +RT G+ G+D
Sbjct: 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 8/218 (3%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF--TGLLSPWKGILLFGPPGTGKTMLAK 260
+P V ++ + G E AK + +V +K P F G P KG+LL GPPG GKT LA+
Sbjct: 10 APKVTFKDVAGAEEAK-EELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 67
Query: 261 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 320
AVA E + F S S V + G ++ LFE A+ HAP +F+DEIDA+ +RG
Sbjct: 68 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 127
Query: 321 RSEHEASR-RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 377
R + +LL++MDG + D + V+AATN P LD A+LR R +++I + P
Sbjct: 128 VGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 186
Query: 378 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 415
D + R + + E + LL +RT G+ G+D
Sbjct: 187 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 224
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 8/218 (3%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF--TGLLSPWKGILLFGPPGTGKTMLAK 260
+P V ++ + G E AK + +V +K P F G P KG+LL GPPG GKT LA+
Sbjct: 34 APKVTFKDVAGAEEAK-EELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 91
Query: 261 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 320
AVA E + F S S V + G ++ LFE A+ HAP +F+DEIDA+ +RG
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151
Query: 321 RSEHEASR-RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 377
R + +LL++MDG + D + V+AATN P LD A+LR R +++I + P
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210
Query: 378 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 415
D + R + + E + LL +RT G+ G+D
Sbjct: 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 117/218 (53%), Gaps = 8/218 (3%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF--TGLLSPWKGILLFGPPGTGKTMLAK 260
+P V ++ + G E AK + +V +K P F G P KG+LL GPPG GKT LA+
Sbjct: 25 APKVTFKDVAGAEEAK-EELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 82
Query: 261 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 320
AVA E + F S S V + G ++ LFE A+ HAP +F+DEIDA+ +RG
Sbjct: 83 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 142
Query: 321 RSEHEASR-RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 377
R + +LL++MDG + D + V+AATN P LD A+LR R +++I + P
Sbjct: 143 VGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 201
Query: 378 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 415
D + R + + E + LL +RT G+ G+D
Sbjct: 202 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 377 PDTEARRAMFE---SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 433
PD AR MFE P +E Y L TEGYSGSDI +V K+A MQP+R++
Sbjct: 3 PDLAARTTMFEINVGDTPCVLTKED--YRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 60
Query: 434 LLEGRQEVAPDDELPQIGPIRPED 457
+ DDE ++ P P D
Sbjct: 61 ATHFKDVSTEDDETRKLTPCSPGD 84
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 246 LLFGPPGTGKTMLAKAVA------------TECKTTFFNISASSVVSKWRGDSEKLIKVL 293
LL G G GKT +A+ +A +C +I + +K+RGD EK K L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 294 FELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL---LIQMDGLTQSDELVFV 350
+ S +F+DEI II + + +A+ +K L I++ G T E
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF--- 327
Query: 351 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPY 401
+N+ +E D A+ RR +K I + P E + L P + Y
Sbjct: 328 ---SNI-FEKDRALARRFQK-IDITEPSIEETVQIINGLKPKYEAHHDVRY 373
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 44/179 (24%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAP-- 302
++L+GPPGTGKT LA+ +A ISA + K I+ E AR +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAG 105
Query: 303 --STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE 359
+ +F+DE+ H ++ + L ++ T + F+ A T P +E
Sbjct: 106 RRTILFVDEV-------------HRFNKSQQDAFLPHIEDGT----ITFIGATTENPSFE 148
Query: 360 LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL 418
L++A+L R AR + +SL S E + + ++T GY G DI L
Sbjct: 149 LNSALLSR-------------ARVYLLKSL--STEDIEQVLTQAMEDKTRGYGGQDIVL 192
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Query: 246 LLFGPPGTGKTMLAKAVATEC------------KTTFFNISASSVVSKWRGD-SEKLIKV 292
+L G PG GKT + + +A + ++ A +K+RG+ E+L V
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 293 LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL---IQMDGLTQSDELVF 349
L +LA+ +F+DE+ ++ G+A +A LK L + G T DE
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGA-GKADGAMDAGNMLKPALARGELHCVGATTLDEYRQ 165
Query: 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTE 380
+ E DAA+ RR +K + V P E
Sbjct: 166 YI-------EKDAALERRFQK-VFVAEPSVE 188
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Query: 217 AKRLLKEAVVMP----IKYPKYFTGLLSPWKGILLFGPPGTGKTML 258
A +++ +V+P IK+ K F LL+ +GI+L GPPG+GKTM+
Sbjct: 1019 AHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1064
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Query: 217 AKRLLKEAVVMP----IKYPKYFTGLLSPWKGILLFGPPGTGKTML 258
A +++ +V+P IK+ K F LL+ +GI+L GPPG+GKTM+
Sbjct: 1238 AHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1283
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 22/225 (9%)
Query: 221 LKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV-- 278
+KE ++ + K L P + L GPPG GKT LAK++A F IS V
Sbjct: 89 VKERILEYLAVQKLTKSLKGPI--LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRD 146
Query: 279 VSKWRGDSEKLI-----KVLFELARHHAPSTIF-LDEIDAIISQ-RGEARS------EHE 325
S+ RG + +++ + + + +F LDEID + S RG+ S + E
Sbjct: 147 ESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPE 206
Query: 326 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAM 385
+ + + L++ ++F+ A NL + + R+E + + E +
Sbjct: 207 QNSSFSDHYIEETFDLSK---VLFIATANNLAT-IPGPLRDRMEIINIAGYTEIEKLEIV 262
Query: 386 FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 430
+ LLP Q E L L R + IR ++EA ++ L R
Sbjct: 263 KDHLLPKQIKEHGLKKSNLQLRDQAIL-DIIRYYTREAGVRSLER 306
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 26/149 (17%)
Query: 246 LLFGPPGTGKTMLAKAVATEC------------KTTFFNISASSVVSKWRGD-SEKLIKV 292
+L G PG GKT + + +A + K ++S+ +K+RGD E+L +
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSI 106
Query: 293 LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 352
L E+ +F+DEI ++ A +A LK L EL + A
Sbjct: 107 LKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPML--------ARGELRCIGA 158
Query: 353 ATNLPW----ELDAAMLRRLEKRILVPLP 377
T + E D A+ RR ++ ILV P
Sbjct: 159 TTVSEYRQFIEKDKALERRFQQ-ILVEQP 186
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-----KGILLFGPPGTGKTMLAKAVATE 265
+ G E AK++L AV + Y + G S ILL GP G+GKT+LA+ +A
Sbjct: 17 VIGQEQAKKVL--AVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74
Query: 266 CKTTFFNISASSVV-SKWRG-DSEKLIKVLFELARHHAPST----IFLDEIDAI 313
F A+++ + + G D E +I+ L + + +++D+ID I
Sbjct: 75 LDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPW-----KGILLFGPPGTGKTMLAKAVATECK 267
G E AK++L AV + Y + G S ILL GP G+GKT+LA+ +A
Sbjct: 19 GQEQAKKVL--AVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76
Query: 268 TTFFNISASSVV-SKWRG-DSEKLIKVLFELARHHAPST----IFLDEIDAI 313
F A+++ + + G D E +I+ L + + +++D+ID I
Sbjct: 77 VPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LL GPPG GKT LA +A+E +T ++++ V+ K +GD + +L L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLERG---DV 105
Query: 305 IFLDEI 310
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LL GPPG GKT LA +A+E +T ++++ V+ K +GD + +L L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLERG---DV 105
Query: 305 IFLDEI 310
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LL GPPG GKT LA +A+E +T ++++ V+ K +GD + +L L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLERG---DV 105
Query: 305 IFLDEI 310
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LL GPPG GKT LA +A+E +T ++++ V+ K +GD + +L L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLERG---DV 105
Query: 305 IFLDEI 310
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LL GPPG GKT LA +A+E +T ++++ V+ K +GD + +L L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLERG---DV 105
Query: 305 IFLDEI 310
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH 300
P + +LLFGPPG GKT LA +A E +++ + K GD ++ E
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKP-GDLAAILANSLEEG--- 91
Query: 301 APSTIFLDEIDAIISQ 316
+F+DEI + Q
Sbjct: 92 --DILFIDEIHRLSRQ 105
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH 300
P + +LLFGPPG GKT LA +A E +++ + K GD ++ E
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKP-GDLAAILANSLEEG--- 91
Query: 301 APSTIFLDEIDAIISQ 316
+F+DEI + Q
Sbjct: 92 --DILFIDEIHRLSRQ 105
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH 300
P + +LLFGPPG GKT LA +A E +++ + K GD ++ E
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKP-GDLAAILANSLE----- 89
Query: 301 APSTIFLDEIDAIISQ 316
+F+DEI + Q
Sbjct: 90 EGDILFIDEIHRLSRQ 105
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE--CKTTF 270
G ENA+ V++ + K G + +LL GPPGTGKT LA A+A E K F
Sbjct: 41 GQENAREAC--GVIVELIKSKKMAG-----RAVLLAGPPGTGKTALALAIAQELGSKVPF 93
Query: 271 FNISASSVVSKWRGDSEKLIK 291
+ S V S +E L++
Sbjct: 94 CPMVGSEVYSTEIKKTEVLME 114
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LL GPPG G+T LA +A+E +T ++++ V+ K +GD + +L L R
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLERG---DV 105
Query: 305 IFLDEI 310
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV--VSKWRGDSEKLIKVLFELARHH 300
K IL+ GP G GKT +A+ +A F + A+ V + + +I+ L + A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGA 110
Query: 301 APST-----IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD--------GLTQSDEL 347
+ +F+DEID I ++GE + ++ +LL ++ G+ ++D +
Sbjct: 111 IDAVEQNGIVFIDEIDK-ICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 169
Query: 348 VFV 350
+F+
Sbjct: 170 LFI 172
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 37/248 (14%)
Query: 237 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFEL 296
L S + I ++G GTGKT L +A E K + + SS + E L K
Sbjct: 32 NLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAXVEHLKKGTINE 91
Query: 297 ARHHAPST--IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354
R+ S + LD++ + G+ R++ E T L++ +LA+
Sbjct: 92 FRNXYKSVDLLLLDDVQFL---SGKERTQIEFFHIFNTLYLLEKQ---------IILASD 139
Query: 355 NLPWELDAA---MLRRLEKRILVPLP-DTEARRAMFESLLPSQTGE-ESLPYDLLVERTE 409
P +LD ++ R E ILV + D + R + + L E D L+E T+
Sbjct: 140 RHPQKLDGVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTK 199
Query: 410 GYSGSDIRLVSKEAAMQPLRRLMVLLEG--RQEVAPDDELPQI-------GPIRPEDVEI 460
++R + + + L+ EG R+E D+L QI ++ ED+
Sbjct: 200 -----NVREIEGKIKLIKLKG----FEGLERKERKERDKLXQIVEFVANYYAVKVEDILS 250
Query: 461 ALKNTRPS 468
+N R S
Sbjct: 251 DKRNKRTS 258
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV-SKWRG-DSEKLIKVLFELA---- 297
ILL GP G+GKT++A+ +A A+S+ + + G D E ++ L + +
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 298 RHHAPSTIFLDEIDAIISQRGEARS 322
+ +F+DEID IS+ E RS
Sbjct: 134 QKAQKGIVFIDEIDK-ISRLSENRS 157
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE----KLIKVLFE 295
+P +LL GPP +GKT LA +A E F I + K G SE + +K +F+
Sbjct: 61 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFD 117
Query: 296 LARHHAPSTIFLDEIDAII 314
A S + +D+I+ ++
Sbjct: 118 DAYKSQLSCVVVDDIERLL 136
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE----KLIKVLFE 295
+P +LL GPP +GKT LA +A E F I + K G SE + +K +F+
Sbjct: 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFD 118
Query: 296 LARHHAPSTIFLDEIDAII 314
A S + +D+I+ ++
Sbjct: 119 DAYKSQLSCVVVDDIERLL 137
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 265
G ENA+ V++ + K G + +LL GPPGTGKT LA A+A E
Sbjct: 55 GQENAREAC--GVIVELIKSKKXAG-----RAVLLAGPPGTGKTALALAIAQE 100
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 37/248 (14%)
Query: 237 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFEL 296
L S + I ++G GTGKT L +A E K + + SS + E L K
Sbjct: 31 NLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINE 90
Query: 297 ARHHAPST--IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354
R+ S + LD++ + G+ R++ E T L++ +LA+
Sbjct: 91 FRNMYKSVDLLLLDDVQFL---SGKERTQIEFFHIFNTLYLLEKQ---------IILASD 138
Query: 355 NLPWELDAA---MLRRLEKRILVPLP-DTEARRAMFESLLPSQTGE-ESLPYDLLVERTE 409
P +LD ++ R E ILV + D + R + + L E D L+E T+
Sbjct: 139 RHPQKLDGVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTK 198
Query: 410 GYSGSDIRLVSKEAAMQPLRRLMVLLEG--RQEVAPDDELPQI-------GPIRPEDVEI 460
++R + + + L+ EG R+E D+L QI ++ ED+
Sbjct: 199 -----NVREIEGKIKLIKLKG----FEGLERKERKERDKLMQIVEFVANYYAVKVEDILS 249
Query: 461 ALKNTRPS 468
+N R S
Sbjct: 250 DKRNKRTS 257
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 37/248 (14%)
Query: 237 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFEL 296
L S + I ++G GTGKT L +A E K + + SS + E L K
Sbjct: 32 NLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINE 91
Query: 297 ARHHAPST--IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354
R+ S + LD++ + G+ R++ E T L++ +LA+
Sbjct: 92 FRNMYKSVDLLLLDDVQFL---SGKERTQIEFFHIFNTLYLLEKQ---------IILASD 139
Query: 355 NLPWELDAA---MLRRLEKRILVPLP-DTEARRAMFESLLPSQTGE-ESLPYDLLVERTE 409
P +LD ++ R E ILV + D + R + + L E D L+E T+
Sbjct: 140 RHPQKLDGVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTK 199
Query: 410 GYSGSDIRLVSKEAAMQPLRRLMVLLEG--RQEVAPDDELPQI-------GPIRPEDVEI 460
++R + + + L+ EG R+E D+L QI ++ ED+
Sbjct: 200 -----NVREIEGKIKLIKLKG----FEGLERKERKERDKLMQIVEFVANYYAVKVEDILS 250
Query: 461 ALKNTRPS 468
+N R S
Sbjct: 251 DKRNKRTS 258
>pdb|1ZXJ|A Chain A, Crystal Structure Of The Hypthetical Mycoplasma Protein,
Mpn555
pdb|1ZXJ|B Chain B, Crystal Structure Of The Hypthetical Mycoplasma Protein,
Mpn555
pdb|1ZXJ|C Chain C, Crystal Structure Of The Hypthetical Mycoplasma Protein,
Mpn555
pdb|1ZXJ|D Chain D, Crystal Structure Of The Hypthetical Mycoplasma Protein,
Mpn555
Length = 218
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 13/62 (20%)
Query: 182 NFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSP 241
N D AE + + E L RD+I+G+ D ++I A++++K+A+V F L
Sbjct: 105 NIDEAELKNVMEGLKRDVIQGAEDNTVQAI-----AEKIIKKALV--------FNHLQKE 151
Query: 242 WK 243
WK
Sbjct: 152 WK 153
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281
++ +L+GPPG GKT A VA E +AS V SK
Sbjct: 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 246 LLFGPPGTGKTMLAKAVATEC------------KTTFFNISASSVVSKWRGD-SEKLIKV 292
+L G PG GKT + + +A + + + +K+RG+ E+L V
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 293 LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL---IQMDGLTQSDE 346
+ E+ + +F+DE+ ++ G+A +A LK L +++ G T DE
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGA-GKAEGAVDAGNMLKPALARGELRLIGATTLDE 310
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 23/90 (25%)
Query: 245 ILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARH 299
+L GPPG GKT A A+A E + F ++AS E+ I V+ E +
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS---------DERGINVIREKVKE 99
Query: 300 HAPS---------TIFLDEIDAIISQRGEA 320
A + IFLDE DA+ +A
Sbjct: 100 FARTKPIGGASFKIIFLDEADALTQDAQQA 129
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 94/231 (40%), Gaps = 40/231 (17%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPS- 303
+L +GPPGTGKT A+A E + + S++V + ++ I V+ + A +
Sbjct: 49 LLFYGPPGTGKTSTIVALARE----IYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTR 104
Query: 304 --------TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355
I LDE DA+ + + A RR+ ++ T++ VLA N
Sbjct: 105 QIFSKGFKLIILDEADAMTN------AAQNALRRV-------IERYTKNTRFC-VLA--N 148
Query: 356 LPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 415
+L A+L + + PLP R + L+ + L+E + G D
Sbjct: 149 YAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG----D 204
Query: 416 IRLVSKEAAMQPLRRLMVLLEG--RQEVAPDDELPQIGPIRPEDVEIALKN 464
+R V + L+ L+ E++ D G RP D++ LK+
Sbjct: 205 MRRV-----LNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKS 250
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 246 LLFGPPGTGKTMLAKAVATEC------------KTTFFNISASSVVSKWRGD-SEKLIKV 292
+L G PG GKT + + +A + + + +K+RG+ E+L V
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 293 LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL---IQMDGLTQSDE 346
+ E+ + +F+DE+ ++ G+A +A LK L +++ G T DE
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGA-GKAEGAVDAGNMLKPALARGELRLIGATTLDE 173
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276
K IL+ GP G GKT +A+ +A F + A+
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276
K IL+ GP G GKT +A+ +A F + A+
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 83
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276
K IL+ GP G GKT +A+ +A F + A+
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 90
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 243 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWRGDSEKLIKVLFE----L 296
+ +L+ G PGTGKT +A +A T F I+ S + S +E L +
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR 130
Query: 297 ARHHAPSTIFLDEIDAIISQ 316
+ A T+ L EID I S+
Sbjct: 131 IKAGAVHTVSLHEIDVINSR 150
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276
K IL+ GP G GKT +A+ +A F + A+
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84
>pdb|3KHY|A Chain A, Crystal Structure Of A Propionate Kinase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3KHY|B Chain B, Crystal Structure Of A Propionate Kinase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 384
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 256 TMLAKAVATE-CKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAII 314
T LA+ +AT+ CK F A + K+ + K +FE + L++I AI
Sbjct: 29 TGLAENIATKNCKVVF---KAEHKIVKYLENGS--YKDVFEXLKDFLVENKHLEKIVAI- 82
Query: 315 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILV 374
R H + +LI D L + + LA + P ++ R ++I
Sbjct: 83 ----GHRVVH-GGQYFSKSVLINADSLEKIKACI-ALAPLHNPAHIEGI---RFCQQIFP 133
Query: 375 PLPDTEARRAMFESLLPSQTGEESLPYDLLVE---RTEGYSGSDIRLVSKEAA 424
LP F PS E ++PY+L + R G G+ + VS++AA
Sbjct: 134 ELPQVAVFDTAFHQTXPSYIAEYAIPYELTHKHNIRKYGAHGTSHKYVSEQAA 186
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274
ILL G PG GKT L K +A++ + N+
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINVG 36
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNIS 274
ILL G PG GKT L K +A++ + N+
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINVG 43
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 246 LLFGPPGTGKTMLAKAVATECKTTFF-------NISASSVVSKWRGDSEKLIKVLFELAR 298
+L G PG GKT +A+ +A + + + +K+RG+ E +K + + R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 299 HHAPSTIFLD-EIDA 312
+F+D IDA
Sbjct: 265 QAGNIILFIDAAIDA 279
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 23/85 (27%)
Query: 245 ILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKV----LFE 295
+L GPPGTGKT A A+A + + F ++AS E+ I V + E
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS---------DERGIDVVRHKIKE 91
Query: 296 LARHH----AP-STIFLDEIDAIIS 315
AR AP IFLDE DA+ +
Sbjct: 92 FARTAPIGGAPFKIIFLDEADALTA 116
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 245 ILLFGPPGTGKTMLAKAVA 263
+LL G PGTGK+ML +A+A
Sbjct: 63 VLLIGEPGTGKSMLGQAMA 81
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 246 LLFGPPGTGKTMLAKAVATECKTTFF-------NISASSVVSKWRGDSEKLIKVLFELAR 298
+L G PG GKT +A+ +A + + + +K+RG+ E +K + + R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 299 HHAPSTIFLD-EIDA 312
+F+D IDA
Sbjct: 265 QAGNIILFIDAAIDA 279
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 23/85 (27%)
Query: 245 ILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKV----LFE 295
+L GPPGTGKT A A+A + + F ++AS E+ I V + E
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS---------DERGIDVVRHKIKE 91
Query: 296 LARHH----AP-STIFLDEIDAIIS 315
AR AP IFLDE DA+ +
Sbjct: 92 FARTAPIGGAPFKIIFLDEADALTA 116
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276
K IL GP G GKT +A+ +A F + A+
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLANAPFIKVEAT 84
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 244 GILLFGPPGTGKTMLAKAVATE 265
IL+ G PGTGKT +A+ +A E
Sbjct: 12 NILITGTPGTGKTSMAEMIAAE 33
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 243 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWRGDSEKL-------IKVL 293
+ +L+ G PGTGKT +A A T F I+ S + S +E L I V
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRRSIGVR 145
Query: 294 FELARHHAPSTIFLDEIDAIISQ 316
+ T+ L EID I S+
Sbjct: 146 IKEGPPGVVHTVSLHEIDVINSR 168
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 234 YFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270
YF G +S + I++ GP GTGK+ L K + E +F
Sbjct: 11 YFQGSMS--RPIVISGPSGTGKSTLLKKLFAEYPDSF 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,660,972
Number of Sequences: 62578
Number of extensions: 529522
Number of successful extensions: 1593
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1419
Number of HSP's gapped (non-prelim): 98
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)